Psyllid ID: psy11826

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTDY
Secondary Structure (PSIPRED)
cccccEEEEEEEEEccccEEEEEEccEEEcccccEEEEEEEcccccEEEEEEEccccccccEEEEEEEEccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEccccccEEEEEEcccEcccccEEEEEEEEEcccccEEEEEEcccccccccEEEEEEEcccccccccEEccc
Coil and Loop (DISEMBL)
MLGRKITFFcmaegfprphitwtkddieltFHKYFQVHEWflgnntikskmeidpatqkdagyyecvadnpfaidrrgfrtdy
Flexible Loop (DISEMBL)
MLGRKITFFcmaegfprphiTWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVadnpfaidrrgfrtdy
Low Complexity Region (SEG)
MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTDY
Disordered region (IsUnstruct)
****KITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID********
Disordered Region (DISOPRED)
MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTDY
Disordered Region (DISEMBL)
MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTDY
Disordered Region (DISPRO)
**GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTDY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	83	2.2.26 [Sep-21-2011]
Q64487	1912	Receptor-type tyrosine-pr	no	N/A	0.807	0.035	0.352	2e-05
Q9I7U4	18141	Titin OS=Drosophila melan	no	N/A	0.759	0.003	0.367	2e-05
P23468	1912	Receptor-type tyrosine-pr	no	N/A	0.807	0.035	0.352	2e-05
A1KZ92	1463	Peroxidasin-like protein	no	N/A	0.783	0.044	0.342	2e-05
Q9NR99	2828	Matrix-remodeling-associa	no	N/A	0.867	0.025	0.337	4e-05
Q92626	1479	Peroxidasin homolog OS=Ho	no	N/A	0.722	0.040	0.385	4e-05
Q96RW7	5635	Hemicentin-1 OS=Homo sapi	no	N/A	0.795	0.011	0.315	5e-05
Q9BWV1	1114	Brother of CDO OS=Homo sa	no	N/A	0.710	0.052	0.338	6e-05
Q24372	359	Lachesin OS=Drosophila me	no	N/A	0.650	0.150	0.296	6e-05
P31836	853	Neural cell adhesion mole	no	N/A	0.771	0.075	0.304	7e-05

>sp|Q64487|PTPRD_MOUSE Receptor-type tyrosine-protein phosphatase delta OS=Mus musculus GN=Ptprd PE=1 SV=3

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 4   RKITFFCMAEGFPRPHITWTKD----DIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
           R  T  C A G P P ITW KD    D      +  Q+    +G   I+  ++I+ + + 
Sbjct: 141 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGGTPIRGALQIEQSEES 200

Query: 60  DAGYYECVADN 70
           D G YECVA N
Sbjct: 201 DQGKYECVATN 211

Mus musculus (taxid: 10090)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 4EC: 8

>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 5/68 (7%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G  IT    A G P+P ITW KD ++++        E F+G +   + +EI   T  DAG
Sbjct: 485 GEPITMSANAIGTPQPRITWQKDGVQIS-----STAERFVGIDGGATCLEIPRVTANDAG 539

Query: 63  YYECVADN 70
           +Y+C A N
Sbjct: 540 WYQCTAQN 547

Key component in the assembly and functioning of adult and embryonic striated muscles and muscle tendons. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Drosophila melanogaster (taxid: 7227)

>sp|P23468|PTPRD_HUMAN Receptor-type tyrosine-protein phosphatase delta OS=Homo sapiens GN=PTPRD PE=1 SV=2

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 4   RKITFFCMAEGFPRPHITWTKD----DIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
           R  T  C A G P P ITW KD    D      +  Q+    +G   I+  ++I+ + + 
Sbjct: 141 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGGTPIRGALQIEQSEES 200

Query: 60  DAGYYECVADN 70
           D G YECVA N
Sbjct: 201 DQGKYECVATN 211

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|A1KZ92|PXDNL_HUMAN Peroxidasin-like protein OS=Homo sapiens GN=PXDNL PE=1 SV=3

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 8/73 (10%)

Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           +G+ I   C A+G P+P ITW K+ +++T    F V +        +  + I  A   D 
Sbjct: 524 VGKNINISCHAQGEPQPIITWNKEGVQITESGKFHVDD--------EGTLTIYDAGFPDQ 575

Query: 62  GYYECVADNPFAI 74
           G YECVA N F +
Sbjct: 576 GRYECVARNSFGL 588

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9NR99|MXRA5_HUMAN Matrix-remodeling-associated protein 5 OS=Homo sapiens GN=MXRA5 PE=2 SV=3

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 3    GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTI--KSKMEIDPATQKD 60
            G  +   CMA G P+  ITW   D     H    V     GN  +  +  + I  ATQ+D
Sbjct: 2748 GNTVKLNCMAMGIPKADITWELPDKS---HLKAGVQARLYGNRFLHPQGSLTIQHATQRD 2804

Query: 61   AGYYECVADNPFAIDRR 77
            AG+Y+C+A N    D +
Sbjct: 2805 AGFYKCMAKNILGSDSK 2821

Homo sapiens (taxid: 9606)

>sp|Q92626|PXDN_HUMAN Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 10/70 (14%)

Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVH-EWFLGNNTIKSKMEIDPATQKD 60
           +G  +   C ++G P P ITW KD +++T    F +  E FL  N      ++ PA   D
Sbjct: 538 VGANVQLPCSSQGEPEPAITWNKDGVQVTESGKFHISPEGFLTIN------DVGPA---D 588

Query: 61  AGYYECVADN 70
           AG YECVA N
Sbjct: 589 AGRYECVARN 598

Displays low peroxidase activity and is likely to participate in H(2)O(2) metabolism and peroxidative reactions in the cardiovascular system. Plays a role in extracellular matrix formation.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELT-FHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           G +++  C A G+P+P I WT +D+ +   H+Y           T    + I  A  KDA
Sbjct: 626 GSEVSIMCSATGYPKPKIAWTVNDMFIVGSHRY---------RMTSDGTLFIKNAAPKDA 676

Query: 62  GYYECVADNPFAIDRR 77
           G Y C+A N    D++
Sbjct: 677 GIYGCLASNSAGTDKQ 692

Homo sapiens (taxid: 9606)

>sp|Q9BWV1|BOC_HUMAN Brother of CDO OS=Homo sapiens GN=BOC PE=1 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 9/68 (13%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G+ +   C+A G P P +TW KD   +T +   +    FL +N +     ID  +++D+G
Sbjct: 245 GQSLILECVASGIPPPRVTWAKDGSSVTGYNKTR----FLLSNLL-----IDTTSEEDSG 295

Query: 63  YYECVADN 70
            Y C+ADN
Sbjct: 296 TYRCMADN 303

Component of a cell-surface receptor complex that mediates cell-cell interactions between muscle precursor cells. Promotes differentiation of myogenic cells.

Homo sapiens (taxid: 9606)

>sp|Q24372|LACH_DROME Lachesin OS=Drosophila melanogaster GN=Lac PE=2 SV=2

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%)

Query: 10  CMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD 69
           C  E +P P I WTKDDI+L  ++++ +  +   +    S + +    ++  G Y C A 
Sbjct: 247 CHIEAYPPPAIVWTKDDIQLANNQHYSISHFATADEYTDSTLRVITVEKRQYGDYVCKAT 306

Query: 70  NPFA 73
           N F 
Sbjct: 307 NRFG 310

Required for normal tracheal development and maintenance of the trans-epithelial diffusion barrier. Functions as a homophilic cell-adhesion molecule. May play a role in early neuronal differentiation and axon outgrowth.

Drosophila melanogaster (taxid: 7227)

>sp|P31836|NCAM1_BOVIN Neural cell adhesion molecule 1 OS=Bos taurus GN=NCAM1 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           LG+ +T  C AEGFP P ++WTKD  ++      +  ++   +++  S++ I    + D 
Sbjct: 227 LGQSVTLVCNAEGFPEPTVSWTKDGEQIENE---EDEKYLFSDDS--SELTIRKVDKNDE 281

Query: 62  GYYECVADN 70
             Y C+A+N
Sbjct: 282 AEYVCIAEN 290

This protein is a cell adhesion molecule involved in neuron-neuron adhesion, neurite fasciculation, outgrowth of neurites, etc.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
383851268	164	PREDICTED: contactin-5-like [Megachile r	1.0	0.506	0.819	1e-34
242016163	174	conserved hypothetical protein [Pediculu	1.0	0.477	0.831	1e-34
380020403	164	PREDICTED: contactin-5-like [Apis florea	1.0	0.506	0.819	1e-34
350421690	164	PREDICTED: contactin-5-like [Bombus impa	1.0	0.506	0.819	1e-34
94158681	122	uncharacterized protein LOC678510 [Apis	1.0	0.680	0.819	2e-34
340726804	164	PREDICTED: hypothetical protein LOC10064	1.0	0.506	0.795	2e-33
270007714	162	hypothetical protein TcasGA2_TC014408 [T	1.0	0.512	0.795	4e-33
198466224	208	GA20476 [Drosophila pseudoobscura pseudo	0.987	0.394	0.731	5e-28
195441574	166	GK20343 [Drosophila willistoni] gi|19416	0.987	0.493	0.731	7e-28
195493377	167	GE21799 [Drosophila yakuba] gi|194180491	0.987	0.491	0.719	9e-28

>gi|383851268|ref|XP_003701156.1| PREDICTED: contactin-5-like [Megachile rotundata]

 Score =  150 bits (379), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/83 (81%), Positives = 74/83 (89%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           MLGRKITFFCMA GFPRP ITW KD IEL  HK+FQVHEW +GN+T+KSKMEIDPATQKD
Sbjct: 77  MLGRKITFFCMATGFPRPEITWLKDGIELYHHKFFQVHEWPVGNDTLKSKMEIDPATQKD 136

Query: 61  AGYYECVADNPFAIDRRGFRTDY 83
           AGYYEC ADN +A+DRRGFRTDY
Sbjct: 137 AGYYECQADNQYAVDRRGFRTDY 159

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016163|ref|XP_002428705.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212513376|gb|EEB15967.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/83 (83%), Positives = 74/83 (89%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           MLGRKITFFCMA+GFPRP ITW KD IEL  HK+FQVHEW LGN+T+KSKMEIDP TQKD
Sbjct: 87  MLGRKITFFCMAKGFPRPQITWFKDGIELYAHKFFQVHEWPLGNDTMKSKMEIDPTTQKD 146

Query: 61  AGYYECVADNPFAIDRRGFRTDY 83
           AGYYEC ADN +AIDRRGFRTDY
Sbjct: 147 AGYYECQADNQYAIDRRGFRTDY 169

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020403|ref|XP_003694076.1| PREDICTED: contactin-5-like [Apis florea]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/83 (81%), Positives = 74/83 (89%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           MLGRKITFFCMA GFPRP ITW KD IEL  HK+FQVHEW +GN+T+KSKMEIDPATQKD
Sbjct: 77  MLGRKITFFCMATGFPRPEITWLKDGIELYHHKFFQVHEWPVGNDTLKSKMEIDPATQKD 136

Query: 61  AGYYECVADNPFAIDRRGFRTDY 83
           AGYYEC ADN +A+DRRGFRTDY
Sbjct: 137 AGYYECQADNQYAVDRRGFRTDY 159

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350421690|ref|XP_003492925.1| PREDICTED: contactin-5-like [Bombus impatiens]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/83 (81%), Positives = 74/83 (89%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           MLGRKITFFCMA GFPRP ITW KD IEL  HK+FQVHEW +GN+T+KSKMEIDPATQKD
Sbjct: 77  MLGRKITFFCMATGFPRPEITWLKDGIELYHHKFFQVHEWPVGNDTLKSKMEIDPATQKD 136

Query: 61  AGYYECVADNPFAIDRRGFRTDY 83
           AGYYEC ADN +A+DRRGFRTDY
Sbjct: 137 AGYYECQADNQYAVDRRGFRTDY 159

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|94158681|ref|NP_001035293.1| uncharacterized protein LOC678510 [Apis mellifera] gi|89274060|dbj|BAE80739.1| GB15078 [Apis mellifera]

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/83 (81%), Positives = 74/83 (89%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           MLGRKITFFCMA GFPRP ITW KD IEL  HK+FQVHEW +GN+T+KSKMEIDPATQKD
Sbjct: 35  MLGRKITFFCMATGFPRPEITWLKDGIELYHHKFFQVHEWPVGNDTLKSKMEIDPATQKD 94

Query: 61  AGYYECVADNPFAIDRRGFRTDY 83
           AGYYEC ADN +A+DRRGFRTDY
Sbjct: 95  AGYYECQADNQYAVDRRGFRTDY 117

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726804|ref|XP_003401743.1| PREDICTED: hypothetical protein LOC100645850 [Bombus terrestris]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 66/83 (79%), Positives = 72/83 (86%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           MLGRKITFFCMA G PRP ITW KD IEL  HK+FQVH W +GN+T+KSKMEIDPATQKD
Sbjct: 77  MLGRKITFFCMATGVPRPEITWLKDGIELYHHKFFQVHVWSVGNDTLKSKMEIDPATQKD 136

Query: 61  AGYYECVADNPFAIDRRGFRTDY 83
           AGYYEC ADN +A+DRRGFRTDY
Sbjct: 137 AGYYECQADNQYAVDRRGFRTDY 159

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007714|gb|EFA04162.1| hypothetical protein TcasGA2_TC014408 [Tribolium castaneum]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/83 (79%), Positives = 73/83 (87%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           MLGRKITFFCMA+G+PRP ITW KD IEL  HK+FQVHEW LGN+T+KSKMEIDP TQKD
Sbjct: 75  MLGRKITFFCMAQGYPRPEITWFKDGIELYAHKFFQVHEWPLGNDTVKSKMEIDPTTQKD 134

Query: 61  AGYYECVADNPFAIDRRGFRTDY 83
           AGYYEC A+N +AID RGFRTDY
Sbjct: 135 AGYYECQANNKYAIDTRGFRTDY 157

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198466224|ref|XP_001353932.2| GA20476 [Drosophila pseudoobscura pseudoobscura] gi|198150502|gb|EAL29668.2| GA20476 [Drosophila pseudoobscura pseudoobscura]

 Score =  128 bits (321), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/82 (73%), Positives = 66/82 (80%)

Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           LGRKITFFCMA+G PRP ITW KD  EL  H++FQVHE  +  + IKSKMEIDP TQ DA
Sbjct: 122 LGRKITFFCMAQGNPRPTITWFKDGAELYQHRFFQVHESHIETDIIKSKMEIDPTTQMDA 181

Query: 62  GYYECVADNPFAIDRRGFRTDY 83
           GYYEC ADN +AIDRRGFRTDY
Sbjct: 182 GYYECQADNIYAIDRRGFRTDY 203

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195441574|ref|XP_002068581.1| GK20343 [Drosophila willistoni] gi|194164666|gb|EDW79567.1| GK20343 [Drosophila willistoni]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 60/82 (73%), Positives = 66/82 (80%)

Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           LGRKITFFCMA+G PRP ITW KD  EL  H++FQVHE  +  + IKSKMEIDP TQ DA
Sbjct: 80  LGRKITFFCMAQGNPRPTITWFKDGAELYQHRFFQVHESHIETDIIKSKMEIDPTTQMDA 139

Query: 62  GYYECVADNPFAIDRRGFRTDY 83
           GYYEC ADN +AIDRRGFRTDY
Sbjct: 140 GYYECQADNIYAIDRRGFRTDY 161

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195493377|ref|XP_002094390.1| GE21799 [Drosophila yakuba] gi|194180491|gb|EDW94102.1| GE21799 [Drosophila yakuba]

 Score =  127 bits (319), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 59/82 (71%), Positives = 66/82 (80%)

Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           LGRKITFFCMA+G PRP ITW KD  EL  H++FQVHE  +  N +KSKMEIDP TQ DA
Sbjct: 81  LGRKITFFCMAQGNPRPTITWFKDGAELYQHRFFQVHESHIEANIVKSKMEIDPTTQMDA 140

Query: 62  GYYECVADNPFAIDRRGFRTDY 83
           G+YEC ADN +AIDRRGFRTDY
Sbjct: 141 GFYECQADNIYAIDRRGFRTDY 162

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
WB|WBGene00043050	155	oig-4 [Caenorhabditis elegans	0.987	0.529	0.414	1.6e-13
ZFIN|ZDB-GENE-030131-6560	1032	boc "brother of CDO" [Danio re	0.686	0.055	0.371	3.7e-06
UNIPROTKB|F5GWT7	1502	PTPRD "Receptor-type tyrosine-	0.807	0.044	0.352	1.9e-05
UNIPROTKB|E1C0J7	1411	PXDNL "Uncharacterized protein	0.746	0.043	0.385	2.3e-05
UNIPROTKB|E1C0J1	1424	PXDNL "Uncharacterized protein	0.746	0.043	0.385	2.3e-05
UNIPROTKB|E1BE11	5588	HMCN1 "Uncharacterized protein	0.795	0.011	0.355	2.9e-05
ZFIN|ZDB-GENE-070615-10	565	nrg2a "neuregulin 2a" [Danio r	0.759	0.111	0.367	4.3e-05
FB|FBgn0010238	359	Lac "Lachesin" [Drosophila mel	0.759	0.175	0.301	4.6e-05
UNIPROTKB|F1LM72	1386	Ptprd "Protein Ptprd" [Rattus	0.807	0.048	0.352	4.7e-05
UNIPROTKB|F1PKU2	1429	PXDNL "Uncharacterized protein	0.783	0.045	0.383	4.9e-05

WB|WBGene00043050 oig-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 34/82 (41%), Positives = 47/82 (57%)

Query:     2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
             LG K+   C A G PRP I W K+  E+        +E  + N+TI SK+E+DPAT  D 
Sbjct:    72 LGYKLLIICKARGDPRPTIKWYKEGAEIQPKASIHYYEKPIENDTIWSKLEVDPATMGDQ 131

Query:    62 GYYECVADNPFAIDRRGFRTDY 83
             G Y CVA+NP  +  + F+ +Y
Sbjct:   132 GVYACVANNPHGVMAKNFKAEY 153

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0005615 "extracellular space" evidence=IDA

ZFIN|ZDB-GENE-030131-6560 boc "brother of CDO" [Danio rerio (taxid:7955)]

 Score = 120 (47.3 bits), Expect = 3.7e-06, P = 3.7e-06
 Identities = 26/70 (37%), Positives = 39/70 (55%)

Query:     3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNT--IKSKMEIDPATQKD 60
             G+++   C+A G P P +TW KD ++L  H           NNT  + S + ID A++ D
Sbjct:   250 GQRLVLECVASGIPTPQVTWAKDGLDLRNH-----------NNTRFLLSNLLIDAASESD 298

Query:    61 AGYYECVADN 70
             +G Y C+ADN
Sbjct:   299 SGTYVCLADN 308

GO:0008589 "regulation of smoothened signaling pathway" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0007411 "axon guidance" evidence=IMP

GO:0031290 "retinal ganglion cell axon guidance" evidence=IMP

GO:0042802 "identical protein binding" evidence=IDA

UNIPROTKB|F5GWT7 PTPRD "Receptor-type tyrosine-protein phosphatase delta" [Homo sapiens (taxid:9606)]

 Score = 115 (45.5 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 24/68 (35%), Positives = 36/68 (52%)

Query:     4 RKITFFCMAEGFPRPHITWTKDDIEL-TFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
             R  T  C A G P P ITW KD + + T +   ++ +   G   I+  ++I+ + + D G
Sbjct:   141 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSGGTPIRGALQIEQSEESDQG 200

Query:    63 YYECVADN 70
              YECVA N
Sbjct:   201 KYECVATN 208

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|E1C0J7 PXDNL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 114 (45.2 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 27/70 (38%), Positives = 39/70 (55%)

Query:     3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
             G+ +   C A+G PRP ITW K+ I++T    F V +    + T+ S  ++  A   D G
Sbjct:   528 GQDVAITCAAQGDPRPTITWVKEGIQITESGKFHVSQ----DGTL-SIQDLGVA---DQG 579

Query:    63 YYECVADNPF 72
              YEC+A NPF
Sbjct:   580 RYECIARNPF 589

GO:0004601 "peroxidase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

UNIPROTKB|E1C0J1 PXDNL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 114 (45.2 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 27/70 (38%), Positives = 39/70 (55%)

Query:     3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
             G+ +   C A+G PRP ITW K+ I++T    F V +    + T+ S  ++  A   D G
Sbjct:   528 GQDVAITCAAQGDPRPTITWVKEGIQITESGKFHVSQ----DGTL-SIQDLGVA---DQG 579

Query:    63 YYECVADNPF 72
              YEC+A NPF
Sbjct:   580 RYECIARNPF 589

GO:0004601 "peroxidase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

UNIPROTKB|E1BE11 HMCN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 119 (46.9 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 27/76 (35%), Positives = 41/76 (53%)

Query:     3 GRKITFFCMAEGFPRPHITWTKDDIELT-FHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
             G +++  C A G+P+P I WT +D+ +   H+Y    E   GN  IK+      A  KDA
Sbjct:   575 GSEVSIMCSATGYPKPKIAWTMNDVFIMGSHRYRMTSE---GNLFIKN------AVPKDA 625

Query:    62 GYYECVADNPFAIDRR 77
             G Y C+A N   +D++
Sbjct:   626 GIYGCLASNSAGMDKQ 641

GO:0030054 "cell junction" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

ZFIN|ZDB-GENE-070615-10 nrg2a "neuregulin 2a" [Danio rerio (taxid:7955)]

 Score = 107 (42.7 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 25/68 (36%), Positives = 34/68 (50%)

Query:     3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
             G ++   C A G P P   W KD  EL   K  ++      NN   SK++I  A  +D+G
Sbjct:    10 GSRLIVKCEATGSPAPEYKWYKDGAELKRSKEIKIR-----NNKKNSKVQIGSAKLEDSG 64

Query:    63 YYECVADN 70
              Y CVA+N
Sbjct:    65 NYTCVAEN 72

GO:0005102 "receptor binding" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0001755 "neural crest cell migration" evidence=IGI

GO:0007422 "peripheral nervous system development" evidence=IMP

FB|FBgn0010238 Lac "Lachesin" [Drosophila melanogaster (taxid:7227)]

 Score = 104 (41.7 bits), Expect = 4.6e-05, P = 4.6e-05
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query:    10 CMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD 69
             C  E +P P I WTKDDI+L  ++++ +  +   +    S + +    ++  G Y C A 
Sbjct:   247 CHIEAYPPPAIVWTKDDIQLANNQHYSISHFATADEYTDSTLRVITVEKRQYGDYVCKAT 306

Query:    70 NPF 72
             N F
Sbjct:   307 NRF 309

GO:0007409 "axonogenesis" evidence=ISS

GO:0019898 "extrinsic to membrane" evidence=NAS

GO:0007424 "open tracheal system development" evidence=IEP;IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0035160 "maintenance of epithelial integrity, open tracheal system" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0005918 "septate junction" evidence=IDA

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP

GO:0019991 "septate junction assembly" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1LM72 Ptprd "Protein Ptprd" [Rattus norvegicus (taxid:10116)]

 Score = 111 (44.1 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 25/71 (35%), Positives = 34/71 (47%)

Query:     4 RKITFFCMAEGFPRPHITWTKD----DIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
             R  T  C A G P P ITW KD    D      +  Q+    +G   I+  ++I+ + + 
Sbjct:    26 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGGTPIRGALQIEQSEES 85

Query:    60 DAGYYECVADN 70
             D G YECVA N
Sbjct:    86 DQGKYECVATN 96

GO:0004725 "protein tyrosine phosphatase activity" evidence=IEA

UNIPROTKB|F1PKU2 PXDNL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 111 (44.1 bits), Expect = 4.9e-05, P = 4.9e-05
 Identities = 28/73 (38%), Positives = 37/73 (50%)

Query:     2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
             +G+ I   C AEG P+P ITW K  +++T    F V     G    +  + I  A Q D 
Sbjct:   485 VGKNINISCHAEGEPQPIITWNKAGVQITESGKFHVS----G----EGMLTIYDAGQADQ 536

Query:    62 GYYECVADNPFAI 74
             G YECVA N F +
Sbjct:   537 GRYECVAQNSFGL 549

GO:0020037 "heme binding" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0004601 "peroxidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	83
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	1e-14
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	7e-13
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-12
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-11
smart00409	85	smart00409, IG, Immunoglobulin	1e-11
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	3e-10
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	3e-08
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	1e-07
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	1e-07
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	1e-07
pfam00047	62	pfam00047, ig, Immunoglobulin domain	3e-07
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	3e-07
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	1e-06
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	1e-06
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	3e-06
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	1e-05
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	2e-05
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	2e-05
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	2e-05
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	2e-05
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	3e-05
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	3e-05
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	5e-05
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	5e-05
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	7e-05
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	7e-05
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	8e-05
cd00098	95	cd00098, IgC, Immunoglobulin Constant domain	1e-04
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	2e-04
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	2e-04
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	5e-04
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	6e-04
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	8e-04
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	0.001
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	0.001
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	0.001
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	0.002
cd05858	90	cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-lik	0.002
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	0.002
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	0.002
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	0.002
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	0.002
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	0.003
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	0.004
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	0.004

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 61.7 bits (150), Expect = 1e-14
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 9/69 (13%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G+ +T  C AEG P P+ITW KD   L     F      L          I   + +D+G
Sbjct: 2  GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTL---------TIKSVSLEDSG 52

Query: 63 YYECVADNP 71
           Y CVA+N 
Sbjct: 53 LYTCVAENS 61

Length = 63

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 57.7 bits (140), Expect = 7e-13
 Identities = 20/70 (28%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G    F C   G P P ++W KD   L     F+V             + I      D G
Sbjct: 15 GESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVT-----YEGGTYTLTISNVQPDDEG 69

Query: 63 YYECVADNPF 72
           Y CVA N  
Sbjct: 70 KYTCVATNSA 79

Length = 90

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 56.7 bits (136), Expect = 2e-12
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 6  ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE 65
          +T  C+A G P P ITW K+   L      +V     G ++  S + I   T +D+G Y 
Sbjct: 1  VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSR-GTSSGSSTLTISNVTLEDSGTYT 59

Query: 66 CVADNPFAIDRRGFR 80
          CVA N          
Sbjct: 60 CVASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 54.8 bits (132), Expect = 1e-11
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIE-LTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
            G  +T  C A G P P +TW K   + L     F V       +   S + I   T +
Sbjct: 7  KEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVS-----RSGSTSTLTISNVTPE 61

Query: 60 DAGYYECVADNPFAIDRRGFR 80
          D+G Y C A N       G  
Sbjct: 62 DSGTYTCAATNSSGSASSGTT 82

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 54.8 bits (132), Expect = 1e-11
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIE-LTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
            G  +T  C A G P P +TW K   + L     F V       +   S + I   T +
Sbjct: 7  KEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVS-----RSGSTSTLTISNVTPE 61

Query: 60 DAGYYECVADNPFAIDRRGFR 80
          D+G Y C A N       G  
Sbjct: 62 DSGTYTCAATNSSGSASSGTT 82

Length = 85

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 50.6 bits (121), Expect = 3e-10
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 8/63 (12%)

Query: 10 CMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD 69
          C A+G P P ITW KD +++T    F +          +  + I      D G YECVA 
Sbjct: 5  CSAQGDPEPTITWNKDGVQVTESGKFHISP--------EGYLAIRDVGVADQGRYECVAR 56

Query: 70 NPF 72
          N  
Sbjct: 57 NTI 59

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 46.1 bits (109), Expect = 3e-08
 Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 10/71 (14%)

Query: 2  LGRKITFFCMAEGFPRPHITWTKDD--IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
          LG+ +T  C A+GFP P +TWTKD   IE    KY          N   S+M I    + 
Sbjct: 17 LGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKY--------SFNEDGSEMTILDVDKL 68

Query: 60 DAGYYECVADN 70
          D   Y C+A+N
Sbjct: 69 DEAEYTCIAEN 79

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 44.2 bits (104), Expect = 1e-07
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G+ + F C A+G+P+P I WTK   +L+  +   V    L + T++    I      D G
Sbjct: 2  GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLV----LSSGTLR----ISRVALHDQG 53

Query: 63 YYECVADNPFAIDR 76
           YEC A N     R
Sbjct: 54 QYECQAVNIVGSQR 67

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 43.9 bits (104), Expect = 1e-07
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 16/66 (24%)

Query: 10 CMAEGFPRPHITWTKDDIEL----TFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE 65
          C+AEG P P I+W K   EL    T  + F        N T+K    ID  +++D G Y 
Sbjct: 5  CIAEGLPTPEISWIKIGGELPADRTKFENF--------NKTLK----IDNVSEEDDGEYR 52

Query: 66 CVADNP 71
          C A N 
Sbjct: 53 CTASNS 58

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 44.1 bits (104), Expect = 1e-07
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 10 CMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD 69
          C AEG P P +TW K+ +++T     Q+    + N    S++ I     +D G Y C+A 
Sbjct: 5  CHAEGIPLPRLTWLKNGMDITPKLSKQLT--LIANG---SELHISNVRYEDTGAYTCIAK 59

Query: 70 NPFAIDR 76
          N   +D 
Sbjct: 60 NEAGVDE 66

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 42.9 bits (101), Expect = 3e-07
 Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 6/63 (9%)

Query: 7  TFFCMAEGFPRPHITWTKDD-IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE 65
          T  C   G P+  +TW K+                   N      + I   T +D+G Y 
Sbjct: 5  TLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDE-----NRVSSITLTISNVTPEDSGTYT 59

Query: 66 CVA 68
          CV 
Sbjct: 60 CVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 43.2 bits (102), Expect = 3e-07
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 15/61 (24%)

Query: 14 GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK----SKMEIDPATQKDAGYYECVAD 69
          G P P ++W KD   L            L N  ++      + I  A + D G Y+CVA 
Sbjct: 23 GHPEPTVSWRKDGQPLN-----------LDNERVRIVDDGNLLIAEARKSDEGTYKCVAT 71

Query: 70 N 70
          N
Sbjct: 72 N 72

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 41.8 bits (99), Expect = 1e-06
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 14 GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA 73
          G P P +TW+KD   L      Q+           + + I  A + D+G Y     NP  
Sbjct: 10 GRPTPTVTWSKDGKPLKLSGRVQIE-----TTASSTSLVIKNAERSDSGKYTLTLKNPAG 64

Query: 74 ID 75
            
Sbjct: 65 EK 66

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 41.3 bits (97), Expect = 1e-06
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 8/70 (11%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G  +   C  +  P+P I+W+K    LT     ++  W  G+      +EI   T+ D G
Sbjct: 1  GGDVIIECKPKAAPKPTISWSKGTELLTNSS--RICIWPDGS------LEILNVTKSDEG 52

Query: 63 YYECVADNPF 72
           Y C A+N F
Sbjct: 53 KYTCFAENFF 62

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 40.1 bits (94), Expect = 3e-06
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 6  ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE 65
          + F C   G P P + W K+D EL   +        L + ++K    I   T  D G Y 
Sbjct: 1  VEFQCEVGGDPVPTVLWRKEDGELPKGRAEI-----LDDKSLK----IRNVTAGDEGSYT 51

Query: 66 CVADN 70
          C A+N
Sbjct: 52 CEAEN 56

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 39.2 bits (91), Expect = 1e-05
 Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 12/80 (15%)

Query: 2  LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFL-GNNTIKSKMEIDPATQK- 59
          L  +IT  C A G P P ITW       T  +     E  L G+  ++S   +   T K 
Sbjct: 16 LEEQITLTCEASGDPIPSITWR------TSTRNISSEEKTLDGHIVVRSHARVSSLTLKY 69

Query: 60 ----DAGYYECVADNPFAID 75
              DAG Y C A N    D
Sbjct: 70 IQYTDAGEYLCTASNTIGQD 89

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 38.5 bits (89), Expect = 2e-05
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 7  TFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK----SKMEIDPATQKDAG 62
          T  C A G P P ITW KD + +              N  IK      ++I+ + + D G
Sbjct: 2  TMLCAASGNPDPEITWFKDFLPVDTT----------SNGRIKQLRSGALQIENSEESDQG 51

Query: 63 YYECVADN 70
           YECVA N
Sbjct: 52 KYECVATN 59

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 38.5 bits (89), Expect = 2e-05
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 3  GRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
          G  +T  C AEG P P  I+W ++                 G  +  S + +   T +D+
Sbjct: 15 GGGVTLTCSAEGGPPPPTISWYRNGSISGGSG---------GLGSSGSTLTLSSVTSEDS 65

Query: 62 GYYECVADN 70
          G Y CVA N
Sbjct: 66 GTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 38.8 bits (90), Expect = 2e-05
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 11/74 (14%)

Query: 5  KITFFCMAEGFPRPHITWTKD--DIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          K++  C A   P P   W K+  DI+LT  +Y  V     G N + +    +P   KDAG
Sbjct: 21 KVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV-----GGNLVIN----NPDKYKDAG 71

Query: 63 YYECVADNPFAIDR 76
           Y C+  N +   R
Sbjct: 72 RYVCIVSNIYGKVR 85

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 38.3 bits (89), Expect = 2e-05
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 2  LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
          +G  +   C+A G PRP ITW KD+  LT  +  +       +   K  + +     +D+
Sbjct: 8  VGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE-------SRKKKWTLSLKNLKPEDS 60

Query: 62 GYYECVADN 70
          G Y C   N
Sbjct: 61 GKYTCHVSN 69

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 38.3 bits (89), Expect = 3e-05
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 12 AEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN 70
             +P     W KD  EL      +     + N    S+++I+ A   D+G Y CV +N
Sbjct: 8  TSEYPSLRFKWFKDGKELNRKN--KPRNIKIRNKKKNSELQINKAKLADSGEYTCVVEN 64

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 38.0 bits (88), Expect = 3e-05
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 12/67 (17%)

Query: 6  ITFFCMAEGFPRPHITWTKDDIELTFH--KYFQVHEWFLGNNTIKSKMEIDPATQKDAGY 63
          +   C+AEG P P + W + D  L+ +  K    ++           +++D   + D G 
Sbjct: 1  LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKT----------LQLDNVLESDDGE 50

Query: 64 YECVADN 70
          Y C A+N
Sbjct: 51 YVCTAEN 57

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 37.8 bits (88), Expect = 5e-05
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
          + G+ +T  C A G P P I W K D  +       +    L         +I     +D
Sbjct: 14 LKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVL---------KIPNIQFED 64

Query: 61 AGYYECVADN 70
           G YEC A+N
Sbjct: 65 EGTYECEAEN 74

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 37.5 bits (87), Expect = 5e-05
 Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 3  GRKITFFCMAEGFPRPHITWTK--DDIELTFHKYFQVHEWFLGNNTIKS--KMEIDPATQ 58
          G   +F C   G P P ITW K     E    +   V     GN  + +  ++ I  A  
Sbjct: 1  GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVR----GNVVVTNIGQLVIYNAQP 56

Query: 59 KDAGYYECVADNPFAIDRRGF 79
          +DAG Y C A N   + R  F
Sbjct: 57 QDAGLYTCTARNSGGLLRANF 77

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 37.4 bits (87), Expect = 7e-05
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 12/73 (16%)

Query: 5  KITFFCMAEGFPRPHITWTKDDIELTF---HKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
          K++  C A G P P   W  +  E+      +Y  V     G N + S    +P+  KDA
Sbjct: 21 KVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV-----GGNLVIS----NPSKAKDA 71

Query: 62 GYYECVADNPFAI 74
          G Y+C+A N    
Sbjct: 72 GRYQCLASNIVGT 84

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 37.2 bits (86), Expect = 7e-05
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 9/61 (14%)

Query: 10 CMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD 69
          C A G PRP   W K+   L      +V       +   +K+ +      D+G Y+CVA+
Sbjct: 21 CKASGNPRPAYRWLKNGQPLASENRIEV----EAGDLRITKLSLS-----DSGMYQCVAE 71

Query: 70 N 70
          N
Sbjct: 72 N 72

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 37.0 bits (86), Expect = 8e-05
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 2  LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           G  +   C A G PRP ITW KD            ++      T+     ++     D+
Sbjct: 8  AGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLI----LESVVPSDS 63

Query: 62 GYYECVADN 70
          G Y C+ +N
Sbjct: 64 GKYTCIVEN 72

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143166 cd00098, IgC, Immunoglobulin Constant domain

 Score = 36.7 bits (85), Expect = 1e-04
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 5/73 (6%)

Query: 1  MLGRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEWFLGNNT--IKSKMEIDPA 56
          +LG  +T  C+A GF P    +TW K+  ELT             + T  + S++ + P+
Sbjct: 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPV-PNSDGTYSVSSQLTVSPS 69

Query: 57 TQKDAGYYECVAD 69
                 Y CV  
Sbjct: 70 DWNSGDTYTCVVT 82

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. Length = 95

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 35.9 bits (83), Expect = 2e-04
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 15/69 (21%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G  +T  C A G P P+ TW KD + L+          F   N           + +D+G
Sbjct: 14 GEDVTLTCSAPGNPPPNYTWYKDGVPLS-----SSQNGFFTPN----------VSAEDSG 58

Query: 63 YYECVADNP 71
           Y CVA N 
Sbjct: 59 TYTCVASNG 67

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 35.7 bits (82), Expect = 2e-04
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 6  ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE 65
          I F C   G P P + W K+   +    YF++ +        +  +++    + D G+Y+
Sbjct: 2  IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVK--------EHNLQVLGLVKSDEGFYQ 53

Query: 66 CVADN 70
          C+A+N
Sbjct: 54 CIAEN 58

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 34.6 bits (79), Expect = 5e-04
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 10 CMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVA 68
          C   G P P I W K++  LT +     +H+    +N     + I  AT++DAG+Y   A
Sbjct: 5  CRVSGVPHPQIFWKKENESLTHNTDRVSMHQ----DNCGYICLLIQGATKEDAGWYTVSA 60

Query: 69 DNPFAI 74
           N   I
Sbjct: 61 KNEAGI 66

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 34.9 bits (80), Expect = 6e-04
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKY--FQVHEWFLGNNTIKSKMEIDPATQKD 60
          GR +TF C A G P+P I W K+  +     Y   Q    F  + T    + I    + D
Sbjct: 1  GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQT--GDLTITNVQRSD 58

Query: 61 AGYYECVADN 70
           GYY C   N
Sbjct: 59 VGYYICQTLN 68

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 34.4 bits (79), Expect = 8e-04
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 10 CMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVA 68
          C     P P I W K++  LT++     +++    +N  +  + I  A ++DAG+Y   A
Sbjct: 5  CRVSAIPPPQIFWKKNNEMLTYNTDRISLYQ----DNCGRICLLIQNANKEDAGWYTVSA 60

Query: 69 DN 70
           N
Sbjct: 61 VN 62

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 34.4 bits (79), Expect = 0.001
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 9/74 (12%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTF----HKYFQVHEWFLGNNTIKSKMEIDPA 56
          + G  +   C AEG P P I W KD + L       +    +   L  + + SK      
Sbjct: 12 VRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHN---- 67

Query: 57 TQKDAGYYECVADN 70
           + D G+Y+CVA N
Sbjct: 68 -KPDEGFYQCVAQN 80

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 33.6 bits (77), Expect = 0.001
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 17/74 (22%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTI-----KSKMEIDPAT 57
          G++ T  C A G P P I W   D +L            + N++         ++I   T
Sbjct: 1  GQRATLRCKARGDPEPAIHWISPDGKL------------ISNSSRTLVYDNGTLDILITT 48

Query: 58 QKDAGYYECVADNP 71
           KD G + C+A N 
Sbjct: 49 VKDTGSFTCIASNA 62

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 34.1 bits (78), Expect = 0.001
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIEL-TFHKYFQVHEWFLGNNTIKSKMEIDPA--TQK 59
          G   T  C AEG P P I W K+   L T     + H   L + ++   + +      + 
Sbjct: 16 GDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSL-FFLRVVHGRKGRS 74

Query: 60 DAGYYECVADNPF 72
          D G Y CVA N  
Sbjct: 75 DEGVYVCVAHNSL 87

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 33.8 bits (77), Expect = 0.002
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 5  KITFFCMAEGFPRPHITWTKDDIELTF---HKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
          K+T  C A   P     W  +  E+ F    +Y  V     GN  I      +P   +DA
Sbjct: 21 KVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVA----GNLVIN-----NPQKARDA 71

Query: 62 GYYECVADNP 71
          G Y+C+A N 
Sbjct: 72 GSYQCLAINR 81

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|143266 cd05858, Ig3_FGFR-2, Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

 Score = 33.8 bits (77), Expect = 0.002
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 10/81 (12%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFL------GNNTIKSKMEI--- 53
          G  + F C      +PHI W K  +E    KY      ++      G NT   +ME+   
Sbjct: 1  GSTVEFVCKVYSDAQPHIQWLK-HVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYL 59

Query: 54 DPATQKDAGYYECVADNPFAI 74
             T +DAG Y C+A N   I
Sbjct: 60 RNVTFEDAGEYTCLAGNSIGI 80

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. Length = 90

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 33.8 bits (77), Expect = 0.002
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 4  RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY 63
          +K+   C A G P P   W ++  E+     ++ +    GN  I      +P+  KD+G 
Sbjct: 20 KKVILNCEARGNPVPTYRWLRNGTEIDTESDYR-YSLIDGNLIIS-----NPSEVKDSGR 73

Query: 64 YECVADNPFAI 74
          Y+C+A N    
Sbjct: 74 YQCLATNSIGS 84

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 33.9 bits (77), Expect = 0.002
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G    F C  +G P P +TW ++   +   +  Q+      +   KS  EI      D G
Sbjct: 18 GESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQI-----TSTEYKSTFEISKVQMSDEG 72

Query: 63 YYECVADN 70
           Y  V +N
Sbjct: 73 NYTVVVEN 80

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 33.7 bits (77), Expect = 0.002
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 8/74 (10%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDD--IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
          M G+ +   C   G P P + W K+D  IEL+ H   ++ +    + TIK        T 
Sbjct: 14 MEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKG------VTS 67

Query: 59 KDAGYYECVADNPF 72
          +D+G Y     N +
Sbjct: 68 EDSGKYSINVKNKY 81

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 33.1 bits (76), Expect = 0.002
 Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 8/66 (12%)

Query: 7  TFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ-KDAGYYE 65
             C AEG P+P ITW  + + +                 +     I    Q  D   Y+
Sbjct: 5  RLDCEAEGIPQPTITWRLNGVPIEELPPDPR-------RRVDGGTLILSNVQPNDTAVYQ 57

Query: 66 CVADNP 71
          C A N 
Sbjct: 58 CNASNV 63

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 33.0 bits (75), Expect = 0.003
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 12/70 (17%)

Query: 6  ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSK---MEIDPATQKDAG 62
          +T  C  +G PRP   W +D   L+  +         GN ++ SK   + +  A   D+G
Sbjct: 1  VTLRCHIDGHPRPTYQWFRDGTPLSDGQ---------GNYSVSSKERTLTLRSAGPDDSG 51

Query: 63 YYECVADNPF 72
           Y C A N F
Sbjct: 52 LYYCCAHNAF 61

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 32.9 bits (75), Expect = 0.004
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 12/83 (14%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFL-GNNTIKSKMEIDPATQK 59
          +   +IT  C AEG P P ITW          + F   +  L G   ++    +   T K
Sbjct: 14 VELEQITLTCEAEGDPIPEITWR------RATRNFSEGDKSLDGRIVVRGHARVSSLTLK 67

Query: 60 -----DAGYYECVADNPFAIDRR 77
               DAG Y+C A N    D++
Sbjct: 68 DVQLTDAGRYDCEASNRIGGDQQ 90

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 32.3 bits (73), Expect = 0.004
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 16/72 (22%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTI----KSKMEIDPATQ 58
          G ++   C  +  P+P  +W+K              E  + N+ I       +EI   T+
Sbjct: 1  GGRVIIECKPKAAPKPKFSWSKGT------------ELLVNNSRISIWDDGSLEILNITK 48

Query: 59 KDAGYYECVADN 70
           D G Y C A+N
Sbjct: 49 LDEGSYTCFAEN 60

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.86
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.86
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.85
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.84
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.84
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.83
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.83
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.83
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.83
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.82
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.82
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.82
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.82
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.82
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.81
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.81
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.81
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.81
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.81
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.81
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.8
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.8
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.8
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.8
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.79
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.79
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.78
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.78
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.78
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.78
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.78
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.78
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.78
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.78
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.77
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.77
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.77
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.77
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.77
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.77
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.76
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.76
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.75
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.75
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.74
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.74
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.74
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.74
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.73
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.73
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.73
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.73
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.72
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.72
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.72
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.72
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.72
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.71
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.71
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.69
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.69
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.69
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.69
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.69
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.69
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.68
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.67
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.67
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.67
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.66
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.65
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.65
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.64
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.64
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.64
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.63
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.62
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.61
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.59
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.59
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.59
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.57
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.51
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.51
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.5
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.5
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.48
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.46
KOG3513|consensus	1051		99.45
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.45
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.43
KOG3513|consensus	1051		99.41
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.41
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	99.4
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.4
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.4
smart00409	86	IG Immunoglobulin.	99.4
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.4
PHA02826	227	IL-1 receptor-like protein; Provisional	99.38
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.37
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.35
PHA02785	326	IL-beta-binding protein; Provisional	99.32
KOG4194|consensus	873		99.31
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.28
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.28
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.28
KOG4221|consensus	1381		99.26
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.25
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.25
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.24
PHA02785	326	IL-beta-binding protein; Provisional	99.22
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	99.2
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	99.18
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	99.15
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	99.14
PHA02826	227	IL-1 receptor-like protein; Provisional	99.12
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	99.11
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	99.09
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	99.08
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	99.07
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	99.07
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.06
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.05
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	99.05
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	99.04
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	99.04
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	99.02
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	99.01
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.98
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.98
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.97
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.94
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.94
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.93
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.91
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.9
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.85
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.85
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.83
smart00407	75	IGc1 Immunoglobulin C-Type.	98.8
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.8
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.78
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.77
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.77
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.75
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.72
KOG4222|consensus	1281		98.72
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.69
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.69
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.68
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	98.66
KOG4221|consensus	1381		98.65
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.65
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.62
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.62
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.62
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.6
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.6
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.6
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.59
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	98.58
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.57
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	98.57
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.54
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.54
KOG4194|consensus	873		98.54
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.52
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.51
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.48
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.48
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.45
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.45
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.45
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	98.4
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	98.34
PHA03376	221	BARF1; Provisional	98.31
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.29
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	98.28
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	98.25
KOG4222|consensus	1281		98.24
smart00406	81	IGv Immunoglobulin V-Type.	98.21
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	98.17
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.14
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.07
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	98.06
PHA02633	63	hypothetical protein; Provisional	97.9
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.57
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.57
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.41
KOG4597|consensus	560		97.3
PHA03042	286	CD47-like protein; Provisional	97.28
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	96.95
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.85
KOG3515|consensus	741		96.85
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.66
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.59
KOG1480|consensus	909		95.59
PHA02865	338	MHC-like TNF binding protein; Provisional	94.99
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	94.89
KOG3515|consensus	741		94.75
PHA02982	251	hypothetical protein; Provisional	94.73
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	94.45
PHA03052	69	Hypothetical protein; Provisional	93.55
PHA02914	500	Immunoglobulin-like domain protein; Provisional	92.51
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	92.25
PHA03271	490	envelope glycoprotein C; Provisional	91.86
PHA03269	566	envelope glycoprotein C; Provisional	91.66
PHA03270	466	envelope glycoprotein C; Provisional	89.65
PHA03273	486	envelope glycoprotein C; Provisional	88.53
PHA03112	141	IL-18 binding protein; Provisional	83.7
COG5475	60	Uncharacterized small protein [Function unknown]	83.56

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.86  E-value=3.6e-20  Score=80.40  Aligned_cols=76  Identities=20%  Similarity=0.425  Sum_probs=59.7

Q ss_pred             EEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEeC
Q psy11826          8 FFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTDY   83 (83)
Q Consensus         8 ~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~~   83 (83)
                      +.|.+.|.|.|.++|+++|..+...................+.|.|..+...|+|.|.|.|.|..|.....+.+.|
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~f   78 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAHF   78 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEeec
Confidence            5688899999999999999998765433221111222234568999999999999999999999999999988876

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.86  E-value=2.3e-20  Score=80.47  Aligned_cols=74  Identities=30%  Similarity=0.565  Sum_probs=61.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      +|+.+.|.|.+.|.|.|.+.|++++..+..........        ..+|.|.+++.+|.|.|.|.+.|..|.......|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~--------~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L   72 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLS--------SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQL   72 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEcc--------CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence            58999999999999999999999998776543322211        2479999999999999999999999999888877


Q ss_pred             eC
Q psy11826         82 DY   83 (83)
Q Consensus        82 ~~   83 (83)
                      .+
T Consensus        73 ~V   74 (74)
T cd05745          73 TV   74 (74)
T ss_pred             eC
Confidence            53

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.85  E-value=5.8e-20  Score=78.96  Aligned_cols=72  Identities=22%  Similarity=0.413  Sum_probs=59.7

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      |+.+.|.|.+.|.|.|.+.|++++..+....+..+..        ..+|.|.+++.+|.|.|.|.+.|..|.......|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~--------~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   72 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWD--------DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLS   72 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcC--------CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence            6789999999999999999999988765444333211        23699999999999999999999999998887775

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.84  E-value=2e-19  Score=81.49  Aligned_cols=81  Identities=26%  Similarity=0.302  Sum_probs=62.4

Q ss_pred             CCceEEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      +|+.+.|.|.+.+ .|.|.+.|+++|..+.......+...........+.|.|..++.+|+|.|.|.+.|..|.....+.
T Consensus        17 ~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t~~   96 (101)
T cd04975          17 LGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLTFE   96 (101)
T ss_pred             CCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEEEE
Confidence            5889999999999 889999999999988754322221110012234578999999999999999999999999887776


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus        97 L~   98 (101)
T cd04975          97 LY   98 (101)
T ss_pred             EE
Confidence            64

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.84  E-value=7e-19  Score=78.05  Aligned_cols=79  Identities=24%  Similarity=0.423  Sum_probs=61.4

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      |+.+.|.|.+.|.|+|.+.|.+++..+... .++.+... .......+.|.|.++..+|.|.|.|.+.|..|.....+.|
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~-~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTK-EVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL   79 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEe-cCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence            788999999999999999999999877543 22222221 1223445789999999999999999999999998877665


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        80 ~   80 (88)
T cd05735          80 T   80 (88)
T ss_pred             E
Confidence            4

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.83  E-value=1.3e-18  Score=76.86  Aligned_cols=77  Identities=25%  Similarity=0.378  Sum_probs=62.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+... .+..+..     ....+.|.|..+..+|+|.|.|.+.|..|.....+.
T Consensus         9 ~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~-----~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894           9 AGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVES-----YKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             cCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEE-----cCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            6899999999999999999999999888643 2232211     111467999999999999999999999999988887


Q ss_pred             EeC
Q psy11826         81 TDY   83 (83)
Q Consensus        81 ~~~   83 (83)
                      |.+
T Consensus        84 l~V   86 (86)
T cd05894          84 VKV   86 (86)
T ss_pred             EEC
Confidence            753

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.83  E-value=7.8e-19  Score=75.76  Aligned_cols=74  Identities=22%  Similarity=0.444  Sum_probs=58.1

Q ss_pred             EEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEeC
Q psy11826          6 ITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTDY   83 (83)
Q Consensus         6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~~   83 (83)
                      +.|.|.+.|.|.|.+.|++++..+... .++.+..    ......+|.|.++..+|+|.|.|.+.|..|.......|.+
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~----~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQ----DNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEE----cCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            468999999999999999999888643 3333221    1112247999999999999999999999999988887753

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.83  E-value=9.1e-19  Score=78.27  Aligned_cols=77  Identities=21%  Similarity=0.428  Sum_probs=62.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+....+..+...  ..  ....|.|.+++.+|+|.|.|.+.|..|.....+.|
T Consensus        15 ~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v   90 (92)
T cd05737          15 EGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVE--QG--KYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTV   90 (92)
T ss_pred             CCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEc--CC--CEEEEEEccCChhhCEEEEEEEEECCCcceEEEEE
Confidence            689999999999999999999999988865544333211  11  13579999999999999999999999999888877


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        91 ~   91 (92)
T cd05737          91 S   91 (92)
T ss_pred             e
Confidence            5

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.83  E-value=1.1e-18  Score=76.32  Aligned_cols=76  Identities=20%  Similarity=0.414  Sum_probs=58.7

Q ss_pred             EEeEeCccCCCeEEEEeCCEEecccceEEEEEEec--CCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEeC
Q psy11826          8 FFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFL--GNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTDY   83 (83)
Q Consensus         8 ~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~~   83 (83)
                      +.|.+.|.|.|.+.|+++|..+.............  ......+.|.|..++..|.|.|.|.+.|..|.....+.+.|
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~   80 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF   80 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence            57889999999999999999887654322111100  11233457999999999999999999999999999998876

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.82  E-value=8.8e-19  Score=79.08  Aligned_cols=76  Identities=18%  Similarity=0.323  Sum_probs=62.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+....+..+..     ....+.|.|..+..+|.|.|.|.+.|..|...+.+.|
T Consensus        14 ~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~-----~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l   88 (98)
T cd05762          14 AGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIEN-----TENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNL   88 (98)
T ss_pred             CCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEe-----cCCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEE
Confidence            68999999999999999999999999887554443322     1124679999999999999999999999998887766


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        89 ~   89 (98)
T cd05762          89 T   89 (98)
T ss_pred             E
Confidence            4

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.82  E-value=4.9e-19  Score=80.23  Aligned_cols=81  Identities=25%  Similarity=0.341  Sum_probs=62.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEE-ecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEW-FLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      +|..+.|.|.+.|.|+|.+.|++++..+........... ........+.|.|.+++.+|+|.|.|.+.|..|.....+.
T Consensus        17 ~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~   96 (101)
T cd05859          17 LHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFA   96 (101)
T ss_pred             cCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEE
Confidence            467889999999999999999999998875443211110 0112234568999999999999999999999999887776


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus        97 l~   98 (101)
T cd05859          97 LQ   98 (101)
T ss_pred             EE
Confidence            64

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.82  E-value=3.2e-18  Score=73.91  Aligned_cols=74  Identities=26%  Similarity=0.443  Sum_probs=57.7

Q ss_pred             EEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEeC
Q psy11826          6 ITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTDY   83 (83)
Q Consensus         6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~~   83 (83)
                      +.|.|.+.|.|.|.+.|++++..+... .+..+..    ......+|.|..++.+|+|.|.|.+.|..|.......|.+
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQ----DNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEE----cCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            468999999999999999999887643 2222211    1112346999999999999999999999999988887753

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.82  E-value=2.3e-18  Score=74.34  Aligned_cols=74  Identities=31%  Similarity=0.491  Sum_probs=57.6

Q ss_pred             EEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEeC
Q psy11826          6 ITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTDY   83 (83)
Q Consensus         6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~~   83 (83)
                      +.|.|.+.|.|.|.+.|++++..+... .+.....    .......|.|..++.+|+|.|.|.+.|..|.......|.+
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQ----DNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEE----cCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            468999999999999999999887643 2222211    1112346999999999999999999999999988877753

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.82  E-value=1.5e-18  Score=74.30  Aligned_cols=71  Identities=21%  Similarity=0.515  Sum_probs=56.7

Q ss_pred             eEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEeC
Q psy11826          5 KITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTDY   83 (83)
Q Consensus         5 ~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~~   83 (83)
                      .+.|.|.+.|.|.|.+.|++++..+.......+..        ...|.+..++.+|.|.|.|.+.|..|.......|.+
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~--------~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVK--------EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEe--------cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            37899999999999999999998776544333221        124777799999999999999999999988887753

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.81  E-value=2.4e-18  Score=74.50  Aligned_cols=74  Identities=19%  Similarity=0.338  Sum_probs=58.8

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      |+.+.|.|.+.|.|.|.+.|++++..+..........  ..    ...|.|.+++.+|+|.|.|.+.|..|.......|.
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~--~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   74 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRH--VS----SGALILTDVQPSDTAVYQCEARNRHGNLLANAHVH   74 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEE--ee----CCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEE
Confidence            6889999999999999999999998776432110111  01    24699999999999999999999999988877765

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.81  E-value=1.1e-18  Score=75.07  Aligned_cols=72  Identities=26%  Similarity=0.446  Sum_probs=59.7

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      |+.+.|.|.+.|.|.|.+.|++++..+..........        ...|.|.+++.+|+|.|.|.+.|..|.......|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~--------~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   72 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWP--------DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS   72 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECC--------CCeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence            6889999999999999999999998776544333211        13699999999999999999999999998887775

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.81  E-value=5.4e-18  Score=73.02  Aligned_cols=74  Identities=22%  Similarity=0.377  Sum_probs=59.7

Q ss_pred             eEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEeC
Q psy11826          5 KITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTDY   83 (83)
Q Consensus         5 ~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~~   83 (83)
                      .+.|.|.+.|.|.|.+.|++++..+....+..+..     ....+.|.|.++..+|+|.|.|.+.|..|.....+.|.+
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~-----~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIET-----TASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEE-----CCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            36899999999999999999998885544333221     112467999999999999999999999999988887753

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.81  E-value=2.1e-18  Score=77.76  Aligned_cols=82  Identities=24%  Similarity=0.375  Sum_probs=60.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+...................+.|.|.+++.+|.|.|.|.+.|..|.....+.|
T Consensus        16 ~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   95 (97)
T cd05869          16 LEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYL   95 (97)
T ss_pred             cCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCeeEEEEE
Confidence            36889999999999999999999876654321100000001112224679999999999999999999999999888887


Q ss_pred             eC
Q psy11826         82 DY   83 (83)
Q Consensus        82 ~~   83 (83)
                      .+
T Consensus        96 ~v   97 (97)
T cd05869          96 EV   97 (97)
T ss_pred             EC
Confidence            53

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.81  E-value=6e-19  Score=74.51  Aligned_cols=63  Identities=21%  Similarity=0.304  Sum_probs=51.9

Q ss_pred             EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      +.|.|.+.|.|.|.+.|+++|..+....             ..+.|.|.++..+|+|.|.|.+.|..|.....+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~-------------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~   63 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKH-------------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISL   63 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccC-------------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEE
Confidence            3689999999999999999998886321             13479999999999999999999999966555443

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.81  E-value=1e-18  Score=77.56  Aligned_cols=72  Identities=28%  Similarity=0.408  Sum_probs=58.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+........     .    ...|.|.+++.+|.|.|.|.+.|..|...+...|
T Consensus        15 ~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~-----~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   85 (88)
T cd05851          15 KGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM-----S----GAVLKIFNIQPEDEGTYECEAENIKGKDKHQARV   85 (88)
T ss_pred             CCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec-----C----CCEEEECcCChhhCEEEEEEEEcCCCceEEEEEE
Confidence            689999999999999999999999876654322111     1    2369999999999999999999999998777665


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        86 ~   86 (88)
T cd05851          86 Y   86 (88)
T ss_pred             E
Confidence            3

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.80  E-value=1.2e-17  Score=73.59  Aligned_cols=78  Identities=21%  Similarity=0.392  Sum_probs=61.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+.............    ....|.|..+..+|.|.|.|.+.|..|.....+.|
T Consensus         8 ~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~----~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           8 AANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRN----QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             CCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeC----CceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            58899999999999999999999998876543221111100    13468899999999999999999999999988887


Q ss_pred             eC
Q psy11826         82 DY   83 (83)
Q Consensus        82 ~~   83 (83)
                      .+
T Consensus        84 ~v   85 (85)
T cd05857          84 DV   85 (85)
T ss_pred             EC
Confidence            53

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.80  E-value=3.9e-18  Score=73.82  Aligned_cols=74  Identities=18%  Similarity=0.409  Sum_probs=58.0

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      |+.+.|.|.+.|.|.|.+.|++++..+..........  ..    ...|.+..++..|.|.|.|.+.|..|.......|.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~--~~----~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRK--VD----GDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVN   74 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEE--ec----CCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence            6789999999999999999999998875322111111  01    13688899999999999999999999988887765

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.80  E-value=9.4e-18  Score=74.98  Aligned_cols=75  Identities=25%  Similarity=0.455  Sum_probs=61.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.......+..     ....+.|.|.+++.+|.|.|.|.+.|..|.....+.|
T Consensus        17 ~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~-----~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   91 (92)
T cd05747          17 EGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITS-----TEYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTL   91 (92)
T ss_pred             CCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEE-----cCCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEe
Confidence            68999999999999999999999998776544433321     1113589999999999999999999999998888765

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.80  E-value=6.8e-18  Score=75.91  Aligned_cols=81  Identities=25%  Similarity=0.368  Sum_probs=59.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+...................+.|.|.+++.+|.|.|.|.+.|..|.....+.|
T Consensus        15 ~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l   94 (96)
T cd05732          15 ELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYL   94 (96)
T ss_pred             cCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEE
Confidence            58899999999999999999999885544321100000111122234689999999999999999999999998888776


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        95 ~   95 (96)
T cd05732          95 E   95 (96)
T ss_pred             e
Confidence            5

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.79  E-value=1.6e-18  Score=73.78  Aligned_cols=68  Identities=31%  Similarity=0.562  Sum_probs=55.4

Q ss_pred             EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      +.|.|.+.|.|.|.+.|++++..+.......+..        ...|.|..+..+|.|.|.|.+.|..|.......|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~--------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP--------EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECC--------CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            4689999999999999999998776544333211        2479999999999999999999999998877665

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.79  E-value=1.5e-17  Score=74.03  Aligned_cols=76  Identities=18%  Similarity=0.327  Sum_probs=60.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+.........     .......|.|.+++.+|.|.|.|.+.|..|.......|
T Consensus        14 ~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L   88 (90)
T cd04972          14 EGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLE-----TTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQV   88 (90)
T ss_pred             CCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEE-----ecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEE
Confidence            6899999999999999999999999876543221110     11124579999999999999999999999998887776


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        89 ~   89 (90)
T cd04972          89 T   89 (90)
T ss_pred             e
Confidence            5

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.78  E-value=8.3e-18  Score=75.53  Aligned_cols=74  Identities=30%  Similarity=0.553  Sum_probs=59.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+... ......   ..    .+.|.|.+++.+|.|.|.|.+.|..|.....+.
T Consensus        17 ~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~---~~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   89 (95)
T cd05730          17 LGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN---ED----GSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH   89 (95)
T ss_pred             CCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe---CC----CCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence            5889999999999999999999999877654 222111   01    246999999999999999999999999888777


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus        90 L~   91 (95)
T cd05730          90 LK   91 (95)
T ss_pred             EE
Confidence            64

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.78  E-value=1e-17  Score=72.84  Aligned_cols=72  Identities=22%  Similarity=0.334  Sum_probs=56.9

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      |+.+.|.|.+.|.|.|.+.|++++..+....+..+..     ......|.|.+++.+|.|.|.|.+.|..|......
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   72 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITS-----EGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIP   72 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEE-----CCCEEEEEECCCChHHCEEEEEEEEecCCEEEecc
Confidence            6889999999999999999999987776544333221     11245799999999999999999999999765543

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.78  E-value=1.8e-17  Score=71.69  Aligned_cols=74  Identities=20%  Similarity=0.306  Sum_probs=58.7

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      |+.+.|.|.+.|.|.|.+.|++++..+........ . ...    ...|.|..++.+|.|.|.|.+.|..|.......|.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~-~-~~~----~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPR-R-RVD----GGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH   74 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcce-E-Ecc----CCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence            78899999999999999999999987765432110 0 011    24799999999999999999999999988877664

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.78  E-value=1.5e-17  Score=73.35  Aligned_cols=72  Identities=26%  Similarity=0.515  Sum_probs=60.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+.........         ...|.|..+..+|.|.|.|.+.|..|.......|
T Consensus        13 ~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~---------~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05728          13 IGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE---------AGDLRITKLSLSDSGMYQCVAENKHGTIYASAEL   83 (85)
T ss_pred             CCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe---------CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEE
Confidence            5889999999999999999999999887654433221         2368999999999999999999999998887776


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        84 ~   84 (85)
T cd05728          84 A   84 (85)
T ss_pred             E
Confidence            4

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.78  E-value=4.5e-17  Score=74.80  Aligned_cols=80  Identities=19%  Similarity=0.341  Sum_probs=59.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCC-CCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPAT-QKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+... .+...... .......+.|.|.++. .+|.|.|.|.+.|..|.....+
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~-~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i  100 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTE-HTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDI  100 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEee-ccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEE
Confidence            3578999999999999999999999887643 22222211 1122224679999987 5899999999999999987777


Q ss_pred             EEe
Q psy11826         80 RTD   82 (83)
Q Consensus        80 ~~~   82 (83)
                      .|.
T Consensus       101 ~L~  103 (109)
T cd05773         101 QLV  103 (109)
T ss_pred             EEE
Confidence            664

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.78  E-value=4e-18  Score=72.94  Aligned_cols=69  Identities=25%  Similarity=0.519  Sum_probs=54.4

Q ss_pred             EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826          6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus         6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      +.|.|.+.|.|.|.+.|++++..+..... ...   .    ....|.|..++.+|.|.|.|.+.|..|.....+.|.
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~~---~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   69 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KKL---N----NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVT   69 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCce-eEE---c----CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEE
Confidence            46899999999999999998876543221 110   0    134799999999999999999999999988877764

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.78  E-value=1.2e-17  Score=73.04  Aligned_cols=75  Identities=28%  Similarity=0.494  Sum_probs=60.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+........       ......|.|.+++.+|.|.|.|.+.|..|.....+.|
T Consensus         8 ~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v   80 (82)
T cd05856           8 VGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGES-------RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV   80 (82)
T ss_pred             CCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcccee-------cCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence            589999999999999999999999876653321110       1113579999999999999999999999999888887


Q ss_pred             eC
Q psy11826         82 DY   83 (83)
Q Consensus        82 ~~   83 (83)
                      ++
T Consensus        81 ~v   82 (82)
T cd05856          81 DV   82 (82)
T ss_pred             eC
Confidence            63

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.78  E-value=2.2e-17  Score=70.27  Aligned_cols=68  Identities=26%  Similarity=0.512  Sum_probs=53.4

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      |+.+.|.|.+.|.|.|.+.|++++..+........     .    ...|.|.++.  |.|.|.|.+.|..|.......|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~-----~----~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV-----G----RNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec-----C----ccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            67899999999999999999999987754332211     1    2357777764  7899999999999998877765

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.77  E-value=6.4e-18  Score=72.29  Aligned_cols=68  Identities=21%  Similarity=0.334  Sum_probs=54.3

Q ss_pred             EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826          6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus         6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      +.|.|.+.|.|.|.+.|++++..+........     .    ...|.|.++..+|+|.|.|.+.|..|.....+.++
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~-----~----~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~   68 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK-----S----GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFT   68 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc-----C----CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEE
Confidence            36899999999999999999988865532211     1    24799999999999999999999999876665543

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.77  E-value=1.7e-17  Score=74.95  Aligned_cols=76  Identities=25%  Similarity=0.413  Sum_probs=57.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CEEeccc-----ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DIELTFH-----KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.|.|.|.+.|++.  +..+...     .++..     ........|.|.+++.+|+|.|.|.+.|..|.
T Consensus        15 ~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v-----~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   89 (98)
T cd05870          15 ENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEV-----KGQHGESSLHIKDVKLSDSGRYDCEAASRIGG   89 (98)
T ss_pred             CCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEE-----eecCCeeEEEEeeCCcCCCEEEEEEEeccCCc
Confidence            689999999999999999999984  3333211     11111     11112357999999999999999999999999


Q ss_pred             eeeEEEEe
Q psy11826         75 DRRGFRTD   82 (83)
Q Consensus        75 ~~~~~~~~   82 (83)
                      ......|.
T Consensus        90 ~~~~~~l~   97 (98)
T cd05870          90 HQKSMYLD   97 (98)
T ss_pred             ceeEEEEe
Confidence            88777765

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.77  E-value=4.2e-17  Score=73.35  Aligned_cols=77  Identities=26%  Similarity=0.433  Sum_probs=58.0

Q ss_pred             CCceEEEEeEeCccCC-CeEEEEe-CCEEecc-cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC-cceee
Q psy11826          2 LGRKITFFCMAEGFPR-PHITWTK-DDIELTF-HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF-AIDRR   77 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~-~~~~w~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-g~~~~   77 (83)
                      .|+.+.|.|.+.|.|. |.+.|++ ++..+.. ..+....    ......++|.|..++.+|.|.|.|.+.|.. |....
T Consensus        14 ~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~----~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~   89 (96)
T cd05865          14 VGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVV----RNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEA   89 (96)
T ss_pred             CCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEE----eCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEE
Confidence            5899999999999985 7999998 6665543 2222221    111224689999999999999999999996 77887


Q ss_pred             EEEEe
Q psy11826         78 GFRTD   82 (83)
Q Consensus        78 ~~~~~   82 (83)
                      .+.|+
T Consensus        90 s~~l~   94 (96)
T cd05865          90 TVNVK   94 (96)
T ss_pred             EEEEE
Confidence            77765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.77  E-value=4.4e-17  Score=72.81  Aligned_cols=78  Identities=21%  Similarity=0.435  Sum_probs=61.9

Q ss_pred             CCCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .+|+.+.|.|.+.+.|.|.+.|++++..+.....+....  ... . .+.|.|..++.+|+|.|.|.+.|..|.....+.
T Consensus        14 ~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~--~~~-~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   89 (92)
T cd05891          14 MEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKL--EQG-K-YASLTIKGVTSEDSGKYSINVKNKYGGETVDVT   89 (92)
T ss_pred             cCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEE--cCC-C-EEEEEECCCChhhCEEEEEEEEeCCCceeeEEE
Confidence            368999999999999999999999998776544333211  111 1 246999999999999999999999999988887


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus        90 v~   91 (92)
T cd05891          90 VS   91 (92)
T ss_pred             EE
Confidence            65

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.77  E-value=5.1e-18  Score=72.33  Aligned_cols=63  Identities=25%  Similarity=0.497  Sum_probs=50.8

Q ss_pred             EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeE
Q psy11826          6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG   78 (83)
Q Consensus         6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~   78 (83)
                      +.+.|.+.|.|.|.+.|++++..+.......          ....|.|..+..+|.|.|.|.+.|..|.....
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~----------~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~   63 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFK----------RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQR   63 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEc----------cCCEEEECcCCHHHCEEEEEEEEECCCceeeE
Confidence            3688999999999999999999886542211          02369999999999999999999999965443

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.77  E-value=4.7e-17  Score=70.06  Aligned_cols=72  Identities=26%  Similarity=0.447  Sum_probs=56.4

Q ss_pred             CceEEEEeEeCccCCCeEEEEe-CCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          3 GRKITFFCMAEGFPRPHITWTK-DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+..........        ..+|.|..+..+|.|.|.|.+.|..|.......|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~--------~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   72 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD--------NGTLDILITTVKDTGSFTCIASNAAGEATATVEL   72 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEec--------CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence            6889999999999999999997 555554333222111        2368889999999999999999999998888776


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        73 ~   73 (74)
T cd05764          73 H   73 (74)
T ss_pred             E
Confidence            5

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.76  E-value=4.6e-17  Score=72.36  Aligned_cols=76  Identities=32%  Similarity=0.511  Sum_probs=64.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+...........  .   ..+.|.|.++..+|.|.|.|.+.|..|.....+.|
T Consensus        14 ~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~--~---~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l   88 (90)
T PF07679_consen   14 EGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESD--G---GSSSLTIKNVTREDAGTYTCVASNSSGEATASVNL   88 (90)
T ss_dssp             TTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEE--T---TEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecc--c---ceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEE
Confidence            689999999999999999999999998887655544322  1   35689999999999999999999999998888776


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        89 ~   89 (90)
T PF07679_consen   89 T   89 (90)
T ss_dssp             E
T ss_pred             E
Confidence            5

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.76  E-value=4.7e-17  Score=72.18  Aligned_cols=71  Identities=30%  Similarity=0.437  Sum_probs=57.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+.......         .....|.|.+++.+|+|.|.|.+.|..|.......|
T Consensus        15 ~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~---------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   85 (88)
T cd04968          15 KGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS---------MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRI   85 (88)
T ss_pred             CCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE---------EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEE
Confidence            58899999999999999999999876554332211         113479999999999999999999999987776655

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.75  E-value=4.4e-17  Score=72.56  Aligned_cols=72  Identities=29%  Similarity=0.509  Sum_probs=55.0

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCCEEecc--------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDDIELTF--------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      |+.+.|.|.+.+.|.|.+.|++++..+..        ..++..     ..   ...|.|.+++.+|+|.|.|.+.|..|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v-----~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~   72 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV-----SQ---TGDLTITNVQRSDVGYYICQTLNVAGS   72 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE-----CC---CCeEEEeeCChhhCEEEEEEEEcCCCc
Confidence            68899999999999999999998754311        111111     10   236999999999999999999999998


Q ss_pred             eeeEEEEe
Q psy11826         75 DRRGFRTD   82 (83)
Q Consensus        75 ~~~~~~~~   82 (83)
                      ....+.|.
T Consensus        73 ~~~~~~l~   80 (90)
T cd05726          73 ILTKAYLE   80 (90)
T ss_pred             eEEEEEEE
Confidence            87766654

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.75  E-value=3.3e-16  Score=70.71  Aligned_cols=80  Identities=25%  Similarity=0.339  Sum_probs=61.6

Q ss_pred             CCceEEEEeEeCccCCC-eEEEEeCCEEeccc--ceEEEEEEecCCCeEEEEEEEccCCCCC-CeEEEEEeeCCCcceee
Q psy11826          2 LGRKITFFCMAEGFPRP-HITWTKDDIELTFH--KYFQVHEWFLGNNTIKSKMEIDPATQKD-AGYYECVADNPFAIDRR   77 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~g~~~~   77 (83)
                      .|+.+.|.|.+.|.|.| .+.|.+++..+...  .++.+.... ......+.|.|..++.+| .|.|.|.+.|..|....
T Consensus        15 ~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~-~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~~~   93 (98)
T cd05758          15 LGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDP-SPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSGTA   93 (98)
T ss_pred             CCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEec-CCCceEEEEEECCccccccceeEEEEEEcCCCcccE
Confidence            58999999999999999 59999999877643  233333221 123345689999999866 89999999999999888


Q ss_pred             EEEEe
Q psy11826         78 GFRTD   82 (83)
Q Consensus        78 ~~~~~   82 (83)
                      .+.|+
T Consensus        94 ~~~L~   98 (98)
T cd05758          94 IISLE   98 (98)
T ss_pred             EEEeC
Confidence            87763

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.74  E-value=1.2e-16  Score=71.10  Aligned_cols=80  Identities=24%  Similarity=0.378  Sum_probs=55.3

Q ss_pred             CceEEEEeEeCccCCCeEEEEeC----CEEecccc--eEEEEEEec--CCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKD----DIELTFHK--YFQVHEWFL--GNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~----~~~~~~~~--~~~~~~~~~--~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      |+.+.|.|.+.+.|.|.+.|++.    +..+....  .........  ......+.|.|.+++.+|+|.|.|.+.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            68899999999999999999984    33332211  111100000  00111357999999999999999999999998


Q ss_pred             eeeEEEEe
Q psy11826         75 DRRGFRTD   82 (83)
Q Consensus        75 ~~~~~~~~   82 (83)
                      ......|.
T Consensus        81 ~~~~a~L~   88 (90)
T cd05858          81 SHHSAWLT   88 (90)
T ss_pred             ccceEEEE
Confidence            87766654

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.74  E-value=1.8e-16  Score=71.09  Aligned_cols=74  Identities=23%  Similarity=0.435  Sum_probs=54.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCC-CCCCeEEEEEeeCCCccee-eEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPAT-QKDAGYYECVADNPFAIDR-RGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~g~~~-~~~   79 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+..........  .     ...|.|..+. .+|.|.|.|.+.|..|... ...
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~--~-----~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~   90 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSL--I-----DGNLIISNPSEVKDSGRYQCLATNSIGSILSREA   90 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEe--e-----CCeEEEccCCccCcCEEEEEEEEcCCCeEEeccE
Confidence            36789999999999999999999998876432211111  0     1357787774 6899999999999999874 355


Q ss_pred             EEe
Q psy11826         80 RTD   82 (83)
Q Consensus        80 ~~~   82 (83)
                      .|+
T Consensus        91 ~l~   93 (94)
T cd05848          91 LLQ   93 (94)
T ss_pred             EEe
Confidence            554

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.74  E-value=3.6e-17  Score=69.85  Aligned_cols=69  Identities=29%  Similarity=0.607  Sum_probs=53.9

Q ss_pred             EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826          6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus         6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      +.|.|.+.|.|.|.+.|++++..+..... ...       .....|.|.+++.+|.|.|.|.+.|..|.....+.|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~-~~~-------~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   69 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRT-KFE-------NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVT   69 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCce-eEe-------cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEE
Confidence            46899999999999999998876643211 110       1124799999999999999999999999988777664

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.74  E-value=1.1e-16  Score=68.15  Aligned_cols=68  Identities=26%  Similarity=0.468  Sum_probs=54.1

Q ss_pred             EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826          6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus         6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      +.|.|.+.|.|.|.+.|++++..++... .....        ...|.|.+++.+|+|.|.|.+.|..|.......|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~~~~--------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   68 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGR-AEILD--------DKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT   68 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCc-EEEee--------CCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence            4689999999999999999876654322 22111        23699999999999999999999999988877765

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.73  E-value=1.2e-16  Score=68.97  Aligned_cols=72  Identities=24%  Similarity=0.329  Sum_probs=52.1

Q ss_pred             EEEEeEeCccCCCeEEEEeCCEEe-cccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826          6 ITFFCMAEGFPRPHITWTKDDIEL-TFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus         6 ~~~~C~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      +.|.|.+.|.|.|.+.|++++... +.....+.... ..    ...|.|.+++.+|+|.|.|.+.|..|.......|.
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~-~~----~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~   73 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVM-PE----DDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLT   73 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEe-cC----CCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEE
Confidence            368999999999999999987542 22111111110 01    23689999999999999999999999887776654

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.73  E-value=1.4e-16  Score=68.67  Aligned_cols=73  Identities=26%  Similarity=0.443  Sum_probs=54.6

Q ss_pred             EEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          6 ITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         6 ~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      +.|.|.+.+ .|.|.+.|++++..+..........  .......+.|.|..++.+|.|.|.|.+.|..|.......
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~--~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIK--IRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEE--EEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            368999999 8999999999998776543221100  011122467999999999999999999999998776654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.73  E-value=3.6e-16  Score=68.95  Aligned_cols=75  Identities=23%  Similarity=0.347  Sum_probs=56.4

Q ss_pred             ceEEEEeEeCccCCC--eEEEEeCCEEecccc---eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeE
Q psy11826          4 RKITFFCMAEGFPRP--HITWTKDDIELTFHK---YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG   78 (83)
Q Consensus         4 ~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~   78 (83)
                      +++.|.|.+.|.|.|  .+.|++++..+....   ......  ..  ...+.|.|.+++..|.|.|.|.+.|..|...+.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~--~~--~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~   76 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRME--VK--ETIGDLVIVNAQLSHAGTYTCTAQTVVDSASAS   76 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEE--ec--ceEeEEEEccCChhhCeEEEEEEecCCCCEEEE
Confidence            468999999999987  579999998775422   111111  00  123579999999999999999999999998887


Q ss_pred             EEEe
Q psy11826         79 FRTD   82 (83)
Q Consensus        79 ~~~~   82 (83)
                      ..|.
T Consensus        77 ~~L~   80 (85)
T cd05854          77 ATLV   80 (85)
T ss_pred             EEEE
Confidence            7664

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.73  E-value=1.4e-16  Score=69.11  Aligned_cols=69  Identities=28%  Similarity=0.567  Sum_probs=52.2

Q ss_pred             EEEEeEeCccCCCeEEEEeCCEEecccce-EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee--eEEEE
Q psy11826          6 ITFFCMAEGFPRPHITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR--RGFRT   81 (83)
Q Consensus         6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~--~~~~~   81 (83)
                      ++|.|.+.|.|.|.+.|+++|..+..... .....   .    ..+|.|..+..+|.|.|.|.+.|..|...  ..+.|
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~---~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l   72 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS---K----ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL   72 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC---C----CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence            47899999999999999999988754321 11110   1    23799999999999999999999999753  34444

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.72  E-value=3.8e-16  Score=69.56  Aligned_cols=80  Identities=23%  Similarity=0.345  Sum_probs=54.8

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCC----EEeccc--ceEEEEEEecCC--CeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDD----IELTFH--KYFQVHEWFLGN--NTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~----~~~~~~--~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      |+.+.|.|.+.|.|.|.+.|++++    ..+...  ............  ......|.|.+++.+|+|.|.|.+.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            678999999999999999999853    222111  111111110000  111236899999999999999999999998


Q ss_pred             eeeEEEEe
Q psy11826         75 DRRGFRTD   82 (83)
Q Consensus        75 ~~~~~~~~   82 (83)
                      ......|.
T Consensus        81 ~~~sa~L~   88 (90)
T cd04974          81 SHHSAWLT   88 (90)
T ss_pred             ccCCEEEE
Confidence            87766654

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.72  E-value=6.9e-16  Score=69.21  Aligned_cols=73  Identities=22%  Similarity=0.353  Sum_probs=54.0

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCC-CCCCeEEEEEeeCCCcceee-EEE
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPAT-QKDAGYYECVADNPFAIDRR-GFR   80 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~g~~~~-~~~   80 (83)
                      |+.+.|.|.+.|.|.|.+.|++++..+..........  .     ...|.|..+. ..|.|.|.|.+.|..|.... ...
T Consensus        19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~--~-----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~   91 (94)
T cd05850          19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL--V-----AGNLVINNPQKARDAGSYQCLAINRCGTVVSREAN   91 (94)
T ss_pred             CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE--E-----CCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEE
Confidence            5689999999999999999999998876432111111  0     1357777654 58999999999999998754 555


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus        92 l~   93 (94)
T cd05850          92 LR   93 (94)
T ss_pred             Ee
Confidence            54

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.72  E-value=4.1e-16  Score=68.64  Aligned_cols=79  Identities=19%  Similarity=0.263  Sum_probs=56.6

Q ss_pred             CceEEEEeEeCcc--CCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          3 GRKITFFCMAEGF--PRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         3 g~~~~~~C~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      |+.+.|.|.+.+.  |.|.+.|..++..+...................+.|.|.+++.+|+|.|.|.+.|..+.......
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            7889999999998  88899999877654322111100111112234568999999999999999999999988766655


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus        81 v   81 (84)
T cd05742          81 V   81 (84)
T ss_pred             E
Confidence            4

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.72  E-value=4.2e-16  Score=67.89  Aligned_cols=71  Identities=25%  Similarity=0.485  Sum_probs=57.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+. .+.+.|+++|..+....+..+.         ...|.|..++.+|+|.|.|.+.|..|.....+.|
T Consensus         8 ~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~---------~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v   77 (79)
T cd04973           8 PGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT---------GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV   77 (79)
T ss_pred             CCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe---------CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence            68999999998886 5689999999887654433321         1369999999999999999999999988777766


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        78 ~   78 (79)
T cd04973          78 N   78 (79)
T ss_pred             e
Confidence            4

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.72  E-value=4.9e-16  Score=67.21  Aligned_cols=71  Identities=30%  Similarity=0.493  Sum_probs=54.2

Q ss_pred             EEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826          7 TFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus         7 ~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      .|.|.+.|.|.|.+.|++++..+...........  ..   ...|.|..++.+|.|.|.|.+.|..|.....+.|.
T Consensus         2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~--~~---~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   72 (76)
T cd05736           2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLI--AN---GSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLF   72 (76)
T ss_pred             EeEeEeeecCCCEEEEEECCEECCCCCCccEEEe--CC---CCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEE
Confidence            6889999999999999999987764322111111  11   23699999999999999999999999887766653

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.71  E-value=4.3e-16  Score=68.04  Aligned_cols=77  Identities=30%  Similarity=0.469  Sum_probs=55.0

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCCE---EecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDDI---ELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      |+.+.|.|.+.|.|.|.+.|++++.   .+.............   .....|.|.+++.+|.|.|.|.+.|..|.....+
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   77 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVV---TNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANF   77 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEE---ccccEEEEccCCcccCEEEEEEEecCCceEEEEE
Confidence            6889999999999999999998632   111110000000000   0124799999999999999999999999998888


Q ss_pred             EEe
Q psy11826         80 RTD   82 (83)
Q Consensus        80 ~~~   82 (83)
                      .|.
T Consensus        78 ~l~   80 (81)
T cd05765          78 PLS   80 (81)
T ss_pred             EEe
Confidence            775

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.71  E-value=1.1e-15  Score=68.47  Aligned_cols=71  Identities=23%  Similarity=0.474  Sum_probs=53.6

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCC-CCCCeEEEEEeeCCCcceee-EE
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPAT-QKDAGYYECVADNPFAIDRR-GF   79 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~g~~~~-~~   79 (83)
                      |..+.|.|.+.|.|.|.+.|++++..+... .+....         ...|.|..+. .+|+|.|.|.+.|..|.... ..
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~---------~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a   89 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV---------GGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREA   89 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE---------CCEEEECcCCcCCCCEEEEEEEEeCcceEEEccE
Confidence            457999999999999999999999877532 222111         2368888875 68999999999999998644 55


Q ss_pred             EEe
Q psy11826         80 RTD   82 (83)
Q Consensus        80 ~~~   82 (83)
                      +|.
T Consensus        90 ~l~   92 (93)
T cd05849          90 TLS   92 (93)
T ss_pred             EEe
Confidence            554

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.69  E-value=1.5e-15  Score=67.77  Aligned_cols=71  Identities=23%  Similarity=0.366  Sum_probs=54.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee-EEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR-GFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~-~~~   80 (83)
                      .|+.+.|.|.+.|. .|.+.|++++..+.... ....   ..    ...|.|..++.+|.|.|.|.+.|..|.... .+.
T Consensus        17 ~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~-~~~~---~~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~   87 (91)
T cd05740          17 DNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR-LQLS---ND----NRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYI   87 (91)
T ss_pred             cCCcEEEEEEeCCC-CCEEEEEECCEECCCCC-EEEe---CC----CCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEE
Confidence            58899999999999 99999999998765432 2211   01    236999999999999999999999997543 444


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus        88 L   88 (91)
T cd05740          88 L   88 (91)
T ss_pred             E
Confidence            4

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.69  E-value=7.7e-16  Score=69.02  Aligned_cols=75  Identities=23%  Similarity=0.318  Sum_probs=57.4

Q ss_pred             CCceEEEEeEeCc-----cCCCeEEEEeCCEEeccc--ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEG-----FPRPHITWTKDDIELTFH--KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~-----~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      +|+.+.|.|.+.+     .|.|.+.|++++..+...  ...++..       ....|.|..+..+|+|.|.|.+.|..|.
T Consensus        13 ~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-------~~~~L~I~~~~~~DsG~Y~C~~~N~~g~   85 (94)
T cd05756          13 EGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-------QKDLLWFLPAALEDSGLYTCVVRNSTYC   85 (94)
T ss_pred             cCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee-------cCCeEEEccCCcccCeEEEEEEcCCCcc
Confidence            5889999999888     688899999988654321  1111111       0247999999999999999999999999


Q ss_pred             eeeEEEEeC
Q psy11826         75 DRRGFRTDY   83 (83)
Q Consensus        75 ~~~~~~~~~   83 (83)
                      ....+.|.+
T Consensus        86 ~~~~~~L~v   94 (94)
T cd05756          86 MKVSISLTV   94 (94)
T ss_pred             EEEEEEEEC
Confidence            888877653

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.69  E-value=5.6e-16  Score=66.76  Aligned_cols=62  Identities=32%  Similarity=0.584  Sum_probs=48.6

Q ss_pred             EEEEeEeCccCCCeEEEEeCCEEeccc--ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          6 ITFFCMAEGFPRPHITWTKDDIELTFH--KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      +.|.|.+.|.|.|.+.|++++..+...  ......    .    ...|.|..++.+|.|.|.|.+.|..|..
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~----~----~g~L~i~~~~~~D~G~Y~C~a~N~~G~~   64 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL----R----SGALQIENSEESDQGKYECVATNSAGTR   64 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc----C----CcEEEECCCChhhCEEEEEEEECCCCce
Confidence            368999999999999999999876532  222211    1    2358999999999999999999999974

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.69  E-value=5.6e-16  Score=66.28  Aligned_cols=62  Identities=21%  Similarity=0.304  Sum_probs=47.9

Q ss_pred             EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      +.|.|.+.|.|.|.+.|++++..+..... ...   ..    ..+|.|.+++.+|+|.|.|.+.+.....
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~-~~~---~~----~~~L~I~~v~~~D~G~YtC~a~~~~~~~   62 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCS-RYH---VD----GYSLVIKDVTEEDAGIYTILLGIKQYNL   62 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCc-EEE---eC----CCEEEECcCCHHHCEEEEEEEEccccce
Confidence            36889999999999999999988765321 111   11    1369999999999999999999975543

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.69  E-value=3.6e-15  Score=66.60  Aligned_cols=75  Identities=24%  Similarity=0.429  Sum_probs=55.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe-CCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce-eeEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK-DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID-RRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~-~~~~   79 (83)
                      .|+.+.|.|.+.|.|. .+.|++ ++..+....+..+..     ....+.|.|..+..+|+|.|.|.+.|..|.. .+.+
T Consensus        14 ~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~-----~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i   87 (92)
T cd05866          14 VGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQK-----EGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV   87 (92)
T ss_pred             CCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEe-----CCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEE
Confidence            5899999999999987 899998 465554433333211     1113579999999999999999999999875 5555


Q ss_pred             EEe
Q psy11826         80 RTD   82 (83)
Q Consensus        80 ~~~   82 (83)
                      .|.
T Consensus        88 ~l~   90 (92)
T cd05866          88 VLE   90 (92)
T ss_pred             EEE
Confidence            543

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.69  E-value=1.1e-15  Score=67.36  Aligned_cols=67  Identities=27%  Similarity=0.583  Sum_probs=53.7

Q ss_pred             CCceEEEEeEe-CccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMA-EGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~-~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      .|+.+.|.|.+ .+.|.|.+.|++++..+... .......        ...|.|..++.+|.|.|.|.+.|..|...
T Consensus        10 ~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~--------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   78 (86)
T cd05724          10 VGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD--------DGNLLIAEARKSDEGTYKCVATNMVGERE   78 (86)
T ss_pred             CCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc--------CCEEEEeECCcccCEEEEEEEEeccCcee
Confidence            68999999997 68999999999999877653 2222111        24699999999999999999999998754

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.68  E-value=9.9e-15  Score=64.11  Aligned_cols=78  Identities=24%  Similarity=0.480  Sum_probs=60.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+..........    .......|.|..+..+|.|.|.|.+.|..|.....+.|
T Consensus         8 ~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           8 AGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYK----VRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             CCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEE----ccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            58899999999999999999999988765433222111    11123468899999999999999999999998888887


Q ss_pred             eC
Q psy11826         82 DY   83 (83)
Q Consensus        82 ~~   83 (83)
                      ++
T Consensus        84 ~v   85 (85)
T cd05729          84 DV   85 (85)
T ss_pred             eC
Confidence            63

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.67  E-value=4.4e-15  Score=66.98  Aligned_cols=79  Identities=27%  Similarity=0.362  Sum_probs=52.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccc---eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc-eee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK---YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI-DRR   77 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~-~~~   77 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+....   ...... ...+......+....+..+|.|.|.|.+.|..|. ...
T Consensus        15 ~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~   93 (100)
T cd07693          15 KGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIV-LPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSR   93 (100)
T ss_pred             CCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEE-ecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecc
Confidence            58999999999999999999999998776521   111100 0111111112222334689999999999999998 444


Q ss_pred             EEEE
Q psy11826         78 GFRT   81 (83)
Q Consensus        78 ~~~~   81 (83)
                      ...|
T Consensus        94 ~~~l   97 (100)
T cd07693          94 NASL   97 (100)
T ss_pred             eEEE
Confidence            5544

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.67  E-value=2.1e-15  Score=65.40  Aligned_cols=67  Identities=25%  Similarity=0.415  Sum_probs=47.5

Q ss_pred             EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCC----CCCeEEEEEeeCCCcceee
Q psy11826          6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ----KDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~C~~~~~~g~~~~   77 (83)
                      +.|.|.+.|.|.|.+.|++++..+.......+... ..    ...|.|..+..    +|.|.|.|.+.|..|....
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~-~~----~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMK-PD----SGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEe-CC----CCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            46899999999999999999987754321111111 01    23577777643    6899999999999997643

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.67  E-value=5.2e-15  Score=64.16  Aligned_cols=71  Identities=23%  Similarity=0.375  Sum_probs=47.9

Q ss_pred             EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCC----CCCeEEEEEeeCCCcceee-EEE
Q psy11826          6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ----KDAGYYECVADNPFAIDRR-GFR   80 (83)
Q Consensus         6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~C~~~~~~g~~~~-~~~   80 (83)
                      +.|.|.+.|.|.|.+.|++++..+........... ..    .++|.|..+..    .|.|.|.|.+.|..|.... .+.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~-~~----~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~   75 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMK-PN----TGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIV   75 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEe-CC----CceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEE
Confidence            46899999999999999999987643221111100 01    23566666553    3789999999999998654 444


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus        76 ~   76 (77)
T cd05874          76 I   76 (77)
T ss_pred             E
Confidence            3

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.66  E-value=4.2e-15  Score=65.54  Aligned_cols=77  Identities=23%  Similarity=0.315  Sum_probs=54.7

Q ss_pred             ceEEEEeEeCccCCC--eEEEEeCCEEecccce-EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          4 RKITFFCMAEGFPRP--HITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         4 ~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      +.+.|.|.+.+.|.|  .+.|++++..+..... ......  ......+.|.|.+++..|+|.|.|.+.|..|.......
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~   78 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRV--GGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD   78 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEE--ecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence            368899999999887  5689999987764321 100000  00111357999999999999999999999998776665


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus        79 l~   80 (85)
T cd04970          79 LI   80 (85)
T ss_pred             EE
Confidence            53

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.65  E-value=1.5e-14  Score=64.63  Aligned_cols=76  Identities=26%  Similarity=0.487  Sum_probs=54.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe-CCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc-eeeEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK-DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI-DRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~-~~~~~   79 (83)
                      .|+.+.|.|.+.|.| +.+.|++ ++..+.........    ......++|.|.+++.+|.|.|.|.+.|..|. .....
T Consensus        14 ~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv   88 (92)
T cd04977          14 VGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVV----QNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATV   88 (92)
T ss_pred             CCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEE----eCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEE
Confidence            589999999999986 4999997 55544432222211    12223568999999999999999999998654 56666


Q ss_pred             EEe
Q psy11826         80 RTD   82 (83)
Q Consensus        80 ~~~   82 (83)
                      .|.
T Consensus        89 ~l~   91 (92)
T cd04977          89 NLK   91 (92)
T ss_pred             EEE
Confidence            654

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.65  E-value=4.6e-14  Score=62.11  Aligned_cols=78  Identities=24%  Similarity=0.346  Sum_probs=54.0

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc--ceeeEEE
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA--IDRRGFR   80 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g--~~~~~~~   80 (83)
                      |+.++|.|.+.+.|.+.+.|...+......... ............+.|.|.+++.+|+|.|.|.+.+..+  .....+.
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPE-VEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceE-EEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence            788999999999999999999876543221110 0011112233457899999999999999999998765  4444544


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus        80 i   80 (84)
T cd05861          80 I   80 (84)
T ss_pred             E
Confidence            4

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.64  E-value=1.2e-14  Score=64.86  Aligned_cols=68  Identities=25%  Similarity=0.428  Sum_probs=50.3

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCC-CCCCeEEEEEeeCCCcceee
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPAT-QKDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~g~~~~   77 (83)
                      |+.+.|.|.+.|.|.|.+.|++++..+..........       ....|.|.++. .+|.|.|.|.+.|..|....
T Consensus        19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~-------~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL-------VGGNLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE-------ECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            4679999999999999999999998774322111110       01357787776 48999999999999997654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.64  E-value=2.5e-14  Score=64.25  Aligned_cols=75  Identities=29%  Similarity=0.524  Sum_probs=52.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccC-----CCCCCeEEEEEeeCC-Ccce
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPA-----TQKDAGYYECVADNP-FAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~~~g~y~C~~~~~-~g~~   75 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+........... ..     ..+.+..+     ...|.|.|.|.+.|. .|..
T Consensus        13 ~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~-~~-----~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~   86 (95)
T cd05722          13 RGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQL-PN-----GSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSI   86 (95)
T ss_pred             CCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEc-cC-----CeEEEeeeeccCCCCCcCEEEEEEEECCccCcE
Confidence            588999999999999999999999987764322111110 01     12444443     688999999999999 8876


Q ss_pred             -eeEEEEe
Q psy11826         76 -RRGFRTD   82 (83)
Q Consensus        76 -~~~~~~~   82 (83)
                       ...+.|.
T Consensus        87 ~s~~~~l~   94 (95)
T cd05722          87 VSRTARLT   94 (95)
T ss_pred             EEeeeEEe
Confidence             4455553

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.64  E-value=1.3e-14  Score=62.88  Aligned_cols=67  Identities=25%  Similarity=0.376  Sum_probs=46.2

Q ss_pred             EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCC----CCCeEEEEEeeCCCcceee
Q psy11826          6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ----KDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~~g~y~C~~~~~~g~~~~   77 (83)
                      +.|.|.+.|.|.|.+.|++++..+.......+... ..    ..+|.|..+..    .|.|.|.|.+.|..|....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~-~~----~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMR-RR----SGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEe-CC----CceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            46899999999999999999986643221111110 01    23677776542    3589999999999997654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.63  E-value=7.4e-15  Score=64.19  Aligned_cols=63  Identities=19%  Similarity=0.332  Sum_probs=49.2

Q ss_pred             CCceEEEEeEeCccCCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826          2 LGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~   77 (83)
                      .|+.+.|.|.+.|.|.| .+.|.+++..+.....           ...+.|.|..+  .|.|.|.|.+.|..|...+
T Consensus        12 ~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~-----------~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749          12 ANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPA-----------PSPSVLNVPGL--NETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             CCCCEEEEEEeeeecCCeEEEEEECCEECCCCCC-----------CCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence            58899999999999999 7999999987753110           01246777776  4779999999999997654

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.62  E-value=1.4e-14  Score=63.07  Aligned_cols=68  Identities=26%  Similarity=0.511  Sum_probs=48.4

Q ss_pred             EEEEeEeCccCCCeEEEEeCCEEe-cc-------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce-e
Q psy11826          6 ITFFCMAEGFPRPHITWTKDDIEL-TF-------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID-R   76 (83)
Q Consensus         6 ~~~~C~~~~~~~~~~~w~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~-~   76 (83)
                      +.|.|.+.|.|.|.+.|++.+... +.       ..+....        ...+|.|..+..+|.|.|.|.+.|..|.. .
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s   72 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL--------SNGSLLIKHVLEEDSGYYLCKVSNDVGADAS   72 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe--------cCCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence            468999999999999999864321 11       1111110        12479999999999999999999999976 4


Q ss_pred             eEEEE
Q psy11826         77 RGFRT   81 (83)
Q Consensus        77 ~~~~~   81 (83)
                      ....|
T Consensus        73 ~~~~l   77 (79)
T cd05734          73 KSMVL   77 (79)
T ss_pred             eEEEE
Confidence            44444

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.61  E-value=1.4e-14  Score=63.75  Aligned_cols=77  Identities=18%  Similarity=0.228  Sum_probs=53.9

Q ss_pred             ceEEEEeEeCc--cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          4 RKITFFCMAEG--FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         4 ~~~~~~C~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      +.+.|.|.+.+  .+.+.+.|+++|..+.......... ........+.|.|.+++.+|.|.|+|.+.+..+.......|
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~-~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L   79 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFE-RVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADL   79 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEE-EeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEE
Confidence            35789999876  4577899999999886421110110 01111113479999999999999999999999987666554

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.59  E-value=4.3e-14  Score=61.10  Aligned_cols=72  Identities=18%  Similarity=0.378  Sum_probs=51.4

Q ss_pred             EEEEeEeCc-cCCCeEEEEeCCEEecccc--eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          6 ITFFCMAEG-FPRPHITWTKDDIELTFHK--YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         6 ~~~~C~~~~-~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      +.|.|.+.+ .|.+.+.|++++..+....  ...+..   ......+.|.|.++..+|+|.|.|.+.|..|.......
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~---~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKI---RKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEE---EeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            368899764 6778999999998775321  111111   11122457999999999999999999999998776543

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.59  E-value=1.4e-13  Score=61.95  Aligned_cols=81  Identities=20%  Similarity=0.280  Sum_probs=64.2

Q ss_pred             CCceEEEEeEeCccCCCe-EEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      +|+.+.+.|.++.+|+|. +.|.+.+..+................++.+.|.|.+++.++.|.|+|.+.|........|.
T Consensus        17 ~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~   96 (101)
T cd05860          17 AGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVTFN   96 (101)
T ss_pred             CCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEEEE
Confidence            588999999999999998 9999887765443322222222234567889999999999999999999999999988887


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |+
T Consensus        97 l~   98 (101)
T cd05860          97 VY   98 (101)
T ss_pred             EE
Confidence            75

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.59  E-value=3.1e-14  Score=62.75  Aligned_cols=69  Identities=23%  Similarity=0.404  Sum_probs=54.0

Q ss_pred             CCceEEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.++|.|.+.+ .|.+.+.|++++..++....           .....|.|..++.+|+|.|.|.+.|..|.......
T Consensus        15 ~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~-----------~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~   83 (85)
T cd05754          15 PGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAM-----------DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATAT   83 (85)
T ss_pred             CCCCEEEEEEcCCCCCCcEEEEEECCCcCCCccc-----------ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEE
Confidence            5899999999864 68889999998765432210           01247999999999999999999999998877665


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus        84 l   84 (85)
T cd05754          84 L   84 (85)
T ss_pred             E
Confidence            4

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.57  E-value=3.6e-13  Score=60.70  Aligned_cols=80  Identities=20%  Similarity=0.331  Sum_probs=59.3

Q ss_pred             CCceEEEEeEeCccCCCe-EEEEeCCEEeccc--ceEEEEEEecCCCeEEEEEEEccCCCCC-CeEEEEEeeCCCcceee
Q psy11826          2 LGRKITFFCMAEGFPRPH-ITWTKDDIELTFH--KYFQVHEWFLGNNTIKSKMEIDPATQKD-AGYYECVADNPFAIDRR   77 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~-~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~g~~~~   77 (83)
                      .|+.+.|.|.+.+.|.|. +.|...+..+...  .++.+... .......+.|.|.++...| .|.|.|.+.|..|.+..
T Consensus        15 ~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~-~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~~   93 (98)
T cd05898          15 RGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERT-STGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGTA   93 (98)
T ss_pred             CCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEE-ccCCCcEEEEEECCCccccCCcEEEEEEEeCCccceE
Confidence            589999999998888874 6777666555432  23333332 2234456789999998878 68999999999999988


Q ss_pred             EEEEe
Q psy11826         78 GFRTD   82 (83)
Q Consensus        78 ~~~~~   82 (83)
                      .+.|+
T Consensus        94 ~i~L~   98 (98)
T cd05898          94 IIQLE   98 (98)
T ss_pred             EEEeC
Confidence            88764

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.51  E-value=5.9e-13  Score=55.00  Aligned_cols=63  Identities=37%  Similarity=0.634  Sum_probs=48.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+.+.+.+.|++++..+....  ...       .....|.|..++..|.|.|.|.+.+..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~--~~~-------~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESN--RLS-------ASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCCCC--EEe-------cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            47899999998888899999999887776211  110       0124799999999999999999988654

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.51  E-value=2.8e-13  Score=60.53  Aligned_cols=68  Identities=24%  Similarity=0.237  Sum_probs=51.4

Q ss_pred             CCceEEEEeEeCc-----cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAEG-----FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~~-----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      .|+...+.|...+     .|.|.+.|++++..+........         ....|.|..+..+|+|.|.|.+.+..+...
T Consensus         9 ~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~---------~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~   79 (92)
T cd05757           9 STKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV---------KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ   79 (92)
T ss_pred             eccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe---------cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence            4778899998543     25789999999988775432211         134799999999999999999998877654


Q ss_pred             eE
Q psy11826         77 RG   78 (83)
Q Consensus        77 ~~   78 (83)
                      ..
T Consensus        80 ~~   81 (92)
T cd05757          80 YN   81 (92)
T ss_pred             EE
Confidence            43

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.50  E-value=6.3e-13  Score=57.74  Aligned_cols=54  Identities=24%  Similarity=0.463  Sum_probs=43.9

Q ss_pred             CCceEEEEeEeCccCC-CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPR-PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.++|.|.+.+.|. +.+.|++++..+...               ...|.|..+ .+|+|.|.|.+.+.
T Consensus        14 ~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~---------------~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          14 QGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT---------------TNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CCCCEEEEEeCCCCCCCccEEEEECCEEeecc---------------CCeEEEeec-ccCCEEeEEECCCC
Confidence            6899999999988776 469999999876321               135788888 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.50  E-value=1.9e-12  Score=58.17  Aligned_cols=65  Identities=15%  Similarity=0.350  Sum_probs=47.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecc--------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTF--------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      .|+.+.|.|.+.+.|.|.+.|++.+..+..        ..++.+.    ........|.|.++..+|.|.|.|.+..
T Consensus        11 ~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882          11 VGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLV----KSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             cCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEE----eCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            689999999999999999999987753311        1111111    1111245799999999999999999876

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.48  E-value=1.5e-12  Score=57.53  Aligned_cols=61  Identities=23%  Similarity=0.392  Sum_probs=47.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccc-eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK-YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .|+++.|.|.+. .+.+.+.|.++|..+.... ...+.         ...|.|.+++.+|+|.|.|.+.+..
T Consensus        10 ~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~r~~~~---------~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873          10 LGNNAELKCSPK-SNLARVVWKFDGKVLTPESAKYLLY---------RDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CCCCEEEEEECC-CCCCeEEEEECCEECCCCCceEEEE---------CCcEEEeCCCHHHCEEEEEEEEecc
Confidence            589999999975 4678999999999887542 22111         1358999999999999999997653

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.46  E-value=2.5e-12  Score=56.81  Aligned_cols=79  Identities=19%  Similarity=0.264  Sum_probs=51.9

Q ss_pred             CceEEEEeEeCccC--CCeEEEEeCCEEecccceEEE-EEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          3 GRKITFFCMAEGFP--RPHITWTKDDIELTFHKYFQV-HEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         3 g~~~~~~C~~~~~~--~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      |+.+.|.|.+.+.+  ...+.|...+........... ...........+.|.|.+++.+|+|.|.|.+.|..+......
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            78899999987655  446799876654321110000 000011123457899999999999999999999888766555


Q ss_pred             EE
Q psy11826         80 RT   81 (83)
Q Consensus        80 ~~   81 (83)
                      .|
T Consensus        81 ~~   82 (86)
T cd05862          81 IV   82 (86)
T ss_pred             EE
Confidence            44

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>KOG3513|consensus

Probab=99.45  E-value=1.4e-12  Score=76.84  Aligned_cols=73  Identities=26%  Similarity=0.464  Sum_probs=57.8

Q ss_pred             CCCceEEEEeEeCccCCCeEEEEeCCEE-ecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          1 MLGRKITFFCMAEGFPRPHITWTKDDIE-LTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      +.|+.+.|.|.+.|.|.|.+.|.+.+.. ++......         ....+|.|.+++.+|+|.|.|.+.|..|...+..
T Consensus       254 ~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~---------~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~  324 (1051)
T KOG3513|consen  254 LKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYS---------NYGKVLKIPNVQYEDAGEYECIAENSRGSATHSG  324 (1051)
T ss_pred             cCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeee---------ccccEEEecccCcCCCeEEEEEEecccccceeeE
Confidence            3689999999999999999999998764 33322211         1135899999999999999999999999777666


Q ss_pred             EEe
Q psy11826         80 RTD   82 (83)
Q Consensus        80 ~~~   82 (83)
                      .+.
T Consensus       325 ~v~  327 (1051)
T KOG3513|consen  325 HVT  327 (1051)
T ss_pred             EEE
Confidence            553

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.45  E-value=2.2e-12  Score=57.25  Aligned_cols=72  Identities=14%  Similarity=0.194  Sum_probs=50.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccce--EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC-cceeeE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKY--FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF-AIDRRG   78 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-g~~~~~   78 (83)
                      .|+.+.|.|...+ |.+.+.|++++..+.....  .+...   .    ...|.|..++.+|+|.|.|.+.+.. +.....
T Consensus        10 ~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~---~----~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~   81 (89)
T cd04979          10 EGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV---T----EDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT   81 (89)
T ss_pred             CCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE---c----CCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence            5889999999876 8889999999876554320  11111   0    1248899999999999999998654 344555


Q ss_pred             EEE
Q psy11826         79 FRT   81 (83)
Q Consensus        79 ~~~   81 (83)
                      +.|
T Consensus        82 ~~l   84 (89)
T cd04979          82 YSL   84 (89)
T ss_pred             EEE
Confidence            544

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.43  E-value=5e-12  Score=52.82  Aligned_cols=63  Identities=27%  Similarity=0.513  Sum_probs=45.5

Q ss_pred             CceEEEEeEe-CccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          3 GRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         3 g~~~~~~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      |+.+.|.|.+ ...+.+.+.|.+++.............   ........|.|.+++.+|+|.|.|.+
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRST---NSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEE---TTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeec---ccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999998 667788999999887655443222111   12222225999999999999999975

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>KOG3513|consensus

Probab=99.41  E-value=1.4e-12  Score=76.78  Aligned_cols=73  Identities=27%  Similarity=0.471  Sum_probs=61.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|..+.+.|...+.|.|.++|.+.+..+....++.+.+        ..+|.|.+++++|+|.|+|.+.|..|.......|
T Consensus       440 ~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~e--------dGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L  511 (1051)
T KOG3513|consen  440 VGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILE--------DGTLEISNVTRSDAGKYTCVAENKLGKAESTGNL  511 (1051)
T ss_pred             eCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECC--------CCcEEecccCcccCcEEEEEEEcccCccceEEEE
Confidence            47789999999999999999999888666666655543        3579999999999999999999999988776655


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       512 ~  512 (1051)
T KOG3513|consen  512 I  512 (1051)
T ss_pred             E
Confidence            4

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.41  E-value=4.1e-12  Score=56.92  Aligned_cols=72  Identities=13%  Similarity=0.104  Sum_probs=49.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEe-cccc-eE------------EEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIEL-TFHK-YF------------QVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~-~~~~-~~------------~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+++.|.|...+.+.+.+.|+++++.. .... ..            ....  .........|.|.+++.+|+|.|.|.
T Consensus         6 ~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~--~~~~~g~~~L~I~~l~~sDsgtY~C~   83 (94)
T cd07690           6 KGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR--NLWDQGSFPLIIKNLKIEDSDTYICE   83 (94)
T ss_pred             CCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceec--ccCCCCeEEEEECCCCHHHCEEEEEE
Confidence            6899999999988899999999766332 2111 11            1000  01112345799999999999999999


Q ss_pred             eeCCCcce
Q psy11826         68 ADNPFAID   75 (83)
Q Consensus        68 ~~~~~g~~   75 (83)
                      +.|..+..
T Consensus        84 v~~~~~~~   91 (94)
T cd07690          84 VEDKKEEV   91 (94)
T ss_pred             ECCccceE
Confidence            98876543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=99.40  E-value=3.1e-11  Score=52.82  Aligned_cols=77  Identities=22%  Similarity=0.271  Sum_probs=49.4

Q ss_pred             EEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc--eeeEEEEe
Q psy11826          6 ITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI--DRRGFRTD   82 (83)
Q Consensus         6 ~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~--~~~~~~~~   82 (83)
                      +.|.|.+.+ .|.+.+.|++++..+...................+.|.+......|.+.|.|.+.+....  ....+.|+
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~   81 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLD   81 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence            678999887 688899999999877543211111110111233457888777777889999999886543  34445543

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.40  E-value=2.4e-11  Score=54.60  Aligned_cols=66  Identities=12%  Similarity=0.227  Sum_probs=46.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEec--------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELT--------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      +|+.+.|.|.+.+.|.+.+.|++.+....        ...++...    .......+|.|.+++.+|+|.|.|.+...
T Consensus        11 eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~----~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~   84 (95)
T cd07701          11 EGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELV----RASWHELSISISDVSLSDEGQYTCSLFTM   84 (95)
T ss_pred             cCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEE----ECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence            68999999999999999999986432211        11122110    11112357999999999999999999864

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>smart00410 IG_like Immunoglobulin like

Probab=99.40  E-value=8.7e-11  Score=51.00  Aligned_cols=75  Identities=29%  Similarity=0.476  Sum_probs=55.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC-CEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD-DIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.+.+.+.|+++ +..+...........  ..   ...|.|..+..+|.|.|.|.+.+..+.....+.
T Consensus         8 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~--~~---~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00410        8 EGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRS--GS---NSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             CCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEc--CC---eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            589999999998888889999998 766653332222211  11   457999999999999999999988776655555


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus        83 l   83 (86)
T smart00410       83 L   83 (86)
T ss_pred             E
Confidence            4

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=99.40  E-value=8.7e-11  Score=51.00  Aligned_cols=75  Identities=29%  Similarity=0.476  Sum_probs=55.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC-CEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD-DIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.+.+.+.|+++ +..+...........  ..   ...|.|..+..+|.|.|.|.+.+..+.....+.
T Consensus         8 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~--~~---~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00409        8 EGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRS--GS---NSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             CCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEc--CC---eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            589999999998888889999998 766653332222211  11   457999999999999999999988776655555


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus        83 l   83 (86)
T smart00409       83 L   83 (86)
T ss_pred             E
Confidence            4

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.40  E-value=6.7e-12  Score=55.12  Aligned_cols=61  Identities=21%  Similarity=0.266  Sum_probs=47.9

Q ss_pred             CCceEEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.++|.|.... .+.+.+.|++++..+....             ....|.|..++.+|+|.|.|.+.+..+..
T Consensus        13 ~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~-------------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~   74 (83)
T cd05753          13 EGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH-------------SNSNLSIPQATLSDSGSYHCSGIIGSYDY   74 (83)
T ss_pred             CCCCEEEEeeCCCCCcceEEEEEECCeEccccC-------------CCceEEECccCHHHCEEEEEEEEeCCcee
Confidence            6899999999754 5566799999987554211             02469999999999999999999988753

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.38  E-value=8.1e-12  Score=63.85  Aligned_cols=64  Identities=23%  Similarity=0.447  Sum_probs=49.1

Q ss_pred             CCceEEEEeEeC-----ccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          2 LGRKITFFCMAE-----GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~-----~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .|+.+.|.|.+.     +.|.|.+.|++++..+....+.....   .    ...|.|.+++.+|+|.|.|.+....
T Consensus       143 ~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~---~----~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        143 SGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRN---N----NSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             cCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeC---C----CCEEEECcCCHHhCEEEEEEEEEeE
Confidence            588899999875     34678999999999887544433211   1    2379999999999999999998754

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.37  E-value=4.8e-12  Score=56.77  Aligned_cols=66  Identities=18%  Similarity=0.381  Sum_probs=48.2

Q ss_pred             CCceEEEEeE-eCccCCCeEEEEeCCEEecc--cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCM-AEGFPRPHITWTKDDIELTF--HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~-~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      +|+.+.|.|. ..+.|.|.+.|++++..+..  ..+..+.    .   ....|.+..++.+|.|.|.|.+.|....
T Consensus        17 eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~----~---~~G~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          17 EGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVS----Q---TNGNLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             eCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEe----C---CCCcEEEeecCHhhCceeEEEEEecccC
Confidence            5889999997 56889999999998764322  1111111    0   0246999999999999999999987543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.35  E-value=4e-11  Score=53.50  Aligned_cols=70  Identities=14%  Similarity=0.277  Sum_probs=47.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--EEecc----cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEee-CCCcc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--IELTF----HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD-NPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~-~~~g~   74 (83)
                      .|+.+.|.|.. +.|.|.+.|++.+  .....    ..+...         ....|.|..+..+|+|.|.|.+. +..+.
T Consensus        10 eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~---------~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~   79 (91)
T cd05871          10 ENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH---------TERGLLLRSLQRSDAGVYTCTAVEHSFSQ   79 (91)
T ss_pred             cCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE---------ecCeEEEeeCChhHCEEEEEEEEccCCeE
Confidence            68899999995 5788999999732  22111    111111         12359999999999999999997 45554


Q ss_pred             eeeEEEE
Q psy11826         75 DRRGFRT   81 (83)
Q Consensus        75 ~~~~~~~   81 (83)
                      ......|
T Consensus        80 ~~~~~~l   86 (91)
T cd05871          80 TLAKYTL   86 (91)
T ss_pred             EEEEEEE
Confidence            4444444

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.32  E-value=9.2e-11  Score=62.86  Aligned_cols=76  Identities=20%  Similarity=0.394  Sum_probs=53.7

Q ss_pred             CCceEEEEeEeCccCCC---eEEEEeCCEEecccc-----eEEEEE--Ee-cCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRP---HITWTKDDIELTFHK-----YFQVHE--WF-LGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~---~~~w~~~~~~~~~~~-----~~~~~~--~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      .|+.+.|.|.+.+.|.+   .+.|.++|..+....     ......  .. .........|.|.+++.+|.|.|.|.+.|
T Consensus       234 ~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n  313 (326)
T PHA02785        234 IGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFT  313 (326)
T ss_pred             CCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEe
Confidence            48899999999988864   799999998775421     111110  00 01112346799999999999999999999


Q ss_pred             CCcceee
Q psy11826         71 PFAIDRR   77 (83)
Q Consensus        71 ~~g~~~~   77 (83)
                      ..+....
T Consensus       314 ~~~~~~~  320 (326)
T PHA02785        314 IPSISKT  320 (326)
T ss_pred             ccCceEe
Confidence            8866543

>KOG4194|consensus

Probab=99.31  E-value=1.1e-11  Score=70.27  Aligned_cols=72  Identities=26%  Similarity=0.424  Sum_probs=54.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEE-ecc--cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIE-LTF--HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG   78 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~   78 (83)
                      .|+.+.+.|.+.|.|.|.|.|.++|.. ++.  ..++...+  .+     -.+-|.+++.+|.|.|+|.+.|..|.....
T Consensus       626 tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmp--ed-----d~f~Itnvk~eD~GiYtC~A~n~AG~isan  698 (873)
T KOG4194|consen  626 TGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMP--ED-----DVFFITNVKIEDQGIYTCTAQNVAGQISAN  698 (873)
T ss_pred             cccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecC--CC-----CEEEEecccccccceeEEeeeccccceeec
Confidence            588899999999999999999997754 443  22222222  12     257788999999999999999999986654


Q ss_pred             EE
Q psy11826         79 FR   80 (83)
Q Consensus        79 ~~   80 (83)
                      ..
T Consensus       699 At  700 (873)
T KOG4194|consen  699 AT  700 (873)
T ss_pred             eE
Confidence            43

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.28  E-value=3.3e-10  Score=49.32  Aligned_cols=74  Identities=15%  Similarity=0.301  Sum_probs=51.1

Q ss_pred             EEEEeEeC-ccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc---eeeEEEE
Q psy11826          6 ITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI---DRRGFRT   81 (83)
Q Consensus         6 ~~~~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~---~~~~~~~   81 (83)
                      +.|.|... +.|++.+.|++++..+......   ..........++|.+......|.+.|.|.+.|..+.   .+....|
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~---~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l   78 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQ---QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSL   78 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCccc---ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEE
Confidence            67899964 6899999999999988653210   000111223457999888888899999999997664   3444444


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      +
T Consensus        79 ~   79 (80)
T cd05885          79 D   79 (80)
T ss_pred             e
Confidence            4

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.28  E-value=2.4e-10  Score=51.78  Aligned_cols=75  Identities=16%  Similarity=0.234  Sum_probs=51.9

Q ss_pred             CCCceEEEEeEeC-----------ccCCCeEEEEeCCEEecccce-----EEEEEEecCCCeEEEEEEEccCCCCCCeEE
Q psy11826          1 MLGRKITFFCMAE-----------GFPRPHITWTKDDIELTFHKY-----FQVHEWFLGNNTIKSKMEIDPATQKDAGYY   64 (83)
Q Consensus         1 ~~g~~~~~~C~~~-----------~~~~~~~~w~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y   64 (83)
                      +.|+.+.+.|...           ......+.|++++........     .++..       ....|.|.++..+|+|.|
T Consensus        13 ~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~-------~~~~Lwf~Pa~~eDSG~Y   85 (104)
T cd05896          13 LAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSK-------EEDSIWFRPAELQDSGLY   85 (104)
T ss_pred             cCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEE-------eCCEEEEEeCChhhCeEE
Confidence            4689999999951           112347899998744433221     11111       124799999999999999


Q ss_pred             EEEeeCCCcceeeEEEEe
Q psy11826         65 ECVADNPFAIDRRGFRTD   82 (83)
Q Consensus        65 ~C~~~~~~g~~~~~~~~~   82 (83)
                      .|.+.|........+.|.
T Consensus        86 ~C~~rN~t~C~~~~i~l~  103 (104)
T cd05896          86 TCVLRNSTYCMKVSMSLT  103 (104)
T ss_pred             EEEECCCCcceEEEEEEE
Confidence            999999887777776664

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.28  E-value=4.9e-10  Score=50.27  Aligned_cols=67  Identities=15%  Similarity=0.245  Sum_probs=45.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEec--------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELT--------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      +|+.+.|.|.+.+.+.+.+.|++.+..+.        ...++...    ........|.|.+++.+|+|.|.|.+....
T Consensus        11 ~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   85 (95)
T cd05717          11 EGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLV----NFSANELSISISNVSLSDEGRYTCSLYTMP   85 (95)
T ss_pred             CCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEE----cCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence            69999999999888888999986332111        01111110    111123479999999999999999998754

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>KOG4221|consensus

Probab=99.26  E-value=1.3e-10  Score=69.63  Aligned_cols=72  Identities=22%  Similarity=0.464  Sum_probs=55.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC--CCcceeeEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN--PFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~--~~g~~~~~~   79 (83)
                      .|+.+.|.|.+.+.|.|.+.|.+++..+...+ .++...      ..+.|.|.+++..|+|.|+|.+.|  ..+...+..
T Consensus       251 ~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds-~rivl~------g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev  323 (1381)
T KOG4221|consen  251 EGDDVVLECVVSGVPKPSVKWLRNGEKISVDS-YRIVLV------GGSSLLISNATDDDSGKYTCRATNTNDSIDASAEV  323 (1381)
T ss_pred             cCCcEEEEEEecCCCCCceEEeeCCeeeeecc-eEEEEe------cccceEEeccccccCceEEEEecCCCcccccceEE
Confidence            58999999999999999999999999887654 222221      135799999999999999999998  344444444


Q ss_pred             E
Q psy11826         80 R   80 (83)
Q Consensus        80 ~   80 (83)
                      .
T Consensus       324 ~  324 (1381)
T KOG4221|consen  324 T  324 (1381)
T ss_pred             E
Confidence            3

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.25  E-value=3.4e-11  Score=53.98  Aligned_cols=64  Identities=16%  Similarity=0.246  Sum_probs=47.3

Q ss_pred             CCceEEEEeE-eCccCCCeEEEEeCCEEecc-cceEEEEEEecCCCeEEEEEEEccCCCCCCe-EEEEEeeCCCc
Q psy11826          2 LGRKITFFCM-AEGFPRPHITWTKDDIELTF-HKYFQVHEWFLGNNTIKSKMEIDPATQKDAG-YYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~-~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~~~~~~g   73 (83)
                      +|+.+.|.|. ..|.|.|.+.|..++..... ..+..+.        ....|.|.++..+|.| .|.|.+.+...
T Consensus        17 eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~--------~~GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          17 EGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG--------QNGNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             cCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC--------CCceEEEEEEehhhCCCCeEEEEEcccc
Confidence            5899999997 68999999999976543222 2221111        1247999999999999 79999998654

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.25  E-value=1.4e-10  Score=50.12  Aligned_cols=65  Identities=23%  Similarity=0.456  Sum_probs=49.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc-ceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA-IDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g-~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+.....               .+.+..+..+|.|.|.|.+.+..+ .....+.
T Consensus        13 ~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~---------------~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~   77 (80)
T PF13895_consen   13 EGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN---------------GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVN   77 (80)
T ss_dssp             TTSEEEEEEEEESSSSSEEEEEETTEEEEEESS---------------EEEESSEEGGGTEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCcEEEEEEEEcccceeeeeeeeeeeeeeeee---------------eeeeeeeccccCEEEEEEEEeCCCCeEeeeEE
Confidence            589999999999888899999998866663221               155577888999999999988554 3444555


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus        78 v   78 (80)
T PF13895_consen   78 V   78 (80)
T ss_dssp             E
T ss_pred             e
Confidence            4

...

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.24  E-value=6.6e-11  Score=53.10  Aligned_cols=68  Identities=16%  Similarity=0.242  Sum_probs=47.8

Q ss_pred             CCceEEEEeEe-Cc----cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMA-EG----FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~-~~----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|....+.|.- .+    .+.|.+.|++++..+........ ..  .+   ...|.|..+..+|+|.|+|.+.+..+..
T Consensus         9 ~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~-~~--~~---~~~L~I~~v~~~D~G~YtC~~~~~~~g~   81 (95)
T cd05897           9 TSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFY-SL--KG---STYLHIIDVSLNDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             cccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceE-ec--CC---CCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence            46778899972 23    46679999999988764321111 00  01   2359999999999999999999986654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.22  E-value=1.1e-10  Score=62.50  Aligned_cols=69  Identities=25%  Similarity=0.381  Sum_probs=49.7

Q ss_pred             CCceEEEEeEe-----CccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMA-----EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~-----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      .|+.+.+.|..     .|.|.+.+.|++++.....     ...  ...   ...|.+..+..+|+|.|.|.+.|..+...
T Consensus        40 ~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~-----~~~--~~~---g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~  109 (326)
T PHA02785         40 ENEPVILPCPQINTLSSGYNILDILWEKRGADNDR-----IIP--IDN---GSNMLILNPTQSDSGIYICITKNETYCDM  109 (326)
T ss_pred             cCCCEEEECCCccccccCCCCceEEEEECCCccce-----EEE--ccC---CceEEEcccCcccCeEEEEEEECCCcceE
Confidence            58889999996     5888899999998743211     111  011   12477889999999999999999987655


Q ss_pred             eEEE
Q psy11826         77 RGFR   80 (83)
Q Consensus        77 ~~~~   80 (83)
                      ..+.
T Consensus       110 ~s~~  113 (326)
T PHA02785        110 MSLN  113 (326)
T ss_pred             EEEE
Confidence            5443

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=99.20  E-value=8.1e-10  Score=50.50  Aligned_cols=81  Identities=20%  Similarity=0.312  Sum_probs=50.5

Q ss_pred             CCceEEEEeEeCccC------CCeEEEEeCC-----E-Eecc--cceEEE------EEEecCCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGFP------RPHITWTKDD-----I-ELTF--HKYFQV------HEWFLGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~------~~~~~w~~~~-----~-~~~~--~~~~~~------~~~~~~~~~~~~~l~i~~~~~~~~   61 (83)
                      .|+.+.|.|.....+      .+.+.|++..     . .+..  ......      .-..........+|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            488999999976542      5689999862     1 1110  111100      000001123457899999999999


Q ss_pred             eEEEEEeeCCCcceeeEEEEe
Q psy11826         62 GYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus        62 g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      |.|.|.+.+..+.....+.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~  101 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELE  101 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEE
Confidence            999999998766655555443

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd00098 IgC Immunoglobulin Constant domain

Probab=99.18  E-value=5.6e-10  Score=49.98  Aligned_cols=72  Identities=28%  Similarity=0.473  Sum_probs=50.5

Q ss_pred             CCceEEEEeEeCcc-CC-CeEEEEeCCEEecccce-EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGF-PR-PHITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~-~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.+.|.+.+. |. +.+.|+++|..+..... .......++.....+.|.+......+.+.|.|.+.+...
T Consensus        12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            47889999999997 53 57999999988765432 112222222344556788777777789999999988655

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=99.15  E-value=1.9e-09  Score=49.28  Aligned_cols=81  Identities=15%  Similarity=0.189  Sum_probs=50.3

Q ss_pred             CCceEEEEeEeCccC------CCeEEEEeCCEE-----e-c-cc-ceEEEE-----EE-ecCCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGFP------RPHITWTKDDIE-----L-T-FH-KYFQVH-----EW-FLGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~------~~~~~w~~~~~~-----~-~-~~-~~~~~~-----~~-~~~~~~~~~~l~i~~~~~~~~   61 (83)
                      .|++++|.|.....|      ...|.|++....     . . .. ......     .. .........+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            488999999875542      356999985311     0 0 00 000000     00 001112245799999999999


Q ss_pred             eEEEEEeeCCCcceeeEEEEe
Q psy11826         62 GYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus        62 g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      |.|.|.+.+..+.....+.|+
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~  101 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALR  101 (106)
T ss_pred             EEEEEEEEecccceEEEEEEE
Confidence            999999998887776666554

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=99.14  E-value=2e-09  Score=49.75  Aligned_cols=80  Identities=20%  Similarity=0.275  Sum_probs=49.2

Q ss_pred             CCceEEEEeEeCccC------------CCeEEEEeCC--EE--ec--ccceEEEE-----EEecC---CCeEEEEEEEcc
Q psy11826          2 LGRKITFFCMAEGFP------------RPHITWTKDD--IE--LT--FHKYFQVH-----EWFLG---NNTIKSKMEIDP   55 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~------------~~~~~w~~~~--~~--~~--~~~~~~~~-----~~~~~---~~~~~~~l~i~~   55 (83)
                      +|++++|.|......            .+.+.|++..  ..  +.  ........     +....   .......|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            589999999976432            4589999742  11  11  00111100     11111   122457899999


Q ss_pred             CCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826         56 ATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus        56 ~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      ++.+|+|.|.|.+.+..........|
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l  106 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEV  106 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEE
Confidence            99999999999999776655554444

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.12  E-value=5.2e-10  Score=57.35  Aligned_cols=81  Identities=15%  Similarity=0.298  Sum_probs=51.9

Q ss_pred             CCCceEEEEeEeCccC-----------CCeEEEEeCCEEeccc---ceEEEEEEecCC-CeEEEEEEEccCCCCCCeEEE
Q psy11826          1 MLGRKITFFCMAEGFP-----------RPHITWTKDDIELTFH---KYFQVHEWFLGN-NTIKSKMEIDPATQKDAGYYE   65 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~-----------~~~~~w~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~   65 (83)
                      .+|+.+.|.|.+.+.+           .+.+.|++.+......   ......+..... ......|.|.+++.+|+|.|.
T Consensus        35 ~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~Y~  114 (227)
T PHA02826         35 KFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGIYI  114 (227)
T ss_pred             cCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCEEEE
Confidence            3689999999986643           4589999987542110   000000000000 011347999999999999999


Q ss_pred             EEeeCCCcceeeEEEE
Q psy11826         66 CVADNPFAIDRRGFRT   81 (83)
Q Consensus        66 C~~~~~~g~~~~~~~~   81 (83)
                      |.+.|..+.......|
T Consensus       115 C~a~N~~~~~~~~i~L  130 (227)
T PHA02826        115 CTISSGNICEESTIRL  130 (227)
T ss_pred             EEEEECCcceEEEEEE
Confidence            9999988776665554

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=99.11  E-value=1.7e-09  Score=46.06  Aligned_cols=57  Identities=35%  Similarity=0.589  Sum_probs=39.4

Q ss_pred             EEEEeEeCccC-CCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          6 ITFFCMAEGFP-RPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         6 ~~~~C~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      +.|.|.+.+.+ .+.+.|+ .......       ..........+.|.+..+..+|.|.|.|.+.|
T Consensus        18 ~~l~C~~~~~~~~~~~~W~-~~~~~~~-------~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWY-DSNPSFN-------SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEESSEEEEEE-TEEEEEE-------EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEE-ecCCcee-------eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            89999998877 7789999 1111110       00111223356899999999999999999875

...

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=99.09  E-value=7.9e-09  Score=46.72  Aligned_cols=35  Identities=14%  Similarity=0.264  Sum_probs=29.6

Q ss_pred             EEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826         48 KSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus        48 ~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      ..+|.|.+++.+|+|.|.|.+.+..+..+..+.|.
T Consensus        64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~   98 (100)
T cd05713          64 SVALRIHNVRASDEGLYTCFFQSDGFYEEATVELK   98 (100)
T ss_pred             cEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEE
Confidence            46899999999999999999998777777666654

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=99.08  E-value=1.1e-08  Score=47.16  Aligned_cols=81  Identities=23%  Similarity=0.345  Sum_probs=49.2

Q ss_pred             CCceEEEEeEeCccC----------CCeEEEEeC--CEEecc----cceEEEE-----EEec---CCCeEEEEEEEccCC
Q psy11826          2 LGRKITFFCMAEGFP----------RPHITWTKD--DIELTF----HKYFQVH-----EWFL---GNNTIKSKMEIDPAT   57 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~----------~~~~~w~~~--~~~~~~----~~~~~~~-----~~~~---~~~~~~~~l~i~~~~   57 (83)
                      +|+++.|.|.....+          ...+.|++.  +.....    .......     +...   .......+|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            589999999975433          356899984  221110    0000000     0001   112234679999999


Q ss_pred             CCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826         58 QKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus        58 ~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      .+|+|.|.|.+.......+..+.|+
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~  105 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLE  105 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEE
Confidence            9999999999987655555555543

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.07  E-value=7.5e-09  Score=45.48  Aligned_cols=69  Identities=22%  Similarity=0.331  Sum_probs=45.1

Q ss_pred             EEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          6 ITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         6 ~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      +.+.|.+.+ .|...+.|+++|..+............+......+.|.+..-...+...|.|.+.+..-.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            578999877 677789999999987643322211111122344567777655566678899999876543

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=99.07  E-value=5.7e-09  Score=45.71  Aligned_cols=68  Identities=24%  Similarity=0.343  Sum_probs=43.5

Q ss_pred             EEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          6 ITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         6 ~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      +.+.|.+.+ .|.+.+.|++++..+.... ..............+.|.+......+...|.|.+.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            578999866 5888999999998876432 1111111112234456666555555678999999986543

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.06  E-value=1.1e-08  Score=45.98  Aligned_cols=65  Identities=14%  Similarity=0.171  Sum_probs=45.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEec--------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELT--------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      +|+.+.|.|.+.......+.|++.+..+.        ...++....   . .....+|.|..++.+|.|.|.|.+..
T Consensus        11 ~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~---~-~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881          11 EGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVN---F-SSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             CCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEe---C-CCCEEEEEECcCCcccCEEEEEEEEc
Confidence            69999999999887777788887664321        122232221   0 12245799999999999999998875

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.05  E-value=3.9e-09  Score=46.52  Aligned_cols=58  Identities=16%  Similarity=0.316  Sum_probs=43.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      .|+.+.|.|..... .+.+.|+.++..+....+....         ...|.|..++.+|+|.|.|.+.
T Consensus        10 ~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~---------~~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872          10 PGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVG---------TDGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             cCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEe---------CCCCEEEECCHhhCEEEEEEEe
Confidence            58889999997554 5699999999887653322221         1247788999999999999986

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.05  E-value=1.1e-08  Score=44.93  Aligned_cols=68  Identities=25%  Similarity=0.318  Sum_probs=45.4

Q ss_pred             EEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecC-CCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          6 ITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLG-NNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         6 ~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      +.+.|.+.+ .|.+.|.|++++..+..... ........ .....+.|.+......+...|.|.+.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            678999877 58889999999988765332 22221111 2223456777666666778999999987543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=99.04  E-value=1.3e-08  Score=47.33  Aligned_cols=72  Identities=19%  Similarity=0.290  Sum_probs=43.9

Q ss_pred             CCceEEEEeEeCcc----CCCeEEEEeC---------------CEEecc-cceEE-EEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGF----PRPHITWTKD---------------DIELTF-HKYFQ-VHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~----~~~~~~w~~~---------------~~~~~~-~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.|.|.....    +...+.|...               +..... ...++ ...+.........+|.|.+++.+|
T Consensus        12 ~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~sD   91 (116)
T cd05879          12 VGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDYTD   91 (116)
T ss_pred             cCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCccc
Confidence            58999999997553    3457899331               111110 00000 001111122345789999999999


Q ss_pred             CeEEEEEeeCCCc
Q psy11826         61 AGYYECVADNPFA   73 (83)
Q Consensus        61 ~g~y~C~~~~~~g   73 (83)
                      .|.|.|.+.|.-+
T Consensus        92 ~G~Y~C~v~n~p~  104 (116)
T cd05879          92 NGTFTCDVKNPPD  104 (116)
T ss_pred             CEEEEEEEEcCCC
Confidence            9999999998654

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=99.04  E-value=1.8e-08  Score=46.20  Aligned_cols=68  Identities=18%  Similarity=0.215  Sum_probs=45.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEE--e---c---------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIE--L---T---------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~--~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.+.|.|...+.+.+.+.|++....  .   .         ...++.+.   .........|.|.+++.+|+|.|.|.
T Consensus        12 ~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~~~~L~I~~~~~~DsG~Y~C~   88 (109)
T cd04983          12 EGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSAT---LDKSRKSSSLHISAAQLSDSAVYFCA   88 (109)
T ss_pred             CCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEE---EcccCCEEEEEECCCCHHHCEEEEEE
Confidence            689999999988777888999974311  0   0         00111111   11112356899999999999999999


Q ss_pred             eeCCC
Q psy11826         68 ADNPF   72 (83)
Q Consensus        68 ~~~~~   72 (83)
                      +.+..
T Consensus        89 ~~~~~   93 (109)
T cd04983          89 LSESG   93 (109)
T ss_pred             EecCC
Confidence            98654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=99.02  E-value=2.1e-08  Score=46.27  Aligned_cols=80  Identities=18%  Similarity=0.222  Sum_probs=48.4

Q ss_pred             CCceEEEEeEeCccC-------CCeEEEEeCC-----EEec----ccceEEE-------EEEec-CCCeEEEEEEEccCC
Q psy11826          2 LGRKITFFCMAEGFP-------RPHITWTKDD-----IELT----FHKYFQV-------HEWFL-GNNTIKSKMEIDPAT   57 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~-------~~~~~w~~~~-----~~~~----~~~~~~~-------~~~~~-~~~~~~~~l~i~~~~   57 (83)
                      +|..+.|.|.....|       .+.|.|.+..     ....    .......       ..... ......++|.|.+++
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~   80 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR   80 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence            478899999954322       4689998741     1111    0000000       01100 112346789999999


Q ss_pred             CCCCeEEEEEeeCCCcceeeEEEE
Q psy11826         58 QKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus        58 ~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .+|+|.|.|.+..........+.|
T Consensus        81 ~~D~G~Y~C~v~~g~~~~~~~v~L  104 (110)
T cd05902          81 YSDSGTYRCEVVLGINDEQDTVPL  104 (110)
T ss_pred             HHHCEEEEEEEEECCcccEEEEEE
Confidence            999999999998866555555544

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=99.01  E-value=2.7e-08  Score=44.26  Aligned_cols=80  Identities=18%  Similarity=0.132  Sum_probs=49.4

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCCEEecccc-------eEEEE-EEecCC--CeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDDIELTFHK-------YFQVH-EWFLGN--NTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~-------~~~~~-~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      |+.++|.|.........+.|++.........       ..... ......  .....+|.|.+++.+|+|.|.|.+....
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            7889999997776666899998653322110       00000 000000  0012579999999999999999998876


Q ss_pred             c-ceeeEEEEe
Q psy11826         73 A-IDRRGFRTD   82 (83)
Q Consensus        73 g-~~~~~~~~~   82 (83)
                      + .....+.|.
T Consensus        81 ~~~~~~~~~l~   91 (92)
T cd05741          81 GVTENAKFFLR   91 (92)
T ss_pred             CcEEEEEEEEE
Confidence            4 345555553

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.98  E-value=3.6e-08  Score=43.18  Aligned_cols=66  Identities=26%  Similarity=0.361  Sum_probs=44.8

Q ss_pred             EEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          6 ITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         6 ~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      +.+.|.+.+ .|.+.|.|++++..+......  ...........++|.|..-...|...|.|.+.|..-
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~--~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l   68 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTV--EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV   68 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccc--eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence            578999765 788899999999888764221  111122344567788865555556779999988653

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.98  E-value=2.2e-08  Score=45.02  Aligned_cols=79  Identities=16%  Similarity=0.211  Sum_probs=46.7

Q ss_pred             ceEEEEeEeCccC---CCeEEEEeCCEE----ec---cc------ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          4 RKITFFCMAEGFP---RPHITWTKDDIE----LT---FH------KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         4 ~~~~~~C~~~~~~---~~~~~w~~~~~~----~~---~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +.+.|.|.....+   ...+.|++....    +.   ..      ......-..........+|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999876543   346899985421    00   00      00000000001111356899999999999999999


Q ss_pred             eeC-CCcceeeEEEEe
Q psy11826         68 ADN-PFAIDRRGFRTD   82 (83)
Q Consensus        68 ~~~-~~g~~~~~~~~~   82 (83)
                      +.. ..|.......|.
T Consensus        81 v~~~~~g~~~~~~~l~   96 (98)
T cd05718          81 FATFPQGNRQKVTTLT   96 (98)
T ss_pred             EEeCCCCcEEEEEEEE
Confidence            864 567766666553

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.97  E-value=1.4e-08  Score=45.85  Aligned_cols=80  Identities=16%  Similarity=0.203  Sum_probs=50.6

Q ss_pred             CCCceEEEEeEeCc-cCCCeEEEEeCCEEecccc------eEEEE------EEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          1 MLGRKITFFCMAEG-FPRPHITWTKDDIELTFHK------YFQVH------EWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         1 ~~g~~~~~~C~~~~-~~~~~~~w~~~~~~~~~~~------~~~~~------~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .+|++++|.|.... .....+.|++....+....      .....      +...  .....+|.|.+++.+|+|.|.|.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~--~~~~~sL~I~~~~~~DsG~Y~c~   79 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNF--SQNDYSLQISNLKMEDAGSYRAE   79 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEe--cCCceeEEECCCchHHCEEEEEE
Confidence            47999999998654 4455789998653322110      00000      0000  11135799999999999999999


Q ss_pred             eeCCCcce-eeEEEEe
Q psy11826         68 ADNPFAID-RRGFRTD   82 (83)
Q Consensus        68 ~~~~~g~~-~~~~~~~   82 (83)
                      .....+.. ...+.|.
T Consensus        80 v~~~~~~~~~~~f~L~   95 (97)
T cd05775          80 INTKNGVTITKEFTLH   95 (97)
T ss_pred             EEcCCCCeEEEEEEEE
Confidence            98776653 5566654

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.94  E-value=9.5e-09  Score=45.84  Aligned_cols=61  Identities=20%  Similarity=0.341  Sum_probs=44.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|++++|.|... .+.....|+++|........        ........+.|..++.+|+|.|+|...+.
T Consensus        15 ~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~--------~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          15 LGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKP--------PEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCCcEEEEEecC-CCCCEEEEEECCCCcccccc--------CCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            589999999864 56667889988864332100        01112457999999999999999999875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.94  E-value=4.2e-08  Score=44.90  Aligned_cols=81  Identities=14%  Similarity=0.140  Sum_probs=47.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecc--------c-ceEEEEEEecCCC--eEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTF--------H-KYFQVHEWFLGNN--TIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~--------~-~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      +|+++.|.|.........+.|++.......        . ......+...+..  ..+.+|.|.+++.+|.|.|.|.+.+
T Consensus        12 ~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~   91 (105)
T cd05774          12 EGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQTIT   91 (105)
T ss_pred             CCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEEEEe
Confidence            689999998754444448899995321111        0 0000000000110  1124799999999999999999988


Q ss_pred             CC-cceeeEEEEe
Q psy11826         71 PF-AIDRRGFRTD   82 (83)
Q Consensus        71 ~~-g~~~~~~~~~   82 (83)
                      .. ........+.
T Consensus        92 ~~~~~~~~~v~l~  104 (105)
T cd05774          92 TNFQVEQATVHLQ  104 (105)
T ss_pred             CCccEEEEEEEEE
Confidence            76 3445455443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.93  E-value=3.1e-08  Score=45.02  Aligned_cols=69  Identities=17%  Similarity=0.301  Sum_probs=45.3

Q ss_pred             CCceEEEEeEeCcc-CCCeEEEEeCCE--E---ecc------------cceEEEEEEecCCCeEEEEEEEccCCCCCCeE
Q psy11826          2 LGRKITFFCMAEGF-PRPHITWTKDDI--E---LTF------------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~~~~w~~~~~--~---~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   63 (83)
                      .|+.+.|.|..... +...+.|++...  .   +..            ..+.....   .......+|.|.+++.+|.|.
T Consensus         5 ~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           5 EGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTR---DSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             CCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEE---eccCCEEEEEECCCCHHHCEE
Confidence            58999999998765 667899997432  1   100            01111111   111134579999999999999


Q ss_pred             EEEEeeCCCc
Q psy11826         64 YECVADNPFA   73 (83)
Q Consensus        64 y~C~~~~~~g   73 (83)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.91  E-value=9.2e-08  Score=44.49  Aligned_cols=36  Identities=19%  Similarity=0.248  Sum_probs=29.5

Q ss_pred             EEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826         47 IKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus        47 ~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      ..++|.|.+++.+|+|.|.|.+..........+.|+
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~  112 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLD  112 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEE
Confidence            457899999999999999999988777666655554

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.90  E-value=8.2e-08  Score=43.27  Aligned_cols=79  Identities=16%  Similarity=0.211  Sum_probs=46.9

Q ss_pred             CceEEEEeEeCccCC-CeEEEEeCCE----Eec---c------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          3 GRKITFFCMAEGFPR-PHITWTKDDI----ELT---F------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         3 g~~~~~~C~~~~~~~-~~~~w~~~~~----~~~---~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      |++++|.|....... -.+.|++...    .+.   .      ...+.-...........++|.|.+++.+|+|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            788999998554332 2589987421    110   0      0011101111111223567999999999999999998


Q ss_pred             e-CCCcceeeEEEE
Q psy11826         69 D-NPFAIDRRGFRT   81 (83)
Q Consensus        69 ~-~~~g~~~~~~~~   81 (83)
                      . .+.|.......|
T Consensus        81 ~~~p~g~~~~~~~L   94 (97)
T cd05846          81 NTFPDGSKSGTMCL   94 (97)
T ss_pred             EeCCCCCeeeEEEE
Confidence            6 466666555554

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd00096 Ig Immunoglobulin domain

Probab=98.85  E-value=2e-07  Score=38.57  Aligned_cols=66  Identities=33%  Similarity=0.508  Sum_probs=45.4

Q ss_pred             EEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          6 ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         6 ~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      +.+.|.+.+.+.+.+.|++.+......... ..............|.+..++..|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT-RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccE-EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            367899888777889999987665443211 111111223345679999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.85  E-value=6.1e-08  Score=44.59  Aligned_cols=70  Identities=17%  Similarity=0.322  Sum_probs=44.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCE--Eecc-----cceEEEE------EEec-CCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDI--ELTF-----HKYFQVH------EWFL-GNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~--~~~~-----~~~~~~~------~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|++++|.|...+ +.+.+.|++...  .+..     .......      .... ........|.|.+++.+|+|.|.|.
T Consensus        12 ~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca   90 (110)
T cd05899          12 RGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYLCA   90 (110)
T ss_pred             CCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEEEEE
Confidence            6899999999877 677899998431  1110     0000000      0000 1111345799999999999999999


Q ss_pred             eeCCC
Q psy11826         68 ADNPF   72 (83)
Q Consensus        68 ~~~~~   72 (83)
                      +.+..
T Consensus        91 ~~~~~   95 (110)
T cd05899          91 SSLGG   95 (110)
T ss_pred             eeCCC
Confidence            87643

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.83  E-value=1.1e-07  Score=42.86  Aligned_cols=70  Identities=14%  Similarity=0.225  Sum_probs=42.7

Q ss_pred             CCceEEEEeEeCcc--CCCeEEEEeCCE--Eecccce-------EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGF--PRPHITWTKDDI--ELTFHKY-------FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~--~~~~~~w~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      +|+++.|.|.....  ....+.|++...  .......       ................|.|.+++.+|+|.|.|.+.+
T Consensus         5 ~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~   84 (98)
T cd04984           5 PGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQVWD   84 (98)
T ss_pred             CCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEEEcc
Confidence            68999999997654  456799987321  1110000       000001111111345799999999999999999875


Q ss_pred             C
Q psy11826         71 P   71 (83)
Q Consensus        71 ~   71 (83)
                      .
T Consensus        85 ~   85 (98)
T cd04984          85 S   85 (98)
T ss_pred             C
Confidence            3

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.80  E-value=2.2e-07  Score=40.00  Aligned_cols=67  Identities=21%  Similarity=0.355  Sum_probs=42.8

Q ss_pred             EEEEeEeCcc-CC-CeEEEEeCCEEecccc-eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          6 ITFFCMAEGF-PR-PHITWTKDDIELTFHK-YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         6 ~~~~C~~~~~-~~-~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      +.|.|.+.++ |. ..+.|+++|..+.... ........+......+.|.+......+...|.|.+....
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            5789999886 44 4789999998643221 111112122334456678776666667789999987643

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.80  E-value=2.2e-07  Score=41.15  Aligned_cols=73  Identities=25%  Similarity=0.420  Sum_probs=43.9

Q ss_pred             CceEEEEeEe-CccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          3 GRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         3 g~~~~~~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      |+.+.+.|.+ .++|.|.+.|+.++..+...................+.|.+..-...+...+.|.+.+.....
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~   87 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ   87 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence            4588999975 468999999999887772211111111111123345677776544445677899998765443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.78  E-value=5e-08  Score=44.59  Aligned_cols=70  Identities=16%  Similarity=0.249  Sum_probs=42.8

Q ss_pred             CCceEEEEeEeCccC-CCeEEEEeCC--EE---ecc-cceEE---EEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFP-RPHITWTKDD--IE---LTF-HKYFQ---VHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~-~~~~~w~~~~--~~---~~~-~~~~~---~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.++|.|...+.. ...+.|++..  ..   +.. .....   ..............|.|.+++.+|+|.|.|.+.+.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          14 PGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQYGT   93 (106)
T ss_pred             CCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence            589999999987655 5679998732  11   110 00000   00011111122456999999999999999998754

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.77  E-value=2.2e-07  Score=43.10  Aligned_cols=66  Identities=20%  Similarity=0.383  Sum_probs=43.1

Q ss_pred             CCceEEEEeEeCc--cCCCeEEEEeC--CEEe---c---c-----------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEG--FPRPHITWTKD--DIEL---T---F-----------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~--~~~~~~~w~~~--~~~~---~---~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      +|+.+.|.|...+  .+.+.+.|++.  +...   .   .           ..++....   ........|.|.+++.+|
T Consensus        12 ~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~~~~~D   88 (116)
T cd04982          12 ESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARK---DVGKSTSTLTIQNLEKED   88 (116)
T ss_pred             CCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEE---ECCCCEEEEEEEECCHHH
Confidence            5899999999876  67788999983  2111   0   0           00111100   011124579999999999


Q ss_pred             CeEEEEEeeC
Q psy11826         61 AGYYECVADN   70 (83)
Q Consensus        61 ~g~y~C~~~~   70 (83)
                      +|.|.|.+..
T Consensus        89 sg~Y~C~~~~   98 (116)
T cd04982          89 SATYYCAYWE   98 (116)
T ss_pred             CEEEEEEEec
Confidence            9999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.77  E-value=4.6e-07  Score=41.09  Aligned_cols=36  Identities=19%  Similarity=0.250  Sum_probs=28.4

Q ss_pred             EEEEEEEccCCCCCCeEEEEEeeC-CCcceeeEEEEe
Q psy11826         47 IKSKMEIDPATQKDAGYYECVADN-PFAIDRRGFRTD   82 (83)
Q Consensus        47 ~~~~l~i~~~~~~~~g~y~C~~~~-~~g~~~~~~~~~   82 (83)
                      ...+|.|.+++.+|+|.|.|.+.+ ..|..+....|.
T Consensus        62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~   98 (100)
T cd05888          62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLT   98 (100)
T ss_pred             CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEE
Confidence            356799999999999999999986 666666555553

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.75  E-value=2.4e-07  Score=40.86  Aligned_cols=60  Identities=12%  Similarity=0.218  Sum_probs=42.0

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      +.|+.+++.|.....+  .+.++|...+........           ....+|.+..+...|.|.+.|.+...
T Consensus        12 L~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~-----------~~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694          12 LSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILN-----------QDKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             ecCCcEEEEEecCCCCCCCccEEEeCCCCccceecc-----------CCccEEEeceeCcccCCEEEEEEEEC
Confidence            4699999999975544  448999875543221110           00236888999999999999999644

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.72  E-value=1.2e-06  Score=39.74  Aligned_cols=36  Identities=14%  Similarity=0.256  Sum_probs=29.6

Q ss_pred             EEEEEEEccCCCCCCeEEEEEeeC-CCcceeeEEEEe
Q psy11826         47 IKSKMEIDPATQKDAGYYECVADN-PFAIDRRGFRTD   82 (83)
Q Consensus        47 ~~~~l~i~~~~~~~~g~y~C~~~~-~~g~~~~~~~~~   82 (83)
                      ..++|.|.+++.+|.|.|.|.+.+ ..|..+....|.
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~   97 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLT   97 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEE
Confidence            347899999999999999999998 677766666553

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>KOG4222|consensus

Probab=98.72  E-value=7.5e-08  Score=58.17  Aligned_cols=70  Identities=24%  Similarity=0.450  Sum_probs=52.6

Q ss_pred             CCceEEEEeE-eCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826          2 LGRKITFFCM-AEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         2 ~g~~~~~~C~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~   77 (83)
                      .|+.+.++|. ..+.|.|.+.|.++|..+.....-.+...  .    ...|.|.++.++|.|.|.|.++|..|....
T Consensus       145 ~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~li--s----gG~LlIsnvrksD~GtY~CVatNmvG~ReS  215 (1281)
T KOG4222|consen  145 VGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALI--S----GGNLLISNVRKSDEGTYACVATNMVGERES  215 (1281)
T ss_pred             ccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEe--c----CCcEEEeccccCCCceeeeeeccccccccc
Confidence            4788999998 46889999999999988773221111110  1    236999999999999999999999887543

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.69  E-value=8.1e-07  Score=40.08  Aligned_cols=78  Identities=17%  Similarity=0.279  Sum_probs=47.6

Q ss_pred             ceEEEEeEeCcc-CCCeEEEEeCCE----Eecc-c--------ceEE-EEEEecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          4 RKITFFCMAEGF-PRPHITWTKDDI----ELTF-H--------KYFQ-VHEWFLGNNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         4 ~~~~~~C~~~~~-~~~~~~w~~~~~----~~~~-~--------~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      +++.|.|..... ....|.|.+...    .+.. .        ..+. .... .......++|.|.+++.+|.|.|.|.+
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~-~~~~~~d~sl~i~nv~~~D~G~Y~C~v   79 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSF-KNYSLLDATIMLENVGFSDIGVYICKA   79 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEE-cCCCCCccEEEEeCCCccccEEEEEEE
Confidence            468899997542 234689987421    1110 0        0000 0011 112233568999999999999999997


Q ss_pred             e-CCCcceeeEEEEe
Q psy11826         69 D-NPFAIDRRGFRTD   82 (83)
Q Consensus        69 ~-~~~g~~~~~~~~~   82 (83)
                      . .+.|+......|.
T Consensus        80 ~tfP~G~~~~~~~l~   94 (96)
T cd05887          80 VTFPLGNTQSSTTVT   94 (96)
T ss_pred             EeCCCCCeeEEEEEE
Confidence            4 6788877776654

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.69  E-value=6.9e-07  Score=40.31  Aligned_cols=35  Identities=20%  Similarity=0.292  Sum_probs=28.9

Q ss_pred             EEEEEEEccCCCCCCeEEEEEee-CCCcceeeEEEE
Q psy11826         47 IKSKMEIDPATQKDAGYYECVAD-NPFAIDRRGFRT   81 (83)
Q Consensus        47 ~~~~l~i~~~~~~~~g~y~C~~~-~~~g~~~~~~~~   81 (83)
                      ..++|.|.+++.+|.|.|.|.+. .+.|...+.+.+
T Consensus        58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~   93 (96)
T cd05889          58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV   93 (96)
T ss_pred             CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence            35789999999999999999996 467887776655

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.68  E-value=4.8e-07  Score=42.05  Aligned_cols=26  Identities=27%  Similarity=0.429  Sum_probs=22.8

Q ss_pred             EEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826         48 KSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus        48 ~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .++|.|..++.+|+|.|.|.+.+..+
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          78 DASILIWQLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             ceEEEEeeCChhhCEEEEEEEEeCCC
Confidence            46799999999999999999997544

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.66  E-value=7.6e-07  Score=40.18  Aligned_cols=73  Identities=12%  Similarity=0.258  Sum_probs=43.8

Q ss_pred             CCceEEEEeEeCcc-CCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGF-PRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+++.|.+.++ .++  .+.|.+++...............+..+...+.|.+..-...+...|.|.+......
T Consensus        13 ~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~   88 (96)
T cd07696          13 LTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLP   88 (96)
T ss_pred             cCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCC
Confidence            36789999999998 444  47999987433211101111122233445566777655444566899999876543

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG4221|consensus

Probab=98.65  E-value=1.7e-07  Score=57.02  Aligned_cols=64  Identities=28%  Similarity=0.503  Sum_probs=52.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+.|-|.+.|.+++..++..+++..-.        ...|.|..+...|.|.|.|.+.+..-
T Consensus       154 ~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lp--------sG~L~I~~~qp~d~g~yrc~vt~g~~  217 (1381)
T KOG4221|consen  154 YGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLP--------SGALEISGLQPSDTGEYRCVVTGGAS  217 (1381)
T ss_pred             cCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcC--------CCcEEecccccCCCceEEEEEecCCc
Confidence            58889999999999999999999998777665433222        24799999999999999999987543

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.65  E-value=8.4e-07  Score=39.72  Aligned_cols=68  Identities=21%  Similarity=0.322  Sum_probs=40.4

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccce-EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      ++.+.+.|.+.|+.++  .+.|.+++........ .......+......+.|.+..   .+...|.|.+.+...
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~---~~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP---EDKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC---CCCCEEEEEEEeCCC
Confidence            5678999999996444  7899999863332211 111111112223344555543   477899999976543

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.62  E-value=1.7e-06  Score=40.21  Aligned_cols=26  Identities=27%  Similarity=0.455  Sum_probs=22.6

Q ss_pred             EEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826         48 KSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus        48 ~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .++|.|.+++.+|.|.|.|.+.+.-.
T Consensus        79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          79 DASIVIHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eeEEEEeeCCcccCEEEEEEEEeCCC
Confidence            46799999999999999999987544

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.62  E-value=2.4e-06  Score=40.86  Aligned_cols=72  Identities=15%  Similarity=0.336  Sum_probs=44.4

Q ss_pred             CCceEEEEeEeCccCC--CeEEEEeCCEEecc-----cceE--EEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          2 LGRKITFFCMAEGFPR--PHITWTKDDIELTF-----HKYF--QVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .|+.+.+.|.+.+.++  +.+.|++++.....     ....  ......+......+.|.+......+...|.|.+.+..
T Consensus        52 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          52 IEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             cCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            3677899999998644  37899998754221     1111  1111222334455678877666556779999997754


Q ss_pred             c
Q psy11826         73 A   73 (83)
Q Consensus        73 g   73 (83)
                      .
T Consensus       132 l  132 (139)
T cd05771         132 L  132 (139)
T ss_pred             C
Confidence            3

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.62  E-value=1.6e-06  Score=39.09  Aligned_cols=68  Identities=16%  Similarity=0.228  Sum_probs=43.5

Q ss_pred             CCceEEEEeEeCc-cCCCeEEEEeCCEE-----ec--------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEG-FPRPHITWTKDDIE-----LT--------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~~~~w~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+++.+.|.... .....+.|++....     +.        ...+..+.   .........|.|.+++.+|+|.|.|.
T Consensus         6 ~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~---~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           6 LGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLT---DDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             eCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEE---ecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            5899999999764 35567899974321     10        00111111   11122346799999999999999998


Q ss_pred             eeCCC
Q psy11826         68 ADNPF   72 (83)
Q Consensus        68 ~~~~~   72 (83)
                      +....
T Consensus        83 ~~~~~   87 (98)
T cd05716          83 VGDDG   87 (98)
T ss_pred             cccCC
Confidence            87643

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.60  E-value=7.5e-07  Score=40.05  Aligned_cols=72  Identities=14%  Similarity=0.219  Sum_probs=44.6

Q ss_pred             ceEEEEeEeCccCC--CeEEEEeCCEEecccc-eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          4 RKITFFCMAEGFPR--PHITWTKDDIELTFHK-YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         4 ~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      +.+.|.|.+.++.+  ..+.|.++|..+.... ........++.+...+.|.+..-...+...|.|.+.......
T Consensus        15 ~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~   89 (94)
T cd05847          15 ETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF   89 (94)
T ss_pred             CCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence            45789999998644  3579999998763321 111111112233445567776555556788999998765543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.60  E-value=1.2e-06  Score=43.65  Aligned_cols=72  Identities=19%  Similarity=0.248  Sum_probs=45.2

Q ss_pred             CCceEEEEeEeC-ccCCCeEEEEeCCEEecc--cceEEEE-----EEe-cCCCeEEEEEEEccCCCCCCeEEEEEeeC-C
Q psy11826          2 LGRKITFFCMAE-GFPRPHITWTKDDIELTF--HKYFQVH-----EWF-LGNNTIKSKMEIDPATQKDAGYYECVADN-P   71 (83)
Q Consensus         2 ~g~~~~~~C~~~-~~~~~~~~w~~~~~~~~~--~~~~~~~-----~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~~-~   71 (83)
                      +|+.+.|.|... +...+.+.|++....+..  .....+.     +.. .......+.|.|.+++.+|+|.|.|...- +
T Consensus        29 ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp  108 (189)
T PHA02987         29 EHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLL  108 (189)
T ss_pred             CCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEecC
Confidence            578899999974 666788999985432211  0000000     000 11122346899999999999999999863 4


Q ss_pred             Cc
Q psy11826         72 FA   73 (83)
Q Consensus        72 ~g   73 (83)
                      .|
T Consensus       109 ~G  110 (189)
T PHA02987        109 SK  110 (189)
T ss_pred             CC
Confidence            44

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.60  E-value=3.8e-06  Score=38.88  Aligned_cols=69  Identities=19%  Similarity=0.367  Sum_probs=42.6

Q ss_pred             CCceEEEEeEeCccCC--CeEEEEeCCEEecccceEEEEEEecC-CCeEEEEEEEccCCCCCC-eEEEEEeeCCC
Q psy11826          2 LGRKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQVHEWFLG-NNTIKSKMEIDPATQKDA-GYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~-g~y~C~~~~~~   72 (83)
                      .|+.++|.|.+.++.+  ..+.|+++|..+..... ......+. .+...+.|.+... ..|. ..|.|.+....
T Consensus        20 ~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~~-~~d~~~~ytC~V~H~~   92 (111)
T cd05772          20 PGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKLT-EDDVHSQVTCEVQHRT   92 (111)
T ss_pred             CCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEECc-cccccCceEEEEEeCC
Confidence            3667899999988644  47899999988764221 22221121 2334556766643 3443 45999998754

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.59  E-value=2.9e-06  Score=38.55  Aligned_cols=69  Identities=14%  Similarity=0.296  Sum_probs=44.2

Q ss_pred             CCceEEEEeEeCc-cCCCe--EEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCC-eEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEG-FPRPH--ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA-GYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~-g~y~C~~~~~~g~   74 (83)
                      +|+.+++.|.+.+ .|.+.  |.|++++..+.......   .........+++.+. +.+.|. -.|+|.+.+....
T Consensus        15 eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~---~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          15 VGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD---NTKSPVNAPATITIT-VDREDHGANFSCETELDLRP   87 (100)
T ss_pred             CCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc---ccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence            6899999999876 67776  69999998876432110   000112224566665 445565 5899999986654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.58  E-value=3e-06  Score=37.13  Aligned_cols=68  Identities=21%  Similarity=0.334  Sum_probs=44.6

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEE-EecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHE-WFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      ++.+.+.|.+.++.+.  .+.|.+++..+.......... ..++.+...+.|.+.   ..+...|.|.+.....
T Consensus         8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            6789999999885443  589999999887544322222 122334455567666   4556689999976543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.57  E-value=3.3e-06  Score=37.90  Aligned_cols=67  Identities=15%  Similarity=0.195  Sum_probs=41.8

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      |+...|.|.+.++.++  .+.|.++|..+.........+..+..+...+.|.+.   .++...|.|.+....
T Consensus        15 g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~   83 (93)
T cd05770          15 GKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNS   83 (93)
T ss_pred             CCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEECC
Confidence            4456899999996554  469999999876222222222222333344555554   456778999998743

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.57  E-value=6.4e-07  Score=40.84  Aligned_cols=71  Identities=17%  Similarity=0.367  Sum_probs=44.0

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEe----cCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWF----LGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      ++.+++.|.+.|+.++  .+.|.++|..+............    +..+...+.|.+..-...+...|.|.+.....
T Consensus        16 ~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l   92 (102)
T cd05768          16 QETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL   92 (102)
T ss_pred             CCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence            5679999999996554  46999999876543211111111    12233455677755444556779999987543

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.54  E-value=2.7e-06  Score=38.21  Aligned_cols=62  Identities=16%  Similarity=0.338  Sum_probs=41.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      .|++++|.|.... ....+.|++++..........     .......+.+.|..++.+|+|.|.|...
T Consensus        14 ~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~-----~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          14 SGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYE-----KHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CCCeEEEEEecCC-CCCEEEEEECCCCCCceeccc-----ccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            5899999998654 445789999876432210000     0012224578999999999999999864

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.54  E-value=1.7e-06  Score=39.29  Aligned_cols=70  Identities=13%  Similarity=0.231  Sum_probs=44.9

Q ss_pred             CceEEEEeEeCccCC--CeEEEEeCCEEecccceE-EEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGFPR--PHITWTKDDIELTFHKYF-QVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      ++.+.+.|.+.++.+  ..+.|+++|..+...... ......+..+...+.|.+......+...|.|.+....
T Consensus        17 ~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          17 SGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             CCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            566899999988543  468999999887533211 1111113334455667776655556788999998754

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>KOG4194|consensus

Probab=98.54  E-value=2.1e-07  Score=53.71  Aligned_cols=72  Identities=25%  Similarity=0.524  Sum_probs=54.1

Q ss_pred             CCceEEEEeEeCccCC-CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPR-PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+++.+.|.+.+.|+ |.+.|++.+.++....+...   .++    .--+.+.....+|.|.|+|...+..|.....+.
T Consensus       720 ~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f---~d~----dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~  792 (873)
T KOG4194|consen  720 VGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTF---PDG----DQLLVVKENLVEDAGIYTCEMSNTLGTERIHIC  792 (873)
T ss_pred             ecceEEEEEecCCCCCCccccccCCCCceEEeecccC---CCC----CeEEEEEehhhhhcceEEEEEEeeccceeeEEE
Confidence            5888999999999888 99999998887765432111   111    235777888899999999999998887655443

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.52  E-value=4e-06  Score=38.44  Aligned_cols=69  Identities=14%  Similarity=0.290  Sum_probs=40.9

Q ss_pred             CCceEEEEeEeCcc-CCCeEEEEeCCEE-----ec-----cc-ceEE--------EEEEecCCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGF-PRPHITWTKDDIE-----LT-----FH-KYFQ--------VHEWFLGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~~~~w~~~~~~-----~~-----~~-~~~~--------~~~~~~~~~~~~~~l~i~~~~~~~~   61 (83)
                      .|++++|.|..... ....+.|++....     +.     .. ....        ..............|.|.+++.+|+
T Consensus         5 ~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Ds   84 (107)
T cd07700           5 TNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKPEDS   84 (107)
T ss_pred             CCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCHHHC
Confidence            68999999997653 3457999973221     00     00 0000        0000001112234699999999999


Q ss_pred             eEEEEEeeC
Q psy11826         62 GYYECVADN   70 (83)
Q Consensus        62 g~y~C~~~~   70 (83)
                      |.|.|...+
T Consensus        85 g~YyCa~~~   93 (107)
T cd07700          85 GTYFCMTVG   93 (107)
T ss_pred             EEEEEeEcC
Confidence            999998763

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.51  E-value=1.5e-06  Score=39.70  Aligned_cols=69  Identities=13%  Similarity=0.242  Sum_probs=41.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCE----Ee---c---ccceEE-------EEEEecCCCeEEEEEEEccCCCCCCeEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDI----EL---T---FHKYFQ-------VHEWFLGNNTIKSKMEIDPATQKDAGYY   64 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~----~~---~---~~~~~~-------~~~~~~~~~~~~~~l~i~~~~~~~~g~y   64 (83)
                      .|+.++|.|.........+.|++...    .+   .   ......       ..............|.|..++.+|+|.|
T Consensus         5 ~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsgtY   84 (104)
T cd05720           5 LGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEGYY   84 (104)
T ss_pred             CCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCEEE
Confidence            68999999997655456789997332    11   0   000000       0001111111244699999999999999


Q ss_pred             EEEeeC
Q psy11826         65 ECVADN   70 (83)
Q Consensus        65 ~C~~~~   70 (83)
                      .|.+.+
T Consensus        85 ~Ca~~~   90 (104)
T cd05720          85 FCSVAS   90 (104)
T ss_pred             EEEEcc
Confidence            998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.48  E-value=2.3e-06  Score=39.10  Aligned_cols=70  Identities=13%  Similarity=0.254  Sum_probs=43.2

Q ss_pred             CCceEEEEeEeC-ccCCCeEEEEeCCE-----Eec-cc-ceEEEEEE--e-------cCCCeEEEEEEEccCCCCCCeEE
Q psy11826          2 LGRKITFFCMAE-GFPRPHITWTKDDI-----ELT-FH-KYFQVHEW--F-------LGNNTIKSKMEIDPATQKDAGYY   64 (83)
Q Consensus         2 ~g~~~~~~C~~~-~~~~~~~~w~~~~~-----~~~-~~-~~~~~~~~--~-------~~~~~~~~~l~i~~~~~~~~g~y   64 (83)
                      +|+.+.|.|... ......+.|++...     .+. .. ........  .       ........+|.|.+++.+|+|.|
T Consensus        15 ~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y   94 (114)
T PF07686_consen   15 EGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSDSGTY   94 (114)
T ss_dssp             TTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGGEEEE
T ss_pred             cCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCcCEEE
Confidence            689999999987 44556899997221     111 00 00000000  0       01112245799999999999999


Q ss_pred             EEEeeCC
Q psy11826         65 ECVADNP   71 (83)
Q Consensus        65 ~C~~~~~   71 (83)
                      .|.+...
T Consensus        95 ~C~v~~~  101 (114)
T PF07686_consen   95 FCQVSTS  101 (114)
T ss_dssp             EEEEEES
T ss_pred             EEEEEEC
Confidence            9999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.48  E-value=5.7e-06  Score=37.20  Aligned_cols=69  Identities=20%  Similarity=0.231  Sum_probs=42.7

Q ss_pred             CCceEEEEeEeCccCCC--eEEEEeCCEEecccce-EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRP--HITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+..++.|.+.++.++  .+.|+++|..+..... ....+..+......+.|.+.   .++...|.|.+.....
T Consensus        13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~---~~~~~~ysC~V~H~~l   84 (94)
T cd05766          13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT---PSRGDTYTCVVEHSSL   84 (94)
T ss_pred             CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEeCCC
Confidence            36778999999986444  5799999987665311 11122212223344556554   3456789999987543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.45  E-value=6.3e-06  Score=37.09  Aligned_cols=67  Identities=19%  Similarity=0.329  Sum_probs=42.0

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccce-EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      ++..++.|.+.|+.++  .+.|.++|..+..... .......+..+...+.|.+..   ++...|.|.+....
T Consensus        15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~   84 (94)
T cd05767          15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWG   84 (94)
T ss_pred             CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCC
Confidence            3447899999996543  5799999988754321 122222233344455676654   45568999997754

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.45  E-value=5.2e-06  Score=38.52  Aligned_cols=66  Identities=21%  Similarity=0.290  Sum_probs=41.8

Q ss_pred             CCceEEEEeEeCcc-CCCeEEEEeCC--EEec---c---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEE
Q psy11826          2 LGRKITFFCMAEGF-PRPHITWTKDD--IELT---F---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC   66 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~~~~w~~~~--~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C   66 (83)
                      .|+.+.|.|..... ....+.|++..  ..+.   .         ..++....   ........|.|.+++.+|+|.|.|
T Consensus        13 ~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~~sL~I~~~~~~Dsg~Y~C   89 (116)
T cd07706          13 VGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNF---QKAQKSISLTISALQLEDSAKYFC   89 (116)
T ss_pred             CCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEE---eccCCEEEEEECCCCHHHCEEEEE
Confidence            58999999997643 45678999732  1110   0         01111110   111224579999999999999999


Q ss_pred             EeeC
Q psy11826         67 VADN   70 (83)
Q Consensus        67 ~~~~   70 (83)
                      .+..
T Consensus        90 ~~~~   93 (116)
T cd07706          90 ALST   93 (116)
T ss_pred             EEEC
Confidence            9974

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.45  E-value=5.6e-06  Score=38.57  Aligned_cols=75  Identities=19%  Similarity=0.302  Sum_probs=45.5

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEec--CCCeEEEEEEEccCCCCC-CeEEEEEeeCCCcceee
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFL--GNNTIKSKMEIDPATQKD-AGYYECVADNPFAIDRR   77 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~g~~~~   77 (83)
                      +..+.|.|.+.++.++  .+.|.+++..+.............  ..+...+.|.+......+ ...|.|.+.........
T Consensus        18 ~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~~   97 (115)
T cd05769          18 KRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDTD   97 (115)
T ss_pred             CCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccce
Confidence            4568899999886444  679999998776432111111111  123345677776655433 57899999876544443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=98.40  E-value=1.3e-05  Score=36.24  Aligned_cols=66  Identities=9%  Similarity=0.210  Sum_probs=39.0

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccce-EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      +..+++.|.+.++.++  .+.|.++|..+..... ...... .+.+...+.|.+..-.  ....|.|.+...
T Consensus        16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~-~dty~~~S~L~vt~~~--~~~~ysC~V~H~   84 (96)
T cd07697          16 QGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKD-NDVYSTTSWLTVTKDS--LGKKFRCIYKHE   84 (96)
T ss_pred             CCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecC-CCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence            4567999999986554  4699999987653321 111111 1223334556655432  234599999873

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.34  E-value=2.3e-05  Score=35.37  Aligned_cols=67  Identities=22%  Similarity=0.340  Sum_probs=39.5

Q ss_pred             eEEEEeEe-CccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          5 KITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         5 ~~~~~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .....|.+ .|.|.+.|.|+++   +.............+.....+.|.+......+...|.|.+.+..-.
T Consensus        17 ~~va~C~s~~gkP~a~ItW~~~---~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~   84 (95)
T cd05719          17 VTVATCVSANGKPPATISWETT---LGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ   84 (95)
T ss_pred             cEEEEEECCCCcCCCEEEEEeC---CCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            35677986 5789999999986   1111111111111122334567777555555567799999887643

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PHA03376 BARF1; Provisional

Probab=98.31  E-value=2e-05  Score=39.65  Aligned_cols=70  Identities=17%  Similarity=0.215  Sum_probs=42.7

Q ss_pred             CCceEEEEeEeCc---cCCCeEEEEeCC----EEec-c------cceEEEEEEec-CCCeEEEEEEEccCCCCCCeEEEE
Q psy11826          2 LGRKITFFCMAEG---FPRPHITWTKDD----IELT-F------HKYFQVHEWFL-GNNTIKSKMEIDPATQKDAGYYEC   66 (83)
Q Consensus         2 ~g~~~~~~C~~~~---~~~~~~~w~~~~----~~~~-~------~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C   66 (83)
                      +|+.+.+.|.-..   .....|.|++.+    .-+. .      ...+.....++ -+...+.+|.|.+++.+|.|.|.|
T Consensus        25 VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGtY~C  104 (221)
T PHA03376         25 LGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLC  104 (221)
T ss_pred             eCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCceEEE
Confidence            5889999998542   244578999842    1111 0      11111111111 111245689999999999999999


Q ss_pred             EeeCC
Q psy11826         67 VADNP   71 (83)
Q Consensus        67 ~~~~~   71 (83)
                      .....
T Consensus       105 ~fQkg  109 (221)
T PHA03376        105 RMKLG  109 (221)
T ss_pred             EEEcC
Confidence            99764

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.29  E-value=1.9e-05  Score=36.87  Aligned_cols=70  Identities=16%  Similarity=0.085  Sum_probs=41.0

Q ss_pred             CCceEEEEeEeCccC------CCeEEEEeCCEE----e-c--ccceE----EE-EEEec--CCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGFP------RPHITWTKDDIE----L-T--FHKYF----QV-HEWFL--GNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~------~~~~~w~~~~~~----~-~--~~~~~----~~-~~~~~--~~~~~~~~l~i~~~~~~~~   61 (83)
                      .|+.++|.|......      ...+.|++....    . .  .....    .. .+...  ........|.|.+++.+|+
T Consensus        13 ~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~~~Ds   92 (119)
T cd05712          13 EGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQPEDS   92 (119)
T ss_pred             ccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCChhhC
Confidence            589999999854221      245899974321    0 0  00000    00 01111  1123346799999999999


Q ss_pred             eEEEEEeeCC
Q psy11826         62 GYYECVADNP   71 (83)
Q Consensus        62 g~y~C~~~~~   71 (83)
                      |.|.|.+...
T Consensus        93 g~Y~C~~~~~  102 (119)
T cd05712          93 GKYFFRVELG  102 (119)
T ss_pred             eEEEEEEEcC
Confidence            9999988653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=98.28  E-value=3.2e-05  Score=34.89  Aligned_cols=68  Identities=16%  Similarity=0.226  Sum_probs=40.0

Q ss_pred             eEEEEeEeC-ccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          5 KITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         5 ~~~~~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .+.+.|.+. +.|.+.|.|+++.   ............++.....+.|.+......+...+.|.+.+.....
T Consensus        17 ~~va~C~s~~gkPaa~IsW~~~~---~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~   85 (95)
T cd07703          17 VPVAKCVSANGRPPARISWSSTL---GGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQE   85 (95)
T ss_pred             cEEEEEEcCCCCCCcEEEEEcCC---CCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence            457789865 7899999999862   1111111111111222345667775555555677999999876443

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.25  E-value=2.8e-05  Score=35.06  Aligned_cols=69  Identities=20%  Similarity=0.304  Sum_probs=41.9

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccc-eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHK-YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      ++.+.+.|.+.++.+.  .+.|.++|.. .... ........+..+...+.|.+..........|.|.+....
T Consensus        16 ~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          16 SDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            4568999999986553  5689999987 3221 111111112334455667766544334567999998754

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG4222|consensus

Probab=98.24  E-value=1.7e-06  Score=52.71  Aligned_cols=74  Identities=24%  Similarity=0.401  Sum_probs=48.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      +|..++|.|...+.|+|.+.|.+.+........................|.+.++...|.|.|.|...+..+..
T Consensus       329 lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss  402 (1281)
T KOG4222|consen  329 LGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSS  402 (1281)
T ss_pred             cCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeeccccccccc
Confidence            36678999999999999999999775432211000000000011112269999999999999999988776654

>smart00406 IGv Immunoglobulin V-Type

Probab=98.21  E-value=2e-05  Score=33.87  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=18.5

Q ss_pred             EEEEEEEccCCCCCCeEEEEE
Q psy11826         47 IKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus        47 ~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      ....|.|.+++.+|+|.|.|.
T Consensus        60 ~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406       60 NDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEcCCCHHHCEEEEEc
Confidence            346799999999999999995

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.17  E-value=2.5e-05  Score=35.50  Aligned_cols=70  Identities=16%  Similarity=0.227  Sum_probs=42.2

Q ss_pred             CCceEEEEeEeCccC-C--CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFP-R--PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~-~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .++.+.+.|.+.++. +  ..+.|.+++.. .. .........+..+...+.|.+..-.......|.|.+.....
T Consensus        18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~-~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          18 LGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EA-VQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             cCCccEEEEEEeccCCCCCeEEEEEECCcc-Cc-EEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            356789999998865 3  35899998865 11 10011111122344556677665445555779999987654

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.14  E-value=4.9e-05  Score=35.48  Aligned_cols=69  Identities=16%  Similarity=0.328  Sum_probs=39.9

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeC--CEEec------cc-ceE-E----EEEEec--CCCeEEEEEEEccCCCCCCeE
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKD--DIELT------FH-KYF-Q----VHEWFL--GNNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~--~~~~~------~~-~~~-~----~~~~~~--~~~~~~~~l~i~~~~~~~~g~   63 (83)
                      .|++++|.|......  ...+.|++.  |....      .. ... .    ...+..  ........|.|.+++.+|+|.
T Consensus        11 ~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsa~   90 (117)
T cd04981          11 PGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPEDTAV   90 (117)
T ss_pred             CCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHHHCEE
Confidence            589999999865432  456899972  22110      00 000 0    000000  011122369999999999999


Q ss_pred             EEEEeeC
Q psy11826         64 YECVADN   70 (83)
Q Consensus        64 y~C~~~~   70 (83)
                      |.|-...
T Consensus        91 YyCa~~~   97 (117)
T cd04981          91 YYCARGL   97 (117)
T ss_pred             EEEEEEc
Confidence            9998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.07  E-value=7.3e-06  Score=39.22  Aligned_cols=32  Identities=19%  Similarity=0.317  Sum_probs=26.4

Q ss_pred             EEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826         50 KMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus        50 ~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      +|.|.+++.+|+|.|.|.+.+..+.......|
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l   33 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQL   33 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEE
Confidence            68899999999999999998877766555544

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=98.06  E-value=4.5e-05  Score=31.94  Aligned_cols=51  Identities=31%  Similarity=0.465  Sum_probs=32.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|..++|.|+....   .+.|.+++..+.....               .+.+.+-. ++.|.|.|.+.+.
T Consensus         6 sGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~---------------~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           6 SGTTVTVTCPLSGD---DIKWKKNDQVSQGSDE---------------KYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             eccEEEEECCCCCC---CceEEeCCccCCCCCc---------------eEEeeccC-CCCceEEEEeCCC
Confidence            47889999985422   3899999865554321               12222223 7789999988643

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA02633 hypothetical protein; Provisional

Probab=97.90  E-value=6.4e-05  Score=31.11  Aligned_cols=33  Identities=33%  Similarity=0.402  Sum_probs=26.5

Q ss_pred             EEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826         50 KMEIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus        50 ~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      .|.|.++..+|+|.|.|...|..-.....+.+.
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~   51 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLC   51 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEE
Confidence            588889999999999999998776666555543

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.57  E-value=0.00092  Score=28.35  Aligned_cols=48  Identities=21%  Similarity=0.454  Sum_probs=31.7

Q ss_pred             ceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         4 ~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      +.+.+.|..    .-.|.|++ |..+....              ..++.|........|.|.|.+.+
T Consensus         7 ~~V~L~C~~----~tsi~W~k-G~~~~~~~--------------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           7 GKVFLKCNG----ATNITWKK-GKEILEVS--------------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             ceEEEEecC----CCcEEEec-Cccccccc--------------ccEEeccCcccCCCcceEecCcc
Confidence            457888964    24599999 54433221              13566667676778999998765

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.57  E-value=0.0013  Score=29.88  Aligned_cols=76  Identities=24%  Similarity=0.308  Sum_probs=42.9

Q ss_pred             CceEEE-EeEe-CccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc--ceeeE
Q psy11826          3 GRKITF-FCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA--IDRRG   78 (83)
Q Consensus         3 g~~~~~-~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g--~~~~~   78 (83)
                      |+.+.+ .|.+ .+.|.+.|.|+.+......   .......++.....+.+.+......|...+.|.+....-  .....
T Consensus        16 g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~---~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~~~~~~~   92 (97)
T cd07704          16 GNGTTLAACCAAEGRPAADVTWETNVYGTSE---SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQQDFRIT   92 (97)
T ss_pred             CcceeEEEEEccCCccCCEeEEeCCCCCccc---eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccCCCceee
Confidence            445555 6774 5789999999975322111   111111122233455677765556667789999987643  33334


Q ss_pred             EEE
Q psy11826         79 FRT   81 (83)
Q Consensus        79 ~~~   81 (83)
                      +.|
T Consensus        93 ~~L   95 (97)
T cd07704          93 HIL   95 (97)
T ss_pred             EEe
Confidence            444

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.41  E-value=0.00021  Score=34.04  Aligned_cols=80  Identities=9%  Similarity=0.171  Sum_probs=42.6

Q ss_pred             CceEEEEeEeCc-----cCCCeEEEEeCCEEecccc--eEEEEEEe------cCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          3 GRKITFFCMAEG-----FPRPHITWTKDDIELTFHK--YFQVHEWF------LGNNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         3 g~~~~~~C~~~~-----~~~~~~~w~~~~~~~~~~~--~~~~~~~~------~~~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      .+++.++|.+..     .+...+.|..++..+..-.  ........      ..-..+.++|.+...+.- .|.|+|.+.
T Consensus        27 N~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeVt  105 (130)
T PF08204_consen   27 NDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEVT  105 (130)
T ss_dssp             -SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEEE
T ss_pred             CCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEEE
Confidence            577889998754     2344689999887654211  00000000      011123456777664433 799999998


Q ss_pred             CCCcceeeEEEEeC
Q psy11826         70 NPFAIDRRGFRTDY   83 (83)
Q Consensus        70 ~~~g~~~~~~~~~~   83 (83)
                      ...........|+|
T Consensus       106 ~~~~ege~~i~Lk~  119 (130)
T PF08204_consen  106 ELSREGETTIELKY  119 (130)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             ecCCCceEEEEEEE
Confidence            87777766666653

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>KOG4597|consensus

Probab=97.30  E-value=0.00064  Score=38.76  Aligned_cols=75  Identities=21%  Similarity=0.196  Sum_probs=48.7

Q ss_pred             CceEEEEeEeCccCCCeEEEEe---CCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          3 GRKITFFCMAEGFPRPHITWTK---DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      ++...+.|.++|++.+.|.|.+   +...+..... .....  .-......|.|.+....|+|.|.|.+.+..|.....+
T Consensus       211 wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~n-q~~e~--p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rdv  287 (560)
T KOG4597|consen  211 WETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPN-QTVEN--PVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRDV  287 (560)
T ss_pred             chhhcccccccCCcCceeeeehhhccccceeecCc-cccCC--cceeeeeeEEEcchhhcCCCceeeccccccceeeccc
Confidence            4566788999999999999975   2222221110 00000  0011134688999999999999999999988766554


Q ss_pred             E
Q psy11826         80 R   80 (83)
Q Consensus        80 ~   80 (83)
                      .
T Consensus       288 ~  288 (560)
T KOG4597|consen  288 P  288 (560)
T ss_pred             e
Confidence            3

>PHA03042 CD47-like protein; Provisional

Probab=97.28  E-value=0.0054  Score=32.79  Aligned_cols=68  Identities=18%  Similarity=0.313  Sum_probs=42.5

Q ss_pred             CceEEEEeEeCcc-----CCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826          3 GRKITFFCMAEGF-----PRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         3 g~~~~~~C~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~   77 (83)
                      .+++.++|.....     ....+.|..++..+......+           .++|.+...+ .-.|+|+|.+.+......+
T Consensus        31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn-----------~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~   98 (286)
T PHA03042         31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTN-----------TSSLKFNFSK-NLSGNYTCEAINKFNKIKN   98 (286)
T ss_pred             CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCc-----------ceEEEEeccc-cCCCceeEEEeecccCccE
Confidence            4678889986432     456799999887665432211           2456654432 3379999999876555455


Q ss_pred             EEEEe
Q psy11826         78 GFRTD   82 (83)
Q Consensus        78 ~~~~~   82 (83)
                      ...++
T Consensus        99 ~IeLk  103 (286)
T PHA03042         99 TIELQ  103 (286)
T ss_pred             EEEEE
Confidence            54443

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=96.95  E-value=0.0089  Score=27.08  Aligned_cols=72  Identities=17%  Similarity=0.267  Sum_probs=42.8

Q ss_pred             EEEEeE-eCccCCCeEEEEe--CCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826          6 ITFFCM-AEGFPRPHITWTK--DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus         6 ~~~~C~-~~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      +.-.|. +.|.|++.|.|..  +|..     ..+.....++.....+.+.+-.....|.....|.+..........+.|+
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-----etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~   97 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDTRLKGEA-----EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN   97 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEccCCCce-----eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence            344687 5689999999974  2321     1111111222233445666666677778889999987655555455443

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.85  E-value=0.0057  Score=32.57  Aligned_cols=49  Identities=20%  Similarity=0.371  Sum_probs=36.1

Q ss_pred             CCCeEEEEe-CCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826         16 PRPHITWTK-DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus        16 ~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .-|...|.. +|..+......++.+        ...|.+.+-..+.+|.|+|......
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~--------TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITE--------TGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEcc--------CceEEeeccccccCCceEEEEEEEe
Confidence            457889987 455566666666544        3469999999999999999987543

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>KOG3515|consensus

Probab=96.85  E-value=0.0011  Score=39.74  Aligned_cols=64  Identities=13%  Similarity=0.224  Sum_probs=42.9

Q ss_pred             CCCceEEEEeEeCccCC-CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          1 MLGRKITFFCMAEGFPR-PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      +.|+.+.+.|.+.+.|+ +.+.|++.+....... ..+         ....|......+...+.|.|.+.|..+.
T Consensus        20 ~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~~c~a~ns~~~   84 (741)
T KOG3515|consen   20 RLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRY-ATI---------ADPTLVTTGDVRDTVAELNCRAFNSVGM   84 (741)
T ss_pred             ccCCcceeeeecCCCCCCcceEEEecCccccccc-ccc---------cCCceeeecchhhhhhhhhhhhcccccC
Confidence            36899999999887655 5699999776554111 111         1235666666666678899988887554

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.66  E-value=0.018  Score=26.36  Aligned_cols=69  Identities=22%  Similarity=0.241  Sum_probs=35.7

Q ss_pred             CCceEEEEeEeCc-cCC--CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCe-EEEEEeeCCC
Q psy11826          2 LGRKITFFCMAEG-FPR--PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG-YYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~~~~~~   72 (83)
                      +|+.+++.|.+.+ .|.  ..+.|++....+.... +.............+.+.+.. +++|.| .|.|.+.-..
T Consensus        14 ~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l   86 (99)
T cd07689          14 EGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHI   86 (99)
T ss_pred             CCceEEEEEEecCcccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEee
Confidence            5899999999865 444  4688887554433221 000000000000012344433 366665 8999987443

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.59  E-value=0.023  Score=26.72  Aligned_cols=62  Identities=10%  Similarity=0.099  Sum_probs=37.2

Q ss_pred             CceEEEEeEeCccC--C-CeEEEEe--CCEEec-----c---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeE
Q psy11826          3 GRKITFFCMAEGFP--R-PHITWTK--DDIELT-----F---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         3 g~~~~~~C~~~~~~--~-~~~~w~~--~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   63 (83)
                      |..+++.|...+..  . -.+.|.+  .+ .+.     .         ..++....   +.......|.+..++.+|.+.
T Consensus        13 ~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~---~~s~ntv~L~l~~L~a~DTa~   88 (115)
T cd05721          13 NGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDG---TLGNEQVNFTLQNLRANQTDI   88 (115)
T ss_pred             CCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeE---eCCCCEEEEEEcCCCHHHCeE
Confidence            56799999986643  3 3578876  23 211     0         00111111   112224579999999999999


Q ss_pred             EEEEe
Q psy11826         64 YECVA   68 (83)
Q Consensus        64 y~C~~   68 (83)
                      |.|-.
T Consensus        89 Y~Ca~   93 (115)
T cd05721          89 YFCKI   93 (115)
T ss_pred             EEEEe
Confidence            99944

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>KOG1480|consensus

Probab=95.59  E-value=0.0024  Score=38.60  Aligned_cols=63  Identities=24%  Similarity=0.438  Sum_probs=43.3

Q ss_pred             ceEEEEeE-eCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          4 RKITFFCM-AEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         4 ~~~~~~C~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      ..+++.|. ..+.|...++|++++..+.........        ....+.+..+...|.+.|+|.+.|..+.
T Consensus       145 s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~--------~d~~li~~~arlsd~~nytc~a~ni~~~  208 (909)
T KOG1480|consen  145 TTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRA--------SDHNLIISQARLSDSGNYTCEATNIVAK  208 (909)
T ss_pred             ccccccccCcccchhhhhhccccCCCCCccccchhh--------hcCCccccchhhhhcccceeeeehhhcc
Confidence            34455565 456777788999998877663321111        1235778888999999999999987654

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=94.99  E-value=0.31  Score=27.33  Aligned_cols=21  Identities=19%  Similarity=0.505  Sum_probs=16.6

Q ss_pred             eEEEEeEeCccCCC--eEEEEeC
Q psy11826          5 KITFFCMAEGFPRP--HITWTKD   25 (83)
Q Consensus         5 ~~~~~C~~~~~~~~--~~~w~~~   25 (83)
                      .+++.|.+.|+.+.  .+.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            46899999997654  4689998

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=94.89  E-value=0.1  Score=24.27  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=24.7

Q ss_pred             EEEEccCCCCCCeEEEEEeeCCCcce-eeEEEE
Q psy11826         50 KMEIDPATQKDAGYYECVADNPFAID-RRGFRT   81 (83)
Q Consensus        50 ~l~i~~~~~~~~g~y~C~~~~~~g~~-~~~~~~   81 (83)
                      +|.|..++.+|+|.|...+.+..|.. .+.|.+
T Consensus        72 aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqV  104 (108)
T PF11465_consen   72 ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQV  104 (108)
T ss_dssp             EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEE
T ss_pred             eEEEeecCcccCceEEEEEEcCCCcEEEEEEEE
Confidence            69999999999999999999988865 445554

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG3515|consensus

Probab=94.75  E-value=0.27  Score=30.43  Aligned_cols=69  Identities=25%  Similarity=0.377  Sum_probs=41.0

Q ss_pred             CceEEEEeEe--CccCCCeEEEEeCCEEecccce--EEEEEEecCCC-eEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          3 GRKITFFCMA--EGFPRPHITWTKDDIELTFHKY--FQVHEWFLGNN-TIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         3 g~~~~~~C~~--~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      +..+.+.|..  .+.|.+.+.|..+.........  .........+. .-.+.+.+......+.|.|+|.+.+.
T Consensus       112 ~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr  185 (741)
T KOG3515|consen  112 KGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNR  185 (741)
T ss_pred             CCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccc
Confidence            4567777853  4577888999988765443211  11100001111 11345666667788899999999984

>PHA02982 hypothetical protein; Provisional

Probab=94.73  E-value=0.29  Score=25.72  Aligned_cols=26  Identities=15%  Similarity=0.406  Sum_probs=22.6

Q ss_pred             EEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826         48 KSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus        48 ~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+|++..+..+..|.|.|.+....+
T Consensus        99 ~STLTIkk~~i~N~GCYtc~~ks~~~  124 (251)
T PHA02982         99 SSTFTMKKPDPQNLGCFTCEAKDAEG  124 (251)
T ss_pred             ceeEEeccCCcccCCceEEEEecCCC
Confidence            46899999999999999999987554

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=94.45  E-value=0.2  Score=22.52  Aligned_cols=59  Identities=17%  Similarity=0.367  Sum_probs=35.5

Q ss_pred             CCceEEEEeEeCc-----cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEG-----FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~-----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|++++..|....     .....+.|..++..++.+....+.     .  ..+...+........-.|-|.
T Consensus        17 lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in-----~--~~SsVT~~~~~~~~~~L~cC~   80 (89)
T PF06328_consen   17 LGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVIN-----D--TVSSVTLPNLNPTGATLFCCK   80 (89)
T ss_dssp             TTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEES-----T--TEEEEEESS--SSEEEEEEEE
T ss_pred             CCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeC-----C--eEEEEEEccCCCCCceEEEEE
Confidence            6899999998642     245678999988877776543321     1  135677777665555556565

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA03052 Hypothetical protein; Provisional

Probab=93.55  E-value=0.27  Score=20.94  Aligned_cols=28  Identities=18%  Similarity=0.414  Sum_probs=21.1

Q ss_pred             CCceEEEEeEeCc-c--CCCeEEEEeCCEEe
Q psy11826          2 LGRKITFFCMAEG-F--PRPHITWTKDDIEL   29 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~--~~~~~~w~~~~~~~   29 (83)
                      .|+++++.|.+.- .  ..+.+.|..|+..+
T Consensus        11 lGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052         11 LGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             ccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            5889999999753 2  24568899998777

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=92.51  E-value=1.3  Score=25.82  Aligned_cols=70  Identities=19%  Similarity=0.264  Sum_probs=43.1

Q ss_pred             CCceEEEEeEeCc--c-CCCeEEEEeCCEEec-----------------ccceEEEEEEecCCC-eEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEG--F-PRPHITWTKDDIELT-----------------FHKYFQVHEWFLGNN-TIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~--~-~~~~~~w~~~~~~~~-----------------~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~   60 (83)
                      +|+++.+.|...-  . ....+.|+..+-++.                 ....+.+.....-+. --.++|+|..+.-+.
T Consensus       278 ~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~I~N  357 (500)
T PHA02914        278 VGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAHINN  357 (500)
T ss_pred             cCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEEEEc
Confidence            4888999998643  2 233578876543322                 112233333211111 134689999999999


Q ss_pred             CeEEEEEeeCC
Q psy11826         61 AGYYECVADNP   71 (83)
Q Consensus        61 ~g~y~C~~~~~   71 (83)
                      .|.|.|.+...
T Consensus       358 ~GCY~~~a~~g  368 (500)
T PHA02914        358 AGCYEAQAFMG  368 (500)
T ss_pred             CCceEEEEecC
Confidence            99999998754

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=92.25  E-value=0.52  Score=20.74  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=16.2

Q ss_pred             EEEccCCCCCCeEEEEEe-eCCC
Q psy11826         51 MEIDPATQKDAGYYECVA-DNPF   72 (83)
Q Consensus        51 l~i~~~~~~~~g~y~C~~-~~~~   72 (83)
                      ........+|+|.+.|.+ .+..
T Consensus        45 ~~~~~~~~~d~G~w~C~a~~~~~   67 (80)
T PF05790_consen   45 VSTFTPTTEDSGTWVCTASDNEP   67 (80)
T ss_dssp             EEEESBTCGGSEEEEEEEEECTT
T ss_pred             EEEecCCCCCCEEEEEEEcCCce
Confidence            444566778999999999 4443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03271 envelope glycoprotein C; Provisional

Probab=91.86  E-value=1.6  Score=25.54  Aligned_cols=69  Identities=14%  Similarity=0.171  Sum_probs=38.9

Q ss_pred             CCCceEEEEeEeCccCCC---eEEEEeCCEEecccceEEEEE---EecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          1 MLGRKITFFCMAEGFPRP---HITWTKDDIELTFHKYFQVHE---WFLGNNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      +.|+...-.|.+..+.+|   .+.|+.+|.............   ...+.....+++.+........-..+|.+.
T Consensus       258 L~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~  332 (490)
T PHA03271        258 LSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVA  332 (490)
T ss_pred             ccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEE
Confidence            357888888998765433   578999987765433211111   011122334556655443334557888773

>PHA03269 envelope glycoprotein C; Provisional

Probab=91.66  E-value=1.8  Score=25.83  Aligned_cols=69  Identities=16%  Similarity=0.218  Sum_probs=39.5

Q ss_pred             CCCceEEEEeEeCccCCC---eEEEEeCCEEecccceEEEEE-EecCCCeEEEEEEEccCCCCC--CeEEEEEee
Q psy11826          1 MLGRKITFFCMAEGFPRP---HITWTKDDIELTFHKYFQVHE-WFLGNNTIKSKMEIDPATQKD--AGYYECVAD   69 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~--~g~y~C~~~   69 (83)
                      +.|+...-.|.+..+.+|   .+.|+.++..+.......... ..++.....|++.+......+  .-..+|.+.
T Consensus       340 L~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~  414 (566)
T PHA03269        340 LLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVL  414 (566)
T ss_pred             ccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEE
Confidence            457888889998765433   578999987776422111111 122234445667664433233  466788773

>PHA03270 envelope glycoprotein C; Provisional

Probab=89.65  E-value=2.8  Score=24.66  Aligned_cols=69  Identities=10%  Similarity=0.111  Sum_probs=40.0

Q ss_pred             CCCceEEEEeEeCccCCC---eEEEEeCCEEecccceE-EEEEEecCCCeEEEEEEEccCCCCC-CeEEEEEee
Q psy11826          1 MLGRKITFFCMAEGFPRP---HITWTKDDIELTFHKYF-QVHEWFLGNNTIKSKMEIDPATQKD-AGYYECVAD   69 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~~---~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~   69 (83)
                      +.|+...-.|.+..+.+|   .+.|+.++..+...... .......+.....+++.+....... .-..+|.+.
T Consensus       232 L~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~  305 (466)
T PHA03270        232 LEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFT  305 (466)
T ss_pred             ccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEE
Confidence            457888888998765433   57899999877532211 1111222334456667665544322 346888773

>PHA03273 envelope glycoprotein C; Provisional

Probab=88.53  E-value=3.6  Score=24.44  Aligned_cols=69  Identities=20%  Similarity=0.404  Sum_probs=40.8

Q ss_pred             CCCceEEEEeEeCccCCC---eEEEEeCCEEecccce-EEEEE-EecCCCeEEEEEEEccCCC-CCCeEEEEEee
Q psy11826          1 MLGRKITFFCMAEGFPRP---HITWTKDDIELTFHKY-FQVHE-WFLGNNTIKSKMEIDPATQ-KDAGYYECVAD   69 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~~---~~~w~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~l~i~~~~~-~~~g~y~C~~~   69 (83)
                      +.|+...-.|.+..+.+|   .+.|+.++..+..... ..... ...+.....++|.+..... ...-..+|.+.
T Consensus       248 L~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~  322 (486)
T PHA03273        248 LKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIE  322 (486)
T ss_pred             ccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEE
Confidence            457888888998765433   5789999988773221 11111 1122234456677766543 33567888773

>PHA03112 IL-18 binding protein; Provisional

Probab=83.70  E-value=3.9  Score=20.23  Aligned_cols=74  Identities=12%  Similarity=0.092  Sum_probs=39.1

Q ss_pred             CCceEEEEeEeCcc-CC-CeEEEEeCC-EEec---ccce--EEEE--EEe-cCCCeEEEEEEEccCCCC-CCeEEEEEee
Q psy11826          2 LGRKITFFCMAEGF-PR-PHITWTKDD-IELT---FHKY--FQVH--EWF-LGNNTIKSKMEIDPATQK-DAGYYECVAD   69 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~-~~~~w~~~~-~~~~---~~~~--~~~~--~~~-~~~~~~~~~l~i~~~~~~-~~g~y~C~~~   69 (83)
                      .++++.+.|.+.+. |. ..+.|...+ ....   ..++  .++.  ... .-.......+.+.+++.. +...++|...
T Consensus        37 ~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL~  116 (141)
T PHA03112         37 ETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVLM  116 (141)
T ss_pred             CCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEEe
Confidence            46788999997654 54 457898654 2211   1000  0010  000 011233456777777744 3458889887


Q ss_pred             CCCcce
Q psy11826         70 NPFAID   75 (83)
Q Consensus        70 ~~~g~~   75 (83)
                      ...+..
T Consensus       117 D~~~~~  122 (141)
T PHA03112        117 DLDGPI  122 (141)
T ss_pred             cCCchh
Confidence            655543

>COG5475 Uncharacterized small protein [Function unknown]

Probab=83.56  E-value=1.6  Score=17.85  Aligned_cols=19  Identities=32%  Similarity=0.725  Sum_probs=14.7

Q ss_pred             CeEEEEEeeCCCcceeeEE
Q psy11826         61 AGYYECVADNPFAIDRRGF   79 (83)
Q Consensus        61 ~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|.|.|...+..|.....|
T Consensus        28 ~Gmy~C~Wf~g~g~~~~~F   46 (60)
T COG5475          28 DGMYECRWFDGYGVKREAF   46 (60)
T ss_pred             CCeEEEEEecCCCcccccc
Confidence            4999999999888665444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	83
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-05
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-05
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		2e-05
3kld_A	384	Ptprg Cntn4 Complex Length = 384		4e-05
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		4e-05
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		7e-05
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		9e-05
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-04
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		1e-04
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-04
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		2e-04
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		2e-04
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		3e-04
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		5e-04
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		6e-04
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		7e-04
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		8e-04
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		9e-04

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPA-TQKDA 61
          G   +F C A G PRP I W K   +++ ++ F+V E+  G+ ++   + I P  T +D 
Sbjct: 21 GGVASFICQATGDPRPKIVWNKKGKKVS-NQRFEVIEFDDGSGSV---LRIQPLRTPRDE 76
Query: 62 GYYECVADN 70
            YECVA N
Sbjct: 77 AIYECVASN 85

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPA-TQK 59
          + G   +F C A G P+P ITW K   +++  + F+V E+  G  ++   + I P   Q+
Sbjct: 19 LSGGVASFVCQATGEPKPRITWMKKGKKVSSQR-FEVIEFDDGAGSV---LRIQPLRVQR 74
Query: 60 DAGYYECVADNPFA 73
          D   YEC A N   
Sbjct: 75 DEAIYECTATNSLG 88

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPA-TQK 59
          + G   +F C A G P+P ITW K   +++  + F+V E+  G  ++   + I P   Q+
Sbjct: 20 LSGGVASFVCQATGEPKPRITWMKKGKKVSSQR-FEVIEFDDGAGSV---LRIQPLRVQR 75
Query: 60 DAGYYECVADNPFA 73
          D   YEC A N   
Sbjct: 76 DEAIYECTATNSLG 89

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 4  RKITFFCMAEGFPRPHITW----TKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
          +K+   C  +G P+PHI W    T  DI + F +Y  V    L NN         P   +
Sbjct: 24 KKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDF-RYSVVDGSLLINN---------PNKTQ 73
Query: 60 DAGYYECVADNPFA 73
          DAG Y+C+A N F 
Sbjct: 74 DAGTYQCIATNSFG 87

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 4  RKITFFCMAEGFPRPHITW----TKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
          +K+   C  +G P+PHI W    T  DI + F +Y  V    L NN         P   +
Sbjct: 23 KKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDF-RYSVVDGSLLINN---------PNKTQ 72
Query: 60 DAGYYECVADNPFA 73
          DAG Y+C+A N F 
Sbjct: 73 DAGTYQCIATNSFG 86

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G  +   C+A G P P I+W  D  ++  +  +QV ++   N  + S + I      D G
Sbjct: 444 GPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGG 503
Query: 63  YYECVADNPFAI 74
            Y+C+A +   +
Sbjct: 504 LYKCIAKSKVGV 515

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPA-TQKDA 61
          G   +F C A G P+P +TW K   ++   + F+  E+   + +  + + I P  T +D 
Sbjct: 21 GGVASFVCQATGDPKPRVTWNKKGKKVNSQR-FETIEF---DESAGAVLRIQPLRTPRDE 76
Query: 62 GYYECVADNP 71
            YECVA NP
Sbjct: 77 NIYECVAQNP 86

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 4   RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK----SKMEIDPATQK 59
           R  T  C A G P P ITW KD         F   +    N  IK      ++I+ + + 
Sbjct: 124 RTATMLCAASGNPDPEITWFKD---------FLPVDPSASNGRIKQLRSGALQIESSEET 174
Query: 60  DAGYYECVADNPFAI 74
           D G YECVA N   +
Sbjct: 175 DQGKYECVATNSAGV 189

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           LG+ +T  C A+GFP P ++WTKD   +   +       F  ++   S++ I    + D 
Sbjct: 210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS---SELTIRNVDKNDE 266
Query: 62  GYYECVADN 70
             Y C+A+N
Sbjct: 267 AEYVCIAEN 275

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 4   RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK----SKMEIDPATQK 59
           R  T  C A G P P ITW KD         F   +    N  IK      ++I+ + + 
Sbjct: 124 RTATMLCAASGNPDPEITWFKD---------FLPVDPSASNGRIKQLRSGALQIESSEET 174
Query: 60  DAGYYECVADNPFAI 74
           D G YECVA N   +
Sbjct: 175 DQGKYECVATNSAGV 189

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G+     C   G P P ++W  D   +   +    H+  +  N + S + I+P T +DAG
Sbjct: 24 GKLCRMDCKVSGLPTPDLSWQLDGKPV---RPDSAHKMLVRENGVHS-LIIEPVTSRDAG 79
Query: 63 YYECVADN 70
           Y C+A N
Sbjct: 80 IYTCIATN 87

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 13/71 (18%)
Query: 4   RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKS----KMEIDPATQK 59
           R  T  C A G P P ITW KD         F   +    N  IK      ++I+ + + 
Sbjct: 124 RTATMLCAASGNPDPEITWFKD---------FLPVDPSASNGRIKQLRSGALQIESSEET 174
Query: 60  DAGYYECVADN 70
           D G YECVA N
Sbjct: 175 DQGKYECVATN 185

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 8/71 (11%)
Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G K    C   G P+P ++W K D  L  +    V E           + I    ++DAG
Sbjct: 115 GLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLE--------SGSLRIHNVQKEDAG 166
Query: 63  YYECVADNPFA 73
            Y CVA N   
Sbjct: 167 QYRCVAKNSLG 177

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 11/70 (15%)
Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           ++G+++T  C A G P P I W K D  L+        +W     T +  ++I   + +D
Sbjct: 219 LVGQQVTLECFAFGNPVPRIKWRKVDGSLS-------PQW----TTAEPTLQIPSVSFED 267
Query: 61  AGYYECVADN 70
            G YEC A+N
Sbjct: 268 EGTYECEAEN 277

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 2  LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
          L + +T  C A+GFP P +TWTKD   +      + + +    N   S++ I    + D 
Sbjct: 27 LSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSF----NYDGSELIIKKVDKSDE 82
Query: 62 GYYECVADN 70
            Y C+A+N
Sbjct: 83 AEYICIAEN 91

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTF-HKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           +G  +   C A G P P+I W K+  ++   +  + + + FL         +I+ + ++D
Sbjct: 124 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFL---------QIENSREED 174
Query: 61  AGYYECVADNPFAID 75
            G YECVA+N    +
Sbjct: 175 QGKYECVAENSMGTE 189

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 8/65 (12%)
Query: 6   ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE 65
           I F C   G P P + W K+   +    YFQ+    +G     S + I    + D G+Y+
Sbjct: 330 IEFECAVSGKPVPTVNWMKNGDVVIPSDYFQI----VGG----SNLRILGVVKSDEGFYQ 381
Query: 66  CVADN 70
           CVA+N
Sbjct: 382 CVAEN 386

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTF-HKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           +G  +   C A G P P+I W K+  ++   +  + + + FL         +I+ + ++D
Sbjct: 126 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFL---------QIENSREED 176
Query: 61  AGYYECVADNPFAID 75
            G YECVA+N    +
Sbjct: 177 QGKYECVAENSMGTE 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	83
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	4e-18
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-18
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-13
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	7e-18
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-14
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-17
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-14
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-17
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	9e-15
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-14
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-07
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-17
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-14
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-11
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	3e-17
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-17
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-08
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-17
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-14
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	7e-17
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	6e-16
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-15
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	7e-17
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	7e-17
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	7e-17
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	8e-17
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-16
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-13
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-12
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	7e-08
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-16
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-14
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-12
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	9e-08
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-16
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-13
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-16
2ens_A	96	Advanced glycosylation END product-specific recept	1e-16
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-16
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-11
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-11
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-16
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-16
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	9e-08
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	3e-16
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-16
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-16
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-11
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	3e-16
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	4e-16
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-16
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-15
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	4e-16
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	4e-16
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-16
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-14
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-12
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-11
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	5e-16
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	5e-16
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-15
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	6e-16
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	6e-16
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	6e-16
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-14
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-13
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	8e-16
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	8e-16
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-13
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-15
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-15
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	7e-13
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	5e-12
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-15
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-15
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-15
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-15
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-14
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-15
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-14
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	7e-14
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-08
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-15
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-15
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-15
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-13
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-10
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	2e-15
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-15
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	5e-13
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-15
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-15
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-15
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	7e-09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-08
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-05
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-15
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	8e-14
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-15
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	4e-15
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-12
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	4e-15
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-12
1he7_A	126	High affinity nerve growth factor receptor; transf	4e-15
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	5e-15
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	8e-15
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	5e-15
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	6e-15
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	5e-15
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	6e-15
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-14
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	6e-15
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-14
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	9e-15
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	9e-14
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	7e-13
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	9e-15
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-14
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	8e-14
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-13
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-10
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-14
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-14
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-14
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	1e-11
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	5e-14
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-14
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-07
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-05
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	7e-14
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-13
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-13
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-10
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-08
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	7e-14
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	8e-14
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-05
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-09
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-13
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-13
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-05
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	6e-13
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	7e-13
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	9e-13
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-07
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	4e-05
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-12
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	4e-12
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-11
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-12
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	5e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-11
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-11
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-10
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-12
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-10
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-06
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	4e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-11
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	7e-12
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	7e-12
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-07
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-06
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	7e-12
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-04
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	8e-12
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	8e-10
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-08
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-11
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	1e-11
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-11
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	8e-11
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	2e-11
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-11
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-08
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	6e-07
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-11
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-11
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	6e-11
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-11
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-10
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-05
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-11
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	3e-04
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	6e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-11
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	6e-11
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-09
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	7e-11
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	9e-11
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	9e-11
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-10
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-10
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	6e-09
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-05
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-04
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-10
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-10
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-10
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-10
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	4e-09
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-10
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	6e-04
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-10
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	8e-10
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	8e-04
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-10
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-10
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	4e-10
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-06
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	4e-10
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-10
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-06
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-10
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	6e-10
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	9e-10
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-05
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-04
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-09
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-09
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-09
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	9e-08
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	7e-07
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	3e-09
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	3e-09
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	8e-06
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	4e-09
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	4e-09
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	5e-08
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-08
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-07
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-08
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	3e-08
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-07
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	4e-08
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	4e-08
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	6e-08
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	5e-07
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	9e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-07
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	1e-07
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	2e-07
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	3e-07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	4e-07
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	4e-07
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	6e-07
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	7e-07
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-05
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-06
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	4e-06
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	3e-06
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	3e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	4e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	9e-06
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	4e-06
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	6e-06
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-05
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	7e-05
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-05
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	6e-05
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	3e-05
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	4e-05
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	5e-05
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	4e-04
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	9e-05
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	1e-04
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	1e-04
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	1e-04
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	1e-04
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	3e-04
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	5e-04
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	6e-04
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	7e-04

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 70.9 bits (174), Expect = 4e-18
 Identities = 14/75 (18%), Positives = 26/75 (34%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
                    +G P+P + W  +   L   KY         +      +++D  T  + G
Sbjct: 16 DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNG 75

Query: 63 YYECVADNPFAIDRR 77
           Y  +A N +  D +
Sbjct: 76 DYTLIAKNEYGKDEK 90

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 72.8 bits (179), Expect = 6e-18
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G  ++      G P P ITW K    +  + ++QV        +  S +  +   +KDAG
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV----TRSFTSLVFPNGVERKDAG 174

Query: 63  YYECVADNPF 72
           +Y   A N F
Sbjct: 175 FYVVCAKNRF 184

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 60.9 bits (148), Expect = 2e-13
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
              T  C   G P+P + W +   E+         + F G      ++ I   T  DA 
Sbjct: 19 QSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY---HQLIIASVTDDDAT 75

Query: 63 YYECVADNPF 72
           Y+  A N  
Sbjct: 76 VYQVRATNQG 85

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 72.5 bits (178), Expect = 7e-18
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           + G K    C   G P+P ++W K D  L  +    V E    + +    + I    ++D
Sbjct: 113 IEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLE----SGS----LRIHNVQKED 164

Query: 61  AGYYECVADNPF 72
           AG Y CVA N  
Sbjct: 165 AGQYRCVAKNSL 176

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 64.4 bits (157), Expect = 1e-14
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 2  LGRKITFFCMAEGFPRPHITWTKDDIEL-TFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
          +    TF C  E +P+P I+WT++ I +  F   + + E       +     I      D
Sbjct: 21 VEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRE---NGQLLT----ILSVEDSD 73

Query: 61 AGYYECVADNP 71
           G Y C A+N 
Sbjct: 74 DGIYCCTANNG 84

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 73.4 bits (180), Expect = 1e-17
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           LG+ +T  C A+GFP P ++WTKD   +   +       F  ++   S++ I    + D 
Sbjct: 210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS---SELTIRNVDKNDE 266

Query: 62  GYYECVADNPF 72
             Y C+A+N  
Sbjct: 267 AEYVCIAENKA 277

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 64.5 bits (157), Expect = 3e-14
 Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 6/69 (8%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G      C       P I W     ++   K  +     L NN ++    I    + D G
Sbjct: 115 GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI--VLSNNYLQ----IRGIKKTDEG 168

Query: 63  YYECVADNP 71
            Y C     
Sbjct: 169 TYRCEGRIL 177

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 56.8 bits (137), Expect = 1e-11
 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 9/76 (11%)

Query: 1  MLGRKITFFCMAEGFPR-PHITWTKDD---IELTFHKYFQVHEWFLGNNTIKSKMEIDPA 56
           +G    F C   G  +   I+W   +   +     +   V      N+   S + I  A
Sbjct: 15 SVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVW-----NDDDSSTLTIYNA 69

Query: 57 TQKDAGYYECVADNPF 72
             DAG Y+CV     
Sbjct: 70 NIDDAGIYKCVVTAED 85

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 73.8 bits (181), Expect = 2e-17
 Identities = 19/70 (27%), Positives = 33/70 (47%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G  +   C+A G P P I+W  D  ++  +  +QV ++   N  + S + I      D G
Sbjct: 444 GPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGG 503

Query: 63  YYECVADNPF 72
            Y+C+A +  
Sbjct: 504 LYKCIAKSKV 513

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 66.5 bits (162), Expect = 9e-15
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
              +   C A+G+P P   W K     T  +   +++     +     + I  A  +D+G
Sbjct: 263 SSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT---LIIKDAVVEDSG 319

Query: 63  YYECVADNPF 72
            Y CV +N  
Sbjct: 320 KYLCVVNNSV 329

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 63.8 bits (155), Expect = 7e-14
 Identities = 16/70 (22%), Positives = 19/70 (27%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
                  C A G P P I W + D                G          D   +  A 
Sbjct: 54  STGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 113

Query: 63  YYECVADNPF 72
            Y C+A N F
Sbjct: 114 VYACLARNQF 123

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 62.6 bits (152), Expect = 2e-13
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
            G      C A+GFP+P +TW K   +             +        + +D   + + 
Sbjct: 728 QGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEE--GTLHVDNIQKTNE 785

Query: 62  GYYECVADNP 71
           GYY C A N 
Sbjct: 786 GYYLCEAING 795

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 62.3 bits (151), Expect = 3e-13
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 5/74 (6%)

Query: 1   MLGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
            +G+ +T  C   G   P +I WT D   ++                  S + I+     
Sbjct: 632 QVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRG----SVLTIEAVEAS 687

Query: 60  DAGYYECVADNPFA 73
            AG + C A N   
Sbjct: 688 HAGNFTCHARNLAG 701

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 61.1 bits (148), Expect = 6e-13
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK- 59
           + G  +   C   G+P   I W +D+  L  ++  +V      N T+     I+   +  
Sbjct: 539 VAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFP----NGTL----IIENVERNS 590

Query: 60  DAGYYECVADNP 71
           D   Y CVA N 
Sbjct: 591 DQATYTCVAKNQ 602

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 59.6 bits (144), Expect = 2e-12
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 15/69 (21%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           GR   F C   G P   ++W KD   +               + ++    I+   ++D G
Sbjct: 358 GRPAVFTCQYTGNPIKTVSWMKDGKAIGH-----------SESVLR----IESVKKEDKG 402

Query: 63  YYECVADNP 71
            Y+C   N 
Sbjct: 403 MYQCFVRND 411

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 45.3 bits (107), Expect = 2e-07
 Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 7/79 (8%)

Query: 3   GRKITFFCMAE---GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
           G      C+           ++W  D+ E  F       ++ +  +    ++ I     +
Sbjct: 153 GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS---GELHIREVGPE 209

Query: 60  DA-GYYECVADNPFAIDRR 77
           D    Y+C   +    + R
Sbjct: 210 DGYKSYQCRTKHRLTGETR 228

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 72.9 bits (179), Expect = 2e-17
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G ++TF C A G P P I+W ++   +  ++ +       G+N   +++ +      D G
Sbjct: 209 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI----LKGSN---TELTVRNIINSDGG 261

Query: 63  YYECVADNPFAIDRRGFR 80
            Y C A N    D +   
Sbjct: 262 PYVCRATNKAGEDEKQAF 279

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 65.2 bits (159), Expect = 1e-14
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
            G      C     P P ++W   + E+T     +     L NN ++    I    + D 
Sbjct: 112 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFA--MLANNNLQ----ILNINKSDE 165

Query: 62  GYYECVADNP 71
           G Y C     
Sbjct: 166 GIYRCEGRVE 175

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 57.1 bits (138), Expect = 1e-11
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G    F C A G P     +     ++   +   V +       ++S++ I  A  +DAG
Sbjct: 19 GESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQK-----EGVRSRLTIYNANIEDAG 73

Query: 63 YYECVADNPF 72
           Y C A +  
Sbjct: 74 IYRCQATDAK 83

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 68.6 bits (168), Expect = 3e-17
 Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 9/71 (12%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIEL-TFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
                 C A G P P I+W K+            + E      T+    +I      D 
Sbjct: 23 DGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQE----QGTL----QIKNLRISDT 74

Query: 62 GYYECVADNPF 72
          G Y CVA +  
Sbjct: 75 GTYTCVATSSS 85

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 70.2 bits (172), Expect = 4e-17
 Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G+ +   C  EG   P I W KD   +       +    +        + +    + DAG
Sbjct: 17 GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIP---VSEQHWIGFLSLKSVERSDAG 73

Query: 63 YYECVADNPF 72
           Y C  ++  
Sbjct: 74 RYWCQVEDGG 83

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 47.1 bits (112), Expect = 3e-08
 Identities = 11/73 (15%), Positives = 18/73 (24%), Gaps = 15/73 (20%)

Query: 1   MLGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
                    C A G P P  I W +   ++                   S   ++     
Sbjct: 111 PPNAPFQLSCEAVGPPEPVTIVWWRGTTKI--------------GGPAPSPSVLNVTGVT 156

Query: 60  DAGYYECVADNPF 72
            +  + C A N  
Sbjct: 157 QSTMFSCEAHNLK 169

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 70.2 bits (172), Expect = 5e-17
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G ++TF C A G P P I+W ++   +  ++ +       G+N   +++ +      D G
Sbjct: 113 GEEMTFSCRASGSPEPAISWFRNGKLIEENEKYI----LKGSN---TELTVRNIINSDGG 165

Query: 63  YYECVADNPFAIDRRGFR 80
            Y C A N    D +   
Sbjct: 166 PYVCRATNKAGEDEKQAF 183

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 64.4 bits (157), Expect = 1e-14
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 2  LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           G      C     P P ++W   + E+T     +     L NN ++    I    + D 
Sbjct: 16 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFA--MLANNNLQ----ILNINKSDE 69

Query: 62 GYYECVADNP 71
          G Y C     
Sbjct: 70 GIYRCEGRVE 79

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 71.3 bits (175), Expect = 7e-17
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G  +   C  +G P   ++W KD  EL   K +++           + + I      D G
Sbjct: 207 GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS-----ENFLTSIHILNVDSADIG 261

Query: 63  YYECVADNPFAIDRRGFR 80
            Y+C A N          
Sbjct: 262 EYQCKASNDVGSYTCVGS 279

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 69.0 bits (169), Expect = 6e-16
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
                + C   G P   + W KD+ E+     F++   F+ +    + +E+   + +D+G
Sbjct: 114 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS--FVESV---AVLEMYNLSVEDSG 168

Query: 63  YYECVADNPF 72
            Y C A N  
Sbjct: 169 DYTCEAHNAA 178

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 67.1 bits (164), Expect = 3e-15
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G   TF C   G     ITW KD+ E+     +++    + N      + +   T+ DAG
Sbjct: 20 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMT--LVENTAT---LTVLKVTKGDAG 74

Query: 63 YYECVADNPF 72
           Y C A N  
Sbjct: 75 QYTCYASNVA 84

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 67.8 bits (166), Expect = 7e-17
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G    F C  +G P P +TW +    L+     QV          KS  EI      D G
Sbjct: 29 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT-----TKYKSTFEISSVQASDEG 83

Query: 63 YYECVADNP 71
           Y  V +N 
Sbjct: 84 NYSVVVENS 92

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 67.8 bits (166), Expect = 7e-17
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
          G  +TF C   G P+P I W KD  +++    ++ +     G  +    +    +T  D 
Sbjct: 23 GMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS----LHTTASTLDDD 78

Query: 62 GYYECVADNP 71
          G Y  +A NP
Sbjct: 79 GNYTIMAANP 88

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 67.7 bits (166), Expect = 8e-17
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 8/70 (11%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G+     C   G P P ITW  +   + + +         G       + I  A  +D G
Sbjct: 26 GQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE----AGVAE----LHIQDALPEDHG 77

Query: 63 YYECVADNPF 72
           Y C+A+N  
Sbjct: 78 TYTCLAENAL 87

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 71.9 bits (176), Expect = 1e-16
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           M+   I+  C A+GFP P   W K     T  +   +++     +     + I  A  +D
Sbjct: 225 MVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVS---GTLIIKDAVVED 281

Query: 61  AGYYECVADNPF 72
           +G Y CV +N  
Sbjct: 282 SGKYLCVVNNSV 293

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 61.1 bits (148), Expect = 7e-13
 Identities = 17/72 (23%), Positives = 21/72 (29%), Gaps = 4/72 (5%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIEL--TFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
                 C A G P P I W + D           Q+     G          D   +  
Sbjct: 19 STGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISS--DGKLVFPPFRAEDYRQEVH 76

Query: 61 AGYYECVADNPF 72
          A  Y C+A N F
Sbjct: 77 AQVYACLARNQF 88

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 58.0 bits (140), Expect = 7e-12
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 15/71 (21%)

Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
            GR   F C   G P   ++W KD   +               + ++    I+   ++D 
Sbjct: 321 FGRPAVFTCQYTGNPIKTVSWMKDGKAIG-----------HSESVLR----IESVKKEDK 365

Query: 62  GYYECVADNPF 72
           G Y+C   N  
Sbjct: 366 GMYQCFVRNDR 376

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 46.9 bits (111), Expect = 7e-08
 Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 7/79 (8%)

Query: 3   GRKITFFCMAEGF---PRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
           G      C+   F       ++W  D+ E  F       ++ +  +    ++ I     +
Sbjct: 118 GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS---GELHIREVGPE 174

Query: 60  DA-GYYECVADNPFAIDRR 77
           D    Y+C   +    + R
Sbjct: 175 DGYKSYQCRTKHRLTGETR 193

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 71.9 bits (176), Expect = 1e-16
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
             G     +CM    P  +  + K+  ++  +   ++      +      +       +D
Sbjct: 225 KAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR---LLFKTTLPED 281

Query: 61  AGYYECVADNP 71
            G Y C  DN 
Sbjct: 282 EGVYTCEVDNG 292

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 64.9 bits (158), Expect = 2e-14
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G+ +T  C   G P P++ W+ +   L+  +   V      ++ +     I      D G
Sbjct: 324 GQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRA-TVT-----DSGLV----IKGVKNGDKG 373

Query: 63  YYECVADNP 71
           YY C A N 
Sbjct: 374 YYGCRATNE 382

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 59.2 bits (143), Expect = 3e-12
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 7/71 (9%)

Query: 3  GRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
                 C+ EG  +    +W KD     + ++           ++            D 
Sbjct: 21 NNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR--KDEGSLV----FLRPQASDE 74

Query: 62 GYYECVADNPF 72
          G+Y+C A+ P 
Sbjct: 75 GHYQCFAETPA 85

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 46.4 bits (110), Expect = 9e-08
 Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 5/74 (6%)

Query: 3   GRKITFFCM-AEGFPRPHITWTKDDIELTFHKYFQVHE---WFLGNNTIKSKMEIDPATQ 58
           GR     C+    +P+P ITW K       +      +       +  +     +     
Sbjct: 115 GRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFT-IVTKEDV 173

Query: 59  KDAGYYECVADNPF 72
            D   Y C A N  
Sbjct: 174 SDIYKYVCTAKNAA 187

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 69.8 bits (171), Expect = 1e-16
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 8/70 (11%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G  +   C A G P P+I W K+  ++            L +  ++    I+ + ++D G
Sbjct: 125 GHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS----LKDGFLQ----IENSREEDQG 176

Query: 63  YYECVADNPF 72
            YECVA+N  
Sbjct: 177 KYECVAENSM 186

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 61.7 bits (150), Expect = 2e-13
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 2  LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPAT-QKD 60
          +G   +F+C A G P P I W K+  +++  +    +        I   + I+P    +D
Sbjct: 20 VGGVASFYCAARGDPPPSIVWRKNGKKVSGTQ--SRYTVLEQPGGISI-LRIEPVRAGRD 76

Query: 61 AGYYECVADNPF 72
             YECVA+N  
Sbjct: 77 DAPYECVAENGV 88

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 67.5 bits (165), Expect = 1e-16
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 2  LGRKITFFCMAEGFPRPHITWTKDDIEL-TFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
          +       C+A G P P I W KD + + T     +  E    N      ++I  A   D
Sbjct: 22 VDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE----NGV----LQIRYAKLGD 73

Query: 61 AGYYECVADNPF 72
           G Y C+A  P 
Sbjct: 74 TGRYTCIASTPS 85

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 66.7 bits (163), Expect = 1e-16
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 14/69 (20%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G  +T  C     P P I W KD + L              +  +     +     +D G
Sbjct: 25 GGTVTLTCEVPAQPSPQIHWMKDGVPLP----------LPPSPVLI----LPEIGPQDQG 70

Query: 63 YYECVADNP 71
           Y CVA + 
Sbjct: 71 TYSCVATHS 79

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 70.7 bits (173), Expect = 2e-16
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
             G+ +   C   G P P ++W K++  L    +  +               I+  +  D
Sbjct: 235 QEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAY----FTINGVSTAD 290

Query: 61  AGYYECVADNPF 72
           +G Y  V  N +
Sbjct: 291 SGKYGLVVKNKY 302

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 57.2 bits (138), Expect = 1e-11
 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 10/71 (14%)

Query: 3  GRKITFFCMAEGF-PRPHITWTKDDIELTF-HKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
             +   C         HI W KD+ E++   K+                + I   ++KD
Sbjct: 21 ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDG--------ICTLLITEFSKKD 72

Query: 61 AGYYECVADNP 71
          AG YE +  + 
Sbjct: 73 AGIYEVILKDD 83

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 56.8 bits (137), Expect = 2e-11
 Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 5/65 (7%)

Query: 8   FFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV 67
           +  +        + W+ +   + +    +      G       ++I+  T  D G Y   
Sbjct: 128 YSFVTYYVEDLKVNWSHNGSAIRYSDRVKTG--VTGEQ---IWLQINEPTPNDKGKYVME 182

Query: 68  ADNPF 72
             +  
Sbjct: 183 LFDGK 187

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 67.0 bits (164), Expect = 2e-16
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G  +  F    G      TW K   ++   ++ +V      N+   SK+ I  A Q+  G
Sbjct: 22 GESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVE-----NSENGSKLTILAARQEHCG 76

Query: 63 YYECVADNPF 72
           Y  + +N  
Sbjct: 77 CYTLLVENKL 86

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 69.1 bits (169), Expect = 2e-16
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           ++G+ +T  C A G P P I W K    +                 +K    I     +D
Sbjct: 126 LMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIST-----SGAVLK----IFNIQLED 176

Query: 61  AGYYECVADNP 71
            G YEC A+N 
Sbjct: 177 EGIYECEAENI 187

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 46.0 bits (109), Expect = 9e-08
 Identities = 10/75 (13%), Positives = 18/75 (24%), Gaps = 13/75 (17%)

Query: 3  GRKITFFCMAEGFPRP--HITWTKDDIELTF---HKYFQVHEWFLGNNTIKSKMEIDPAT 57
          G+ +   C             W  ++  +      + F               + I    
Sbjct: 23 GKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT--------NGNLYIANVE 74

Query: 58 QKDAGYYECVADNPF 72
            D G Y C   +P 
Sbjct: 75 ASDKGNYSCFVSSPS 89

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 66.2 bits (162), Expect = 3e-16
 Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 5/69 (7%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G          G P P  TWT  D          V        +  + +    A + D+G
Sbjct: 17 GFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVD-----AKSSTTSIFFPSAKRADSG 71

Query: 63 YYECVADNP 71
           Y+    N 
Sbjct: 72 NYKLKVKNE 80

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 66.3 bits (162), Expect = 3e-16
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
             + F C A G P P + W K+  E         ++    + ++     ++     D G
Sbjct: 23 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSL----IMESVVPSDKG 78

Query: 63 YYECVADNP 71
           Y CV +N 
Sbjct: 79 NYTCVVENE 87

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 68.7 bits (168), Expect = 3e-16
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
             G+ +   C   G P P ++W K++  L    +  +               I+  +  D
Sbjct: 130 QEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAY----FTINGVSTAD 185

Query: 61  AGYYECVADNPF 72
           +G Y  V  N +
Sbjct: 186 SGKYGLVVKNKY 197

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 56.4 bits (136), Expect = 1e-11
 Identities = 8/71 (11%), Positives = 21/71 (29%), Gaps = 6/71 (8%)

Query: 3  GRKITFFC-MAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
             I  +  +        + W+ +   + +    +      G    +  ++I+  T  D 
Sbjct: 17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTG--VTGE---QIWLQINEPTPNDK 71

Query: 62 GYYECVADNPF 72
          G Y     +  
Sbjct: 72 GKYVMELFDGK 82

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 65.8 bits (161), Expect = 3e-16
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          GR         G P P ++W  +   +      ++     G ++    +  +     DAG
Sbjct: 20 GRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS----LIFEVVRASDAG 75

Query: 63 YYECVADNP 71
           Y CVA N 
Sbjct: 76 AYACVAKNR 84

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 66.3 bits (162), Expect = 4e-16
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
          G  +   C     P P + W +++  + F+     +++    +NT +  + I    +KDA
Sbjct: 30 GDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQ----DNTGRVTLLIKDVNKKDA 85

Query: 62 GYYECVADNPF 72
          G+Y   A N  
Sbjct: 86 GWYTVSAVNEA 96

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 68.2 bits (167), Expect = 4e-16
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G ++       G P P + + +D  E+     FQ+             + I  A  +D+G
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQIS-----QEGDLYSLLIAEAYPEDSG 172

Query: 63  YYECVADNPF 72
            Y   A N  
Sbjct: 173 TYSVNATNSV 182

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 66.7 bits (163), Expect = 1e-15
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
          + G   TF     GFP P ++W +D   ++      V   F       +K+ I   T+ +
Sbjct: 18 LEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR---AKLTIPAVTKAN 74

Query: 61 AGYYECVADNP 71
          +G Y   A N 
Sbjct: 75 SGRYSLKATNG 85

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 65.8 bits (161), Expect = 4e-16
 Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 4/70 (5%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G+ +      +G P+P ++W ++   +   +     E   G       + I  A + DAG
Sbjct: 20 GQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR----LRILAAERGDAG 75

Query: 63 YYECVADNPF 72
          +Y C A N +
Sbjct: 76 FYTCKAVNEY 85

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 65.9 bits (161), Expect = 4e-16
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G+     C   G P P ++W  D   +      ++     G ++    + I+P T +DAG
Sbjct: 24 GKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHS----LIIEPVTSRDAG 79

Query: 63 YYECVADNP 71
           Y C+A N 
Sbjct: 80 IYTCIATNR 88

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 70.2 bits (172), Expect = 4e-16
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           + G  +   C  +G P   ++W KD  EL   K +++           + + I      D
Sbjct: 397 LKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMS-----ENFLTSIHILNVDSAD 451

Query: 61  AGYYECVADNPF 72
            G Y+C A N  
Sbjct: 452 IGEYQCKASNDV 463

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 64.4 bits (157), Expect = 4e-14
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 5/69 (7%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G   TF C   G     ITW KD+ E+     +++    + N      + +   T+ DAG
Sbjct: 212 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMT--LVENTAT---LTVLKVTKGDAG 266

Query: 63  YYECVADNP 71
            Y C A N 
Sbjct: 267 QYTCYASNV 275

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 62.5 bits (152), Expect = 2e-13
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
                + C   G P   + W KD+ E+     F++   F+ +    + +E+   + +D+G
Sbjct: 306 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS--FVESV---AVLEMYNLSVEDSG 360

Query: 63  YYECVADNP 71
            Y C A N 
Sbjct: 361 DYTCEAHNA 369

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 62.5 bits (152), Expect = 2e-13
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G  IT  C  +G P   I W K+  +L     +++   F  N    + + I+     D G
Sbjct: 20 GEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQ--FKNNV---ASLVINKVDHSDVG 74

Query: 63 YYECVADNPF 72
           Y C A+N  
Sbjct: 75 EYTCKAENSV 84

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 59.4 bits (144), Expect = 3e-12
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 6/71 (8%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           G ++      EG     + W KD  E+        +       +   + ++   A   +A
Sbjct: 492 GEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISY-----SENIATLQFSRAEPANA 546

Query: 62  GYYECVADNPF 72
           G Y C   N  
Sbjct: 547 GKYTCQIKNEA 557

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 56.7 bits (137), Expect = 2e-11
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G  + F C   G     ++W KD   L      Q    F+ N    + ++I    Q   G
Sbjct: 116 GFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTS--FIHNV---ATLQILQTDQSHVG 170

Query: 63  YYECVADNPF 72
            Y C A NP 
Sbjct: 171 QYNCSASNPL 180

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 65.8 bits (161), Expect = 5e-16
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           +G  I   C A G P P I W KD+  L       + +   GN      + I    ++D
Sbjct: 23 SIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD---GNRN----LTIRRVRKED 75

Query: 61 AGYYECVADNP 71
           G Y C A + 
Sbjct: 76 EGLYTCQACSV 86

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 65.5 bits (160), Expect = 6e-16
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 10/70 (14%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G  +   C         I W +D ++L      ++    +         E+  +   D+G
Sbjct: 18 GDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEV---------EVQDSVPADSG 67

Query: 63 YYECVADNPF 72
           Y CV  +P 
Sbjct: 68 LYACVTSSPS 77

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 66.0 bits (161), Expect = 6e-16
 Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNN--TIKSKMEIDPATQKD 60
          G   T  C AEG P P I W K    +   K        L  +      ++     ++ D
Sbjct: 24 GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPD 83

Query: 61 AGYYECVADNPF 72
           G Y CVA N  
Sbjct: 84 EGVYVCVARNYL 95

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 69.1 bits (169), Expect = 6e-16
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 11/72 (15%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           M G  +   C+A G P P++ W +   +LT      V     G N ++          KD
Sbjct: 218 MPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV-----GRNVLEL------TDVKD 266

Query: 61  AGYYECVADNPF 72
           +  Y CVA +  
Sbjct: 267 SANYTCVAMSSL 278

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 64.1 bits (156), Expect = 4e-14
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPA-TQKDA 61
          G   +F C A G P+P +TW K   ++   ++  +             + I P  T +D 
Sbjct: 21 GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV----LRIQPLRTPRDE 76

Query: 62 GYYECVADNPF 72
            YECVA N  
Sbjct: 77 NVYECVAQNSV 87

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 62.5 bits (152), Expect = 2e-13
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIEL---TFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
             R  T  C A G P P ITW KD + +     +   +     L +  ++    I+ + +
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ----LRSGALQ----IESSEE 173

Query: 59  KDAGYYECVADNP 71
            D G YECVA N 
Sbjct: 174 TDQGKYECVATNS 186

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 67.5 bits (165), Expect = 8e-16
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
            R  T  C A G P P ITW KD + +         +     +     ++I+ + + D G
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESI--GALQIEQSEESDQG 180

Query: 63  YYECVADNPF 72
            YECVA N  
Sbjct: 181 KYECVATNSA 190

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 61.0 bits (148), Expect = 3e-13
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPA-TQKDA 61
          G   +F C A G PRP I W K   +++  ++  +      ++   S + I P  T +D 
Sbjct: 21 GGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEF----DDGSGSVLRIQPLRTPRDE 76

Query: 62 GYYECVADNPF 72
            YECVA N  
Sbjct: 77 AIYECVASNNV 87

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 68.7 bits (168), Expect = 1e-15
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
               I F C   G P P + W K+   +    YFQ+           S + I    + D 
Sbjct: 326 ESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG--------GSNLRILGVVKSDE 377

Query: 62  GYYECVADNPFAIDRR 77
           G+Y+CVA+N     + 
Sbjct: 378 GFYQCVAENEAGNAQS 393

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 67.6 bits (165), Expect = 3e-15
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 11/79 (13%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDD--IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
           + G+     C   G+P P  TW + +  I+L   KY       LG + +     I   T 
Sbjct: 234 IEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSL-----LGGSNL----LISNVTD 284

Query: 59  KDAGYYECVADNPFAIDRR 77
            D+G Y CV          
Sbjct: 285 DDSGTYTCVVTYKNENISA 303

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 61.0 bits (148), Expect = 7e-13
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 1   MLGRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
           M G  +   C AE     P I W KD + L      +  +   G+  I   +      + 
Sbjct: 34  MRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLI-QNILHSRHHKP 92

Query: 60  DAGYYECVADNPFA 73
           D G Y+C A    +
Sbjct: 93  DEGLYQCEASLGDS 106

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 58.7 bits (142), Expect = 5e-12
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 11/72 (15%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKY---FQVHEWFLGNNTIKSKMEIDPATQK 59
           G  +   C   G P P I W K+  +L          V      +  +    +I      
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLP----SGAL----QISRLQPG 187

Query: 60  DAGYYECVADNP 71
           D+G Y C A NP
Sbjct: 188 DSGVYRCSARNP 199

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 65.1 bits (159), Expect = 1e-15
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G ++      +G PRP + WTK    L   +   VH      +T+     +  A + D+G
Sbjct: 39  GEQLNLVVPFQGKPRPQVVWTKGGAPLDTSR---VHVRTSDFDTV---FFVRQAARSDSG 92

Query: 63  YYECVADNPF 72
            YE       
Sbjct: 93  EYELSVQIEN 102

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 67.2 bits (164), Expect = 2e-15
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
             + F C A G P P + W K+  E         ++    + ++     ++     D G
Sbjct: 34 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVVPSDKG 89

Query: 63 YYECVADNP 71
           Y CV +N 
Sbjct: 90 NYTCVVENE 98

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 64.5 bits (157), Expect = 1e-14
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHK------YFQVHEWFLGNNTIKSKMEID 54
           ++G  + F C      +PHI W K   +           Y +V +    N++    + + 
Sbjct: 131 VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALF 190

Query: 55  PATQKDAGYYECVADNPF 72
             T+ DAG Y C   N  
Sbjct: 191 NVTEADAGEYICKVSNYI 208

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 68.4 bits (167), Expect = 2e-15
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           + G  +   C+A G P P I W K   +L   K          N      + I   +++D
Sbjct: 235 LRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFE----NFNKA----LRITNVSEED 286

Query: 61  AGYYECVADNPFAIDRR 77
           +G Y C+A N     R 
Sbjct: 287 SGEYFCLASNKMGSIRH 303

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 65.3 bits (159), Expect = 2e-14
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
              I   C A+G P P   WT++       K  +V      + T+          ++  G
Sbjct: 32  RDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVS-MRRRSGTLVIDFRSGGRPEEYEG 90

Query: 63  YYECVADNPF 72
            Y+C A N F
Sbjct: 91  EYQCFARNKF 100

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 63.7 bits (155), Expect = 7e-14
 Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 6/70 (8%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G      C A G P+P + W  +   L         E  +  +TI               
Sbjct: 327 GEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNRE--VAGDTII----FRDTQISSRA 380

Query: 63  YYECVADNPF 72
            Y+C   N  
Sbjct: 381 VYQCNTSNEH 390

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 48.7 bits (116), Expect = 1e-08
 Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 13/74 (17%)

Query: 3   GRKITFFCMA-EGFPRPHITWTKDDIELTF--HKYFQVHEWFLGNNTIKSKMEIDPATQK 59
           G  +T  C    G P P I W    +E      +  Q H    G+      +       +
Sbjct: 131 GAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHN---GD------LYFSNVMLQ 181

Query: 60  DA-GYYECVADNPF 72
           D    Y C A   F
Sbjct: 182 DMQTDYSCNARFHF 195

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 65.3 bits (159), Expect = 2e-15
 Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G    F C  EG+P P + W KDD  +   ++FQ+     GN +    + I      D  
Sbjct: 56  GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS----LTISEVCGDDDA 111

Query: 63  YYECVADNP 71
            Y C A N 
Sbjct: 112 KYTCKAVNS 120

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 68.0 bits (166), Expect = 2e-15
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 11/71 (15%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           + G+ +T  C A G P P I W K D   T         W      +     I     +D
Sbjct: 220 LTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK-------WLSSEPLL----HIQNVDFED 268

Query: 61  AGYYECVADNP 71
            G YEC A+N 
Sbjct: 269 EGTYECEAENI 279

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 67.2 bits (164), Expect = 4e-15
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G  + + C+A G PRP + W +D   L      +V         ++          +D+G
Sbjct: 309 GSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS-----GGELR----FSKLVLEDSG 359

Query: 63  YYECVADNP 71
            Y+CVA+N 
Sbjct: 360 MYQCVAENK 368

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 61.4 bits (149), Expect = 4e-13
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
            K+T  C A   P     W  +  EL      +     L    +   +  +P   KDAG
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYR---LVAGDL---VISNPVKAKDAG 75

Query: 63 YYECVADNPF 72
           Y+CVA N  
Sbjct: 76 SYQCVATNAR 85

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 6/71 (8%)

Query: 3   GRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           G  + F C     +P     W  ++         +        N     + I      D 
Sbjct: 116 GWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN-----LYIAKTEASDL 170

Query: 62  GYYECVADNPF 72
           G Y C A +  
Sbjct: 171 GNYSCFATSHI 181

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 65.0 bits (158), Expect = 2e-15
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFH--------KYFQVHEWFLGNNTIKSKMEID 54
           G  +   C A G P P I W  +               +  +VH     +    S + ID
Sbjct: 36  GGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISID 95

Query: 55  PATQKDAGYYECVADN 70
              ++D G YEC A N
Sbjct: 96  TLVEEDTGTYECRASN 111

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 66.9 bits (163), Expect = 2e-15
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
             + F C A G P P I+W K+  E          +      ++     ++     D G
Sbjct: 30 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLV----MESVVPSDRG 85

Query: 63 YYECVADNP 71
           Y CV +N 
Sbjct: 86 NYTCVVENK 94

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 60.7 bits (147), Expect = 5e-13
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 7/79 (8%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDD------IELTFHKYFQVHEWFLGNNTIK-SKMEI 53
           +LG  + F C      +PHI W K        +      Y  V + ++  +     ++ +
Sbjct: 127 VLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRL 186

Query: 54  DPATQKDAGYYECVADNPF 72
              +++D G Y C A N  
Sbjct: 187 ANVSERDGGEYLCRATNFI 205

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 66.4 bits (162), Expect = 2e-15
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
            G ++   C    +P   I+W +D   L    Y  +    + N    S +E+ P ++ D
Sbjct: 31 WEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIK---IYNTPSASYLEVTPDSEND 87

Query: 61 AGYYECVADNPF 72
           G Y C A N  
Sbjct: 88 FGNYNCTAVNRI 99

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 66.4 bits (162), Expect = 3e-15
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 14/72 (19%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
          + G+ +   C A G P     W K + E+             GN    S++  +    KD
Sbjct: 31 LAGQFVKLCCRATGHPFVQYQWFKMNKEIP-----------NGNT---SELIFNAVHVKD 76

Query: 61 AGYYECVADNPF 72
          AG+Y C  +N F
Sbjct: 77 AGFYVCRVNNNF 88

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 62.2 bits (151), Expect = 1e-13
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 14/71 (19%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           M G  +   C+A G P PH  W K+++ LT              +  K    +     + 
Sbjct: 131 MPGSTLVLQCVAVGSPIPHYQWFKNELPLT--------------HETKKLYMVPYVDLEH 176

Query: 61  AGYYECVADNP 71
            G Y C   N 
Sbjct: 177 QGTYWCHVYND 187

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 67.9 bits (165), Expect = 3e-15
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G  I   C A G P P I W KD+  L       + +   GN  +     I    ++D G
Sbjct: 681 GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD---GNRNL----TIRRVRKEDEG 733

Query: 63  YYECVADNPFAIDRR 77
            Y C A +     + 
Sbjct: 734 LYTCQACSVLGCAKV 748

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 63.2 bits (153), Expect = 1e-13
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           +G ++       G+P P I W K+ I L  +   +              + I   +++D 
Sbjct: 344 VGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK----------AGHVLTIMEVSERDT 393

Query: 62  GYYECVADNPFAIDRR 77
           G Y  +  NP + +++
Sbjct: 394 GNYTVILTNPISKEKQ 409

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 57.5 bits (138), Expect = 1e-11
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 15/85 (17%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK-------------- 48
              ++ +C A+     ++TW K   +       ++      N                  
Sbjct: 564 QESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTND 623

Query: 49  -SKMEIDPATQKDAGYYECVADNPF 72
              ME+  A+ +D G Y C+A +  
Sbjct: 624 ILIMELKNASLQDQGDYVCLAQDRK 648

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 57.1 bits (137), Expect = 2e-11
 Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 5/75 (6%)

Query: 3   GRKITFFCMAEGFPRPHITWTKD-----DIELTFHKYFQVHEWFLGNNTIKSKMEIDPAT 57
           G K+   C A       I +  +                  +         S + ID  T
Sbjct: 239 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 298

Query: 58  QKDAGYYECVADNPF 72
           + D G Y C A +  
Sbjct: 299 RSDQGLYTCAASSGL 313

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 49.8 bits (118), Expect = 7e-09
 Identities = 20/109 (18%), Positives = 28/109 (25%), Gaps = 29/109 (26%)

Query: 1   MLGRKITFFCMAEGFPRP-HITWTKDDIELTFHK--------------YFQVHEWFLGNN 45
             G   T  C     P P HI W     E   ++               ++  E F G N
Sbjct: 436 QYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGN 495

Query: 46  TI--------------KSKMEIDPATQKDAGYYECVADNPFAIDRRGFR 80
            I              K+   +       +  Y+C A N      R   
Sbjct: 496 KIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVIS 544

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 47.8 bits (113), Expect = 3e-08
 Identities = 8/70 (11%), Positives = 13/70 (18%), Gaps = 6/70 (8%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
              +   C   G       W  +                  +      + I      D G
Sbjct: 46  NTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTECS----DGLFCKTLTIPKVIGNDTG 99

Query: 63  YYECVADNPF 72
            Y+C      
Sbjct: 100 AYKCFYRETD 109

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 9/72 (12%), Positives = 17/72 (23%), Gaps = 14/72 (19%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTI----KSKMEIDPATQ 58
            + +   C+       +++             +    +    N I    K    I     
Sbjct: 143 NKTVVIPCLGSI-SNLNVSL---------CARYPEKRFVPDGNRISWDSKKGFTIPSYMI 192

Query: 59  KDAGYYECVADN 70
             AG   C A  
Sbjct: 193 SYAGMVFCEAKI 204

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 67.1 bits (164), Expect = 3e-15
 Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 2  LGRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKD 60
               T  C   G P+P + W +   E+      +++ E+  G      ++ I   T  D
Sbjct: 18 YQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY----HQLIIASVTDDD 73

Query: 61 AGYYECVADNPF 72
          A  Y+  A N  
Sbjct: 74 ATVYQVRATNQG 85

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 63.2 bits (154), Expect = 8e-14
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 4/72 (5%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           + G  ++      G P P ITW K    +  + ++QV        +  S +  +   +KD
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV----TRSFTSLVFPNGVERKD 172

Query: 61  AGYYECVADNPF 72
           AG+Y   A N F
Sbjct: 173 AGFYVVCAKNRF 184

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 63.5 bits (155), Expect = 3e-15
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
               F   A G PRP   WTKD   +T    +++ E     +     +EI      D+G
Sbjct: 21 DSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE-----DKGGFFLEIHKTDTSDSG 75

Query: 63 YYECVADNPF 72
           Y C   N  
Sbjct: 76 LYTCTVKNSA 85

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 65.2 bits (159), Expect = 4e-15
 Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 6/71 (8%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
             G      C       P I W     ++   K  +     L NN ++    I    + D
Sbjct: 113 KEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFI--VLSNNYLQ----IRGIKKTD 166

Query: 61  AGYYECVADNP 71
            G Y C     
Sbjct: 167 EGTYRCEGRIL 177

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 57.9 bits (140), Expect = 3e-12
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 2  LGRKITFFCMAEGFPR-PHITWTKDD-IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
          +G    F C   G  +   I+W   +  +L+ ++      W   ++   S + I  A   
Sbjct: 16 VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS---STLTIYNANID 72

Query: 60 DAGYYECVADNP 71
          DAG Y+CV    
Sbjct: 73 DAGIYKCVVTAE 84

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 65.7 bits (160), Expect = 4e-15
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
              T  C  EG P P I W KD   ++ ++  + H     +  +     +    ++D G
Sbjct: 24 NEPATLNCKVEGKPEPTIEWFKDGEPVSTNE-KKSHRVQFKDGALFFYRTMQGKKEQDGG 82

Query: 63 YYECVADNPF 72
           Y CVA N  
Sbjct: 83 EYWCVAKNRV 92

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 58.7 bits (142), Expect = 2e-12
 Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 1/75 (1%)

Query: 3   GRKITFFC-MAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           G      C   +G P P + W KD + L   K                 + I      D 
Sbjct: 123 GETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDE 182

Query: 62  GYYECVADNPFAIDR 76
           G Y+C+A N      
Sbjct: 183 GNYKCIAQNLVGTRE 197

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 63.8 bits (155), Expect = 4e-15
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 2/73 (2%)

Query: 7  TFFCMAEGFPRPHITWTKDDIELTF--HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY 64
                +G P P + W  +   L      + +  E           + ++  T  + G Y
Sbjct: 19 CIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNY 78

Query: 65 ECVADNPFAIDRR 77
            +A NPF     
Sbjct: 79 TLLAANPFGQASA 91

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 65.8 bits (160), Expect = 5e-15
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 4/80 (5%)

Query: 2   LGRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK---SKMEIDPAT 57
           +G +    C   +G P    +W KD I +      +   +   + TI      +  DP T
Sbjct: 118 IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT 177

Query: 58  QKDAGYYECVADNPFAIDRR 77
             D+G Y C A N +    R
Sbjct: 178 AFDSGEYYCQAQNGYGTAMR 197

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 65.0 bits (158), Expect = 8e-15
 Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 3/72 (4%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK---SKMEIDPATQK 59
             I   C   GF  P + W       T    +         + +    S +     T+K
Sbjct: 16 NESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRK 75

Query: 60 DAGYYECVADNP 71
          D G Y C+    
Sbjct: 76 DNGEYTCMVSEE 87

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 65.5 bits (160), Expect = 5e-15
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           LG      C   G P P I W +   EL   + +++       +     + +    Q+D
Sbjct: 20 KLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSS-----DGRTHTLTVMTEEQED 74

Query: 61 AGYYECVADNP 71
           G Y C+A N 
Sbjct: 75 EGVYTCIATNE 85

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 65.1 bits (159), Expect = 6e-15
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 6/71 (8%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK-DA 61
           G  +    M  G P P +TW      L   +   +      N    + + +    +K  A
Sbjct: 118 GSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIE-----NTEHYTHLVMKNVQRKTHA 172

Query: 62  GYYECVADNPF 72
           G Y+    N F
Sbjct: 173 GKYKVQLSNVF 183

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 62.7 bits (153), Expect = 5e-15
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 14/72 (19%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
          M G  +   C+A G P PH  W K+++ LT              +  K    +     + 
Sbjct: 16 MPGSTLVLQCVAVGSPIPHYQWFKNELPLT--------------HETKKLYMVPYVDLEH 61

Query: 61 AGYYECVADNPF 72
           G Y C   N  
Sbjct: 62 QGTYWCHVYNDR 73

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 65.4 bits (159), Expect = 6e-15
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 3/72 (4%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK---SKMEIDPATQK 59
             +   C   GF  P + W  D  + T    +         + +    + +     T++
Sbjct: 19 NNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE 78

Query: 60 DAGYYECVADNP 71
          D G Y C+    
Sbjct: 79 DTGTYTCMVSEE 90

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 64.6 bits (157), Expect = 1e-14
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 1   MLGRKITFFCMA-EGFPRPHITWTKDDIELTF--HKYFQVHEWFLGNNTIKSKMEIDPAT 57
            +G +    C   +G P    TW KD I +                 N    ++  DP +
Sbjct: 120 TIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLS 179

Query: 58  QKDAGYYECVADNPF 72
             D G Y C A N +
Sbjct: 180 ASDTGEYSCEARNGY 194

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 66.8 bits (163), Expect = 6e-15
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 3/72 (4%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
             G  I   C  +  P   I W +D + L       +  +  G       +EI P +  D
Sbjct: 113 WEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK---MILEIAPTSDND 169

Query: 61  AGYYECVADNPF 72
            G Y C A N  
Sbjct: 170 FGRYNCTATNHI 181

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 65.6 bits (160), Expect = 1e-14
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 2  LGRKITFFCMAEGFPRPHITWTKDD--IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
             ++T  C AEG P P ITW +       T           +      S + I      
Sbjct: 14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73

Query: 60 DAGYYECVADNPF 72
          D+G Y+C A +  
Sbjct: 74 DSGRYDCEAASRI 86

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 66.2 bits (161), Expect = 9e-15
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
              + F C A G P P I+W K+  E          +      ++     ++     D G
Sbjct: 138 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLV----MESVVPSDRG 193

Query: 63  YYECVADNP 71
            Y CV +N 
Sbjct: 194 NYTCVVENK 202

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 63.5 bits (154), Expect = 9e-14
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 8/78 (10%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDD------IELTFHKYFQVHEWFLGNNTIK--SKMEID 54
           G  + F C      +PHI W K        +      Y  V +    N T K    + + 
Sbjct: 237 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLH 296

Query: 55  PATQKDAGYYECVADNPF 72
             T +DAG Y C+A N  
Sbjct: 297 NVTFEDAGEYTCLAGNSI 314

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 60.8 bits (147), Expect = 7e-13
 Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 10/71 (14%)

Query: 3  GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
          G  +   C    G P     W KD   L   +   V    L         ++  A+ +D+
Sbjct: 23 GDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRL---------QVLNASHEDS 73

Query: 62 GYYECVADNPF 72
          G Y C      
Sbjct: 74 GAYSCRQRLTQ 84

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 62.9 bits (153), Expect = 9e-15
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 1/66 (1%)

Query: 7  TFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC 66
              +  G P P + W  +   L   K   V   +      +  +  +  T  + G Y  
Sbjct: 24 CIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY-YQEGEISEGCLLFNKPTHYNNGNYTL 82

Query: 67 VADNPF 72
          +A NP 
Sbjct: 83 IAKNPL 88

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 66.0 bits (161), Expect = 1e-14
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           +   + + C A G P+P   W K+   L      Q+        T+     I      DA
Sbjct: 309 MEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE-----QGTLN----ITIVNLSDA 359

Query: 62  GYYECVADNP 71
           G Y+CVA+N 
Sbjct: 360 GMYQCVAENK 369

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 63.7 bits (155), Expect = 8e-14
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 8/71 (11%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
             G  +   C A G P P I W + D +    K  +       N      +EI    Q+D
Sbjct: 218 EKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH----KSNGI----LEIPNFQQED 269

Query: 61  AGYYECVADNP 71
           AG YECVA+N 
Sbjct: 270 AGSYECVAENS 280

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 61.4 bits (149), Expect = 4e-13
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           +K+   C  +G P+PHI W  +  ++     F+     + + ++   +  +P   +DAG
Sbjct: 23 EKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYS---VVDGSL---LINNPNKTQDAG 76

Query: 63 YYECVADNPF 72
           Y+C+A N F
Sbjct: 77 TYQCIATNSF 86

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 52.9 bits (127), Expect = 5e-10
 Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 12/78 (15%)

Query: 3   GRKITFFCMA-EGFPRPHITWTKDDIELTF--HKYFQVHEWFLGNNTIKSKMEIDPATQK 59
           G+ +   C            W  ++        ++        GN      + I    + 
Sbjct: 117 GQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET---GN------LYIAKVEKS 167

Query: 60  DAGYYECVADNPFAIDRR 77
           D G Y CV  N     + 
Sbjct: 168 DVGNYTCVVTNTVTNHKV 185

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 61.7 bits (150), Expect = 1e-14
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 10/70 (14%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G  +   C         I W +D ++L      ++    +         E+  +   D+G
Sbjct: 24 GDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGEEV---------EVRDSIPADSG 73

Query: 63 YYECVADNPF 72
           Y CV  +P 
Sbjct: 74 LYACVTSSPS 83

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 62.2 bits (151), Expect = 2e-14
 Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 5/83 (6%)

Query: 2   LGRKITFFCMAEGFPRP-HITWTKDD--IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
            G K    C     P P  I W+  +  +E      + V         + S + I    +
Sbjct: 27  HGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET-ISTEEGVISTLTISNIVR 85

Query: 59  KD-AGYYECVADNPFAIDRRGFR 80
            D    Y C A N F  D    R
Sbjct: 86  ADFQTIYNCTAWNSFGSDTEIIR 108

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 63.3 bits (154), Expect = 3e-14
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEI-DPATQKD 60
            G+    +C + G+P P   W K +  +          +F+ N    +++ I +    +D
Sbjct: 106 EGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITED 165

Query: 61  AGYYECVADNP 71
            G YEC A N 
Sbjct: 166 PGEYECNATNS 176

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 56.4 bits (136), Expect = 1e-11
 Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 12/72 (16%)

Query: 2  LGRKITFFCMAEGFPRPHIT--WTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
              +T  C         +   WTK+ +ELT  +          N        I+    +
Sbjct: 17 SLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK------NASNME----YRINKPRAE 66

Query: 60 DAGYYECVADNP 71
          D+G Y CV    
Sbjct: 67 DSGEYHCVYHFV 78

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 60.6 bits (147), Expect = 5e-14
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 15/78 (19%)

Query: 3  GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKS--KMEIDPATQK 59
          G  +TF C A+   P   + WT+                 L +  +     + I      
Sbjct: 25 GADVTFICTAKSKSPAYTLVWTRLHNGK------------LPSRAMDFNGILTIRNVQPS 72

Query: 60 DAGYYECVADNPFAIDRR 77
          DAG Y C   N FA+D+ 
Sbjct: 73 DAGTYVCTGSNMFAMDQG 90

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 63.6 bits (154), Expect = 5e-14
 Identities = 16/75 (21%), Positives = 23/75 (30%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G  IT  C+  G    +  WT    E                  I+S + I  A  +D+G
Sbjct: 196 GENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSG 255

Query: 63  YYECVADNPFAIDRR 77
            Y C         + 
Sbjct: 256 TYTCNVTESVNDHQD 270

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 45.5 bits (107), Expect = 2e-07
 Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 10/81 (12%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
                 C         + W +   E               + T  S + +   T  D G
Sbjct: 15 SSTFVLTCSGSAP----VVWERMSQEPP------QEMAKAQDGTFSSVLTLTNLTGLDTG 64

Query: 63 YYECVADNPFAIDRRGFRTDY 83
           Y C  ++   ++    +  Y
Sbjct: 65 EYFCTHNDSRGLETDERKRLY 85

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 38.5 bits (89), Expect = 5e-05
 Identities = 9/68 (13%), Positives = 17/68 (25%), Gaps = 15/68 (22%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
             +IT  C     P+  +T  +   ++     +     F G                +  
Sbjct: 110 ITEITIPCRVTD-PQLVVTLHEKKGDVALPVPYDHQRGFSGIF--------------EDR 154

Query: 63  YYECVADN 70
            Y C    
Sbjct: 155 SYICKTTI 162

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 64.0 bits (155), Expect = 7e-14
 Identities = 10/72 (13%), Positives = 19/72 (26%), Gaps = 9/72 (12%)

Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
              +  F    + +P+   TWT         +    +            +      +   
Sbjct: 340 QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN---------GYSISKFCNHKHQP 390

Query: 62  GYYECVADNPFA 73
           G Y   A+N  A
Sbjct: 391 GEYIFHAENDDA 402

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 61.6 bits (149), Expect = 5e-13
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 3   GRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK-SKMEIDPATQKD 60
           G  +   C A        +TW  ++  L    YF++  +      I+     +    + D
Sbjct: 242 GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301

Query: 61  AGYYECVADNPF 72
            GYY C +    
Sbjct: 302 TGYYTCSSSKHP 313

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 61.3 bits (148), Expect = 5e-13
 Identities = 10/70 (14%), Positives = 19/70 (27%), Gaps = 6/70 (8%)

Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           +   IT   + +        W      L    +F +    + +  I         T+  A
Sbjct: 62  VSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILK------MTETQA 115

Query: 62  GYYECVADNP 71
           G Y     + 
Sbjct: 116 GEYLLFIQSE 125

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 54.3 bits (130), Expect = 2e-10
 Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 10/78 (12%)

Query: 3   GRKITFFCMAEGFPRPHITWTK-DDIELTFHKYFQVHEW-------FLGNNTIKSKMEID 54
                  C ++G+P P  TW K  D      +      W         G     S   ++
Sbjct: 422 ASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSST--LN 479

Query: 55  PATQKDAGYYECVADNPF 72
            +        +C A N  
Sbjct: 480 MSEAIKGFLVKCCAYNSL 497

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 49.3 bits (117), Expect = 1e-08
 Identities = 10/71 (14%), Positives = 18/71 (25%), Gaps = 9/71 (12%)

Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           +  +    C++E  P P + W   D +    K             +          +   
Sbjct: 153 MENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLH---------ELFG 203

Query: 62  GYYECVADNPF 72
               C A N  
Sbjct: 204 TDIRCCARNEL 214

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 62.5 bits (152), Expect = 7e-14
 Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 9/76 (11%)

Query: 2   LGRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           +G      C    G P P I+W KD   L            +    +     I    + D
Sbjct: 125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERIT----IRGGKLM----ITYTRKSD 176

Query: 61  AGYYECVADNPFAIDR 76
           AG Y CV  N      
Sbjct: 177 AGKYVCVGTNMVGERE 192

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 62.1 bits (151), Expect = 1e-13
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIEL-TFHKYFQVHEWFLGNNTIK-SKMEIDPATQKD 60
          G   T  C AEG P P I W K    + T     + H   L + ++   ++     ++ D
Sbjct: 24 GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPD 83

Query: 61 AGYYECVADNPF 72
           G Y CVA N  
Sbjct: 84 EGVYVCVARNYL 95

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 63.5 bits (154), Expect = 8e-14
 Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 3   GRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           G + T  C  +      + TW +++ +    + +        N   ++ + I  A   D+
Sbjct: 226 GEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDS 285

Query: 62  GYYECVADNPFAIDRR 77
           G + C A+N F     
Sbjct: 286 GVFMCYANNTFGSANV 301

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 63.1 bits (153), Expect = 1e-13
 Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 1/72 (1%)

Query: 1   MLGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
             G  +      E FP+P H  W   +   T             N    S++ +      
Sbjct: 326 NDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGT 385

Query: 60  DAGYYECVADNP 71
           + G Y  +  N 
Sbjct: 386 EGGTYTFLVSNS 397

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 61.6 bits (149), Expect = 4e-13
 Identities = 17/85 (20%), Positives = 24/85 (28%), Gaps = 7/85 (8%)

Query: 3   GRKITFFCMAEGFPRPHITWTK-------DDIELTFHKYFQVHEWFLGNNTIKSKMEIDP 55
                  C+A GFP P I W             +       ++        +  +  ID 
Sbjct: 421 LVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDS 480

Query: 56  ATQKDAGYYECVADNPFAIDRRGFR 80
           +  K  G  EC A N        F 
Sbjct: 481 SAFKHNGTVECKAYNDVGKTSAYFN 505

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 40.8 bits (95), Expect = 1e-05
 Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 17/71 (23%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G +I   C   G     + WT + ++ T             N   +++   + A   + G
Sbjct: 51  GDEIRLLCTDPG----FVKWTFEILDET-------------NENKQNEWITEKAEATNTG 93

Query: 63  YYECVADNPFA 73
            Y C   +  +
Sbjct: 94  KYTCTNKHGLS 104

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 59.6 bits (145), Expect = 1e-13
 Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 4/69 (5%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G    F     G P P   W K+ +++        +            + I   T +D+ 
Sbjct: 20 GSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE----LVIRDVTGEDSA 75

Query: 63 YYECVADNP 71
               A N 
Sbjct: 76 SIMVKAINI 84

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 62.4 bits (151), Expect = 2e-13
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 2/71 (2%)

Query: 3   GRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK-SKMEIDPATQKD 60
           G  +   C A        +TW  ++  L    YF++  +      I+     +    + D
Sbjct: 242 GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301

Query: 61  AGYYECVADNP 71
            GYY C +   
Sbjct: 302 TGYYTCSSSKH 312

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 61.2 bits (148), Expect = 6e-13
 Identities = 12/78 (15%), Positives = 21/78 (26%), Gaps = 9/78 (11%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
             +  F    + +P+   TWT         +            +I          +   G
Sbjct: 341 YEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG-----LDNGYSIS----KFCNHKHQPG 391

Query: 63  YYECVADNPFAIDRRGFR 80
            Y   A+N  A   + F 
Sbjct: 392 EYIFHAENDDAQFTKMFT 409

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 61.2 bits (148), Expect = 6e-13
 Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 6/69 (8%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
              IT   + +        W      L    +F +       N     M I   T+  AG
Sbjct: 63  SASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL------QNRGVVSMVILKMTETQAG 116

Query: 63  YYECVADNP 71
            Y     + 
Sbjct: 117 EYLLFIQSE 125

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 50.1 bits (119), Expect = 4e-09
 Identities = 10/76 (13%), Positives = 19/76 (25%), Gaps = 9/76 (11%)

Query: 2   LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           +  +    C++E  P P + W   D +    K             +          +   
Sbjct: 153 MENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLH---------ELFG 203

Query: 62  GYYECVADNPFAIDRR 77
               C A N    +  
Sbjct: 204 TDIRCCARNELGRECT 219

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 58.8 bits (143), Expect = 2e-13
 Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G+   F    +  P   + W  + +EL              N +    +EI      D+G
Sbjct: 23 GQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYT-----NTSGVLTLEILDCHTDDSG 77

Query: 63 YYECVADNP 71
           Y  V  N 
Sbjct: 78 TYRAVCTNY 86

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 60.4 bits (146), Expect = 4e-13
 Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 1/81 (1%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
              +T  C    FP PH+ W   +                 + ++   +      +    
Sbjct: 119 FSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAV-DLSLPKPWHL 177

Query: 63  YYECVADNPFAIDRRGFRTDY 83
              CV  N        + + Y
Sbjct: 178 PVTCVGKNDKEEAHGVYVSGY 198

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 40.0 bits (93), Expect = 1e-05
 Identities = 13/88 (14%), Positives = 22/88 (25%), Gaps = 19/88 (21%)

Query: 1  MLGRKITFFCMAE---GFPRPHITWTKD--------------DIELTFHKYFQVHEWFLG 43
           LG ++T           P   ++W K               D+      +    +    
Sbjct: 4  FLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRS 63

Query: 44 NNTIKSKMEIDPATQKDAGYYECVADNP 71
           NT    + +  A     G Y C     
Sbjct: 64 ANT--FFLVVTAANISHDGNYLCRMKLG 89

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 58.2 bits (141), Expect = 6e-13
 Identities = 11/70 (15%), Positives = 20/70 (28%), Gaps = 4/70 (5%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
            G   TF C         + W  D   L  ++  ++             + +     KD
Sbjct: 26 QEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDA----QPGGYHVLTLRQLALKD 81

Query: 61 AGYYECVADN 70
          +G     A +
Sbjct: 82 SGTIYFEAGD 91

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 58.5 bits (141), Expect = 7e-13
 Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 7/77 (9%)

Query: 3  GRKITFFCMAEGFP---RPHITWTKDDIELTFHK---YFQVHEWF-LGNNTIKSKMEIDP 55
          G  ITF    +      +P I W K        K   + Q+ E F   +     +M+I  
Sbjct: 22 GEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIK 81

Query: 56 ATQKDAGYYECVADNPF 72
          A    AG Y C      
Sbjct: 82 AKDNFAGNYRCEVTYKD 98

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 60.5 bits (146), Expect = 9e-13
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 3   GRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIK--SKMEIDPATQK 59
           G   T  C  +      +  W K + +       + + W  G+   +    + I  A   
Sbjct: 203 GDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVD 262

Query: 60  DAGYYECVADNPFAIDRR 77
           D+G + C A+N F     
Sbjct: 263 DSGVFMCYANNTFGSANV 280

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 45.5 bits (107), Expect = 2e-07
 Identities = 8/69 (11%), Positives = 12/69 (17%), Gaps = 8/69 (11%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDD-IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
                  C          +  + D   L     F  +       TI      +       
Sbjct: 106 DSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPK--AGITI-----KNVKRAYHR 158

Query: 62  GYYECVADN 70
               C A  
Sbjct: 159 LCVRCAAQR 167

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 38.9 bits (90), Expect = 4e-05
 Identities = 11/68 (16%), Positives = 18/68 (26%), Gaps = 16/68 (23%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G  ++  C+   F    + WT                        K++   + A     G
Sbjct: 27 GDTLSLTCIDPDF----VRWTFKTYFNEMV------------ENKKNEWIQEKAEATRTG 70

Query: 63 YYECVADN 70
           Y C   N
Sbjct: 71 TYTCSNSN 78

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 59.6 bits (144), Expect = 2e-12
 Identities = 12/72 (16%), Positives = 29/72 (40%), Gaps = 4/72 (5%)

Query: 3   GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
             ++ F+  AE       + +  ++ E+     +++H   +  NT   +M ++    +D 
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMH---IDRNTGIIEMFMEKLQDEDE 178

Query: 62  GYYECVADNPFA 73
           G Y     +  A
Sbjct: 179 GTYTFQLQDGKA 190

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 58.8 bits (142), Expect = 4e-12
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 8/71 (11%)

Query: 3   GRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
              +   C      +  HI W KD+ E++  +       F         + I   ++KDA
Sbjct: 236 ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHD----FKDGI---CTLLITEFSKKDA 288

Query: 62  GYYECVADNPF 72
           G YE +  +  
Sbjct: 289 GIYEVILKDDR 299

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 55.8 bits (134), Expect = 5e-11
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
             + F C  +  P+   +W+KD +        +V     GN   K+KM        D G
Sbjct: 18 VISLNFEC-DKMTPKSEFSWSKDYVSTEDSPRLEVES--KGN---KTKMTFKDLGMDDLG 71

Query: 63 YYECVADNP 71
           Y C   + 
Sbjct: 72 IYSCDVTDT 80

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 58.4 bits (141), Expect = 2e-12
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 3  GRKITFFCMAE-GFPRPHITWTKDDIEL----TFHKYFQVHEWFLGNNTIKSKMEIDPAT 57
          G   T  C  +     P + W +D   L    +      + E    +  + S++ I    
Sbjct: 17 GLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQ 76

Query: 58 QKDAGYYECVADNPF 72
            D G Y+C+     
Sbjct: 77 LSDTGQYQCLVFLGH 91

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 46.8 bits (111), Expect = 5e-08
 Identities = 11/72 (15%), Positives = 18/72 (25%), Gaps = 13/72 (18%)

Query: 1   MLGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
                    C A+G P P  + W +D + L                    +  +      
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPLA------------TAPGHGPQRSLHVPGLN 166

Query: 60  DAGYYECVADNP 71
               + C A N 
Sbjct: 167 KTSSFSCEAHNA 178

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 59.2 bits (143), Expect = 3e-12
 Identities = 12/75 (16%), Positives = 18/75 (24%), Gaps = 16/75 (21%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G  +   C +   P P  +W  + I                       + I   T  + G
Sbjct: 574 GANLNLSCHSASNPSPQYSWRINGIPQQHT----------------QVLFIAKITPNNNG 617

Query: 63  YYECVADNPFAIDRR 77
            Y C   N       
Sbjct: 618 TYACFVSNLATGRNN 632

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 59.2 bits (143), Expect = 3e-12
 Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 8/72 (11%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
                + F C  E        W  +   L      Q+     GN T    + +   T+ D
Sbjct: 480 EDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVSPRLQL---SNGNRT----LTLFNVTRND 531

Query: 61  AGYYECVADNPF 72
           A  Y C   N  
Sbjct: 532 ARAYVCGIQNSV 543

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 55.3 bits (133), Expect = 7e-11
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 8/70 (11%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
              + F C  E        W  ++  L      Q+     GN T+     +   T+ D  
Sbjct: 126 KDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSN---GNRTL----TLFNVTRNDTA 177

Query: 63  YYECVADNPF 72
            Y+C   NP 
Sbjct: 178 SYKCETQNPV 187

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 55.0 bits (132), Expect = 8e-11
 Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 8/69 (11%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
              +   C  E        W  ++  L      Q+      N T+     +   T+ D G
Sbjct: 304 EDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSN---DNRTL----TLLSVTRNDVG 355

Query: 63  YYECVADNP 71
            YEC   N 
Sbjct: 356 PYECGIQNE 364

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 53.8 bits (129), Expect = 2e-10
 Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 16/69 (23%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G  ++  C A   P    +W  D                     +     I   T+K++G
Sbjct: 396 GVNLSLSCHAASNPPAQYSWLIDGNIQQ------------HTQEL----FISNITEKNSG 439

Query: 63  YYECVADNP 71
            Y C A+N 
Sbjct: 440 LYTCQANNS 448

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 53.0 bits (127), Expect = 4e-10
 Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 16/75 (21%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G  +   C A   P    +W  +               F  +     ++ I   T  ++G
Sbjct: 218 GENLNLSCHAASNPPAQYSWFVNGT-------------FQQST---QELFIPNITVNNSG 261

Query: 63  YYECVADNPFAIDRR 77
            Y C A N      R
Sbjct: 262 SYTCQAHNSDTGLNR 276

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 53.0 bits (127), Expect = 5e-10
 Identities = 10/89 (11%), Positives = 21/89 (23%), Gaps = 17/89 (19%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKME---------- 52
          G+++              +W K +         Q+  + +G                   
Sbjct: 14 GKEVLLLVHNLPQHLFGYSWYKGE---RVDGNRQIIGYVIGTQQATPGPAYSGREIIYPN 70

Query: 53 ----IDPATQKDAGYYECVADNPFAIDRR 77
              I    Q D G+Y         ++  
Sbjct: 71 ASLLIQNIIQNDTGFYTLHVIKSDLVNEE 99

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 58.6 bits (141), Expect = 4e-12
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 3   GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
                  C++  G P   ITW  D   +             G  T+ S   + P++Q D 
Sbjct: 132 EPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFL--SGTVTVTSLWILVPSSQVDG 189

Query: 62  GYYECVADNP 71
               C  ++ 
Sbjct: 190 KNVTCKVEHE 199

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 54.7 bits (131), Expect = 1e-10
 Identities = 12/70 (17%), Positives = 16/70 (22%), Gaps = 12/70 (17%)

Query: 3   GRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
             + T  C A   P P    W+     L      Q              + I P  +   
Sbjct: 232 QNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ-------GAQ----LLIRPVDKPIN 280

Query: 62  GYYECVADNP 71
               C   N 
Sbjct: 281 TTLICNVTNA 290

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 42.0 bits (98), Expect = 3e-06
 Identities = 13/96 (13%), Positives = 23/96 (23%), Gaps = 18/96 (18%)

Query: 1   MLGRKITFFCMAEGFPRP-----HITWTKDDIELTFHKYFQVHE---------WFLGNNT 46
            LG  +T  C  +           +TW +     +   + Q             F+    
Sbjct: 13  FLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARL 72

Query: 47  IKSKME----IDPATQKDAGYYECVADNPFAIDRRG 78
                     +     +D G Y C+        R  
Sbjct: 73  GAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSV 108

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 55.4 bits (134), Expect = 4e-12
 Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 3  GRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
          G  + + C  E + +   +TW     +L   + +++           + + +   T+ D 
Sbjct: 16 GGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEIT-----YEDGVAILYVKDITKLDD 70

Query: 62 GYYECVADNPF 72
          G Y C   N +
Sbjct: 71 GTYRCKVVNDY 81

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 58.6 bits (141), Expect = 4e-12
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 10/74 (13%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIEL--TFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
            +G  +   C  EG       W   ++E   T  K   +    L   T+      +  + 
Sbjct: 171 DVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGL---TL-----ANVTSD 222

Query: 59  KDAGYYECVADNPF 72
            +     C A+N  
Sbjct: 223 LNRKNVTCWAENDV 236

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.4 bits (138), Expect = 1e-11
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 2/69 (2%)

Query: 6   ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK--SKMEIDPATQKDAGY 63
                  +G P P + W  +   L    +          N       + ++  T  + G 
Sbjct: 264 WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN 323

Query: 64  YECVADNPF 72
           Y  +A NPF
Sbjct: 324 YTLLAANPF 332

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 55.0 bits (133), Expect = 7e-12
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G  +   C       P + W KD   +   + +      +   T  + + I  A+ KDAG
Sbjct: 23 GEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYD----VVCEGT-MAMLVIRGASLKDAG 76

Query: 63 YYECVADN 70
           Y C  + 
Sbjct: 77 EYTCEVEA 84

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 58.1 bits (140), Expect = 7e-12
 Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 4/78 (5%)

Query: 1   MLGRKITFFCMAEGFPRPHI-TWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
           + G      C A             ++ +L   +    H            + +D    +
Sbjct: 199 IRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHN---NRYQKVLTLNLDQVDFQ 255

Query: 60  DAGYYECVADNPFAIDRR 77
            AG Y CVA N       
Sbjct: 256 HAGNYSCVASNVQGKHST 273

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 45.7 bits (108), Expect = 2e-07
 Identities = 8/70 (11%), Positives = 16/70 (22%), Gaps = 10/70 (14%)

Query: 3   GRKITFFCMAEG-FPRPHITWTKDD-IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
            +     C+         ++  +     L  H  +                 I  A    
Sbjct: 104 DQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSP--------WHGFTIHRAKFIQ 155

Query: 61  AGYYECVADN 70
           +  Y+C A  
Sbjct: 156 SQDYQCSALM 165

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 41.5 bits (97), Expect = 4e-06
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 14/69 (20%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G  +T  C+  G     + W                 W L ++   S +  + AT ++ G
Sbjct: 19 GATVTLRCVGNGS----VEWDGPPSP----------HWTLYSDGSSSILSTNNATFQNTG 64

Query: 63 YYECVADNP 71
           Y C     
Sbjct: 65 TYRCTEPGD 73

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 57.0 bits (137), Expect = 7e-12
 Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 8/77 (10%)

Query: 2   LGRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           +G      C   EG       W K     T           + +  I     +  A+ + 
Sbjct: 135 IGNDFKLKCEPKEGSLPLQFEWQKLSDSQTM---PTPWLAEMTSPVIS----VKNASSEY 187

Query: 61  AGYYECVADNPFAIDRR 77
           +G Y C   N    D+ 
Sbjct: 188 SGTYSCTVQNRVGSDQC 204

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 37.4 bits (86), Expect = 1e-04
 Identities = 12/96 (12%), Positives = 18/96 (18%), Gaps = 27/96 (28%)

Query: 1   MLGRKITFFCMAEGFPRP----HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKME---- 52
             G      C     P       I W     +       QV   + G+    +       
Sbjct: 13  AKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVD--QVIILYSGDKIYDNYYPDLKG 70

Query: 53  -----------------IDPATQKDAGYYECVADNP 71
                            +      D G Y+C     
Sbjct: 71  RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKA 106

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 57.8 bits (139), Expect = 8e-12
 Identities = 13/88 (14%), Positives = 23/88 (26%), Gaps = 8/88 (9%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKME-------I 53
            LG +I   C   G       W  +   +         +++   N    +         I
Sbjct: 222 DLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNI 281

Query: 54  DPATQKD-AGYYECVADNPFAIDRRGFR 80
                +     + C A N   ID    +
Sbjct: 282 SEIESRFYKHPFTCFAKNTHGIDAAYIQ 309

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 52.4 bits (125), Expect = 8e-10
 Identities = 12/77 (15%), Positives = 19/77 (24%), Gaps = 14/77 (18%)

Query: 2   LGRKITFFC------MAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDP 55
           +       C        E    P + W KD   L               + +     +  
Sbjct: 117 VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG----VKDRLI----VMN 168

Query: 56  ATQKDAGYYECVADNPF 72
             +K  G Y C A   +
Sbjct: 169 VAEKHRGNYTCHASYTY 185

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 49.0 bits (116), Expect = 1e-08
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 10/65 (15%)

Query: 10 CMAEGFP-RPHITWTKDD--IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC 66
          C       +  ITW KDD    ++  +  ++H+        K K+   PA  +D+G+Y C
Sbjct: 27 CPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH-------KEKLWFVPAKVEDSGHYYC 79

Query: 67 VADNP 71
          V  N 
Sbjct: 80 VVRNS 84

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 54.7 bits (132), Expect = 1e-11
 Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 6/69 (8%)

Query: 3  GRKITFFC-MAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
          G   +F C ++         WT     +     FQ           K  + +  A   DA
Sbjct: 23 GESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQAT-----RQGRKYILVVREAAPSDA 77

Query: 62 GYYECVADN 70
          G        
Sbjct: 78 GEVVFSVRG 86

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 54.3 bits (131), Expect = 1e-11
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
            ++   C          TW KD  ++   +   V       +  K ++ +  A  +D+G
Sbjct: 25 SERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKM-----DGRKHRLILPEAKVQDSG 78

Query: 63 YYECVADN 70
           +EC  + 
Sbjct: 79 EFECRTEG 86

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 57.0 bits (137), Expect = 1e-11
 Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 10/68 (14%)

Query: 7   TFFCMAEGFPRPHITWTKDD--IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY 64
                        I W KD   ++    K+  V     G   +     +     +DAGYY
Sbjct: 144 DLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSV----RGTTHLL----VHDVALEDAGYY 195

Query: 65  ECVADNPF 72
            CV     
Sbjct: 196 RCVLTFAH 203

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 55.1 bits (132), Expect = 8e-11
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 6   ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE 65
           + ++  A   PR ++TW K+D   T     +   W          + + PA Q+D+G Y 
Sbjct: 43  VPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGA-----LWLLPALQEDSGTYV 97

Query: 66  CVADNPFAIDRR 77
           C   N    D+ 
Sbjct: 98  CTTRNASYCDKM 109

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 48.5 bits (115), Expect = 2e-08
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 12/88 (13%)

Query: 1   MLGRKITFFCMA---EGFPRPHITWTKDDIELTFHKYFQVHEW--------FLGNNTIKS 49
            LG ++T  C      G P   + W   +       Y                  N I+ 
Sbjct: 239 SLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEV 298

Query: 50  KMEIDPATQKDAGY-YECVADNPFAIDR 76
            +  DP T++D    ++CV  N  +   
Sbjct: 299 PLIFDPVTREDLHMDFKCVVHNTLSFQT 326

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.0 bits (138), Expect = 2e-11
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 11/75 (14%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDD---IELTFHKYFQVHEWFLGNNTIKSKMEIDPAT 57
             G  + F C A+G P P I W       +    +    V      + T+    E+  A 
Sbjct: 398 DEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFP----DGTL----EVRYAQ 449

Query: 58  QKDAGYYECVADNPF 72
            +D G Y C+A N  
Sbjct: 450 VQDNGTYLCIAANAG 464

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 53.9 bits (130), Expect = 2e-11
 Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G ++             + W K+ +ELT    F+    F  +   +  +      Q+D G
Sbjct: 23 GDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFKKDGK-RHILIFSDVVQEDRG 80

Query: 63 YYECVADN 70
           Y+ + + 
Sbjct: 81 RYQVITNG 88

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.7 bits (137), Expect = 2e-11
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 5/72 (6%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
             G      C A       ++W   +  +  H  ++V    L + T+         T +D
Sbjct: 354 TEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTL----NFTNVTVQD 408

Query: 61  AGYYECVADNPF 72
            G Y C+  N  
Sbjct: 409 TGMYTCMVSNSV 420

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 54.0 bits (130), Expect = 2e-11
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G   T  C      +  +TW KD  +L+     +V            ++ +  A Q +AG
Sbjct: 26 GASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEA-----VGCTRRLVVQQAGQAEAG 79

Query: 63 YYECVADN 70
           Y C A  
Sbjct: 80 EYSCEAGG 87

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 56.5 bits (136), Expect = 2e-11
 Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 4/76 (5%)

Query: 3   GRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           G      C A        +   + D +L         + +         + ++    +DA
Sbjct: 201 GEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKV---RALSLNAVDFQDA 257

Query: 62  GYYECVADNPFAIDRR 77
           G Y CVA N       
Sbjct: 258 GIYSCVASNDVGTRTA 273

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 49.2 bits (117), Expect = 1e-08
 Identities = 8/69 (11%), Positives = 19/69 (27%), Gaps = 8/69 (11%)

Query: 3   GRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           G++    C+      +  ++  ++          +   +F           I  A   D+
Sbjct: 104 GQEAVLPCLITDPALKDSVSLMREGGRQVLR---KTVYFFSPWRGF----IIRKAKVLDS 156

Query: 62  GYYECVADN 70
             Y C    
Sbjct: 157 NTYVCKTMV 165

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 44.2 bits (104), Expect = 6e-07
 Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 14/71 (19%)

Query: 2  LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           G  +T  C++ G     + W                 W L   +  S +    AT K+ 
Sbjct: 18 PGETVTLRCVSNG----SVEWDGPISPY----------WTLDPESPGSTLTTRNATFKNT 63

Query: 62 GYYECVADNPF 72
          G Y C      
Sbjct: 64 GTYRCTELEDP 74

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 53.5 bits (129), Expect = 2e-11
 Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
              +  F C      +    W K+ +E+   K   +            K+ ID    +D
Sbjct: 21 KAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISH-----VGRFHKLVIDDVRPED 74

Query: 61 AGYYECVADN 70
           G Y  V D 
Sbjct: 75 EGDYTFVPDG 84

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 55.7 bits (134), Expect = 2e-11
 Identities = 10/74 (13%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G+   +    +      + +  ++ E+     +++H   +  NT   +M ++    +D G
Sbjct: 18 GQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMH---IDRNTGIIEMFMEKLQDEDEG 74

Query: 63 YYECVADNPFAIDR 76
           Y     +  A + 
Sbjct: 75 TYTFQLQDGKATNH 88

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 54.6 bits (131), Expect = 6e-11
 Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 3   GRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
              +   C      +  HI W KD+ E++  +     +   G       + I   ++KDA
Sbjct: 131 ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD---GI----CTLLITEFSKKDA 183

Query: 62  GYYECVADNPF 72
           G YE +  +  
Sbjct: 184 GIYEVILKDDR 194

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 56.3 bits (135), Expect = 3e-11
 Identities = 16/70 (22%), Positives = 19/70 (27%), Gaps = 11/70 (15%)

Query: 3   GRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
              +   C A+  P      WT  +  L      Q    F             P     A
Sbjct: 247 RMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFF----------KGPINYSLA 296

Query: 62  GYYECVADNP 71
           G Y C A NP
Sbjct: 297 GTYICEATNP 306

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 53.2 bits (127), Expect = 4e-10
 Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 4/70 (5%)

Query: 3   GRKITFFCM-AEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
            + +   C  A G P   ++W         ++  +      G  T+ S+  + P+ +   
Sbjct: 150 DKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPN---GTVTVISRYRLVPSREAHQ 206

Query: 62  GYYECVADNP 71
               C+ +  
Sbjct: 207 QSLACIVNYH 216

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 13/95 (13%), Positives = 23/95 (24%), Gaps = 17/95 (17%)

Query: 1   MLGRKITFFCMAEGFPRP----HITWTKDDIEL-----TFHKYFQVHE--------WFLG 43
            +G  +   C             +TW K           ++    V           FL 
Sbjct: 27  FIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLR 86

Query: 44  NNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG 78
            +     + +     +D G Y C        +R  
Sbjct: 87  PSFTDGTIRLSRLELEDEGVYICEFATFPTGNRES 121

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 55.8 bits (134), Expect = 4e-11
 Identities = 14/70 (20%), Positives = 18/70 (25%), Gaps = 18/70 (25%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
             + T  C A G P P +   KD                          E    T+   G
Sbjct: 200 NSQQTPMCQAWGNPLPELKCLKD------------------GTFPLPIGESVTVTRDLEG 241

Query: 63  YYECVADNPF 72
            Y C A +  
Sbjct: 242 TYLCRARSTQ 251

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 36.6 bits (84), Expect = 3e-04
 Identities = 14/72 (19%), Positives = 20/72 (27%), Gaps = 19/72 (26%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G ++T  C A   PR  +T                               +  AT +D G
Sbjct: 113 GTEVTVKCEAH--PRAKVTL----------------NGVPAQPLGPRAQLLLKATPEDNG 154

Query: 63  Y-YECVADNPFA 73
             + C A    A
Sbjct: 155 RSFSCSATLEVA 166

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 35.8 bits (82), Expect = 6e-04
 Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 11/73 (15%)

Query: 3  GRKITFFCMAEG-FPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDP-ATQ 58
            + T  C  +G FP     +     D  L             GN++  +K  +   A  
Sbjct: 18 DTQGTVVCSLDGLFPVSEAQVHLALGDQRLN-------PTVTYGNDSFSAKASVSVTAED 70

Query: 59 KDAGYYECVADNP 71
          +      C     
Sbjct: 71 EGTQRLTCAVILG 83

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.9 bits (135), Expect = 4e-11
 Identities = 13/72 (18%), Positives = 19/72 (26%), Gaps = 6/72 (8%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
             GR     C     P   + W   +  +  H         L + T+            D
Sbjct: 365 SEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTL----NFSHVLLSD 418

Query: 61  AGYYECVADNPF 72
            G Y C+  N  
Sbjct: 419 TGVYTCMVTNVA 430

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 54.2 bits (130), Expect = 6e-11
 Identities = 8/68 (11%), Positives = 18/68 (26%), Gaps = 15/68 (22%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G+ +T    +     P +       +              G  T+     +     +D+G
Sbjct: 112 GQSLTLTLESPPGSSPSVQCRSPRGKN-----------IQGGKTLS----VSQLELQDSG 156

Query: 63  YYECVADN 70
            + C    
Sbjct: 157 TWTCTVLQ 164

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 50.4 bits (120), Expect = 2e-09
 Identities = 12/81 (14%), Positives = 20/81 (24%), Gaps = 12/81 (14%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDD--IELTFHKYFQVHEWFLGNNTIKSKM--------- 51
          G  +   C A         W   +    L     F        N+   S+          
Sbjct: 10 GDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFP 69

Query: 52 -EIDPATQKDAGYYECVADNP 71
            I     +D+  Y C  ++ 
Sbjct: 70 LIIKNLKIEDSDTYICEVEDQ 90

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 51.9 bits (125), Expect = 9e-11
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 7/70 (10%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           LG++I   C           WTK+ + +      +V            K+ I  A  +D
Sbjct: 20 NLGKEICLKCEISE--NIPGKWTKNGLPVQESDRLKVV-----QKGRIHKLVIANALTED 72

Query: 61 AGYYECVADN 70
           G Y    D 
Sbjct: 73 EGDYVFAPDA 82

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 52.0 bits (125), Expect = 9e-11
 Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 6/68 (8%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G ++ F       P+  + W K+  E+     +            +  + I+     D  
Sbjct: 23 GGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEH-----KGCQRILFINNCQMTDDS 76

Query: 63 YYECVADN 70
           Y   A +
Sbjct: 77 EYYVTAGD 84

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 52.4 bits (125), Expect = 1e-10
 Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 5/75 (6%)

Query: 3  GRKITFFCMAEGFPRP--HITWTKDDIEL---TFHKYFQVHEWFLGNNTIKSKMEIDPAT 57
          G  ++F C A           W  D+  L       Y  +           + + +    
Sbjct: 25 GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84

Query: 58 QKDAGYYECVADNPF 72
              G Y+CV  N F
Sbjct: 85 FTSEGXYQCVISNHF 99

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 54.8 bits (131), Expect = 1e-10
 Identities = 8/70 (11%), Positives = 19/70 (27%), Gaps = 15/70 (21%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           + G+ +T    +     P +       +              G  T+     +     +D
Sbjct: 109 LQGQSLTLTLESPPGSSPSVQCRSPRGKN-----------IQGGKTLS----VSQLELQD 153

Query: 61  AGYYECVADN 70
           +G + C    
Sbjct: 154 SGTWTCTVLQ 163

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 49.8 bits (118), Expect = 6e-09
 Identities = 10/83 (12%), Positives = 20/83 (24%), Gaps = 16/83 (19%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKME---------- 52
          G  +   C A         W   +         Q      G + +  + +          
Sbjct: 9  GDTVELTCTASQKKSIQFHWKNSNQIKILGN--QGSFLTKGPSKLNDRADSRRSLWDQGN 66

Query: 53 ----IDPATQKDAGYYECVADNP 71
              I     +D+  Y C  ++ 
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQ 89

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 9/70 (12%), Positives = 19/70 (27%), Gaps = 18/70 (25%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK--SKMEIDPATQKD 60
             +    C   G   P +  +                  L N   K   + +       +
Sbjct: 296 QLQKNLTCEVWGPTSPKLMLS----------------LKLENKEAKVSKREKAVWVLNPE 339

Query: 61  AGYYECVADN 70
           AG ++C+  +
Sbjct: 340 AGMWQCLLSD 349

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 37.1 bits (85), Expect = 2e-04
 Identities = 6/69 (8%), Positives = 21/69 (30%), Gaps = 1/69 (1%)

Query: 5   KITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNN-TIKSKMEIDPATQKDAGY 63
           ++ +        +  IT+   + E++  +  Q  +  +G    +   +         +G 
Sbjct: 212 ELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGN 271

Query: 64  YECVADNPF 72
                +   
Sbjct: 272 LTLALEAKT 280

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 51.6 bits (124), Expect = 1e-10
 Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 6/68 (8%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G    F    E      + W +   +++    + +     G    +  + +      D G
Sbjct: 23 GSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATE--GT---RHTLTVREVGPADQG 76

Query: 63 YYECVADN 70
           Y  +A +
Sbjct: 77 SYAVIAGS 84

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 51.5 bits (123), Expect = 2e-10
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 7/85 (8%)

Query: 3   GRKITFFCMAEGFP---RPHITWTKD---DIELTFHKYFQVHEWFLGNNTI-KSKMEIDP 55
           G  ITF     G      P + W K    D+     ++ Q+H+ +   + +   ++ I  
Sbjct: 19  GGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITD 78

Query: 56  ATQKDAGYYECVADNPFAIDRRGFR 80
           A     G Y C        D   F 
Sbjct: 79  AQPAFTGSYRCEVSTKDKFDCSNFN 103

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 51.7 bits (124), Expect = 2e-10
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 6/68 (8%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
            ++   C     P   + WTKD  E+       + +          ++ +     +D+G
Sbjct: 28 LERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQK-----EDTVRRLVLPAVQLEDSG 81

Query: 63 YYECVADN 70
           Y C  D+
Sbjct: 82 EYLCEIDD 89

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 52.7 bits (126), Expect = 2e-10
 Identities = 14/72 (19%), Positives = 17/72 (23%), Gaps = 14/72 (19%)

Query: 2  LGRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
          LG KI   C             W K  + L              +     K E    +  
Sbjct: 12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLK------------EDALPGQKTEFKVDSDD 59

Query: 60 DAGYYECVADNP 71
            G Y CV    
Sbjct: 60 QWGEYSCVFLPE 71

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 49.3 bits (117), Expect = 4e-09
 Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 3/75 (4%)

Query: 1   MLGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHE-WFLGNNTIKSKMEIDPAT- 57
             G      C +E  P      W K                +F+ ++  +S++ I+    
Sbjct: 96  NEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNM 155

Query: 58  QKDAGYYECVADNPF 72
           + D G Y C   +  
Sbjct: 156 EADPGQYRCNGTSSK 170

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 53.3 bits (127), Expect = 2e-10
 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 5/77 (6%)

Query: 1   MLGRKITFFCMAEGFP--RPHITWTKDDIELTFHKYFQVHEWFLGNNTIK---SKMEIDP 55
            +G K+   C A           W     +    K           + +K   S + ID 
Sbjct: 118 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 177

Query: 56  ATQKDAGYYECVADNPF 72
            T+ D G Y C A +  
Sbjct: 178 VTRSDQGLYTCAASSGL 194

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 35.5 bits (81), Expect = 6e-04
 Identities = 10/68 (14%), Positives = 16/68 (23%), Gaps = 6/68 (8%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           + +   C+       +++      E  F        W       K    I       AG
Sbjct: 24 NKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISW-----DSKKGFTIPSYMISYAG 77

Query: 63 YYECVADN 70
             C A  
Sbjct: 78 MVFCEAKI 85

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 53.7 bits (128), Expect = 2e-10
 Identities = 10/76 (13%), Positives = 20/76 (26%), Gaps = 5/76 (6%)

Query: 2   LGRKITFFCMAEGFPRP----HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPAT 57
           +G      C A           I W      +    +             ++ +  +  T
Sbjct: 242 IGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVT 301

Query: 58  QKDAGY-YECVADNPF 72
           ++  G  Y C   N +
Sbjct: 302 EEYIGNTYTCRGHNYY 317

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 52.1 bits (124), Expect = 8e-10
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 11/71 (15%)

Query: 3   GRKITFFC-MAEGFPRPHITWTKDDIELTF-HKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
              I  +C +       +ITW K++ EL      +      L          I     +D
Sbjct: 143 KYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNL---------IIHNPELED 193

Query: 61  AGYYECVADNP 71
           +G Y+C     
Sbjct: 194 SGRYDCYVHYD 204

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 35.2 bits (80), Expect = 8e-04
 Identities = 11/75 (14%), Positives = 19/75 (25%), Gaps = 8/75 (10%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHE---WFLGNNTIKSKMEIDPAT 57
            LG   +  C           +   D  + + K  +        + N  +     I   T
Sbjct: 42  ALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLW----IANYT 97

Query: 58  QKDAG-YYECVADNP 71
             D+   Y C     
Sbjct: 98  SNDSHRRYLCTVTTK 112

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 50.8 bits (122), Expect = 3e-10
 Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 6/68 (8%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G   T  C+      P + W   +  L     + + +          ++ +     +D+G
Sbjct: 23 GGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ-----EGAMLELVVRNLRPQDSG 76

Query: 63 YYECVADN 70
           Y C   +
Sbjct: 77 RYSCSFGD 84

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 53.1 bits (127), Expect = 3e-10
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 4/70 (5%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEW-FLGNNTIKSKMEIDPATQKDA 61
             +    C AEG+P+  + WT  D ++   K    +         + S + I+       
Sbjct: 131 TSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTT---TN 187

Query: 62  GYYECVADNP 71
             + C     
Sbjct: 188 EIFYCTFRRL 197

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 53.0 bits (126), Expect = 4e-10
 Identities = 15/85 (17%), Positives = 21/85 (24%), Gaps = 16/85 (18%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIEL----TFHKYFQVHEWFLGNNTIKSKME------ 52
           G  IT  C        ++TW           T       ++   G     S++       
Sbjct: 151 GNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS 210

Query: 53  ------IDPATQKDAGYYECVADNP 71
                 I  A   DAG   C     
Sbjct: 211 GARNLVIRAAKITDAGRVWCELATG 235

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 43.0 bits (100), Expect = 1e-06
 Identities = 15/105 (14%), Positives = 25/105 (23%), Gaps = 27/105 (25%)

Query: 2   LGRKITFFC---MAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKME------ 52
            G  +   C   +A     P I+W K        K F+ +  + G      + +      
Sbjct: 16  AGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESF 75

Query: 53  ------------------IDPATQKDAGYYECVADNPFAIDRRGF 79
                             +     +D G Y C           G 
Sbjct: 76  GDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGL 120

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 50.4 bits (121), Expect = 4e-10
 Identities = 11/68 (16%), Positives = 16/68 (23%), Gaps = 6/68 (8%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G    F       P  H  W      L      ++ E     +  K  + +        G
Sbjct: 20 GETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIE-----DGKKHILILHNCQLGMTG 73

Query: 63 YYECVADN 70
               A N
Sbjct: 74 EVSFQAAN 81

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 52.4 bits (125), Expect = 4e-10
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
              +T  C++      +I W  +   L   +   + +    N+     + IDP  ++DAG
Sbjct: 125 LDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQ---NNSI----LRIDPIKREDAG 176

Query: 63  YYECVADNP 71
            Y+C   NP
Sbjct: 177 EYQCEISNP 185

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 42.3 bits (99), Expect = 2e-06
 Identities = 9/83 (10%), Positives = 17/83 (20%), Gaps = 17/83 (20%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKME---------- 52
             +               W K +   T     ++  +   +N   +             
Sbjct: 14 DNNVLLLVHNLPLALGAFAWYKGN---TTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70

Query: 53 ----IDPATQKDAGYYECVADNP 71
                  T KD G Y     + 
Sbjct: 71 GSLLFQMITMKDMGVYTLDMTDE 93

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 50.5 bits (121), Expect = 5e-10
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 7/68 (10%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G   T  C         + W K    L     + + +     +  + +++I   +  DAG
Sbjct: 23 GATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQ-----DGTRCELQIHDLSVADAG 75

Query: 63 YYECVADN 70
           Y C+   
Sbjct: 76 EYSCMCGQ 83

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 50.0 bits (120), Expect = 6e-10
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 4/70 (5%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
            G ++   C        ++ W K+  E+      +      G    K  + I+ AT+ D
Sbjct: 20 YCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGK---KHILIIEGATKAD 75

Query: 61 AGYYECVADN 70
          A  Y  +   
Sbjct: 76 AAEYSVMTTG 85

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 52.2 bits (124), Expect = 9e-10
 Identities = 14/70 (20%), Positives = 18/70 (25%), Gaps = 18/70 (25%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
             + T  C A G P P +   KD                          E    T+   G
Sbjct: 385 NSQQTPMCQAWGNPLPELKCLKD------------------GTFPLPIGESVTVTRDLEG 426

Query: 63  YYECVADNPF 72
            Y C A +  
Sbjct: 427 TYLCRARSTQ 436

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 40.6 bits (94), Expect = 1e-05
 Identities = 7/71 (9%), Positives = 19/71 (26%), Gaps = 17/71 (23%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G ++T  C A    +  +                           ++++ +    + +  
Sbjct: 298 GTEVTVKCEAHPRAKVTLNGVPAQPLGP-----------------RAQLLLKATPEDNGR 340

Query: 63  YYECVADNPFA 73
            + C A    A
Sbjct: 341 SFSCSATLEVA 351

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 35.6 bits (81), Expect = 6e-04
 Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 3   GRKITFFCMAEG-FPRPHIT--WTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
           G+ +T  C  EG  PR ++T    + + EL                T      +      
Sbjct: 101 GKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGE----PAEVTTT----VLVRRDH 152

Query: 60  DAGYYECVADN 70
               + C  + 
Sbjct: 153 HGANFSCRTEL 163

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 48.9 bits (117), Expect = 2e-09
 Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 7/70 (10%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
            G      C         + W K    L       + +     +  + +++I     +D
Sbjct: 32 TEGATAVLRCELSKMAP--VEWWKGHETLRDGDRHSLRQ-----DGARCELQIRGLVAED 84

Query: 61 AGYYECVADN 70
          AG Y C+   
Sbjct: 85 AGEYLCMCGK 94

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 48.9 bits (117), Expect = 2e-09
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 6/66 (9%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
               F C  E  P   +TW K  +EL      Q  +       +  ++ I    + D+ 
Sbjct: 23 KGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQPSQ-----EGLTLRLTISALEKADSD 76

Query: 63 YYECVA 68
           Y C  
Sbjct: 77 TYTCDI 82

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 51.0 bits (121), Expect = 3e-09
 Identities = 11/67 (16%), Positives = 15/67 (22%), Gaps = 9/67 (13%)

Query: 7   TFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC 66
                     +P ITW     ++            L             A   + G Y C
Sbjct: 144 NVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNL---------SFLIALISNNGNYTC 194

Query: 67  VADNPFA 73
           V   P  
Sbjct: 195 VVTYPEN 201

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 46.4 bits (109), Expect = 9e-08
 Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 10/87 (11%)

Query: 1   MLGRKITFFCMA----EGFPRPHITWTKDDIELTFHKYFQVHE-----WFLGNNTIKSKM 51
             G ++   C          R  + WT D  +                    + T    +
Sbjct: 239 EPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQIL 298

Query: 52  EIDPATQKDAGY-YECVADNPFAIDRR 77
            I   T +D    Y C A +      +
Sbjct: 299 SIKKVTSEDLKRSYVCHARSAKGEVAK 325

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 43.7 bits (102), Expect = 7e-07
 Identities = 10/73 (13%), Positives = 18/73 (24%), Gaps = 8/73 (10%)

Query: 3   GRKITFFCMAEGFPRPHITWTKD----DIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
              + F           + W       D+E   +     +      + +       P   
Sbjct: 33  EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVL----WFRPTLL 88

Query: 59  KDAGYYECVADNP 71
            D G Y C+  N 
Sbjct: 89  NDTGNYTCMLRNT 101

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 49.0 bits (116), Expect = 3e-09
 Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 5/75 (6%)

Query: 3  GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIK---SKMEIDPAT 57
          G K+   C A           W     +    K           + +K   S + ID  T
Sbjct: 23 GEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVT 82

Query: 58 QKDAGYYECVADNPF 72
          + D G Y C A +  
Sbjct: 83 RSDQGLYTCAASSGL 97

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 50.0 bits (119), Expect = 3e-09
 Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 7/69 (10%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
             ++   C A G+P   ++W    +             +     + S + + P     + 
Sbjct: 118 TGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLY----QVTSVLRLKPQ---PSR 170

Query: 63  YYECVADNP 71
            + C+  N 
Sbjct: 171 NFSCMFWNA 179

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 40.8 bits (95), Expect = 8e-06
 Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 4/74 (5%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHE--WFLGNNTIKSK--MEIDPA 56
           +G  ++  C  +      +   +  ++   +      E    L       K    I   
Sbjct: 15 DVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSV 74

Query: 57 TQKDAGYYECVADN 70
            +D+G Y C+   
Sbjct: 75 QVRDSGQYRCLVIC 88

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 48.1 bits (115), Expect = 4e-09
 Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 9/70 (12%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTF--HKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
          G KI             + W K+  E+     KY        G    K  + I   +  D
Sbjct: 31 GHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESI---GA---KRTLTISQCSLAD 83

Query: 61 AGYYECVADN 70
             Y+CV   
Sbjct: 84 DAAYQCVVGG 93

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 49.5 bits (118), Expect = 4e-09
 Identities = 9/69 (13%), Positives = 17/69 (24%), Gaps = 16/69 (23%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
               T  C       P +   +D   L                 +  ++     T   + 
Sbjct: 115 CINTTLTCEVMNGTDPELNLYQDGKHL----------------KLSQRVITHKWTTSLSA 158

Query: 63  YYECVADNP 71
            ++C A N 
Sbjct: 159 KFKCTAGNK 167

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 46.4 bits (110), Expect = 5e-08
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 6/77 (7%)

Query: 1  MLGRKITFFC--MAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK----SKMEID 54
           LG+ I               I W K   +    ++ +  E F   +T K      ++I 
Sbjct: 12 ALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIK 71

Query: 55 PATQKDAGYYECVADNP 71
               D   Y+    + 
Sbjct: 72 HLKTDDQDIYKVSIYDT 88

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 48.8 bits (116), Expect = 1e-08
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 18/74 (24%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK-----SKMEIDPAT 57
           G  +T  C  +   +           L F        +++G+ T++     S+ +I  A 
Sbjct: 185 GNLVTLSCETKLLLQRPGLQ------LYF-------SFYMGSKTLRGRNTSSEYQILTAR 231

Query: 58  QKDAGYYECVADNP 71
           ++D+G Y C A   
Sbjct: 232 REDSGLYWCEAATE 245

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 44.5 bits (105), Expect = 4e-07
 Identities = 11/69 (15%), Positives = 15/69 (21%), Gaps = 16/69 (23%)

Query: 3  GRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
             +T  C     P      W  +                    T      I  A+  D+
Sbjct: 16 EETVTLHCEVLHLPGSSSTQWFLNGTAT---------------QTSTPSYRITSASVNDS 60

Query: 62 GYYECVADN 70
          G Y C    
Sbjct: 61 GEYRCQRGL 69

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 44.1 bits (104), Expect = 5e-07
 Identities = 9/70 (12%), Positives = 17/70 (24%), Gaps = 14/70 (20%)

Query: 3   GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           G  +   C A       ++ + ++     F  +              S + I        
Sbjct: 97  GEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHW-------------NSNLTILKTNISHN 143

Query: 62  GYYECVADNP 71
           G Y C     
Sbjct: 144 GTYHCSGMGK 153

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 1e-08
 Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 6/71 (8%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
            LG  +T  C  +      +  +  + E    +        + N  +           +D
Sbjct: 259 HLGDTLTIRCDTKQQGMTKVWVSPSN-EQVLSQGSNGSV-SVRNGDL----FFKKVQVED 312

Query: 61  AGYYECVADNP 71
            G Y C A   
Sbjct: 313 GGVYTCYAMGE 323

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 47.6 bits (112), Expect = 3e-08
 Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 7/77 (9%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G  +   C     P   I W  +D  +   +  +       + ++K   E++      +G
Sbjct: 128 GTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE-----QSG 180

Query: 63  YYECVADNPFAIDRRGF 79
           YY C        D   +
Sbjct: 181 YYVCYPRGSKPEDANFY 197

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 44.9 bits (105), Expect = 2e-07
 Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 15/68 (22%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
             +   C        +ITW KD   + F                K K  +    +   G
Sbjct: 18 DGSVLLTC---DAEAKNITWFKDGKMIGF------------LTEDKKKWNLGSNAKDPRG 62

Query: 63 YYECVADN 70
           Y+C    
Sbjct: 63 MYQCKGSQ 70

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 47.1 bits (111), Expect = 4e-08
 Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 8/69 (11%)

Query: 2  LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
          +G  ++  C   G   P  +W +  I+   +                S + ++P +  + 
Sbjct: 15 IGDSVSLTCSTTGCESPFFSW-RTQIDSPLNGKVTNEGT-------TSTLTMNPVSFGNE 66

Query: 62 GYYECVADN 70
            Y C A  
Sbjct: 67 HSYLCTATC 75

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 47.1 bits (111), Expect = 4e-08
 Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 4/74 (5%)

Query: 1   MLGRKITFFCMAEG---FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPAT 57
             G+ IT  C       F R  I   K D  +   ++ +  +          ++   P  
Sbjct: 104 EAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKS-LEVTFTPVI 162

Query: 58  QKDAGYYECVADNP 71
           +       C A   
Sbjct: 163 EDIGKVLVCRAKLH 176

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 46.4 bits (110), Expect = 6e-08
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 14/70 (20%)

Query: 3   GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           G+ +   C     +    + + KD   L +             N     + I  AT +D+
Sbjct: 100 GQPLFLRCHGWRNWDVYKVIYYKDGEALKYW----------YEN---HNISITNATVEDS 146

Query: 62  GYYECVADNP 71
           G Y C     
Sbjct: 147 GTYYCTGKVW 156

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 43.7 bits (103), Expect = 5e-07
 Identities = 12/71 (16%), Positives = 18/71 (25%), Gaps = 16/71 (22%)

Query: 1  MLGRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
            G  +T  C    F       W  +                       S + I  A  +
Sbjct: 17 FKGENVTLTCNGNNFFEVSSTKWFHNGSLSE---------------ETNSSLNIVNAKFE 61

Query: 60 DAGYYECVADN 70
          D+G Y+C    
Sbjct: 62 DSGEYKCQHQQ 72

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 46.3 bits (109), Expect = 9e-08
 Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 9/85 (10%)

Query: 3   GRKITFFCMAEGF-PRPHITWTKDDIELT--------FHKYFQVHEWFLGNNTIKSKMEI 53
             +    C +    P P ITW ++   L          +   +      G  ++ S + +
Sbjct: 134 SAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYL 193

Query: 54  DPATQKDAGYYECVADNPFAIDRRG 78
                     + C A       R G
Sbjct: 194 RLRKDDRDASFHCAAHYSLPEGRHG 218

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 46.4 bits (110), Expect = 1e-07
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
           G+   F+C       P +TW KDD EL     +         N     + I+     D G
Sbjct: 497 GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKR-----YNGNDYGLTINRVKGDDKG 551

Query: 63  YYECVADNPF 72
            Y   A N +
Sbjct: 552 EYTVRAKNSY 561

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 44.0 bits (103), Expect = 2e-07
 Identities = 16/84 (19%), Positives = 25/84 (29%), Gaps = 7/84 (8%)

Query: 3   GRKITFFCMAEGFP---RPHITWTKD---DIELTFHKYFQVHEWFLGNNTIKS-KMEIDP 55
           G+         G     +P I W K    ++       F   E     + + + ++ I  
Sbjct: 27  GKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGK 86

Query: 56  ATQKDAGYYECVADNPFAIDRRGF 79
               D GYY          D  GF
Sbjct: 87  VVLGDRGYYRLEVKAKDTCDSCGF 110

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 43.3 bits (102), Expect = 3e-07
 Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 22/79 (27%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIE-LTFHKY-------FQV-----HEWFLGNNTI 47
          + G      C  +      + W+    + L F           ++     HE  +     
Sbjct: 19 VEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSI----- 73

Query: 48 KSKMEIDPATQKDAGYYEC 66
               +   +  D G Y C
Sbjct: 74 ----SVSDVSLSDEGQYTC 88

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 44.8 bits (105), Expect = 4e-07
 Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 2/72 (2%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
             G+  TF C A G            I++      ++           +   +   T++D
Sbjct: 177 NAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI--ASFNVVNTTKRD 234

Query: 61  AGYYECVADNPF 72
           AG Y C+     
Sbjct: 235 AGKYRCMIRTEG 246

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 44.0 bits (104), Expect = 4e-07
 Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 14/71 (19%)

Query: 3   GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
           G  I   C +    P   +T+ ++     F             +       I  A    +
Sbjct: 100 GETIMLRCHSWKDKPLVKVTFFQNGKSQKFS----------HLD---PTFSIPQANHSHS 146

Query: 62  GYYECVADNPF 72
           G Y C  +  +
Sbjct: 147 GDYHCTGNIGY 157

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 43.7 bits (103), Expect = 6e-07
 Identities = 11/69 (15%), Positives = 15/69 (21%), Gaps = 16/69 (23%)

Query: 3  GRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
             +T  C     P    I W  +   +                T         A   D+
Sbjct: 19 EDSVTLTCQGARSPESDSIQWFHNGNLIP---------------THTQPSYRFKANNNDS 63

Query: 62 GYYECVADN 70
          G Y C    
Sbjct: 64 GEYTCQTGQ 72

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 43.8 bits (102), Expect = 7e-07
 Identities = 10/70 (14%), Positives = 19/70 (27%), Gaps = 2/70 (2%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
                F C         +            +  ++       +   S + I    ++DAG
Sbjct: 246 ANVAKFLCRQSSGENCDVVVNTLGKRAPAFEG-RILLNPQDKDGSFS-VVITGLRKEDAG 303

Query: 63  YYECVADNPF 72
            Y C A +  
Sbjct: 304 RYLCGAHSDG 313

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 40.4 bits (93), Expect = 1e-05
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 14/85 (16%)

Query: 1   MLGRKITFFCMAEGFPRPHIT-WTKDDIELTFHKYFQV------HEWFLGNNTIKSK--- 50
           + G  +   C         I  W   +          V         + G  ++  +   
Sbjct: 344 VAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGN 403

Query: 51  ----MEIDPATQKDAGYYECVADNP 71
               + ++  T +DAG+Y C+ +  
Sbjct: 404 GTFTVILNQLTSRDAGFYWCLTNGD 428

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 39.6 bits (91), Expect = 2e-05
 Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 2/72 (2%)

Query: 7   TFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWF--LGNNTIKSKMEIDPATQKDAGYY 64
            F C    + +    W     +    +     + F     N+    + ++  T+ D G+Y
Sbjct: 465 HFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWY 524

Query: 65  ECVADNPFAIDR 76
            C          
Sbjct: 525 WCGVKQGHFYGE 536

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 41.8 bits (98), Expect = 2e-06
 Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 16/71 (22%)

Query: 1  MLGRKITFFCMAEGFPRPHIT-WTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
          +    +T  C     P  + T W  ++  ++               +  S   ID AT  
Sbjct: 20 LEKDSVTLKCQGAYSPEDNSTQWFHNESLIS---------------SQASSYFIDAATVN 64

Query: 60 DAGYYECVADN 70
          D+G Y C  + 
Sbjct: 65 DSGEYRCQTNL 75

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 41.4 bits (97), Expect = 4e-06
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 14/70 (20%)

Query: 3   GRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
              I   C + +      +T+ ++  +  +  +              S   I  AT KD+
Sbjct: 103 EDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHH-------------NSDFHIPKATLKDS 149

Query: 62  GYYECVADNP 71
           G Y C     
Sbjct: 150 GSYFCRGLVG 159

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 41.3 bits (96), Expect = 3e-06
 Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 22/81 (27%)

Query: 1   MLGRKITFFCMAEGFPRPHITWTKDDIE-LTFHKY-------FQV-----HEWFLGNNTI 47
           + G  +   C  +      + W+    + L F +         Q+     HE  +     
Sbjct: 51  VAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSI----- 105

Query: 48  KSKMEIDPATQKDAGYYECVA 68
                I      D G Y C  
Sbjct: 106 ----SISNVALADEGEYTCSI 122

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 41.1 bits (96), Expect = 3e-06
 Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 12/74 (16%)

Query: 3  GRKITFFCMAEGFPRPHITWTK--------DDIELTFHKYFQVHEWFLGNNTIKSKMEID 54
          G+ +T  C+        + W          ++  +  +  +Q+        +I     + 
Sbjct: 16 GQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSIT----VP 71

Query: 55 PATQKDAGYYECVA 68
            T +D G Y+C+ 
Sbjct: 72 NVTLQDEGVYKCLH 85

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 41.4 bits (97), Expect = 4e-06
 Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 14/70 (20%)

Query: 3   GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
              I   C +        +T+ ++     +  +              S   I  AT KD+
Sbjct: 103 EDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH-------------NSDFYIPKATLKDS 149

Query: 62  GYYECVADNP 71
           G Y C     
Sbjct: 150 GSYFCRGLVG 159

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 40.6 bits (95), Expect = 9e-06
 Identities = 16/73 (21%), Positives = 21/73 (28%), Gaps = 20/73 (27%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKME---IDPAT 57
          +    +T  C     P    T                  WF   + I S+     ID AT
Sbjct: 20 LEKDSVTLKCQGAYSPEDQSTQ-----------------WFHNESLISSQASSYFIDAAT 62

Query: 58 QKDAGYYECVADN 70
            D+G Y C    
Sbjct: 63 VDDSGEYRCQTQL 75

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 41.5 bits (97), Expect = 4e-06
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 4/70 (5%)

Query: 3   GRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
                  C   G FP PH++W ++  EL         +       + SK++ +  T    
Sbjct: 121 SNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHS- 179

Query: 62  GYYECVADNP 71
             + C+    
Sbjct: 180 --FMCLIKYG 187

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 41.4 bits (96), Expect = 6e-06
 Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 19/73 (26%)

Query: 3  GRKITFFCMAEG-FPRPH---ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
          G   T      G  P P     TWTKDD                 NNT  + + +  AT 
Sbjct: 17 GDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE-------------NNT--ATLTVADATS 61

Query: 59 KDAGYYECVADNP 71
          ++AG Y+    + 
Sbjct: 62 ENAGSYKVTVQDT 74

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 36.7 bits (84), Expect = 2e-04
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 13/89 (14%)

Query: 2   LGRKITFFCM--------AEGFPRPHITWT----KDDIELTFHKYFQVHEWFLGNN-TIK 48
           LG +I+   +        + G P   I +     ++          +V E   G + T  
Sbjct: 198 LGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPD 257

Query: 49  SKMEIDPATQKDAGYYECVADNPFAIDRR 77
             +  + AT  D   + CVA     I+  
Sbjct: 258 GHLFKESATYDDTAKFWCVAKLYQQIEDE 286

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 40.2 bits (93), Expect = 1e-05
 Identities = 12/98 (12%), Positives = 20/98 (20%), Gaps = 22/98 (22%)

Query: 2   LGRKITFFCMAEGFPRPH---ITWTKDDIELT------------FHKYFQVHEWFLGNNT 46
           +G      C  +         + W       T                FQ    F     
Sbjct: 132 VGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVD 191

Query: 47  IKSKME-------IDPATQKDAGYYECVADNPFAIDRR 77
           +   +        +    + D G Y C         R+
Sbjct: 192 LTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRK 229

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 38.3 bits (88), Expect = 7e-05
 Identities = 13/89 (14%), Positives = 22/89 (24%), Gaps = 18/89 (20%)

Query: 1   MLGRKITFFCM---AEGFPRPHITWTKDD-----IELTFHKY---------FQVHEWFLG 43
            +G  +   C+    E      + W          E     Y         FQ     +G
Sbjct: 18  HVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVG 77

Query: 44  NNTIKS-KMEIDPATQKDAGYYECVADNP 71
           +       + +    + D G Y C     
Sbjct: 78  DTFHNDGSLLLQDVQKADEGIYTCEIRLK 106

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 39.2 bits (91), Expect = 2e-05
 Identities = 6/66 (9%), Positives = 12/66 (18%), Gaps = 16/66 (24%)

Query: 6   ITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE 65
            T  C         +   +    L                    +  +          ++
Sbjct: 113 ATLTCEVLEGTDVELKLYQGKEHL----------------RSLRQKTMSYQWTNLRAPFK 156

Query: 66  CVADNP 71
           C A N 
Sbjct: 157 CKAVNR 162

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 38.0 bits (88), Expect = 6e-05
 Identities = 12/79 (15%), Positives = 20/79 (25%), Gaps = 12/79 (15%)

Query: 1  MLGRKITFFC--MAEGFPRPHITWTKDDIELTFHK------YFQVHEWFLGNNTIKSKME 52
           LG  I               + W +    +   K              L N      ++
Sbjct: 9  ALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD----LK 64

Query: 53 IDPATQKDAGYYECVADNP 71
          I   T+ D+G Y     + 
Sbjct: 65 IKNLTRDDSGTYNVTVYST 83

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 39.1 bits (90), Expect = 3e-05
 Identities = 10/70 (14%), Positives = 17/70 (24%), Gaps = 9/70 (12%)

Query: 2  LGRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
           G  +T  C   E      + W         H              +  ++ +      D
Sbjct: 20 PGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWA--------GMGRRLLLRSVQLHD 71

Query: 61 AGYYECVADN 70
          +G Y C    
Sbjct: 72 SGNYSCYRAG 81

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1 Length = 120

 Score = 38.3 bits (88), Expect = 4e-05
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 3  GRKITFFC-MAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
          G      C +     RPH+TW K +         +   W    N     +  +P    D 
Sbjct: 26 GDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDN 85

Query: 62 GYYECVADNPFAI 74
          G Y C A+    +
Sbjct: 86 GSYRCSANFQSNL 98

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 38.4 bits (89), Expect = 5e-05
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHK--YFQVHEWFLGNNTIKSK---MEIDP 55
          ++   +TF       P   + W K   ++   +   F+    F     + +    + I  
Sbjct: 8  VVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYN 66

Query: 56 ATQKDAGYYECVADN 70
           T  D   YE  + N
Sbjct: 67 LTSSDEDEYEMESPN 81

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 35.7 bits (82), Expect = 4e-04
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 13/68 (19%)

Query: 13  EGFPRPHITWTKDDIELTFHKYFQVHE-------WFLGNNTIKS--KMEIDPATQKDAGY 63
           E   +P I W   +  LT      V E        + G   ++S  +  +          
Sbjct: 94  EMVSKPMIYWECSNATLTCE----VLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAP 149

Query: 64  YECVADNP 71
           ++C A N 
Sbjct: 150 FKCKAVNR 157

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 37.8 bits (87), Expect = 9e-05
 Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 4/70 (5%)

Query: 3   GRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
              I   C + G +P+P I W+ +  E        V    +G   + + + +        
Sbjct: 133 DGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIM---RGSSG 189

Query: 62  GYYECVADNP 71
               C   + 
Sbjct: 190 EGVSCTIRSS 199

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4 Length = 122

 Score = 37.2 bits (85), Expect = 1e-04
 Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 3/62 (4%)

Query: 16  PRPHITWTK---DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF 72
            RP++TW K                  W    +     +   P    D G Y C  +   
Sbjct: 43  HRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS 102

Query: 73  AI 74
            +
Sbjct: 103 QV 104

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 36.7 bits (84), Expect = 1e-04
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 7/68 (10%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G  +   C     P   I W  +D  +   +  +       + ++K   E++      +G
Sbjct: 21 GTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE-----QSG 73

Query: 63 YYECVADN 70
          YY C    
Sbjct: 74 YYVCYPRG 81

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 37.2 bits (86), Expect = 1e-04
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 16  PRPHITWTKDDIELT--FHKYFQVH-EWFLGNNTIKS--KMEIDPATQKDAGYYECVADN 70
            +P I W   +  LT    +   V  + + G   ++S  +  +          ++C A N
Sbjct: 107 SKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVN 166

Query: 71  P 71
            
Sbjct: 167 R 167

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 37.1 bits (85), Expect = 1e-04
 Identities = 11/73 (15%), Positives = 18/73 (24%), Gaps = 15/73 (20%)

Query: 3   GRKITFFCM----AEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
           GR     C      E  P    +WT + +                  T  S++ + P  +
Sbjct: 138 GRPTRLSCSLPGSCEAGPPLTFSWTGNALSPL-----------DPETTRSSELTLTPRPE 186

Query: 59  KDAGYYECVADNP 71
                  C     
Sbjct: 187 DHGTNLTCQMKRQ 199

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 36.0 bits (82), Expect = 3e-04
 Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 17/69 (24%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ-KDA 61
          G  +   C  +     ++ W K+  EL               +     + +   ++ +D+
Sbjct: 14 GTSVELTCPLD--SDENLKWEKNGQELP------------QKH--DKHLVLQDFSEVEDS 57

Query: 62 GYYECVADN 70
          GYY C    
Sbjct: 58 GYYVCYTPA 66

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 36.1 bits (83), Expect = 5e-04
 Identities = 12/88 (13%), Positives = 21/88 (23%), Gaps = 13/88 (14%)

Query: 1  MLGRKITFFCM-------AEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEI 53
           L    T  C+              +I W  +   +   +Y  +      N T  S    
Sbjct: 16 QLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTII------NRTASSVTFT 69

Query: 54 DPATQKDAGYYECVADNPFAIDRRGFRT 81
          D A+         +       +  G   
Sbjct: 70 DIASLNIQLTCNILTFGQLEQNVYGITI 97

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 35.3 bits (81), Expect = 6e-04
 Identities = 11/70 (15%), Positives = 17/70 (24%), Gaps = 16/70 (22%)

Query: 3   GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
             ++   C  E         W      L+             N T+     I        
Sbjct: 124 TCELHLTCSVEDADDNVSFRWEALGNTLSSQ----------PNLTVSWDPRIS-----SE 168

Query: 62  GYYECVADNP 71
             Y C+A+N 
Sbjct: 169 QDYTCIAENA 178

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 34.5 bits (79), Expect = 7e-04
 Identities = 13/82 (15%), Positives = 18/82 (21%), Gaps = 16/82 (19%)

Query: 2  LGRKITFFCMAEGFPRP--HITWTKDDIEL-TFHKYFQVHEW--------FLGNNTIKSK 50
           G  I   C           + W + D  L   +     H                +   
Sbjct: 17 KGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLT-- 74

Query: 51 MEIDPATQKDAGYYEC-VADNP 71
            +   T  D G Y C     P
Sbjct: 75 --LQSLTVNDTGEYFCIYHTYP 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	83
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.83
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.83
1he7_A	126	High affinity nerve growth factor receptor; transf	99.81
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.81
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.77
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.76
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.75
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.75
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.74
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.74
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.73
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.73
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.73
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.73
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.73
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.72
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.72
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.71
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.7
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.7
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.7
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.7
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.7
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.69
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.69
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.69
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.69
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.68
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.68
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.68
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.67
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.66
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.66
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.65
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.65
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.65
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.64
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.64
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.63
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.63
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.62
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.61
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.61
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.6
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.6
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.6
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.59
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.59
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.59
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.58
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.58
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.58
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.58
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.58
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.57
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.57
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.57
2ens_A	96	Advanced glycosylation END product-specific recept	99.57
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.57
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.57
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.57
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.56
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.56
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.56
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.55
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.55
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.55
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.55
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.54
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.54
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.54
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.54
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.53
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.53
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.53
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.53
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.53
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.53
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.53
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.52
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.52
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.52
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.51
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.51
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.51
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.51
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.51
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.51
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.51
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.5
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.5
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.5
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.5
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.5
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.5
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.5
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.5
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.49
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.49
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.49
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.49
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.48
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.48
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.48
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.48
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.48
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.48
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.48
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.48
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.47
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.47
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.47
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.46
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.46
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.46
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.46
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.46
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.46
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.46
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.46
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.45
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.45
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.45
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.45
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.45
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.44
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.44
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.44
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.44
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.44
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.44
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.43
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.43
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.43
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.43
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.43
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.42
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.42
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.42
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.42
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.42
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.42
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.41
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.41
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.41
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.41
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.41
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.4
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.4
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.4
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.4
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.4
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.39
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.39
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.39
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.39
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.39
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.38
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.38
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.38
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.38
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.38
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.38
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.38
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.37
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.37
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.37
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.37
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.37
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.36
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.36
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.36
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.36
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.35
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.35
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.35
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.35
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.35
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.35
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.35
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.34
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.34
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.34
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.34
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.33
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.33
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.33
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.33
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.32
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.32
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.32
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.32
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.32
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.32
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.31
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.31
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.31
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.3
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.3
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.3
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.29
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.29
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.29
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.29
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.29
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.28
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.28
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.28
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.27
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.27
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.27
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.27
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.26
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.26
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.26
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.26
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.26
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.26
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	99.26
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.25
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.25
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.25
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.24
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.24
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.24
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.24
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.24
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.24
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.24
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.24
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.23
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.23
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.23
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.23
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.23
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.22
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.22
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.22
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.22
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.22
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.21
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.21
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.21
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.21
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.21
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.21
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.2
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.2
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.2
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.19
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.19
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.19
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.19
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.19
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.19
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.18
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	99.18
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.18
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	99.18
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.17
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.17
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.17
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.17
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.17
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.17
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.16
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.16
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.16
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.16
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	99.16
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.15
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.15
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.14
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.14
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.14
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.14
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.14
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.14
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.14
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.13
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.13
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.13
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.13
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.13
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.13
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	99.13
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.12
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.12
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.12
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.12
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	99.12
3khq_A	133	B-cell antigen receptor complex-associated protei	99.12
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	99.12
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	99.12
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.12
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.11
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.11
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.11
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.11
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.11
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.11
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.11
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	99.11
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.1
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.1
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.1
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.1
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.1
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.09
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	99.09
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.09
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.08
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.08
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.08
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.08
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	99.08
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	99.08
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.08
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.08
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.07
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.07
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.07
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.07
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.07
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.07
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.07
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	99.07
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.06
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.06
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.06
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	99.06
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.06
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	99.06
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.06
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.06
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.05
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.05
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.04
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.04
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	99.04
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.04
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	99.04
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	99.03
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.03
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.03
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.03
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.03
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.03
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.03
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.02
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.02
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.02
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.02
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.02
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.01
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.01
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.01
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.01
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	99.01
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.0
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	99.0
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	99.0
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	99.0
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.0
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.0
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.0
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.0
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.99
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	98.99
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.99
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.99
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.99
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.99
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	98.99
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	98.99
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.99
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.98
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	98.98
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.98
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	98.98
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.97
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.97
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.97
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.96
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.96
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	98.96
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	98.96
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	98.96
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	98.95
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.95
1lk2_B	99	Beta-2-microglobulin; class I MHC-peptide complex,	98.95
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.95
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	98.95
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.95
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.95
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.94
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.94
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	98.94
2jjs_C	127	Leukocyte surface antigen CD47; signal regulatory	98.94
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	98.94
1xt5_A	135	Variable region-containing chitin-binding protein	98.94
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	98.94
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	98.93
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.93
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	98.93
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.93
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.93
1bii_B	119	Beta-2 microglobulin, MHC class I H-2DD; complex (	98.93
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	98.93
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	98.93
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.92
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.92
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.92
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.92
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	98.92
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.91
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.91
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.91
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.91
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.91
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.91
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.91
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.91
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.91
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.91
1xiw_B	79	T-cell surface glycoprotein CD3 delta chain; CD3-e	98.91
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	98.9
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.9
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	98.43
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	98.9
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.9
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.89
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.89
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	98.89
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	98.88
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.88
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.88
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.88
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.88
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	98.87
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.87
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.87
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.87
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.86
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	98.86
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	98.86
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.85
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.85
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	98.85
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	98.85
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.85
1k5n_B	100	Beta-2-microglobulin, light chain; MHC(major histo	98.85
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	98.84
3ux9_B	256	SCFV antibody; five helices, long loop connecting	98.84
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.84
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.84
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	98.84
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.84
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.83
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	98.83
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.82
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.82
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.82
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	98.82
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.81
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.81
3p73_B	99	Beta-2-microglobulin; IG-like C1-type (immunoglobu	98.81
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	98.81
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.8
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.8
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.79
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.79
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.79
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.78
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.78
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	98.78
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	98.77
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.77
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.77
3gbl_A	97	BETA2-microglobulin; immune response, immunoglobul	98.77
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.77
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	98.76
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.76
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.76
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	98.76
3bj9_1	116	Immunoglobulin IOTA chain, immunoglobulin lambda-	98.76
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.75
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	98.74
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.74
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.74
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.74
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.74
1a2y_B	116	IGG1-kappa D1.3 FV (heavy chain); complex (immunog	98.74
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.74
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	98.73
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	98.73

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.83  E-value=1.4e-19  Score=81.33  Aligned_cols=76  Identities=21%  Similarity=0.407  Sum_probs=61.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccce--EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKY--FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+.....  +.+..     ....++|.|.+++.+|.|.|.|.+.|..|.....+
T Consensus        19 ~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~-----~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   93 (100)
T 3knb_A           19 EGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIEN-----TDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATV   93 (100)
T ss_dssp             TTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEE-----CSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeec-----ccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEE
Confidence            589999999999999999999999998875432  32221     11245799999999999999999999999887776


Q ss_pred             EEe
Q psy11826         80 RTD   82 (83)
Q Consensus        80 ~~~   82 (83)
                      .|.
T Consensus        94 ~l~   96 (100)
T 3knb_A           94 NIH   96 (100)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.83  E-value=2.7e-18  Score=77.41  Aligned_cols=82  Identities=17%  Similarity=0.341  Sum_probs=63.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .+..+.+.|.+.|.|.|.+.|++++..+...................+.|.|.+++.+|+|.|.|.+.|..|.....+.|
T Consensus        15 ~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   94 (103)
T 1wwb_X           15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA   94 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             ECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEE
Confidence            35678899999999999999999999887654332211112333445679999999999999999999999998888776


Q ss_pred             eC
Q psy11826         82 DY   83 (83)
Q Consensus        82 ~~   83 (83)
                      .+
T Consensus        95 ~V   96 (103)
T 1wwb_X           95 HF   96 (103)
T ss_dssp             CC
T ss_pred             EE
Confidence            53

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.81  E-value=5.5e-18  Score=78.74  Aligned_cols=81  Identities=15%  Similarity=0.261  Sum_probs=63.1

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEe--cCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWF--LGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      +..+.+.|.+.|.|.|.+.|+++|..+............  .........|.|..+...|+|.|.|.+.|..|.....+.
T Consensus        15 ~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~   94 (126)
T 1he7_A           15 MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIM   94 (126)
T ss_dssp             CCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEEE
Confidence            457889999999999999999999998876543322111  011123467999999999999999999999999988887


Q ss_pred             EeC
Q psy11826         81 TDY   83 (83)
Q Consensus        81 ~~~   83 (83)
                      |.|
T Consensus        95 l~v   97 (126)
T 1he7_A           95 AAF   97 (126)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            754

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.81  E-value=4.7e-19  Score=80.46  Aligned_cols=76  Identities=21%  Similarity=0.321  Sum_probs=62.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+....+..+...     ....+|.|.+++.+|.|.|.|.+.|..|.....+.|
T Consensus        27 ~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l  101 (107)
T 3knb_B           27 SGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPAD-----GAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAV  101 (107)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEE-----TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeec-----CceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEE
Confidence            588999999999999999999999999877655443221     124579999999999999999999999988776655


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       102 ~  102 (107)
T 3knb_B          102 T  102 (107)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.77  E-value=4.1e-17  Score=72.74  Aligned_cols=77  Identities=16%  Similarity=0.044  Sum_probs=61.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+............ .   ....|.|.+++.+|.|.|.|.+.|..|.......|
T Consensus        19 ~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~-~---~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l   94 (99)
T 1g1c_A           19 QGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPE-D---NVCELVIRDVTGEDSASIMVKAINIAGETSSHAFL   94 (99)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEE-T---TEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcC-C---CEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEEE
Confidence            5889999999999999999999999988765543332211 1   14579999999999999999999999987776655


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        95 ~   95 (99)
T 1g1c_A           95 L   95 (99)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.76  E-value=5.3e-18  Score=75.03  Aligned_cols=74  Identities=22%  Similarity=0.270  Sum_probs=59.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--EEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++  ..+.........       ...+.|.|..+..+|+|.|.|.+.|..|.....+
T Consensus        16 ~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~-------~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   88 (93)
T 1wit_A           16 AGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAK-------SSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIF   88 (93)
T ss_dssp             TTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEE-------TTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEec-------CCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEE
Confidence            5889999999999999999999998  776554322111       1136799999999999999999999999887776


Q ss_pred             EEe
Q psy11826         80 RTD   82 (83)
Q Consensus        80 ~~~   82 (83)
                      .|.
T Consensus        89 ~l~   91 (93)
T 1wit_A           89 EVI   91 (93)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.75  E-value=3.4e-17  Score=73.52  Aligned_cols=76  Identities=18%  Similarity=0.235  Sum_probs=61.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.......+...     .....|.|.+++.+|.|.|.|.+.|..|.......|
T Consensus        22 ~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   96 (103)
T 3qp3_A           22 CGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNT-----SGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATL   96 (103)
T ss_dssp             TTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEEC-----CCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEE
Confidence            588999999999999999999999998876554433221     113579999999999999999999999988776655


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        97 ~   97 (103)
T 3qp3_A           97 D   97 (103)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.75  E-value=5.8e-17  Score=74.02  Aligned_cols=75  Identities=20%  Similarity=0.291  Sum_probs=60.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+....+..+..     ......|.|.+++.+|.|.|.|.+.|..|.....+.|
T Consensus        21 ~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l   95 (114)
T 2cqv_A           21 AGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN-----SENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL   95 (114)
T ss_dssp             TTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEE-----CSSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEE
T ss_pred             CCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEE-----cCCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEE
Confidence            58899999999999999999999998877654443321     1114579999999999999999999999987665554

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.74  E-value=3e-16  Score=69.79  Aligned_cols=76  Identities=17%  Similarity=0.284  Sum_probs=61.1

Q ss_pred             CCceEEEEeEeCcc-CCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGF-PRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+. |.|.+.|++++..+.......+...  .   ....|.|.+++.+|.|.|.|.+.|..|.......
T Consensus        15 ~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~--~---~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   89 (97)
T 2bk8_A           15 EGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYE--D---GVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAE   89 (97)
T ss_dssp             TTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEE--T---TEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             CCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEc--C---CeEEEEEecCChhhCeEEEEEEECCCCeEeEEEE
Confidence            58899999999997 8999999999998876555443221  1   1457999999999999999999999998877665


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus        90 l~   91 (97)
T 2bk8_A           90 LF   91 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.74  E-value=1.2e-16  Score=71.27  Aligned_cols=77  Identities=21%  Similarity=0.384  Sum_probs=60.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+..........    .......|.|.+++.+|.|.|.|.+.|..|.....+.|
T Consensus        19 ~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~----~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~l   94 (99)
T 1u2h_A           19 EGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEE----AEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARL   94 (99)
T ss_dssp             TTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEE----CGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEE----CCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEEE
Confidence            58899999999999999999999998876543321111    11123579999999999999999999999987776655


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        95 ~   95 (99)
T 1u2h_A           95 E   95 (99)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.73  E-value=6.3e-17  Score=72.25  Aligned_cols=77  Identities=19%  Similarity=0.281  Sum_probs=60.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+...........    ......|.|..++.+|.|.|.|.+.|..|.....+.|
T Consensus        19 ~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l   94 (100)
T 2kdg_A           19 EGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVS----EKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQL   94 (100)
T ss_dssp             TTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEE----TTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEc----CCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEE
Confidence            588999999999999999999999988776432221111    1113579999999999999999999999987776665


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        95 ~   95 (100)
T 2kdg_A           95 D   95 (100)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=1.9e-16  Score=72.71  Aligned_cols=75  Identities=23%  Similarity=0.399  Sum_probs=59.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+.. ....+..     ....+.|.|.++..+|.|.|.|.+.|..|.....+.|
T Consensus        38 ~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~-~~~~~~~-----~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l  111 (118)
T 2e7c_A           38 VGEQLNLVVPFQGKPRPQVVWTKGGAPLDT-SRVHVRT-----SDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRI  111 (118)
T ss_dssp             SSSCEEEEEEEEEESCCEEEEEETTEECCC-SSCEEEE-----CSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEE
T ss_pred             CCCEEEEEEEEccCCCCEEEEEECCEECCC-CcEEEEE-----CCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEE
Confidence            588999999999999999999999988863 2222211     1124579999999999999999999999987766655


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       112 ~  112 (118)
T 2e7c_A          112 R  112 (118)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.73  E-value=1.3e-16  Score=71.12  Aligned_cols=76  Identities=25%  Similarity=0.343  Sum_probs=61.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.......+...  .   ....|.|.+++.+|.|.|.|.+.|..|.......|
T Consensus        20 ~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~--~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l   94 (99)
T 3puc_A           20 SDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSED--K---GGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL   94 (99)
T ss_dssp             SSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEE--T---TEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEe--C---CEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEE
Confidence            588999999999999999999999988876555443321  1   13479999999999999999999999987766655


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        95 ~   95 (99)
T 3puc_A           95 T   95 (99)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.72  E-value=9.4e-16  Score=70.38  Aligned_cols=78  Identities=17%  Similarity=0.301  Sum_probs=60.4

Q ss_pred             ceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826          4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus         4 ~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      ....+.|.+.|.|.|.+.|+++|..+............ ......+.|.|.++..+|.|.|.|.+.|..|.....+.+.
T Consensus        21 ~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~   98 (118)
T 1wwc_A           21 LEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQ-EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH   98 (118)
T ss_dssp             CEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEE-CSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             cceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEec-cCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEE
Confidence            34678899999999999999999988765543332211 1122356899999999999999999999999988877754

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=3.2e-17  Score=73.18  Aligned_cols=72  Identities=22%  Similarity=0.419  Sum_probs=57.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+........     .   ....|.|.++..+|.|.|.|.+.|..|.....+.|
T Consensus        25 ~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~-----~---~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l   96 (99)
T 2yr3_A           25 EGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE-----A---GVAELHIQDALPEDHGTYTCLAENALGQVSCSAWV   96 (99)
T ss_dssp             TTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEE-----T---TEEEEEECSCCTTCCBCEEEEEECSSCEEEEECCE
T ss_pred             CCCeEEEEEEEeeeCCCeEEEEECCEECcccceEee-----C---CeEEEEECCCChhhCEEEEEEEEECCCeEEEEEEE
Confidence            688999999999999999999999877764332110     1   13579999999999999999999999987666544

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.71  E-value=4.4e-16  Score=71.42  Aligned_cols=77  Identities=23%  Similarity=0.458  Sum_probs=60.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecc-cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTF-HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.. ..+..+..    ......+|.|.+++.+|.|.|.|.+.|..|.....+.
T Consensus        29 ~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  104 (116)
T 2kkq_A           29 EGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQ----DNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTR  104 (116)
T ss_dssp             TTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEE----CTTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEe----CCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEE
Confidence            588999999999999999999999988764 23333322    1112457999999999999999999999998776665


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus       105 l~  106 (116)
T 2kkq_A          105 LD  106 (116)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.70  E-value=2.4e-16  Score=68.75  Aligned_cols=65  Identities=25%  Similarity=0.415  Sum_probs=52.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .|+.+.|.|.+.+ |.|.+.|+++|..+.......+..  ..   ....|.|.+++.+|+|.|.|.+.|..
T Consensus        10 ~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~--~~---~~~~L~I~~~~~~D~G~Y~C~a~n~~   74 (84)
T 2lu7_A           10 PGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQ--AG---ARQVLRVQGARSGDAGEYLCDAPQDS   74 (84)
T ss_dssp             TTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEE--CS---SCEEEEESSCSSTTCEEEEEECTTTC
T ss_pred             cCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEee--cC---CeEEEEecCCCCcccEEEEEEECCEE
Confidence            6899999999865 888999999999998766554432  11   13579999999999999999986643

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.70  E-value=5.7e-17  Score=72.42  Aligned_cols=77  Identities=21%  Similarity=0.396  Sum_probs=59.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+..............    ...|.|..++.+|.|.|.|.+.|..|.....+.|
T Consensus        22 ~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l   97 (100)
T 3caf_A           22 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ----HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   97 (100)
T ss_dssp             TTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGG----GTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecC----eEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEEE
Confidence            589999999999999999999999988765432110000001    1369999999999999999999999988777665


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        98 ~   98 (100)
T 3caf_A           98 D   98 (100)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.70  E-value=6e-16  Score=73.98  Aligned_cols=76  Identities=25%  Similarity=0.440  Sum_probs=61.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.......+..    .......|.|.+++..|.|.|.|.+.|..|.....+.|
T Consensus        55 ~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l  130 (154)
T 1fhg_A           55 EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDY----DEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL  130 (154)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEE----CTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEE----CCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEEE
Confidence            58889999999999999999999998887655444321    11124689999999999999999999999987666554

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.70  E-value=4.3e-17  Score=73.77  Aligned_cols=76  Identities=28%  Similarity=0.453  Sum_probs=60.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.......+..     ......|.|.+++.+|.|.|.|.+.|..|.....+.|
T Consensus        28 ~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l  102 (106)
T 1nct_A           28 EGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT-----TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL  102 (106)
T ss_dssp             SSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEE-----CSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEE
T ss_pred             CCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEE-----CCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEE
Confidence            58899999999999999999999998776554444322     1123589999999999999999999999987766655


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       103 ~  103 (106)
T 1nct_A          103 T  103 (106)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.69  E-value=1.3e-16  Score=70.77  Aligned_cols=71  Identities=21%  Similarity=0.442  Sum_probs=58.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.| |.+.|++++..+....+..+.         ...|.|.+++.+|.|.|.|.+.|..|.....+.|
T Consensus        23 ~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~---------~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l   92 (95)
T 2ckn_A           23 PGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT---------GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSV   92 (95)
T ss_dssp             TTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC---------SSEEEESSCCGGGSEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe---------CCEEEECCCChHHCEEEEEEeccCCCcEEEEEEE
Confidence            588999999998887 799999999877654433221         2379999999999999999999999988777766


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        93 ~   93 (95)
T 2ckn_A           93 N   93 (95)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.69  E-value=2.3e-15  Score=68.17  Aligned_cols=81  Identities=21%  Similarity=0.297  Sum_probs=58.3

Q ss_pred             CCceEEEEeEeCccCC---CeEEEEeCCEEecc---cceEEEEEEecC-CCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPR---PHITWTKDDIELTF---HKYFQVHEWFLG-NNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~---~~~~w~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.|.   |.+.|++++.....   ...+.+...... .......|.|.+++.+|+|.|.|.+.|..|.
T Consensus        18 ~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   97 (108)
T 3cx2_A           18 VGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKF   97 (108)
T ss_dssp             TTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             CCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEEEecCCCc
Confidence            5899999999999988   99999997632211   122332221111 2223568999999999999999999999999


Q ss_pred             eeeEEEEe
Q psy11826         75 DRRGFRTD   82 (83)
Q Consensus        75 ~~~~~~~~   82 (83)
                      ..+.+.|.
T Consensus        98 ~~~~~~L~  105 (108)
T 3cx2_A           98 DCSNFNLT  105 (108)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEE
Confidence            88877664

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=3.2e-16  Score=71.11  Aligned_cols=75  Identities=25%  Similarity=0.383  Sum_probs=58.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecc-cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTF-HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.. .....+...    ......|.|..++.+|.|.|.|.+.|..|.....+.
T Consensus        22 ~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~   97 (110)
T 2dm2_A           22 EGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRD----LDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGR   97 (110)
T ss_dssp             TTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEEC----TTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECCC
T ss_pred             CCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEEC----CCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEEE
Confidence            588999999999999999999999887765 233333221    112357999999999999999999999988765443

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.69  E-value=1.2e-15  Score=76.00  Aligned_cols=74  Identities=20%  Similarity=0.327  Sum_probs=60.5

Q ss_pred             CCceEEEEeEeCcc-CCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGF-PRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+. |.|.+.|++++..+......       .......+|.|.+++.+|.|.|.|.+.|..|...+...
T Consensus       130 ~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~-------~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  202 (207)
T 3rbs_A          130 GECNVLLKCKVANIKKETHIVWYKDEREISVDEKH-------DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLK  202 (207)
T ss_dssp             TTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCC-------CCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCce-------EcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEE
Confidence            57889999999998 99999999999988654321       11223457999999999999999999999999888776


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus       203 L~  204 (207)
T 3rbs_A          203 LV  204 (207)
T ss_dssp             EC
T ss_pred             Ee
Confidence            63

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=1.4e-16  Score=71.19  Aligned_cols=72  Identities=21%  Similarity=0.353  Sum_probs=56.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+... ......    .    ...|.|..++.+|.|.|.|.+.|..|.....+.
T Consensus        22 ~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~----~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~   93 (100)
T 2edj_A           22 VDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ----E----QGTLQIKNLRISDTGTYTCVATSSSGETSWSAV   93 (100)
T ss_dssp             SSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEEC----T----TCCEEEESCCTTTCCEEEEEEECSSCCCBCCEE
T ss_pred             CCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEc----C----CCEEEEccCCcccCEEEEEEEEcCCCCEEEEEE
Confidence            5889999999999999999999998877632 222111    1    136999999999999999999999987766555


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus        94 l   94 (100)
T 2edj_A           94 L   94 (100)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=5.6e-16  Score=69.25  Aligned_cols=71  Identities=21%  Similarity=0.454  Sum_probs=57.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.| |.+.|++++..+.......+.         ...|.|..++.+|.|.|.|.+.|..|.....+.|
T Consensus        17 ~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~---------~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l   86 (99)
T 2cr3_A           17 PGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT---------GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSV   86 (99)
T ss_dssp             TTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC---------SSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE---------CCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence            588999999998876 799999999777654433321         2379999999999999999999999987777665


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        87 ~   87 (99)
T 2cr3_A           87 N   87 (99)
T ss_dssp             C
T ss_pred             E
Confidence            4

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.68  E-value=9.6e-17  Score=72.53  Aligned_cols=73  Identities=26%  Similarity=0.477  Sum_probs=50.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+..........   .    ...|.|.+++.+|.|.|.|.+.|..|.......|
T Consensus        24 ~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~---~----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l   96 (108)
T 3kvq_A           24 IGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD---G----NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF   96 (108)
T ss_dssp             TTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEET---T----TTEEEECSCCGGGCEEEEEEEC----CEEEEEEE
T ss_pred             CCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeC---C----CcEEEEeecCcccCEEEEEEEEeCCCceEEEEEE
Confidence            58899999999999999999999988776544332211   1    2469999999999999999999999987766554

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.67  E-value=8.4e-16  Score=67.68  Aligned_cols=61  Identities=25%  Similarity=0.425  Sum_probs=52.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.....              ..|.|.+++.+|.|.|.|.+.|..|...
T Consensus        17 ~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~--------------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~   77 (91)
T 3bfo_A           17 PGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK--------------KLYMVPYVDLEHQGTYWCHVYNDRDSQD   77 (91)
T ss_dssp             TTSCEEEECEEECSSCCEEEEEETTEECTTCCS--------------SEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             CCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC--------------CeEEECCCCHHhCEEEEEEEEcCCCCEE
Confidence            688999999999999999999999987765431              3689999999999999999999988644

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.66  E-value=2.8e-16  Score=69.49  Aligned_cols=64  Identities=17%  Similarity=0.418  Sum_probs=50.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.+.|.|.+.+ |.|.+.|+++|..+.......+...  +   ...+|.|.++..+|+|.|.|.+.|.
T Consensus        20 ~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~--~---~~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           20 TSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENE--G---PHRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             TTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEE--T---TEEEEEESSCCGGGCSEEEEECSSC
T ss_pred             CCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEec--C---CeEEEEeCCCChhhcEEEEEEEcce
Confidence            5899999999855 8889999999998877655444321  1   1357999999999999999998664

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=3.3e-15  Score=66.99  Aligned_cols=73  Identities=21%  Similarity=0.225  Sum_probs=55.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+  .|.|.+.|+++|..+....+..+..  .   .....|.|.++..+|.|.|.|.+.|........+.+
T Consensus        21 ~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~--~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~~~~~a~L~V   93 (100)
T 2yuz_A           21 LGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQ--K---GRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHV   93 (100)
T ss_dssp             TTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEE--C---SSEEEEEESSCCGGGCSEEEEEESSSCCCEEEEEEE
T ss_pred             CCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEE--e---CCEEEEEECCCChhhCEEEEEEEcCCCeeEEEEEEE
Confidence            58889999998  8889999999999987665554432  1   113579999999999999999999984344444443

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=1.4e-16  Score=72.19  Aligned_cols=76  Identities=22%  Similarity=0.436  Sum_probs=58.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+...........    ......|.|.+++.+|.|.|.|.+.|..|.....+.|
T Consensus        23 ~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l   98 (110)
T 2dm3_A           23 EGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVR----ENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLEL   98 (110)
T ss_dssp             SSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEEC----TTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECCEE
T ss_pred             CCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEe----cCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEE
Confidence            588899999999999999999999887765443222211    1113579999999999999999999999887665544

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.65  E-value=3.3e-15  Score=66.17  Aligned_cols=69  Identities=26%  Similarity=0.460  Sum_probs=55.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+  .|.+.|++++..+.........         ...|.|.+++.+|+|.|.|.+.|..|.....+.|
T Consensus        15 ~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~---------~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l   83 (95)
T 4hwu_A           15 PGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLI---------GEYLQIKGATPRDSGLYACTAARTVDSETWIFMV   83 (95)
T ss_dssp             TTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEE---------TTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             CCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEe---------CCEEEECcCCcccCEEEEEEEccCCCcEEEEEEE
Confidence            6899999999876  5799999999888665443321         1369999999999999999999999877666655

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.65  E-value=5.8e-15  Score=68.62  Aligned_cols=81  Identities=26%  Similarity=0.352  Sum_probs=56.8

Q ss_pred             CCceEEEEeEeCcc---CCCeEEEEeCCEEe-c--ccceEEEEEEe-cCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGF---PRPHITWTKDDIEL-T--FHKYFQVHEWF-LGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~---~~~~~~w~~~~~~~-~--~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      +|+.+.|.|.+.+.   |.|.|.|+++.... .  ....+.+.... .........|.|.++...|+|.|.|.+.|..|.
T Consensus        21 eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevsn~~g~  100 (126)
T 2dav_A           21 VGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKF  100 (126)
T ss_dssp             TTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCE
T ss_pred             CCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEEEEEeCCCc
Confidence            58899999998764   89999999964111 1  11233332211 122334578999999999999999999999888


Q ss_pred             eeeEEEEe
Q psy11826         75 DRRGFRTD   82 (83)
Q Consensus        75 ~~~~~~~~   82 (83)
                      ..+.+.|.
T Consensus       101 ~~~~~~L~  108 (126)
T 2dav_A          101 DSCSFDLE  108 (126)
T ss_dssp             EEECCEEE
T ss_pred             EEEEEEEE
Confidence            77665553

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=6e-16  Score=71.01  Aligned_cols=71  Identities=25%  Similarity=0.464  Sum_probs=56.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+... .......        ...|.|.+++.+|.|.|.|.+.|..|.....+.
T Consensus        22 ~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~--------~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   93 (118)
T 2eo9_A           22 VDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLE--------NGVLQIRYAKLGDTGRYTCIASTPSGEATWSAY   93 (118)
T ss_dssp             TTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEE--------TTEEEEESCCGGGCCCEEEEEECSSCEEEEECC
T ss_pred             CCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEcc--------CCEEEEccCCcCCCEEEEEEEEcCCCcEEEEEE
Confidence            5889999999999999999999998877542 2222211        126999999999999999999999988665443

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.64  E-value=1.1e-14  Score=71.94  Aligned_cols=77  Identities=19%  Similarity=0.373  Sum_probs=61.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.......+....    ...+.|.|..++.+|.|.|.|.+.|..|.....+.|
T Consensus       131 ~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l  206 (212)
T 2r15_A          131 EGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEA----GRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV  206 (212)
T ss_dssp             TTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEET----TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             cCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcC----CCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEE
Confidence            4788999999999999999999999988766544433210    113589999999999999999999999988776655


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       207 ~  207 (212)
T 2r15_A          207 S  207 (212)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.63  E-value=3.2e-15  Score=66.55  Aligned_cols=71  Identities=25%  Similarity=0.435  Sum_probs=54.2

Q ss_pred             CCceEEEEeEeC-ccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+. +.|.+.+.|++++..........          ....|.|.+++.+|.|.|.|.+.|..|.......
T Consensus        24 ~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~----------~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   93 (98)
T 1gl4_B           24 PGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD----------FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTAT   93 (98)
T ss_dssp             TTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEE----------ETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             cCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCceeec----------CCCEEEEeCCChhhCEEEEEEecCCCCccccEEE
Confidence            689999999988 68999999998753332221111          0237999999999999999999999998776665


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus        94 l~   95 (98)
T 1gl4_B           94 LH   95 (98)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.63  E-value=6.4e-15  Score=65.27  Aligned_cols=65  Identities=18%  Similarity=0.150  Sum_probs=51.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .|+.+.|.|.+.+ +.|.+.|+++|..+....+..+...  .   ....|.|.++..+|+|.|.|.+.|..
T Consensus        19 ~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~--g---~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T 1waa_A           19 VGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIED--G---KKHILILHNCQLGMTGEVSFQAANTK   83 (93)
T ss_dssp             TTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEE--T---TEEEEEECSCCGGGCEEEEEEETTEE
T ss_pred             CCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEE--C---CEEEEEECCCChhhCEEEEEEECCCc
Confidence            5889999999876 4578999999998877655544321  1   13579999999999999999998854

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.62  E-value=1.4e-14  Score=72.12  Aligned_cols=75  Identities=23%  Similarity=0.446  Sum_probs=59.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccc--eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK--YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+....  ...+..  ..   ..+.|.|..+..+|.|.|.|.+.|..|.....+
T Consensus        32 ~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~--~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  106 (215)
T 3mtr_A           32 EGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN--TP---SASYLEVTPDSENDFGNYNCTAVNRIGQESLEF  106 (215)
T ss_dssp             TTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEE--ET---TEEEEEECCCSGGGCEEEEEEEECSSCEEEEEE
T ss_pred             CCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEec--CC---CeeEEEEecCChhhCeEEEEEEEECCCceEEEE
Confidence            58999999999999999999999998887542  222221  01   146799999999999999999999999876665


Q ss_pred             EE
Q psy11826         80 RT   81 (83)
Q Consensus        80 ~~   81 (83)
                      .+
T Consensus       107 ~l  108 (215)
T 3mtr_A          107 IL  108 (215)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.61  E-value=7.4e-15  Score=73.04  Aligned_cols=77  Identities=16%  Similarity=0.073  Sum_probs=51.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccc--eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK--YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+....  ..++.   .........+.+..++.+|.|.|+|.+.|..|..+..+
T Consensus       120 ~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~---~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v~  196 (203)
T 4fa8_A          120 DFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVM---KEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVY  196 (203)
T ss_dssp             CSCCEEEEEEEEEESCCEEEECCC------------CCE---ECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEEE
T ss_pred             CCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEE---EeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEE
Confidence            58899999999999999999988765443211  11111   11112234566778999999999999999999988765


Q ss_pred             EE
Q psy11826         80 RT   81 (83)
Q Consensus        80 ~~   81 (83)
                      .-
T Consensus       197 vs  198 (203)
T 4fa8_A          197 VS  198 (203)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.61  E-value=6e-16  Score=71.40  Aligned_cols=80  Identities=24%  Similarity=0.360  Sum_probs=61.1

Q ss_pred             CCceEEEEeEeCccCCCe-EEEEeCCEEeccc--ceEEEEEEecCCCeEEEEEEEccCCCCCC-eEEEEEeeCCCcceee
Q psy11826          2 LGRKITFFCMAEGFPRPH-ITWTKDDIELTFH--KYFQVHEWFLGNNTIKSKMEIDPATQKDA-GYYECVADNPFAIDRR   77 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~-~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~~-g~y~C~~~~~~g~~~~   77 (83)
                      .|+.+.|.|.+.+.|.|. +.|++++..+...  .++.+.... ......+.|.|.+++.+|. |.|.|.+.|..|....
T Consensus        27 ~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G~~~~  105 (122)
T 2cry_A           27 HGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIS-TEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTE  105 (122)
T ss_dssp             TTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEE-ETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEE
T ss_pred             cCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEec-CCCceEEEEEEcCCChhhCCceEEEEEECCCCeEEE
Confidence            588899999999999997 9999998877642  333332111 1223356899999999998 9999999999998877


Q ss_pred             EEEEe
Q psy11826         78 GFRTD   82 (83)
Q Consensus        78 ~~~~~   82 (83)
                      .+.|.
T Consensus       106 ~~~l~  110 (122)
T 2cry_A          106 IIRLK  110 (122)
T ss_dssp             EECCC
T ss_pred             EEEEE
Confidence            66553

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.60  E-value=2.9e-14  Score=64.37  Aligned_cols=80  Identities=16%  Similarity=0.237  Sum_probs=55.9

Q ss_pred             CCceEEEEeEeCcc--CCCeEEEEeCCEEecccceEEEEEEecC---CCeEEEEEEEccCCCCCCeEEEEEeeCCCcce-
Q psy11826          2 LGRKITFFCMAEGF--PRPHITWTKDDIELTFHKYFQVHEWFLG---NNTIKSKMEIDPATQKDAGYYECVADNPFAID-   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~-   75 (83)
                      .|+.+.|.|.+.+.  +.+.+.|++++..+..............   .......|.|.+++.+|.|.|.|.+.|..|.. 
T Consensus        24 ~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~  103 (112)
T 3so5_A           24 XGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSY  103 (112)
T ss_dssp             TTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCCeEEEEEEeCCCcEE
Confidence            58899999998854  4678999999988765432111111011   11224689999999999999999999998873 


Q ss_pred             eeEEEE
Q psy11826         76 RRGFRT   81 (83)
Q Consensus        76 ~~~~~~   81 (83)
                      .....|
T Consensus       104 s~~~~l  109 (112)
T 3so5_A          104 SVXAXL  109 (112)
T ss_dssp             CCCEEE
T ss_pred             EeEEEE
Confidence            344443

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=1.3e-14  Score=66.75  Aligned_cols=81  Identities=25%  Similarity=0.376  Sum_probs=57.4

Q ss_pred             CCceEEEEeEeCcc---CCCeEEEEeCCE-Eecc--cceEEEEEEec-CCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGF---PRPHITWTKDDI-ELTF--HKYFQVHEWFL-GNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~---~~~~~~w~~~~~-~~~~--~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.   |.|.|.|+++.. .+..  ...+.+..... ........|.|.++...|+|.|.|.+.|..|.
T Consensus        26 eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Cevsn~~g~  105 (118)
T 2edn_A           26 TGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTC  105 (118)
T ss_dssp             TTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEEEECSSCE
T ss_pred             CCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEEEEEEcCCc
Confidence            58899999998764   789999999641 1111  12233322211 22234578999999999999999999999998


Q ss_pred             eeeEEEEe
Q psy11826         75 DRRGFRTD   82 (83)
Q Consensus        75 ~~~~~~~~   82 (83)
                      ..+.+.|.
T Consensus       106 ~s~~~~L~  113 (118)
T 2edn_A          106 DSCGFNID  113 (118)
T ss_dssp             EEEEECCE
T ss_pred             EEEEEEEE
Confidence            87776654

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.60  E-value=8.5e-15  Score=67.41  Aligned_cols=78  Identities=18%  Similarity=0.288  Sum_probs=54.1

Q ss_pred             CCceEEEEeEeCc--cCCCeEEEEeCCEEecc-----cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEG--FPRPHITWTKDDIELTF-----HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~--~~~~~~~w~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+  .|.+.+.|++++..+..     ........  .......+.|.|.+++.+|+|.|.|.+.|..|.
T Consensus        22 ~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~   99 (122)
T 3s35_X           22 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG--SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT   99 (122)
T ss_dssp             ETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEE--TTEEEEEEEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred             cCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccC--CceeeEEEEEEECCCCcccCEEEEEEEccCCCc
Confidence            5889999999988  44568899998764321     11000000  000123467999999999999999999999998


Q ss_pred             eeeEEEE
Q psy11826         75 DRRGFRT   81 (83)
Q Consensus        75 ~~~~~~~   81 (83)
                      ......|
T Consensus       100 ~~~~~~l  106 (122)
T 3s35_X          100 KKNSTFV  106 (122)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            7766554

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.59  E-value=7.6e-14  Score=62.60  Aligned_cols=63  Identities=21%  Similarity=0.386  Sum_probs=49.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccc--eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK--YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      .|+.+.|.|.+.+ +.+.+.|++++..+....  ++.+..  ..   ....|.|.+++.+|.|.|.|.+.|
T Consensus        21 ~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~--~~---~~~~L~I~~~~~~D~G~Y~C~a~n   85 (103)
T 1x44_A           21 CGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRV--EG---KKHILIIEGATKADAAEYSVMTTG   85 (103)
T ss_dssp             TTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEE--ET---TEEEEEEEEECTTTCSEEEEEETT
T ss_pred             CCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEE--cC---CEEEEEECCCCcccCEEEEEEECC
Confidence            5889999999877 778999999999887654  333322  11   135799999999999999999988

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.59  E-value=9.3e-15  Score=78.02  Aligned_cols=72  Identities=25%  Similarity=0.483  Sum_probs=60.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+.......+.         ...|.|..+..+|+|.|.|.+.|..|...+...|
T Consensus       309 ~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~---------~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L  379 (384)
T 3kld_A          309 MEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE---------QGTLNITIVNLSDAGMYQCVAENKHGVIFSSAEL  379 (384)
T ss_dssp             TTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEE---------TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEe---------CCEEEEeecChhhCEEEEEEEEeCCceEEeceEE
Confidence            5888999999999999999999999988765544321         1379999999999999999999999998777665


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       380 ~  380 (384)
T 3kld_A          380 S  380 (384)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.59  E-value=8e-14  Score=72.48  Aligned_cols=81  Identities=16%  Similarity=0.249  Sum_probs=62.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEE-EecC------CCeEEEEEEEccCCCCC-CeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHE-WFLG------NNTIKSKMEIDPATQKD-AGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+.|.|.+.|+++|..+.......... ....      .....+.|.|..++.+| .|.|.|.+.|..|
T Consensus       223 ~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G  302 (315)
T 1itb_B          223 LGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG  302 (315)
T ss_dssp             SSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTC
T ss_pred             CCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCC
Confidence            58899999999999999999999999887643211110 0001      01235689999999999 9999999999999


Q ss_pred             ceeeEEEEe
Q psy11826         74 IDRRGFRTD   82 (83)
Q Consensus        74 ~~~~~~~~~   82 (83)
                      .....+.|.
T Consensus       303 ~~~~~~~l~  311 (315)
T 1itb_B          303 IDAAYIQLI  311 (315)
T ss_dssp             CEEEEEEEE
T ss_pred             ceeEEEEEE
Confidence            988877764

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.58  E-value=4.2e-14  Score=72.79  Aligned_cols=81  Identities=20%  Similarity=0.219  Sum_probs=58.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++......................+.|.|..+..+|.|.|.|.+.|..|.......|
T Consensus       195 ~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l  274 (289)
T 3mjg_X          195 QGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAI  274 (289)
T ss_dssp             TTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEE
T ss_pred             cCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEE
Confidence            58899999999999999999997665433211111111001113345789999999999999999999999988776655


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       275 ~  275 (289)
T 3mjg_X          275 N  275 (289)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.58  E-value=2.7e-14  Score=69.80  Aligned_cols=76  Identities=21%  Similarity=0.306  Sum_probs=61.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+...........  ..   ...|.|..++.+|.|.|.|.+.|..|.....+.|
T Consensus       117 ~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~--~~---~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  191 (194)
T 2a38_A          117 QGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQE--GD---LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL  191 (194)
T ss_dssp             TTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEE--TT---EEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEc--CC---EEEEEECCCChhcCeEEEEEEEeCCCceEEEEEE
Confidence            578899999999999999999999998876554443221  11   3479999999999999999999999988777665


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       192 ~  192 (194)
T 2a38_A          192 L  192 (194)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.58  E-value=6.7e-14  Score=74.00  Aligned_cols=82  Identities=15%  Similarity=0.247  Sum_probs=63.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEe--cCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWF--LGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.+.|.+.|.|.|.+.|++++..+............  .........|.|..++.+|+|.|.|.+.|..|.....+
T Consensus       260 ~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~  339 (347)
T 2ifg_A          260 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI  339 (347)
T ss_dssp             ESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEE
Confidence            3788999999999999999999999888754432221110  11223456899999999999999999999999988877


Q ss_pred             EEeC
Q psy11826         80 RTDY   83 (83)
Q Consensus        80 ~~~~   83 (83)
                      .+.+
T Consensus       340 ~l~V  343 (347)
T 2ifg_A          340 MAAF  343 (347)
T ss_dssp             EECS
T ss_pred             EEEe
Confidence            7653

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.58  E-value=4e-14  Score=72.65  Aligned_cols=76  Identities=22%  Similarity=0.340  Sum_probs=61.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.......+...     .....|.|..+..+|.|.|.|.+.|..|.....+.|
T Consensus       206 ~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  280 (284)
T 2rik_A          206 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE-----NFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSI  280 (284)
T ss_dssp             TTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEc-----CCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEE
Confidence            588899999999999999999999998876654443321     113579999999999999999999999988777665


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       281 ~  281 (284)
T 2rik_A          281 T  281 (284)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.58  E-value=1.5e-14  Score=75.36  Aligned_cols=70  Identities=17%  Similarity=0.234  Sum_probs=56.6

Q ss_pred             CCceEEEEeEeCccCCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.|.|.| .+.|++++..+.......           ..+|.|.+++.+|+|.|.|.+.|..|.....+.
T Consensus       231 ~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~  299 (313)
T 4fqp_A          231 GQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ-----------GAQLLIRPVDKPINTTLICNVTNALGARQAELT  299 (313)
T ss_dssp             TCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEE-----------TTEEEECCCSSCCEEEEEEEEECSSCEEEEEEE
T ss_pred             CCCeEEEEEEecCCCCCcEEEEEECCEECCCceEEe-----------CCEEEECcCChhhCEEEEEEEEeCCCcEEEEEE
Confidence            46789999999999999 599999998776432111           236999999999999999999999998777665


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus       300 l~  301 (313)
T 4fqp_A          300 VQ  301 (313)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.57  E-value=2.5e-14  Score=73.58  Aligned_cols=74  Identities=24%  Similarity=0.495  Sum_probs=60.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.........    ..   ...|.|..+..+|.|.|.|.+.|..|.......+
T Consensus       208 ~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~----~~---~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l  280 (291)
T 2wim_A          208 RGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK----GS---NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL  280 (291)
T ss_dssp             SCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEEC----ST---TCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEc----CC---ccEEEEeeCCcccCEEEEEEEEECCCceeeeEEE
Confidence            5889999999999999999999999988765443321    11   2469999999999999999999999998887766


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       281 ~  281 (291)
T 2wim_A          281 Q  281 (291)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.57  E-value=1.3e-14  Score=70.57  Aligned_cols=74  Identities=23%  Similarity=0.459  Sum_probs=59.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+..........   .    ...|.|..+..+|.|.|.|.+.|..|.....+.|
T Consensus       112 ~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~---~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  184 (189)
T 2v5t_A          112 RGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKG---S----NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL  184 (189)
T ss_dssp             SCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEET---T----TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEec---C----CCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEE
Confidence            58889999999999999999999999887655433211   1    2369999999999999999999999987776655


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       185 ~  185 (189)
T 2v5t_A          185 Q  185 (189)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.57  E-value=1.3e-14  Score=65.43  Aligned_cols=70  Identities=21%  Similarity=0.255  Sum_probs=53.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~   77 (83)
                      .|+.+.|.|.+.+.|.+ +.|++++..+.......+...  .   ....|.|.++..+|.|.|.|.+.|.......
T Consensus        22 ~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~--~---~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~   91 (106)
T 2dlt_A           22 AAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHV--G---RFHKLVIDDVRPEDEGDYTFVPDGYALSLSA   91 (106)
T ss_dssp             SSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEE--T---TEEEEEESSCCTTTCSCEEEEEETSCCCCCB
T ss_pred             CCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEe--C---CEEEEEECCCCcCCCEEEEEEEccCCceEEE
Confidence            58899999999988877 999999988766554443221  1   1357999999999999999999997443333

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=2.7e-15  Score=66.64  Aligned_cols=59  Identities=27%  Similarity=0.522  Sum_probs=49.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+....              ...|.|.+++.+|.|.|.|.+.|..+.
T Consensus        24 ~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~--------------~~~L~i~~v~~~d~G~Y~C~a~n~~~~   82 (96)
T 2ens_A           24 PGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP--------------SPVLILPEIGPQDQGTYSCVATHSSHG   82 (96)
T ss_dssp             TTCEEEEECCCSSCSSCCCCCEESSSBCSSCC--------------CSEEEEESCCTTTCEEEECEECCSSCC
T ss_pred             CCCeEEEEEEEccCCCCEEEEEECCEECcCCC--------------CCEEEECCCCcccCEEEEEEEEeCCCC
Confidence            58999999999999999999999887765432              136899999999999999999996553

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=4.7e-14  Score=63.31  Aligned_cols=67  Identities=22%  Similarity=0.397  Sum_probs=53.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.|.+ +.|++++..+.......+..  ..   ....|.|.+++.+|.|.|.|.+.|..+.
T Consensus        24 ~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~--~~---~~~~L~I~~~~~~D~G~Y~C~a~n~~~~   90 (104)
T 2e6p_A           24 TSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKM--DG---RKHRLILPEAKVQDSGEFECRTEGVSAF   90 (104)
T ss_dssp             SSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEE--ET---TEEEEEESSCCTTTCEEEEEECSSCCCC
T ss_pred             CCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEe--CC---CEEEEEECCCChhhCEEEEEEECCceEE
Confidence            58899999999999988 99999999887654443321  11   1357999999999999999999987553

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.57  E-value=3.2e-13  Score=69.38  Aligned_cols=78  Identities=17%  Similarity=0.220  Sum_probs=61.2

Q ss_pred             CCceEEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+ .|.+.+.|++++..+........   ........+.|.|..++.+|.|.|.|.+.|..|.......
T Consensus       200 ~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~  276 (289)
T 3ejj_X          200 RGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDF---QDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMN  276 (289)
T ss_dssp             SSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEE---CSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEE
T ss_pred             eCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCccc---ccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEE
Confidence            5889999999988 78899999999987765432111   1122233568999999999999999999999999888776


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus       277 L~  278 (289)
T 3ejj_X          277 FQ  278 (289)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.57  E-value=2.5e-14  Score=70.12  Aligned_cols=76  Identities=28%  Similarity=0.398  Sum_probs=60.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEcc-CCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDP-ATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.......+...     .....|.|.. +..+|.|.|.|.+.|..|.....+.
T Consensus       118 ~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~  192 (197)
T 2j8h_A          118 RGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT-----RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVE  192 (197)
T ss_dssp             TTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEEC-----SSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEc-----CCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEE
Confidence            478899999999999999999999988875544333211     1145799999 9999999999999999998877766


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus       193 l~  194 (197)
T 2j8h_A          193 LD  194 (197)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=8.9e-14  Score=62.31  Aligned_cols=63  Identities=24%  Similarity=0.410  Sum_probs=50.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      .|+.+.|.|.+.+ |.+.+.|++++..+.......+...  ..   ...|.|.+++.+|.|.|.|.+.|
T Consensus        22 ~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~--~~---~~~L~I~~v~~~D~G~Y~C~a~n   84 (103)
T 2edf_A           22 PGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCE--GT---MAMLVIRGASLKDAGEYTCEVEA   84 (103)
T ss_dssp             TTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEE--TT---EEEEEESSCCTTTCSEEEEECSS
T ss_pred             CCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEEC--CC---EEEEEECCCCcccCEEEEEEEcc
Confidence            6889999999987 7888999999988766554443321  11   45799999999999999999998

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.56  E-value=5.2e-14  Score=73.07  Aligned_cols=77  Identities=19%  Similarity=0.406  Sum_probs=61.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.......+..    .....+.|.|..++.+|.|.|.|.+.|..|.....+.|
T Consensus       236 ~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l  311 (317)
T 2y25_A          236 EGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKF----EAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV  311 (317)
T ss_dssp             TTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECC----BTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             cCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEE----cCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEE
Confidence            47889999999999999999999998887655433321    11223589999999999999999999999988777665


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       312 ~  312 (317)
T 2y25_A          312 S  312 (317)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.56  E-value=3.7e-15  Score=68.22  Aligned_cols=75  Identities=25%  Similarity=0.348  Sum_probs=50.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccce---EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKY---FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~   77 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+.....   ..... ...+......+.+.+++.+|.|.|.|.+.|..|....
T Consensus        23 ~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G~~~s  100 (117)
T 2v9t_A           23 KGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML-LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVS  100 (117)
T ss_dssp             TTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEE-CTTSCEEESSCCCBTTBCSSCEEEEEEEEETTEEEEC
T ss_pred             CCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEE-ecCCcEEEEEEEeCCCCcCcCEEEEEEEEeCccceEe
Confidence            588999999999999999999999987764321   00000 0111111112223356789999999999999997643

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.55  E-value=9.1e-14  Score=72.02  Aligned_cols=74  Identities=20%  Similarity=0.352  Sum_probs=59.6

Q ss_pred             CCceEEEEeEeCccCCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.|.| .+.|++++..+.......+.       .....|.|.+++.+|.|.|.|.+.|..|.....+.
T Consensus       235 ~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~-------~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~  307 (312)
T 2y23_A          235 GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK-------DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLK  307 (312)
T ss_dssp             TTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC-----------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEE
T ss_pred             CCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEE-------CCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeE
Confidence            58899999999999988 99999999887644332221       11358999999999999999999999999888777


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus       308 l~  309 (312)
T 2y23_A          308 LV  309 (312)
T ss_dssp             EC
T ss_pred             EE
Confidence            64

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.55  E-value=1.5e-13  Score=61.34  Aligned_cols=61  Identities=18%  Similarity=0.309  Sum_probs=48.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      .|+.+.|.|.+. .|.|.+.|++++..+.......+..  ..   ....|.|.++..+|.|.|.|.+
T Consensus        22 ~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~--~~---~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 2yuv_A           22 KGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEH--KG---CQRILFINNCQMTDDSEYYVTA   82 (100)
T ss_dssp             TTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEE--ET---TEEEEEEEEECTTTCCEEEEEE
T ss_pred             CCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEe--cC---CEEEEEEcCCCcCcCEEEEEEE
Confidence            588999999988 7889999999998877655444332  11   1347999999999999999998

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.55  E-value=7.2e-14  Score=74.32  Aligned_cols=66  Identities=24%  Similarity=0.506  Sum_probs=57.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+....               +.|.|..+..+|.|.|.|.+.|..|.....+.|
T Consensus       321 ~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~---------------~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  385 (388)
T 2v5m_A          321 FGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE---------------SVLRIESVKKEDKGMYQCFVRNDRESAEASAEL  385 (388)
T ss_dssp             TTSCEEEEEEEEEECCCEEEEEETTEECSCCS---------------SEEEESSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             CCCCEEEEEEeccccCCeEEEEECCEECccCC---------------CEEEEecCChhhCEEEEEEEEcCCCcEEEEEEE
Confidence            58899999999999999999999998776432               369999999999999999999999998887766


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       386 ~  386 (388)
T 2v5m_A          386 K  386 (388)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.55  E-value=8.4e-14  Score=61.67  Aligned_cols=61  Identities=13%  Similarity=0.311  Sum_probs=48.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      .|+.+.|.|.+ +.|.+.+.|++++..+.....+.+...  .   ....|.|.+++.+|.|.|.|.+
T Consensus        22 ~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~--~---~~~~L~I~~v~~~D~G~Y~C~a   82 (95)
T 2k1m_A           22 AGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATE--G---TRHTLTVREVGPADQGSYAVIA   82 (95)
T ss_dssp             TTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEE--T---TEEEEEESSCCTTCCSEEEEEE
T ss_pred             CCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEc--C---CEEEEEEcCCCcccCEEEEEEE
Confidence            58899999998 788889999999988775544433221  1   1357999999999999999999

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.54  E-value=3.6e-13  Score=60.53  Aligned_cols=75  Identities=12%  Similarity=0.245  Sum_probs=53.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCE-Eecc-------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDI-ELTF-------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++. .+..       ..+......    ......|.|.+++.+|+|.|.|.+.| .+
T Consensus        20 ~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~L~I~~v~~~D~G~Y~C~~~n-~~   94 (108)
T 3m45_A           20 EGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA----SWHELSISVSDVSLSDEGQYTCSLFT-MP   94 (108)
T ss_dssp             TTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEE----SSSEEEEEECSCCGGGCEEEEEEECS-SS
T ss_pred             eCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeec----CCCcEEEEECCCChhHCeEEEEEEEc-CC
Confidence            58899999999999999999998764 2211       112222111    01245799999999999999999999 77


Q ss_pred             ceeeEEEE
Q psy11826         74 IDRRGFRT   81 (83)
Q Consensus        74 ~~~~~~~~   81 (83)
                      .......|
T Consensus        95 ~~~~~~~L  102 (108)
T 3m45_A           95 VKTSKAYL  102 (108)
T ss_dssp             CEEEEEEE
T ss_pred             CcEEEEEE
Confidence            66555444

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.54  E-value=3.2e-13  Score=66.13  Aligned_cols=76  Identities=20%  Similarity=0.322  Sum_probs=57.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+... ........ .   .....|.|.+++.+|.|.|.|.+.|..|.......
T Consensus        18 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-~---~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~   93 (197)
T 2j8h_A           18 YQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEF-K---GGYHQLIIASVTDDDATVYQVRATNQGGSVSGTAS   93 (197)
T ss_dssp             TTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEE-T---TTEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             CCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEc-C---CCEEEEEECcCCHHhCEEEEEEEEECCCceeEEEE
Confidence            5889999999999999999999999887653 22332221 1   11357999999999999999999998877655544


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus        94 l   94 (197)
T 2j8h_A           94 L   94 (197)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.54  E-value=1.6e-13  Score=67.04  Aligned_cols=76  Identities=17%  Similarity=0.307  Sum_probs=60.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCC-CCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ-KDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.+.|.+.+.|.|.+.|++++..+.......+..     ......|.|..+.. +|.|.|.|.+.|..|.....+.
T Consensus       117 ~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~-----~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~  191 (197)
T 3lcy_A          117 VGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIEN-----TEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILD  191 (197)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE-----CSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEE
T ss_pred             CCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEE-----cCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEE
Confidence            47889999999999999999999998887655443322     11135799999985 8999999999999998877766


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus       192 l~  193 (197)
T 3lcy_A          192 VE  193 (197)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.54  E-value=7.6e-13  Score=64.64  Aligned_cols=76  Identities=21%  Similarity=0.423  Sum_probs=57.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEecc---cceEEEEEEecCCCeEEEEEEEccCC-CCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELTF---HKYFQVHEWFLGNNTIKSKMEIDPAT-QKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+.|.|.+.|++  ++..+..   .....+..     ....+.|.|..+. .+|.|.|.|.+.|..|..
T Consensus       106 ~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~-----~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~  180 (190)
T 2wv3_A          106 EGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIIN-----KENYTELNIVNLQITEDPGEYECNATNSIGSA  180 (190)
T ss_dssp             TTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEE-----CSSEEEEEECSCCTTTSCEEEEEEEECSSCEE
T ss_pred             CCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEec-----CCCeeEEEEEeccccCCCEEEEEEEEecCCcc
Confidence            57889999999999999999999  7766542   22222211     1113479999999 799999999999999988


Q ss_pred             eeEEEEe
Q psy11826         76 RRGFRTD   82 (83)
Q Consensus        76 ~~~~~~~   82 (83)
                      ...+.|.
T Consensus       181 ~~~~~l~  187 (190)
T 2wv3_A          181 SVSTVLR  187 (190)
T ss_dssp             EEEEEEE
T ss_pred             eeEEEEE
Confidence            7766553

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=6.7e-13  Score=60.28  Aligned_cols=63  Identities=19%  Similarity=0.348  Sum_probs=49.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      .|+.+.|.|.+. .|.+.+.|++++..+.......+...     .....|.|.++..+|.|.|.|.+.|
T Consensus        27 ~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~n   89 (113)
T 2cpc_A           27 RLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKE-----DTVRRLVLPAVQLEDSGEYLCEIDD   89 (113)
T ss_dssp             TTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEEC-----SSEEEEEESSCCTTTCEEEEEESSS
T ss_pred             cCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEEC-----CCEEEEEECCCCcccCEEEEEEEec
Confidence            588999999985 78889999999988876544333210     1134799999999999999999988

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.53  E-value=4.1e-14  Score=72.78  Aligned_cols=74  Identities=27%  Similarity=0.571  Sum_probs=58.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccc----eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK----YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~   77 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+....    .....    ..   .+.|.|..++.+|.|.|.|.+.|..|....
T Consensus       210 ~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~----~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  282 (291)
T 1qz1_A          210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFS----DD---SSELTIRNVDKNDEAEYVCIAENKAGEQDA  282 (291)
T ss_dssp             SCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEEC----TT---SCEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             cCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEc----CC---CcEEEEEecChhcCEEEEEEEEeCCCceEE
Confidence            58899999999999999999999998876543    11110    11   247999999999999999999999998877


Q ss_pred             EEEEe
Q psy11826         78 GFRTD   82 (83)
Q Consensus        78 ~~~~~   82 (83)
                      .+.|.
T Consensus       283 ~~~l~  287 (291)
T 1qz1_A          283 SIHLK  287 (291)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76654

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.53  E-value=2e-14  Score=67.40  Aligned_cols=72  Identities=26%  Similarity=0.431  Sum_probs=53.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEeccc----------ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFH----------KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+...          ........  ......+.|.|.+++.+|.|.|.|.+.|.
T Consensus        35 ~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  112 (137)
T 3qr2_A           35 VGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHAT--YHQHAASTISIDTLVEEDTGTYECRASND  112 (137)
T ss_dssp             TTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEE--ESSSEEEEEEECSCCGGGCEEEEEEEECC
T ss_pred             CCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecc--cccccceEEEECCCCcccCEEEEEEEEec
Confidence            5889999999999999999999976544321          12222111  11123468999999999999999999999


Q ss_pred             Ccce
Q psy11826         72 FAID   75 (83)
Q Consensus        72 ~g~~   75 (83)
                      .|..
T Consensus       113 ~G~~  116 (137)
T 3qr2_A          113 PDRN  116 (137)
T ss_dssp             TTSS
T ss_pred             CCcc
Confidence            8864

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.53  E-value=4.5e-13  Score=65.46  Aligned_cols=75  Identities=23%  Similarity=0.432  Sum_probs=58.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+..........     .....+|.|..++.+|.|.|.|.+.+..+.......+
T Consensus        21 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-----~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l   95 (197)
T 3lcy_A           21 LGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSS-----DGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL   95 (197)
T ss_dssp             TTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEE-----SSSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             CCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEe-----CCCEEEEEEecCCccCCEEEEEEEECCCCceeEEEEE
Confidence            58899999999999999999999998887655443322     1113579999999999999999999988876554443

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.53  E-value=6.7e-14  Score=74.35  Aligned_cols=72  Identities=25%  Similarity=0.554  Sum_probs=60.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+....+....         ...|.|.++..+|.|.|.|.+.|..|.......|
T Consensus       308 ~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  378 (382)
T 1cs6_A          308 IGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS---------GGELRFSKLVLEDSGMYQCVAENKHGTVYASAEL  378 (382)
T ss_dssp             TTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE---------TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEE---------CCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEE
Confidence            5889999999999999999999999988765443321         1369999999999999999999999988777665


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       379 ~  379 (382)
T 1cs6_A          379 T  379 (382)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.53  E-value=5.2e-13  Score=64.88  Aligned_cols=76  Identities=21%  Similarity=0.354  Sum_probs=56.8

Q ss_pred             CCceEEEEeEeCccC-CCeEEEEe---CCEE-eccc--ceEEEEEEecCCCeEEEEEEEccCC-CCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFP-RPHITWTK---DDIE-LTFH--KYFQVHEWFLGNNTIKSKMEIDPAT-QKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~-~~~~~w~~---~~~~-~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+.| .|.+.|++   ++.. +...  .++.+..  .   ...+.|.|..++ .+|.|.|.|.+.|..|
T Consensus        97 ~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g  171 (184)
T 3b5h_A           97 EGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS--S---QGRSELHIENLNMEADPGQYRCNGTSSKG  171 (184)
T ss_dssp             TTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEE--E---TTEEEEEECSCCTTTSSEEEEEEEEETTE
T ss_pred             CCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEe--c---CCeeEEEEeeccccccCceEEEEEEeCCC
Confidence            588999999999999 79999999   4443 3322  2233221  1   113579999999 8999999999999999


Q ss_pred             ceeeEEEEe
Q psy11826         74 IDRRGFRTD   82 (83)
Q Consensus        74 ~~~~~~~~~   82 (83)
                      .....+.|.
T Consensus       172 ~~~~~~~l~  180 (184)
T 3b5h_A          172 SDQAIITLR  180 (184)
T ss_dssp             EEEEEEEEE
T ss_pred             cceEEEEEE
Confidence            887776654

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.52  E-value=4.7e-13  Score=61.89  Aligned_cols=75  Identities=13%  Similarity=0.299  Sum_probs=53.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEec--------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELT--------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+.|.+.+.|++.+..+.        ...++.+...    .....+|.|.+++.+|+|.|.|.+.|. +
T Consensus        15 ~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~a~n~-g   89 (124)
T 3rbg_A           15 EGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH----SANQLSITVPNVTLQDEGVYKCLHYSD-S   89 (124)
T ss_dssp             TTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEE----ETTEEEEEESSCCGGGCEEEEEEEESS-S
T ss_pred             CCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeC----CCCEEEEEECCCChHHCEEEEEEEEcC-C
Confidence            58999999999999999999997554321        1112222110    011357999999999999999999998 7


Q ss_pred             ceeeEEEE
Q psy11826         74 IDRRGFRT   81 (83)
Q Consensus        74 ~~~~~~~~   81 (83)
                      .......|
T Consensus        90 ~~~~~~~l   97 (124)
T 3rbg_A           90 VSTKEVKV   97 (124)
T ss_dssp             EEEEEEEE
T ss_pred             CCcEEEEE
Confidence            66655544

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.52  E-value=1.1e-12  Score=65.06  Aligned_cols=75  Identities=29%  Similarity=0.502  Sum_probs=56.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecc-cceEEEEEEecCCCeEEEEEEEccCCC-CCCeEEEEEeeCCCcc-eeeE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTF-HKYFQVHEWFLGNNTIKSKMEIDPATQ-KDAGYYECVADNPFAI-DRRG   78 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~-~~~g~y~C~~~~~~g~-~~~~   78 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+.. .........  .  .....|.|..++. .|.|.|.|.+.|..|. ....
T Consensus        20 ~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~--~--~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~   95 (212)
T 2yd1_A           20 VGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQ--P--GGISILRIEPVRAGRDDAPYECVAENGVGDAVSAD   95 (212)
T ss_dssp             TTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEE--T--TTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEE
T ss_pred             cCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEc--C--CCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEee
Confidence            588999999999999999999999988863 333333221  1  1136799999999 9999999999998877 4444


Q ss_pred             EE
Q psy11826         79 FR   80 (83)
Q Consensus        79 ~~   80 (83)
                      ..
T Consensus        96 ~~   97 (212)
T 2yd1_A           96 AT   97 (212)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.52  E-value=7.1e-14  Score=74.59  Aligned_cols=73  Identities=27%  Similarity=0.496  Sum_probs=60.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.......+..        .+.|.|..+..+|.|.|.|.+.|..|.....+.|
T Consensus       326 ~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  397 (403)
T 3laf_A          326 ESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG--------GSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQL  397 (403)
T ss_dssp             TTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEET--------TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             cCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEec--------CccEEEeccccccCEEEEEEEEcCCceEEEEEEE
Confidence            58889999999999999999999998876654433221        2369999999999999999999999998887766


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       398 ~  398 (403)
T 3laf_A          398 I  398 (403)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.51  E-value=5.3e-13  Score=69.07  Aligned_cols=76  Identities=21%  Similarity=0.361  Sum_probs=58.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccc-eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK-YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+.... ...+... ..   ..+.|.|.+++.+|.|.|.|.+.|..|.......
T Consensus        18 ~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~-~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~   93 (305)
T 2nzi_A           18 YQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEF-KG---GYHQLIIASVTDDDATVYQVRATNQGGSVSGTAS   93 (305)
T ss_dssp             TTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEE-TT---TEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             CCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEEC-CC---CEEEEEEccCChhhCeEEEEEEEcCCCCccceEE
Confidence            68999999999999999999999998876432 2322211 11   1357999999999999999999998887655544


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus        94 l   94 (305)
T 2nzi_A           94 L   94 (305)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.51  E-value=2e-13  Score=76.09  Aligned_cols=75  Identities=24%  Similarity=0.378  Sum_probs=60.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+.......+...     ....+|.|.++..+|.|.|.|.+.|..|.......|
T Consensus       398 ~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l  472 (570)
T 3b43_A          398 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSE-----NFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSI  472 (570)
T ss_dssp             TTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEE-----TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEc-----CCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEE
Confidence            588999999999999999999999998876554443221     113479999999999999999999999987765544

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.51  E-value=2.6e-13  Score=76.02  Aligned_cols=76  Identities=24%  Similarity=0.371  Sum_probs=64.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.+.|.+.|.|.|.+.|++++..+....+..+...  +   ...+|.|..+.+.|.|.|+|.+.|..|...+...|
T Consensus       496 ~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~~~~i~~~--~---~~~~L~I~~~~~~D~G~Yt~~A~N~~G~~~~~v~l  570 (573)
T 3uto_A          496 EGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYN--G---NDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL  570 (573)
T ss_dssp             TTSCEEEEEEEECSSCCEEEEEETTEECCSSSSEEEEEE--T---TEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCcEEEEEEEEccCCCeEEEEECCEEcccCCcEEEEEc--C---CEEEEEEcCCCcccCcEEEEEEEeCCCcEEEEEEE
Confidence            588999999999999999999999999987766655431  2   24579999999999999999999999999888776


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       571 ~  571 (573)
T 3uto_A          571 N  571 (573)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.51  E-value=4.8e-13  Score=68.93  Aligned_cols=79  Identities=18%  Similarity=0.230  Sum_probs=58.6

Q ss_pred             CCceEEEEeEeCccCCCe-EEEEeCCEEe----cccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAEGFPRPH-ITWTKDDIEL----TFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~-~~w~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      .|+.+.|.|.+.+.|.|. +.|++++..+    ..........  .......+.|.|.+++.+|.|.|.|.+.|..|...
T Consensus       202 ~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~  279 (290)
T 2o26_X          202 KGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRG--DFNYERQETLTISSARVDDSGVFMCYANNTFGSAN  279 (290)
T ss_dssp             TTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEE--TTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEE
T ss_pred             cCCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccccC--ceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEE
Confidence            588999999999999996 9999988663    2222111110  00122346899999999999999999999999987


Q ss_pred             eEEEEe
Q psy11826         77 RGFRTD   82 (83)
Q Consensus        77 ~~~~~~   82 (83)
                      ....|.
T Consensus       280 ~~~~l~  285 (290)
T 2o26_X          280 VTTTLK  285 (290)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            777664

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.51  E-value=8.5e-13  Score=65.50  Aligned_cols=76  Identities=33%  Similarity=0.534  Sum_probs=57.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccC-CCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPA-TQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....... ......   ....|.|.++ +.+|.|.|.|.+.|..|.....+.
T Consensus        20 ~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~-~~~~~~---~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~   95 (212)
T 2yd6_A           20 SGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEV-IEFDDG---SGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTR   95 (212)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEE-EEEGGG---TEEEEEECSCCTTTTCEEEEEEEEETTEEEEEEEE
T ss_pred             cCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeE-EEEcCC---CceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEE
Confidence            58899999999999999999999998876543221 111111   1457999999 599999999999998887655544


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus        96 l   96 (212)
T 2yd6_A           96 L   96 (212)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.51  E-value=2.9e-13  Score=66.81  Aligned_cols=75  Identities=21%  Similarity=0.425  Sum_probs=55.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|..+.+.|.+.+.|.|.+.|++++..+.......    ........+.|.|..+...|.|.|.|.+.|..|.....+.
T Consensus       132 ~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~~----~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t  206 (218)
T 4frw_A          132 QGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFK----HSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRIT  206 (218)
T ss_dssp             CCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEE----CSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEE
T ss_pred             eccccceeeeccCCcCceEEEEECCcccccCceEe----cCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEE
Confidence            46778999999999999999999886554322111    1122233567999999999999999999999887654443

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.51  E-value=6.9e-14  Score=74.39  Aligned_cols=75  Identities=25%  Similarity=0.445  Sum_probs=57.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CEEeccc-----ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DIELTFH-----KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.|.|.|.+.|+++  +..+...     .+..+..     ....+.|.|.+++.+|.|.|.|.+.|..|.
T Consensus        14 ~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   88 (389)
T 2jll_A           14 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG-----QHGSSSLHIKDVKLSDSGRYDCEAASRIGG   88 (389)
T ss_dssp             TTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEE-----CSSEEEEEEESCCGGGCEEEEEEEECSSCE
T ss_pred             CCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEec-----cCCcceEEEcccChhhCEEEEEEEEeCCCC
Confidence            589999999999999999999998  8776542     2222211     112468999999999999999999999988


Q ss_pred             eeeEEEE
Q psy11826         75 DRRGFRT   81 (83)
Q Consensus        75 ~~~~~~~   81 (83)
                      ....+.|
T Consensus        89 ~~~~~~l   95 (389)
T 2jll_A           89 HQKSMYL   95 (389)
T ss_dssp             EEEEEEE
T ss_pred             cceEEEE
Confidence            7665554

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.50  E-value=2.3e-13  Score=61.32  Aligned_cols=64  Identities=20%  Similarity=0.417  Sum_probs=49.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.+.|.|.+ +.|.+.+.|++++..+... ..+.+..  ...   ...|.|.+++.+|.|.|.|.+.+.
T Consensus        30 ~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~--~~~---~~~L~I~~v~~~D~G~Y~C~a~~~   94 (104)
T 1pd6_A           30 KGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFES--IGA---KRTLTISQCSLADDAAYQCVVGGE   94 (104)
T ss_dssp             TTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEE--ETT---EEEEEECSCSSSSCEEEEEEETTE
T ss_pred             cCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEe--cCC---EEEEEECCCCcccCEEEEEEECCC
Confidence            58899999998 7888899999999888765 4333321  111   347999999999999999999553

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.50  E-value=6e-13  Score=65.17  Aligned_cols=74  Identities=20%  Similarity=0.212  Sum_probs=55.2

Q ss_pred             CCceEEEEeEeC-ccCCCeEEEEeCCEEecccce--EEEEEEecCCCeE--EEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAE-GFPRPHITWTKDDIELTFHKY--FQVHEWFLGNNTI--KSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~-~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+. +.|.+.+.|++++..+.....  ..+..........  .+.|.|.+++.+|.|.|.|.+.+..+..
T Consensus        16 ~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~   94 (195)
T 2c5d_C           16 RGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTF   94 (195)
T ss_dssp             TTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEETTEEE
T ss_pred             cCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeCCCce
Confidence            689999999998 899999999999988876532  2221111111122  4689999999999999999999877653

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.50  E-value=4.5e-14  Score=69.20  Aligned_cols=72  Identities=28%  Similarity=0.427  Sum_probs=57.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.......     ..    ...|.|..+..+|.|.|.|.+.|..|.....+.|
T Consensus       127 ~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~-----~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  197 (201)
T 3s97_C          127 MGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIS-----TS----GAVLKIFNIQLEDEGIYECEAENIRGKDKHQARI  197 (201)
T ss_dssp             TTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEE-----TT----TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             cCCcEEEEEEccCCCCCceEEEeCCCcCCCceeec-----CC----CCEEEEccCChhhCEEEEEEEEecCCceeeeEEE
Confidence            57889999999999999999999998665432211     01    2379999999999999999999999988776655


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       198 ~  198 (201)
T 3s97_C          198 Y  198 (201)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.50  E-value=2.3e-12  Score=64.82  Aligned_cols=81  Identities=22%  Similarity=0.491  Sum_probs=60.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe----CCEEecccce--EEEE-EEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK----DDIELTFHKY--FQVH-EWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~----~~~~~~~~~~--~~~~-~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.|.|.+.|++    ++..+.....  .... ..........+.|.|..+..+|.|.|.|.+.|..|.
T Consensus       128 ~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~  207 (241)
T 3grw_A          128 LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGV  207 (241)
T ss_dssp             TTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             CCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcce
Confidence            58889999999999999999999    7766643321  1111 111222334568999999999999999999999998


Q ss_pred             eeeEEEEe
Q psy11826         75 DRRGFRTD   82 (83)
Q Consensus        75 ~~~~~~~~   82 (83)
                      ....+.|.
T Consensus       208 ~~~~~~l~  215 (241)
T 3grw_A          208 AEKAFWLS  215 (241)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            87776654

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.50  E-value=2.7e-13  Score=67.32  Aligned_cols=70  Identities=30%  Similarity=0.503  Sum_probs=53.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccc---eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK---YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+....   ......  ..   ..+.|.|..++.+|.|.|.|.+.|..|...
T Consensus       122 ~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~--~~---~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~  194 (212)
T 2yd6_A          122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLR--SE---SIGALQIEQSEESDQGKYECVATNSAGTRY  194 (212)
T ss_dssp             TTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEE--ET---TEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEe--cC---CeEEEEEcCCCcccCEEEEEEEECCCCccc
Confidence            47889999999999999999999998876532   221111  01   146799999999999999999999998754

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.50  E-value=8.4e-13  Score=65.75  Aligned_cols=68  Identities=16%  Similarity=0.235  Sum_probs=52.4

Q ss_pred             CCCceEEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          1 MLGRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         1 ~~g~~~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      +.|+.+.|.|.+.+ .|.|.+.|++++..+.......+..   .......+|.|.+++.+|+|.|.|.+.|.
T Consensus        15 ~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~---~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng   83 (207)
T 3rbs_A           15 LEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHI---DRNTGIIEMFMEKLQDEDEGTYTFQLQDG   83 (207)
T ss_dssp             CGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEE---CTTTCEEEEEESCCCGGGCEEEEEEEEET
T ss_pred             EeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEE---eCCCCEEEEEECCCChhhCEEEEEEEECC
Confidence            35788999999864 7999999999999987655443322   11123457999999999999999999883

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.50  E-value=9.2e-14  Score=68.94  Aligned_cols=67  Identities=27%  Similarity=0.656  Sum_probs=54.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~   77 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+... ......         ...|.|..++.+|.|.|.|.+.|..|....
T Consensus       124 ~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s  191 (212)
T 2yd1_A          124 VGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK---------DGFLQIENSREEDQGKYECVAENSMGTEHS  191 (212)
T ss_dssp             TTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEE---------TTEEEECSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             cCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEcc---------CCeEEEccCChhhCEEEEEEeecCCCceeE
Confidence            4888999999999999999999999887653 222111         127999999999999999999999998753

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.49  E-value=2.2e-13  Score=72.54  Aligned_cols=71  Identities=25%  Similarity=0.446  Sum_probs=59.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+... +....         ...|.|.++..+|.|.|.|.+.|..|.....+.|
T Consensus       323 ~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~---------~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l  392 (395)
T 1bih_A          323 QGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT---------DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV  392 (395)
T ss_dssp             TTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE---------TTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEE---------CCEEEEeeCCcccCEEEEEEEEccCCCceEEEEE
Confidence            5889999999999999999999999887654 22221         1279999999999999999999999998877766


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       393 ~  393 (395)
T 1bih_A          393 Q  393 (395)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.7e-14  Score=63.86  Aligned_cols=63  Identities=16%  Similarity=0.364  Sum_probs=49.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccc----eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK----YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      .|+.+.|.|.+.+.| +.+.|++++..+....    ++.+..  .   .....|.|.++..+|.|.|.|.+.|
T Consensus        22 ~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~--~---~~~~~L~I~~~~~~D~G~Y~C~a~n   88 (101)
T 2edk_A           22 VGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKK--D---GKRHILIFSDVVQEDRGRYQVITNG   88 (101)
T ss_dssp             SSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEE--C---SSEEEEECSSCCGGGCSBEEEECSS
T ss_pred             CCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEE--C---CCEEEEEECCCChhhCEEEEEEEcC
Confidence            588899999998888 8999999998776544    223221  1   1245799999999999999999987

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.49  E-value=2.4e-13  Score=66.41  Aligned_cols=74  Identities=23%  Similarity=0.336  Sum_probs=56.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccc--eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK--YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....  ......  .   .....|.|.+++.+|.|.|.|.+.+..+......
T Consensus        19 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~---~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~   93 (194)
T 2a38_A           19 EGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISF--S---DGRAKLTIPAVTKANSGRYSLKATNGSGQATSTA   93 (194)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEE--E---TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEe--C---CCEEEEEECCCCcccCEEEEEEEEcCCceEeEEE
Confidence            58899999999999999999999988776432  222211  0   1135799999999999999999998887665544


Q ss_pred             E
Q psy11826         80 R   80 (83)
Q Consensus        80 ~   80 (83)
                      .
T Consensus        94 ~   94 (194)
T 2a38_A           94 E   94 (194)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.49  E-value=8.6e-13  Score=59.97  Aligned_cols=60  Identities=20%  Similarity=0.365  Sum_probs=47.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      .|+.+.|.|.+.+.  |.+.|++++..+....+..+...  .   ....|.|.++..+|.|.|.|.+
T Consensus        33 ~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~--~---~~~~L~I~~v~~~D~G~Y~C~a   92 (113)
T 2edh_A           33 EGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQD--G---ARCELQIRGLVAEDAGEYLCMC   92 (113)
T ss_dssp             TTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEE--T---TEEEEEECSCCSTTCEEEEEEE
T ss_pred             CCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEEC--C---CEEEEEECCCChhhCEEEEEEe
Confidence            58899999998765  68999999988876555444321  1   1357999999999999999999

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.48  E-value=8.4e-13  Score=65.69  Aligned_cols=80  Identities=19%  Similarity=0.279  Sum_probs=55.9

Q ss_pred             CCceEEEEeEeCccCC--CeEEEEeCCEEecccce-EEEEEEecCC---CeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFPR--PHITWTKDDIELTFHKY-FQVHEWFLGN---NTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+.|.  +.+.|++++..+..... ... ......   ....+.|.|.+++.+|+|.|.|.+.|..|..
T Consensus       119 ~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~  197 (213)
T 2x1w_L          119 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD-LKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK  197 (213)
T ss_dssp             TTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEE-ECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred             CCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccc-cccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcE
Confidence            5899999999988553  57999998875433211 000 000000   2335689999999999999999999999987


Q ss_pred             eeEEEEe
Q psy11826         76 RRGFRTD   82 (83)
Q Consensus        76 ~~~~~~~   82 (83)
                      .....|.
T Consensus       198 ~~~~~l~  204 (213)
T 2x1w_L          198 KNSTFVR  204 (213)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7666553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.48  E-value=1e-13  Score=75.79  Aligned_cols=76  Identities=26%  Similarity=0.365  Sum_probs=55.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.+.|.+.|.|.|.+.|++++..+..........  ...   ..+|.|..++.+|+|.|.|.+.|..|.......+
T Consensus       399 ~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~--~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l  473 (477)
T 2id5_A          399 EGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLT--VFP---DGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL  473 (477)
T ss_dssp             TTCCEEECCCEEEESCCEEEEECTTSCBC-------CE--ECT---TSCEEESSCCSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCeEEEEEeccccCCCEEEEEECCccccccCCCceEE--eCC---CCEEEEeeCChHHCEEEEEEEEeCCCcEEEEEEE
Confidence            58899999999999999999999887654321111001  011   1259999999999999999999999988776655


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       474 ~  474 (477)
T 2id5_A          474 H  474 (477)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.48  E-value=8.9e-13  Score=71.55  Aligned_cols=75  Identities=17%  Similarity=0.103  Sum_probs=55.5

Q ss_pred             CCCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .+|+.+.|.|.+.+.|.|.+.|++++..+.......      .......+|.|.+++.+|+|.|.|.+.|..|.....+.
T Consensus        61 ~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~------~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~  134 (423)
T 3qs7_E           61 DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFD------LQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFT  134 (423)
T ss_dssp             CSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEE
T ss_pred             ecCCcEEEEEEEEcCCCCeEEEEECCCccCccceec------cccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEE
Confidence            368999999999999999999999987765432211      11112346999999999999999999999988766655


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus       135 l  135 (423)
T 3qs7_E          135 V  135 (423)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.48  E-value=7.7e-13  Score=67.90  Aligned_cols=75  Identities=28%  Similarity=0.394  Sum_probs=58.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+...........  .   ....|.|.+++.+|.|.|.|.+.|..|.......|
T Consensus        19 ~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~--~---~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~l   93 (284)
T 2rik_A           19 LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLV--E---NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL   93 (284)
T ss_dssp             TTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEE--T---TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEc--C---CEEEEEEecCCcccCEEEEEEEEECCceEEEEEEE
Confidence            588999999999999999999999988876544333211  1   13579999999999999999999988876554443

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.48  E-value=8.3e-13  Score=73.61  Aligned_cols=76  Identities=17%  Similarity=0.259  Sum_probs=60.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecc-cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTF-HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+.. .....+.     .......|.|..++.+|+|.|.|.+.|..|.......
T Consensus       491 ~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~-----~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~  565 (570)
T 3b43_A          491 VGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWIS-----YSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFAT  565 (570)
T ss_dssp             TTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEEC-----CCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEE
T ss_pred             CCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEE-----ECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEE
Confidence            588899999999999999999999865543 3332221     1112468999999999999999999999999988877


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus       566 L~  567 (570)
T 3b43_A          566 LS  567 (570)
T ss_dssp             EC
T ss_pred             EE
Confidence            75

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.48  E-value=3.5e-13  Score=66.49  Aligned_cols=73  Identities=25%  Similarity=0.548  Sum_probs=56.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee-EEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR-GFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~-~~~   80 (83)
                      .|+.+.|.|.+.+.| |.+.|++++..+..........   .    ...|.|..+..+|.|.|.|.+.|..|.... .+.
T Consensus       124 ~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~---~----~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~  195 (208)
T 3r4d_A          124 ELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQ---N----NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIK  195 (208)
T ss_dssp             TTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEET---T----TTEEEESSCCGGGCEEEEEEEECTTCCEECCCEE
T ss_pred             eCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcC---C----CCEEEEeccCHHhCeEEEEEEecCCCcccCCcee
Confidence            588999999998866 7999999998887654433221   1    146999999999999999999999987644 444


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus       196 l~  197 (208)
T 3r4d_A          196 LD  197 (208)
T ss_dssp             EC
T ss_pred             ee
Confidence            43

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.48  E-value=2e-13  Score=71.36  Aligned_cols=70  Identities=21%  Similarity=0.302  Sum_probs=57.7

Q ss_pred             CCceEEEEeEeCccCCCe-EEEEeCCEEecccceEEEEEEecCCCeEEEEEEEc-cCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEID-PATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.|.|.+.+.|.|. +.|++++..+.......           ...|.|. .+..+|.|.|.|.+.|..|.....+
T Consensus       246 ~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~-----------~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~  314 (331)
T 3u83_A          246 QRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQ-----------NRTLFFKGPINYSLAGTYICEATNPIGTRSGQV  314 (331)
T ss_dssp             TCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEE-----------TTEEEECSCCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCCeEEEEEeCcCCCCCCEEEEEECCCcccccceec-----------CcEEEEeCCCccccCeEEEEEEEeccccceEEE
Confidence            588999999999999998 99999988776542111           2368999 8999999999999999999887777


Q ss_pred             EEe
Q psy11826         80 RTD   82 (83)
Q Consensus        80 ~~~   82 (83)
                      .|.
T Consensus       315 ~l~  317 (331)
T 3u83_A          315 EVN  317 (331)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            664

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.48  E-value=4e-13  Score=71.69  Aligned_cols=75  Identities=16%  Similarity=0.232  Sum_probs=58.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+...........      ....|.|..+..+|.|.|.|.+.|..|.....+.|
T Consensus       326 ~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  399 (404)
T 3p3y_A          326 PGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREV------AGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFV  399 (404)
T ss_dssp             TTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEE------ETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEE
T ss_pred             cCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEe------cCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEE
Confidence            588999999999999999999999998865431100000      02379999999999999999999999988777665


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       400 ~  400 (404)
T 3p3y_A          400 S  400 (404)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=9.7e-14  Score=62.52  Aligned_cols=65  Identities=20%  Similarity=0.218  Sum_probs=50.2

Q ss_pred             CCceEEEEeEeCccCCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.+.|.|.+.+.|.+ .+.|++++..+....++.+...  .   ...+|.|.++..+|+|.|.|.+.+.
T Consensus        22 ~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~--~---~~~~L~I~~v~~~D~G~Y~C~a~~~   87 (104)
T 2eny_A           22 EGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQ--G---RKYILVVREAAPSDAGEVVFSVRGL   87 (104)
T ss_dssp             SSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEE--T---TEEEEEECSCCTTTCSCEEEEETTE
T ss_pred             CCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEc--C---CEEEEEECCCCHHHCEEEEEEECCe
Confidence            58899999999887754 7999999988876554443221  1   1357999999999999999988664

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.47  E-value=4.2e-12  Score=72.95  Aligned_cols=80  Identities=24%  Similarity=0.526  Sum_probs=63.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+...................+.|.|..+..+|.|.|.|.+.|..|.......|
T Consensus       443 ~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  522 (816)
T 3dmk_A          443 PGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL  522 (816)
T ss_dssp             SSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEE
Confidence            58889999999999999999999999887655544433323334445679999999999999999999998877665544

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.47  E-value=3.8e-13  Score=65.47  Aligned_cols=65  Identities=9%  Similarity=0.074  Sum_probs=53.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+...               ...|.|..++.+|.|.|.|.+.|..+.....+.|
T Consensus       111 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l  175 (184)
T 2ny1_B          111 QGQSLTLTLESPPGSSPSVQCRSPRGKNIQG---------------GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI  175 (184)
T ss_dssp             TTCCEEEEEECCTTCCCEEEEECTTSCEEEE---------------SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             cCCCEEEEEEcCCCCCCEEEEEeCCCccccC---------------ceEEEEecCCcCCCeEEEEEEEECCceEEEEEEE
Confidence            5889999999988999999999987544111               2479999999999999999999988877666554

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.46  E-value=1.3e-13  Score=67.52  Aligned_cols=59  Identities=15%  Similarity=0.264  Sum_probs=49.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+   |.|.+.|++++..+.....            ....|.|..+..+|.|.|.|.+.|..|..
T Consensus       121 ~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~------------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          121 GDGSVLLTCGL---TDKTIKWLKDGSIISPLNA------------TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             SSCEEEEECSS---SCSCEEEEETTEECCCSSC------------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             CCCeEEEEeeC---CCCeEEEEECCEECcccCC------------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            68899999997   8899999999998764321            12368889999999999999999998866

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.46  E-value=2.6e-12  Score=62.29  Aligned_cols=70  Identities=20%  Similarity=0.399  Sum_probs=55.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+..........   ........|.|.+++.+|.|.|.|.+.+..+.
T Consensus        16 ~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~   85 (182)
T 1rhf_A           16 QGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPV---SEQHWIGFLSLKSVERSDAGRYWCQVEDGGET   85 (182)
T ss_dssp             TTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEE---ETTEEEEEEEESSCCGGGCEEEEEEESSCTTC
T ss_pred             CCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEe---cCCCceEEEEEeecCcccCeEEEEEEEcCCCc
Confidence            58899999999999999999999998887654332221   12333568999999999999999999987664

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.46  E-value=4.9e-13  Score=73.65  Aligned_cols=81  Identities=16%  Similarity=0.165  Sum_probs=60.6

Q ss_pred             CCceEEEEeEeCccCCCe-EEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.|.|. +.|++++..+...................+.|.|.+++.+|.|.|.|.+.|..|.....+.
T Consensus       327 ~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  406 (524)
T 2ec8_A          327 DGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFN  406 (524)
T ss_dssp             TTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             CCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEE
Confidence            588999999999999999 9999999877654321111000111224578999999999999999999999998766665


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus       407 l~  408 (524)
T 2ec8_A          407 VY  408 (524)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.46  E-value=4e-13  Score=60.15  Aligned_cols=63  Identities=16%  Similarity=0.372  Sum_probs=48.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      .|+.+.|.|.+.+.|.+ +.|++++..+.......+..     ......|.|.+++.+|+|.|.|.+.+
T Consensus        22 ~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~~g~   84 (103)
T 2e7b_A           22 EGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ-----EGAMLELVVRNLRPQDSGRYSCSFGD   84 (103)
T ss_dssp             SSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEE-----CSSEEEEEECSCCTTTCCCEEEECSS
T ss_pred             CCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEE-----cCCEEEEEEccCCcccCEEEEEEECC
Confidence            58899999999999988 99999988776544444322     11245799999999999999998433

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.46  E-value=4.6e-13  Score=66.79  Aligned_cols=59  Identities=25%  Similarity=0.436  Sum_probs=51.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.....              ..|.|..++.+|.|.|.|.+.|..|.
T Consensus       132 ~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~--------------~~L~i~~v~~~d~G~Y~C~a~n~~g~  190 (218)
T 3k0w_A          132 PGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK--------------KLYMVPYVDLEHQGTYWCHVYNDRDS  190 (218)
T ss_dssp             TTCCEEEECEEEBSSCCEEEEEETTEECTTCCS--------------SEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred             CCCcEEEEEEecccCCCeEEEEECCEECCCCCC--------------CEEEEeecChhcCEEEEEEEEcCCCC
Confidence            578899999999999999999999987765431              36899999999999999999998876

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=6.8e-13  Score=59.31  Aligned_cols=64  Identities=27%  Similarity=0.465  Sum_probs=50.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.+.|.|.+. .|.+.+.|++++..+.......+...  .   ....|.|.+++.+|.|.|.|.+.+.
T Consensus        25 ~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~--~---~~~~L~I~~~~~~D~G~Y~C~a~~~   88 (102)
T 2eo1_A           25 AGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAV--G---CTRRLVVQQAGQAEAGEYSCEAGGQ   88 (102)
T ss_dssp             TTCCEEECCBCS-CSSSCCEEEETTEECCCCSSEEEEEE--T---TEEEEEETTCCTTTCSCEEEEETTE
T ss_pred             CCCcEEEEEEec-CCCCceEEEECCEECCCCCCEEEEEc--C---CEEEEEECCCCcccCEEEEEEcCCC
Confidence            588999999987 88899999999998876554433221  1   1357999999999999999998654

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=9.5e-13  Score=58.92  Aligned_cols=60  Identities=23%  Similarity=0.423  Sum_probs=47.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.+.|.|. .+.|.+.+.|++++..+....++.+..  ..   ....|.|.+++.+|.|.|.|.
T Consensus        22 ~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~~~~~~~~--~~---~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2dku_A           22 EKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQ--EG---LTLRLTISALEKADSDTYTCD   81 (103)
T ss_dssp             TTSEEEEEEE-CSSCCSCCEEEESSCBCCSSSSEEEEE--ET---TEEEEEEESCCTTTCSEEEEE
T ss_pred             CCCcEEEEEE-eCCCCCeEEEEeCCEECCCCCeEEEEe--CC---CEEEEEECCCCcccCEEEEEE
Confidence            5889999999 588899999999998877655444321  11   134799999999999999998

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.46  E-value=8.4e-14  Score=69.15  Aligned_cols=77  Identities=22%  Similarity=0.352  Sum_probs=54.2

Q ss_pred             CCceEEEEeEe-CccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeE
Q psy11826          2 LGRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG   78 (83)
Q Consensus         2 ~g~~~~~~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~   78 (83)
                      .|+.+.|.|.+ .+.|.|.+.|++++..+.....................|.|..++.+|.|.|.|.+.|..|.....
T Consensus       122 ~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~  199 (217)
T 2vr9_A          122 KGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESS  199 (217)
T ss_dssp             TTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECC
T ss_pred             CCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccc
Confidence            58889999998 899999999999998877422111000000000001369999999999999999999999876543

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.45  E-value=8.9e-13  Score=68.38  Aligned_cols=70  Identities=23%  Similarity=0.429  Sum_probs=54.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.......         .....|.+..+  +|+|.|.|.+.|..|.......|
T Consensus       219 ~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~---------~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l  287 (304)
T 2yd9_A          219 PGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMP---------VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQI  287 (304)
T ss_dssp             TTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCC---------BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCeEEEEEEEeeeCCCEEEEEECCEECCCccccc---------CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEE
Confidence            58899999999999999999999998876543211         11235666655  68999999999999988777766


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       288 ~  288 (304)
T 2yd9_A          288 T  288 (304)
T ss_dssp             C
T ss_pred             E
Confidence            4

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=3.5e-14  Score=64.90  Aligned_cols=64  Identities=17%  Similarity=0.189  Sum_probs=48.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.......+..    .......|.|.++..+|+|.|.|.+.
T Consensus        27 ~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~~g   90 (115)
T 2cr6_A           27 EGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDA----QPGGYHVLTLRQLALKDSGTIYFEAG   90 (115)
T ss_dssp             TTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCC----BTTTBCCBEECSCCTTTCEEEEEEET
T ss_pred             CCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEE----cCCCEEEEEEcCCChhhCEEEEEEEC
Confidence            58899999999999999999999998876544322210    01113469999999999999999843

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.45  E-value=1.2e-13  Score=67.35  Aligned_cols=66  Identities=32%  Similarity=0.589  Sum_probs=54.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.+.|.+.+.|.+.+.|++++..+..........        ...|.|..+..+|.|.|.|.+.|..|..
T Consensus       114 ~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~--------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  179 (192)
T 2iep_A          114 EGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLE--------SGSLRIHNVQKEDAGQYRCVAKNSLGTA  179 (192)
T ss_dssp             TTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECT--------TSCEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEec--------CCcEEEecCChhhCEEEEEEEEcCCCcE
Confidence            57889999999999999999999998877654332211        1269999999999999999999998876

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.45  E-value=2e-12  Score=67.88  Aligned_cols=80  Identities=13%  Similarity=0.126  Sum_probs=58.8

Q ss_pred             CCceEEEEeEeCccC---CC-eEEEEeCCEEe-cccceEEEEEEecCCCeEEEEEEEccCCCCCCe-EEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFP---RP-HITWTKDDIEL-TFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG-YYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~---~~-~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+.|   .| .+.|++++..+ ........... .......+.|.|.+++.+|.| .|.|.+.|..|..
T Consensus       242 ~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~  320 (329)
T 3oq3_B          242 IGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILT-SSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDK  320 (329)
T ss_dssp             TTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEE-EETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEE
T ss_pred             cCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeec-ccCceeEeEEEEEeccHHHCCCcEEEEEEecCCce
Confidence            588999999999987   77 88999998774 32222111111 111234678999999999999 9999999999988


Q ss_pred             eeEEEEe
Q psy11826         76 RRGFRTD   82 (83)
Q Consensus        76 ~~~~~~~   82 (83)
                      .....|.
T Consensus       321 ~~~~~l~  327 (329)
T 3oq3_B          321 TLTTTVV  327 (329)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            7766553

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.45  E-value=3.6e-13  Score=66.50  Aligned_cols=67  Identities=28%  Similarity=0.521  Sum_probs=53.9

Q ss_pred             CCceEEEEeEe-CccCCCeEEEEeCCEEecccce-EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826          2 LGRKITFFCMA-EGFPRPHITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         2 ~g~~~~~~C~~-~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~   77 (83)
                      .|+.+.+.|.+ .+.|.|.+.|++++..+..... ....         ...|.|..++.+|.|.|.|.+.|..|....
T Consensus       125 ~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~---------~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s  193 (212)
T 2v9r_A          125 VGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIR---------GGKLMITYTRKSDAGKYVCVGTNMVGERES  193 (212)
T ss_dssp             TTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEE---------TTEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEcc---------CCeEEEeeCCHhhCeeEEEEEecccCceec
Confidence            57889999998 8899999999999988875432 2111         136999999999999999999999887543

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.44  E-value=2.3e-13  Score=67.90  Aligned_cols=76  Identities=20%  Similarity=0.376  Sum_probs=56.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+.............    ....|.|.+++.+|.|.|.|.+.+..+.......+
T Consensus        33 ~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l  108 (231)
T 3ojm_B           33 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN----QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL  108 (231)
T ss_dssp             TTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEG----GGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             cCCCEEEEEecccCCCCeEEEEECCccccccccccceeeec----CcceEEEecCCcccCEEEEEEEecccCcccccEEE
Confidence            58999999999999999999999998876543211000000    02369999999999999999999988776554443

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.44  E-value=8e-12  Score=59.07  Aligned_cols=75  Identities=12%  Similarity=0.208  Sum_probs=51.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCE--------EecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDI--------ELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+.+.+.+.|++.+.        ......++.....    .....+|.|.+++.+|+|.|.|.+.|. +
T Consensus        52 ~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~----~~~~~~L~I~~v~~~DsG~Y~C~~~n~-~  126 (145)
T 1z9m_A           52 AGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTS----TPHELSISISNVALADEGEYTCSIFTM-P  126 (145)
T ss_dssp             TTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEE----CSSEEEEEECSCCGGGCEEEEEEECSS-S
T ss_pred             cCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecC----CCCeEEEEECCCChhhCEEEEEEEEcC-C
Confidence            58999999999998888999994221        1111122222111    111357999999999999999999998 7


Q ss_pred             ceeeEEEE
Q psy11826         74 IDRRGFRT   81 (83)
Q Consensus        74 ~~~~~~~~   81 (83)
                      .......|
T Consensus       127 ~~~~~~~L  134 (145)
T 1z9m_A          127 VRTAKSLV  134 (145)
T ss_dssp             CEEEEEEE
T ss_pred             CceEEEEE
Confidence            66555444

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.44  E-value=5.9e-12  Score=62.62  Aligned_cols=78  Identities=13%  Similarity=0.172  Sum_probs=50.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC-CEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD-DIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.+.|.+.|.|.|.+.|+++ +..+...................+.+   .+...|.|.|.|.+.|..|.......
T Consensus       130 ~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l---~v~~~d~g~Y~C~a~n~~g~~~~~~~  206 (222)
T 3sbw_C          130 VTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTL---RINTTTNEIFYCTFRRLDPEENHTAE  206 (222)
T ss_dssp             TTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEE---EEECCTTCEEEEEEEETTTTEEEEEE
T ss_pred             CCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEE---EEeccCCcEEEEEEEeCccceeeEEE
Confidence            578899999999999999999998 55554332211111101111112233   34568899999999999998777665


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus       207 l~  208 (222)
T 3sbw_C          207 LV  208 (222)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.44  E-value=1.8e-12  Score=67.27  Aligned_cols=73  Identities=21%  Similarity=0.362  Sum_probs=56.4

Q ss_pred             CCceEEEEeEeCcc-CCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGF-PRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+. |.+.+.|++++..+.........       .....|.|.+++.+|.|.|.|.+.|..|.....+.
T Consensus        20 ~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~-------~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~   92 (317)
T 2y25_A           20 GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK-------DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLK   92 (317)
T ss_dssp             TTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC------------CCEEEEETTCCSTTCSCEEEEEESSSCEEEEEEC
T ss_pred             CCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEE-------CCeEEEEEccCCcccCeEEEEEEECCCCcEEEEEE
Confidence            58999999998877 77899999999888754433221       11358999999999999999999998887665554


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus        93 l   93 (317)
T 2y25_A           93 L   93 (317)
T ss_dssp             C
T ss_pred             E
Confidence            3

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.44  E-value=2.5e-12  Score=66.70  Aligned_cols=76  Identities=28%  Similarity=0.570  Sum_probs=50.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCC-CCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ-KDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.... ......   .......|.|.++.. +|.|.|.|.+.|..|.......
T Consensus        20 ~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~-~~~~~~---~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~~~~~   95 (304)
T 2yd9_A           20 SGGVASFVCQATGDPKPRVTWNKKGKKVNSQR-FETIEF---DESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAK   95 (304)
T ss_dssp             TTSCEEEEEEEECSSCCEEEEC-------CTT-EEEEEE---TTTTEEEEEECSCCTTTTCSEEEEEEECSSCEECCEEE
T ss_pred             CCCeEEEEEEEEEeCCCeEEEEECCEECCCCc-eEEEEe---cCCCceEEEEecccccCCCeEEEEEEECCCCeEEEEEE
Confidence            58899999999999999999999988775432 222211   111135799999998 9999999999998887544443


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus        96 l   96 (304)
T 2yd9_A           96 L   96 (304)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.44  E-value=7.3e-13  Score=70.58  Aligned_cols=71  Identities=17%  Similarity=0.274  Sum_probs=54.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccc----eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK----YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~   77 (83)
                      .|+.+.+.|.+.| |.|.+.|++++..+....    +... .        ..+|.|.+++.+|+|.|+|.+.|..|....
T Consensus       260 ~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~--------~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~  329 (361)
T 2xot_A          260 LGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-R--------NGDLFFKKVQVEDGGVYTCYAMGETFNETL  329 (361)
T ss_dssp             TTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-E--------TTEEEESSCCTTSCEEEEEEEECSSCEEEE
T ss_pred             CCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-e--------cCeEEEeecCcccCEEEEEEEecCCCccEE
Confidence            5889999999988 999999999765443211    2222 1        236999999999999999999999988777


Q ss_pred             EEEEe
Q psy11826         78 GFRTD   82 (83)
Q Consensus        78 ~~~~~   82 (83)
                      .+.+.
T Consensus       330 ~~~l~  334 (361)
T 2xot_A          330 SVELK  334 (361)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66553

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.43  E-value=4.3e-13  Score=67.45  Aligned_cols=76  Identities=24%  Similarity=0.437  Sum_probs=56.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+..............    ...|.|.+++.+|.|.|.|.+.+..+.......+
T Consensus        29 ~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l  104 (241)
T 3grw_A           29 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ----QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL  104 (241)
T ss_dssp             TTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGG----GTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeecc----ceEEEEEeCCcccCEEEEEEEeecCCceEEEEEE
Confidence            589999999999999999999999988765432110000001    2369999999999999999999988776554443

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=5.3e-12  Score=57.64  Aligned_cols=62  Identities=13%  Similarity=0.199  Sum_probs=47.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccc----------eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK----------YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      .|+.+.|.|.+.+  .|.+.|+++|..+....          +..+.     ......+|.|.++..+|+|.|.|...+
T Consensus        22 eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~-----~~g~~~~L~I~~v~~~D~G~Y~~~~~~   93 (112)
T 2e6q_A           22 DGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIE-----QKGLQHRLILHAVKHQDSGALVGFSCP   93 (112)
T ss_dssp             TTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEEC-----CBTTEEEEEEESCCSTTCSEEEEEEET
T ss_pred             CCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEE-----eCCcEEEEEECCCCHHHCccEEEEEEC
Confidence            5899999999987  77899999999887664          43331     112245899999999999999775444

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.43  E-value=2.7e-13  Score=68.45  Aligned_cols=81  Identities=19%  Similarity=0.131  Sum_probs=54.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceE--EEEEEe----------c-CCCe---EEEEEEEccCCCCCCeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYF--QVHEWF----------L-GNNT---IKSKMEIDPATQKDAGYYE   65 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~----------~-~~~~---~~~~l~i~~~~~~~~g~y~   65 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+......  ......          . ....   ....|.|..++.+|.|.|.
T Consensus       150 ~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~  229 (250)
T 2fbo_J          150 EGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVW  229 (250)
T ss_dssp             TTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEE
T ss_pred             CCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEE
Confidence            4889999999999999999999988766542211  000000          0 0000   1147999999999999999


Q ss_pred             EEeeCCC---cceeeEEEEe
Q psy11826         66 CVADNPF---AIDRRGFRTD   82 (83)
Q Consensus        66 C~~~~~~---g~~~~~~~~~   82 (83)
                      |.+.|..   |.....+.|.
T Consensus       230 C~a~N~~g~~g~~~~~~~l~  249 (250)
T 2fbo_J          230 CELATGQGELDADRSSTILK  249 (250)
T ss_dssp             EEEESSSSGGGEEEEEEEEE
T ss_pred             EEecCCccccCccceeEEEe
Confidence            9999954   4555555443

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.43  E-value=8.2e-13  Score=64.42  Aligned_cols=66  Identities=20%  Similarity=0.352  Sum_probs=52.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccc--eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK--YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+....  .....    .    ...|.|..++.+|.|.|.|.+.|..+..
T Consensus       114 ~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~----~----~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  181 (191)
T 1epf_A          114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL----S----NNYLQIRGIKKTDEGTYRCEGRILARGE  181 (191)
T ss_dssp             TTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC----T----TSCEEETTCCGGGCEEEEEEEEEGGGTE
T ss_pred             CCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEe----c----CCeEEECCCChhhCEEEEEEEEEeccee
Confidence            58889999999999999999999998876432  22111    1    1269999999999999999999988644

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.43  E-value=2.6e-12  Score=68.36  Aligned_cols=75  Identities=24%  Similarity=0.438  Sum_probs=58.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccc--eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK--YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....  ...+..  .   ...+.|.|..+...|.|.|.|.+.|..|......
T Consensus       114 ~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~--~---~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~  188 (389)
T 2jll_A          114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYS--T---GRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEY  188 (389)
T ss_dssp             TTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEE--C---SSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEE
T ss_pred             cCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEec--c---CCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEE
Confidence            58889999999999999999999998887543  222211  1   1135799999999999999999999998866554


Q ss_pred             EE
Q psy11826         80 RT   81 (83)
Q Consensus        80 ~~   81 (83)
                      .+
T Consensus       189 ~l  190 (389)
T 2jll_A          189 IL  190 (389)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.42  E-value=1.3e-12  Score=65.15  Aligned_cols=80  Identities=21%  Similarity=0.320  Sum_probs=57.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe----CCEEecccce--EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK----DDIELTFHKY--FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+.|.|.+.|++    ++..+.....  ..............+.|.|..+..+|.|.|.|.+.|..|..
T Consensus       132 ~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  211 (231)
T 3ojm_B          132 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA  211 (231)
T ss_dssp             TTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             eCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceE
Confidence            47889999999999999999998    7766543321  11111111111223469999999999999999999999987


Q ss_pred             eeEEEE
Q psy11826         76 RRGFRT   81 (83)
Q Consensus        76 ~~~~~~   81 (83)
                      ...+.|
T Consensus       212 ~~~~~l  217 (231)
T 3ojm_B          212 NQSAWL  217 (231)
T ss_dssp             EEEEEE
T ss_pred             eeEEEE
Confidence            666655

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.42  E-value=1.6e-12  Score=63.45  Aligned_cols=68  Identities=21%  Similarity=0.281  Sum_probs=53.6

Q ss_pred             CceEEEEeEeCccCC--CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          3 GRKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         3 g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      |+.+.|.|.+.+.|.  +.+.|++++..+.......          ....|.|.+++.+|.|.|.|.+.+. +.....+.
T Consensus        18 G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~----------~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~~~   86 (190)
T 2wv3_A           18 LLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA----------SNMEYRINKPRAEDSGEYHCVYHFV-SAPKANAT   86 (190)
T ss_dssp             SSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC----------SEEEEEESSCCGGGCEEEEEEEEET-TEEEEEEE
T ss_pred             CceEEEEEEeccCCCCceEEEEEECCEECcccceEe----------ccEEEEEecCCcccCEEEEEEEEeC-CcccccEE
Confidence            899999999988876  7899999998876543211          1367999999999999999999988 65554444


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus        87 l   87 (190)
T 2wv3_A           87 I   87 (190)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.42  E-value=1e-11  Score=67.47  Aligned_cols=70  Identities=19%  Similarity=0.339  Sum_probs=51.6

Q ss_pred             CCceEEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCC-CeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGN-NTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.+.|.|.+.+ .|.|.+.|++++..+............... ......|.|..++.+|+|.|.|.+.|.
T Consensus       241 ~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~  312 (423)
T 3qs7_E          241 VGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH  312 (423)
T ss_dssp             TTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE
T ss_pred             CCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC
Confidence            5889999999988 677999999999877554322211111111 222357999999999999999999998

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.42  E-value=5.8e-12  Score=62.71  Aligned_cols=78  Identities=17%  Similarity=0.314  Sum_probs=55.9

Q ss_pred             CCceEEEEeEe-CccCCCeEEEEe-CCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMA-EGFPRPHITWTK-DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~-~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.+.|.+ .+.|.|.+.|++ ++..+.........   .......+.|.+..++.+|.|.|.|.+.|..|......
T Consensus       124 ~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  200 (222)
T 4i0k_A          124 PGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQM---ANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHG  200 (222)
T ss_dssp             CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEE---ECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEE
T ss_pred             CCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEE---cCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEE
Confidence            57899999998 788999999998 44444432221111   12222234578889999999999999999999887766


Q ss_pred             EEe
Q psy11826         80 RTD   82 (83)
Q Consensus        80 ~~~   82 (83)
                      .|.
T Consensus       201 ~l~  203 (222)
T 4i0k_A          201 SVT  203 (222)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.42  E-value=2e-12  Score=72.66  Aligned_cols=64  Identities=19%  Similarity=0.381  Sum_probs=54.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|+++|..+...                ..|.|..+..+|.|.|.|.+.|..|.......|
T Consensus       573 ~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~~----------------~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~s~~l  636 (642)
T 1e07_A          573 SGANLNLSCHSASNPSPQYSWRINGIPQQHT----------------QVLFIAKITPNNNGTYACFVSNLATGRNNSIVK  636 (642)
T ss_pred             cCCcEEEEEEeccCCCCeEEEEECCEECccC----------------ceEEECcccccCCeEEEEEEEecccCcceeEEE
Confidence            5888999999999999999999999876532                268889999999999999999999987665544

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.41  E-value=3e-13  Score=75.09  Aligned_cols=72  Identities=15%  Similarity=0.094  Sum_probs=58.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.......     ..    ...|.|..++.+|+|.|.|.+.|..|.....+.|
T Consensus       340 ~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~-----~~----~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L  410 (527)
T 3qs9_E          340 QYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL-----DN----GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTL  410 (527)
T ss_dssp             TTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBC-----SS----SSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEE
T ss_pred             CCCeEEEEEEEEecCCCEEEEEECCEECcCCcccc-----cC----CcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEE
Confidence            57889999999999999999999998886543211     01    2368899999999999999999999987776665


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       411 ~  411 (527)
T 3qs9_E          411 N  411 (527)
T ss_dssp             C
T ss_pred             E
Confidence            4

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.41  E-value=4.3e-12  Score=62.99  Aligned_cols=65  Identities=22%  Similarity=0.327  Sum_probs=52.4

Q ss_pred             CCceEEEEeEeCccCCCe-EEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.|.+. +.|++++..+....               ..|.|.+++.+|+|.|.|.+.|........+.
T Consensus        21 ~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~---------------~~L~i~~v~~~D~G~Y~C~a~n~~~s~~~~l~   85 (204)
T 3sgj_C           21 EKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA---------------SSYFIDAATVDDSGEYRCQTQLSTLSDPVQLE   85 (204)
T ss_dssp             TTCCEEEEEECCSSSSCCCEEEEETTEEESCCS---------------SEEEESSCCGGGCEEEEEEETTSBCCCCEEEE
T ss_pred             CCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc---------------cEEEEecccccCCEEEEEEeCCCcccccEEEE
Confidence            589999999999988776 99999998776542               36999999999999999999886555444444


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      +
T Consensus        86 V   86 (204)
T 3sgj_C           86 V   86 (204)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.41  E-value=8.2e-13  Score=64.70  Aligned_cols=61  Identities=18%  Similarity=0.406  Sum_probs=49.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEcc-CCCCCCeEEEEEeeCCCcceeeE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDP-ATQKDAGYYECVADNPFAIDRRG   78 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~~~g~y~C~~~~~~g~~~~~   78 (83)
                      .|+.+.|.|.+.+ +. .+.|++++..+....              ..+|.|.+ ++.+|+|.|.|.+.|..|.....
T Consensus        13 ~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~--------------~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~   74 (186)
T 1jbj_A           13 SGTSVELTCPLDS-DE-NLKWEKNGQELPQKH--------------DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLY   74 (186)
T ss_dssp             ETTEEEEECSSCC-CT-TCEEEETTEEECSCC--------------CSEEEEESCCTTTSCEEEEEECSSCCCCCCEE
T ss_pred             CCcEEEEEEeCCC-CC-ceEEEECCEECCCCC--------------CCEEEECCCCccccCEEEEEEEEeCCCcEEEE
Confidence            5899999999877 44 499999998876531              12699999 99999999999999988764433

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.41  E-value=4.7e-12  Score=65.56  Aligned_cols=75  Identities=27%  Similarity=0.400  Sum_probs=58.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEcc-CCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDP-ATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.......+..     ......|.|.. +..+|.|.|.|.+.|..|.......
T Consensus       118 ~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~  192 (305)
T 2nzi_A          118 RGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV-----TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVE  192 (305)
T ss_dssp             TTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEE-----CSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEE
T ss_pred             CCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEE-----cCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEE
Confidence            48889999999999999999999988776544433321     01135789998 9999999999999999998766655


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      +
T Consensus       193 l  193 (305)
T 2nzi_A          193 L  193 (305)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.41  E-value=8.3e-12  Score=61.41  Aligned_cols=77  Identities=16%  Similarity=0.264  Sum_probs=51.6

Q ss_pred             CCceEEEEeEeC-ccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+. +.|.|.+.|++++..+..... ....  ...........+..+...|.|.|.|.+.|..+.....+.
T Consensus       120 ~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~-~~~~--~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~  196 (201)
T 1dr9_A          120 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINT-TVSQ--DPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFN  196 (201)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEE-EEEE--CTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEE
T ss_pred             CCCeEEEEEecCCccCCCEEEEEECCEECccccc-eEEe--cCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEe
Confidence            367789999984 899999999999987764321 1111  111111111122344568999999999999998887776


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      +
T Consensus       197 ~  197 (201)
T 1dr9_A          197 W  197 (201)
T ss_dssp             E
T ss_pred             c
Confidence            5

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.40  E-value=4.3e-12  Score=62.90  Aligned_cols=72  Identities=17%  Similarity=0.353  Sum_probs=51.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++...... ......    ..   ....|.|.+++.+|.|.|.|.+.|..+.....+.|
T Consensus        15 ~G~~v~L~C~~~g~P~p~i~W~~~~~~~~-~~~~~~----~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l   86 (202)
T 1vca_A           15 IGDSVSLTCSTTGCESPFFSWRTQIDSPL-NGKVTN----EG---TTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV   86 (202)
T ss_dssp             TTSCEEEEEEEESCSSCEEEEEETTCCCC-SSEEEE----ET---TEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred             CCCcEEEEEeecCCCCCeEEEECCCCCCc-cceEEE----cC---CccEEEECcCCHHHCEEEEEEEEECCceEeeEEEE
Confidence            68999999999999999999988431111 111110    01   13469999999999999999999988766555444

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.40  E-value=1.5e-11  Score=59.89  Aligned_cols=75  Identities=23%  Similarity=0.314  Sum_probs=54.5

Q ss_pred             CCceEEEEeEeCccC-CCeEEEEe-CCEEecc-cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc-ceee
Q psy11826          2 LGRKITFFCMAEGFP-RPHITWTK-DDIELTF-HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA-IDRR   77 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~-~~~~~w~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g-~~~~   77 (83)
                      .|+.+.|.|.+.+.+ .+.+.|++ ++..+.. ..........    .....|.|.+++.+|.|.|.|.+.+..+ ....
T Consensus        16 ~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~   91 (191)
T 1epf_A           16 VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA   91 (191)
T ss_dssp             TTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEE----TTEEEEEECSCCGGGCEEEEEEEEETTTEEEEE
T ss_pred             CCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECC----CCceEEEEccCCcccCEEEEEEEEcCCCcceEE
Confidence            589999999998876 78999999 8777663 2333332211    1135799999999999999999998874 3344


Q ss_pred             EEE
Q psy11826         78 GFR   80 (83)
Q Consensus        78 ~~~   80 (83)
                      .+.
T Consensus        92 ~~~   94 (191)
T 1epf_A           92 TVN   94 (191)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.40  E-value=2.4e-12  Score=64.02  Aligned_cols=80  Identities=15%  Similarity=0.130  Sum_probs=52.7

Q ss_pred             CCceEEEEeE---eCccCCCeEEEEeCCEEeccc------ceEEEEEEecC------CCeEEEEEEEccCCCCCCeEEEE
Q psy11826          2 LGRKITFFCM---AEGFPRPHITWTKDDIELTFH------KYFQVHEWFLG------NNTIKSKMEIDPATQKDAGYYEC   66 (83)
Q Consensus         2 ~g~~~~~~C~---~~~~~~~~~~w~~~~~~~~~~------~~~~~~~~~~~------~~~~~~~l~i~~~~~~~~g~y~C   66 (83)
                      +|+.+.|.|.   +.+.|.|.+.|++++......      ...........      .......|.|.+++.+|+|.|.|
T Consensus         7 ~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   86 (203)
T 4fa8_A            7 LGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLC   86 (203)
T ss_dssp             TTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             cCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCeEEEE
Confidence            6999999995   457899999999865322110      00000000000      00113579999999999999999


Q ss_pred             EeeCCCcceeeEEEE
Q psy11826         67 VADNPFAIDRRGFRT   81 (83)
Q Consensus        67 ~~~~~~g~~~~~~~~   81 (83)
                      .+.|..|.....+.|
T Consensus        87 ~a~n~~g~~~~~~~l  101 (203)
T 4fa8_A           87 RMKLGETEVTKQEHL  101 (203)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             EEEcCCCcEEEEEEE
Confidence            999988877666554

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.40  E-value=1.6e-11  Score=60.67  Aligned_cols=74  Identities=11%  Similarity=0.234  Sum_probs=54.0

Q ss_pred             CceEEEEeEeCcc-CCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          3 GRKITFFCMAEGF-PRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         3 g~~~~~~C~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      ++.+.|.|.+.+. |.+.+.|++++..+.......+...  ..   ...|.|.+++.+|.|.|.|.+.|..+.....+.+
T Consensus        17 ~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~--~~---~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l   91 (212)
T 2r15_A           17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVT--GE---QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDL   91 (212)
T ss_dssp             SSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEE--TT---EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             CceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEe--CC---EEEEEECCCCcccCEEEEEEEecCCcceEEEEEE
Confidence            4556666776664 5789999999998876554443221  11   3569999999999999999999988876655544

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.40  E-value=1.8e-12  Score=63.86  Aligned_cols=74  Identities=11%  Similarity=0.201  Sum_probs=53.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+...    ..   .........+.+..+..+|.|.|.|.+.|..|.......|
T Consensus       117 ~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~~----~~---~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l  189 (202)
T 3bp6_B          117 GTGEVQLTCQARGYPLAEVSWQNVSVPANTS----HI---RTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAII  189 (202)
T ss_dssp             TTCCEEEEEEEEEBSCCEEEETTCCSCCEEE----EE---ECTTSCEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEE
T ss_pred             CCCeEEEEEEccccCCceEEEEeCCCCccCc----ee---eCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEE
Confidence            5788999999999999999999876543211    00   1111113456677888899999999999999988776655


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       190 ~  190 (202)
T 3bp6_B          190 D  190 (202)
T ss_dssp             C
T ss_pred             E
Confidence            3

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.39  E-value=7.4e-13  Score=65.64  Aligned_cols=79  Identities=16%  Similarity=0.227  Sum_probs=55.3

Q ss_pred             CCceEEEEeEeCcc-CC-CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEGF-PR-PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.|.|.+.+. |+ +.+.|++++..+...................+.|.|..+..+|.|.|.|.+.|..+.....+
T Consensus       128 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          128 KTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             cCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence            48899999999885 33 38999999988864321110000112223346799999999999999999999987766554


Q ss_pred             E
Q psy11826         80 R   80 (83)
Q Consensus        80 ~   80 (83)
                      .
T Consensus       208 ~  208 (213)
T 3mj8_L          208 S  208 (213)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.39  E-value=2.4e-12  Score=63.01  Aligned_cols=68  Identities=18%  Similarity=0.370  Sum_probs=53.2

Q ss_pred             CCceEEEEeEeCccCCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee-eEE
Q psy11826          2 LGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR-RGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~-~~~   79 (83)
                      .|+.+.|.|.+.+.|.| .+.|++++..+......          .....|.|..++  |.|.|.|.+.|..|... ...
T Consensus       120 ~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~----------~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~  187 (195)
T 2c5d_C          120 ANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH----------GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTA  187 (195)
T ss_dssp             TTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS----------SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCE
T ss_pred             CCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc----------CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEE
Confidence            58889999999999999 99999999877654321          113578888877  78999999999998775 454


Q ss_pred             EE
Q psy11826         80 RT   81 (83)
Q Consensus        80 ~~   81 (83)
                      .|
T Consensus       188 ~l  189 (195)
T 2c5d_C          188 TI  189 (195)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.39  E-value=1.5e-12  Score=68.15  Aligned_cols=74  Identities=14%  Similarity=0.154  Sum_probs=46.0

Q ss_pred             CCceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+.+++  .+.|+++|..+...................+.|.|..+..+|.|.|.|.+.|..+..
T Consensus       234 ~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~  309 (327)
T 2wng_A          234 AENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA  309 (327)
T ss_dssp             STTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred             CCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence            68899999999985444  799999998775432111111111122334678899999999999999999988764

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.39  E-value=1.7e-12  Score=62.40  Aligned_cols=60  Identities=18%  Similarity=0.397  Sum_probs=48.6

Q ss_pred             CCceEEEEeEeC-ccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.+.|.+. +.|.+.+.|++++..+.....             ...|.|..++.+|.|.|.|.+.|..|.
T Consensus        99 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~  159 (170)
T 3ry4_A           99 EGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHL-------------DPTFSIPQANHSHSGDYHCTGNIGYTL  159 (170)
T ss_dssp             TTCCEEEEEEEGGGCCEEEEEEEETTEEEEEESS-------------CCEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             cCCeEEEEEECCCCCCCceEEEEECCeEccccCC-------------CCeEEEEeccccCCEEEEEEEEeCcCc
Confidence            588999999985 456689999999877543211             236999999999999999999998886

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.39  E-value=7.6e-13  Score=65.30  Aligned_cols=72  Identities=19%  Similarity=0.321  Sum_probs=54.7

Q ss_pred             CCceEEEEeEe-CccCCCeEEEEeCC--EEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeE
Q psy11826          2 LGRKITFFCMA-EGFPRPHITWTKDD--IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG   78 (83)
Q Consensus         2 ~g~~~~~~C~~-~~~~~~~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~   78 (83)
                      .|+.+.|.|.+ .+.|.|.+.|++++  ..+......      ...   ...|.|..++.+|.|.|.|.+.|..|.....
T Consensus       135 ~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~------~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~  205 (214)
T 3jz7_A          135 IGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA------EMT---SPVISVKNASSEYSGTYSCTVQNRVGSDQCM  205 (214)
T ss_dssp             TTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGGG------GTT---SSEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             cCCcEEEEecCCCCCCCCEEEEEECCCCCccCcccee------ccC---CCEEEEecCCHHHCEEEEEEEEcCCCcEEEE
Confidence            58889999999 78999999999954  333322110      000   1279999999999999999999999988877


Q ss_pred             EEEe
Q psy11826         79 FRTD   82 (83)
Q Consensus        79 ~~~~   82 (83)
                      +.|.
T Consensus       206 ~~l~  209 (214)
T 3jz7_A          206 LRLD  209 (214)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            7664

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.38  E-value=2.3e-11  Score=54.93  Aligned_cols=74  Identities=18%  Similarity=0.324  Sum_probs=52.0

Q ss_pred             CCceEEEEeEeCc-cCCCeEEEEeCC----EEecccceEEEEEEec-CCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEG-FPRPHITWTKDD----IELTFHKYFQVHEWFL-GNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~~~~w~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      +|+.+.|.|.+.+ .+.|.+.|-+.+    ..+.......  .... .+......|.|.++..+|+|.|.|.+.+..|..
T Consensus        28 ~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~--~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~~g~i  105 (122)
T 1xau_A           28 TGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLY--TSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVI  105 (122)
T ss_dssp             TTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEE--EEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             cCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeee--cceeccCCceeEEEEEeeEEEcCCccEEEEeeCCCCce
Confidence            6899999999866 579999999854    3333222111  1111 122235579999999999999999999988765


Q ss_pred             ee
Q psy11826         76 RR   77 (83)
Q Consensus        76 ~~   77 (83)
                      ..
T Consensus       106 eS  107 (122)
T 1xau_A          106 NS  107 (122)
T ss_dssp             EC
T ss_pred             ee
Confidence            44

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.38  E-value=9.7e-13  Score=70.31  Aligned_cols=71  Identities=30%  Similarity=0.447  Sum_probs=53.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC-EEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD-IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++ ..+......      ...   ...|.|.+++.+|+|.|.|.+.|..|.......
T Consensus       219 ~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~------~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  289 (384)
T 3kld_A          219 KGTTVKLECFALGNPVPTILWRRADGKPIARKARR------HKS---NGILEIPNFQQEDAGSYECVAENSRGKNVAKGQ  289 (384)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEE------CTT---SCEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CCCcEEEEEEEeecCCCcEEEEeCCCcccccccee------cCC---CcEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence            4888999999999999999999854 333322111      011   236999999999999999999999987655444


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus       290 l  290 (384)
T 3kld_A          290 L  290 (384)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.38  E-value=7.4e-12  Score=62.45  Aligned_cols=59  Identities=29%  Similarity=0.573  Sum_probs=51.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....              ...|.|.+++.+|.|.|.|.+.+..+.
T Consensus        32 ~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~--------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~   90 (218)
T 3k0w_A           32 AGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN--------------TSELIFNAVHVKDAGFYVCRVNNNFTF   90 (218)
T ss_dssp             TTSBEEEECEETTTTSSEEEEEETTEECTTCC--------------SSEEEETTCCGGGCEEEEEEEECTTCC
T ss_pred             CCCcEEEEeeecCCCCCEEEEEECCEECCCCC--------------CCEEEEccCChhhCeEeEEEEEcCCCC
Confidence            58899999999999999999999998776542              236999999999999999999998764

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.38  E-value=1.9e-12  Score=63.88  Aligned_cols=72  Identities=26%  Similarity=0.487  Sum_probs=51.4

Q ss_pred             CCceEEEEeE-eCccCCCeEEEEeCCE-EecccceEEE----EEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCM-AEGFPRPHITWTKDDI-ELTFHKYFQV----HEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~-~~~~~~~~~~w~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.+.|. ..+.|.|.+.|++++. .+........    ......  .....|.|..++.+|.|.|.|.+.|..|..
T Consensus       118 ~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  195 (212)
T 1f97_A          118 IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTID--PKSGDLIFDPVTAFDSGEYYCQAQNGYGTA  195 (212)
T ss_dssp             TTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEEC--TTTCCEEESSCCGGGCEEEEEEEECSSSCC
T ss_pred             CCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEec--CCCceEEEEecChhhCcEEEEEEccccCCc
Confidence            5788999999 7899999999999998 6654321100    000000  012469999999999999999999999876

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.38  E-value=1.7e-12  Score=69.24  Aligned_cols=72  Identities=26%  Similarity=0.442  Sum_probs=56.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+....... .   ..    ...|.|..++.+|.|.|.|.+.|..|.....+.|
T Consensus       236 ~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~-~---~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  307 (404)
T 3p3y_A          236 RGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKF-E---NF----NKALRITNVSEEDSGEYFCLASNKMGSIRHTISV  307 (404)
T ss_dssp             TTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEE-E---GG----GTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             cCCCEEEEEEECCCCCCcEEEEECCEECCCCcccc-c---cc----CceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEE
Confidence            47889999999999999999999998776543211 0   01    2379999999999999999999999887665544

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.38  E-value=3.1e-12  Score=62.97  Aligned_cols=78  Identities=15%  Similarity=0.137  Sum_probs=52.3

Q ss_pred             CCceEEEEeEeCccCC-----CeEEEEeCCEEe-cccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFPR-----PHITWTKDDIEL-TFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~-----~~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+.|.     +.+.|++.+... ....+.....  ........+|.|.+++.+|+|.|.|.+.+..+..
T Consensus        16 ~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~   93 (202)
T 3bp6_B           16 VGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLE--EQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWD   93 (202)
T ss_dssp             TTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECG--GGGGGTEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEee--ccccCCeeEEEECCCCHHHCcEEEEEEEeCCCcc
Confidence            5899999999988876     889999944333 2222222111  0001124579999999999999999999988766


Q ss_pred             eeEEEE
Q psy11826         76 RRGFRT   81 (83)
Q Consensus        76 ~~~~~~   81 (83)
                      ...+.|
T Consensus        94 ~~~~~l   99 (202)
T 3bp6_B           94 YKYLTV   99 (202)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            555544

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.38  E-value=4.8e-12  Score=57.04  Aligned_cols=63  Identities=21%  Similarity=0.408  Sum_probs=47.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.+.|.|.+.+.  |.+.|++++..+....++.+...  .   ....|.|.+++.+|+|.|.|.+.|.
T Consensus        22 ~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~--~---~~~~L~I~~v~~~D~G~Y~C~a~n~   84 (108)
T 2dm7_A           22 EGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQD--G---TRCELQIHDLSVADAGEYSCMCGQE   84 (108)
T ss_dssp             TTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEE--T---TEEEEEESSCCTTTCSEEEEEETTE
T ss_pred             CCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEec--C---CEEEEEECCCCcccCEEEEEEEcCC
Confidence            58899999998765  68999999887765444433221  1   1356999999999999999999653

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.37  E-value=7.7e-12  Score=60.61  Aligned_cols=66  Identities=17%  Similarity=0.276  Sum_probs=52.1

Q ss_pred             CCceEEEEeEeCccCCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee-EE
Q psy11826          2 LGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR-GF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~-~~   79 (83)
                      .|+.+.|.|.+.+.|.| .+.|++++..+.....            ....|.|..+  +|.|.|.|.+.|..|.... .+
T Consensus       112 ~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~------------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~  177 (182)
T 1rhf_A          112 PNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP------------SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTA  177 (182)
T ss_dssp             TTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE------------SSEEEEECCC--SSCEEEEEEEEETTEEEECCCE
T ss_pred             CCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC------------CceEEEEecc--ccCeEEEEEEECCCCCcccceE
Confidence            58889999999999999 9999999987764321            1357888877  5889999999999987643 44


Q ss_pred             EE
Q psy11826         80 RT   81 (83)
Q Consensus        80 ~~   81 (83)
                      .|
T Consensus       178 ~l  179 (182)
T 1rhf_A          178 TV  179 (182)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.37  E-value=4.2e-12  Score=63.53  Aligned_cols=78  Identities=13%  Similarity=0.145  Sum_probs=47.1

Q ss_pred             CCceEEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|..+.+.|.+.+ .|.|.+.|++++..+..........   ........+.+..++.+|.|.|+|.+.|..|.......
T Consensus       132 ~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~---~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~  208 (226)
T 4f80_A          132 KDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVA---DGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTAS  208 (226)
T ss_dssp             ETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEE---CTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEE
T ss_pred             cCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEE---CCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEE
Confidence            4778899999887 5999999998654332221111111   11111223334456788999999999999998887776


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus       209 v~  210 (226)
T 4f80_A          209 IS  210 (226)
T ss_dssp             EC
T ss_pred             EE
Confidence            64

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.37  E-value=1.1e-12  Score=63.87  Aligned_cols=61  Identities=10%  Similarity=0.010  Sum_probs=48.2

Q ss_pred             eEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          5 KITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         5 ~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .+.|.|.+.+.|.|.+.|++++..+.....                +.|..+..+|.|.|.|.+.|..|.......|
T Consensus       112 ~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~----------------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l  172 (176)
T 1hng_A          112 NATLTCEVLEGTDVELKLYQGKEHLRSLRQ----------------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVV  172 (176)
T ss_dssp             TTEEEEECSSCSSCEEEEEETTEEEEEESS----------------SEEEEECSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             cEEEEEEecCCCCcEEEEEECCEECCCCCc----------------EEEEEEEccCCeEEEEEEEecCCCceecccc
Confidence            478999999999999999999987654332                2233567899999999999999987765543

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.37  E-value=4.9e-11  Score=61.80  Aligned_cols=72  Identities=17%  Similarity=0.159  Sum_probs=54.9

Q ss_pred             CCceEEEEeEeC-ccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      .|+.+.|.|.+. +.|.+.+.|++++..+.......+....   ......|.|.+++.+|.|.|.|.+.+......
T Consensus       121 ~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~  193 (312)
T 2y23_A          121 EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDR---NTGIIEMFMEKLQDEDEGTYTFQLQDGKATNH  193 (312)
T ss_dssp             SSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEET---TTTEEEEEESCCCGGGCEEEEEEEESSSCEEE
T ss_pred             eCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEcc---CCCEEEEEEccCCcccCEeEEEEEEeCCceEE
Confidence            588999999998 8899999999999988765544333211   11235699999999999999999987554443

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.37  E-value=2.4e-11  Score=59.75  Aligned_cols=68  Identities=12%  Similarity=0.167  Sum_probs=45.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+. .+.+.|++++..+.........   .........|.|.+++.+|.|.|.|.+.|..+
T Consensus       114 ~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~---~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          114 SGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQP---HARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             TTCCEEEEEECSSC-CSEEEEEEC------CEEEC---------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             CCCcEEEEEecCCC-CcEEEEEECCCccCCccccccc---cCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence            58899999999888 7899999998766432110000   00111135799999999999999999999765

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.36  E-value=4.8e-12  Score=61.69  Aligned_cols=66  Identities=27%  Similarity=0.620  Sum_probs=52.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+... .......   .    ...|.|.+++.+|.|.|.|.+.+..|.
T Consensus        21 ~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~---~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~   87 (192)
T 2iep_A           21 VEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRE---N----GQLLTILSVEDSDDGIYCCTANNGVGG   87 (192)
T ss_dssp             TTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEG---G----GTEEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             CCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcC---C----ccEEEEcCCCcccCeEEEEEEEcCCCc
Confidence            5889999999999999999999999877642 2222211   1    126999999999999999999998776

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.36  E-value=1.6e-13  Score=71.18  Aligned_cols=70  Identities=17%  Similarity=0.254  Sum_probs=54.2

Q ss_pred             CCceEEEEeEeCccCCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.|.|.| .+.|++++..+......       .+   ...+.|..++.+|+|.|.|.+.|..|.......
T Consensus       226 ~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~-------~~---~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~  295 (308)
T 4fom_A          226 GRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLLA-------SD---NTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKV  295 (308)
T ss_dssp             TCCSCEEECCEEEESCEEEEECCBSSSCCCSSCBC-------ST---TEEECCSCCCSCCCSEEEEEEEETTEEEEEEEE
T ss_pred             ccccEEEEEEEecCCCCcEEEEEECCeECCCcEEE-------cC---CeEEEECCCChhhCEEEEEEEEeCCCcEEEEEE
Confidence            46788999999999998 59999988766543210       11   235667889999999999999999998877665


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus       296 l  296 (308)
T 4fom_A          296 I  296 (308)
T ss_dssp             C
T ss_pred             E
Confidence            4

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.36  E-value=3e-12  Score=61.99  Aligned_cols=60  Identities=20%  Similarity=0.213  Sum_probs=48.1

Q ss_pred             CCceEEEEeEeCccCCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.+++ .+.|++++..+.....             ...|.|..++.+|.|.|.|.+.|..+.
T Consensus       102 ~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~a~n~~~~  162 (175)
T 1fnl_A          102 EEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHH-------------NSDFHIPKATLKDSGSYFCRGLVGSKN  162 (175)
T ss_dssp             TTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEE-------------CCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCCEEEEEEcCCCCCceEEEEEECCeEccCCCC-------------CCEEEEcccChhhCeEEEEEEEcCCCC
Confidence            58899999999887664 8999999987642210             246999999999999999999997654

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.36  E-value=8.8e-12  Score=69.40  Aligned_cols=76  Identities=13%  Similarity=0.202  Sum_probs=53.5

Q ss_pred             CCceEEEEeEeC----ccCCCeEEEEeCCEEecccceEEE-E-EEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAE----GFPRPHITWTKDDIELTFHKYFQV-H-EWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~----~~~~~~~~w~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.    +.|.|.+.|++++..+........ . ..........+.|.|.++..+|+|.|.|.+.|..|..
T Consensus       456 ~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  535 (585)
T 2ocw_A          456 LGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYG  535 (585)
T ss_pred             cCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCcc
Confidence            588899999986    678889999999977643221000 0 0001112224689999999999999999999998865


Q ss_pred             ee
Q psy11826         76 RR   77 (83)
Q Consensus        76 ~~   77 (83)
                      ..
T Consensus       536 ~~  537 (585)
T 2ocw_A          536 ET  537 (585)
T ss_pred             EE
Confidence            43

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.35  E-value=2.6e-11  Score=62.37  Aligned_cols=78  Identities=17%  Similarity=0.235  Sum_probs=56.9

Q ss_pred             CCceEEEEeEeCccCC-CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPR-PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.|. +.+.|++++..+.........   .......+.|.|.++..+|.|.|.|.+.|..|.....+.
T Consensus       200 ~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  276 (292)
T 4dkd_C          200 RGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFH---NNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMF  276 (292)
T ss_dssp             SSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEE---TTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEE
T ss_pred             cCCCEEEEEEecCCCCceEEEEeCCCcccccCccceec---cceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEE
Confidence            5889999999887665 457888887765543321111   111223468999999999999999999999998877766


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus       277 l~  278 (292)
T 4dkd_C          277 FR  278 (292)
T ss_dssp             EC
T ss_pred             EE
Confidence            64

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.35  E-value=2.1e-12  Score=64.08  Aligned_cols=59  Identities=20%  Similarity=0.194  Sum_probs=46.7

Q ss_pred             CCceEEEEeEeCcc-CCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGF-PRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+. |.+.+.|++++..+.....             ...|.|..++.+|.|.|.|.+.|..+
T Consensus       102 ~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~-------------~~~L~i~~v~~~D~G~Y~C~a~n~~~  161 (204)
T 3sgj_C          102 EEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH-------------NSDFYIPKATLKDSGSYFCRGLVGSK  161 (204)
T ss_dssp             TTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEEE-------------CCCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCCcEEEEEEecCCCCCceEEEEECCcEeecccC-------------CceEEECcCCcccCEEEEEEEEeCCC
Confidence            58899999998665 5678999999987543211             23699999999999999999999433

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.35  E-value=1.1e-11  Score=60.01  Aligned_cols=65  Identities=22%  Similarity=0.335  Sum_probs=51.5

Q ss_pred             CCceEEEEeEeCccCCCe-EEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.|.+. +.|++++..+...               ...|.|.+++.+|.|.|.|.+.+..+.....+.
T Consensus        21 ~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~---------------~~~L~i~~~~~~d~G~Y~C~~~n~~~s~~~~l~   85 (175)
T 1fnl_A           21 EKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ---------------ASSYFIDAATVNDSGEYRCQTNLSTLSDPVQLE   85 (175)
T ss_dssp             TTCCEEEEEECCCBTTBCCCEEEETTEEEESS---------------CSEEEESSCCGGGCEEEEEECSSSCCCCCEEEE
T ss_pred             CCCcEEEEeeCCCCCCCcceEEEECCEEccCC---------------ceEEEEeCCCcccCEEEEEEeeCCcccccEEEE
Confidence            588999999999888776 7899999776532               236999999999999999999986665444443


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      +
T Consensus        86 V   86 (175)
T 1fnl_A           86 V   86 (175)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.35  E-value=6.8e-14  Score=79.57  Aligned_cols=73  Identities=25%  Similarity=0.414  Sum_probs=0.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+.........       ...++|.|.++..+|+|.|.|.+.|..|.......|
T Consensus       680 ~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~-------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l  752 (772)
T 3v2a_R          680 IGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK-------DGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF  752 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEc-------CCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEE
Confidence            4788999999999999999999999877654332211       113579999999999999999999999987766544

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.35  E-value=3.1e-11  Score=66.61  Aligned_cols=78  Identities=19%  Similarity=0.255  Sum_probs=57.0

Q ss_pred             CCceEEEEeEeCccCCCe-EEEEeCCEEe--cccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeE
Q psy11826          2 LGRKITFFCMAEGFPRPH-ITWTKDDIEL--TFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG   78 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~-~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~   78 (83)
                      .|+.+.|.|.+.+.|.|. +.|++++..+  .........  ..........|.|.+++.+|.|.|.|.+.|..|.....
T Consensus       225 ~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~  302 (524)
T 2ec8_A          225 EGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHH--GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVT  302 (524)
T ss_dssp             TTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEEC--SSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEE
T ss_pred             cCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccc--cCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEE
Confidence            588999999999998887 9999998763  222111110  00022335689999999999999999999999887665


Q ss_pred             EEE
Q psy11826         79 FRT   81 (83)
Q Consensus        79 ~~~   81 (83)
                      +.|
T Consensus       303 ~~l  305 (524)
T 2ec8_A          303 TTL  305 (524)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.35  E-value=4.2e-12  Score=67.30  Aligned_cols=80  Identities=10%  Similarity=0.025  Sum_probs=56.3

Q ss_pred             CCceEEEEeEeCc-----cCCCeEEEEeCCEEecc--------cceEEEEEEecC-----CCeEEEEEEEccCCCCCCeE
Q psy11826          2 LGRKITFFCMAEG-----FPRPHITWTKDDIELTF--------HKYFQVHEWFLG-----NNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         2 ~g~~~~~~C~~~~-----~~~~~~~w~~~~~~~~~--------~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~~~g~   63 (83)
                      .|+.+.|.|.+.+     .|.|.+.|++++..+..        .....+......     .......|.|.+++.+|+|.
T Consensus       190 ~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  269 (363)
T 1wio_A          190 EGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGS  269 (363)
T ss_dssp             TBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEE
T ss_pred             cCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcE
Confidence            5889999998776     77889999999877654        222222111100     01112379999999999999


Q ss_pred             EEEEeeCC--CcceeeEEEE
Q psy11826         64 YECVADNP--FAIDRRGFRT   81 (83)
Q Consensus        64 y~C~~~~~--~g~~~~~~~~   81 (83)
                      |.|.+.|.  .|.......|
T Consensus       270 Y~C~a~n~~~~g~~~~~~~l  289 (363)
T 1wio_A          270 GNLTLALEAKTGKLHQEVNL  289 (363)
T ss_dssp             EEEEECBTTTTCCEEEEEEE
T ss_pred             EEEEEEEhhhcCeEEEEEeE
Confidence            99999999  8876666554

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.35  E-value=2.6e-12  Score=68.45  Aligned_cols=73  Identities=18%  Similarity=0.299  Sum_probs=54.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~   77 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.......+..   ........|.|..+..+|.|.|.|.+.|..|....
T Consensus       226 ~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  298 (395)
T 1bih_A          226 AGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITR---HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK  298 (395)
T ss_dssp             TTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEES---CSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred             CCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEE---EecCCCceEEEccCChhhCEEEEEEEEeCCCCceE
Confidence            58889999999999999999999998876532211111   00111236999999999999999999999887543

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.34  E-value=1.6e-12  Score=64.57  Aligned_cols=64  Identities=16%  Similarity=0.389  Sum_probs=50.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccce-EEEEEEecCCCeEEEEEEEccC-CCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPA-TQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~-~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.  +.|.|.+.|++++..+..... ..+..       ....|.|.++ +.+|+|.|.|.+.|..|.
T Consensus       127 ~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~-------~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~  192 (204)
T 1sy6_A          127 SGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGS-------DEDHLSLKEFSELEQSGYYVCYPRGSKPE  192 (204)
T ss_dssp             ETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEE-------ETTEEEETTCCHHHHCEEEEEEETTSCGG
T ss_pred             cCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEec-------CCCEEEEeeCCccccCEEEEEEeccCCCC
Confidence            5889999998  788899999999988764311 00100       0247999999 999999999999999986

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.34  E-value=4.3e-13  Score=58.04  Aligned_cols=53  Identities=21%  Similarity=0.497  Sum_probs=43.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccC-CCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPA-TQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~~~g~y~C~~~~   70 (83)
                      .|+.++|.|.+.+.|.  +.|++++..+....              ...|.|.++ ..+|+|.|.|.+..
T Consensus        13 ~G~~v~L~C~~~g~P~--i~W~kdg~~l~~~~--------------~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E           13 SGTSVELTCPLDSDEN--LKWEKNGQELPQKH--------------DKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             ETTEEEEECSSCCCSS--CEEEETTEECTTCC--------------SSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             cCCeEEEEEECCCCCc--EEEEECCEECcCCC--------------CCEEEECccCccCcCEEEEEEEcc
Confidence            4889999999988874  99999998876431              136888996 78999999999865

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.34  E-value=3.5e-12  Score=61.75  Aligned_cols=60  Identities=20%  Similarity=0.268  Sum_probs=48.1

Q ss_pred             CCceEEEEeEeC-ccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+. +.|.+.+.|++++..+.....             ...|.|..++.+|.|.|.|.+.|..+.
T Consensus        99 ~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~a~n~~~~  159 (176)
T 1f2q_A           99 EGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE-------------NHNISITNATVEDSGTYYCTGKVWQLD  159 (176)
T ss_dssp             TTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC-------------SSEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCCEEEEEEecCCCCceEEEEEECCEEEeeecC-------------CCeEEECCCCcccCEEEEEEEEeCCcc
Confidence            588999999984 566779999999987753221             237999999999999999999986443

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.33  E-value=7.5e-12  Score=65.70  Aligned_cols=64  Identities=20%  Similarity=0.318  Sum_probs=51.1

Q ss_pred             CCceEEEEeEeCccC-CCeEEEEeCCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC--Ccc
Q psy11826          2 LGRKITFFCMAEGFP-RPHITWTKDDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP--FAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~-~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~--~g~   74 (83)
                      .|+.+.|.|.+.+.| .|.+.|++++..+... ......         ...|.|.+++.+|.|.|.|.+.|.  .|.
T Consensus       142 ~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~---------~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~  209 (329)
T 3oq3_B          142 DKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQS---------GQNLIIHNPELEDSGRYDCYVHYDDVRIK  209 (329)
T ss_dssp             TTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEE---------TTEEEECSCCGGGCEEEEEEEEECCTTSS
T ss_pred             CCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecC---------CCEEEEeecChhhCEEEEEEEEecccCCC
Confidence            588999999999999 8999999999887532 222111         147999999999999999999986  544

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.33  E-value=2.8e-11  Score=61.36  Aligned_cols=64  Identities=17%  Similarity=0.291  Sum_probs=52.8

Q ss_pred             CCceEEEEeEeCccCCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.|.+ .+.|++++..+....               ..|.|..++.+|.|.|.|.+.+..+.....+.
T Consensus        15 ~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~---------------~~l~i~~~~~~d~G~Y~C~~~~~~~s~~~~l~   79 (262)
T 3rjd_A           15 QEETVTLHCEVLHLPGSSSTQWFLNGTATQTST---------------PSYRITSASVNDSGEYRCQRGLSGRSDPIQLE   79 (262)
T ss_dssp             TTCCEEEEEECSSCCCTTCEEEEETTEECSCCS---------------SEEEESSCCGGGCEEEEEEESSSCCCCCEEEE
T ss_pred             CCCeEEEEEECCCCCCCceEEEEECCEEeeccC---------------CeEEEecCCcccCeEEEEEEecCCccccEEEE
Confidence            58899999999998888 899999998776432               26889999999999999999987766544443

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.33  E-value=3.9e-12  Score=63.02  Aligned_cols=74  Identities=15%  Similarity=0.241  Sum_probs=51.1

Q ss_pred             CCceEEEEeEeCcc-CCC-eEEEEeCCEEeccc-ceE-EEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGF-PRP-HITWTKDDIELTFH-KYF-QVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~-~~~w~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+. |.+ .+.|+++|..+... ... .............+.|.|..+..+|.|.|.|.+.|.....
T Consensus       125 ~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          125 ATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             cCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence            47889999999874 444 79999999887654 110 0000001122345689999999999999999999976643

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.33  E-value=1.1e-11  Score=60.96  Aligned_cols=68  Identities=10%  Similarity=0.099  Sum_probs=44.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+.| +.+.|++++..+.......   ...........|.|.+++.+|.|.|.|.+.|..+
T Consensus       113 ~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          113 SGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDS---QLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             ----CEEEEEESSCC-SEEEEEEC---CCEEEEEC---EECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             CCCcEEEEEEcCCCC-CEEEEEccCCccccccccc---ccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            588899999999988 8999999987664321100   0011122346799999999999999999998654

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.32  E-value=3.7e-11  Score=66.88  Aligned_cols=70  Identities=19%  Similarity=0.330  Sum_probs=52.8

Q ss_pred             CCceEEEEeEeC-ccCCCeEEEEeCCEEecccceEEEEEEecCC-CeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGN-NTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.+.|.|.+. +.|.|.+.|++++..+............... ......|.|.+++.+|+|.|.|.+.|.
T Consensus       241 ~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~  312 (527)
T 3qs9_E          241 VGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH  312 (527)
T ss_dssp             TTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE
T ss_pred             CCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC
Confidence            689999999996 8999999999999877654433222211111 122456999999999999999999987

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.32  E-value=4.5e-12  Score=58.80  Aligned_cols=79  Identities=15%  Similarity=0.166  Sum_probs=52.0

Q ss_pred             CCceEEEEeEeCccCC---CeEEEEeCCEEecc-----------c------ceEEEEEEecCCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGFPR---PHITWTKDDIELTF-----------H------KYFQVHEWFLGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~---~~~~w~~~~~~~~~-----------~------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   61 (83)
                      +|+++.|.|.....+.   ..+.|++.+.....           .      .+...  ..........+|.|.+++.+|+
T Consensus        19 vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~--~~~~~~~g~~sL~I~~v~~~D~   96 (125)
T 4gos_A           19 IGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAV--FADQVIVGNASLRLKNVQLTDA   96 (125)
T ss_dssp             TTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEE--CTTTGGGTBCCEEESSCCGGGC
T ss_pred             CCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEE--ecCCccCCeEEEEECCCChHHC
Confidence            6899999999764333   36899985431110           0      00110  0000111235799999999999


Q ss_pred             eEEEEEeeCCCcceeeEEEEe
Q psy11826         62 GYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus        62 g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      |.|.|.+.+..+..+..+.|+
T Consensus        97 G~Y~C~v~~~~g~~~~~v~Lk  117 (125)
T 4gos_A           97 GTYKCYIITSKGKGNANLEYK  117 (125)
T ss_dssp             EEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEEEeCCCeEEEEEEEE
Confidence            999999999998888777765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.32  E-value=9.4e-12  Score=67.70  Aligned_cols=71  Identities=17%  Similarity=0.302  Sum_probs=52.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCE-Eecccc---eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDI-ELTFHK---YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~   77 (83)
                      +|+.+.+.|.+ +.|.|.+.|++++. .+....   +....    .    ..+|.|.+++.+|+|.|.|.+.|..|....
T Consensus       355 ~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~~----~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  425 (440)
T 3zyj_A          355 EGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVL----S----DGTLNFTNVTVQDTGMYTCMVSNSVGNTTA  425 (440)
T ss_dssp             TTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEEC----T----TCCEEESSCCSTTCEEEEEEEECSSCEEEE
T ss_pred             cCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEEEc----c----CCeEEEccCChhhCEEEEEEEEcCCCcEEE
Confidence            58899999998 57899999998543 332211   11110    0    125999999999999999999999998877


Q ss_pred             EEEE
Q psy11826         78 GFRT   81 (83)
Q Consensus        78 ~~~~   81 (83)
                      ...+
T Consensus       426 ~~~~  429 (440)
T 3zyj_A          426 SATL  429 (440)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6554

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.32  E-value=3.7e-12  Score=63.10  Aligned_cols=73  Identities=12%  Similarity=0.254  Sum_probs=51.3

Q ss_pred             CceEEEEeEeCc-cCCC-eEEEEeCCEEecccceEEEEEE--ecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          3 GRKITFFCMAEG-FPRP-HITWTKDDIELTFHKYFQVHEW--FLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         3 g~~~~~~C~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      |+.+.|.|.+.+ .|.+ .+.|++++..+...........  ........+.|.|..+..+|.|.|.|.+.|.....
T Consensus       127 g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          127 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            678999999987 5555 7999999988765411111000  01112235689999999999999999999977653

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.32  E-value=6.9e-12  Score=61.62  Aligned_cols=65  Identities=18%  Similarity=0.328  Sum_probs=49.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.++|.|.+.+ +.+.+.|++++..+......      .........|.|.+++.+|+|.|.|.+.|..|
T Consensus        18 ~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~------~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (196)
T 3p2t_A           18 WGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQN------PLEPKNKARFSIPSMTEDYAGRYRCYYRSPVG   82 (196)
T ss_dssp             TTCCEEEEEECCT-TCCEEEEEETTSCSCSEEEC------CCSSSSEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCCcEEEEeeCCC-CCCEEEEEECCCCCcccccc------cccCCceEEEEeccCCcccCceEEEEEeCCCc
Confidence            5899999999887 77899999998766532110      00111245799999999999999999998876

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.32  E-value=8e-11  Score=60.55  Aligned_cols=69  Identities=25%  Similarity=0.349  Sum_probs=51.5

Q ss_pred             CCceEEEEeEeCccC-CCeEEEEe-CCEEeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFP-RPHITWTK-DDIELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~-~~~~~w~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.+ .+.+.|++ ++..+... .........    .....|.|.+++.+|.|.|.|.+.+..|.
T Consensus        16 ~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~----~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~   87 (291)
T 1qz1_A           16 VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND----DDSSTLTIYNANIDDAGIYKCVVTAEDGT   87 (291)
T ss_dssp             TTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEE----TTEEEEEECSCCGGGCEEEEEEEECTTSC
T ss_pred             CCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcC----CCeEEEEEecCCCCCCEEEEEEEEcCCCC
Confidence            589999999999886 68999998 77666532 222222110    11457999999999999999999998754

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.31  E-value=9.6e-12  Score=61.82  Aligned_cols=73  Identities=15%  Similarity=0.277  Sum_probs=50.5

Q ss_pred             CceEEEEeEeCc-cCCC-eEEEEeCCEEecccceEEEEEE--ecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          3 GRKITFFCMAEG-FPRP-HITWTKDDIELTFHKYFQVHEW--FLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         3 g~~~~~~C~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      |+.+.|.|.+.+ .|.| .+.|++++..+...........  ........+.|.|..+..+|.|.|.|.+.|.....
T Consensus       129 g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  205 (216)
T 2xzc_L          129 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  205 (216)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             CCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence            678999999988 4554 8999999987764411110000  01112344579999999999999999999977543

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.31  E-value=1.9e-11  Score=67.45  Aligned_cols=74  Identities=14%  Similarity=0.210  Sum_probs=52.6

Q ss_pred             CCceEEEEeEeCccCC----CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFPR----PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+.++    +.+.|++++..+...................+.|.|..+..+|.|.|.|.+.|..+..
T Consensus       333 ~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  410 (523)
T 2rcj_C          333 ISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPA  410 (523)
T ss_pred             cCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCC
Confidence            4889999999988654    4899999998876543211111111122344679999999999999999999876654

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.31  E-value=6.9e-13  Score=69.83  Aligned_cols=80  Identities=18%  Similarity=0.191  Sum_probs=37.9

Q ss_pred             CCceEEEEeEeC----ccCCCeEEEEeCCEEecc-cceEEEEEEe----cCCCeEEEEEEEccCCCCCC-eEEEEEeeCC
Q psy11826          2 LGRKITFFCMAE----GFPRPHITWTKDDIELTF-HKYFQVHEWF----LGNNTIKSKMEIDPATQKDA-GYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~----~~~~~~~~w~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~l~i~~~~~~~~-g~y~C~~~~~   71 (83)
                      .|+.+.|.|.+.    +.|.|.+.|++++..+.. ..........    .......+.|.|..+..+|. |.|.|.+.|.
T Consensus       240 ~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~  319 (349)
T 4dep_C          240 PGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSA  319 (349)
T ss_dssp             -----CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECS
T ss_pred             cCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcC
Confidence            477889999987    578899999999877654 1111110000    01122345699999999999 9999999999


Q ss_pred             CcceeeEEEE
Q psy11826         72 FAIDRRGFRT   81 (83)
Q Consensus        72 ~g~~~~~~~~   81 (83)
                      .|.....+.|
T Consensus       320 ~G~~~~~~~l  329 (349)
T 4dep_C          320 KGEVAKAAKV  329 (349)
T ss_dssp             SCEEEEECC-
T ss_pred             CCcEEEEEEE
Confidence            9987766544

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.30  E-value=1.6e-11  Score=60.80  Aligned_cols=78  Identities=13%  Similarity=0.149  Sum_probs=53.2

Q ss_pred             CCceEEEEeEeCccCCC--eEEEEeCCEEecccceEE-EEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeE
Q psy11826          2 LGRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQ-VHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG   78 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~   78 (83)
                      .|+.+.|.|.+.+.+++  .+.|++++..+....... ............+.|.|..+..+|.|.|.|.+.|........
T Consensus       129 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  208 (212)
T 1q0x_L          129 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKT  208 (212)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEE
T ss_pred             cCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeee
Confidence            47789999999886443  799999998876542110 011111122344678999999999999999999987665544


Q ss_pred             E
Q psy11826         79 F   79 (83)
Q Consensus        79 ~   79 (83)
                      +
T Consensus       209 v  209 (212)
T 1q0x_L          209 L  209 (212)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.30  E-value=8.8e-12  Score=66.57  Aligned_cols=72  Identities=22%  Similarity=0.468  Sum_probs=56.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccce-EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+..... ....    .    ...|.|..+..+|.|.|.|.+.|..|.......
T Consensus       235 ~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~----~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  306 (403)
T 3laf_A          235 EGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL----G----GSNLLISNVTDDDSGTYTCVVTYKNENISASAE  306 (403)
T ss_dssp             TTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEE----T----TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEEC----C----ccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEE
Confidence            588899999999999999999999987764322 1111    1    136999999999999999999998887665554


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus       307 l  307 (403)
T 3laf_A          307 L  307 (403)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.30  E-value=8.1e-12  Score=68.15  Aligned_cols=71  Identities=17%  Similarity=0.324  Sum_probs=53.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC-EEecccc---eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD-IELTFHK---YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~   77 (83)
                      +|+.+.+.|.+.  |.|.+.|++++ ..+....   +....    .    ..+|.|..++.+|+|.|.|.+.|..|....
T Consensus       366 ~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~~~~----~----~g~L~i~~v~~~D~G~Y~C~a~N~~G~~~~  435 (452)
T 3zyi_A          366 EGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVL----N----DGTLNFSHVLLSDTGVYTCMVTNVAGNSNA  435 (452)
T ss_dssp             TTSCCEECCBCC--TTSEEEEECTTSCEECSSCCCSSCEEC----T----TSCEECSSCCTTCCEEEEEEEECSSCEEEE
T ss_pred             CCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCCCCEEEC----C----CCeEEEeecCHHHCEEEEEEEEcCCCcEEE
Confidence            588999999987  99999999854 3333221   11110    0    135999999999999999999999999887


Q ss_pred             EEEEe
Q psy11826         78 GFRTD   82 (83)
Q Consensus        78 ~~~~~   82 (83)
                      ...+.
T Consensus       436 ~~~l~  440 (452)
T 3zyi_A          436 SAYLN  440 (452)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77664

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.29  E-value=1.7e-11  Score=59.34  Aligned_cols=65  Identities=18%  Similarity=0.290  Sum_probs=49.9

Q ss_pred             CCceEEEEeEeCccCCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.+.+ .+.|++++..+....               ..|.|.+++.+|.|.|.|.+.+..+.....+.
T Consensus        18 ~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~---------------~~L~i~~v~~~d~G~Y~C~~~~~~~s~~~~l~   82 (176)
T 1f2q_A           18 KGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN---------------SSLNIVNAKFEDSGEYKCQHQQVNESEPVYLE   82 (176)
T ss_dssp             TTCCEEEECCTTCC----CCEEEETTEECSCCS---------------SEEEECSCCGGGCEEEEEECTTSSCCCCEEEE
T ss_pred             cCCcEEEEEeCCCCCCcceEEEEECCeECCCCc---------------eEEEEeccceecCEEEEEEcCCccccccEEEE
Confidence            58899999999888775 589999998776432               36999999999999999999987765544444


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      +
T Consensus        83 V   83 (176)
T 1f2q_A           83 V   83 (176)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.29  E-value=2.1e-12  Score=67.66  Aligned_cols=81  Identities=22%  Similarity=0.353  Sum_probs=55.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe----CCEEecccce--EEEEEEec--CCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK----DDIELTFHKY--FQVHEWFL--GNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~----~~~~~~~~~~--~~~~~~~~--~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+.|.|.+.|++    ++..+.....  ..+.....  ......+.|.|..++.+|.|.|.|.+.|..|
T Consensus       236 ~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  315 (334)
T 1ry7_B          236 LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIG  315 (334)
T ss_dssp             SSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSC
T ss_pred             CCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCC
Confidence            47889999999999999999999    5555433211  00000000  0001123699999999999999999999999


Q ss_pred             ceeeEEEEe
Q psy11826         74 IDRRGFRTD   82 (83)
Q Consensus        74 ~~~~~~~~~   82 (83)
                      .....+.|.
T Consensus       316 ~~~~~~~l~  324 (334)
T 1ry7_B          316 FSHHSAWLV  324 (334)
T ss_dssp             CEEEEEEEE
T ss_pred             eEEEEEEEE
Confidence            887766553

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.29  E-value=6.6e-12  Score=62.35  Aligned_cols=78  Identities=10%  Similarity=0.147  Sum_probs=50.6

Q ss_pred             CceEEEEeEeCc-cCCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          3 GRKITFFCMAEG-FPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         3 g~~~~~~C~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      |+.+.|.|.+.+ .|.| .+.|++++..+...................+.|.+......|.|.|.|.+.|..+.....+.
T Consensus       136 ~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~  215 (218)
T 3s96_B          136 ENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSLS  215 (218)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEEC
T ss_pred             CCcEEEEEEECcccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCccccccc
Confidence            567899999988 5666 89999999887652211111101122223456888888888899999999999887665543

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.29  E-value=3.1e-12  Score=62.24  Aligned_cols=66  Identities=15%  Similarity=0.216  Sum_probs=47.1

Q ss_pred             CCceEEEEeEeCc--cCCCeEEEEeCCEEecc----------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          2 LGRKITFFCMAEG--FPRPHITWTKDDIELTF----------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         2 ~g~~~~~~C~~~~--~~~~~~~w~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      +|+.+.|.|....  .+.+.+.|++++..+..          ..+..+     ..   ..+|.|.+++.+|+|.|.|.+.
T Consensus        10 ~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~-----~~---~gsL~I~~v~~~D~G~Y~C~~~   81 (176)
T 1hng_A           10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI-----LA---NGDLKIKNLTRDDSGTYNVTVY   81 (176)
T ss_dssp             TTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEE-----CT---TSCEEESSCCGGGCEEEEEEEE
T ss_pred             cCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEE-----CC---CCcEEEcccccccCEEEEEEEE
Confidence            6889999995333  55678999999865431          111111     00   1249999999999999999999


Q ss_pred             CCCcce
Q psy11826         70 NPFAID   75 (83)
Q Consensus        70 ~~~g~~   75 (83)
                      |..|..
T Consensus        82 n~~g~~   87 (176)
T 1hng_A           82 STNGTR   87 (176)
T ss_dssp             ETTCCE
T ss_pred             eCCCCE
Confidence            988875

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.29  E-value=3.8e-12  Score=63.66  Aligned_cols=73  Identities=12%  Similarity=0.190  Sum_probs=50.8

Q ss_pred             CCceEEEEeEeCcc---CC-CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGF---PR-PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~---~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.   |. +.+.|++++..+...................+.|.|..++.+|.|.|.|.+.+..+.
T Consensus        25 ~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~  101 (218)
T 2rgs_A           25 ISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLP  101 (218)
T ss_dssp             TTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCS
T ss_pred             cCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCC
Confidence            68999999998887   33 789999999776543211111100111123467999999999999999999987654

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.28  E-value=1.4e-11  Score=61.64  Aligned_cols=80  Identities=14%  Similarity=0.159  Sum_probs=51.7

Q ss_pred             CCceEEEEeEeCccCCC---eEEEEeCCEEec-----------ccc----eEEEEEEecCCCeEEEEEEEccCCCCCCeE
Q psy11826          2 LGRKITFFCMAEGFPRP---HITWTKDDIELT-----------FHK----YFQVHEWFLGNNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~---~~~w~~~~~~~~-----------~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   63 (83)
                      +|+.+.|.|.+.+.+.+   .+.|++++....           ...    ..+.............+|.|.+++.+|+|.
T Consensus        18 ~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~   97 (226)
T 4f80_A           18 VGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGK   97 (226)
T ss_dssp             TTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCGGGCEE
T ss_pred             cCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCchHHCee
Confidence            69999999998766544   689998653211           000    000000001111234679999999999999


Q ss_pred             EEEEeeCCCcceeeEEEE
Q psy11826         64 YECVADNPFAIDRRGFRT   81 (83)
Q Consensus        64 y~C~~~~~~g~~~~~~~~   81 (83)
                      |.|.+.|..+.....+.+
T Consensus        98 Y~C~a~n~~~~~~~~v~~  115 (226)
T 4f80_A           98 YLCYFQDGDFYEKALVEL  115 (226)
T ss_dssp             EEEEEEETTEEEEEEEEE
T ss_pred             EEEEEECCCcEEEEEEEE
Confidence            999999988876655543

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.28  E-value=5.1e-11  Score=57.17  Aligned_cols=65  Identities=18%  Similarity=0.270  Sum_probs=49.5

Q ss_pred             CCceEEEEeEeCccC-CCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFP-RPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.| .+.+.|++++..+.....               .+.+..++.+|.|.|.|.+.+........+.
T Consensus        18 ~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~---------------~~~~~~~~~~d~G~Y~C~~~~~~~s~~~~l~   82 (170)
T 3ry4_A           18 QEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ---------------PSYRFKANNNDSGEYTCQTGQTSLSDPVHLT   82 (170)
T ss_dssp             TTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS---------------SEEEEECCGGGCEEEEEEETTSBCCCCEEEE
T ss_pred             CCCcEEEEEEecCCCCcceEEEEECCeEcccCcc---------------ceEEEecccccCeEEEEEEeCCCceEeEEEE
Confidence            588999999988886 578999999988765421               2445678999999999999986655444443


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      +
T Consensus        83 v   83 (170)
T 3ry4_A           83 V   83 (170)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.27  E-value=3.7e-11  Score=59.01  Aligned_cols=67  Identities=18%  Similarity=0.413  Sum_probs=48.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+ +.+.+.|++++..+..........    .......|.|.+++.+|+|.|.|.+.|..+
T Consensus       113 ~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          113 SGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHG----AQQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             TTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEEEE----EEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             CCCeEEEEEecCC-CCCEEEEEeCCCcccceeeccccc----ccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            5889999999876 456899999987665432111100    011245799999999999999999999876

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.27  E-value=1.5e-12  Score=68.18  Aligned_cols=76  Identities=24%  Similarity=0.435  Sum_probs=56.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.........    ........|.|..++.+|.|.|.|.+.|..|.....+.|
T Consensus       137 ~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  212 (334)
T 1ry7_B          137 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGI----KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL  212 (334)
T ss_dssp             TTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCC----CCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEE
T ss_pred             CCCcEEEEEEccCCCCCeEEEEECCEECcccccccce----ecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEE
Confidence            4788999999999999999999998876543221000    000112369999999999999999999988876655544

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.27  E-value=1.5e-12  Score=64.11  Aligned_cols=74  Identities=24%  Similarity=0.413  Sum_probs=52.7

Q ss_pred             CCceEEEEeEe-CccCCCeEEEEeCCEEecccceEEEEE--EecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHE--WFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+ .+.|.|.+.|++++..+..........  .........+.|.|..++.+|.|.|.|.+.|..|..
T Consensus       121 ~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  197 (209)
T 1nbq_A          121 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP  197 (209)
T ss_dssp             TTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCC
T ss_pred             cCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcc
Confidence            57889999996 899999999999988765432110000  000000012479999999999999999999999877

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.27  E-value=1.4e-11  Score=61.08  Aligned_cols=73  Identities=23%  Similarity=0.355  Sum_probs=52.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+.......... ..........+.|..++.+|.|.|.|.+.|..|..
T Consensus        23 ~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~-~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~   95 (217)
T 2vr9_A           23 KNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRV-QFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA   95 (217)
T ss_dssp             TTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEE-ECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEE
T ss_pred             CCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeE-EecCCceEEEEEeccCCcccCceEEEEEecCCCcc
Confidence            68999999999999999999999998876532100000 01122222334678899999999999999887754

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.26  E-value=4.6e-11  Score=54.09  Aligned_cols=59  Identities=20%  Similarity=0.287  Sum_probs=42.3

Q ss_pred             CCceEEEEeEeCccCCC-----eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRP-----HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.++|.|...+.+..     .+.|++++..+....             ....|.|..++.+|+|.|.|.+.+..+
T Consensus        21 ~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~~~-------------~~~~l~i~~v~~~dsG~Y~C~~~~~~~   84 (108)
T 4hwn_A           21 AGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQSRG-------------LSSEFQIPTASEDHSGSYWCEAATEDN   84 (108)
T ss_dssp             TTCCEEEEEEC---------CCEEEEEETTEEEEEEE-------------SCCEEEESSCCGGGCEEEEEEEECTTS
T ss_pred             CCCcEEEEEcccCCCCCcCcceEEEEEECCcCccCCC-------------cccEEEeCccCcccCeEEEEEEEeCCC
Confidence            58999999997655443     389999998664210             024699999999999999999998654

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.26  E-value=9e-11  Score=52.94  Aligned_cols=66  Identities=20%  Similarity=0.349  Sum_probs=46.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--E---Eecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--I---ELTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~---~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.+.|.|.+.+.|.+.+.|++..  .   .+..         ..++....     ......|.|.+++.+|+|.|.|.
T Consensus        15 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~   89 (108)
T 1jhl_L           15 PGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSG-----SGTDFTLTISSLEPEDFAMYICQ   89 (108)
T ss_dssp             TTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----SSSEEEEEECSCCTTCCSEEEEE
T ss_pred             CCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEe-----cCCEEEEEECCCCHHHCEEEEEE
Confidence            6899999999999888999999843  1   1110         11121110     11235799999999999999999


Q ss_pred             eeCCC
Q psy11826         68 ADNPF   72 (83)
Q Consensus        68 ~~~~~   72 (83)
                      +.|..
T Consensus        90 ~~n~~   94 (108)
T 1jhl_L           90 QHNEY   94 (108)
T ss_dssp             ECSSS
T ss_pred             EccCC
Confidence            98863

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.26  E-value=3.6e-11  Score=63.36  Aligned_cols=62  Identities=18%  Similarity=0.209  Sum_probs=49.5

Q ss_pred             CCceEEEEeEe-----CccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          2 LGRKITFFCMA-----EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~-----~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .|+.+.|.|..     .+.|.|.+.|++++..+.........         ...|.|.+++.+|.|.|.|.+.|..
T Consensus       134 ~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a~n~~  200 (349)
T 4dep_C          134 EYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPE---------GMNLSFLIALISNNGNYTCVVTYPE  200 (349)
T ss_dssp             TCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEEEE---------TTEEEEESCCGGGCEEEEEEEEEEE
T ss_pred             cCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccceeec---------CCEEEEeeeeecCCcEEEEEEEEee
Confidence            57889999974     67889999999999887654322211         1369999999999999999999976

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.26  E-value=5.2e-11  Score=59.65  Aligned_cols=69  Identities=20%  Similarity=0.234  Sum_probs=51.1

Q ss_pred             CCceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.+.|.+ +.|.|  .+.|.+.+..+   ......       .....|.|.+++.+|.|.|.|.+.|..+......
T Consensus        21 ~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~~-------~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~   89 (210)
T 1gsm_A           21 LGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQSD-------TGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTV   89 (210)
T ss_dssp             TTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEEE-------SSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEec-------CCccEEEECccCcccCceEEEEEEeCCCceEEEE
Confidence            58999999999 88888  99999854332   111100       1135799999999999999999999887765555


Q ss_pred             EE
Q psy11826         80 RT   81 (83)
Q Consensus        80 ~~   81 (83)
                      .|
T Consensus        90 ~l   91 (210)
T 1gsm_A           90 QL   91 (210)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.26  E-value=5.6e-12  Score=62.44  Aligned_cols=78  Identities=14%  Similarity=0.210  Sum_probs=54.5

Q ss_pred             CceEEEEeEeCccC--CCeEEEEeCCEEecccceEE-EEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          3 GRKITFFCMAEGFP--RPHITWTKDDIELTFHKYFQ-VHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         3 g~~~~~~C~~~~~~--~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      |+.+.|.|.+.+.+  .+.+.|+++|..+....... ............+.|.|..+...|.|.|.|.+.|..+.....+
T Consensus       126 g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          126 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             TTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             CCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence            78899999988853  47899999998876421111 0111112223346799999888899999999999887766554


Q ss_pred             E
Q psy11826         80 R   80 (83)
Q Consensus        80 ~   80 (83)
                      .
T Consensus       206 ~  206 (211)
T 3tv3_L          206 A  206 (211)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.26  E-value=4.5e-11  Score=59.68  Aligned_cols=75  Identities=19%  Similarity=0.374  Sum_probs=52.4

Q ss_pred             CCceEEEEeEeCcc-CCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.|.|.+.+. |.| .+.|++++..+.... ..... ..+.....+.|.|..+...| |.|.|.+.|..+......
T Consensus       141 ~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~-~~~~~-~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~  217 (222)
T 1q9r_B          141 TNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHT-FPAVL-QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  217 (222)
T ss_dssp             CSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE-EEEEE-ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             CCCcEEEEEEEccEECCCCEEEEecCCeEcceEe-ccccc-cCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEE
Confidence            57889999999885 888 999999886553221 11111 11122334578999988889 999999999988754433

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=99.26  E-value=4.2e-11  Score=53.58  Aligned_cols=72  Identities=22%  Similarity=0.373  Sum_probs=52.8

Q ss_pred             CCceEEEEeEeCc-cCCCeEEEEeCC----EEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAEG-FPRPHITWTKDD----IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~~~~w~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      .|+.+.+.|.+.+ .+.|.+.|-+-+    ..+....  +.+.  ..+......|.+..+..+|+|.|+|.++...|..+
T Consensus        25 ~G~~f~leCpv~yc~~rP~VtWcKln~~~c~~L~~~~--q~w~--E~~N~s~fvLhf~~V~~sDsGsYRCsAn~~sg~ie  100 (120)
T 2aw2_A           25 AGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQ--TSWK--EEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIE  100 (120)
T ss_dssp             TTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSC--EEEE--ECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cCCeEEEEccEEeccCCCceEEEecCCceEEECcccc--ccce--ecCCeeEEEEEEeeeeEcCCcceEEEeeCCCCcEE
Confidence            6899999999988 589999998744    4444332  2222  12233345799999999999999999999888654


Q ss_pred             e
Q psy11826         77 R   77 (83)
Q Consensus        77 ~   77 (83)
                      +
T Consensus       101 S  101 (120)
T 2aw2_A          101 S  101 (120)
T ss_dssp             C
T ss_pred             e
Confidence            4

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.25  E-value=9.3e-12  Score=62.07  Aligned_cols=77  Identities=16%  Similarity=0.260  Sum_probs=54.1

Q ss_pred             CCceEEEEeEeCcc-CCC-eEEEEeCCEEec--ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826          2 LGRKITFFCMAEGF-PRP-HITWTKDDIELT--FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~-~~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~   77 (83)
                      .|+.+.|.|.+.+. |.| .+.|++++....  ......  .  .......+.|.|..+...+ |.|.|.+.|..+....
T Consensus       139 ~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~--~--~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  213 (220)
T 1pz5_B          139 SGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVL--Q--SGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDL  213 (220)
T ss_dssp             CSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEE--E--TTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred             CCCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcCCcc--c--CCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEee
Confidence            57889999999887 888 999998775311  000000  0  0111234678998888766 9999999999998888


Q ss_pred             EEEEeC
Q psy11826         78 GFRTDY   83 (83)
Q Consensus        78 ~~~~~~   83 (83)
                      .+.+.|
T Consensus       214 ~~~~~~  219 (220)
T 1pz5_B          214 IKEISG  219 (220)
T ss_dssp             EEECCC
T ss_pred             eecCCC
Confidence            877654

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.25  E-value=3.5e-11  Score=58.42  Aligned_cols=65  Identities=20%  Similarity=0.395  Sum_probs=46.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccc--eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK--YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+....  .....    .    ...|.|..++.+|.|.|.|.+.+..+.
T Consensus        16 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~----~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~   82 (189)
T 2v5t_A           16 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML----A----NNNLQILNINKSDEGIYRCEGRVEARG   82 (189)
T ss_dssp             TTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEEC----T----TSCEEETTCCGGGCEEEEEEEEETTTT
T ss_pred             CCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEe----c----CCCEEEeeCCHhHCcEEEEEEEEcCCC
Confidence            58899999999899999999999887665322  12111    1    125999999999999999999887643

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.25  E-value=4.1e-11  Score=60.78  Aligned_cols=66  Identities=15%  Similarity=0.314  Sum_probs=52.2

Q ss_pred             CCceEEEEeEe-CccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.+.|.+ .+.|.+.+.|++++..+.....             ...|.|..++.+|.|.|.|.+.|..+.....+.
T Consensus        96 ~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~~-------------~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~  162 (262)
T 3rjd_A           96 EGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHW-------------NSNLTILKTNISHNGTYHCSGMGKHRYTSAGIS  162 (262)
T ss_dssp             TTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEEE-------------CCCEEESSCCGGGCEEEEEEEESSSEEEEECEE
T ss_pred             cCCeEEEEEEccCCCCCceEEEEECCccccccCC-------------CCeEEEEECChhhCEEEEEEEeCCCCccccceE
Confidence            58899999998 6778889999999887643211             236899999999999999999998876555443

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.24  E-value=1.6e-11  Score=60.52  Aligned_cols=63  Identities=22%  Similarity=0.401  Sum_probs=47.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecc------------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTF------------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+..            ..+....         ...|.|.+++.+|.|.|.|.+.
T Consensus        15 ~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~---------~~~L~i~~v~~~D~G~Y~C~~~   85 (212)
T 1f97_A           15 ENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS---------SSGITFSSVTRKDNGEYTCMVS   85 (212)
T ss_dssp             TTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE---------TTEEEESCCCGGGCEEEEEEEE
T ss_pred             cCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee---------ceeEEEcccCcccCeEEEEEEE
Confidence            589999999998889999999986644210            1111111         1479999999999999999999


Q ss_pred             CCCc
Q psy11826         70 NPFA   73 (83)
Q Consensus        70 ~~~g   73 (83)
                      +..|
T Consensus        86 ~~~g   89 (212)
T 1f97_A           86 EEGG   89 (212)
T ss_dssp             ETTS
T ss_pred             ccCC
Confidence            8766

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.24  E-value=7.1e-11  Score=55.39  Aligned_cols=78  Identities=12%  Similarity=0.184  Sum_probs=49.5

Q ss_pred             CCceEEEEeEeCccC---CCeEEEEeCCEE--ecc---------------cceEEEEEEecCCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGFP---RPHITWTKDDIE--LTF---------------HKYFQVHEWFLGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~---~~~~~w~~~~~~--~~~---------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   61 (83)
                      .|+.+.|.|...+.+   .+.+.|++.+..  +..               ..+.....  ........+|.|.+++.+|+
T Consensus        20 ~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~--~~~~~~~~sL~I~~v~~~D~   97 (139)
T 1pko_A           20 VGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLK--ESIGEGKVALRIQNVRFSDE   97 (139)
T ss_dssp             TTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEEC--TTGGGTEEEEEESSCCGGGC
T ss_pred             eCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEcc--ccccCCeEEEEEccCCHHHC
Confidence            589999999986544   368999987631  100               01111100  00011245799999999999


Q ss_pred             eEEEEEeeCCCcceeeEEEE
Q psy11826         62 GYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus        62 g~y~C~~~~~~g~~~~~~~~   81 (83)
                      |.|.|.+.+..+.....+.|
T Consensus        98 G~Y~C~v~~~~~~~~~~~~L  117 (139)
T 1pko_A           98 GGYTCFFRDHSYQEEAAVEL  117 (139)
T ss_dssp             EEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEcCCCceEEEEEE
Confidence            99999999887765555544

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.24  E-value=1.5e-11  Score=61.04  Aligned_cols=74  Identities=14%  Similarity=0.174  Sum_probs=50.3

Q ss_pred             CCCceEEEEeEeCccC---C-CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          1 MLGRKITFFCMAEGFP---R-PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~---~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .+|+.+.|.|.+.+.+   . +.+.|++++..+...................+.|.|.+++.+|.|.|.|.+.+..+.
T Consensus        16 ~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~   93 (207)
T 2vol_A           16 TITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFP   93 (207)
T ss_dssp             STTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCS
T ss_pred             ccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCC
Confidence            3689999999998874   2 489999998765432110000000111123457999999999999999999998774

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.24  E-value=1.2e-11  Score=62.76  Aligned_cols=73  Identities=14%  Similarity=0.248  Sum_probs=49.8

Q ss_pred             CceEEEEeEeCcc-CC-CeEEEEeCCEEecccceEEEEEEe--cCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          3 GRKITFFCMAEGF-PR-PHITWTKDDIELTFHKYFQVHEWF--LGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         3 g~~~~~~C~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      |+.+.|.|.+.+. |. +.+.|++++..+............  +......+.|.|..+..+|.|.|.|.+.|.....
T Consensus       169 g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          169 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             CCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            6689999999885 43 359999999877654111100000  0112235689999999999999999999987653

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.24  E-value=3.3e-11  Score=65.39  Aligned_cols=74  Identities=12%  Similarity=0.188  Sum_probs=53.2

Q ss_pred             CCceEEEEeEeCccC----CCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFP----RPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+.+    .+.+.|++++..+...................+.|.|..+..+|.|.|.|.+.|..+..
T Consensus       254 ~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~  331 (444)
T 1igt_B          254 ISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA  331 (444)
T ss_dssp             TTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSS
T ss_pred             cCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCC
Confidence            588999999998874    35899999998775432111111111122345689999999999999999999987755

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.24  E-value=1.8e-11  Score=65.06  Aligned_cols=69  Identities=32%  Similarity=0.415  Sum_probs=53.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+....           ......|.|..++.+|.|.|.|.+.|..|.......|
T Consensus       221 ~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~-----------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  289 (382)
T 1cs6_A          221 TGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW-----------LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI  289 (382)
T ss_dssp             TTCCEEEECEEEEESCCEEEEEECCSCCSCCC-----------SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCeEEEEEEEccCCCCEEEEEECCcccccEE-----------ecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence            58889999999999999999999876554311           0112469999999999999999999988876555443

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.24  E-value=2.3e-12  Score=67.67  Aligned_cols=80  Identities=23%  Similarity=0.365  Sum_probs=56.5

Q ss_pred             CCceEEEEeEe---CccC-CCeEEEEeCCEEecccc---eEE----EEEEecCCCeEEEEEEEccCCCCCC-eEEEEEee
Q psy11826          2 LGRKITFFCMA---EGFP-RPHITWTKDDIELTFHK---YFQ----VHEWFLGNNTIKSKMEIDPATQKDA-GYYECVAD   69 (83)
Q Consensus         2 ~g~~~~~~C~~---~~~~-~~~~~w~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~l~i~~~~~~~~-g~y~C~~~   69 (83)
                      .|+.+.|.|.+   .+.| .+.+.|++++..+....   ...    ............+.|.|..+..+|. |.|.|.+.
T Consensus       240 ~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~  319 (339)
T 3o4o_C          240 LGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVH  319 (339)
T ss_dssp             CCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEE
T ss_pred             cCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEE
Confidence            58889999999   8999 78899999887654211   000    0000112223345799999999997 99999999


Q ss_pred             CCCcceeeEEEE
Q psy11826         70 NPFAIDRRGFRT   81 (83)
Q Consensus        70 ~~~g~~~~~~~~   81 (83)
                      |..|.....+.+
T Consensus       320 N~~G~~~~~~~~  331 (339)
T 3o4o_C          320 NTLSFQTLRTTV  331 (339)
T ss_dssp             ETTEEECCBCCC
T ss_pred             eccCceEEEEEh
Confidence            999988766544

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.24  E-value=8.9e-13  Score=65.34  Aligned_cols=75  Identities=15%  Similarity=0.196  Sum_probs=51.6

Q ss_pred             CceEEEEeEeCcc-CC-CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826          3 GRKITFFCMAEGF-PR-PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         3 g~~~~~~C~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~   77 (83)
                      |+.+.|.|.+.+. |. |.+.|++++..+...................+.|.|..+..+|.|.|.|.+.|..+....
T Consensus       128 g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  204 (212)
T 1nfd_E          128 TNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEK  204 (212)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred             CCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEEE
Confidence            6789999999886 54 799999999887643211000000011222456899999999999999999998776443

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.23  E-value=1.2e-10  Score=58.17  Aligned_cols=70  Identities=17%  Similarity=0.280  Sum_probs=47.9

Q ss_pred             CCceE-EEEeEe-CccCCCeEEEEeCCEEecccc----eEEEEEEec----CCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKI-TFFCMA-EGFPRPHITWTKDDIELTFHK----YFQVHEWFL----GNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~-~~~C~~-~~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.+ .+.|.+ .+.|.|.+.|++++..+....    ...+.....    ......+.|.+......|.|.|.|.+.|.
T Consensus       132 ~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          132 EDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             CCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             CCCceEEEEEEeECcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            46666 999998 889999999999998876543    333222111    11222356887644444599999999994

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.23  E-value=2.8e-11  Score=60.71  Aligned_cols=73  Identities=12%  Similarity=0.246  Sum_probs=50.4

Q ss_pred             CceEEEEeEeCcc-C-CCeEEEEeCCEEecccc-eE-EEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          3 GRKITFFCMAEGF-P-RPHITWTKDDIELTFHK-YF-QVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         3 g~~~~~~C~~~~~-~-~~~~~w~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      |+.+.+.|.+.+. | .+.+.|++++..+.... .. .............+.|.+.....+|.|.|.|.+.|.....
T Consensus       150 g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  226 (237)
T 3sob_L          150 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  226 (237)
T ss_dssp             HTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             CCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCC
Confidence            6679999998874 4 57999999998876432 10 0000001122335678999999999999999999987543

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.23  E-value=4.8e-11  Score=59.09  Aligned_cols=70  Identities=19%  Similarity=0.321  Sum_probs=48.8

Q ss_pred             CCceEEEEeEeCcc----CCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc--e
Q psy11826          2 LGRKITFFCMAEGF----PRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI--D   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~--~   75 (83)
                      .|+.+.+.|.+.+.    |.|.+.|++++.......           ....+.|.|..+...|.|.|.|.+.|..+.  .
T Consensus       137 ~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~~-----------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~  205 (214)
T 2zg1_A          137 SGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE-----------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTT  205 (214)
T ss_dssp             TTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCSS-----------CCCSSEEEECCCTTCCSCEEEEEEECC----CC
T ss_pred             CCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCCC-----------ceeEEEEEEecccHHcCcEEEEEEEeCCCCcce
Confidence            58899999998764    789999999875432111           111347889999888999999999997644  4


Q ss_pred             eeEEEEe
Q psy11826         76 RRGFRTD   82 (83)
Q Consensus        76 ~~~~~~~   82 (83)
                      ...+.|.
T Consensus       206 ~~~v~l~  212 (214)
T 2zg1_A          206 ERTVQLN  212 (214)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEE
Confidence            4455443

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.23  E-value=1.3e-10  Score=64.18  Aligned_cols=76  Identities=14%  Similarity=0.326  Sum_probs=53.1

Q ss_pred             CCceEEEEeEeCcc-CCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.|.|.+.+. |.| .+.|++++..+........ ....+.....+.|.|..+...| |.|.|.+.|..|......
T Consensus       233 ~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~-~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~  310 (523)
T 2rcj_C          233 SGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK  310 (523)
T ss_pred             cCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcE-ecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEE
Confidence            58899999999886 777 7999999876432110000 0011122335689999999999 999999999988754443

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.23  E-value=2.1e-10  Score=56.45  Aligned_cols=61  Identities=13%  Similarity=0.260  Sum_probs=44.8

Q ss_pred             eEEEEeEeCcc-CCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCC-CCCeEEEEEeeCCCcceeeEEEE
Q psy11826          5 KITFFCMAEGF-PRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ-KDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         5 ~~~~~C~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .+.|.|.+.+. |.|.+.|++++..+....                .|.|..... +|.|.|.|.+.|..|.....+.+
T Consensus       126 ~v~L~C~~~g~~p~p~i~W~~~g~~l~~~~----------------~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~~  188 (193)
T 2if7_A          126 ELHLTCSVEDADDNVSFRWEALGNTLSSQP----------------NLTVSWDPRISSEQDYTCIAENAVSNLSFSVSA  188 (193)
T ss_dssp             EEEEEEEEESCCTTCEEEEEETTEEEESSS----------------EEEEEECTTTCSCCEEEEEEEETTEEEEEEEEH
T ss_pred             eEEEEEEEecCCCceEEEEEeCCEEcCCCC----------------eEEEEeccCcCCCCcEEEEEECCCCcccccccc
Confidence            79999999885 578999999987653222                244433333 48999999999999987666543

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.22  E-value=9.9e-11  Score=61.30  Aligned_cols=73  Identities=15%  Similarity=0.144  Sum_probs=50.3

Q ss_pred             CCceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.|+|  .+.|++++..+...................+.|.|......|.|.|.|.+.|..+.
T Consensus       131 ~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~  205 (327)
T 2wng_A          131 PQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQ  205 (327)
T ss_dssp             TTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSC
T ss_pred             CCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccC
Confidence            58899999999988776  89999999887654321110001112233456777766666679999999997665

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.22  E-value=1.9e-11  Score=62.08  Aligned_cols=73  Identities=12%  Similarity=0.136  Sum_probs=50.9

Q ss_pred             CCceEEEEeEeCcc---CCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGF---PRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~---~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.   |.+ .+.|++++..+...................+.|.|..++.+|.|.|.|.+.+..+.
T Consensus        31 ~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~  107 (239)
T 1i1c_A           31 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFP  107 (239)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSS
T ss_pred             cCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCC
Confidence            68999999998877   766 89999988655432110000111112234567999999999999999999998774

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.22  E-value=3.4e-11  Score=64.08  Aligned_cols=71  Identities=25%  Similarity=0.462  Sum_probs=52.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEec------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELT------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++....      .......         ....|.|..++.+|.|.|.|.+.|..|..
T Consensus       226 ~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  296 (388)
T 2v5m_A          226 VAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ---------VSGTLIIKDAVVEDSGKYLCVVNNSVGGE  296 (388)
T ss_dssp             TTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEE---------ETTEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred             eCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceec---------ccCEEEECcCCHHHCeEEEEEEecCCCce
Confidence            47889999999999999999998643222      1111110         12379999999999999999999999876


Q ss_pred             eeEEEE
Q psy11826         76 RRGFRT   81 (83)
Q Consensus        76 ~~~~~~   81 (83)
                      .....|
T Consensus       297 ~~~~~l  302 (388)
T 2v5m_A          297 SVETVL  302 (388)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            655544

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.22  E-value=7.4e-11  Score=66.42  Aligned_cols=59  Identities=24%  Similarity=0.425  Sum_probs=50.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      .|+.+.|.|.+.+.|.|.+.|+++|..+...                ..|.|..+..+|.|.|.|.+.|..|...
T Consensus       395 ~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~----------------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  453 (642)
T 1e07_A          395 PGVNLSLSCHAASNPPAQYSWLIDGNIQQHT----------------QELFISNITEKNSGLYTCQANNSASGHS  453 (642)
T ss_pred             CCCcEEEEEEcCccCCCeEEEEECCEEcCCC----------------ceEEEccCChhhCeEEEEEEEcCCCCCc
Confidence            5888999999999999999999999766532                2588899999999999999999887543

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.22  E-value=3.5e-11  Score=59.91  Aligned_cols=76  Identities=18%  Similarity=0.407  Sum_probs=49.4

Q ss_pred             CCceEEEEeEeCc-cCCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEG-FPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.|.|.+.+ .|.| .+.|++++..+.........  ........+.|.|.. ...|.|.|.|.+.|..+......
T Consensus       138 ~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~--~~~~~~~~s~L~i~~-~~~d~g~Y~C~a~n~~~~~~~~~  214 (219)
T 1c1e_H          138 TNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVL--QSDLYTLSSSVTVPS-SPRPSETVTCNVAHPASSTKVDK  214 (219)
T ss_dssp             CSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEE--SSSCEEEEEEEEEES-SSTTTSCCEEEEEEGGGTEEEEE
T ss_pred             cCCeEEEEEEcccccCCCeEEEEEeCCcccceEecCCcc--cCCeEEEEEEEEEec-ccCCCCEEEEEEEeCCCCccEEE
Confidence            5889999999988 8888 99999988654211100000  011122345788844 44466999999999888755444


Q ss_pred             E
Q psy11826         80 R   80 (83)
Q Consensus        80 ~   80 (83)
                      .
T Consensus       215 ~  215 (219)
T 1c1e_H          215 K  215 (219)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.21  E-value=4.3e-11  Score=58.39  Aligned_cols=56  Identities=18%  Similarity=0.153  Sum_probs=45.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+ +.+.+.|++++.....           .    ...|.|.+++.+|+|.|.|.+.|..|
T Consensus        21 ~G~~v~L~C~~~~-~~~~~~W~k~g~~~~~-----------~----~~~L~i~~v~~~D~G~Y~C~a~n~~g   76 (184)
T 2gi7_A           21 LEKPVTLRCQGPP-GVDLYRLEKLSSSRYQ-----------D----QAVLFIPAMKRSLAGRYRCSYQNGSL   76 (184)
T ss_dssp             TTCCEEEEEECST-TCSEEEEEETTTCCEE-----------S----SSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCCcEEEEEeCCC-CCCEEEEEECCccccC-----------c----ccEEEECcCChhhCceEEEEEEcCCC
Confidence            5899999999877 7789999998764100           0    23699999999999999999998665

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.21  E-value=2.1e-10  Score=66.08  Aligned_cols=76  Identities=21%  Similarity=0.306  Sum_probs=57.0

Q ss_pred             CCceEEEEeEeCccCCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.+.| .+.|++++..+...........    ....+.|.|..+..+|.|.|.|.+.|..|.......
T Consensus       633 ~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  708 (816)
T 3dmk_A          633 VGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRV----GRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTP  708 (816)
T ss_dssp             SSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEE----TTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             CCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEc----CCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEE
Confidence            58899999998766554 8999999988765433322211    112457999999999999999999999988766554


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus       709 l  709 (816)
T 3dmk_A          709 L  709 (816)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.21  E-value=4.7e-11  Score=59.24  Aligned_cols=73  Identities=16%  Similarity=0.218  Sum_probs=48.8

Q ss_pred             CCceEEEEeEeCcc-CC-CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGF-PR-PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+. |. +.+.|+++|..+............+......+.|.+......|.|.|.|.+.|....
T Consensus       123 ~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          123 AKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             cCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence            37889999999885 44 389999999877542211111111122334556777777777899999999987643

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.21  E-value=1.5e-11  Score=62.79  Aligned_cols=63  Identities=22%  Similarity=0.183  Sum_probs=48.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+....                .+  ..++.+|.|.|.|.+.|..|.....+.|
T Consensus       199 ~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~g----------------~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  260 (265)
T 2oz4_A          199 ENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG----------------ES--VTVTRDLEGTYLCRARSTQGEVTREVTV  260 (265)
T ss_dssp             TTCEECCCCCCEEESCCEEEEEETTTEECCTT----------------SC--EECCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCeEEEEeECccCCCCeEEEEECCcccCCCC----------------cE--EEeehhhCeEEEEEEECCCCcEEEEEEE
Confidence            57889999999999999999999887222111                11  1377899999999999999988776655


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       261 ~  261 (265)
T 2oz4_A          261 N  261 (265)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.21  E-value=2.3e-11  Score=60.04  Aligned_cols=74  Identities=26%  Similarity=0.360  Sum_probs=50.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceE--EEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYF--QVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+......  ........+......+.+.+++..|.|.|.|.+.+..|..
T Consensus        23 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~   98 (212)
T 2v9r_A           23 KGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA   98 (212)
T ss_dssp             TTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTEEE
T ss_pred             CCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCCCce
Confidence            6899999999999999999999999877643210  0000001111112235556778999999999999887754

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.20  E-value=1.5e-11  Score=61.73  Aligned_cols=77  Identities=14%  Similarity=0.214  Sum_probs=52.8

Q ss_pred             CceEEEEeEeCccCC--CeEEEEeCCEEecccceEE-EEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          3 GRKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQ-VHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         3 g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      |+.+.+.|.+.+.++  +.+.|++++..+....... ............+.|.|..+..+|.|.|.|.+.|..+.....+
T Consensus       150 g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  229 (234)
T 2j6e_L          150 ANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  229 (234)
T ss_dssp             TSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred             CCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence            678899999988644  3899999998876432100 0000011123346789999999999999999999887655544

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.20  E-value=3.8e-10  Score=56.54  Aligned_cols=77  Identities=13%  Similarity=0.281  Sum_probs=51.4

Q ss_pred             CCceEEEEeEeCcc-CCC-eEEEEe-CCEEecccceEEEEEEecCCCeEEEEEEEccCCC--CCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAEGF-PRP-HITWTK-DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ--KDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~-~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~~~g~y~C~~~~~~g~~~   76 (83)
                      .|+.+.|.|.+.+. |.| .+.|++ ++..+......... .........+.|.|.....  .|.|.|.|.+.|..+...
T Consensus       140 ~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~-~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~  218 (223)
T 1dee_B          140 PSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSV-LRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKE  218 (223)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCE-EETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEE
T ss_pred             CCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCcc-ccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCc
Confidence            57889999999886 777 899999 88766531000000 0011122345688877765  778999999999988765


Q ss_pred             eEE
Q psy11826         77 RGF   79 (83)
Q Consensus        77 ~~~   79 (83)
                      ...
T Consensus       219 ~~~  221 (223)
T 1dee_B          219 KDV  221 (223)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            543

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.20  E-value=5.3e-11  Score=58.50  Aligned_cols=65  Identities=18%  Similarity=0.242  Sum_probs=48.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+.|. .+.|++++..+......      .........|.|.+++.+|+|.|.|.+.|..|
T Consensus        18 ~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~------~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   82 (196)
T 2d3v_A           18 RGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQN------PLEPKNKARFSIPSMTEHHAGRYRCYYYSPAG   82 (196)
T ss_dssp             TTCCEEEEEECCTTCC-EEEEEETTCSSCSEEEC------CCSSTTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCCeEEEEEeCCCCCc-EEEEEECCCCCCccccc------ccCCccccEEEeccCChhHCeEEEEEEeCCCC
Confidence            5899999999887765 89999998765432100      00111245799999999999999999988765

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.19  E-value=1.6e-11  Score=66.59  Aligned_cols=63  Identities=22%  Similarity=0.194  Sum_probs=49.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+.....               .+   .++.+|+|.|.|.+.|..|.....+.|
T Consensus       384 ~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g~---------------~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l  445 (450)
T 1z7z_I          384 ENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE---------------SV---TVTRDLEGTYLCRARSTQGEVTREVTV  445 (450)
T ss_dssp             TTCEECCCCCCEEESCCEEEEEETTTEECCTTS---------------CE---ECCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCeEEEEEecccCCCCcEEEEECCcccCCCCC---------------eE---eEehhhCeEEEEEEEeCCCceeEEEEE
Confidence            578899999999999999999999873332110               12   477899999999999999988777665


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus       446 ~  446 (450)
T 1z7z_I          446 N  446 (450)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.19  E-value=5.8e-11  Score=53.94  Aligned_cols=80  Identities=18%  Similarity=0.261  Sum_probs=48.1

Q ss_pred             CCceEEEEeEe-CccCCCe----EEEEeCCEEecc-------------cceEEEEEEecCCCeEEEEEEEccCCCCCCeE
Q psy11826          2 LGRKITFFCMA-EGFPRPH----ITWTKDDIELTF-------------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         2 ~g~~~~~~C~~-~~~~~~~----~~w~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   63 (83)
                      .|+.+.|.|.. .+.+.+.    +.|++.+.....             ..+...............+|.|.+++.+|+|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~   93 (118)
T 3udw_C           14 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGN   93 (118)
T ss_dssp             TTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCCGGGCEE
T ss_pred             eCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecChHHCeE
Confidence            58999999998 4454443    899987422110             00111000000000014579999999999999


Q ss_pred             EEEEeeC-CCcceeeEEEE
Q psy11826         64 YECVADN-PFAIDRRGFRT   81 (83)
Q Consensus        64 y~C~~~~-~~g~~~~~~~~   81 (83)
                      |.|.+.+ ..+.......|
T Consensus        94 Y~C~v~~~~~~~~~~~~~L  112 (118)
T 3udw_C           94 YTCLFVTFPQGSRSVDIWL  112 (118)
T ss_dssp             EEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEECCCCCccceEEE
Confidence            9999988 66655544444

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.19  E-value=9.7e-12  Score=65.29  Aligned_cols=73  Identities=23%  Similarity=0.358  Sum_probs=54.3

Q ss_pred             CCceEEEEeEeC-------ccCCCeEEEEeCCEEe--cccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          2 LGRKITFFCMAE-------GFPRPHITWTKDDIEL--TFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~-------~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .|+.+.|.|.+.       +.|.+.+.|++++..+  ......++..       ....|.|.+++.+|.|.|.|.+.|..
T Consensus        32 ~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~D~G~Y~C~~~n~~  104 (339)
T 3o4o_C           32 EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA-------QDGALWLLPALQEDSGTYVCTTRNAS  104 (339)
T ss_dssp             TTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEE-------ETTEEEESSBCTTCCEEEECCEEETT
T ss_pred             CCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEe-------eCCeEEECCCCcccCEEEEEEEECCc
Confidence            589999999987       8889999999988764  2221111111       02379999999999999999999988


Q ss_pred             cceeeEEEE
Q psy11826         73 AIDRRGFRT   81 (83)
Q Consensus        73 g~~~~~~~~   81 (83)
                      |.....+.|
T Consensus       105 g~~~~~~~l  113 (339)
T 3o4o_C          105 YCDKMSIEL  113 (339)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEEEEEEE
Confidence            766555544

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.19  E-value=3.7e-11  Score=63.74  Aligned_cols=61  Identities=10%  Similarity=0.084  Sum_probs=48.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~   77 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+...               ...|.|.+++.+|.|.|.|.+.+..+....
T Consensus       110 ~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~  170 (363)
T 1wio_A          110 QGQSLTLTLESPPGSSPSVQCRSPRGKNIQG---------------GKTLSVSQLELQDSGTWTCTVLQNQKKVEF  170 (363)
T ss_dssp             SBSCEEEEEECCTTCCCCEEEECSSSCEEEE---------------SSEEEECSBCGGGCEECEEEEEETTEEEEE
T ss_pred             cCCCEEEEEEcCCCCCCeEEEEcCCCccccc---------------ceEEEEeeCChhcCCEEEEEEecCCCeEEE
Confidence            5889999999989999999999987533111               247999999999999999999887655443

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.19  E-value=8.7e-11  Score=57.30  Aligned_cols=62  Identities=15%  Similarity=0.162  Sum_probs=46.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+.+ +.+.|++++..+......         ......|.|..++.+|.|.|.|.+.|..+
T Consensus       107 ~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~~---------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          107 SGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPE---------RWYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             CTTCEEEEEECSSCC-CEEEEEECCCCTTSCCCC---------EEEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             CCCcEEEEEEcCCCC-cEEEEEECCCcCcceecC---------CCceEEEEEccCCccCCeEEEEEEEeCCC
Confidence            588999999976554 689999998766542111         11134688899999999999999999754

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.19  E-value=3.4e-10  Score=56.02  Aligned_cols=67  Identities=18%  Similarity=0.292  Sum_probs=47.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CEEec------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DIELT------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.+.|.|.+.+.+.+.+.|++.  +....            ...++....     ......|.|.+++.+|+|.|.|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~   88 (213)
T 3mj8_L           14 LGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN-----SGNMATLTISKAQAGDEADYYCQ   88 (213)
T ss_dssp             TTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe-----cCCEEEEEECCCChhhCEEEEEE
Confidence            689999999999999999999982  21110            011222111     11245799999999999999999


Q ss_pred             eeCCCc
Q psy11826         68 ADNPFA   73 (83)
Q Consensus        68 ~~~~~g   73 (83)
                      +.+..+
T Consensus        89 ~~~~~~   94 (213)
T 3mj8_L           89 SWDGTN   94 (213)
T ss_dssp             EEETTT
T ss_pred             eccCCc
Confidence            998776

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.18  E-value=2.6e-10  Score=57.72  Aligned_cols=73  Identities=16%  Similarity=0.379  Sum_probs=46.2

Q ss_pred             CceEEEEeEeCc-cCCC-eEEEEeCCEEeccc------ce-EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEG-FPRP-HITWTKDDIELTFH------KY-FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~-~~~~-~~~w~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      |+.+.|.|.+.+ .|.| .+.|++++..+...      .. ..............+.|.+......|.|.|.|.+.|..+
T Consensus       133 ~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~  212 (248)
T 3pv7_A          133 ENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASL  212 (248)
T ss_dssp             ---CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTC
T ss_pred             CCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCC
Confidence            566779999988 7888 99999988543321      10 111111112233456788888888899999999999877


Q ss_pred             ce
Q psy11826         74 ID   75 (83)
Q Consensus        74 ~~   75 (83)
                      ..
T Consensus       213 ~~  214 (248)
T 3pv7_A          213 HT  214 (248)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=99.18  E-value=5e-10  Score=50.80  Aligned_cols=66  Identities=18%  Similarity=0.353  Sum_probs=45.0

Q ss_pred             CCceEEEEeEeCcc--CCCeEEEEeC--CE----EecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGF--PRPHITWTKD--DI----ELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~--~~~~~~w~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      +|+.+.|.|...+.  +.+.+.|++.  +.    .+....++.....   .......|.|.+++.+|+|.|.|.+.+
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~~~~   87 (111)
T 2ywz_A           14 TGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVD---KGSKSFSLRISDLRVEDSGTYKCQADY   87 (111)
T ss_dssp             TTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCSBTTEEEEEE---TTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEeeEeCCCEEEEEe---CCCCEEEEEECCCChhcCEEEEEEEEc
Confidence            68999999998765  5678999974  22    1111222322111   111245799999999999999999987

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.18  E-value=5.2e-10  Score=55.36  Aligned_cols=68  Identities=16%  Similarity=0.322  Sum_probs=47.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--EEe----------c--ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--IEL----------T--FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~~~----------~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.+.|.|.+.+.|.+.+.|+++.  ..+          .  ...++....     ......|.|.+++.+|.|.|.|.
T Consensus        15 ~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~   89 (213)
T 3d9a_L           15 PGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG-----SGTDFTLSINSVETEDFGMYFCQ   89 (213)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc-----CCCEEEEEECCCChhhCEEEEEe
Confidence            6899999999999988999998742  111          0  011222111     11134799999999999999999


Q ss_pred             eeCCCcc
Q psy11826         68 ADNPFAI   74 (83)
Q Consensus        68 ~~~~~g~   74 (83)
                      +.+..+.
T Consensus        90 ~~~~~~~   96 (213)
T 3d9a_L           90 QSNSWPY   96 (213)
T ss_dssp             ECSSSSC
T ss_pred             eecCCcc
Confidence            9987654

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=99.18  E-value=2.3e-10  Score=51.53  Aligned_cols=62  Identities=15%  Similarity=0.187  Sum_probs=45.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .|++++|.|...+. .+.+.|++++..+....        .........|.|..++.+|+|.|.|.+.+..
T Consensus        18 ~G~~VtL~C~~~~~-~~~~~w~k~g~~~~~~~--------~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~~   79 (105)
T 2vsd_A           18 LGDTVTLRCHLPRM-AAWVQLWLNGTLRFDKE--------KDKEQDAAEFSFAVTNLEDAGTYQCRYQVSE   79 (105)
T ss_dssp             TTCEEEEEEECCSS-CEEEEEEETTEEEEEEE--------ECTTCSEEEEEEECCSGGGCEEEEEEEEEET
T ss_pred             cCCCEEEEEEcCCC-CcEEEEEECCccceeee--------ccCCCCEEEEEECCCCHHHCeEEEEEEEcCC
Confidence            58999999997654 35678999986543210        0112224579999999999999999998753

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.17  E-value=7.7e-11  Score=60.09  Aligned_cols=80  Identities=11%  Similarity=0.137  Sum_probs=52.0

Q ss_pred             CCceEEEEeEe---CccCCCeEEEEeC-CEEecccceEEEE-------EE-----------ecCCCeEEEEEEEccCCCC
Q psy11826          2 LGRKITFFCMA---EGFPRPHITWTKD-DIELTFHKYFQVH-------EW-----------FLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         2 ~g~~~~~~C~~---~~~~~~~~~w~~~-~~~~~~~~~~~~~-------~~-----------~~~~~~~~~~l~i~~~~~~   59 (83)
                      .|+.+.|.|.+   .+.|.|.+.|+++ +............       ..           ..........|.|..++.+
T Consensus       132 ~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~  211 (268)
T 3mj6_A          132 VGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKES  211 (268)
T ss_dssp             TTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGG
T ss_pred             cCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChh
Confidence            58889999998   6779999999984 3211111000000       00           0000012347999999999


Q ss_pred             CCeEEEEEeeCCCcceeeEEEE
Q psy11826         60 DAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus        60 ~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      |.|.|.|.+.|..|.....+.|
T Consensus       212 D~G~Y~C~a~n~~g~~~~~~~l  233 (268)
T 3mj6_A          212 DQGIYTCSIYVGKLESRKTIVL  233 (268)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEE
T ss_pred             hCeEEEEEEEcCCceEEEEEEE
Confidence            9999999999988877666554

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.17  E-value=1.1e-10  Score=60.67  Aligned_cols=65  Identities=22%  Similarity=0.358  Sum_probs=51.3

Q ss_pred             CCceEEEEeEe------CccCCCeEEEEeCCEEecccc-eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEee-CCCc
Q psy11826          2 LGRKITFFCMA------EGFPRPHITWTKDDIELTFHK-YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD-NPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~------~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~-~~~g   73 (83)
                      .|+.+.|.|.+      .+.|.|.+.|++++..+.... .....         ...|.|.+++.+|.|.|.|.+. |..|
T Consensus       117 ~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a~~n~~g  187 (315)
T 1itb_B          117 VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV---------KDRLIVMNVAEKHRGNYTCHASYTYLG  187 (315)
T ss_dssp             TTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEE---------TTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             cCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeec---------CceEEEEeceehhCcEEEEEEEcCCCC
Confidence            47889999998      788999999999998875432 11110         2379999999999999999999 6777


Q ss_pred             ce
Q psy11826         74 ID   75 (83)
Q Consensus        74 ~~   75 (83)
                      ..
T Consensus       188 ~~  189 (315)
T 1itb_B          188 KQ  189 (315)
T ss_dssp             EE
T ss_pred             cE
Confidence            65

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.17  E-value=4.4e-11  Score=59.28  Aligned_cols=74  Identities=19%  Similarity=0.396  Sum_probs=50.2

Q ss_pred             CCceEEEEeEeCcc-CCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeE
Q psy11826          2 LGRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG   78 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~   78 (83)
                      .|+.+.|.|.+.+. |.| .+.|++++..+.........  ........+.|.|..+...+ |.|.|.+.|..+.....
T Consensus       132 ~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          132 TNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVL--QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             CSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEE--ETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             cCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCcc--CCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence            57889999999886 888 99999988653211100000  01112234578998888766 99999999998876443

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.17  E-value=3.6e-10  Score=56.83  Aligned_cols=68  Identities=18%  Similarity=0.190  Sum_probs=46.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCE-----Eec---------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDI-----ELT---------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++.     .+.         ...++....   ........|.|.+++.+|+|.|.|.
T Consensus       141 ~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~  217 (238)
T 2p1y_A          141 EGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFF---NKREKKLSLHIADSQPGDSATYFCA  217 (238)
T ss_dssp             TTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEE---ETTTTEEEEEETTCCGGGCEEEEEE
T ss_pred             CCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEe---cCCCCeEEEEEcCCCHHHCEEEEEE
Confidence            58899999999999999999998531     110         011111110   0111235799999999999999999


Q ss_pred             eeCCC
Q psy11826         68 ADNPF   72 (83)
Q Consensus        68 ~~~~~   72 (83)
                      +.|..
T Consensus       218 a~n~~  222 (238)
T 2p1y_A          218 AIDTN  222 (238)
T ss_dssp             EEETT
T ss_pred             EeeCC
Confidence            99873

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.17  E-value=4.9e-11  Score=59.63  Aligned_cols=73  Identities=15%  Similarity=0.188  Sum_probs=48.2

Q ss_pred             CCceEEEEeEeCc-cCCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEG-FPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.| .|.+ .+.|++++..+............+......+.|.+......|.|.|.|.+.|....
T Consensus       131 ~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~  205 (218)
T 2rgs_A          131 SRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK  205 (218)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred             cCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence            4788999999998 5665 89999999877532211111111122334456777666666789999999997654

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.17  E-value=2.7e-10  Score=61.79  Aligned_cols=65  Identities=12%  Similarity=0.230  Sum_probs=51.1

Q ss_pred             CCceEEEEeEeCccCCC---eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRP---HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.|++   .+.|++++..+.....        ........|.|..+...|.|.|.|.+.|..|.
T Consensus       100 ~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~--------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  167 (450)
T 1z7z_I          100 VGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA--------VGEPAEVTTTVLVRRDHHGANFSCRTELDLRP  167 (450)
T ss_dssp             TTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC--------CTTTEEEEEEEECCSSCSSCEEEEEEEEECGG
T ss_pred             eCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccc--------cccccceEEEEEeeccccCceEEEEEEcccCC
Confidence            58999999999998888   8999999987653221        01122357999999999999999999988664

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.16  E-value=2.4e-10  Score=59.91  Aligned_cols=74  Identities=15%  Similarity=0.227  Sum_probs=51.0

Q ss_pred             ceEEEEeEeCcc-C-CCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826          4 RKITFFCMAEGF-P-RPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         4 ~~~~~~C~~~~~-~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~   77 (83)
                      +.+.|.|.+.+. | .+.+.|+++|..+...................+.|.|......|.|.|.|.+.|..+....
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~  100 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFED  100 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEE
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcce
Confidence            589999999886 4 4689999999888754321111111222233457888888778999999999988765543

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.16  E-value=7.9e-11  Score=58.33  Aligned_cols=73  Identities=14%  Similarity=0.181  Sum_probs=49.3

Q ss_pred             CCceEEEEeEeCccCC--CeEEEEeCCEEecccc-eEE-EEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPR--PHITWTKDDIELTFHK-YFQ-VHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.++  +.+.|++++..+.... ... ............+.|.+......|.|.|.|.+.|....
T Consensus       126 ~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~  202 (213)
T 3r06_A          126 GTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST  202 (213)
T ss_dssp             TTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred             CCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence            3667999999988654  3799999998876531 110 00000112233457888888888999999999987644

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.16  E-value=2.9e-10  Score=58.46  Aligned_cols=68  Identities=28%  Similarity=0.491  Sum_probs=51.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe-CCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK-DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+.|. .+.|++ ++..+....+......  .   ..+.|.|.+++.+|.|.|.|.+.+..|..
T Consensus        18 ~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~--~---~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~   86 (291)
T 2wim_A           18 VGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKE--G---VRSRLTIYNANIEDAGIYRCQATDAKGQT   86 (291)
T ss_dssp             TTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEE--T---TEEEEEECSCCGGGCEEEEEEEECSSSCE
T ss_pred             CCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecC--C---CEEEEEEccCCcccCEEEEEEEecccCce
Confidence            5889999999988775 899998 6666654444333221  1   13579999999999999999999988765

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.16  E-value=4.3e-10  Score=54.54  Aligned_cols=58  Identities=24%  Similarity=0.379  Sum_probs=43.4

Q ss_pred             CCceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      +|+.+.|.|.+.+.|.|  .+.|++++..+.......          ....|.+.  +.+|.|.|.|.+.+.
T Consensus        12 ~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~----------~~~~l~i~--~~~d~G~Y~C~~~n~   71 (184)
T 3b5h_A           12 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG----------QKTEFKVD--SDDQWGEYSCVFLPE   71 (184)
T ss_dssp             ETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC----------SEEEEEEC--GGGCCEEEEEEEEST
T ss_pred             cCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccC----------CcEEEEEe--chhhCeEEEEEEECC
Confidence            58999999998887777  899999998776443111          12345555  588999999999973

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=99.16  E-value=2e-10  Score=52.18  Aligned_cols=68  Identities=18%  Similarity=0.280  Sum_probs=45.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--EEec----------ccceEEEEEEecCC-CeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--IELT----------FHKYFQVHEWFLGN-NTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~~~~----------~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      .|+.+.|.|.+.+.+ +.+.|++..  ....          ...+....   ... .....+|.|.+++.+|+|.|.|.+
T Consensus        15 ~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~---~~~~~~~~~~L~I~~v~~~DsG~Y~C~~   90 (113)
T 1h5b_A           15 EGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSA---FDSERARYSTLHIRDAQLEDSGTYFCAA   90 (113)
T ss_dssp             TTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEE---CCSSSSSEEEEEECSCCGGGCEEEEEEE
T ss_pred             cCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEE---EccCCCCEEEEEECCCChhhCEEEEEEE
Confidence            589999999987654 689998743  1110          01111111   111 233557999999999999999999


Q ss_pred             eCCCc
Q psy11826         69 DNPFA   73 (83)
Q Consensus        69 ~~~~g   73 (83)
                      .+..+
T Consensus        91 ~n~~~   95 (113)
T 1h5b_A           91 EASSG   95 (113)
T ss_dssp             ECSSS
T ss_pred             ecCCC
Confidence            98654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.15  E-value=3.1e-11  Score=59.05  Aligned_cols=69  Identities=16%  Similarity=0.343  Sum_probs=49.7

Q ss_pred             CCceEEEEeE-eCccCC-CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCM-AEGFPR-PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~-~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|. ..+.|. +.+.|++++..+..........  ...   ...|.|.+++.+|.|.|.|.+.+..+..
T Consensus        22 ~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~--~~~---~~~L~i~~v~~~d~G~Y~C~~~~~~~~~   92 (201)
T 3s97_C           22 EGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFV--SQT---NGNLYIANVEASDKGNYSCFVSSPSITK   92 (201)
T ss_dssp             TTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEE--CTT---TCCEEESSCCGGGCEEEEEEEEEGGGTE
T ss_pred             CCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEE--EcC---CCeEEECcCCcccCeEEEEEEEecCCCc
Confidence            5889999999 888898 9999999886654211100000  011   2369999999999999999999865543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.15  E-value=5e-11  Score=63.11  Aligned_cols=73  Identities=14%  Similarity=0.207  Sum_probs=54.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCe-EEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG-YYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.+.|.+.+.|.|.+.|++++..+.....       .........|.|..++.+|.| .|.|.+.|..|.....+.
T Consensus       172 ~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~-------~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~  244 (347)
T 2ifg_A          172 VGDDVLLRCQVEGRGLEQAGWILTELEQSATVM-------KSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQ  244 (347)
T ss_dssp             TTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC-------CCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEEC
T ss_pred             CCCcEEEEEEEecCCCCEEEEEcCCceeecccc-------cceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEE
Confidence            588999999999999999999998865432211       011122457999999999999 999999998877655443


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      +
T Consensus       245 l  245 (347)
T 2ifg_A          245 V  245 (347)
T ss_dssp             C
T ss_pred             E
Confidence            3

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.15  E-value=5.3e-11  Score=59.66  Aligned_cols=61  Identities=16%  Similarity=0.255  Sum_probs=46.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.++|.|...+.+.+.+.|+++|..+....  ..    ..   ....|.|.+++.+|+|.|.|.+.+.
T Consensus       119 ~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~--~~----~~---~~~~L~I~~v~~~D~G~Y~C~a~n~  179 (218)
T 1uct_A          119 PGENISLTCSSAHIPFDRFSLAKEGELSLPQH--QS----GE---HPANFSLGPVDLNVSGIYRCYGWYN  179 (218)
T ss_dssp             TTCCCEEEEECSSSCCSEEEEEETTCSSCCSE--EE----CS---SSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCCCEEEEEeCCCCCCCEEEEEECCCcccccc--cC----CC---ccCEEEEccCCcccCEEEEEEEEcC
Confidence            58899999976777888999999987665421  00    01   1357999999999999999999875

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.14  E-value=1.6e-09  Score=54.76  Aligned_cols=67  Identities=16%  Similarity=0.339  Sum_probs=46.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe----------------CCEEeccc---ceEEEEEEecCCCeEEEEEEEccCCCCCCe
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK----------------DDIELTFH---KYFQVHEWFLGNNTIKSKMEIDPATQKDAG   62 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~----------------~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   62 (83)
                      +|+.+.|.|.+.+.+.+.+.|++                ++......   .++.+...  .  ....+|.|.+++.+|+|
T Consensus        15 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~--~~~~~L~I~~v~~~D~G   90 (246)
T 4dzb_B           15 SGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA--S--LTLSTLTVTSAHPEDSS   90 (246)
T ss_dssp             TTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEE--E--TTEEEEEECSCCGGGCE
T ss_pred             CCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEec--C--CCEEEEEECCCCHHHCE
Confidence            58999999999999999999998                11111111   22222211  0  11357999999999999


Q ss_pred             EEEEEeeCCC
Q psy11826         63 YYECVADNPF   72 (83)
Q Consensus        63 ~y~C~~~~~~   72 (83)
                      .|.|.+.+..
T Consensus        91 ~Y~C~~~~~~  100 (246)
T 4dzb_B           91 FYICSARTSG  100 (246)
T ss_dssp             EEEEEECCSS
T ss_pred             EEEEEEecCC
Confidence            9999998654

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.14  E-value=1.8e-10  Score=55.82  Aligned_cols=72  Identities=17%  Similarity=0.208  Sum_probs=47.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCe-----EEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNT-----IKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.++|.|... .|.+.+.|++++..+................+     ...+|.|.+++.+|+|.|.|.+.+..+.
T Consensus         9 ~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~~~   85 (171)
T 1ccz_A            9 VYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDT   85 (171)
T ss_dssp             TTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCSC
T ss_pred             cCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCCCCc
Confidence            689999999974 48889999998764322110000000000000     1246999999999999999999988773

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.14  E-value=1.1e-10  Score=53.24  Aligned_cols=80  Identities=13%  Similarity=0.053  Sum_probs=46.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecc--------cceEEEEEE-ecCCC--eEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTF--------HKYFQVHEW-FLGNN--TIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~--------~~~~~~~~~-~~~~~--~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      +|+.+.|.|.......+.+.|++.......        ......... ..+..  ..+.+|.|.+++.+|+|.|.|.+.+
T Consensus        14 ~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~nvt~~D~G~Ytc~v~~   93 (111)
T 2qsq_A           14 EGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDAGFYTLHVIK   93 (111)
T ss_dssp             TTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEEEccCcccCCeEEEEEEEe
Confidence            688999999843333456899986532210        000000000 00000  0123799999999999999999998


Q ss_pred             CCc-ceeeEEEE
Q psy11826         71 PFA-IDRRGFRT   81 (83)
Q Consensus        71 ~~g-~~~~~~~~   81 (83)
                      ..+ .......|
T Consensus        94 ~~~~~~~~~~~L  105 (111)
T 2qsq_A           94 SDLVNEEATGQF  105 (111)
T ss_dssp             TTSCCEEEEEEE
T ss_pred             CCCcEEEEEEEE
Confidence            765 33434333

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.14  E-value=4.9e-11  Score=54.62  Aligned_cols=79  Identities=11%  Similarity=0.192  Sum_probs=49.5

Q ss_pred             CCceEEEEeEeCccCC----CeEEEEeCC-------EEecc-c-------------ceEEEEEEecCCCeEEEEEEEccC
Q psy11826          2 LGRKITFFCMAEGFPR----PHITWTKDD-------IELTF-H-------------KYFQVHEWFLGNNTIKSKMEIDPA   56 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~----~~~~w~~~~-------~~~~~-~-------------~~~~~~~~~~~~~~~~~~l~i~~~   56 (83)
                      .|+.+.|.|...+.+.    +.+.|++.+       ..+.. .             .+.....  ........+|.|.++
T Consensus        19 ~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~sL~I~~v   96 (126)
T 1eaj_A           19 KGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTS--NDLKSGDASINVTNL   96 (126)
T ss_dssp             TTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECC--SCGGGTBCCEEECSC
T ss_pred             eCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEc--ccccCCeEEEEECcC
Confidence            5889999999876554    459999753       22110 0             0111000  000011246999999


Q ss_pred             CCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826         57 TQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus        57 ~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      +.+|+|.|.|.+.+..+.....+.|.
T Consensus        97 ~~~D~G~Y~C~v~~~~~~~~~~~~L~  122 (126)
T 1eaj_A           97 QLSDIGTYQCKVKKAPGVANKKIHLV  122 (126)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             ChHHCeEEEEEEEcCCccCCcEEEEE
Confidence            99999999999998877666555543

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.14  E-value=1.1e-09  Score=55.28  Aligned_cols=78  Identities=13%  Similarity=0.265  Sum_probs=50.2

Q ss_pred             CC-ceEEEEeEeCcc-CCC-eEEEEe-CCEEecccceEEEEEEecCCCeEEEEEEEccCCC--CCCeEEEEEeeCCCcce
Q psy11826          2 LG-RKITFFCMAEGF-PRP-HITWTK-DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ--KDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g-~~~~~~C~~~~~-~~~-~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--~~~g~y~C~~~~~~g~~   75 (83)
                      .| +.+.|.|.+.+. |.| .+.|++ ++..+.......... ........+.|.|.....  .|.|.|.|.+.|..+..
T Consensus       139 ~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~  217 (232)
T 1dn0_B          139 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVL-RGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNK  217 (232)
T ss_dssp             --CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEE-ETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCE
T ss_pred             CCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccc-cCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCc
Confidence            35 789999998876 776 899999 887765410000000 011122345788888776  78999999999998875


Q ss_pred             eeEEE
Q psy11826         76 RRGFR   80 (83)
Q Consensus        76 ~~~~~   80 (83)
                      .....
T Consensus       218 ~~~~~  222 (232)
T 1dn0_B          218 EKNVP  222 (232)
T ss_dssp             EEEEE
T ss_pred             ceeEe
Confidence            44433

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.14  E-value=1.1e-09  Score=54.16  Aligned_cols=69  Identities=19%  Similarity=0.295  Sum_probs=48.0

Q ss_pred             CCCceEEEEeEeCccCCCeEEEEeC--CEEe---c---------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEE
Q psy11826          1 MLGRKITFFCMAEGFPRPHITWTKD--DIEL---T---------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC   66 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~~~~~w~~~--~~~~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C   66 (83)
                      ..|+.+.|.|.+.+.|.+.+.|+++  +..+   .         ...++....     ......|.|.+++.+|.|.|.|
T Consensus        13 ~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C   87 (210)
T 1lk3_L           13 SPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG-----SGTDFTLTIDPVEADDTAIYFC   87 (210)
T ss_dssp             CTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEE
T ss_pred             cCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe-----cCCEEEEEECCCCHHHCeEEEE
Confidence            3689999999999988889999873  2211   0         011222111     0113479999999999999999


Q ss_pred             EeeCCCcc
Q psy11826         67 VADNPFAI   74 (83)
Q Consensus        67 ~~~~~~g~   74 (83)
                      .+.+..+.
T Consensus        88 ~~~~~~~~   95 (210)
T 1lk3_L           88 QQSWNGPL   95 (210)
T ss_dssp             EECSSSSC
T ss_pred             EEEcCCCc
Confidence            99987653

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.13  E-value=1.2e-10  Score=57.76  Aligned_cols=74  Identities=15%  Similarity=0.213  Sum_probs=45.3

Q ss_pred             CCceEEEEeEeCccCC----CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFPR----PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+.++    +.+.|++++..+.............+.....+.|.|......|.|.|.|.+.|..+..
T Consensus        17 ~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~   94 (207)
T 1l6x_A           17 ISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA   94 (207)
T ss_dssp             TTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS
T ss_pred             cCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCc
Confidence            6899999999988753    4899999997665321100000001111223344444444445999999999987653

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.13  E-value=1.2e-10  Score=58.24  Aligned_cols=74  Identities=14%  Similarity=0.259  Sum_probs=50.1

Q ss_pred             CCceEEEEeEeCcc-CC--CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAEGF-PR--PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      .|+.+.|.|.+.+. |.  +.+.|++++..+.... ..............+.|.|......|.|.|.|.+.|..+...
T Consensus       136 ~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~-~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          136 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVN-FPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEE-CCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             CCCcEEEEEEEEeEECCCcEEEEEecCCEecceEe-cCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            47889999998886 65  6899999886542100 000000111223345789988888899999999999887654

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.13  E-value=2.6e-10  Score=56.67  Aligned_cols=76  Identities=16%  Similarity=0.239  Sum_probs=48.2

Q ss_pred             CCceEEEEeEeCccCC-----CeEEEEeCCEEeccc---------------ceEEEEEEecCCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGFPR-----PHITWTKDDIELTFH---------------KYFQVHEWFLGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~-----~~~~w~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   61 (83)
                      .|+.+.|.|.+.+.|.     +.+.|++++..+...               .+.....  ........+|.|.+++.+|.
T Consensus        15 ~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~--~~~~~~~~~L~I~~v~~~D~   92 (222)
T 3sbw_C           15 YGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLK--DQLSLGNAALQITDVKLQDA   92 (222)
T ss_dssp             TTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECH--HHHTTTEEEEEESSCCGGGC
T ss_pred             cCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEcc--ccccCCEEEEEEcCcccccC
Confidence            5899999999876663     489999976332110               0111000  00011235799999999999


Q ss_pred             eEEEEEeeCCCcceeeEEE
Q psy11826         62 GYYECVADNPFAIDRRGFR   80 (83)
Q Consensus        62 g~y~C~~~~~~g~~~~~~~   80 (83)
                      |.|.|.+.+ .+.....+.
T Consensus        93 G~Y~C~~~~-~~~~~~~~~  110 (222)
T 3sbw_C           93 GVYRCMISY-GGADYKRIT  110 (222)
T ss_dssp             EEEEEEEES-SSEEEEEEE
T ss_pred             eEEEEEEEe-CCCceeEEE
Confidence            999999998 444444433

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.13  E-value=6.6e-11  Score=60.12  Aligned_cols=72  Identities=14%  Similarity=0.264  Sum_probs=49.3

Q ss_pred             CceEEEEeEeCcc-CCC-eEEEEeCCEEecccceEEEEEE--ecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          3 GRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEW--FLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         3 g~~~~~~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      |+.+.+.|.+.+. |.+ .+.|++++..+...........  .+......+.|.|..+..+|.|.|.|.+.|....
T Consensus       165 g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          165 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             HTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             CCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence            6789999999884 443 6999999987754311100000  0111234567999999999999999999997654

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.13  E-value=1.1e-10  Score=58.93  Aligned_cols=72  Identities=13%  Similarity=0.279  Sum_probs=49.8

Q ss_pred             CCceEEEEeEeCcc-CC-C-eEEEEeCCEEe-cccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGF-PR-P-HITWTKDDIEL-TFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~-~-~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+. |. | .+.|+++|..+ ...... ............+.|.|..+..+|.|.|.|.+.+..+.
T Consensus        27 ~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~-~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~  102 (231)
T 2w59_A           27 ISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMV-LQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQHEELP  102 (231)
T ss_dssp             TSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCE-EEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTCS
T ss_pred             cCCceEEEEEEeCccCCCCeEEEEEcCCeecccccccc-ceECCCCcEEEEEEEEecchhccCCCEEEEEEEcCCCC
Confidence            58899999999885 63 5 99999988766 221111 11111112234567999999999999999999987654

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.13  E-value=1.3e-09  Score=56.13  Aligned_cols=63  Identities=16%  Similarity=0.315  Sum_probs=44.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.    +.|++++..+...  ..    ........+.|.|..++.+|+|.|.|.+.|..|.
T Consensus        14 ~G~~v~L~C~~~~~----v~W~~~~~~~~~~--~~----~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~   76 (289)
T 3mjg_X           14 VSSTFVLTCSGSAP----VVWERMSQEPPQE--MA----KAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGL   76 (289)
T ss_dssp             TTCCEEEEEEESSC----CEEEBTTBCCSEE--EE----ECTTSCEEEEEEECSCCGGGCEEEEEECCC----
T ss_pred             CCCcEEEEEeccce----EEEECCCCCcccc--ee----ccCCCceeEEEEEccCChhhCEEEEEEEcccCCC
Confidence            58999999998764    8999998776321  11    1122223468999999999999999999998765

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=99.13  E-value=8.3e-10  Score=49.81  Aligned_cols=66  Identities=15%  Similarity=0.312  Sum_probs=44.4

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeCC--EE----ecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKDD--IE----LTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      .|+.+.|.|...+.+  .+.+.|++..  ..    +....++.....   .......|.|.+++.+|+|.|.|.+.+
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (108)
T 2coq_A           14 TGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVD---EGSNSASLTIRDLRVEDSGTYKCKAYR   87 (108)
T ss_dssp             TTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEEECCCBTTEEEEEE---TTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEEEEeCCceEEEEc---CCCCEEEEEECCCCcccCEEEEEEEEe
Confidence            689999999987653  5689999742  21    111222322111   111246799999999999999999976

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.13  E-value=6.4e-10  Score=56.24  Aligned_cols=66  Identities=17%  Similarity=0.277  Sum_probs=47.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEecc------------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELTF------------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.+.|.|.+.+.+.+.+.|++  ++..+..            ..++...     .......|.|.+++.+|+|.|.|.
T Consensus       149 ~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~  223 (247)
T 2ghw_B          149 PGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGS-----GSGTDFTLTISRLEPEDFAVYYCQ  223 (247)
T ss_dssp             TTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----CSSSEEEEEECSCCGGGCEEEEEE
T ss_pred             CCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEe-----cCCCeEEEEECcCCHHHCEEEEEE
Confidence            58899999999999989999998  4433210            1111110     112245799999999999999999


Q ss_pred             eeCCC
Q psy11826         68 ADNPF   72 (83)
Q Consensus        68 ~~~~~   72 (83)
                      +.+..
T Consensus       224 a~~~~  228 (247)
T 2ghw_B          224 QRSNW  228 (247)
T ss_dssp             ECSSS
T ss_pred             EccCC
Confidence            98753

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.12  E-value=1.8e-09  Score=61.77  Aligned_cols=80  Identities=19%  Similarity=0.280  Sum_probs=50.6

Q ss_pred             CCceEEEEeEeCc--cCCCeEEEEeCCEEecccceEEEEEEec---CCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAEG--FPRPHITWTKDDIELTFHKYFQVHEWFL---GNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      .|+.+.|.|.+.+  .+.+.+.|++++..+.............   ......+.|.|..++.+|.|.|.|.+.|..+...
T Consensus       238 ~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~  317 (772)
T 3v2a_R          238 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKK  317 (772)
T ss_dssp             TTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEE
T ss_pred             cCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCccee
Confidence            5889999999877  4556899999887654422211100000   1223456899999999999999999999887655


Q ss_pred             eEEEE
Q psy11826         77 RGFRT   81 (83)
Q Consensus        77 ~~~~~   81 (83)
                      ....|
T Consensus       318 ~~~~l  322 (772)
T 3v2a_R          318 NSTFV  322 (772)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            54443

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.12  E-value=2.3e-10  Score=61.81  Aligned_cols=73  Identities=12%  Similarity=0.257  Sum_probs=51.8

Q ss_pred             CceEEEEeEeCc-cCCC-eEEEEeCCEEecccceEEEEEEec--CCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          3 GRKITFFCMAEG-FPRP-HITWTKDDIELTFHKYFQVHEWFL--GNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         3 g~~~~~~C~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      |+.+.|.|.+.+ .|.| .+.|++++..+.............  ......+.|.|..+..+|.|.|.|.+.|..+..
T Consensus       131 g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  207 (438)
T 1qgc_4          131 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  207 (438)
T ss_dssp             TTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             CCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC
Confidence            678999999877 6777 899999998876541111111001  112234689999999999999999999987763

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.12  E-value=9.9e-11  Score=58.03  Aligned_cols=72  Identities=15%  Similarity=0.254  Sum_probs=46.8

Q ss_pred             CceEEEEeEeCcc-CC-CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          3 GRKITFFCMAEGF-PR-PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         3 g~~~~~~C~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      |..+.|.|.+.|. |. +.+.|+++|..+............++.....+.|.+......|.|.|.|.+.|....
T Consensus       124 ~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  197 (207)
T 1l6x_A          124 KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  197 (207)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence            5569999999885 44 389999999877632211111111122234456777766667789999999987543

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.12  E-value=1e-10  Score=58.59  Aligned_cols=65  Identities=14%  Similarity=-0.014  Sum_probs=46.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEE--EEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKS--KMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.++|.|.+.+ +.+.+.|++++..+...... .     .......  .|.|.+++.+|+|.|.|.+.|..+
T Consensus        22 ~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~-~-----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~   88 (218)
T 1uct_A           22 LDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGR-R-----LKFWNETDPEFVIDHMDANKAGRYQCQYRIGHY   88 (218)
T ss_dssp             TTCCEEEEECCCT-TCSEEEEEEEETTEEEECSE-E-----CC----CCCEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             CCCCEEEEEEcCC-CCCEEEEEECCCcccccccc-c-----CCCCcceeeEEEEcccccccCEEEEEEEEcCCC
Confidence            5899999999876 67899999987544321110 0     0001123  799999999999999999998754

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=99.12  E-value=4.4e-10  Score=51.82  Aligned_cols=80  Identities=20%  Similarity=0.324  Sum_probs=48.7

Q ss_pred             CCCceEEEEeEeCccCC---CeEEEEeCCEEeccc------------------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFPR---PHITWTKDDIELTFH------------------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~---~~~~w~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      .+|+.+.|.|...+.+.   ..+.|++........                  .+....  .........+|.|.+++.+
T Consensus        13 ~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~--~~~~~~~~~sL~I~~v~~~   90 (123)
T 4gjt_B           13 VLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQP--PPPRNPLDGSVLLRNAVQA   90 (123)
T ss_dssp             CTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECC--CSSCCTTBCCEEEESCCSS
T ss_pred             EcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEe--cCCCcCCEEEEEECCCChH
Confidence            36999999999876544   357899853211100                  000000  0001112346999999999


Q ss_pred             CCeEEEEEeeC-CCcceeeEEEEe
Q psy11826         60 DAGYYECVADN-PFAIDRRGFRTD   82 (83)
Q Consensus        60 ~~g~y~C~~~~-~~g~~~~~~~~~   82 (83)
                      |+|.|.|.+.+ ..|.......|.
T Consensus        91 DsG~Y~C~v~t~~~g~~~~~~~L~  114 (123)
T 4gjt_B           91 DEGEYECRVSTFPAGSFQARLRLR  114 (123)
T ss_dssp             SCSEEEEEEEESSSCEEEEEEEEE
T ss_pred             HCEEEEEEEEECCCCeEEeEEEEE
Confidence            99999998764 566666665554

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.12  E-value=1.1e-09  Score=51.21  Aligned_cols=65  Identities=18%  Similarity=0.288  Sum_probs=45.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CEE---ec-ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DIE---LT-FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~~---~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+.  +.+.|+++  +..   +. ...++.+..  ..   ....|.|.+++.+|+|.|.|.+.|..|
T Consensus        31 ~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~--~~---~~~~L~I~~~~~~DsG~Y~C~a~n~~g  101 (133)
T 3khq_A           31 RSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSEEGRIVQTQ--NG---SVYTLTIQNIQYEDNGIYFCKQKCDSA  101 (133)
T ss_dssp             TTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCTTTTEEEEE--ET---TEEEEEECSCCGGGCEEEEEEESSCC-
T ss_pred             CCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEc--CC---CEEEEEECCCChHHCEEEEEEEEeCCC
Confidence            68999999998876  88999985  321   11 122333221  11   135799999999999999999998764

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=99.12  E-value=1.8e-09  Score=48.64  Aligned_cols=65  Identities=18%  Similarity=0.377  Sum_probs=45.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--E---Eecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--I---ELTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~---~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.+.|.|...+.+.+.+.|++..  .   .+..         ..++..     ........|.|.+++.+|+|.|.|.
T Consensus        15 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~-----~~~~~~~~L~I~~v~~~DsG~Y~C~   89 (108)
T 1qfw_M           15 VGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTG-----SGSATDFTLTISSVQAEDFADYHCG   89 (108)
T ss_dssp             TTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEEC-----CBCSSEEEEEESSCCTTCCSEEEEE
T ss_pred             CCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEE-----EcCCCEEEEEECCCChhhCEEEEEE
Confidence            6899999999988777889999743  1   1110         011111     1112245799999999999999999


Q ss_pred             eeCC
Q psy11826         68 ADNP   71 (83)
Q Consensus        68 ~~~~   71 (83)
                      +.+.
T Consensus        90 ~~~~   93 (108)
T 1qfw_M           90 QTYN   93 (108)
T ss_dssp             ECSS
T ss_pred             EccC
Confidence            9875

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=99.12  E-value=2.9e-10  Score=51.06  Aligned_cols=78  Identities=15%  Similarity=0.139  Sum_probs=46.8

Q ss_pred             CCceEEEEeEeCccCC---CeEEEEeCCEEe-------c--ccceEEE-----EEEecCCCeEEEEEEEccCCCCCCeEE
Q psy11826          2 LGRKITFFCMAEGFPR---PHITWTKDDIEL-------T--FHKYFQV-----HEWFLGNNTIKSKMEIDPATQKDAGYY   64 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~---~~~~w~~~~~~~-------~--~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~~~g~y   64 (83)
                      .|+.+.|.|...+.+.   ..+.|++.....       .  .......     ............+|.|.+++.+|+|.|
T Consensus         8 ~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y   87 (109)
T 2oyp_A            8 VGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTY   87 (109)
T ss_dssp             TTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGGGCEEE
T ss_pred             cCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCChhCeEE
Confidence            6899999999766543   348999854211       0  0000000     000000011134799999999999999


Q ss_pred             EEEeeCCCcceeeEE
Q psy11826         65 ECVADNPFAIDRRGF   79 (83)
Q Consensus        65 ~C~~~~~~g~~~~~~   79 (83)
                      .|.+.+..+......
T Consensus        88 ~C~v~~~~~~~~~~~  102 (109)
T 2oyp_A           88 CCRIQFPGLMNDKKL  102 (109)
T ss_dssp             EEEECCSSTTCCEEE
T ss_pred             EEEEEcCCcccceEE
Confidence            999998765544333

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.12  E-value=1.3e-10  Score=57.80  Aligned_cols=63  Identities=11%  Similarity=0.056  Sum_probs=43.0

Q ss_pred             CC--ceEEEEeEeCccCCCeEEEEeC---CEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LG--RKITFFCMAEGFPRPHITWTKD---DIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g--~~~~~~C~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      +|  +.+.|.|.+.+ |.+.+.|++.   +..+.........    .    ...|.|..++.+|+|.|.|.+.|..+
T Consensus        21 eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~----~----~~~l~I~~v~~~D~G~Y~C~a~n~~~   88 (213)
T 2x1w_L           21 ENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWD----S----KKGFTIPSYMISYAGMVFCEAKINDE   88 (213)
T ss_dssp             CSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEE----T----TTEEEEEGGGTTTCSEEEEEEC----
T ss_pred             cCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCccccc----C----CccEEEccCChhcCceEEEEEEECCe
Confidence            47  99999999876 7789999874   5544433221111    1    12589999999999999999987544

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.11  E-value=5.8e-11  Score=58.42  Aligned_cols=72  Identities=17%  Similarity=0.373  Sum_probs=47.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccce--EEEEEEecCC-CeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKY--FQVHEWFLGN-NTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++..+.....  .......... ......|.|.+++.+|.|.|.|.+.+..|
T Consensus        18 ~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g   92 (209)
T 1nbq_A           18 ENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGG   92 (209)
T ss_dssp             TTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETTS
T ss_pred             cCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEEEEEEecCCC
Confidence            588999999998889999999986643211000  0000000000 00114799999999999999999998755

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.11  E-value=1.2e-09  Score=54.13  Aligned_cols=67  Identities=15%  Similarity=0.263  Sum_probs=46.6

Q ss_pred             CCceEEEEeEeCcc-CCCeEEEEeCC--EEe---cc--c-----------ceEEEEEEecCCCeEEEEEEEccCCCCCCe
Q psy11826          2 LGRKITFFCMAEGF-PRPHITWTKDD--IEL---TF--H-----------KYFQVHEWFLGNNTIKSKMEIDPATQKDAG   62 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~~~~w~~~~--~~~---~~--~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   62 (83)
                      .|+.+.|.|.+.+. |.+.+.|++..  ...   ..  .           .++....     .....+|.|.+++.+|.|
T Consensus        14 ~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G   88 (218)
T 3s96_B           14 LGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS-----SGADRYLSISNIQPEDEA   88 (218)
T ss_dssp             TTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred             CCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec-----CCceEEEEEccCCcccCE
Confidence            58999999999988 89999999822  110   00  0           1111111     111357999999999999


Q ss_pred             EEEEEeeCCCc
Q psy11826         63 YYECVADNPFA   73 (83)
Q Consensus        63 ~y~C~~~~~~g   73 (83)
                      .|.|.+.+..|
T Consensus        89 ~Y~C~~~~~~~   99 (218)
T 3s96_B           89 IYICGVGDTIK   99 (218)
T ss_dssp             EEEEEEEEEET
T ss_pred             EEEEEEecCCC
Confidence            99999988765

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.11  E-value=1.5e-09  Score=53.76  Aligned_cols=67  Identities=19%  Similarity=0.312  Sum_probs=46.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--EEe---c---------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--IEL---T---------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.+.|.|.+.+.|.+.+.|++..  ...   .         ...++....     ......|.|.+++.+|+|.|.|.
T Consensus        15 ~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~   89 (213)
T 3r06_A           15 LGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSG-----SGRDSSFTISSLESEDIGSYYCQ   89 (213)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCSEEEEE
T ss_pred             CCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEec-----cCCEEEEEECCCCcccCEEEEEe
Confidence            6899999999999999999998732  110   0         011222110     11235799999999999999999


Q ss_pred             eeCCCc
Q psy11826         68 ADNPFA   73 (83)
Q Consensus        68 ~~~~~g   73 (83)
                      +.+..+
T Consensus        90 ~~~~~~   95 (213)
T 3r06_A           90 QYYNYP   95 (213)
T ss_dssp             ECSSSS
T ss_pred             cccCCc
Confidence            988653

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.11  E-value=1.5e-09  Score=56.75  Aligned_cols=75  Identities=13%  Similarity=0.206  Sum_probs=50.7

Q ss_pred             ceEEEEeE-eCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          4 RKITFFCM-AEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         4 ~~~~~~C~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      +.+.+.|. ..+.|.|.+.|++++.......   ............+.|.|..+...|.|.|.|.+.|..+.....+.|
T Consensus       151 ~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l  226 (331)
T 3u83_A          151 KVLVATCTSANGKPPSVVSWETRLKGEAEYQ---EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTL  226 (331)
T ss_dssp             CEEEEEEEEEEEBSCCEEEEEESSCCEEEEE---EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEEC
T ss_pred             ceEEEEEEecCCcCCceEEEEcCCCCccccc---eeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEE
Confidence            67999997 7889999999998532111100   001011122334679999999999999999999988776555443

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.11  E-value=3e-10  Score=55.85  Aligned_cols=80  Identities=16%  Similarity=0.187  Sum_probs=50.5

Q ss_pred             CCceEEEEeEeCc-cCCCeEEEEeCCEEecc----cce---EEEEEE-ecCCC--eEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEG-FPRPHITWTKDDIELTF----HKY---FQVHEW-FLGNN--TIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~~~~w~~~~~~~~~----~~~---~~~~~~-~~~~~--~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      +|+.+.|.|...+ .+.+.+.|++++..+..    ...   ...... .....  ....+|.|.+++.+|+|.|.|.+.+
T Consensus        12 ~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~~~~   91 (193)
T 2if7_A           12 LGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQIST   91 (193)
T ss_dssp             TTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEEEEEEEEC
T ss_pred             ecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCceEEEEEEe
Confidence            6899999999765 45578999998754321    000   000000 00000  0124699999999999999999999


Q ss_pred             CCcceeeEEEE
Q psy11826         71 PFAIDRRGFRT   81 (83)
Q Consensus        71 ~~g~~~~~~~~   81 (83)
                      ..+.....+.|
T Consensus        92 ~~~~~~~~~~L  102 (193)
T 2if7_A           92 KTSAKLSSYTL  102 (193)
T ss_dssp             SSCEEEEEEEE
T ss_pred             cCCCeEEEEEE
Confidence            87765444433

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.11  E-value=3.7e-10  Score=58.84  Aligned_cols=80  Identities=18%  Similarity=0.260  Sum_probs=49.2

Q ss_pred             CCceEEEEeEeCccCCC-----eEEEEeCCEEecc-------------cceEEEEEEecCCCeEEEEEEEccCCCCCCeE
Q psy11826          2 LGRKITFFCMAEGFPRP-----HITWTKDDIELTF-------------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-----~~~w~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   63 (83)
                      +|+.+.|.|.+.+.+.+     .+.|++++.....             ..+...............+|.|.+++.+|+|.
T Consensus        14 ~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~D~G~   93 (313)
T 4fqp_A           14 LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGN   93 (313)
T ss_dssp             TTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSCCGGGCEE
T ss_pred             cCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcCChhhCEE
Confidence            69999999998776655     4899997753221             11111110000111123469999999999999


Q ss_pred             EEEEee-CCCcceeeEEEE
Q psy11826         64 YECVAD-NPFAIDRRGFRT   81 (83)
Q Consensus        64 y~C~~~-~~~g~~~~~~~~   81 (83)
                      |.|.+. +..+.......|
T Consensus        94 Y~C~v~~~~~~~~~~~~~l  112 (313)
T 4fqp_A           94 YTCLFVTFPQGSRSVDIWL  112 (313)
T ss_dssp             EEEEEECSSSCEEEEEEEE
T ss_pred             EEEEEeeccCcceeeeeee
Confidence            999875 444554444443

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.11  E-value=1.6e-10  Score=56.93  Aligned_cols=78  Identities=13%  Similarity=0.187  Sum_probs=50.4

Q ss_pred             CCceEEEEeEeCccC----CCeEEEEeCC----------------EEecc-----cceEEEEEEecCCCeEEEEEEEccC
Q psy11826          2 LGRKITFFCMAEGFP----RPHITWTKDD----------------IELTF-----HKYFQVHEWFLGNNTIKSKMEIDPA   56 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~----~~~~~w~~~~----------------~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~   56 (83)
                      +|+.+.|.|.+.+.+    .+.+.|++.+                .....     ..+.....  ........+|.|.++
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~~L~i~~v   91 (214)
T 3jz7_A           14 KGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTS--NDVKSGDASINVTNL   91 (214)
T ss_dssp             TTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESC--SCGGGTBCCEEECSC
T ss_pred             cCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEec--cCccCCcccEEEccC
Confidence            589999999988776    4689998732                22211     01111100  000011346999999


Q ss_pred             CCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826         57 TQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus        57 ~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      +.+|.|.|.|.+.+..+.....+.|
T Consensus        92 ~~~D~G~Y~C~~~~~~~~~~~~~~l  116 (214)
T 3jz7_A           92 QLSDIGTYQCKVKKAPGVANKKFLL  116 (214)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             ChhhCeEEEEEEEeCCCccccEEEE
Confidence            9999999999999988766555544

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=99.11  E-value=3.8e-09  Score=47.69  Aligned_cols=65  Identities=17%  Similarity=0.320  Sum_probs=45.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--E--E-ecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--I--E-LTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~--~-~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.+.|.|.+.+.+.+.+.|++..  .  . +..         ..++....     ......|.|.+++.+|+|.|.|.
T Consensus        17 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~   91 (109)
T 2q20_A           17 VGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSG-----SGTDFTFTISSLQPEDIATYYCQ   91 (109)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEec-----cCCEEEEEECCCChhhCEEEEEE
Confidence            6899999999988878899999743  1  1 110         11111110     01135799999999999999999


Q ss_pred             eeCC
Q psy11826         68 ADNP   71 (83)
Q Consensus        68 ~~~~   71 (83)
                      +.+.
T Consensus        92 ~~~~   95 (109)
T 2q20_A           92 QYDN   95 (109)
T ss_dssp             ECSS
T ss_pred             EeeC
Confidence            9874

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.10  E-value=1.5e-09  Score=60.53  Aligned_cols=77  Identities=12%  Similarity=0.051  Sum_probs=51.5

Q ss_pred             CCceEEEEeEeCccCCC---eEEEEeCCEEec-----cc---------ceEEEEEEecCCCeEEEEEEEccCCCCCCeEE
Q psy11826          2 LGRKITFFCMAEGFPRP---HITWTKDDIELT-----FH---------KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY   64 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~---~~~w~~~~~~~~-----~~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y   64 (83)
                      .|+.+.|.|.+.+.+.+   .+.|++++....     ..         .+..+.   .........|.|.+++.+|+|.|
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~g~~~L~I~~v~~~D~G~Y   90 (585)
T 2ocw_A           14 EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT---NFPENGTFVVNIAQLSQDDSGRY   90 (585)
T ss_pred             cCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEE---ecCCCCEEEEEECCCCcccCEEE
Confidence            68999999998887654   789999875321     10         111111   00012235799999999999999


Q ss_pred             EEEeeCCCcceeeEEEE
Q psy11826         65 ECVADNPFAIDRRGFRT   81 (83)
Q Consensus        65 ~C~~~~~~g~~~~~~~~   81 (83)
                      .|.+.+..+.....+.|
T Consensus        91 ~C~~~n~~~~~~~~~~l  107 (585)
T 2ocw_A           91 KCGLGINSRGLSFDVSL  107 (585)
T ss_pred             EEEcccCCCCceEEEEE
Confidence            99998877765544443

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.10  E-value=2.3e-10  Score=55.95  Aligned_cols=61  Identities=18%  Similarity=0.457  Sum_probs=44.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .|+.+.|.|.+.+ +.+.+.|++++..+....  .    .   ......|.|..++.+|+|.|.|.+.|..
T Consensus       112 ~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~--~----~---~~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          112 SGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQR--G----Y---GKVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             TTCEEEEEEECSS-SCSEEEEEEESSSCEEEE--E----E---CSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             cCCEEEEEEEcCC-CCCEEEEEECCccccccc--c----C---CCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            5889999999765 456899999886544210  0    0   0113579999999999999999998754

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.10  E-value=2.1e-11  Score=61.19  Aligned_cols=72  Identities=13%  Similarity=0.214  Sum_probs=43.5

Q ss_pred             CceEEEEeEeCccC-CC-eEEEEeCCEEecccceEEEEEE--ecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          3 GRKITFFCMAEGFP-RP-HITWTKDDIELTFHKYFQVHEW--FLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         3 g~~~~~~C~~~~~~-~~-~~~w~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      |+.+.+.|.+.+.+ .+ .+.|++++..+...........  .+......+.|.|.....+|.|.|.|.+.|....
T Consensus       149 g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          149 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             TTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             CCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            78899999998854 43 6999999887654311100000  0111234567899998889999999999986544

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.10  E-value=5.1e-10  Score=57.08  Aligned_cols=66  Identities=15%  Similarity=0.230  Sum_probs=47.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEecc------------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELTF------------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.+.|.|.+.+.+.+.+.|++  ++..+..            ..++....     ......|.|.+++.+|+|.|.|.
T Consensus       153 ~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~  227 (257)
T 1f3r_B          153 VGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG-----SGTDYTLTISSLQPEDVATYFCY  227 (257)
T ss_dssp             TTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----EBTEEEEEECSCCGGGCSEEEEE
T ss_pred             CCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEec-----CCCEEEEEECCCChhhCEEEEEE
Confidence            58899999999998888999998  4433210            11121110     01135799999999999999999


Q ss_pred             eeCCC
Q psy11826         68 ADNPF   72 (83)
Q Consensus        68 ~~~~~   72 (83)
                      +.|..
T Consensus       228 a~n~~  232 (257)
T 1f3r_B          228 QYNNG  232 (257)
T ss_dssp             EESSS
T ss_pred             EeCCC
Confidence            99864

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.10  E-value=1.3e-09  Score=55.56  Aligned_cols=69  Identities=13%  Similarity=0.327  Sum_probs=46.4

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeC--CEEecc----------------cceEEEEEEecCCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKD--DIELTF----------------HKYFQVHEWFLGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~--~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   61 (83)
                      +|+.+.|.|.+.+.|  .+.+.|++.  +..+..                ..++.+...   ......+|.|.+++.+|+
T Consensus        14 ~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~v~~~Ds   90 (257)
T 1f3r_B           14 PSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRD---TSKNQVFLKMNSLQTDDT   90 (257)
T ss_dssp             TTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEE---TTTTEEEEEEESCCTTCC
T ss_pred             CCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEE---CCCCEEEEEECCCCcccC
Confidence            689999999998875  688999974  211100                111221110   011235799999999999


Q ss_pred             eEEEEEeeCCCc
Q psy11826         62 GYYECVADNPFA   73 (83)
Q Consensus        62 g~y~C~~~~~~g   73 (83)
                      |.|.|.+.+..|
T Consensus        91 G~Y~C~a~n~~g  102 (257)
T 1f3r_B           91 GTYYCTRDLYGG  102 (257)
T ss_dssp             EEEEEEEESSSS
T ss_pred             EEEEEEEccccc
Confidence            999999998753

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.09  E-value=2.6e-10  Score=56.08  Aligned_cols=64  Identities=14%  Similarity=0.211  Sum_probs=46.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .|+.+.|.|.+.+.|. .+.|++++..+........      .......|.|.+++.+|+|.|.|.+.|..
T Consensus        18 ~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (198)
T 1ugn_A           18 QGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQ------ELVKKGQFPIPSITWEHTGRYRCYYGSDT   81 (198)
T ss_dssp             TTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCH------HHHTTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCcEEEEEEecCCCc-EEEEEECCccccccccccc------cCCcccEEEECCCCHHHCeEEEEEEECCC
Confidence            5899999999888765 6999999876632110000      00002369999999999999999998876

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=99.09  E-value=3.1e-09  Score=48.18  Aligned_cols=77  Identities=12%  Similarity=0.069  Sum_probs=48.5

Q ss_pred             CCceEEEEeEeCccCC-CeEEEEeCCE-----Eecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEE
Q psy11826          2 LGRKITFFCMAEGFPR-PHITWTKDDI-----ELTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC   66 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~-~~~~w~~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C   66 (83)
                      +|+.+.|.|...+... ..+.|++...     .+..         ..++....   ........|.|.+++.+|+|.|.|
T Consensus        15 ~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~~sL~I~~~~~~DsG~Y~C   91 (113)
T 1zox_A           15 EQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRD---NQRDFIFTVTMEDLRMSDAGIYWC   91 (113)
T ss_dssp             TTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEE---ETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             CCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEE---CCcCCEEEEEEccCCHHHCEEEEE
Confidence            5899999999876443 3599998542     1110         01111111   111224579999999999999999


Q ss_pred             EeeCCCcceeeEEEE
Q psy11826         67 VADNPFAIDRRGFRT   81 (83)
Q Consensus        67 ~~~~~~g~~~~~~~~   81 (83)
                      .+.+........+.|
T Consensus        92 ~v~~~~~~~~~~v~L  106 (113)
T 1zox_A           92 GITKGGLDPMFKVTV  106 (113)
T ss_dssp             EECCSSSCCEEEEEE
T ss_pred             eeEcCCCCccEEEEE
Confidence            998875444444444

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.09  E-value=1.2e-10  Score=58.44  Aligned_cols=73  Identities=15%  Similarity=0.362  Sum_probs=48.7

Q ss_pred             CCceEEEEeEeCcc-CCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      .|+.+.|.|.+.+. |.| .+.|++++..+......... ..+......+.|.|..+...| |.|.|.+.|..+...
T Consensus       142 ~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~-~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          142 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVL-QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             CCCEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCCEE-CTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             CCCcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCcee-CCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence            57889999999886 766 89999988653211000000 011122345679999888888 999999999776543

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.08  E-value=4.4e-10  Score=56.44  Aligned_cols=75  Identities=20%  Similarity=0.414  Sum_probs=50.0

Q ss_pred             CCceEEEEeEeCcc-CCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.|.|.+.+. |.| .+.|++++..+.........  ........+.|.|..+...+ |.|.|.+.|..+......
T Consensus       144 ~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~  220 (228)
T 3bae_H          144 TGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVL--QSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDK  220 (228)
T ss_dssp             CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEEEEE--ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             CCCCEEEEEEEccEeCCCEEEEEeeCCcccCceEcCcee--CCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEE
Confidence            57889999999886 777 89999987643211111111  11112234578888888755 999999999888765443

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.08  E-value=1.3e-09  Score=53.26  Aligned_cols=65  Identities=14%  Similarity=0.120  Sum_probs=46.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.++|.|.+.+ +.+.+.|++++..+.....      ..........|.|.+++.+|+|.|.|.+.+..+
T Consensus        17 ~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~------~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   81 (188)
T 1oll_A           17 KEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP------KPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (188)
T ss_dssp             TTCCEEEEEECCT-TCCEEEEEETTEEEEEECC------SSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCCCEEEEEecCC-CCCEEEEEECCCccccccc------ccCCCcceeEEEeCcCCcccCeEEEEEecCCCC
Confidence            5899999999765 3468899999876542100      000111245799999999999999999987543

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.08  E-value=2.1e-10  Score=56.76  Aligned_cols=74  Identities=14%  Similarity=0.150  Sum_probs=47.5

Q ss_pred             CCceEEEEeEeCccCCCe---EEEEeCCEEeccc----------------ceEEEEEE--ecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFPRPH---ITWTKDDIELTFH----------------KYFQVHEW--FLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~---~~w~~~~~~~~~~----------------~~~~~~~~--~~~~~~~~~~l~i~~~~~~~   60 (83)
                      +|+.+.|.|.+.+.+.+.   +.|++++..+...                ........  .........+|.|.+++.+|
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D   94 (225)
T 4fmk_A           15 LGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGLRVED   94 (225)
T ss_dssp             TTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECSCCGGG
T ss_pred             cCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEccCCHHH
Confidence            699999999998877664   7899876432110                00000000  00011123469999999999


Q ss_pred             CeEEEEEeeCCCcce
Q psy11826         61 AGYYECVADNPFAID   75 (83)
Q Consensus        61 ~g~y~C~~~~~~g~~   75 (83)
                      +|.|.|.+.+..+..
T Consensus        95 ~G~Y~C~~~~~~~~~  109 (225)
T 4fmk_A           95 EGNYTCEFATFPNGT  109 (225)
T ss_dssp             CEEEEEEEEEETTEE
T ss_pred             CcceEEEEEeCCCcc
Confidence            999999998866543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.08  E-value=1.4e-09  Score=53.76  Aligned_cols=65  Identities=14%  Similarity=0.236  Sum_probs=45.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CEEec------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DIELT------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.+.|.|.+.  +.+.+.|++.  +....            ...++....     .....+|.|.+++.+|+|.|.|.
T Consensus        14 ~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~   86 (211)
T 3tv3_L           14 PGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK-----SGNTASLTVSGLQTDDEAVYYCG   86 (211)
T ss_dssp             TTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEEESCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc-----cCCEEEEEECCCChhHCEEEEEE
Confidence            689999999987  8889999983  22111            111222111     11135799999999999999999


Q ss_pred             eeCCCc
Q psy11826         68 ADNPFA   73 (83)
Q Consensus        68 ~~~~~g   73 (83)
                      +.+..+
T Consensus        87 ~~~~~~   92 (211)
T 3tv3_L           87 SLVGNW   92 (211)
T ss_dssp             EEETTT
T ss_pred             EecCCC
Confidence            998766

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=99.08  E-value=3.7e-10  Score=52.22  Aligned_cols=81  Identities=16%  Similarity=0.198  Sum_probs=49.1

Q ss_pred             CCceEEEEeEeCccCCC----eEEEEeCCE----------------Eecc----cceEEEEEEecCC------CeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRP----HITWTKDDI----------------ELTF----HKYFQVHEWFLGN------NTIKSKM   51 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~----~~~w~~~~~----------------~~~~----~~~~~~~~~~~~~------~~~~~~l   51 (83)
                      +|+.+.|.|.....+.+    .+.|++...                ....    ..+..........      .....+|
T Consensus        16 ~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~~~~~~~sL   95 (128)
T 3r0n_A           16 LGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAELQDATL   95 (128)
T ss_dssp             TTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCCCBCSBCCE
T ss_pred             cCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccccCCCCeEE
Confidence            68999999998776655    789998521                1111    0111110000000      0113479


Q ss_pred             EEccCCCCCCeEEEEEeeC-CCcceeeEEEEe
Q psy11826         52 EIDPATQKDAGYYECVADN-PFAIDRRGFRTD   82 (83)
Q Consensus        52 ~i~~~~~~~~g~y~C~~~~-~~g~~~~~~~~~   82 (83)
                      .|.+++.+|+|.|.|.+.. ..|.......|.
T Consensus        96 ~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~  127 (128)
T 3r0n_A           96 ALHGLTVEDEGNYTCEFATFPKGSVRGMTWLR  127 (128)
T ss_dssp             EECSCCGGGCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEccCCchhCeEEEEEEEeCCCCCcccEEEEE
Confidence            9999999999999998754 557666666554

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=99.08  E-value=3.6e-09  Score=49.17  Aligned_cols=69  Identities=16%  Similarity=0.248  Sum_probs=45.9

Q ss_pred             CCceEEEEeEeCcc--CCCeEEEEeC--CEEe----cccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGF--PRPHITWTKD--DIEL----TFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~--~~~~~~w~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|...+.  +.+.+.|++.  +...    ....++.....   .......|.|.+++.+|+|.|.|.+.+..+
T Consensus        14 ~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~R~~~~~~---~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~   90 (126)
T 3moq_A           14 TGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVN---KGSKSFSLRISDLRVEDSGTYKCQAFYVFF   90 (126)
T ss_dssp             TTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEE---TTTTEEEEEECSCCGGGCEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEeecCccCCceEEEEEeCCCCCceEEEEeCCcEEEEEe---CCCCEEEEEECcCChHhCEEEEEEEEEcCC
Confidence            58999999998664  5678999973  3221    11222222211   111246799999999999999999987543

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.08  E-value=9.6e-10  Score=54.47  Aligned_cols=72  Identities=15%  Similarity=0.126  Sum_probs=46.7

Q ss_pred             CCceEEEEeEeCccCC---CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPR---PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~---~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.++   +.+.|++++..+........ ..........+.|.|......|.|.|.|.+.|..+.
T Consensus       105 ~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~-~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~  179 (202)
T 1vca_A          105 AGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLED-ADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE  179 (202)
T ss_dssp             TTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSC-CSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             CCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccc-cCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccC
Confidence            5889999999987543   36899999986643210000 000000122345678877777889999999998765

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.08  E-value=4.3e-11  Score=64.61  Aligned_cols=77  Identities=18%  Similarity=0.377  Sum_probs=54.0

Q ss_pred             CCceEEEEeEeCcc-CCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.|.|.+.+. |.| .+.|++++..+.........  ..+.....+.|.|..+..+| |.|.|.+.|..|......
T Consensus       357 ~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~--~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~  433 (438)
T 1qgc_4          357 AASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVL--QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  433 (438)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEE--ETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEE
T ss_pred             cCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccc--cCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceee
Confidence            58899999999887 887 89999988765432110110  01122334578998888888 999999999998865554


Q ss_pred             EE
Q psy11826         80 RT   81 (83)
Q Consensus        80 ~~   81 (83)
                      .+
T Consensus       434 ~i  435 (438)
T 1qgc_4          434 KI  435 (438)
T ss_dssp             EC
T ss_pred             ec
Confidence            43

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.07  E-value=6.3e-09  Score=54.33  Aligned_cols=68  Identities=18%  Similarity=0.310  Sum_probs=48.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+. .+.+.+.|++++..+........    .........|.|..++.+|+|.|.|.+.|..+.
T Consensus       132 ~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  199 (316)
T 3vh8_G          132 SGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQ----IHDGVSKANFSIGPMMLALAGTYRCYGSVTHTP  199 (316)
T ss_dssp             TTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECE----EETTEEEEEEEECSCCGGGCEEEEEEEECTTCT
T ss_pred             CCCeEEEEEcCC-CCCcEEEEEECCCccccceeeee----ecCCCceEEEEECCCChhhCceEEEEEecCCCC
Confidence            588999999984 55678899998876643221110    011223457999999999999999999988763

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.07  E-value=3.8e-09  Score=52.09  Aligned_cols=63  Identities=17%  Similarity=0.276  Sum_probs=44.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.++|.|.+.+ +.+.+.|++++..+........    .........|.|.+++  |+|.|.|.+.+.
T Consensus       121 ~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~----~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          121 AGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGP----KVNGTFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             TTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEE----EETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             CCCeEEEEEeCCC-CCceEEEEECCcccCccccccc----ccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence            6899999999876 5678999999876543211000    0111124578999998  999999999754

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.07  E-value=1.7e-10  Score=57.26  Aligned_cols=55  Identities=24%  Similarity=0.439  Sum_probs=43.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.+.|.|.+   |.+.+.|++++..+.....        .    ...|.|..++.+|+|.|.|.+.+.
T Consensus        17 ~G~~v~L~C~~---p~~~i~W~k~g~~l~~~~~--------~----~~~L~i~~v~~~DsG~Y~C~~~~~   71 (204)
T 1sy6_A           17 EDGSVLLTCDA---EAKNITWFKDGKMIGFLTE--------D----KKKWNLGSNAKDPRGMYQCKGSQN   71 (204)
T ss_dssp             SSSEEEEEECS---CSSEEEEEETTEEEEEEES--------S----CCCEEEEEGGGCCEEEEEEESSSS
T ss_pred             CCCeEEEEEcC---CCCEEEEEECCEECCCCCC--------C----CCeEEeCCCCcCCCEEEEEEecCC
Confidence            58899999997   7889999999987653210        0    236889999999999999997653

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.07  E-value=1.1e-09  Score=62.83  Aligned_cols=68  Identities=21%  Similarity=0.329  Sum_probs=51.8

Q ss_pred             CCceEEEEeEeCccCCCeEE-EE--eCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRPHIT-WT--KDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~-w~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.|.|.|.+. |.  +++..+.....     .........+.|.|..+...|.|.|.|.+.|..|.
T Consensus       178 ~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~-----~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~  248 (731)
T 2v5y_A          178 AGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEI-----KVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGV  248 (731)
T ss_dssp             TTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEE-----EECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEE
T ss_pred             CCCcEEEEEEeCCCCCCceeEEEecCCCccccccce-----EEeccccceEEEEEcccccccCeEEEEEEECCCCC
Confidence            58889999999999999887 77  56655543211     11222334568999999999999999999999986

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.07  E-value=3.4e-10  Score=59.34  Aligned_cols=72  Identities=15%  Similarity=0.340  Sum_probs=48.0

Q ss_pred             CCceEEEEeEeCcc-CCC---eEEEEeCC-EEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGF-PRP---HITWTKDD-IELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~---~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+. |.|   .+.|++++ ..+........ ..........+.|.|..+..+|.|.|.|.+.|..+.
T Consensus       127 ~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~-~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~  203 (323)
T 2wqr_A          127 IRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEE-KQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLP  203 (323)
T ss_dssp             TSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEE-ECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS
T ss_pred             cCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCc-cCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCC
Confidence            58889999998886 456   89999965 33322111110 000111223567999999999999999999987643

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.07  E-value=1.4e-09  Score=53.70  Aligned_cols=65  Identities=17%  Similarity=0.255  Sum_probs=45.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.++|.|.+. .+.+.+.|++++..+.......  .  .........|.|.+++.+|+|.|.|.+.+.
T Consensus        21 ~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~--~--~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~   85 (201)
T 1nkr_A           21 SEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIG--E--HHDGVSKANFSISRMTQDLAGTYRCYGSVT   85 (201)
T ss_dssp             TTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEEC--E--EETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCCcEEEEEecc-CCCCEEEEEECCCcCCcceeee--e--cCCCCceEEEEeccCCcccCeEEEEeEecC
Confidence            589999999986 4778999999886543211000  0  011122457999999999999999999653

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.07  E-value=2.9e-09  Score=53.36  Aligned_cols=67  Identities=15%  Similarity=0.256  Sum_probs=46.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--EEe---c---------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--IEL---T---------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.+.|.|.+.+.+.+.+.|++..  ...   .         ...++....     .....+|.|.+++.+|+|.|.|.
T Consensus        38 ~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~  112 (237)
T 3sob_L           38 VGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG-----SGTDFTLTISSLQPEDFATYYCQ  112 (237)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEc-----CCCEEEEEECCCChhhCeEEEEe
Confidence            5899999999998888999998832  110   0         011222110     11245799999999999999999


Q ss_pred             eeCCCc
Q psy11826         68 ADNPFA   73 (83)
Q Consensus        68 ~~~~~g   73 (83)
                      +.+..+
T Consensus       113 ~~~~~~  118 (237)
T 3sob_L          113 QSYTTP  118 (237)
T ss_dssp             ECSSSS
T ss_pred             eccCCc
Confidence            987654

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.07  E-value=1.8e-09  Score=53.47  Aligned_cols=68  Identities=18%  Similarity=0.205  Sum_probs=46.7

Q ss_pred             CCCceEEEEeEeCccC---CCeEEEEeCC--EEec------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeE
Q psy11826          1 MLGRKITFFCMAEGFP---RPHITWTKDD--IELT------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~---~~~~~w~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   63 (83)
                      ..|+.+.|.|.+.+.|   .+.+.|++++  ..+.            ...++....     ......|.|.+++.+|+|.
T Consensus        13 ~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~   87 (212)
T 1q0x_L           13 SPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL-----IGDKAALTITGAQTEDEAI   87 (212)
T ss_dssp             CTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEE
T ss_pred             cCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe-----eCCEEEEEECCCCccCCEE
Confidence            3689999999998877   4789999742  2210            011121111     0113479999999999999


Q ss_pred             EEEEeeCCCc
Q psy11826         64 YECVADNPFA   73 (83)
Q Consensus        64 y~C~~~~~~g   73 (83)
                      |.|.+.+..+
T Consensus        88 Y~C~~~~~~~   97 (212)
T 1q0x_L           88 YFCALWSNNK   97 (212)
T ss_dssp             EEEEEECSSC
T ss_pred             EEEEEecCch
Confidence            9999998765

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=99.07  E-value=2.4e-09  Score=48.20  Aligned_cols=65  Identities=20%  Similarity=0.331  Sum_probs=45.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--EE---ecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--IE---LTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.+.|.|...+.+.+.+.|++..  ..   +..         ..++....     ......|.|.+++.+|+|.|.|.
T Consensus        15 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~   89 (107)
T 1i8k_A           15 TGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG-----TGTDFVFTIENTLSEDVGDYYCL   89 (107)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEc-----cCCEEEEEECCCCHHHCEEEEEE
Confidence            6899999999988878899999742  11   110         11122110     11134799999999999999999


Q ss_pred             eeCC
Q psy11826         68 ADNP   71 (83)
Q Consensus        68 ~~~~   71 (83)
                      +.+.
T Consensus        90 ~~~~   93 (107)
T 1i8k_A           90 QSFN   93 (107)
T ss_dssp             ECSS
T ss_pred             EeeC
Confidence            9875

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.06  E-value=1.5e-10  Score=56.70  Aligned_cols=66  Identities=15%  Similarity=0.253  Sum_probs=46.3

Q ss_pred             CCceEEEEeEeC--ccCCCeEEEEe--CCEEecc----------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAE--GFPRPHITWTK--DDIELTF----------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~--~~~~~~~~w~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.+.|.|...  +.+.+.+.|++  ++..+..          ..+..+.    .    ..+|.|.+++.+|+|.|.|.
T Consensus        13 ~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~----~----ngsL~I~~v~~~DsG~Y~c~   84 (182)
T 1hnf_A           13 LGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF----K----NGTLKIKHLKTDDQDIYKVS   84 (182)
T ss_dssp             TTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC----T----TSCEEECSCCGGGCEEEEEE
T ss_pred             cCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC----C----CCCEEECCCChhhCEEEEEE
Confidence            588899999532  24567899999  7765521          1111111    1    12699999999999999999


Q ss_pred             eeCCCcce
Q psy11826         68 ADNPFAID   75 (83)
Q Consensus        68 ~~~~~g~~   75 (83)
                      +.|..|..
T Consensus        85 ~~n~~g~~   92 (182)
T 1hnf_A           85 IYDTKGKN   92 (182)
T ss_dssp             EEETTSCE
T ss_pred             EEeCCCce
Confidence            99887754

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.06  E-value=1.2e-09  Score=55.37  Aligned_cols=66  Identities=15%  Similarity=0.335  Sum_probs=45.1

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeC--CEEeccc-----------------ceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKD--DIELTFH-----------------KYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~--~~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.|.|.+.+.+  .+.+.|+++  +..+...                 .++.+...   ......+|.|.+++.+|
T Consensus       145 ~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~D  221 (250)
T 3esu_F          145 PGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTAD---KSSSTAYMQLSSLTSVD  221 (250)
T ss_dssp             TTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEE---GGGTEEEEEECSCCGGG
T ss_pred             CCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEec---CCCCeEEEEECCCCccc
Confidence            588999999998876  789999986  3222110                 11111110   11123469999999999


Q ss_pred             CeEEEEEeeC
Q psy11826         61 AGYYECVADN   70 (83)
Q Consensus        61 ~g~y~C~~~~   70 (83)
                      +|.|.|.+.+
T Consensus       222 sG~Y~C~~~~  231 (250)
T 3esu_F          222 SAVYFCARSG  231 (250)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEEec
Confidence            9999999986

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.06  E-value=1.9e-09  Score=56.95  Aligned_cols=70  Identities=20%  Similarity=0.369  Sum_probs=46.4

Q ss_pred             CCCceEEEEeEeCcc--CCCeEEEEeC--CEEec-----------------ccceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGF--PRPHITWTKD--DIELT-----------------FHKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~--~~~~~~w~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      ..|+.+.|.|.+.+.  +.+.+.|+++  +..+.                 ...++.+...   .......|.|.+++.+
T Consensus        13 ~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~v~~~   89 (344)
T 1za6_B           13 KPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTAD---TSASTAYVELSSLRSE   89 (344)
T ss_dssp             CTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEE---TTTTEEEEEECSCCGG
T ss_pred             eCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEe---cCCCEEEEEECCCCcc
Confidence            368999999998876  3678999985  32211                 0111221110   1112357999999999


Q ss_pred             CCeEEEEEeeCCCc
Q psy11826         60 DAGYYECVADNPFA   73 (83)
Q Consensus        60 ~~g~y~C~~~~~~g   73 (83)
                      |+|.|.|.+.+..+
T Consensus        90 D~G~Y~C~~~n~~~  103 (344)
T 1za6_B           90 DTAVYFCTRSLNMA  103 (344)
T ss_dssp             GCEEEEEEETTTTC
T ss_pred             cCEEEEEEEecCcc
Confidence            99999999988543

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=99.06  E-value=2.4e-09  Score=49.24  Aligned_cols=65  Identities=18%  Similarity=0.347  Sum_probs=45.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--EE---ecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--IE---LTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.+.|.|.+.+.+.+.+.|++..  ..   +..         ..++....     .....+|.|.+++.+|+|.|.|.
T Consensus        15 ~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~   89 (120)
T 1mqk_L           15 VGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG-----SGTQFSLKINSLLPEDFGSYYCQ   89 (120)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEec-----cCCEEEEEECCCCHHHCEEEEEE
Confidence            6899999999988878899999842  21   110         11222110     01135799999999999999999


Q ss_pred             eeCC
Q psy11826         68 ADNP   71 (83)
Q Consensus        68 ~~~~   71 (83)
                      +.+.
T Consensus        90 ~~~~   93 (120)
T 1mqk_L           90 HHYG   93 (120)
T ss_dssp             ECSS
T ss_pred             EEeC
Confidence            9875

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.06  E-value=3.2e-10  Score=56.57  Aligned_cols=75  Identities=15%  Similarity=0.296  Sum_probs=49.7

Q ss_pred             CCceEEEEeEeCc-cCC-C-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAEG-FPR-P-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~-~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      .|+.+.|.|.+.+ .|. + .+.|++++..+...................+.|.|......|.|.|.|.+.+..+...
T Consensus       137 ~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~~  214 (221)
T 3m8o_H          137 PDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQ  214 (221)
T ss_dssp             CTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred             cCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCce
Confidence            5788999999988 665 3 8999998865532110000000111223345799999999999999999998876543

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=99.06  E-value=4.4e-09  Score=47.84  Aligned_cols=66  Identities=15%  Similarity=0.225  Sum_probs=44.6

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeC--CEEe----cccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKD--DIEL----TFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      +|+.+.|.|...+.+  .+.+.|++.  +...    ....++.....   .......|.|.+++.+|+|.|.|.+.+
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (113)
T 1sq2_N           14 TGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVN---SGSKSFSLRINDLTVEDGGTYRCGLGV   87 (113)
T ss_dssp             TTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEE---TTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred             cCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceEeEEeCCCEEEEEe---CCCCEEEEEECCCChhhCEEEEEEEEe
Confidence            689999999987655  568999974  2211    11122322111   112245799999999999999999987

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.06  E-value=2.9e-09  Score=54.02  Aligned_cols=67  Identities=16%  Similarity=0.320  Sum_probs=46.3

Q ss_pred             CCceEEEEeEeCccC-----CCeEEEEeC--CEEec------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCe
Q psy11826          2 LGRKITFFCMAEGFP-----RPHITWTKD--DIELT------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG   62 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~-----~~~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   62 (83)
                      .|+.+.|.|.+.+.+     .+.+.|+++  +..+.            ...++....     ......|.|.+++.+|.|
T Consensus        52 ~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G  126 (254)
T 2c1o_A           52 IGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSG-----SGTDFTLKISRVEAEDLG  126 (254)
T ss_dssp             TTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCS
T ss_pred             CCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEec-----CCCEEEEEECcCCcccCE
Confidence            689999999998887     488999973  22110            011222111     011347999999999999


Q ss_pred             EEEEEeeCCCc
Q psy11826         63 YYECVADNPFA   73 (83)
Q Consensus        63 ~y~C~~~~~~g   73 (83)
                      .|.|.+.+..+
T Consensus       127 ~Y~C~a~n~~~  137 (254)
T 2c1o_A          127 IYYCVQGSHFP  137 (254)
T ss_dssp             EEEEEECSSSS
T ss_pred             EEEEEEEcCcc
Confidence            99999998754

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.06  E-value=9.6e-10  Score=54.87  Aligned_cols=76  Identities=20%  Similarity=0.290  Sum_probs=49.1

Q ss_pred             CCceEEEEeEeCccCC-CeEEEEeCCEE-----ecc----cceEEEEEEe----------cCCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGFPR-PHITWTKDDIE-----LTF----HKYFQVHEWF----------LGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~-~~~~w~~~~~~-----~~~----~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~~~   61 (83)
                      .|+.+.|.|.+.+.+. +.+.|++++..     +..    ...... ...          ...   ...|.|.+++.+|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~   89 (231)
T 2pet_A           14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQV-TMHDTRGRSPPYQLDS---QGRLVLAEAQVGDE   89 (231)
T ss_dssp             TTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEE-EECCCSCCSSCCEECT---TCCEEESSCCGGGC
T ss_pred             cCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCcccc-ccccccccccccccCC---CceEEEcccCcccC
Confidence            5889999999988885 88999975432     110    000100 000          011   12399999999999


Q ss_pred             eEEEEEeeCCC-cceeeEEEE
Q psy11826         62 GYYECVADNPF-AIDRRGFRT   81 (83)
Q Consensus        62 g~y~C~~~~~~-g~~~~~~~~   81 (83)
                      |.|.|.+.+.. +.....+.|
T Consensus        90 G~Y~C~~~~~~~~~~~~~~~l  110 (231)
T 2pet_A           90 RDYVCVVRAGAAGTAEATARL  110 (231)
T ss_dssp             EEEEEEEECGGGCEEEEEEEE
T ss_pred             ceEEEEEEecCCCceEEEEEE
Confidence            99999999876 555444433

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.05  E-value=2e-09  Score=54.92  Aligned_cols=69  Identities=12%  Similarity=0.138  Sum_probs=46.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--EEe---cc----------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--IEL---TF----------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC   66 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~~~---~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C   66 (83)
                      +|+.+.|.|.+.+.+.+.+.|++..  ...   ..          ..++....   .......+|.|.+++.+|+|.|.|
T Consensus        17 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~I~~v~~~DsG~Y~C   93 (256)
T 3tf7_C           17 EGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEF---SKSDSSFHLRKASVHRSDSAVYFC   93 (256)
T ss_dssp             TTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEE---ETTTTEEEEEESSCCGGGCSEEEE
T ss_pred             CCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEE---cCCCCEEEEEECCCCcccCEEEEE
Confidence            5899999999988899999999732  111   00          01111100   011124579999999999999999


Q ss_pred             EeeCCCc
Q psy11826         67 VADNPFA   73 (83)
Q Consensus        67 ~~~~~~g   73 (83)
                      .+.+..+
T Consensus        94 ~~~~~~~  100 (256)
T 3tf7_C           94 AVSAKGT  100 (256)
T ss_dssp             EEECTTC
T ss_pred             EEecCCC
Confidence            9988654

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.05  E-value=1.6e-09  Score=53.89  Aligned_cols=68  Identities=18%  Similarity=0.379  Sum_probs=46.0

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeC--CEEecc-----------------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKD--DIELTF-----------------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.|.|.+.+.+  .+.+.|+++  +..+..                 ..++.....   ......+|.|.+++.+|
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~v~~~D   90 (219)
T 1c1e_H           14 PGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLE---TSATTAYLQINNLKNED   90 (219)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEE---GGGTEEEEEECSCCGGG
T ss_pred             CCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEe---cCCCEEEEEECCCCccc
Confidence            689999999988765  678999985  322110                 011111110   01113579999999999


Q ss_pred             CeEEEEEeeCCC
Q psy11826         61 AGYYECVADNPF   72 (83)
Q Consensus        61 ~g~y~C~~~~~~   72 (83)
                      +|.|.|.+.+..
T Consensus        91 ~G~Y~C~~~~~~  102 (219)
T 1c1e_H           91 MATYFCARGTTI  102 (219)
T ss_dssp             CEEEEEEEEETT
T ss_pred             CEEEEEEEeccC
Confidence            999999998865

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.04  E-value=4.3e-09  Score=53.51  Aligned_cols=67  Identities=18%  Similarity=0.395  Sum_probs=45.5

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeC--CEEecc-----------------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKD--DIELTF-----------------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.|.|.+.+.+  .+.+.|+++  +..+..                 ..++.+...   .......|.|.+++.+|
T Consensus       148 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~D  224 (256)
T 3ux9_B          148 PGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRD---NSKNTLYLQMNSLRAED  224 (256)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEE---TTTTEEEEEECSCCGGG
T ss_pred             CCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEec---CCCCEEEEEECCCChhh
Confidence            588999999998766  789999985  321110                 012222111   11223469999999999


Q ss_pred             CeEEEEEeeCC
Q psy11826         61 AGYYECVADNP   71 (83)
Q Consensus        61 ~g~y~C~~~~~   71 (83)
                      +|.|.|.+.+.
T Consensus       225 sG~Y~C~~~~~  235 (256)
T 3ux9_B          225 TAVYYCARYID  235 (256)
T ss_dssp             CEEEEEEEEET
T ss_pred             CEEEEEEEEcC
Confidence            99999999885

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.04  E-value=4.7e-10  Score=55.15  Aligned_cols=73  Identities=19%  Similarity=0.251  Sum_probs=47.7

Q ss_pred             CCceEEEEeEeC----ccCCCeEEEEeCCEEecccceEEEEEE--ecCC----CeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAE----GFPRPHITWTKDDIELTFHKYFQVHEW--FLGN----NTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~----~~~~~~~~w~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.+.|.|.+.    +.|.+.+.|.+++..+...........  ....    .....+|.|.+++.+|+|.|.|.+.+.
T Consensus         8 ~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   87 (201)
T 1dr9_A            8 VKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKY   87 (201)
T ss_dssp             TTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEEEEEC
T ss_pred             eCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEEEEEcC
Confidence            689999999974    446789999999876531100000000  0000    001247999999999999999999987


Q ss_pred             Ccc
Q psy11826         72 FAI   74 (83)
Q Consensus        72 ~g~   74 (83)
                      .|.
T Consensus        88 ~g~   90 (201)
T 1dr9_A           88 EKD   90 (201)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            654

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.04  E-value=7.1e-10  Score=53.86  Aligned_cols=72  Identities=13%  Similarity=0.173  Sum_probs=48.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecc--cceEEEEE-------EecCC---CeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTF--HKYFQVHE-------WFLGN---NTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~-------~~~~~---~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++.....  ........       .....   .....+|.|.+++.+|.|.|.|.+.
T Consensus         9 ~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~   88 (184)
T 2ny1_B            9 KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVE   88 (184)
T ss_dssp             TTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEEET
T ss_pred             CCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEEEEEEE
Confidence            689999999998889999999998753111  00000000       00000   1113459999999999999999998


Q ss_pred             CCCc
Q psy11826         70 NPFA   73 (83)
Q Consensus        70 ~~~g   73 (83)
                      +..+
T Consensus        89 ~~~~   92 (184)
T 2ny1_B           89 DQKE   92 (184)
T ss_dssp             TEEE
T ss_pred             cCCC
Confidence            8755

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=99.04  E-value=4.7e-10  Score=50.98  Aligned_cols=73  Identities=15%  Similarity=0.271  Sum_probs=44.5

Q ss_pred             CCceEEEEeEeCc-cCCCeEEEEeCCEE--------eccc-ceEEEE---EEec--CCCeEEEEEEEccCCCCCCeEEEE
Q psy11826          2 LGRKITFFCMAEG-FPRPHITWTKDDIE--------LTFH-KYFQVH---EWFL--GNNTIKSKMEIDPATQKDAGYYEC   66 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~~~~w~~~~~~--------~~~~-~~~~~~---~~~~--~~~~~~~~l~i~~~~~~~~g~y~C   66 (83)
                      .|+.+.|.|.... .....+.|++....        +... ......   ....  .......+|.|.+++.+|+|.|.|
T Consensus        11 ~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C   90 (116)
T 2or8_A           11 VGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDSGLYCC   90 (116)
T ss_dssp             TTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGCEEEEE
T ss_pred             eCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCcccCEEEEE
Confidence            6899999999765 34567999986521        0000 000000   0000  001123469999999999999999


Q ss_pred             EeeCCCcc
Q psy11826         67 VADNPFAI   74 (83)
Q Consensus        67 ~~~~~~g~   74 (83)
                      .+.+..+.
T Consensus        91 ~v~~~~~~   98 (116)
T 2or8_A           91 RVEIPGWF   98 (116)
T ss_dssp             EECCSSTT
T ss_pred             EEEcCCcc
Confidence            99886543

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.04  E-value=1.3e-09  Score=55.72  Aligned_cols=69  Identities=19%  Similarity=0.258  Sum_probs=47.7

Q ss_pred             CCceEEEEeEeCc-cCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEc---cCCCCCCeE--EEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEG-FPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEID---PATQKDAGY--YECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~~~g~--y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+ .|.|  .+.|++++..+....    ..   ...    .+.+.   .++.+|.|.  |.|.+.|..+
T Consensus        17 ~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~~----~~---~~~----~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~   85 (265)
T 2oz4_A           17 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV----TY---GND----SFSAKASVSVTAEDEGTQRLTCAVILGNQ   85 (265)
T ss_dssp             TTEEEEEEEEEESCSCGGGCEEEEEETTEECCCEE----EE---CSS----EEEEEEEEEECGGGCEEEEEEEEEEETTE
T ss_pred             cCCCEEEEEEccCCCCCcceEEEEEeCCEECCceE----ee---CCC----eEEEEeecccccccCCcceEEEEEecCCC
Confidence            5899999999988 7777  999999998776421    00   111    22222   346778775  9999999888


Q ss_pred             ceeeEEEE
Q psy11826         74 IDRRGFRT   81 (83)
Q Consensus        74 ~~~~~~~~   81 (83)
                      .......|
T Consensus        86 ~~~~~~~l   93 (265)
T 2oz4_A           86 SQETLQTV   93 (265)
T ss_dssp             EEEEEEEE
T ss_pred             CcEEEEEE
Confidence            76555444

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=99.04  E-value=7e-09  Score=46.81  Aligned_cols=68  Identities=18%  Similarity=0.341  Sum_probs=44.6

Q ss_pred             CCceEEEEeEeCccC-CCeEEEEeCCEE--ec-----------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFP-RPHITWTKDDIE--LT-----------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~-~~~~~w~~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|...... .+.+.|++....  ..           ...++....   ........|.|.+++.+|+|.|.|.
T Consensus        10 ~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I~~~~~~DsG~Y~C~   86 (110)
T 2q87_A           10 VGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRD---SPANLSFTVTLENLTEEDAGTYWCG   86 (110)
T ss_dssp             TTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEE---EGGGTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEE---cCcCCEEEEEEccCCHHHCEEEEEE
Confidence            689999999976543 468999985321  10           001111111   0111245799999999999999999


Q ss_pred             eeCCC
Q psy11826         68 ADNPF   72 (83)
Q Consensus        68 ~~~~~   72 (83)
                      +.+..
T Consensus        87 ~~~~~   91 (110)
T 2q87_A           87 VDTPW   91 (110)
T ss_dssp             EECTT
T ss_pred             EecCc
Confidence            98874

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=99.03  E-value=1.2e-09  Score=50.24  Aligned_cols=65  Identities=23%  Similarity=0.374  Sum_probs=45.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--E---Eecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--I---ELTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~---~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.+.|.|.+.+.+.+.+.|++..  .   .+..         ..++....     ......|.|.+++.+|+|.|.|.
T Consensus        17 ~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~   91 (119)
T 2e27_L           17 LGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSG-----SGRDYSFSISNLEPEDAATYYCL   91 (119)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEc-----cCCEEEEEECCCChHHCEEEEEE
Confidence            5899999999988888899999742  1   1110         11122110     11135799999999999999999


Q ss_pred             eeCC
Q psy11826         68 ADNP   71 (83)
Q Consensus        68 ~~~~   71 (83)
                      +.+.
T Consensus        92 ~~~~   95 (119)
T 2e27_L           92 QYDN   95 (119)
T ss_dssp             ECGG
T ss_pred             EccC
Confidence            9864

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.03  E-value=2.4e-09  Score=54.25  Aligned_cols=67  Identities=24%  Similarity=0.373  Sum_probs=46.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCE-----Eec---------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDI-----ELT---------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.+.|.|.+.+.|.+.+.|++...     .+.         ...++....     .....+|.|.+++.+|+|.|.|.
T Consensus        18 ~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~   92 (250)
T 3esu_F           18 LGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSG-----SGTDYSLTISNLEQEDIGTYFCQ   92 (250)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeC-----CCCEEEEEEccCChhhCEEEEEE
Confidence            68999999999999999999998421     110         011111110     01134799999999999999999


Q ss_pred             eeCCCc
Q psy11826         68 ADNPFA   73 (83)
Q Consensus        68 ~~~~~g   73 (83)
                      +.+..+
T Consensus        93 ~~n~~~   98 (250)
T 3esu_F           93 QGNTLP   98 (250)
T ss_dssp             ECSSSS
T ss_pred             EeeCCC
Confidence            988644

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.03  E-value=3.8e-10  Score=57.02  Aligned_cols=72  Identities=14%  Similarity=0.230  Sum_probs=49.0

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEE------ecCCCeEEEEEEEccCCCCC-CeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEW------FLGNNTIKSKMEIDPATQKD-AGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~g   73 (83)
                      |+.+.|.|.+.+.+++  .+.|++++..+...........      ........+.|.|......| .|.|.|.+.|...
T Consensus       140 g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~  219 (246)
T 4dzb_B          140 TQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  219 (246)
T ss_dssp             HSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             CCcEEEEEEEccCcCCceEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCC
Confidence            7889999999887654  7999999988765321110000      01122334568888888888 8999999998654


Q ss_pred             c
Q psy11826         74 I   74 (83)
Q Consensus        74 ~   74 (83)
                      .
T Consensus       220 ~  220 (246)
T 4dzb_B          220 S  220 (246)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.03  E-value=2.2e-09  Score=53.06  Aligned_cols=72  Identities=18%  Similarity=0.166  Sum_probs=46.6

Q ss_pred             CceEEEEeE-eCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          3 GRKITFFCM-AEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         3 g~~~~~~C~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      +..+.+.|. ..+.|++.+.|++++.........  .....+.....+.|.|..+...|.|.|+|.+.|..+...
T Consensus       136 ~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~  208 (225)
T 4fmk_A          136 QSVAVARCVSTGGRPPARITWISSLGGEAKDTQE--PGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEP  208 (225)
T ss_dssp             SCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEE--ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSC
T ss_pred             eeeeeeeeeecCCCCCCEEEEEECCccccCCcce--EEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeE
Confidence            445555565 456788899999876544322111  011112223356799999999999999999999877643

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.03  E-value=4.2e-10  Score=56.54  Aligned_cols=74  Identities=20%  Similarity=0.430  Sum_probs=46.8

Q ss_pred             CCceEEEEeEeCcc-CCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeE
Q psy11826          2 LGRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG   78 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~   78 (83)
                      .|+.+.|.|.+.+. |.| .+.|++++..+.........  ........+.|.|..+...| |.|.|.+.|..+.....
T Consensus       135 ~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~--~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  210 (227)
T 1mju_H          135 SGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVL--QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVD  210 (227)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEE--ETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred             CCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECCcee--cCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceE
Confidence            47889999999885 766 89999987654211000000  01112234679998888877 99999999977654433

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.03  E-value=7.7e-10  Score=54.48  Aligned_cols=71  Identities=10%  Similarity=0.088  Sum_probs=46.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEE-----EEecC--CCe----EEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVH-----EWFLG--NNT----IKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~-----~~~~~--~~~----~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      .|+.+.|.|...+.+.+.+.|++++.......-....     .....  ..+    ...+|.|.+++.+|.|.|.|.+.+
T Consensus        13 ~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~~   92 (208)
T 3r4d_A           13 EDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTD   92 (208)
T ss_dssp             TTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEEEEEEC
T ss_pred             cCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEEEEEEc
Confidence            6899999999888888999999865422211100000     00000  000    012699999999999999999998


Q ss_pred             CC
Q psy11826         71 PF   72 (83)
Q Consensus        71 ~~   72 (83)
                      ..
T Consensus        93 ~~   94 (208)
T 3r4d_A           93 EN   94 (208)
T ss_dssp             SS
T ss_pred             cc
Confidence            75

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.03  E-value=1.8e-09  Score=56.07  Aligned_cols=70  Identities=23%  Similarity=0.330  Sum_probs=50.7

Q ss_pred             CCceEEEEeEe-CccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.+.|.. .+.|.|.+.|++++..+.....    ..........+.|.|..+...|.|.|.|.+.|..+..
T Consensus       128 ~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~----~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~  198 (308)
T 4fom_A          128 GNETVAAICIAATGKPVAHIDWEGDLGEMESTTT----SFPNETATIISQYKLFPTRFARGRRITCVVKHPALEK  198 (308)
T ss_dssp             CSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEE----ECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSS
T ss_pred             CCceEEEEEEecCCcCCceEEEEECCcccccccc----eeeeecccccccceEEeeeecCCccEEEEEEccCCCC
Confidence            36788999974 6889999999998876643211    1111222334579999999999999999999977654

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.02  E-value=2.7e-10  Score=57.48  Aligned_cols=73  Identities=16%  Similarity=0.181  Sum_probs=47.4

Q ss_pred             CCceEEEEeEeCc---cCCCeEEEEeCCEEecccceEE------------------EEEEecCCCe------EEEEEEEc
Q psy11826          2 LGRKITFFCMAEG---FPRPHITWTKDDIELTFHKYFQ------------------VHEWFLGNNT------IKSKMEID   54 (83)
Q Consensus         2 ~g~~~~~~C~~~~---~~~~~~~w~~~~~~~~~~~~~~------------------~~~~~~~~~~------~~~~l~i~   54 (83)
                      +|+.+.|.|.+.+   .+.+.+.|++++..........                  .........+      ....|.|.
T Consensus        16 ~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~   95 (250)
T 2fbo_J           16 AGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLT   95 (250)
T ss_dssp             TTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTTSCCEEEC
T ss_pred             cCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCCcceEEEe
Confidence            6899999999877   7888999998764321000000                  0000000000      12369999


Q ss_pred             cCCCCCCeEEEEEeeCCCcc
Q psy11826         55 PATQKDAGYYECVADNPFAI   74 (83)
Q Consensus        55 ~~~~~~~g~y~C~~~~~~g~   74 (83)
                      +++.+|.|.|.|.+.+..+.
T Consensus        96 ~v~~~D~G~Y~C~~~~~~~~  115 (250)
T 2fbo_J           96 HVHPQDGGRYWCQVAQWSIR  115 (250)
T ss_dssp             SCCGGGCEEEEEEEECTTCC
T ss_pred             eCChhhCeEEEEEeccCccC
Confidence            99999999999999987664

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.02  E-value=2.3e-09  Score=54.21  Aligned_cols=67  Identities=19%  Similarity=0.444  Sum_probs=45.4

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeCC--EEe--c---------------ccceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKDD--IEL--T---------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~~--~~~--~---------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.|.|.+.+.|  .+.+.|++..  ...  .               ...++.+...   ......+|.|.+++.+|
T Consensus        16 ~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~D   92 (247)
T 2ghw_B           16 PGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRD---NSKNTLYLQMNSLRAED   92 (247)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEE---TTTTEEEEEECSCCGGG
T ss_pred             cCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEe---CCCCEEEEEECcCCHHH
Confidence            689999999998877  6789999732  111  0               0112222111   11123579999999999


Q ss_pred             CeEEEEEeeCC
Q psy11826         61 AGYYECVADNP   71 (83)
Q Consensus        61 ~g~y~C~~~~~   71 (83)
                      +|.|.|.+.+.
T Consensus        93 ~G~Y~C~~~n~  103 (247)
T 2ghw_B           93 TAVYYCARDRS  103 (247)
T ss_dssp             CEEEEEEEEET
T ss_pred             CEEEEEeeecc
Confidence            99999999886

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.02  E-value=7.3e-10  Score=53.69  Aligned_cols=59  Identities=12%  Similarity=0.028  Sum_probs=43.6

Q ss_pred             EEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          7 TFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         7 ~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|.|.+.+.|.|.+.|++++..+......              .+.+.  ...|.|.|.|.+.|..+.......|
T Consensus       109 ~L~C~~~~~p~p~i~W~~~~~~l~~~~~~--------------~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          109 TLTCEVLEGTDVELKLYQGKEHLRSLRQK--------------TMSYQ--WTNLRAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             EEEEECSSCSSCEEEEEETTEEEEEESSS--------------EEEEE--CSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             EEEEEeCCCCCcEEEEEECCEECcCCcce--------------EEEEe--ccCCCceEEEEEEcccCcccceeEE
Confidence            58999988899999999999877633211              22222  3678899999999999887665543

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.02  E-value=6.4e-09  Score=52.84  Aligned_cols=67  Identities=15%  Similarity=0.291  Sum_probs=46.2

Q ss_pred             CCceEEEEeEeCccC-----CCeEEEEeCC--EEe---cc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCe
Q psy11826          2 LGRKITFFCMAEGFP-----RPHITWTKDD--IEL---TF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAG   62 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~-----~~~~~w~~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   62 (83)
                      .|+.+.|.|.+.+.+     .+.+.|++++  ...   ..         ..++....     ......|.|.+++.+|.|
T Consensus        48 ~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G  122 (252)
T 3bkj_L           48 LGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSG-----SGTDFTLRISRVEAEDLG  122 (252)
T ss_dssp             TTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred             CCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEc-----cCCEEEEEECCCCcccCE
Confidence            689999999998887     6889999843  111   00         11111111     011347999999999999


Q ss_pred             EEEEEeeCCCc
Q psy11826         63 YYECVADNPFA   73 (83)
Q Consensus        63 ~y~C~~~~~~g   73 (83)
                      .|.|.+.+..+
T Consensus       123 ~Y~C~~~~~~~  133 (252)
T 3bkj_L          123 VYYCFQASLVP  133 (252)
T ss_dssp             EEEEEECSBSS
T ss_pred             EEEEEEEcCCc
Confidence            99999988754

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.02  E-value=1.8e-09  Score=52.96  Aligned_cols=59  Identities=15%  Similarity=0.152  Sum_probs=43.2

Q ss_pred             eEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          5 KITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         5 ~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .+.|.|.+.+.|.|.+.|++++..+ ....              ..+.+. ...+|.|.|.|.+.|..+......
T Consensus       117 ~v~L~C~~~~~p~~~~~W~~~g~~l-~~~~--------------~~i~~~-~~~~d~G~Y~C~a~N~~~~~~s~~  175 (182)
T 1hnf_A          117 NTTLTCEVMNGTDPELNLYQDGKHL-KLSQ--------------RVITHK-WTTSLSAKFKCTAGNKVSKESSVE  175 (182)
T ss_dssp             TTEEEEECSSCSSCEEEEEESSCEE-EEES--------------SCEEEE-CCSCEEEEEEEEEECSSCEEEEEE
T ss_pred             cEEEEeEccCCCCCEEEEEECCEEC-CCCC--------------cEEEEe-cccCCCcEEEEEEEeCCCCcEEcc
Confidence            4678999999899999999999876 1110              112222 246889999999999999876544

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.01  E-value=5.4e-10  Score=56.99  Aligned_cols=72  Identities=18%  Similarity=0.224  Sum_probs=41.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CEEecccceEE------EEEE--------ecCCCeEEEEEEEccCCCCCCeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DIELTFHKYFQ------VHEW--------FLGNNTIKSKMEIDPATQKDAGYYE   65 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~~~~~~~~~~------~~~~--------~~~~~~~~~~l~i~~~~~~~~g~y~   65 (83)
                      +|+.+.|.|.+.+.+.+.+.|++.  +..........      ....        .........+|.|.+++.+|+|.|.
T Consensus        16 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~   95 (259)
T 3omz_A           16 TGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIENDSGVYY   95 (259)
T ss_dssp             TTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCGGGCEEEE
T ss_pred             CCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCcccCEEEE
Confidence            589999999998888899999972  21110000000      0000        0001112346999999999999999


Q ss_pred             EEeeCCCc
Q psy11826         66 CVADNPFA   73 (83)
Q Consensus        66 C~~~~~~g   73 (83)
                      |.+.+..+
T Consensus        96 C~~~~~~~  103 (259)
T 3omz_A           96 CATWDQNY  103 (259)
T ss_dssp             EEEECTTS
T ss_pred             EEEeeCCc
Confidence            99988654

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.01  E-value=6.4e-09  Score=53.12  Aligned_cols=69  Identities=19%  Similarity=0.387  Sum_probs=46.6

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeC--CEEec-----------------ccceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKD--DIELT-----------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.|.|.+.+.|  .+.+.|++.  +..+.                 ...++.+...   ......+|.|.+++.+|
T Consensus        14 ~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~v~~~D   90 (256)
T 1nqb_A           14 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVD---KPSSTAYMQLSSLTSED   90 (256)
T ss_dssp             TTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEE---TTTTEEEEEECSCCGGG
T ss_pred             CCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEe---cCCCEEEEEECcCChhh
Confidence            689999999998875  678999983  22110                 0111221110   01113579999999999


Q ss_pred             CeEEEEEeeCCCc
Q psy11826         61 AGYYECVADNPFA   73 (83)
Q Consensus        61 ~g~y~C~~~~~~g   73 (83)
                      +|.|.|.+.+..|
T Consensus        91 sG~Y~C~~~n~~g  103 (256)
T 1nqb_A           91 SAVYYCARYDYYG  103 (256)
T ss_dssp             CEEEEEEECCTTS
T ss_pred             CEEEEEEEeeccC
Confidence            9999999998755

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.01  E-value=2.6e-10  Score=57.70  Aligned_cols=80  Identities=15%  Similarity=0.206  Sum_probs=49.8

Q ss_pred             CCceEEEEeEeCccCCCe-----EEEEeCCEEecccceE------EEEEEecCC-------CeEEEEEEEccCCCCCCeE
Q psy11826          2 LGRKITFFCMAEGFPRPH-----ITWTKDDIELTFHKYF------QVHEWFLGN-------NTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~-----~~w~~~~~~~~~~~~~------~~~~~~~~~-------~~~~~~l~i~~~~~~~~g~   63 (83)
                      .|+.+.|.|.+.+.|.+.     +.|++++.........      .........       .....+|.|.+++.+|+|.
T Consensus        17 ~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D~G~   96 (248)
T 3pv7_A           17 LNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGE   96 (248)
T ss_dssp             TTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCGGGCEE
T ss_pred             CCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCHHHCeE
Confidence            589999999998887765     9999853221110000      000000000       0112359999999999999


Q ss_pred             EEEEeeCCCcceeeEEEE
Q psy11826         64 YECVADNPFAIDRRGFRT   81 (83)
Q Consensus        64 y~C~~~~~~g~~~~~~~~   81 (83)
                      |.|.+.+..+.......|
T Consensus        97 Y~C~~~~~~~~~~~~~~L  114 (248)
T 3pv7_A           97 YRCEVVVTPLKAQGTVQL  114 (248)
T ss_dssp             EEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEeCCccceeEEEE
Confidence            999999877665544443

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.01  E-value=7.4e-09  Score=53.34  Aligned_cols=67  Identities=16%  Similarity=0.295  Sum_probs=47.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCE-----Eecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDI-----ELTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~-----~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.+.|.|.+.+.|.+.+.|++++.     .+..         ..++....     .....+|.|.+++.+|+|.|.|.
T Consensus        26 ~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~  100 (276)
T 3auv_A           26 VGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG-----SGTDFTLTISSLQPEDFATYYCQ  100 (276)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEec-----cCCeEEEEEccCChhhCEEEEEE
Confidence            68999999999999999999997431     1110         11121111     01134799999999999999999


Q ss_pred             eeCCCc
Q psy11826         68 ADNPFA   73 (83)
Q Consensus        68 ~~~~~g   73 (83)
                      +.+..+
T Consensus       101 ~~n~~~  106 (276)
T 3auv_A          101 QHYTTP  106 (276)
T ss_dssp             ECSSSS
T ss_pred             EecCCc
Confidence            988644

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=99.01  E-value=2.8e-09  Score=48.05  Aligned_cols=75  Identities=11%  Similarity=0.156  Sum_probs=45.0

Q ss_pred             CCceEEEEeEeCccCCC-----eEEEEeCCEE-e-cccceEEEEEEecC--CCe-----EEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRP-----HITWTKDDIE-L-TFHKYFQVHEWFLG--NNT-----IKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-----~~~w~~~~~~-~-~~~~~~~~~~~~~~--~~~-----~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.+.|.|...+.|.+     .+.|++.+.. + ..............  ..+     ...+|.|.+++.+|+|.|.|.
T Consensus         8 ~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~Y~C~   87 (110)
T 1ncn_A            8 FNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLYQCI   87 (110)
T ss_dssp             TTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEEEEEE
T ss_pred             eCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEECCCEEEEEcCCChHHCEEEEEE
Confidence            58999999998655433     4899986531 1 00000000000000  000     024799999999999999999


Q ss_pred             eeCCCccee
Q psy11826         68 ADNPFAIDR   76 (83)
Q Consensus        68 ~~~~~g~~~   76 (83)
                      +.+..+...
T Consensus        88 v~~~~~~~~   96 (110)
T 1ncn_A           88 IHHKKPTGM   96 (110)
T ss_dssp             EEEECSSSE
T ss_pred             EEcCCCCce
Confidence            988766543

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.00  E-value=3.6e-09  Score=52.39  Aligned_cols=68  Identities=12%  Similarity=0.280  Sum_probs=45.1

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEeC--CEEec----------------ccceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTKD--DIELT----------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      ..|+.+.|.|.+.+.+  .+.+.|+++  +....                ...++.+...   ......+|.|.+++.+|
T Consensus        13 ~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~D   89 (210)
T 3d9a_H           13 KPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRD---TSKNQYYLDLNSVTTED   89 (210)
T ss_dssp             CTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEE---GGGTEEEEEECSCCGGG
T ss_pred             cCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEec---CCCCEEEEEECCCCccc
Confidence            3689999999988765  478999874  22111                0112221110   01113579999999999


Q ss_pred             CeEEEEEeeCC
Q psy11826         61 AGYYECVADNP   71 (83)
Q Consensus        61 ~g~y~C~~~~~   71 (83)
                      +|.|.|.+.+.
T Consensus        90 ~G~Y~C~~~~~  100 (210)
T 3d9a_H           90 TATYYCANWDG  100 (210)
T ss_dssp             CEEEEEEETTS
T ss_pred             CEEEEEEEecC
Confidence            99999999885

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=99.00  E-value=3.2e-09  Score=47.91  Aligned_cols=67  Identities=15%  Similarity=0.284  Sum_probs=44.0

Q ss_pred             CCceEEEEeE-eCccC-CCeEEEEeCCEEec---c---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCM-AEGFP-RPHITWTKDDIELT---F---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~-~~~~~-~~~~~w~~~~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.+.|.|. ..+.+ .+.+.|++......   .         ..++.....   .......|.|.+++.+|+|.|.|.
T Consensus        14 ~G~~v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~v~~~DsG~Y~C~   90 (109)
T 1pew_A           14 PGKTVTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSID---RSSNSASLTISGLKTEDEADYYCQ   90 (109)
T ss_dssp             TTSCEEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEE---TTTTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEec---cCCCEEEEEECCCChhhCEEEEEE
Confidence            6899999999 76654 47899998652110   0         112222110   112245799999999999999999


Q ss_pred             eeCC
Q psy11826         68 ADNP   71 (83)
Q Consensus        68 ~~~~   71 (83)
                      +.+.
T Consensus        91 ~~~~   94 (109)
T 1pew_A           91 SYDA   94 (109)
T ss_dssp             EEET
T ss_pred             EEeC
Confidence            9764

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=99.00  E-value=1.4e-08  Score=45.93  Aligned_cols=65  Identities=15%  Similarity=0.305  Sum_probs=44.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--E---Eecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--I---ELTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~---~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|...+.+.+.+.|++..  .   .+..         ..++....     ......|.|.+++.+|+|.|.|.
T Consensus        18 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~   92 (111)
T 1i3g_L           18 VGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSG-----SGTDFTLTISNVQSEDLADYFCQ   92 (111)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCSEEEEE
T ss_pred             CCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEc-----CCCEEEEEECCCCHHHCEEEEEE
Confidence            6899999999888777889999743  1   1110         11111110     11135799999999999999999


Q ss_pred             eeCC
Q psy11826         68 ADNP   71 (83)
Q Consensus        68 ~~~~   71 (83)
                      +.+.
T Consensus        93 ~~~~   96 (111)
T 1i3g_L           93 QYSS   96 (111)
T ss_dssp             ECSS
T ss_pred             EecC
Confidence            9875

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=99.00  E-value=8.6e-10  Score=51.12  Aligned_cols=70  Identities=21%  Similarity=0.309  Sum_probs=43.5

Q ss_pred             CCceEEEEeEeCcc-CCCeEEEEeCCEE----eccc-----ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGF-PRPHITWTKDDIE----LTFH-----KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~~~~w~~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.++|.|...+. +.+.+.|++.+..    +...     .+................|.|.+++.+|+|.|.|.+.+.
T Consensus        17 ~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   96 (127)
T 2jju_A           17 AGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRK   96 (127)
T ss_dssp             TTSCEEECCEESCCCSCCCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCGGGCEEEEEEEEEC
T ss_pred             CCCCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCHHHCEEEEEEEEcC
Confidence            58999999998765 5678999986511    1000     011110000000111347999999999999999998764

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.00  E-value=7e-10  Score=56.32  Aligned_cols=72  Identities=17%  Similarity=0.217  Sum_probs=46.8

Q ss_pred             CceEEEEeEeCcc-CC-CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          3 GRKITFFCMAEGF-PR-PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         3 g~~~~~~C~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      |+.+.|.|.+.+. |. ..+.|+++|..+............+......+.|.+......+.|.|.|.+.|....
T Consensus       138 g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~  211 (239)
T 1i1c_A          138 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE  211 (239)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence            6789999999885 44 379999999877543211111111122334456777666556789999999987643

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.00  E-value=2.5e-09  Score=54.45  Aligned_cols=66  Identities=18%  Similarity=0.312  Sum_probs=46.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CEEec------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DIELT------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.+.|.|.+.+.+.+.+.|++.  +..+.            ...++....     ......|.|.+++.+|+|.|.|.
T Consensus       152 ~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~  226 (256)
T 3umt_A          152 LGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSR-----SGSDYSLTISSLESEDFVDYYCL  226 (256)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEECSCCGGGCSEEEEE
T ss_pred             CCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEec-----CCCEEEEEECCCChhHCEEEEEE
Confidence            589999999999988889999983  22111            011111110     11134699999999999999999


Q ss_pred             eeCCC
Q psy11826         68 ADNPF   72 (83)
Q Consensus        68 ~~~~~   72 (83)
                      +.+..
T Consensus       227 ~~~~~  231 (256)
T 3umt_A          227 QYASS  231 (256)
T ss_dssp             ECSSS
T ss_pred             EeeCC
Confidence            98854

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.00  E-value=3.7e-09  Score=54.00  Aligned_cols=66  Identities=15%  Similarity=0.265  Sum_probs=46.0

Q ss_pred             CCceEEEEeEeCccCCC-----eEEEEe--CCEEecc------------cceEEEEEEecCCCeEEEEEEEccCCCCCCe
Q psy11826          2 LGRKITFFCMAEGFPRP-----HITWTK--DDIELTF------------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAG   62 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-----~~~w~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   62 (83)
                      .|+.+.|.|.+.+.|.+     .+.|++  ++..+..            ..++....     ......|.|.+++.+|+|
T Consensus       135 ~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG  209 (256)
T 1nqb_A          135 LGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSG-----SGTDFTLKISRVEAEDLG  209 (256)
T ss_dssp             TTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred             cCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEc-----cCCEEEEEECCCChHHCE
Confidence            58899999999988765     899998  4543210            11121110     011357999999999999


Q ss_pred             EEEEEeeCCC
Q psy11826         63 YYECVADNPF   72 (83)
Q Consensus        63 ~y~C~~~~~~   72 (83)
                      .|.|.+.+..
T Consensus       210 ~Y~C~a~~~~  219 (256)
T 1nqb_A          210 VYYCFQGSHV  219 (256)
T ss_dssp             EEEEEECSSS
T ss_pred             EEEEEEccCC
Confidence            9999998743

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.99  E-value=5.1e-09  Score=52.99  Aligned_cols=67  Identities=10%  Similarity=0.267  Sum_probs=44.6

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeC--CEEec----------------ccceEEEEEEecCCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKD--DIELT----------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   61 (83)
                      .|+.+.|.|.+.+.+  .+.+.|++.  +..+.                ...++.+..   ........|.|.+++.+|+
T Consensus       136 ~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~~~D~  212 (242)
T 2znx_A          136 PSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITR---DTSKNQYYLDLNSVTTEDT  212 (242)
T ss_dssp             TTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEE---ETTTTEEEEEECSCCGGGC
T ss_pred             CCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEe---cCCCCEEEEEECCCCcCcC
Confidence            588999999998775  578999984  22110                011121111   0111235799999999999


Q ss_pred             eEEEEEeeCC
Q psy11826         62 GYYECVADNP   71 (83)
Q Consensus        62 g~y~C~~~~~   71 (83)
                      |.|.|.+.+.
T Consensus       213 G~Y~C~a~~~  222 (242)
T 2znx_A          213 ATYYCANXDG  222 (242)
T ss_dssp             EEEEEEETTS
T ss_pred             EEEEEeccCC
Confidence            9999999873

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=98.99  E-value=9e-10  Score=50.44  Aligned_cols=79  Identities=15%  Similarity=0.190  Sum_probs=47.3

Q ss_pred             CCceEEEEeEeCc--cCCCeEEEEeCCEEeccc--ceEEEEEEecCCCeE----EEEEEEccCCCCCCeEEEEEeeC-CC
Q psy11826          2 LGRKITFFCMAEG--FPRPHITWTKDDIELTFH--KYFQVHEWFLGNNTI----KSKMEIDPATQKDAGYYECVADN-PF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~~--~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~-~~   72 (83)
                      .|+.+.|.|...+  .+.+.+.|++.+..+...  ....... .....+.    ..+|.|.+++.+|.|.|.|.+.. ..
T Consensus        17 ~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~-~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~   95 (117)
T 3q0h_A           17 KGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHIS-PSFKDRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPD   95 (117)
T ss_dssp             TTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECC-GGGTTTEEECSTTCEEECSCCGGGCEEEEEEEEEETT
T ss_pred             cCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeC-ccccCcEEeCCceEEEEeeCChhhCEEEEEEEEECCC
Confidence            6899999999766  233468999976533210  0000000 0000000    23699999999999999998754 45


Q ss_pred             cceeeEEEE
Q psy11826         73 AIDRRGFRT   81 (83)
Q Consensus        73 g~~~~~~~~   81 (83)
                      |.......|
T Consensus        96 g~~~~~~~L  104 (117)
T 3q0h_A           96 GTYTGRIFL  104 (117)
T ss_dssp             CCEEEEEEE
T ss_pred             CCeEEEEEE
Confidence            655554443

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.99  E-value=2.6e-09  Score=58.61  Aligned_cols=72  Identities=15%  Similarity=0.180  Sum_probs=47.1

Q ss_pred             CCceEEEEeEeCccCC---CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFPR---PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~---~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+.++   +.+.|  ++..+.............+.....+.|.|..+..+|.|.|.|.+.|..+..
T Consensus       261 ~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~  335 (475)
T 1iga_A          261 LGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKT  335 (475)
T ss_pred             cCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCC
Confidence            5889999999888754   58999  333332211100000001112245679999999999999999999988764

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.99  E-value=5.4e-09  Score=53.84  Aligned_cols=67  Identities=18%  Similarity=0.339  Sum_probs=45.5

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeCC--EEec-----------------ccceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKDD--IELT-----------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.|.|.+.+.+  .+.+.|++++  ....                 ...++.....   .......|.|.+++.+|
T Consensus       148 ~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~D  224 (276)
T 3auv_A          148 PGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISAD---TSKNTAYLQMNSLRAED  224 (276)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEE---GGGTEEEEEECSCCGGG
T ss_pred             CCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEec---CCCcEEEEEECCCChhH
Confidence            588999999998876  5899999853  1110                 0111221110   01123479999999999


Q ss_pred             CeEEEEEeeCC
Q psy11826         61 AGYYECVADNP   71 (83)
Q Consensus        61 ~g~y~C~~~~~   71 (83)
                      +|.|.|.+.|.
T Consensus       225 sG~Y~C~a~n~  235 (276)
T 3auv_A          225 TAVYYCARFVF  235 (276)
T ss_dssp             CEEEEEEEECS
T ss_pred             CEEEEEEEEcC
Confidence            99999999997

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.99  E-value=9.6e-10  Score=53.67  Aligned_cols=60  Identities=15%  Similarity=0.160  Sum_probs=43.4

Q ss_pred             ceEEEEeEe-CccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          4 RKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         4 ~~~~~~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      ..+.|.|.+ .+ |.|.+.|++++..+....              ..+|.+..  ..|.|.|.|.+.|..+.......
T Consensus       116 ~~v~L~C~~~~g-p~p~i~W~~~~~~l~~~~--------------~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~  176 (180)
T 2dru_A          116 SNATLTCEVLEG-TDVELKLYQGKEHLRSLR--------------QKTMSYQW--TNLRAPFKCKAVNRVSQESEMEV  176 (180)
T ss_dssp             GGTEEEEECSSC-TTCEEEEEETTEEEEEES--------------SSEEEEEC--SCCSSCEEEEEEETTEEEEEEEC
T ss_pred             CCEEEEEEeCCC-CCCEEEEEECCeECcCCC--------------CCEEEEEE--hhcCccEEEEEecCcCcccccee
Confidence            346899998 56 999999999998765111              12344422  67899999999999987765543

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.99  E-value=4.5e-09  Score=52.88  Aligned_cols=67  Identities=22%  Similarity=0.358  Sum_probs=46.4

Q ss_pred             CCceEEEEeEeCccC----CCeEEEEeCC--EE---ecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeE
Q psy11826          2 LGRKITFFCMAEGFP----RPHITWTKDD--IE---LTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~----~~~~~w~~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   63 (83)
                      .|+.+.|.|.+.+.|    .+.+.|+++.  ..   +..         ..++....     .....+|.|.+++.+|+|.
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~   89 (240)
T 1moe_A           15 LGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG-----SRTDFTLIIDPVEADDVAT   89 (240)
T ss_dssp             TTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEE
T ss_pred             CCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe-----cCCeEEEEEcCCChhhCEE
Confidence            689999999999887    7889999842  11   100         11111111     0113479999999999999


Q ss_pred             EEEEeeCCCc
Q psy11826         64 YECVADNPFA   73 (83)
Q Consensus        64 y~C~~~~~~g   73 (83)
                      |.|.+.+..+
T Consensus        90 Y~C~~~n~~~   99 (240)
T 1moe_A           90 YYCQQTNEDP   99 (240)
T ss_dssp             EEEEECSSSS
T ss_pred             EEEEEccCCc
Confidence            9999998754

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=98.99  E-value=8e-10  Score=56.78  Aligned_cols=66  Identities=12%  Similarity=0.137  Sum_probs=47.9

Q ss_pred             CCceEEEEeEeCccCCCe-EEEEe-CCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEee-CCCcce
Q psy11826          2 LGRKITFFCMAEGFPRPH-ITWTK-DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD-NPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~-~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~-~~~g~~   75 (83)
                      .|+.+.|.|.+.+.+.+. +.|++ ++..+..........        ...|.|..++.+|.|.|.|.+. +..+..
T Consensus       103 ~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~  171 (289)
T 3ejj_X          103 EGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSP--------WRGFIIRKAKVLDSNTYVCKTMVNGREST  171 (289)
T ss_dssp             TTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEET--------TTEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECC--------CCCEEEeecccccCEEEEEEEEeCCCccc
Confidence            588899999998877765 99986 666655444333211        1258999999999999999998 544443

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.99  E-value=4.4e-09  Score=58.38  Aligned_cols=73  Identities=19%  Similarity=0.228  Sum_probs=50.7

Q ss_pred             CCceEEEEeEeCccCCC--eEEEEeCCEEecccceEE-EEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQ-VHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.+++  .+.|++++..+....... .....+......+.|.|......|.|.|.|.+.|..+.
T Consensus       311 ~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~  386 (512)
T 1zvo_C          311 LRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLP  386 (512)
T ss_pred             cCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCC
Confidence            48899999999887443  799999998755211111 11111122344567999999999999999999987664

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.99  E-value=1.1e-09  Score=59.73  Aligned_cols=73  Identities=15%  Similarity=0.223  Sum_probs=44.2

Q ss_pred             CCceEEEEeEeCccCCC----eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRP----HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.+++    .+.|++++..+...................+.|.|......|.|.|.|.+.|..+.
T Consensus       263 ~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~  339 (457)
T 1hzh_H          263 ISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALP  339 (457)
T ss_dssp             TTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSS
T ss_pred             cCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCC
Confidence            58899999999887653    89999999877543221111111111122333433333333499999999976543

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.98  E-value=6.3e-10  Score=60.65  Aligned_cols=72  Identities=14%  Similarity=0.216  Sum_probs=47.5

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      +..+.|.|.+.+.+++  .+.|+++|..+............+......+.|.+......|.|.|.|.+.|....
T Consensus       370 ~~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  443 (457)
T 1hzh_H          370 KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH  443 (457)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred             CCcEEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCCC
Confidence            3348999999887554  89999999887643221111111122234456777776667899999999997543

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=98.98  E-value=2.5e-09  Score=55.97  Aligned_cols=69  Identities=20%  Similarity=0.163  Sum_probs=49.5

Q ss_pred             CCCceEEEEeEeCcc-----CCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          1 MLGRKITFFCMAEGF-----PRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      ..|+.+.|.|.+.+.     |.+.+.|.+++..+.... ..    ........+.|.|.++...|.|.|.|.+.+..+.
T Consensus        13 ~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~~-~~----~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~   86 (313)
T 2d9q_B           13 HLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGR-QQ----RLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQ   86 (313)
T ss_dssp             CTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTCE-EC----CCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEE
T ss_pred             cCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCccc-eE----EEecCeEEEEEEEeccCCCccceEEeeecCCCce
Confidence            368999999998886     568899999998765321 10    0111111257999999999999999988765443

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.98  E-value=7.5e-09  Score=52.62  Aligned_cols=69  Identities=17%  Similarity=0.353  Sum_probs=45.1

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeC--CEEecc-----------------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKD--DIELTF-----------------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      +|+.+.|.|.+.+.+  .+.+.|++.  +..+..                 ..++....   .......+|.|.+++.+|
T Consensus        15 ~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~~~D   91 (253)
T 3uzq_A           15 PGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITA---DTSSNTAYLHLSSLTSGD   91 (253)
T ss_dssp             TTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEE---ETTTTEEEEEECSCCGGG
T ss_pred             CCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEe---ecCCCeEEEEeCCCCccc
Confidence            689999999988754  678999982  211110                 01111111   011113469999999999


Q ss_pred             CeEEEEEeeCCCc
Q psy11826         61 AGYYECVADNPFA   73 (83)
Q Consensus        61 ~g~y~C~~~~~~g   73 (83)
                      +|.|.|.+.+..+
T Consensus        92 sG~Y~C~~~~~~~  104 (253)
T 3uzq_A           92 TAVYYCSRGWEGF  104 (253)
T ss_dssp             CEEEEEEECSSSC
T ss_pred             CEEEEEEEeeCCc
Confidence            9999999988543

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.98  E-value=4.6e-09  Score=56.39  Aligned_cols=73  Identities=14%  Similarity=0.185  Sum_probs=48.6

Q ss_pred             CCceEEEEeEeCcc-CCC---eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGF-PRP---HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      +|+.+.|.|.+.+. |.|   .+.|++++..+...................+.|.|..++.+|.|.|.|.+.+..+.
T Consensus       182 ~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~  258 (376)
T 2aty_A          182 ITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFP  258 (376)
T ss_pred             eCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCC
Confidence            57889999998887 333   69999988654322111000111122234557999999999999999999987653

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.97  E-value=1.2e-09  Score=55.69  Aligned_cols=75  Identities=20%  Similarity=0.380  Sum_probs=49.2

Q ss_pred             CCceEEEEeEeCc-cCCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEG-FPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.+.|.+.+ .|.+ .+.|++++........... .. .......+.|.|......| |.|.|.+.+..+......
T Consensus       138 ~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~-~~-~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~  214 (253)
T 3liz_H          138 TNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAV-LQ-SDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  214 (253)
T ss_dssp             -CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCE-EE-TTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             CCCcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCCcc-cc-CCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEE
Confidence            4788999999988 6666 7999998763321100000 00 1112234679999999889 999999999887654443

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.97  E-value=5.6e-10  Score=56.90  Aligned_cols=73  Identities=12%  Similarity=0.196  Sum_probs=46.1

Q ss_pred             CCceEEEEeEeC---ccCCCeEEEEeCCEEecccceEE-------EE--------EEecCCCeEEEEEEEccCCCCCCeE
Q psy11826          2 LGRKITFFCMAE---GFPRPHITWTKDDIELTFHKYFQ-------VH--------EWFLGNNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         2 ~g~~~~~~C~~~---~~~~~~~~w~~~~~~~~~~~~~~-------~~--------~~~~~~~~~~~~l~i~~~~~~~~g~   63 (83)
                      +|+.+.|.|.+.   +.+.+.+.|++.+..........       ..        ...........+|.|.+++.+|+|.
T Consensus        19 ~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~   98 (268)
T 3mj6_A           19 VGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGI   98 (268)
T ss_dssp             TTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCGGGCEE
T ss_pred             cCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCHhHCEE
Confidence            689999999987   67778899998543221110000       00        0000000112569999999999999


Q ss_pred             EEEEeeCCCcc
Q psy11826         64 YECVADNPFAI   74 (83)
Q Consensus        64 y~C~~~~~~g~   74 (83)
                      |.|.+.+..+.
T Consensus        99 Y~C~~~~~~~~  109 (268)
T 3mj6_A           99 YTCEIRLKNES  109 (268)
T ss_dssp             EEEEEEETTCC
T ss_pred             EEEEEEecCCc
Confidence            99999876543

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.97  E-value=7.4e-09  Score=52.40  Aligned_cols=67  Identities=16%  Similarity=0.228  Sum_probs=46.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--E---Eecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--I---ELTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~---~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.+.|.|.+.+.|.+.+.|++..  .   .+..         ..++....     .....+|.|.+++.+|+|.|.|.
T Consensus        15 ~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~   89 (242)
T 2znx_A           15 PGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSG-----SGTDFTLSINSVETEDFGMYFCQ   89 (242)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEec-----CCCEEEEEECCCChHHCEEEEEe
Confidence            6899999999999988999999842  1   1110         11111111     01134799999999999999999


Q ss_pred             eeCCCc
Q psy11826         68 ADNPFA   73 (83)
Q Consensus        68 ~~~~~g   73 (83)
                      +.+..+
T Consensus        90 ~~n~~~   95 (242)
T 2znx_A           90 QSNSXP   95 (242)
T ss_dssp             ECSSSS
T ss_pred             EecCCc
Confidence            988643

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.96  E-value=2.2e-08  Score=50.97  Aligned_cols=67  Identities=9%  Similarity=0.239  Sum_probs=44.4

Q ss_pred             CCceEEEEeEeCcc--CCCeEEEEeCC--E--Eec--------------ccceEEEEEEecCCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGF--PRPHITWTKDD--I--ELT--------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~--~~~~~~w~~~~--~--~~~--------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   61 (83)
                      +|+.+.|.|.+.+.  +.+.+.|++..  .  ...              ...++.+...   ......+|.|.+++.+|+
T Consensus        22 ~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~Ds   98 (257)
T 3gkz_A           22 PSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRD---TSKNQVYLQLKSVSSEDT   98 (257)
T ss_dssp             TTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEE---GGGTEEEEEECSCCGGGC
T ss_pred             CCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEe---cCCceEEEEECCCChhhC
Confidence            68999999998874  57889999832  1  111              0011111110   011234799999999999


Q ss_pred             eEEEEEeeCC
Q psy11826         62 GYYECVADNP   71 (83)
Q Consensus        62 g~y~C~~~~~   71 (83)
                      |.|.|.+.+.
T Consensus        99 G~Y~C~~~n~  108 (257)
T 3gkz_A           99 ATYYCSYFDS  108 (257)
T ss_dssp             EEEEEEEECT
T ss_pred             EEEEEEEecC
Confidence            9999999886

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.96  E-value=2.1e-09  Score=54.65  Aligned_cols=66  Identities=20%  Similarity=0.367  Sum_probs=45.4

Q ss_pred             CCceEEEEeEeCccCCC----eEEEEeC--CEEec---c---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeE
Q psy11826          2 LGRKITFFCMAEGFPRP----HITWTKD--DIELT---F---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~----~~~w~~~--~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   63 (83)
                      .|+.+.|.|.+.+.+.+    .+.|++.  +....   .         ..++....     ......|.|.+++.+|+|.
T Consensus       147 ~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~  221 (253)
T 3uzq_A          147 LGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSG-----SRTDFTLTINPVEADDVAT  221 (253)
T ss_dssp             TTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEE
T ss_pred             CCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeC-----CCCEEEEEECCCCHHHCEE
Confidence            58999999999988876    8999984  22111   0         01111110     1113479999999999999


Q ss_pred             EEEEeeCCC
Q psy11826         64 YECVADNPF   72 (83)
Q Consensus        64 y~C~~~~~~   72 (83)
                      |.|.+.|..
T Consensus       222 Y~C~~~n~~  230 (253)
T 3uzq_A          222 YFCQRSNEV  230 (253)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEEccCC
Confidence            999998854

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=98.96  E-value=1.2e-09  Score=50.00  Aligned_cols=71  Identities=21%  Similarity=0.254  Sum_probs=43.9

Q ss_pred             CCceEEEEeEeCcc-CCCeEEEEeCCEE---ec-ccc-----eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGF-PRPHITWTKDDIE---LT-FHK-----YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~~~~w~~~~~~---~~-~~~-----~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      +|+.+.|.|...+. +.+.+.|++.+..   +. ...     +................|.|.+++.+|+|.|.|.+.+.
T Consensus        21 ~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  100 (120)
T 2yz1_A           21 AGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTPEDAGTYYCVKFQK  100 (120)
T ss_dssp             TTCCEEECCEESCCCSCCCEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCGGGCEEEEEEEEEC
T ss_pred             CCCCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCHHHCEEEEEEEEcC
Confidence            68999999998765 5678999997521   10 000     00000000000111246999999999999999998764


Q ss_pred             C
Q psy11826         72 F   72 (83)
Q Consensus        72 ~   72 (83)
                      .
T Consensus       101 ~  101 (120)
T 2yz1_A          101 G  101 (120)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=98.96  E-value=1.3e-08  Score=52.96  Aligned_cols=62  Identities=11%  Similarity=0.200  Sum_probs=46.9

Q ss_pred             CCceEEEEeEeCc-------cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEG-------FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~-------~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.+.|.|.+.+       .|.|.+.|.++|..+.... ..+.   ...   .+.|.|.++.+.+ |.|.|.+.+.
T Consensus        18 ~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~~-~~~~---~~~---~~~L~i~~~~~~~-g~Y~C~a~~~   86 (303)
T 1i1r_A           18 LHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQ-YTII---NRT---ASSVTFTDIASLN-IQLTCNILTF   86 (303)
T ss_dssp             TTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGGG-CEEE---ETT---EEEEEECSCCCSE-EEEEEEEEET
T ss_pred             CCCCEEEEEEECCccccccCCChhheEEEECCEECChhh-eeee---CCc---EEEEEEcCcCCCc-eEEEEecccC
Confidence            5899999999985       4788999999998886542 2221   111   3579999998874 9999999774

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=98.96  E-value=1.5e-09  Score=54.70  Aligned_cols=72  Identities=19%  Similarity=0.333  Sum_probs=49.7

Q ss_pred             CceEEEEeEeCcc-C-CCeEEEEeCCEEecccceEEE--EEE--------ec-CCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          3 GRKITFFCMAEGF-P-RPHITWTKDDIELTFHKYFQV--HEW--------FL-GNNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         3 g~~~~~~C~~~~~-~-~~~~~w~~~~~~~~~~~~~~~--~~~--------~~-~~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      +..+.|.|.+.+. | .+.+.|+++|..+........  ...        .+ ......+.|.|......|.|.|.|.+.
T Consensus       133 ~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~  212 (231)
T 2w59_A          133 LSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAV  212 (231)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEE
T ss_pred             cCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEE
Confidence            4568999999886 4 368999999998865431111  111        11 223345678888888888999999999


Q ss_pred             CCCcc
Q psy11826         70 NPFAI   74 (83)
Q Consensus        70 ~~~g~   74 (83)
                      |....
T Consensus       213 n~~l~  217 (231)
T 2w59_A          213 HEALP  217 (231)
T ss_dssp             CTTST
T ss_pred             cCCCC
Confidence            87654

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=98.95  E-value=1.8e-09  Score=53.12  Aligned_cols=73  Identities=22%  Similarity=0.314  Sum_probs=46.7

Q ss_pred             CCceEEEEeEeCccCCCe---EEEEeCCEEecccce--------EEEEE--------EecCCCeEEEEEEEccCCCCCCe
Q psy11826          2 LGRKITFFCMAEGFPRPH---ITWTKDDIELTFHKY--------FQVHE--------WFLGNNTIKSKMEIDPATQKDAG   62 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~---~~w~~~~~~~~~~~~--------~~~~~--------~~~~~~~~~~~l~i~~~~~~~~g   62 (83)
                      .|+.+.|.|.+.+.|.+.   +.|++++........        .....        ..........+|.|.+++.+|.|
T Consensus        13 ~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G   92 (218)
T 4frw_A           13 LGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQADEG   92 (218)
T ss_dssp             TTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCCGGGCE
T ss_pred             cCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeeccHHHCC
Confidence            689999999998887764   799987643322110        00000        00000111246999999999999


Q ss_pred             EEEEEeeCCCcc
Q psy11826         63 YYECVADNPFAI   74 (83)
Q Consensus        63 ~y~C~~~~~~g~   74 (83)
                      .|.|.+.+..+.
T Consensus        93 ~Y~C~~~~~~~~  104 (218)
T 4frw_A           93 EYECRVSTFPAG  104 (218)
T ss_dssp             EEEEEEEEETTE
T ss_pred             ceeEEEEeccCc
Confidence            999998875543

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.95  E-value=4.8e-09  Score=54.23  Aligned_cols=65  Identities=18%  Similarity=0.329  Sum_probs=45.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEecc------------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELTF------------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.+.|.|.+.+.+ +.+.|++  ++..+..            ..++....     ......|.|.+++.+|+|.|.|.
T Consensus       176 ~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~C~  249 (282)
T 1qok_A          176 PGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSG-----SGTSYSLTISRMEAEDAATYYCQ  249 (282)
T ss_dssp             TTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEec-----CCCEEEEEEccCChhHCEEEEEE
Confidence            588999999999988 8999998  4543210            11121110     01134799999999999999999


Q ss_pred             eeCCC
Q psy11826         68 ADNPF   72 (83)
Q Consensus        68 ~~~~~   72 (83)
                      +.+..
T Consensus       250 a~~~~  254 (282)
T 1qok_A          250 QRSSY  254 (282)
T ss_dssp             ECSSS
T ss_pred             EeeCC
Confidence            98743

>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution, anisotropic AN refinement, immune system; HET: NAG FUC; 1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B 1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B* 1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L 1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...

Probab=98.95  E-value=3.2e-08  Score=44.14  Aligned_cols=68  Identities=16%  Similarity=0.177  Sum_probs=42.8

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      |+.+.+.|.+.|+.++  .+.|.++|..+............+......+.|.+   ..++.+.|.|.+.+..-
T Consensus        18 ~~~~~L~C~~~gfyP~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~ytC~V~H~~l   87 (99)
T 1lk2_B           18 GKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEF---TPTETDTYACRVKHDSM   87 (99)
T ss_dssp             TSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEE---CCCSSCCEEEEEECTTS
T ss_pred             CCCEEEEEEEEEEECCCcEEEEEECCEECCCceeCCeEECCCCcEEEEEEEEE---eCCCCCEEEEEEEcCCC
Confidence            5678999999997544  78999999887532212222211222233444544   45677889999987643

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=98.95  E-value=1.4e-09  Score=54.22  Aligned_cols=72  Identities=21%  Similarity=0.426  Sum_probs=46.8

Q ss_pred             CCceEEEEeEeCcc-CC-CeEEEEeCCEEecccceEE--EEEE---ecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGF-PR-PHITWTKDDIELTFHKYFQ--VHEW---FLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~-~~~~w~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.|. |. +.+.|+++|..+.......  ....   .+......+.|.+......+.+.|.|.+.|...
T Consensus       121 ~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          121 LNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             SSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence            47789999999886 43 4899999998876542111  1111   112223445666665554557899999998654

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.95  E-value=6.7e-09  Score=52.88  Aligned_cols=67  Identities=16%  Similarity=0.266  Sum_probs=45.6

Q ss_pred             CCceEEEEeEeCccCC-CeEEEEeC--CEEec------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEE
Q psy11826          2 LGRKITFFCMAEGFPR-PHITWTKD--DIELT------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC   66 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~-~~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C   66 (83)
                      .|+.+.|.|.+.+.+. +.+.|++.  +....            ...++....  .   .....|.|.+++.+|+|.|.|
T Consensus       163 ~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~---~~~~~L~I~~v~~~DsG~Y~C  237 (256)
T 3juy_B          163 PGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSG--S---GTDFTLTITRVEPEDFALYYC  237 (256)
T ss_dssp             TTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--E---TTEEEEEESSCCGGGCSEEEE
T ss_pred             CCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEc--c---CCEEEEEECCCCHhHCEEEEE
Confidence            5889999999988776 89999872  22111            011111111  0   113469999999999999999


Q ss_pred             EeeCCCc
Q psy11826         67 VADNPFA   73 (83)
Q Consensus        67 ~~~~~~g   73 (83)
                      .+.+...
T Consensus       238 ~~~~~~~  244 (256)
T 3juy_B          238 QVYGASS  244 (256)
T ss_dssp             EECCSSC
T ss_pred             EEeeCCC
Confidence            9988543

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.95  E-value=4.1e-09  Score=53.12  Aligned_cols=71  Identities=15%  Similarity=0.270  Sum_probs=48.2

Q ss_pred             CceEEEEeEeCc-cCCC-eEEEEeCCEEecccceEE--EEEEecCCCeEEEEEEEccCCCCC-CeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEG-FPRP-HITWTKDDIELTFHKYFQ--VHEWFLGNNTIKSKMEIDPATQKD-AGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~-~~~~-~~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~g   73 (83)
                      |+.+.|.|.+.+ .|.+ .+.|+++|..+.......  ............+.|.|......| .|.|.|.+.+...
T Consensus       137 g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~  212 (240)
T 3q5y_A          137 KQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGL  212 (240)
T ss_dssp             HSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             CCceEEEEEEeeEECCCeEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence            678999999988 5556 689999998876532211  011111222334568999888888 6799999987654

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.94  E-value=6.2e-10  Score=58.83  Aligned_cols=71  Identities=15%  Similarity=0.268  Sum_probs=47.0

Q ss_pred             CceEEEEeEeCcc-C-CCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGF-P-RPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~-~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      |..+.|.|.+.|. | .+.+.|+++|..+............+......+.|.+......|.|.|.|.+.|...
T Consensus       257 ~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l  329 (344)
T 1za6_B          257 KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  329 (344)
T ss_dssp             SSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTS
T ss_pred             CCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCC
Confidence            5569999999885 3 358999999977654321111111112223445677777777789999999998654

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.94  E-value=5.9e-09  Score=53.90  Aligned_cols=69  Identities=19%  Similarity=0.406  Sum_probs=46.3

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeCC--EEec-----------------ccceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKDD--IELT-----------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.|.|.+.+.+  .+.+.|++.+  ..+.                 ...++.....   ......+|.|.+++.+|
T Consensus        40 ~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~~v~~~D  116 (282)
T 1qok_A           40 SGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTD---TSSNTAYLQLSSLTSED  116 (282)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEE---TTTTEEEEEECSCCGGG
T ss_pred             CCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEe---cCCCeEEEEECcCChhh
Confidence            588999999988775  5789999843  1110                 0011111110   01123579999999999


Q ss_pred             CeEEEEEeeCCCc
Q psy11826         61 AGYYECVADNPFA   73 (83)
Q Consensus        61 ~g~y~C~~~~~~g   73 (83)
                      +|.|.|.+.+..|
T Consensus       117 sG~Y~C~~~n~~g  129 (282)
T 1qok_A          117 TAVYYCNEGTPTG  129 (282)
T ss_dssp             CEEEEEEEECSSS
T ss_pred             CEEEEEEeccCCC
Confidence            9999999998765

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=98.94  E-value=1.8e-09  Score=55.01  Aligned_cols=73  Identities=15%  Similarity=0.216  Sum_probs=46.7

Q ss_pred             CCceEEEEeEeCccC----CCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFP----RPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.+    ...+.|+++|..+............+......+.|.|......|.+.|.|.+.+..+.
T Consensus        38 ~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~  114 (240)
T 4acp_A           38 ISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALP  114 (240)
T ss_dssp             SSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC---
T ss_pred             cCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCC
Confidence            488899999998864    2379999999887543211101111122334467888777777789999999987763

>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha, immunoglobulin superfamily, transmembrane, phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo sapiens} PDB: 2jjt_C* 2vsc_A*

Probab=98.94  E-value=2.3e-09  Score=49.79  Aligned_cols=81  Identities=7%  Similarity=0.084  Sum_probs=52.1

Q ss_pred             CCceEEEEeEeCccCC-----CeEEEEeCCEEecc--cc-eEEEEE--------EecCCCeEEEEEEEccCCC-CCCeEE
Q psy11826          2 LGRKITFFCMAEGFPR-----PHITWTKDDIELTF--HK-YFQVHE--------WFLGNNTIKSKMEIDPATQ-KDAGYY   64 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~-----~~~~w~~~~~~~~~--~~-~~~~~~--------~~~~~~~~~~~l~i~~~~~-~~~g~y   64 (83)
                      .++++.+.|.....++     ..|.|.+++..+..  .. ......        ....-..+.++|.|..++. +|.|.|
T Consensus        15 ~n~~vtLpC~l~~~~~~~~~~m~V~W~~~~~~i~~~~G~~~~~~q~~~~~~a~l~~~~l~~GnaSL~i~~v~~~sD~G~Y   94 (127)
T 2jjs_C           15 GNDTVVIPCFVTNMEAQNTTEVYVKWKFKGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGDASLKMDKSDAVSHTGNY   94 (127)
T ss_dssp             TCSEEEECCBBSSCCCSSGGGEEEEEEETTEEEEEEEGGGTEEECCGGGTTCBCCGGGGGGTBCCEEEEHHHHHTSCEEE
T ss_pred             cCCCEEEEEEeCCcCCCCcceEEEEEEECCeEeEeeCCceeeccccccccceEechhhhccCcEEEEEcccccccCCcEE
Confidence            4788999999875443     36899998876543  11 110000        0000112236899999998 699999


Q ss_pred             EEEeeCCCcceeeEEEEe
Q psy11826         65 ECVADNPFAIDRRGFRTD   82 (83)
Q Consensus        65 ~C~~~~~~g~~~~~~~~~   82 (83)
                      +|.+........+.+.|+
T Consensus        95 tC~v~~~~~~~~~~i~Lk  112 (127)
T 2jjs_C           95 TCEVTELTREGETIIELK  112 (127)
T ss_dssp             EEEEEETTEEEEEEEEEE
T ss_pred             EEEEEeCCceEEEEEEEE
Confidence            999988776666666554

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=98.94  E-value=7.4e-09  Score=46.82  Aligned_cols=65  Identities=23%  Similarity=0.399  Sum_probs=43.9

Q ss_pred             CCceEEEEeEeCccC----CCeEEEEeCC--E--E-ecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeE
Q psy11826          2 LGRKITFFCMAEGFP----RPHITWTKDD--I--E-LTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~----~~~~~w~~~~--~--~-~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   63 (83)
                      +|+.+.|.|...+.+    .+.+.|++..  .  . +..         ..++....     ......|.|.+++.+|+|.
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~-----~~~~~~L~I~~v~~~DsG~   89 (111)
T 1j05_L           15 LGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG-----SRTDFTLIIDPVEADDVAT   89 (111)
T ss_dssp             TTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGGCEE
T ss_pred             CCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEc-----cCCEEEEEECCCCcccCEE
Confidence            689999999988766    4679999742  1  1 110         11121110     1113479999999999999


Q ss_pred             EEEEeeCC
Q psy11826         64 YECVADNP   71 (83)
Q Consensus        64 y~C~~~~~   71 (83)
                      |.|.+.+.
T Consensus        90 Y~C~~~~~   97 (111)
T 1j05_L           90 YYCQQTNE   97 (111)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEecC
Confidence            99999875

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=98.94  E-value=6.6e-09  Score=48.27  Aligned_cols=71  Identities=17%  Similarity=0.215  Sum_probs=43.5

Q ss_pred             CCceEEEEeEeC---ccCCCeEEEEeCCEEeccc---c---------------eEEEEEEec--CCC----eEEEEEEEc
Q psy11826          2 LGRKITFFCMAE---GFPRPHITWTKDDIELTFH---K---------------YFQVHEWFL--GNN----TIKSKMEID   54 (83)
Q Consensus         2 ~g~~~~~~C~~~---~~~~~~~~w~~~~~~~~~~---~---------------~~~~~~~~~--~~~----~~~~~l~i~   54 (83)
                      .|+.+.|.|...   ..+.+.+.|++.+......   .               .........  ...    ....+|.|.
T Consensus        18 ~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~sL~I~   97 (135)
T 1xt5_A           18 AGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLT   97 (135)
T ss_dssp             TTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEESCTTSCCEEEC
T ss_pred             CCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEEecCCCCeEEEC
Confidence            588999999964   3577889999854321000   0               000000000  000    012469999


Q ss_pred             cCCCCCCeEEEEEeeCCC
Q psy11826         55 PATQKDAGYYECVADNPF   72 (83)
Q Consensus        55 ~~~~~~~g~y~C~~~~~~   72 (83)
                      +++.+|+|.|.|.+.+..
T Consensus        98 ~v~~~D~G~Y~C~v~~~~  115 (135)
T 1xt5_A           98 HVHPQDGGRYWCQVAQWS  115 (135)
T ss_dssp             SCCGGGCEEEEEEEECSS
T ss_pred             CCChhhCcEEEEEEEcCC
Confidence            999999999999998853

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.94  E-value=4.6e-09  Score=56.39  Aligned_cols=72  Identities=14%  Similarity=0.137  Sum_probs=49.4

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+.+  .+.|.|++++..+............+......+.|.+......|.+.|.|.+.+...
T Consensus       288 ~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          288 AKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             cCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence            367899999999863  357899999987754322111111122334556788888777789999999998654

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=98.93  E-value=9.5e-10  Score=56.67  Aligned_cols=64  Identities=14%  Similarity=0.138  Sum_probs=48.0

Q ss_pred             CCceEEEEeEeCccCC-CeEEEE-eCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCe-EEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPR-PHITWT-KDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG-YYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~-~~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+ |. +.+.|+ +++..+..........        ...|.|..++.+|.| .|.|.+.|..+.
T Consensus       105 ~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~--------~~~L~i~~v~~~d~G~~Y~C~a~n~~~~  171 (290)
T 2o26_X          105 EDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNP--------KAGITIKNVKRAYHRLCVRCAAQRDGTW  171 (290)
T ss_dssp             TTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEET--------TTEEEEESCCGGGTTCEEEEEEEETTEE
T ss_pred             cCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCC--------CCCEEEecccHHHCCCEEEEEEEECCce
Confidence            4888999999885 77 899995 6776665543322211        126899999999999 999999997555

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.93  E-value=3.9e-10  Score=62.96  Aligned_cols=72  Identities=15%  Similarity=0.319  Sum_probs=51.2

Q ss_pred             CCceEEEEeEe-CccCCCeEEEEeCCEEeccc------------ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          2 LGRKITFFCMA-EGFPRPHITWTKDDIELTFH------------KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         2 ~g~~~~~~C~~-~~~~~~~~~w~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      .|+.++|.|.+ .+.|.+.+.|++++..+...            .+...     ..   ..+|.|.+++.+|.|.|.|.+
T Consensus       380 ~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~-----~~---~~~L~i~~v~~~D~G~Y~C~~  451 (581)
T 3o3u_N          380 IGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARV-----LP---NGSLFLPAVGIQDEGIFRCQA  451 (581)
T ss_dssp             TTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEE-----CT---TSCEEESSCCGGGCEEEEEEE
T ss_pred             cCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEE-----cC---CceEEEeccccccCeEEEEEE
Confidence            58999999998 78889999999876422111            01110     00   126999999999999999999


Q ss_pred             eCCCcce-eeEEEE
Q psy11826         69 DNPFAID-RRGFRT   81 (83)
Q Consensus        69 ~~~~g~~-~~~~~~   81 (83)
                      .+..+.. .....|
T Consensus       452 ~n~~~~~~~~~~~l  465 (581)
T 3o3u_N          452 MNRNGKETKSNYRV  465 (581)
T ss_dssp             ECTTSCEEEEEEEE
T ss_pred             EcCCCceeEEEEEE
Confidence            9988776 444443

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.93  E-value=3.2e-09  Score=53.42  Aligned_cols=66  Identities=18%  Similarity=0.424  Sum_probs=43.9

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeC--CEEecc-----------------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKD--DIELTF-----------------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.|.|.+.+.|  .+.+.|+++  +..+..                 ..++....   ........|.|.+++.+|
T Consensus       133 ~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~~~D  209 (240)
T 1moe_A          133 PGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITA---DTSSNTAYLQLTSLTSED  209 (240)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEE---ETTTTEEEEEECSCCGGG
T ss_pred             CCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEE---cccCCEEEEEECcCCHHH
Confidence            588999999998876  468999985  221110                 01111111   011123579999999999


Q ss_pred             CeEEEEEeeC
Q psy11826         61 AGYYECVADN   70 (83)
Q Consensus        61 ~g~y~C~~~~   70 (83)
                      +|.|.|.+.+
T Consensus       210 ~G~Y~C~a~~  219 (240)
T 1moe_A          210 TAVYYCAPFG  219 (240)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEEEEEEe
Confidence            9999999984

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.93  E-value=2.2e-09  Score=58.30  Aligned_cols=71  Identities=18%  Similarity=0.259  Sum_probs=46.9

Q ss_pred             CceEEEEeEeCcc-CCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      +..+.|.|.+.+. |.+ .+.|+++|..+............+......+.|.+......|.|.|.|.+.|...
T Consensus       361 ~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l  433 (444)
T 1igt_B          361 KKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL  433 (444)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             CCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCc
Confidence            3459999999884 555 8999999987743211111111112223445678877777789999999998753

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.93  E-value=5.8e-09  Score=52.78  Aligned_cols=67  Identities=21%  Similarity=0.370  Sum_probs=44.6

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeCC--EEec------c-----------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKDD--IELT------F-----------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~~--~~~~------~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.|.|.+.+.+  .+.+.|++++  ....      .           ..++.....   .......|.|.+++.+|
T Consensus       141 ~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~D  217 (247)
T 1svz_A          141 PGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLD---TSTSTAFLQINNLKNED  217 (247)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEE---GGGTEEEEEECSCCGGG
T ss_pred             CCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEe---cCCCEEEEEECCCChhH
Confidence            588999999988774  5689999853  1110      0           111111110   01123579999999999


Q ss_pred             CeEEEEEeeCC
Q psy11826         61 AGYYECVADNP   71 (83)
Q Consensus        61 ~g~y~C~~~~~   71 (83)
                      +|.|.|.+.|.
T Consensus       218 sG~Y~C~a~n~  228 (247)
T 1svz_A          218 TATYFCVRDRH  228 (247)
T ss_dssp             CEEEEEEEEEG
T ss_pred             CEEEEEEEecc
Confidence            99999999884

>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide), major histocompatibility complex class I DD, transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP: b.1.1.2

Probab=98.93  E-value=3.7e-08  Score=45.35  Aligned_cols=67  Identities=16%  Similarity=0.183  Sum_probs=42.9

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      |+.+++.|.+.|+.++  .+.|.++|..+.........+..+......+.|.+   ..++.+.|.|.+.+..
T Consensus        38 ~~~~tL~C~a~gFyP~~I~v~W~knG~~i~~~~~~~~~~n~dgty~~~s~L~v---~~~~~~~ytC~V~H~s  106 (119)
T 1bii_B           38 GKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEF---TPTETDTYACRVKHDS  106 (119)
T ss_dssp             SSCEEEEEEEEEEBSSCCEEEEEETTEECSCCEEEEEEECTTSCEEEEEEEEE---CCCSSCCEEEEEECTT
T ss_pred             CCCEEEEEEEEeecCCCeEEEEEECCEECCCEEecceEECCCCeEEEEEEEEE---ecCCCCEEEEEEEcCC
Confidence            5578999999997544  78999999887432222222222223334444544   4567788999998764

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.93  E-value=3.2e-09  Score=57.59  Aligned_cols=71  Identities=18%  Similarity=0.413  Sum_probs=48.5

Q ss_pred             CCceEEEEeEeCcc-CCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+. |.| .+.|++++..+........ . ........+.|.|..+..+| |.|.|.+.|..+..
T Consensus       133 ~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~-~-~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~  205 (434)
T 1igy_B          133 TNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAV-L-QSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASST  205 (434)
T ss_dssp             CTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCE-E-CSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTC
T ss_pred             CCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCce-e-cCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCc
Confidence            58899999999886 766 8999998864321100000 0 00112234578999999888 99999999988764

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=98.93  E-value=6.6e-09  Score=54.74  Aligned_cols=59  Identities=15%  Similarity=0.309  Sum_probs=42.8

Q ss_pred             CCceEEEEeEeCccC-CCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          2 LGRKITFFCMAEGFP-RPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      .|+++.|.|.+.+.+ .+.+.|.+++..+.... .....       ..+.|.|..+...|+|.|.|..
T Consensus        20 ~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~-~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~   79 (325)
T 1n26_A           20 PGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP-SRWAG-------MGRRLLLRSVQLHDSGNYSCYR   79 (325)
T ss_dssp             TTCCEEEECTTSCTTCCSEEEEEEECSSSSCCC-EEEEE-------ESSEEEECSCCGGGCEEEEEES
T ss_pred             CCCcEEEEeCCCCCCCCceEEEEECCccCCccc-ccccc-------ccceEEecccchhhCeEeEEEe
Confidence            689999999987654 78999998776542211 11111       1246999999999999999993

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.92  E-value=4e-09  Score=52.60  Aligned_cols=69  Identities=16%  Similarity=0.325  Sum_probs=45.7

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeCC--EE---ec----c------------cceEEEEEEecCCCeEEEEEEEccCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKDD--IE---LT----F------------HKYFQVHEWFLGNNTIKSKMEIDPATQ   58 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~~--~~---~~----~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~   58 (83)
                      .|+.+.|.|.+.+.+  .+.+.|++..  ..   +.    .            ..++.....  . ......|.|.+++.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~--~-~~~~~~L~I~~v~~   90 (222)
T 1q9r_B           14 SGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRD--N-SQSILYLQMNTLRA   90 (222)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEE--T-TTTEEEEEECSCCG
T ss_pred             CCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEE--C-CCCeEEEEECcCCc
Confidence            689999999988765  6789999742  11   10    0            011221110  0 11245799999999


Q ss_pred             CCCeEEEEEeeCCCc
Q psy11826         59 KDAGYYECVADNPFA   73 (83)
Q Consensus        59 ~~~g~y~C~~~~~~g   73 (83)
                      +|+|.|.|.+.+..+
T Consensus        91 ~D~G~Y~C~~~~~~~  105 (222)
T 1q9r_B           91 EDSATYYCARDHDGY  105 (222)
T ss_dssp             GGCEEEEEEECCCSS
T ss_pred             ccCeEEEEEEeccCC
Confidence            999999999988653

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.92  E-value=2.3e-09  Score=54.30  Aligned_cols=71  Identities=15%  Similarity=0.207  Sum_probs=46.4

Q ss_pred             CCceEEEEeEeCcc-CC-CeEEEEeCCE-EecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGF-PR-PHITWTKDDI-ELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~-~~~~w~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.+.|.+.+. |. +.+.|++++. .+......... .........+.|.|..... + |.|.|.+.|..+..
T Consensus       146 ~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~~~~~~~~-~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~  219 (242)
T 1hxm_B          146 LQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTM-KTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKN  219 (242)
T ss_dssp             SSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCE-ECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGG
T ss_pred             cCCCceEEEEEeeEECCCeEEEEEcCCCEeecCcccccee-cCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCC
Confidence            37889999999886 54 6899999886 44322110011 1122233446788877664 4 99999999987754

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.92  E-value=1.2e-08  Score=51.10  Aligned_cols=69  Identities=14%  Similarity=0.239  Sum_probs=46.1

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeCC--EEec-----------------ccceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKDD--IELT-----------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.|.|.+.+.+  .+.+.|++..  ..+.                 ...++.....   .......|.|.+++.+|
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~~v~~~D   90 (225)
T 1op3_H           14 AGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRD---DLEDFVYLQMHKMRVED   90 (225)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEE---TTTTEEEEEECSCCGGG
T ss_pred             CCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEec---CCCCEEEEEECCCChhh
Confidence            589999999988766  6789998742  2110                 0011221110   01123579999999999


Q ss_pred             CeEEEEEeeCCCc
Q psy11826         61 AGYYECVADNPFA   73 (83)
Q Consensus        61 ~g~y~C~~~~~~g   73 (83)
                      +|.|.|.+.+..+
T Consensus        91 ~G~Y~C~~~~~~~  103 (225)
T 1op3_H           91 TAIYYCARKGSDR  103 (225)
T ss_dssp             CEEEEEEEECCSS
T ss_pred             CEEEEEEEecCCC
Confidence            9999999998753

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.92  E-value=3.5e-09  Score=53.25  Aligned_cols=67  Identities=15%  Similarity=0.277  Sum_probs=43.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CEEec---------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DIELT---------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY   64 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y   64 (83)
                      .|+.+.|.|. .+.|.+.+.|+++  +....               ...++.+..    ......+|.|.+++.+|+|.|
T Consensus        14 ~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~v~~~DsG~Y   88 (238)
T 2p1y_A           14 TGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR----PSQENFSLILELATPSQTSVY   88 (238)
T ss_dssp             TTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC----CSSSBCEEEESSCCGGGCEEE
T ss_pred             CCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc----cCCceEEEEEecCCcccCeeE
Confidence            5899999999 6788899999984  21110               001111110    011134799999999999999


Q ss_pred             EEEeeCCCc
Q psy11826         65 ECVADNPFA   73 (83)
Q Consensus        65 ~C~~~~~~g   73 (83)
                      .|.+.+..+
T Consensus        89 ~C~~~~~~g   97 (238)
T 2p1y_A           89 FCASGDLGQ   97 (238)
T ss_dssp             EEEEEC---
T ss_pred             EEEEEeCCC
Confidence            999998754

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=98.92  E-value=7.9e-09  Score=53.96  Aligned_cols=65  Identities=17%  Similarity=0.234  Sum_probs=41.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+. .+.+.+.|++++..+.......    ..........|.|..++  |+|.|.|.+.|..+
T Consensus       232 ~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~~~~~----~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~  296 (316)
T 3vh8_G          232 AGESVTLSCSSR-SSYDMYHLSREGGAHERRLPAV----RKVNRTFQADFPLGPAT--HGGTYRCFGSFRHS  296 (316)
T ss_dssp             TTSCCEEEEEES-SCCSEEEEEETTSSCCEEEECE----ECTTSCEEEEEECC-------CEEEEEEEBTTB
T ss_pred             CCCcEEEEEECC-CCCcEEEEEECCCcCCCceece----eccCCceeEEEEcCCcC--CCEEEEEEeecCCC
Confidence            588999999986 4778999999987654321100    01122234679999988  99999999998655

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.91  E-value=1.3e-09  Score=55.83  Aligned_cols=71  Identities=14%  Similarity=0.245  Sum_probs=47.5

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEE------EecCCCeEEEEEEEccCCCCC-CeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHE------WFLGNNTIKSKMEIDPATQKD-AGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~g   73 (83)
                      |+.+.+.|.+.+.+++  .+.|+++|..+..........      .........+.|.+......| .|.|.|.+.+...
T Consensus       161 g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l  240 (268)
T 3pl6_D          161 TQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL  240 (268)
T ss_dssp             HSEEEEEEEEEEEBSSCEEEEEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             CCceEEEEEECcccCCCeEEEEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCC
Confidence            6789999999886654  799999998775432110000      001122334568888887777 9999999987654

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.91  E-value=8.2e-09  Score=56.65  Aligned_cols=72  Identities=19%  Similarity=0.369  Sum_probs=49.2

Q ss_pred             CCceEEEEeEeCccCC--CeEEEEeCCEEecccceEEE--EEE---ecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQV--HEW---FLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+.++  +.+.|+++|..+........  ...   .+......+.|.+......|.|.|.|.+.|...
T Consensus       364 ~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l  442 (475)
T 1iga_A          364 LNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  442 (475)
T ss_pred             cCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCC
Confidence            4777999999988643  48999999988765431111  111   011223456788888888889999999998754

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.91  E-value=2.7e-08  Score=50.26  Aligned_cols=64  Identities=19%  Similarity=0.334  Sum_probs=43.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEe------------ccc----ceEEEEEEecCCCeEEEEEEEccCCCCCCeE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIEL------------TFH----KYFQVHEWFLGNNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~------------~~~----~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   63 (83)
                      +|+.+.|.| ..+.+.+.+.|++  .+...            ...    .++....    ......+|.|.+++.+|+|.
T Consensus        16 ~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~sL~I~~v~~~D~G~   90 (245)
T 4ei6_B           16 MGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVER----PDGSYFTLKIQPTALEDSAV   90 (245)
T ss_dssp             TTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEEC----CTTSCEEEEECSCCGGGCEE
T ss_pred             CCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEe----ccCceEEEEECCCCHhHCEE
Confidence            689999999 6678888999997  11111            000    1111111    11224579999999999999


Q ss_pred             EEEEeeC
Q psy11826         64 YECVADN   70 (83)
Q Consensus        64 y~C~~~~   70 (83)
                      |.|.+.+
T Consensus        91 Y~C~~~~   97 (245)
T 4ei6_B           91 YFCASSF   97 (245)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcc
Confidence            9999985

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.91  E-value=1.8e-09  Score=53.46  Aligned_cols=64  Identities=17%  Similarity=0.445  Sum_probs=44.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CEEec------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DIELT------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.+.|.|.+.+.|.+.+.|+++  +..+.            ...++....     ......|.|.+++.+|+|.|.|.
T Consensus        13 ~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~   87 (212)
T 1nfd_E           13 VGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST-----SGTTATLTISGAQPEDEAAYYCL   87 (212)
T ss_dssp             TTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEETTCCGGGCSEEEEE
T ss_pred             CCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEe-----eCCEEEEEECcCCcccCEEEEEE
Confidence            588999999988888888999873  32221            011222111     01134799999999999999999


Q ss_pred             eeC
Q psy11826         68 ADN   70 (83)
Q Consensus        68 ~~~   70 (83)
                      +.|
T Consensus        88 ~~n   90 (212)
T 1nfd_E           88 SSY   90 (212)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            985

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.91  E-value=6.3e-09  Score=52.13  Aligned_cols=67  Identities=13%  Similarity=0.225  Sum_probs=45.2

Q ss_pred             CCceEEEEeEeCccCC-C-eEEEEeCC--EEe---c---------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEE
Q psy11826          2 LGRKITFFCMAEGFPR-P-HITWTKDD--IEL---T---------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE   65 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~-~-~~~w~~~~--~~~---~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   65 (83)
                      .|+.+.|.|.+.+.+. + .+.|++++  ..+   .         ...++....     ......|.|.+++.+|+|.|.
T Consensus        33 ~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~  107 (234)
T 2j6e_L           33 PGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSK-----SGTSASLAISGLRSEDEADYY  107 (234)
T ss_dssp             TTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEE-----ETTEEEEEEESCCSTTCSEEE
T ss_pred             CCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEe-----cCCeEEEEECCCCHHHCEEEE
Confidence            6899999999887543 4 69999753  211   0         011222111     011347999999999999999


Q ss_pred             EEeeCCCc
Q psy11826         66 CVADNPFA   73 (83)
Q Consensus        66 C~~~~~~g   73 (83)
                      |.+.+..+
T Consensus       108 C~~~~~~~  115 (234)
T 2j6e_L          108 CATWDDSL  115 (234)
T ss_dssp             EEEEETTT
T ss_pred             EEEEcCCc
Confidence            99998766

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.91  E-value=6.5e-10  Score=55.74  Aligned_cols=67  Identities=15%  Similarity=0.302  Sum_probs=37.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--EEe---cc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--IEL---TF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.+.|.|.+.+.+.+.+.|++++  ...   ..         ..++..     ........|.|.+++.+|+|.|.|.
T Consensus        37 ~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C~  111 (233)
T 3bqu_C           37 IGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSS-----SGYGTDFVFTIENMLSEDVADYYCL  111 (233)
T ss_dssp             ----CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCC-----CEEEEEEEEC-----CCCCSEEEEE
T ss_pred             cCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEe-----eccCCEEEEEECCCCHHHCEEEEEE
Confidence            5888999999888888889998743  111   00         001000     0012234799999999999999999


Q ss_pred             eeCCCc
Q psy11826         68 ADNPFA   73 (83)
Q Consensus        68 ~~~~~g   73 (83)
                      +.+..+
T Consensus       112 ~~~~~~  117 (233)
T 3bqu_C          112 QSDNLP  117 (233)
T ss_dssp             ECSSSS
T ss_pred             EecCCc
Confidence            987654

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.91  E-value=1.8e-08  Score=51.32  Aligned_cols=67  Identities=18%  Similarity=0.392  Sum_probs=44.3

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeC--CEEecc-----------------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKD--DIELTF-----------------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      +|+.+.|.|.+.+.+  .+.+.|++.  +..+..                 ..++.....   .......|.|.+++.+|
T Consensus        16 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~~D   92 (256)
T 3umt_A           16 PGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVD---KSSSTAYLELRSLTSED   92 (256)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEE---GGGTEEEEEECSCCGGG
T ss_pred             CCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEe---cCCCEEEEEECCCCccc
Confidence            689999999988765  678999872  211100                 011111110   11123469999999999


Q ss_pred             CeEEEEEeeCC
Q psy11826         61 AGYYECVADNP   71 (83)
Q Consensus        61 ~g~y~C~~~~~   71 (83)
                      +|.|.|.+.+.
T Consensus        93 sG~Y~C~~~~~  103 (256)
T 3umt_A           93 SAVYYCARDDR  103 (256)
T ss_dssp             CEEEEEEECCS
T ss_pred             CEEEEEEEccC
Confidence            99999999886

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.91  E-value=7.8e-09  Score=51.49  Aligned_cols=69  Identities=16%  Similarity=0.405  Sum_probs=45.9

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEeCC--EE---ecc----------------cceEEEEEEecCCCeEEEEEEEccCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTKDD--IE---LTF----------------HKYFQVHEWFLGNNTIKSKMEIDPAT   57 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~~~--~~---~~~----------------~~~~~~~~~~~~~~~~~~~l~i~~~~   57 (83)
                      ..|+.+.|.|.+.+.+  .+.+.|++.+  ..   +..                ..++.....   .......|.|.+++
T Consensus        13 ~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~v~   89 (220)
T 1pz5_B           13 QPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRD---DSKSSVYLQMNNLR   89 (220)
T ss_dssp             CTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEE---GGGTEEEEEECSCC
T ss_pred             cCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEe---CCCCeEEEEEccCC
Confidence            3689999999988765  6889999742  11   100                011221110   01123479999999


Q ss_pred             CCCCeEEEEEeeCCC
Q psy11826         58 QKDAGYYECVADNPF   72 (83)
Q Consensus        58 ~~~~g~y~C~~~~~~   72 (83)
                      .+|+|.|.|.+.+..
T Consensus        90 ~~D~G~Y~C~~~~~~  104 (220)
T 1pz5_B           90 AEDTGIYYCTRGGAV  104 (220)
T ss_dssp             GGGCEEEEEEEECTT
T ss_pred             HHHCEEEEEEEecCC
Confidence            999999999999864

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.91  E-value=1.5e-08  Score=51.59  Aligned_cols=64  Identities=14%  Similarity=0.128  Sum_probs=45.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .|+.++|.|.+.+ +.+.+.|++++..+.....      ..........|.|.+++.+|+|.|.|.+.+..
T Consensus        20 ~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~------~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   83 (242)
T 1p6f_A           20 KEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP------KPPERINKVKFYIPDMNSRMAGQYSCIYRVGE   83 (242)
T ss_dssp             TTCCEEEEEECCT-TCCEEEEEETTEEEEEECC------SSCTTCCEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CCCcEEEEEeeCC-CCcEEEEEECCCccccccc------cccCCcceeEEEecCCCcccCeEEEEEEecCC
Confidence            5899999999764 4567899999876542100      00011124579999999999999999997653

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.91  E-value=5.5e-09  Score=53.20  Aligned_cols=61  Identities=18%  Similarity=0.443  Sum_probs=45.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .|+.++|.|.+.+. .+.+.|++++..+....  .    .   ......|.|.+++.+|+|.|.|.+.+..
T Consensus       115 ~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~--~----~---~~~~~~l~I~~v~~~d~G~Y~C~a~n~~  175 (242)
T 1p6f_A          115 SGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQR--G----Y---GKVQAEFPLGPVTTAHRGTYRCFGSYNN  175 (242)
T ss_dssp             TTCEEEEEEECTTS-CSEEEEEECSSSCEEEE--E----E---CSSEEEEEEEECCGGGCEEEEEEEEEET
T ss_pred             CCCcEEEEEecCCC-CCEEEEEECCCccCccc--c----C---CCceEEEEeCCCccccCEEEEEEEECCC
Confidence            58999999997654 45899999986554310  0    0   1114579999999999999999998753

>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=98.91  E-value=1.4e-09  Score=46.66  Aligned_cols=61  Identities=13%  Similarity=0.400  Sum_probs=38.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|      .+.+.|++++..+.....              .+|.|.+....+.|.|.|.+.+..+...+.+.|
T Consensus         8 ~g~~V~LtC------~~~i~W~k~~~~i~~~~~--------------~tL~L~~~~~d~sG~Y~C~~~~~~~~~~s~LqV   67 (79)
T 1xiw_B            8 LEDRVFVNC------NTSITWVEGTVGTLLSDI--------------TRLDLGKRILDPRGIYRCNGTDIYKDKESTVQV   67 (79)
T ss_dssp             ETTEEEEEC------SSCEEEEEECCCEEEGGG--------------TEEEEEEGGGCCEEEEEEC--------CEEEEE
T ss_pred             CCCEEEEEc------CCCEEEEECCcccccccC--------------CeEEeccCcCCCCeEEEecCCCCCCcccEEEEE
Confidence            478899999      566999998876543211              257777777778999999988887765555554


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        68 ~   68 (79)
T 1xiw_B           68 H   68 (79)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.90  E-value=7.8e-10  Score=59.96  Aligned_cols=73  Identities=16%  Similarity=0.170  Sum_probs=47.9

Q ss_pred             CCceEEEEeEeCccCC--CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.++  +.+.|+++|..+............++.....+.|.+......|.|.|.|.+.|....
T Consensus       350 ~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  424 (434)
T 1igy_B          350 AKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  424 (434)
T ss_dssp             SSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred             cCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence            4667999999988543  379999999876432111000011112234467888887778899999999987543

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.90  E-value=1e-08  Score=50.90  Aligned_cols=68  Identities=15%  Similarity=0.213  Sum_probs=44.8

Q ss_pred             CCCceEEEEeEeC-ccC-CCeEEEEeCC--EEec------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEE
Q psy11826          1 MLGRKITFFCMAE-GFP-RPHITWTKDD--IELT------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY   64 (83)
Q Consensus         1 ~~g~~~~~~C~~~-~~~-~~~~~w~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y   64 (83)
                      ..|+.+.|.|.+. +.+ .+.+.|++++  ..+.            ...++....     ......|.|.+++.+|+|.|
T Consensus        13 ~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y   87 (216)
T 2xzc_L           13 APGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK-----SGTSATLGITGLQTGDEADY   87 (216)
T ss_dssp             CTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE-----ETTEEEEEECSCCGGGCEEE
T ss_pred             cCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEec-----cCCEEEEEECCCCcccCEEE
Confidence            3689999999954 332 5789999843  1110            011222111     11134799999999999999


Q ss_pred             EEEeeCCCc
Q psy11826         65 ECVADNPFA   73 (83)
Q Consensus        65 ~C~~~~~~g   73 (83)
                      .|.+.+..+
T Consensus        88 ~C~~~~~~~   96 (216)
T 2xzc_L           88 YCGTWDSSL   96 (216)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEEeCCC
Confidence            999998765

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=98.43  E-value=1.5e-10  Score=52.44  Aligned_cols=70  Identities=14%  Similarity=0.120  Sum_probs=44.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCE--Eeccc---ce----EEEEEEecCC--CeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDI--ELTFH---KY----FQVHEWFLGN--NTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~--~~~~~---~~----~~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      +|+.+.|.|...+.+.+.+.|++...  .....   ..    ..........  ......|.|.+++.+|+|.|.|.+.+
T Consensus        13 ~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   92 (110)
T 1u3h_A           13 EGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAASA   92 (110)
Confidence            58899999998777778899998532  11100   00    0000000010  22235799999999999999999886


Q ss_pred             C
Q psy11826         71 P   71 (83)
Q Consensus        71 ~   71 (83)
                      .
T Consensus        93 ~   93 (110)
T 1u3h_A           93 N   93 (110)
Confidence            4

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=98.90  E-value=2.4e-08  Score=45.51  Aligned_cols=66  Identities=15%  Similarity=0.179  Sum_probs=43.4

Q ss_pred             CCceEEEEeEeCcc-CCCeEEEEeCC--E--E-ec-----c-----cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEE
Q psy11826          2 LGRKITFFCMAEGF-PRPHITWTKDD--I--E-LT-----F-----HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE   65 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~~~~w~~~~--~--~-~~-----~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   65 (83)
                      +|+.+.|.|...+. +.+.+.|++..  .  . +.     .     ..++....   ........|.|.+++.+|+|.|.
T Consensus        14 ~G~~vtL~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I~~~~~~DsG~Y~   90 (116)
T 1fo0_A           14 EKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNF---QKPKSSIGLIITATQIEDSAVYF   90 (116)
T ss_dssp             TTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEE---EGGGTEEEEEECSCCGGGCEEEE
T ss_pred             cCCcEEEEeEecCCCCCeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEE---eCCCCEEEEEECCCChhhCEEEE
Confidence            58999999998766 55689998732  1  1 10     0     01111110   11122457999999999999999


Q ss_pred             EEeeC
Q psy11826         66 CVADN   70 (83)
Q Consensus        66 C~~~~   70 (83)
                      |.+.+
T Consensus        91 C~~~~   95 (116)
T 1fo0_A           91 CAMRG   95 (116)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            99986

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.90  E-value=2.1e-08  Score=49.91  Aligned_cols=69  Identities=13%  Similarity=0.440  Sum_probs=45.6

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEeCC--EEec----------------ccceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTKDD--IELT----------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~~~--~~~~----------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      ..|+.+.|.|.+.+.+  .+.+.|++..  ....                ...++.....   ......+|.|.+++.+|
T Consensus        13 ~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~v~~~D   89 (215)
T 1c5d_H           13 QPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRD---TSKSQVFLKMNSLQTED   89 (215)
T ss_dssp             CTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEE---TTTTEEEEEESSCCGGG
T ss_pred             cCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEee---CCCceEEEEECCCCccc
Confidence            3689999999988764  5789999742  1110                0112222111   11124579999999999


Q ss_pred             CeEEEEEeeCCC
Q psy11826         61 AGYYECVADNPF   72 (83)
Q Consensus        61 ~g~y~C~~~~~~   72 (83)
                      +|.|.|.+.+..
T Consensus        90 ~G~Y~C~~~~~~  101 (215)
T 1c5d_H           90 TAIYFCTREDGW  101 (215)
T ss_dssp             CEEEEEEECCSS
T ss_pred             CEEEEEEEecCC
Confidence            999999998763

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.89  E-value=6.6e-09  Score=52.89  Aligned_cols=67  Identities=16%  Similarity=0.386  Sum_probs=44.3

Q ss_pred             CCceEEEEeEeCc--cCCCeEEEEeCC--EEecc-----------------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEG--FPRPHITWTKDD--IELTF-----------------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~--~~~~~~~w~~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      +|+.+.|.|.+.+  .+.+.+.|++..  .....                 ..++.+..   .......+|.|.+++.+|
T Consensus        20 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I~~v~~~D   96 (256)
T 3juy_B           20 PGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTA---DTSANTAYMELRSLRSAD   96 (256)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEE---ETTTTEEEEEECSCCGGG
T ss_pred             CCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEE---ecCCCEEEEEECCCCccc
Confidence            6899999999877  367889999632  11100                 01121111   011123469999999999


Q ss_pred             CeEEEEEeeCC
Q psy11826         61 AGYYECVADNP   71 (83)
Q Consensus        61 ~g~y~C~~~~~   71 (83)
                      +|.|.|.+.+.
T Consensus        97 sG~Y~C~~~~~  107 (256)
T 3juy_B           97 TAVYYCARVGE  107 (256)
T ss_dssp             CEEEEEEECCC
T ss_pred             CEEEEEeEEec
Confidence            99999999886

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.89  E-value=6e-09  Score=53.05  Aligned_cols=66  Identities=21%  Similarity=0.349  Sum_probs=45.2

Q ss_pred             CCceEEEEeEeCccCCC-eEEEEeC--CEEecc------------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRP-HITWTKD--DIELTF------------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC   66 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-~~~w~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C   66 (83)
                      .|+.+.|.|.+.+.+.+ .+.|++.  +.....            ..++....     ......|.|.+++.+|+|.|.|
T Consensus       155 ~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C  229 (257)
T 3gkz_A          155 PGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSG-----SGTSYSLTISSMEAEDAASYFC  229 (257)
T ss_dssp             TTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEE
T ss_pred             CCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEec-----CCCEEEEEECCCChHHCEEEEE
Confidence            58899999999988877 8999973  221110            01111110     0113469999999999999999


Q ss_pred             EeeCCC
Q psy11826         67 VADNPF   72 (83)
Q Consensus        67 ~~~~~~   72 (83)
                      .+.+..
T Consensus       230 ~~~~~~  235 (257)
T 3gkz_A          230 HQWSSF  235 (257)
T ss_dssp             EECSSS
T ss_pred             EEccCC
Confidence            998743

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=98.89  E-value=4.4e-08  Score=45.15  Aligned_cols=66  Identities=17%  Similarity=0.284  Sum_probs=43.3

Q ss_pred             CCceEEEEeEeCcc--CCCeEEEEeCC--EE----ecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGF--PRPHITWTKDD--IE----LTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~--~~~~~~w~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      +|+.+.|.|...+.  +.+.+.|++..  ..    +....++.....   .......|.|.+++.+|+|.|.|.+..
T Consensus        14 ~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (121)
T 2i24_N           14 TGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVN---RGSKSFSLRINDLTVKDSGTYRCKPES   87 (121)
T ss_dssp             TTCCEEEEEEECSCCCCEEEEEEEEECTTCSCCEEECSBTTEEEEEE---TTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCcEEEEeEccCCCCCCCEEEEEEeCCCCCceeeEecCCCeEEEec---CCCCEEEEEECCCChhhCEEEEEEEec
Confidence            68999999998764  34679999742  21    111122222111   111246799999999999999999863

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=98.88  E-value=8.4e-08  Score=48.53  Aligned_cols=67  Identities=18%  Similarity=0.379  Sum_probs=45.9

Q ss_pred             CCceEEEEeEeCccC-----CCeEEEEeCC--E--E-ecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCe
Q psy11826          2 LGRKITFFCMAEGFP-----RPHITWTKDD--I--E-LTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAG   62 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~-----~~~~~w~~~~--~--~-~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   62 (83)
                      .|+.+.|.|.+.+.+     .+.+.|++..  .  . +..         ..++....     ......|.|.+++.+|+|
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~D~G   89 (247)
T 1svz_A           15 LGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG-----SGTDFTLKISRVEAEDLG   89 (247)
T ss_dssp             TTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred             CCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEecc-----CCCEEEEEECCCCHHHCE
Confidence            689999999998887     6889999732  1  1 100         11121110     011347999999999999


Q ss_pred             EEEEEeeCCCc
Q psy11826         63 YYECVADNPFA   73 (83)
Q Consensus        63 ~y~C~~~~~~g   73 (83)
                      .|.|.+.+..+
T Consensus        90 ~Y~C~~~n~~~  100 (247)
T 1svz_A           90 IYYCFQGSHFP  100 (247)
T ss_dssp             EEEEEECSSSS
T ss_pred             EEEEEEccCCc
Confidence            99999988644

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.88  E-value=1.5e-08  Score=51.95  Aligned_cols=67  Identities=19%  Similarity=0.384  Sum_probs=44.9

Q ss_pred             CCceEEEEeEeCccCC--CeEEEEeCC--EE---ec----c----------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFPR--PHITWTKDD--IE---LT----F----------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~--~~~~w~~~~--~~---~~----~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.|.|.+.+.+.  +.+.|++..  ..   +.    .          ..+..+..   ........|.|.+++.+|
T Consensus       152 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~~~D  228 (264)
T 2gjj_A          152 TGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTV---DTSSSTAFMQLNSLTSED  228 (264)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEE---ETTTTEEEEEECSCCGGG
T ss_pred             CCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEE---cCCCCEEEEEECcCCccc
Confidence            5889999999887764  789999853  21   10    0          01111111   011124579999999999


Q ss_pred             CeEEEEEeeCC
Q psy11826         61 AGYYECVADNP   71 (83)
Q Consensus        61 ~g~y~C~~~~~   71 (83)
                      +|.|.|.+.|.
T Consensus       229 sG~Y~C~a~n~  239 (264)
T 2gjj_A          229 SADYYCVRSGN  239 (264)
T ss_dssp             CEEEEEEEECS
T ss_pred             CEEEEEEEecC
Confidence            99999999885

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.88  E-value=2.5e-09  Score=54.81  Aligned_cols=71  Identities=14%  Similarity=0.291  Sum_probs=47.9

Q ss_pred             CceEEEEeEeCc-cCCC-eEEEEeCCEEecccceEEEE--E----EecCCCeEEEEEEEccCCCCC-CeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEG-FPRP-HITWTKDDIELTFHKYFQVH--E----WFLGNNTIKSKMEIDPATQKD-AGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~g   73 (83)
                      |+.+.|.|.+.+ .|.| .+.|+++|..+.........  .    .........+.|.+......| .|.|.|.+.+...
T Consensus       164 g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l  243 (270)
T 3qib_D          164 TQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  243 (270)
T ss_dssp             HSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCB
T ss_pred             CCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCC
Confidence            678999999888 5666 78999999888653211000  0    001122334578888887777 8999999987654

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.88  E-value=4.7e-09  Score=52.87  Aligned_cols=69  Identities=13%  Similarity=0.174  Sum_probs=45.1

Q ss_pred             CceEEEEeEeCcc-CC-CeEEEEe-CCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          3 GRKITFFCMAEGF-PR-PHITWTK-DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         3 g~~~~~~C~~~~~-~~-~~~~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      |+.+.+.|.+.+. |. +.+.|++ ++..+......... ..+......+.|.|..... + |.|.|.+.+....
T Consensus       145 g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~~~~~~~~-~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~  216 (230)
T 1ypz_F          145 HKTGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQEGDTL-KTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK  216 (230)
T ss_dssp             HSCEEEEEEEEEESSCCCEEEEECTTSSCBCCCEECCCE-EETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred             CCcceEEEEEeeecCCCeEEEEEccCCeEccccccceee-cCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence            5678999998876 65 5899999 77655432111111 1112223346788887775 4 8999999987664

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.88  E-value=4.1e-09  Score=54.15  Aligned_cols=71  Identities=21%  Similarity=0.448  Sum_probs=47.0

Q ss_pred             CCceEEEEeEeCcc-CCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+. |.| .+.|++++..+.........  ........+.|.|......| |.|.|.+.|.....
T Consensus       143 ~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~--~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~  215 (261)
T 2xqy_G          143 TGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVL--QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST  215 (261)
T ss_dssp             CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEE--ETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTE
T ss_pred             CCCcEEEEEEEEeEeCCCCEEEEecCCCcCceEecCcee--cCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCc
Confidence            47889999998875 766 89999987654321100000  01112234679998888877 99999999866543

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=98.87  E-value=1.1e-08  Score=46.10  Aligned_cols=71  Identities=17%  Similarity=0.156  Sum_probs=44.0

Q ss_pred             CCceEEEEeEe-CccCCCeEEEEeCC-EEecc---cceEEEEEEec-CCCe---EEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          2 LGRKITFFCMA-EGFPRPHITWTKDD-IELTF---HKYFQVHEWFL-GNNT---IKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~-~~~~~~~~~w~~~~-~~~~~---~~~~~~~~~~~-~~~~---~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .|+.+.|.|.. .+.+.+.+.|++.. ..+..   ........... ....   ...+|.|.+++.+|+|.|.|.+.+..
T Consensus        17 ~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~   96 (110)
T 2ptt_A           17 TGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKEDKGTYYMRVLRET   96 (110)
T ss_dssp             TTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECTTTCCEEESSCCGGGCEEEEEEEESSS
T ss_pred             cCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeCCCccEEECCCCcccCeEEEEEEEcCC
Confidence            58999999997 66777899999832 21110   00000000000 0000   12469999999999999999998755

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.87  E-value=7.5e-10  Score=56.83  Aligned_cols=73  Identities=15%  Similarity=0.358  Sum_probs=36.9

Q ss_pred             CCceEEEEeEeCcc-CCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      .|+.+.|.|.+.+. |.| .+.|++++..+........ ...+......+.|.|..+...| |.|.|.+.|......
T Consensus       147 ~g~~v~L~C~~~g~~P~pi~v~W~k~g~~~~~~~~~~~-~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~  221 (257)
T 3bn9_D          147 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAV-LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  221 (257)
T ss_dssp             ------CCCEEEEEBSSCCEEEETTTTCCSSCEECCCE-ECTTSCEEEEEECCCC--------CEEEEEEEGGGTEE
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeeCCCcCCcEecCCe-EcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcC
Confidence            46778999998885 777 8999998865322110000 0011122334568888777777 999999998765433

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.87  E-value=2.2e-08  Score=51.45  Aligned_cols=65  Identities=15%  Similarity=0.189  Sum_probs=44.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|++++|.|.+.+ +.+.+.|++++..+.....   .. ..........|.|.+++.+|+|.|.|.+.+.
T Consensus        20 ~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~---~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~   84 (257)
T 1b6u_A           20 SEETVILQCWSDV-RFQHFLLHREGKFKDTLHL---IG-EHHDGVSKANFSIGPMMQDLAGTYRCYGSVT   84 (257)
T ss_dssp             SSCCEEEEEEESS-CCSEEEEEEESTTCEEEEE---EC-BCCTTCEEEEEEECSCCTTTCEEEEEEEECS
T ss_pred             CCCCEEEEEecCC-CCcEEEEEECCCCCCccee---ee-eccCCCceEEEEeecCCcccCEEEEEeEecc
Confidence            5899999999864 4678999998754321100   00 0011123467999999999999999998753

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.87  E-value=1.7e-08  Score=50.66  Aligned_cols=70  Identities=14%  Similarity=0.311  Sum_probs=46.3

Q ss_pred             CCCceEEEEeEeCccCC----CeEEEEeC--CEEec----------------ccceEEEEEEecCCCeEEEEEEEccCCC
Q psy11826          1 MLGRKITFFCMAEGFPR----PHITWTKD--DIELT----------------FHKYFQVHEWFLGNNTIKSKMEIDPATQ   58 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~----~~~~w~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   58 (83)
                      ..|+.+.|.|.+.+.+.    +.+.|++.  +..+.                ...++.....  . ......|.|.+++.
T Consensus        13 ~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~--~-~~~~~~L~I~~v~~   89 (228)
T 3bae_H           13 KPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKD--T-SRDMVFMKITSVDT   89 (228)
T ss_dssp             CTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEE--T-TTTEEEEEECSCCG
T ss_pred             cCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEc--C-CCCeEEEEEcCCCc
Confidence            36899999999988764    78999873  22110                0112221110  0 11235799999999


Q ss_pred             CCCeEEEEEeeCCCc
Q psy11826         59 KDAGYYECVADNPFA   73 (83)
Q Consensus        59 ~~~g~y~C~~~~~~g   73 (83)
                      +|+|.|.|.+.+..|
T Consensus        90 ~D~G~Y~C~~~~~~g  104 (228)
T 3bae_H           90 ADTATYYCARRGFYG  104 (228)
T ss_dssp             GGCEEEEEEEEEEST
T ss_pred             ccCEEEEEEEecCCC
Confidence            999999999987653

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.86  E-value=3.8e-09  Score=53.34  Aligned_cols=71  Identities=15%  Similarity=0.292  Sum_probs=47.5

Q ss_pred             CceEEEEeEeCcc-CCC-eEEEEeCCEEecccceEEEEEE------ecCCCeEEEEEEEccCCCCC-CeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEW------FLGNNTIKSKMEIDPATQKD-AGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~g   73 (83)
                      |+.+.|.|.+.+. |.+ .+.|+++|..+...........      ........+.|.|......| .|.|.|.+.+...
T Consensus       139 g~~v~l~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l  218 (245)
T 4ei6_B          139 TQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  218 (245)
T ss_dssp             HSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             CCceEEEEEEeeEeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCC
Confidence            6789999998884 444 7999999988765322110000      01122334568888888778 8999999987543

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=98.86  E-value=9.1e-10  Score=56.64  Aligned_cols=65  Identities=14%  Similarity=0.117  Sum_probs=46.2

Q ss_pred             CCceEEEEeEeCccCC--CeEEEEeC-CEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFPR--PHITWTKD-DIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~--~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+ |.  +.+.|+++ +..+.........    .    ...|.|.+++.+|.|.|.|.+.|..+..
T Consensus       103 ~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~----~----~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  170 (292)
T 4dkd_C          103 EDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFS----P----WHGFTIHRAKFIQSQDYQCSALMGGRKV  170 (292)
T ss_dssp             TTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECC----S----SSCCEETTCCGGGCSEEEEEECSTTSCE
T ss_pred             CCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCccccc----C----CceEEECCCCHHHCeEEEEEEEeCCCce
Confidence            5888999999887 44  78999986 4444333222110    0    1238999999999999999999876644

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=98.86  E-value=1.9e-08  Score=46.49  Aligned_cols=66  Identities=24%  Similarity=0.391  Sum_probs=44.4

Q ss_pred             CCceEEEEeEeCccC----CCeEEEEeCC--EE---ecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeE
Q psy11826          2 LGRKITFFCMAEGFP----RPHITWTKDD--IE---LTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~----~~~~~w~~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   63 (83)
                      +|+.++|.|...+.+    .+.+.|++..  ..   +..         ..++....     ......|.|.+++.+|+|.
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~sL~I~~v~~~DsG~   89 (126)
T 4ffy_L           15 LGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSG-----SETDFTLTIDSVETDDAAT   89 (126)
T ss_dssp             TTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGGCEE
T ss_pred             CCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEec-----CCCEEEEEECCCCHHHCEE
Confidence            589999999988776    5679999732  11   110         11222110     1123579999999999999


Q ss_pred             EEEEeeCCC
Q psy11826         64 YECVADNPF   72 (83)
Q Consensus        64 y~C~~~~~~   72 (83)
                      |.|.+.+..
T Consensus        90 Y~C~~~~~~   98 (126)
T 4ffy_L           90 YYCQQNNED   98 (126)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEEecCC
Confidence            999998753

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.85  E-value=1.4e-08  Score=50.98  Aligned_cols=68  Identities=19%  Similarity=0.361  Sum_probs=45.3

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEeCC--EEecc-----------------cceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTKDD--IELTF-----------------HKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      .+|+.+.|.|.+.+.+  .+.+.|++..  ..+..                 ..++....  +. .....+|.|.+++.+
T Consensus        13 ~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~--~~-~~~~~sL~I~~v~~~   89 (227)
T 1mju_H           13 KPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTV--DT-SSSTAYMQLSSLTSD   89 (227)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEE--ET-TTTEEEEEECSCCGG
T ss_pred             cCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEE--eC-CCCeEEEEECCCCcc
Confidence            3689999999988776  6789999743  21100                 01111111  00 112457999999999


Q ss_pred             CCeEEEEEeeCC
Q psy11826         60 DAGYYECVADNP   71 (83)
Q Consensus        60 ~~g~y~C~~~~~   71 (83)
                      |+|.|.|.+.+.
T Consensus        90 D~G~Y~C~~~~~  101 (227)
T 1mju_H           90 DSAVYYCANKLG  101 (227)
T ss_dssp             GCEEEEEEEEET
T ss_pred             cCEEEEEEECCC
Confidence            999999999875

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.85  E-value=3.5e-09  Score=54.64  Aligned_cols=66  Identities=18%  Similarity=0.382  Sum_probs=45.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--EEec-----------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCe
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--IELT-----------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG   62 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   62 (83)
                      +|+.+.|.|.+.+.+.+.+.|++.+  ....                 ...++....   . .....+|.|.+++.+|+|
T Consensus        38 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~-~~~~~sL~I~~v~~~D~G  113 (279)
T 2wbj_D           38 SGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINH---A-SLTLSTLTVTSAHPEDSS  113 (279)
T ss_dssp             TTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEE---C-SSSEEEEEESSCCGGGCE
T ss_pred             CCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEe---C-CCCEEEEEEccCCccCCE
Confidence            5889999999988888899999853  1100                 001121111   0 122457999999999999


Q ss_pred             EEEEEeeCC
Q psy11826         63 YYECVADNP   71 (83)
Q Consensus        63 ~y~C~~~~~   71 (83)
                      .|.|.+.+.
T Consensus       114 ~Y~C~~~~~  122 (279)
T 2wbj_D          114 FYICSARDL  122 (279)
T ss_dssp             EEEEEEEET
T ss_pred             EEEEEEccc
Confidence            999999883

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=98.85  E-value=2.7e-08  Score=45.19  Aligned_cols=65  Identities=17%  Similarity=0.316  Sum_probs=43.7

Q ss_pred             CCceEEEEeEeCccC------CCeEEEEeCC--E---Eecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGFP------RPHITWTKDD--I---ELTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~------~~~~~w~~~~--~---~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   61 (83)
                      +|+.+.|.|...+.+      .+.+.|++..  .   .+..         ..++....     ......|.|.+++.+|+
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~Ds   89 (114)
T 1eeq_A           15 LGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSG-----SGTDFTLTISSLQAEDV   89 (114)
T ss_dssp             TTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGC
T ss_pred             CCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEee-----cCCEEEEEECCCCcccC
Confidence            689999999987766      3679999742  1   1110         11121111     11134799999999999


Q ss_pred             eEEEEEeeCC
Q psy11826         62 GYYECVADNP   71 (83)
Q Consensus        62 g~y~C~~~~~   71 (83)
                      |.|.|.+.+.
T Consensus        90 G~Y~C~~~~~   99 (114)
T 1eeq_A           90 AVYYCQQYYS   99 (114)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEEEEeeC
Confidence            9999999875

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=98.85  E-value=2e-07  Score=42.20  Aligned_cols=69  Identities=13%  Similarity=0.279  Sum_probs=42.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CE--E-ec---ccceEEE-----EEEecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DI--E-LT---FHKYFQV-----HEWFLGNNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~--~-~~---~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      +|+.++|.|.....+.+.+.|++.  +.  . +.   .......     ..+........ .|.|.+++.+|+|.|.|.+
T Consensus        15 ~G~~vtL~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~-~L~I~~~~~~Dsg~Y~C~~   93 (112)
T 1fo0_B           15 RGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDT-ELRLQVANMSQGRTLYCTC   93 (112)
T ss_dssp             TTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETT-EEEEEEESCCSCEEEEEEE
T ss_pred             cCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcCCCC-eEEEcCCCHhHCEEEEEEE
Confidence            689999999987666778999973  22  1 11   0000000     00000000011 6999999999999999998


Q ss_pred             eCC
Q psy11826         69 DNP   71 (83)
Q Consensus        69 ~~~   71 (83)
                      .+.
T Consensus        94 ~~~   96 (112)
T 1fo0_B           94 SAD   96 (112)
T ss_dssp             ESS
T ss_pred             EcC
Confidence            764

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.85  E-value=2.9e-10  Score=56.54  Aligned_cols=71  Identities=13%  Similarity=0.229  Sum_probs=44.7

Q ss_pred             CCCceEEEEeEeCccCC-----CeEEEEeCCEEecc---cceEEEEEEecCC--------CeEEEEEEEccCCCCCCeEE
Q psy11826          1 MLGRKITFFCMAEGFPR-----PHITWTKDDIELTF---HKYFQVHEWFLGN--------NTIKSKMEIDPATQKDAGYY   64 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~-----~~~~w~~~~~~~~~---~~~~~~~~~~~~~--------~~~~~~l~i~~~~~~~~g~y   64 (83)
                      .+|+.+.|.|.+.+.+.     +.+.|++++.....   .............        .....+|.|.+++.+|.|.|
T Consensus         8 ~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   87 (222)
T 4i0k_A            8 LVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDEGSY   87 (222)
T ss_dssp             CTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGCSCE
T ss_pred             ECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccCEEE
Confidence            36899999999877654     68999987633210   0000000000000        01134699999999999999


Q ss_pred             EEEeeCC
Q psy11826         65 ECVADNP   71 (83)
Q Consensus        65 ~C~~~~~   71 (83)
                      .|.+.+.
T Consensus        88 ~C~~~~~   94 (222)
T 4i0k_A           88 TCFVSIQ   94 (222)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            9999864

>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility complex), HLA(human leukocyte A immune system; 1.09A {Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B 1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B 1gzp_B* 1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B 1i1f_B 1i1y_B 1duz_B* ...

Probab=98.85  E-value=4.2e-08  Score=43.83  Aligned_cols=68  Identities=13%  Similarity=0.117  Sum_probs=42.0

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      |+.+.+.|.+.|+.++  .+.|.++|..+............+......+.|.+   ..++.+.|.|.+.+...
T Consensus        19 ~~~~~L~C~~~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~ytC~V~H~~l   88 (100)
T 1k5n_B           19 GKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEF---TPTEKDEYACRVNHVTL   88 (100)
T ss_dssp             TSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEE---CCCSSCCEEEEEECTTC
T ss_pred             CCcEEEEEEEEeeECCceEEEEEECCEECCCcccCceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEcCCC
Confidence            4578999999996544  78999999887432111111111222333445554   45667889999987643

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=98.84  E-value=4e-08  Score=46.71  Aligned_cols=65  Identities=18%  Similarity=0.238  Sum_probs=44.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--E---Eecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--I---ELTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~---~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|...+.+.+.+.|++..  .   .+..         ..++....     ......|.|.+++.+|+|.|.|.
T Consensus        30 ~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~-----~~~~~sL~I~~v~~~DsG~Y~C~  104 (146)
T 2yc1_B           30 PGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSG-----SGTDFTLTISSLEPEDFAIYYCQ  104 (146)
T ss_dssp             TTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCSEEEEE
T ss_pred             cCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEec-----CCCEEEEEECCCCHHHCEEEEEE
Confidence            6899999999887777889999743  1   1110         01121110     01134799999999999999999


Q ss_pred             eeCC
Q psy11826         68 ADNP   71 (83)
Q Consensus        68 ~~~~   71 (83)
                      +.+.
T Consensus       105 ~~~~  108 (146)
T 2yc1_B          105 QYRY  108 (146)
T ss_dssp             ECSS
T ss_pred             EecC
Confidence            9764

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=98.84  E-value=1.1e-08  Score=52.05  Aligned_cols=66  Identities=14%  Similarity=0.266  Sum_probs=45.2

Q ss_pred             CCceEEEEeEeCcc--CCCeEEEEeCC--EEec------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEE
Q psy11826          2 LGRKITFFCMAEGF--PRPHITWTKDD--IELT------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE   65 (83)
Q Consensus         2 ~g~~~~~~C~~~~~--~~~~~~w~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   65 (83)
                      +|+.+.|.|.+.+.  +.+.+.|++..  ....            ...++....     ......|.|.+++.+|+|.|.
T Consensus        16 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG~Y~   90 (256)
T 3ux9_B           16 PGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSK-----SGTSASLAITGLQSEDEADYY   90 (256)
T ss_dssp             TTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE-----ETTEEEEEECSCCGGGCEEEE
T ss_pred             CCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEc-----cCCEEEEEECCCChhhCEEEE
Confidence            68999999998876  77899999732  1110            011222111     011347999999999999999


Q ss_pred             EEeeCCC
Q psy11826         66 CVADNPF   72 (83)
Q Consensus        66 C~~~~~~   72 (83)
                      |.+.+..
T Consensus        91 C~~~~~~   97 (256)
T 3ux9_B           91 CQVRDNN   97 (256)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9998754

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.84  E-value=2.6e-08  Score=51.15  Aligned_cols=68  Identities=16%  Similarity=0.314  Sum_probs=45.3

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeCC--EEecc-----------------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKDD--IELTF-----------------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      +|+.+.|.|.+.+.+  .+.+.|++..  ..+..                 ..++.+...  . ......|.|.+++.+|
T Consensus        20 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~--~-~~~~~sL~I~~v~~~D   96 (261)
T 2xqy_G           20 PGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVD--K-SSSTVYIQLSSLTSED   96 (261)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEE--G-GGTEEEEEECSCCGGG
T ss_pred             CCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEec--C-CCCEEEEEEcCCCccc
Confidence            689999999988766  6789999752  21100                 011111110  0 1123579999999999


Q ss_pred             CeEEEEEeeCCC
Q psy11826         61 AGYYECVADNPF   72 (83)
Q Consensus        61 ~g~y~C~~~~~~   72 (83)
                      +|.|.|.+.+..
T Consensus        97 sG~Y~C~~~~~~  108 (261)
T 2xqy_G           97 SAVYYCGRLGYV  108 (261)
T ss_dssp             CEEEEEEEECTT
T ss_pred             CeEEEEEEecCC
Confidence            999999998853

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.84  E-value=3.3e-08  Score=50.71  Aligned_cols=67  Identities=16%  Similarity=0.416  Sum_probs=43.8

Q ss_pred             CCceEEEEeEeCccCC--CeEEEEeC--CEEec-------------------ccceEEEEEEecCCCeEEEEEEEccCCC
Q psy11826          2 LGRKITFFCMAEGFPR--PHITWTKD--DIELT-------------------FHKYFQVHEWFLGNNTIKSKMEIDPATQ   58 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~--~~~~w~~~--~~~~~-------------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~   58 (83)
                      .|+.+.|.|.+.+.+.  +.+.|++.  +..+.                   ...++.....   .......|.|.+++.
T Consensus       165 ~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L~I~~v~~  241 (268)
T 1x9q_A          165 PGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRD---DSKSSVYLQMNNLRV  241 (268)
T ss_dssp             TTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEE---GGGTEEEEEECSCCG
T ss_pred             CCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEe---CCCCEEEEEECCCCH
Confidence            5889999999887653  78999874  22111                   0111111110   011135799999999


Q ss_pred             CCCeEEEEEeeCC
Q psy11826         59 KDAGYYECVADNP   71 (83)
Q Consensus        59 ~~~g~y~C~~~~~   71 (83)
                      +|+|.|.|.+.+.
T Consensus       242 ~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          242 EDTGIYYCTGASY  254 (268)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             HHCEEEEEEEccC
Confidence            9999999999764

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=3.2e-09  Score=49.63  Aligned_cols=71  Identities=23%  Similarity=0.268  Sum_probs=44.0

Q ss_pred             CCceEEEEeEeCcc-CCCeEEEEeCCEE----ecccceEEEEEEec-----CCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGF-PRPHITWTKDDIE----LTFHKYFQVHEWFL-----GNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~~~~w~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      +|+.+.|.|...+. +.+.+.|++.+..    +.............     ........|.|.+++.+|+|.|.|.+.+.
T Consensus        22 ~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  101 (136)
T 2d9c_A           22 AGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRK  101 (136)
T ss_dssp             TTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTTTCEEEEEEEEEC
T ss_pred             CCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHHHCEEEEEEEEeC
Confidence            58999999998765 5678999996511    10000000000000     00111457999999999999999998764


Q ss_pred             C
Q psy11826         72 F   72 (83)
Q Consensus        72 ~   72 (83)
                      .
T Consensus       102 ~  102 (136)
T 2d9c_A          102 G  102 (136)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.84  E-value=7.4e-09  Score=47.43  Aligned_cols=73  Identities=19%  Similarity=0.310  Sum_probs=41.6

Q ss_pred             CCceEEEEeEeCc----cCCCeEEEEeCCEE------ec-ccceEEEE----------EEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEG----FPRPHITWTKDDIE------LT-FHKYFQVH----------EWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~----~~~~~~~w~~~~~~------~~-~~~~~~~~----------~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.|.|....    .+.+.+.|++.+..      +. ........          ...........+|.|.+++.+|
T Consensus        13 ~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   92 (124)
T 1neu_A           13 VGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNLDYSD   92 (124)
T ss_dssp             TTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSCCGGG
T ss_pred             eCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEEEccCChhh
Confidence            5899999999743    24678999974320      10 00000000          0000000112479999999999


Q ss_pred             CeEEEEEeeCCCcc
Q psy11826         61 AGYYECVADNPFAI   74 (83)
Q Consensus        61 ~g~y~C~~~~~~g~   74 (83)
                      +|.|.|.+.+..+.
T Consensus        93 ~G~Y~C~v~~~~~~  106 (124)
T 1neu_A           93 NGTFTCDVKNPPDI  106 (124)
T ss_dssp             CEEEEEEEEC----
T ss_pred             CEEEEEEEEcCCCC
Confidence            99999999987654

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.83  E-value=1.9e-08  Score=51.71  Aligned_cols=63  Identities=17%  Similarity=0.256  Sum_probs=43.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.++|.|.+.+. .+.+.|++++..+........    .........|.|.+++  |.|.|.|.+.+.
T Consensus       120 ~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~----~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~  182 (257)
T 1b6u_A          120 AGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGP----KVNGTFQADFPLGPAT--HGGTYRCFGSFR  182 (257)
T ss_dssp             TTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBC----CSSSCCBEEEEEEECC--SCEEEEEEEECS
T ss_pred             CCCEEEEEEeCCCC-CcEEEEEECCcccCccccccc----ccCCceeEEEEecccc--cCEEEEEEEEcC
Confidence            58999999998765 468999999875543211000    0001113578888988  999999999864

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.83  E-value=2.2e-08  Score=45.55  Aligned_cols=67  Identities=18%  Similarity=0.435  Sum_probs=43.1

Q ss_pred             CCceEEEEeEeCcc-CCCeEEEEeCC--E--E-ecc------------cceEEEEEEecCCCeEEEEEEEccCCCCCCeE
Q psy11826          2 LGRKITFFCMAEGF-PRPHITWTKDD--I--E-LTF------------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~~~~w~~~~--~--~-~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   63 (83)
                      +|+.+.|.|..... +.+.+.|++..  .  . +..            ..++.....   .......|.|.+++.+|+|.
T Consensus        14 ~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~~~~~DsG~   90 (116)
T 1tvd_A           14 SGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHI---LTQKAFHLVISPVRTEDSAT   90 (116)
T ss_dssp             TTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEE---GGGTEEEEEESSCCGGGCEE
T ss_pred             cCCeEEEEeEeEcCCCCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEe---cCCCEEEEEEccCChHHCEE
Confidence            58999999997653 55679998732  1  1 110            111111110   01123579999999999999


Q ss_pred             EEEEeeCC
Q psy11826         64 YECVADNP   71 (83)
Q Consensus        64 y~C~~~~~   71 (83)
                      |.|.+.+.
T Consensus        91 Y~C~~~~~   98 (116)
T 1tvd_A           91 YYCAFTLP   98 (116)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEeCC
Confidence            99999873

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.82  E-value=1.1e-07  Score=47.66  Aligned_cols=69  Identities=16%  Similarity=0.392  Sum_probs=45.2

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEeCC--EE---ecc--------------cceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTKDD--IE---LTF--------------HKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~~~--~~---~~~--------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      .+|+.+.|.|.+.+.+  .+.+.|++..  ..   +..              ..++.....   .......|.|.+++.+
T Consensus        13 ~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~~v~~~   89 (223)
T 1dee_B           13 QPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRD---NSKNTLYLQMNSLRAE   89 (223)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEE---TTTTEEEEEECSCCGG
T ss_pred             cCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEec---CCCCEEEEEECCCCHH
Confidence            3689999999987765  4789999742  11   100              011111110   0112357999999999


Q ss_pred             CCeEEEEEeeCCC
Q psy11826         60 DAGYYECVADNPF   72 (83)
Q Consensus        60 ~~g~y~C~~~~~~   72 (83)
                      |+|.|.|.+.+..
T Consensus        90 D~G~Y~C~~~~~~  102 (223)
T 1dee_B           90 DTAVYYCAKVKFY  102 (223)
T ss_dssp             GCEEEEEEEESSS
T ss_pred             HCEEEEEEEeccc
Confidence            9999999998864

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.82  E-value=2.3e-08  Score=50.40  Aligned_cols=63  Identities=19%  Similarity=0.424  Sum_probs=41.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--EEec------------c---cceEEEEEEecCCCeEEEEEEEccCCCCCCeEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--IELT------------F---HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY   64 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~~~~------------~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y   64 (83)
                      +|+.+.|.|.+.+ +.+.+.|++..  ....            .   ..++....    ......+|.|.+++.+|+|.|
T Consensus        16 ~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~sL~I~~v~~~D~G~Y   90 (240)
T 3q5y_A           16 KGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQ----FDDYHSEMNMSALELEDSAMY   90 (240)
T ss_dssp             TTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEE----CTTSCEEEEECSCCGGGCEEE
T ss_pred             CCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEe----CCCCEEEEEECcCChhHCEEE
Confidence            5899999999765 77899999821  1000            0   01111111    011245799999999999999


Q ss_pred             EEEee
Q psy11826         65 ECVAD   69 (83)
Q Consensus        65 ~C~~~   69 (83)
                      .|.+.
T Consensus        91 ~C~~~   95 (240)
T 3q5y_A           91 FCASS   95 (240)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99997

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.82  E-value=3.4e-09  Score=54.05  Aligned_cols=67  Identities=15%  Similarity=0.342  Sum_probs=44.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--EEecc---------------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--IELTF---------------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY   64 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y   64 (83)
                      .|+.+.|.|.+.+. .+.+.|++..  .....               ..++...    ........|.|.+++.+|+|.|
T Consensus       151 ~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~~v~~~DsG~Y  225 (256)
T 3tf7_C          151 TGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKAT----RTTQEDFFLTLESASPSQTSLY  225 (256)
T ss_dssp             TTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEE----CCSSSBCEEEESSCCGGGCEEE
T ss_pred             CCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEE----eCCCCeEEEEECCCCHHHCEEE
Confidence            58899999998876 7799999732  11100               0000000    0011234799999999999999


Q ss_pred             EEEeeCCCc
Q psy11826         65 ECVADNPFA   73 (83)
Q Consensus        65 ~C~~~~~~g   73 (83)
                      .|.+.|..|
T Consensus       226 ~C~a~n~~g  234 (256)
T 3tf7_C          226 FCASSDAPG  234 (256)
T ss_dssp             EEEEEEETT
T ss_pred             EEEecCCCC
Confidence            999988654

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=98.82  E-value=3.3e-08  Score=45.93  Aligned_cols=70  Identities=23%  Similarity=0.252  Sum_probs=45.2

Q ss_pred             CCceEEEEeEeCccC-CCeEEEEeC--CEE---ecc--c--------ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEE
Q psy11826          2 LGRKITFFCMAEGFP-RPHITWTKD--DIE---LTF--H--------KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE   65 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~-~~~~~w~~~--~~~---~~~--~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   65 (83)
                      .|+.+.|.|...+.. ...+.|++.  +..   +..  .        .++...   .........|.|.+++.+|+|.|.
T Consensus        15 ~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~---~~~~~~~~sL~I~~~~~~Dsg~Y~   91 (129)
T 3rrq_A           15 EGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVT---QLPNGRDFHMSVVRARRNDSGTYL   91 (129)
T ss_dssp             TTSCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEE---ECTTSSEEEEEESSCCGGGCEEEE
T ss_pred             CCCCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEE---EcCCCCEEEEEECCCChhHCEEEE
Confidence            589999999987654 457899862  211   110  0        111111   112223467999999999999999


Q ss_pred             EEeeCCCcc
Q psy11826         66 CVADNPFAI   74 (83)
Q Consensus        66 C~~~~~~g~   74 (83)
                      |.+.+..+.
T Consensus        92 C~~~~~~~~  100 (129)
T 3rrq_A           92 CGAISLAPK  100 (129)
T ss_dssp             EEEEECGGG
T ss_pred             EEEEecCCC
Confidence            999876553

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.81  E-value=6.7e-08  Score=48.30  Aligned_cols=70  Identities=16%  Similarity=0.382  Sum_probs=45.9

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEeCC--EE---ecc--------------cceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTKDD--IE---LTF--------------HKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~~~--~~---~~~--------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      ..|+.+.|.|.+.+.+  .+.+.|++..  ..   +..              ..++....   ........|.|.+++.+
T Consensus        13 ~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~I~~v~~~   89 (220)
T 2fbj_H           13 QPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISR---DNAKNSLYLQMSKVRSE   89 (220)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEE---CSSSCEEEEEECSCCGG
T ss_pred             cCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEe---eCCCCEEEEEECCCChh
Confidence            3689999999987765  5789998742  11   100              01111111   01122457999999999


Q ss_pred             CCeEEEEEeeCCCc
Q psy11826         60 DAGYYECVADNPFA   73 (83)
Q Consensus        60 ~~g~y~C~~~~~~g   73 (83)
                      |+|.|.|.+.+..+
T Consensus        90 DsG~Y~C~~~~~~~  103 (220)
T 2fbj_H           90 DTALYYCARLHYYG  103 (220)
T ss_dssp             GCEEEEEEEEETTT
T ss_pred             hCEEEEEEEecccc
Confidence            99999999987643

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=98.81  E-value=6.8e-08  Score=43.77  Aligned_cols=65  Identities=17%  Similarity=0.317  Sum_probs=43.3

Q ss_pred             CCceEEEEeEeCccC-----CCeEEEEeCC--E---Eecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCe
Q psy11826          2 LGRKITFFCMAEGFP-----RPHITWTKDD--I---ELTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAG   62 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~-----~~~~~w~~~~--~---~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   62 (83)
                      +|+.+.|.|...+.+     .+.+.|++..  .   .+..         ..++....     ......|.|.+++.+|+|
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~-----~~~~~~L~I~~v~~~DsG   89 (113)
T 1dlf_L           15 LGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSG-----SGTDFTLKISRVEAEDLG   89 (113)
T ss_dssp             TTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEECSCCGGGCE
T ss_pred             CCCCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEc-----cCCEEEEEECCCChHHCE
Confidence            689999999987765     4789998732  1   1110         01111110     111347999999999999


Q ss_pred             EEEEEeeCC
Q psy11826         63 YYECVADNP   71 (83)
Q Consensus        63 ~y~C~~~~~   71 (83)
                      .|.|.+.+.
T Consensus        90 ~Y~C~~~~~   98 (113)
T 1dlf_L           90 VYFCSQSTH   98 (113)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEEecC
Confidence            999999865

>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, immune system; HET: 16A; 1.32A {Gallus gallus} SCOP: b.1.1.0 PDB: 3p77_B* 4g43_B 4g42_B 4e0r_B 3bev_B 3bew_B 3jvg_C* 2yez_B 2yf5_B 2yf6_B 2yf1_B*

Probab=98.81  E-value=8.3e-08  Score=42.81  Aligned_cols=68  Identities=21%  Similarity=0.267  Sum_probs=42.1

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      |+.+.+.|.+.++.++  .+.|.++|..+............+..+...+.|.+.   .++.+.|.|.+.+...
T Consensus        18 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ytC~V~H~~l   87 (99)
T 3p73_B           18 GTKNVLNCFAAGFHPPKISITLMKDGVPMEGAQYSDMSFNDDWTFQRLVHADFT---PSSGSTYACKVEHETL   87 (99)
T ss_dssp             TSCEEEEEEEEEESSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEC---CCTTCCEEEEEECTTC
T ss_pred             CCCEEEEEEEeeeECCCeEEEEEECCeeCCceeecceEECCCCCEEEEEEEEEE---CCCCCEEEEEEEeCCC
Confidence            5678999999987554  789999998773221111112112223334455543   4567889999987543

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=98.81  E-value=3.5e-09  Score=53.26  Aligned_cols=78  Identities=12%  Similarity=0.218  Sum_probs=48.3

Q ss_pred             CCceEEEEeEeCccCC--CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.+.|.+.+.++  ..+.|++++..+...... ............+.|.|......| |.|.|.+.+..+......
T Consensus       146 ~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~-~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~  223 (232)
T 3qhz_H          146 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFP-AVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK  223 (232)
T ss_dssp             --CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECC-CEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEE
T ss_pred             CCCcEEEEEEEeeEeCCCeEEEEEECCEecceeecc-ceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEE
Confidence            3778999999887544  357799987533211100 001111223344678898888888 999999999877655544


Q ss_pred             EE
Q psy11826         80 RT   81 (83)
Q Consensus        80 ~~   81 (83)
                      .+
T Consensus       224 ~l  225 (232)
T 3qhz_H          224 RV  225 (232)
T ss_dssp             EC
T ss_pred             Ee
Confidence            43

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.80  E-value=6.7e-08  Score=49.45  Aligned_cols=65  Identities=15%  Similarity=0.269  Sum_probs=43.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEecc----c------------ceEEEEEEecCCCeEEEEEEEccCCCCCCeE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELTF----H------------KYFQVHEWFLGNNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~~----~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   63 (83)
                      .|+.+.|.|.+. .+.+.+.|++  .+.....    .            .++....    ......+|.|.+++.+|+|.
T Consensus        40 ~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~----~~~~~~sL~I~~v~~~D~G~  114 (268)
T 3pl6_D           40 KGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVR----PEGSVSTLKIQRTERGDSAV  114 (268)
T ss_dssp             TTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEEC----TTSSSEEEEECSCCGGGCEE
T ss_pred             CCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEe----cCCCEEEEEECCCCcccCEE
Confidence            589999999975 5778999998  2221110    0            1111111    11224579999999999999


Q ss_pred             EEEEeeCC
Q psy11826         64 YECVADNP   71 (83)
Q Consensus        64 y~C~~~~~   71 (83)
                      |.|.+.+.
T Consensus       115 Y~C~~~~~  122 (268)
T 3pl6_D          115 YLCATSAL  122 (268)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEecC
Confidence            99999873

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.80  E-value=6.6e-08  Score=49.59  Aligned_cols=67  Identities=16%  Similarity=0.331  Sum_probs=45.6

Q ss_pred             CCceEEEEeEeCccC-----CCeEEEEeCC--EE---ecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCe
Q psy11826          2 LGRKITFFCMAEGFP-----RPHITWTKDD--IE---LTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAG   62 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~-----~~~~~w~~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   62 (83)
                      +|+.+.|.|.+.+.+     .+.+.|++..  ..   +..         ..++....     ......|.|.+++.+|+|
T Consensus        29 ~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~DsG  103 (268)
T 1x9q_A           29 LGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSG-----SGTDFTLKINRVEAEDLG  103 (268)
T ss_dssp             TTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGGCE
T ss_pred             CCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEc-----CCCEEEEEECCCChhHCE
Confidence            689999999998876     4789999742  11   110         11122111     011347999999999999


Q ss_pred             EEEEEeeCCCc
Q psy11826         63 YYECVADNPFA   73 (83)
Q Consensus        63 ~y~C~~~~~~g   73 (83)
                      .|.|.+.+..+
T Consensus       104 ~Y~C~~~~~~~  114 (268)
T 1x9q_A          104 VYFCSQSTHVP  114 (268)
T ss_dssp             EEEEEECSSSS
T ss_pred             EEEEEEecCCC
Confidence            99999988643

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.79  E-value=9.6e-08  Score=48.37  Aligned_cols=67  Identities=19%  Similarity=0.366  Sum_probs=44.3

Q ss_pred             CCceEEEEeEeCcc--CCCeEEEEeCC--EE---ec--------------ccceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGF--PRPHITWTKDD--IE---LT--------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~--~~~~~~w~~~~--~~---~~--------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.|.|.+.+.  +.+.+.|++..  ..   +.              ...++.....   .......|.|.+++.+|
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~v~~~D   91 (242)
T 1hxm_B           15 LSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRI---PETSTSTLTIHNVEKQD   91 (242)
T ss_dssp             TTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEE---TTTTEEEEEECSCCGGG
T ss_pred             CCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEec---CCCcEEEEEECCCCccc
Confidence            58999999998775  66789999732  11   10              0111111110   11124579999999999


Q ss_pred             CeEEEEEeeCC
Q psy11826         61 AGYYECVADNP   71 (83)
Q Consensus        61 ~g~y~C~~~~~   71 (83)
                      +|.|.|.+.+.
T Consensus        92 ~G~Y~C~~~~~  102 (242)
T 1hxm_B           92 IATYYCALWEA  102 (242)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CEEEEEeeecC
Confidence            99999999875

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.79  E-value=1.8e-08  Score=45.79  Aligned_cols=80  Identities=16%  Similarity=0.236  Sum_probs=46.8

Q ss_pred             CCceEEEEeEeCcc--CCCeEEEEeCC-------EEecc--cceEEEE---EE--ecCCCeEEEEEEEccCCCCCCeEEE
Q psy11826          2 LGRKITFFCMAEGF--PRPHITWTKDD-------IELTF--HKYFQVH---EW--FLGNNTIKSKMEIDPATQKDAGYYE   65 (83)
Q Consensus         2 ~g~~~~~~C~~~~~--~~~~~~w~~~~-------~~~~~--~~~~~~~---~~--~~~~~~~~~~l~i~~~~~~~~g~y~   65 (83)
                      .|+.++|.|.....  ....+.|++..       ..+..  .......   ..  .........+|.|.+++.+|+|.|.
T Consensus        11 ~G~~v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~   90 (115)
T 2or7_A           11 AGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVVGDGGPYC   90 (115)
T ss_dssp             TTSCEEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGCEEEE
T ss_pred             cCCCEEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCCHHHCEEEE
Confidence            58999999997643  34679999864       11110  0000000   00  0000112347999999999999999


Q ss_pred             EEeeCCCcceeeEEEE
Q psy11826         66 CVADNPFAIDRRGFRT   81 (83)
Q Consensus        66 C~~~~~~g~~~~~~~~   81 (83)
                      |.+..........+.|
T Consensus        91 C~v~~~~~~~~~~v~L  106 (115)
T 2or7_A           91 CVVEIPGAFHFVDYML  106 (115)
T ss_dssp             EEECCTTSCEEEEEEE
T ss_pred             EEEECCCceeEEEEEE
Confidence            9998654433444433

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.79  E-value=1.2e-07  Score=53.16  Aligned_cols=70  Identities=23%  Similarity=0.372  Sum_probs=48.4

Q ss_pred             eEEEEeEeCc-cCCCeEEEEeCCEEecccc-eEEEEEE--e---cCCCeEEEEEEEccCCCCC-CeEEEEEeeCCCcc
Q psy11826          5 KITFFCMAEG-FPRPHITWTKDDIELTFHK-YFQVHEW--F---LGNNTIKSKMEIDPATQKD-AGYYECVADNPFAI   74 (83)
Q Consensus         5 ~~~~~C~~~~-~~~~~~~w~~~~~~~~~~~-~~~~~~~--~---~~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~g~   74 (83)
                      .+.+.|.+.+ .|.|.+.|++++..+.... ...+...  .   .+.....++|.|..++++| .+.|+|.+.|....
T Consensus       489 ~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          489 NKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             EEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             eeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence            3456999887 6999999999999886432 2222111  1   1223455789999988555 78999999998643

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.78  E-value=9.5e-08  Score=49.08  Aligned_cols=69  Identities=17%  Similarity=0.361  Sum_probs=45.5

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeCC--EEecc-----------------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKDD--IELTF-----------------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.|.|.+.+.+  .+.+.|++..  ..+..                 ..++.....   .......|.|.+++.+|
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~~v~~~D   90 (257)
T 3bn9_D           14 PGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRD---NSKNTLYLQMSSLRAED   90 (257)
T ss_dssp             TTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEE---TTTTEEEEEEESCCGGG
T ss_pred             CCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEec---CCCCEEEEEECCCChhh
Confidence            689999999988765  5789999742  11100                 011111110   01123579999999999


Q ss_pred             CeEEEEEeeCCCc
Q psy11826         61 AGYYECVADNPFA   73 (83)
Q Consensus        61 ~g~y~C~~~~~~g   73 (83)
                      +|.|.|.+.+..+
T Consensus        91 sG~Y~C~~~~~~g  103 (257)
T 3bn9_D           91 TAVYYCARPYLTY  103 (257)
T ss_dssp             CEEEEEEEECCSS
T ss_pred             CEEEEEEEecCCC
Confidence            9999999988654

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.78  E-value=1.3e-08  Score=52.86  Aligned_cols=66  Identities=15%  Similarity=0.259  Sum_probs=45.0

Q ss_pred             CCceEEEEeEeCccCCC------eEEEEeCC--EEe---cc---------cceEEEEEEecCCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGFPRP------HITWTKDD--IEL---TF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~------~~~w~~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   61 (83)
                      .|+.+.|.|.+.+.+.+      .+.|+++.  ...   ..         ..++....     ......|.|.+++.+|+
T Consensus       173 ~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~-----~~~~~~L~I~~v~~~Ds  247 (291)
T 2gki_A          173 AGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSG-----SGTDFTLTISSVQAEDL  247 (291)
T ss_dssp             TTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGC
T ss_pred             CCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEe-----cCCEEEEEECCCCHHHC
Confidence            58899999999888765      89999852  211   10         11111110     01134799999999999


Q ss_pred             eEEEEEeeCCC
Q psy11826         62 GYYECVADNPF   72 (83)
Q Consensus        62 g~y~C~~~~~~   72 (83)
                      |.|.|.+.+..
T Consensus       248 G~Y~C~a~~~~  258 (291)
T 2gki_A          248 AVYYCKQSYYH  258 (291)
T ss_dssp             EEEEEEEEETT
T ss_pred             EEEEEEEccCC
Confidence            99999998743

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=98.78  E-value=1.4e-08  Score=51.35  Aligned_cols=77  Identities=14%  Similarity=0.331  Sum_probs=48.7

Q ss_pred             CCceEEEEeEeCcc-CCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.+.|.+.+. |.+ .+.|++++..+..... ......+......+.|.|......| |.|.|.+.+..+......
T Consensus       154 ~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~-~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~  231 (239)
T 3tv3_H          154 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTF-PAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK  231 (239)
T ss_dssp             -TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEC-CCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEE
T ss_pred             cCCcEEEEEEEeeEeCCCeEEEEEECCccCceEec-CceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEE
Confidence            47889999998874 444 4789998754321110 0011112223345678898888888 999999999876654443


Q ss_pred             E
Q psy11826         80 R   80 (83)
Q Consensus        80 ~   80 (83)
                      .
T Consensus       232 ~  232 (239)
T 3tv3_H          232 R  232 (239)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=98.77  E-value=3.1e-09  Score=48.11  Aligned_cols=65  Identities=18%  Similarity=0.298  Sum_probs=44.0

Q ss_pred             CCceEEEEeEeC-ccCCCeEEEEeC--CE---Eec-----c----------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAE-GFPRPHITWTKD--DI---ELT-----F----------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~-~~~~~~~~w~~~--~~---~~~-----~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      +|+.+.|.|... +.+.+.+.|++.  +.   .+.     .          ..++....     ......|.|.+++.+|
T Consensus        13 ~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~-----~~~~~~L~I~~~~~~D   87 (111)
T 2qhl_A           13 RGENVTMECSMSKVKDKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTV-----NDQKFDLNIIGTREDD   87 (111)
T ss_dssp             TTCCEEECCBCTTCSCGGGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEE-----SSSBEEEEESSCCGGG
T ss_pred             CCCCEEEEEEccCCcccceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEE-----cCCeEEEEECCCChhH
Confidence            689999999987 767778999873  21   111     0          01111110     1123579999999999


Q ss_pred             CeEEEEEeeCC
Q psy11826         61 AGYYECVADNP   71 (83)
Q Consensus        61 ~g~y~C~~~~~   71 (83)
                      +|.|.|.+.+.
T Consensus        88 sG~Y~C~~~~~   98 (111)
T 2qhl_A           88 GGEYFCGEVEG   98 (111)
T ss_dssp             CEEEEEEEEET
T ss_pred             CEEEEEEEccC
Confidence            99999999764

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.77  E-value=1.4e-08  Score=50.60  Aligned_cols=72  Identities=21%  Similarity=0.429  Sum_probs=43.9

Q ss_pred             CCceEEEEeEeCcc-CCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeE
Q psy11826          2 LGRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG   78 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~   78 (83)
                      .|+.+.|.|.+.+. |.| .+.|++++..+........ . ........+.|.  .....+ |.|.|.+.|..+.....
T Consensus       136 ~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~-~-~~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~~~~  209 (215)
T 1c5d_H          136 TSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAV-L-QSGLYTLTSSVT--SSTWPS-QTVTCNVAHPASSTKVD  209 (215)
T ss_dssp             CCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSCCBCCCE-E-ETTEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTEEEE
T ss_pred             cCCcEEEEEEEeeeEcCCcEEEEccCCccCceEecCcc-c-CCCCEEEEEEEe--cccCCC-CeEEEEEEeCCCCccEE
Confidence            47889999999886 777 8999998764332110000 0 011111223344  444455 99999999988875443

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.77  E-value=1.3e-08  Score=49.65  Aligned_cols=70  Identities=14%  Similarity=0.177  Sum_probs=43.1

Q ss_pred             CCceEEEEeEeCc-cCCCeEEEEeC-CEEecc---cceEEEEEEec--CCC---eEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEG-FPRPHITWTKD-DIELTF---HKYFQVHEWFL--GNN---TIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~~~~w~~~-~~~~~~---~~~~~~~~~~~--~~~---~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      +|+.+.|.|...+ .+.+.+.|++. +..+..   ........ ..  ...   ....+|.|.+++.+|+|.|.|.+.+.
T Consensus        13 ~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~-~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C~v~~~   91 (180)
T 2dru_A           13 TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFE-SVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHE   91 (180)
T ss_dssp             TTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECS-STTTTTEEECTTTCCEEECSCCGGGCEEEEEEEESS
T ss_pred             eCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcc-hhcCCeEEEeCCCccEEEcCCCHHHCeEEEEEEEcC
Confidence            6899999998744 34678999984 322211   00000000 00  000   01236999999999999999998776


Q ss_pred             C
Q psy11826         72 F   72 (83)
Q Consensus        72 ~   72 (83)
                      .
T Consensus        92 ~   92 (180)
T 2dru_A           92 T   92 (180)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I, secreted, immune system; 2.10A {Ctenopharyngodon idella} SCOP: b.1.1.0

Probab=98.77  E-value=9.7e-08  Score=42.44  Aligned_cols=68  Identities=15%  Similarity=0.205  Sum_probs=41.6

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      |+.+.+.|.+.|+.++  .+.|.++|..+............+......+.|.+   ..++.+.|.|.+.+..-
T Consensus        18 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~ytC~V~H~~l   87 (97)
T 3gbl_A           18 GKENTLICYVSGFHPPDISIELLKNGEVIADAQQTDLAFEKGWQFHLTKSVSF---KPEKSDEYSCSVRHMSK   87 (97)
T ss_dssp             TCCEEEEEEEECCBSSCEEEEEEETTEECTTCEECCCEEETTTEEEEEEEEEE---CCCTTCCEEEEEEETTE
T ss_pred             CCcEEEEEEEcceeCCccEEEEEECCccCccccccccEeCCCCcEEEEEEEEE---eCCCCCEEEEEEEeCCC
Confidence            5678999999987444  68999999887532111111211112223344554   44567889999987543

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.77  E-value=3e-08  Score=51.54  Aligned_cols=68  Identities=19%  Similarity=0.354  Sum_probs=44.7

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeCC--EEecc-----------------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKDD--IELTF-----------------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      +|+.+.|.|.+.+.+  .+.+.|++..  .....                 ..++.....   ......+|.|.+++.+|
T Consensus        36 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~~v~~~D  112 (291)
T 2gki_A           36 PGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSD---KSSSTAYMELSSLTSED  112 (291)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEE---GGGTEEEEEECSCCGGG
T ss_pred             CCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEe---CCCCEEEEEECcCCHHH
Confidence            689999999987766  5789999842  11100                 011111100   01113579999999999


Q ss_pred             CeEEEEEeeCCC
Q psy11826         61 AGYYECVADNPF   72 (83)
Q Consensus        61 ~g~y~C~~~~~~   72 (83)
                      +|.|.|.+.+..
T Consensus       113 sG~Y~C~~~~~~  124 (291)
T 2gki_A          113 SAVYYCARGAYK  124 (291)
T ss_dssp             CEEEEEEEECGG
T ss_pred             CEEEEEEEeccc
Confidence            999999998864

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=98.76  E-value=1.8e-08  Score=51.31  Aligned_cols=71  Identities=15%  Similarity=0.276  Sum_probs=47.0

Q ss_pred             CceEEEEeEeCcc-CCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      |+.+.|.|.+.+. |.+ .+.|++++..+............+......+.|.+......+.+.|.|.+.+..-
T Consensus       145 g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          145 KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  217 (240)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence            6789999999884 543 6999999987653221111111122334456778777666678999999998653

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.76  E-value=5.6e-08  Score=49.88  Aligned_cols=67  Identities=15%  Similarity=0.297  Sum_probs=45.8

Q ss_pred             CCceEEEEeEeCccC------CCeEEEEeC--CEEe---cc---------cceEEEEEEecCCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGFP------RPHITWTKD--DIEL---TF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~------~~~~~w~~~--~~~~---~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   61 (83)
                      +|+.+.|.|.+.+.+      .+.+.|++.  +..+   ..         ..++....     ......|.|.+++.+|+
T Consensus        19 ~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~-----~~~~~~L~I~~v~~~Ds   93 (264)
T 2gjj_A           19 VGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSG-----SGTDFTLTIGSVKAEDL   93 (264)
T ss_dssp             TTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGGC
T ss_pred             CCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEec-----CCCEEEEEECCCCHHHC
Confidence            589999999998877      678999974  2211   10         11222111     01134799999999999


Q ss_pred             eEEEEEeeCCCc
Q psy11826         62 GYYECVADNPFA   73 (83)
Q Consensus        62 g~y~C~~~~~~g   73 (83)
                      |.|.|.+.+..+
T Consensus        94 G~Y~C~~~~~~~  105 (264)
T 2gjj_A           94 AVYYCQQYSNYP  105 (264)
T ss_dssp             EEEEEEECSSSS
T ss_pred             EEEEEEEecCCc
Confidence            999999988643

>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A

Probab=98.76  E-value=1.6e-07  Score=42.64  Aligned_cols=67  Identities=16%  Similarity=0.230  Sum_probs=42.6

Q ss_pred             CCceEEEEeEeCcc---CCCeEEEEeCC--E---Eecc-------------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGF---PRPHITWTKDD--I---ELTF-------------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~---~~~~~~w~~~~--~---~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      +|+.+.|.|.....   +...+.|++..  .   .+..             ..++....   .......+|.|.+++.+|
T Consensus        12 ~G~~v~L~C~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~sL~I~~~~~~D   88 (116)
T 3bj9_1           12 LGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSK---DVARNRGYLSISELQPED   88 (116)
T ss_dssp             TTCCEEEEEEECSSSCGGGCCEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEE---EGGGTEEEEEECSCCGGG
T ss_pred             CCCcEEEEEEeecCccCCCceEEEEEeCCCCCcEEEEEEecCCCceeCccCCCcEEEEe---cCCCceEEEEECCCChhH
Confidence            58999999998643   45679998732  1   1110             00111110   011123479999999999


Q ss_pred             CeEEEEEeeCC
Q psy11826         61 AGYYECVADNP   71 (83)
Q Consensus        61 ~g~y~C~~~~~   71 (83)
                      +|.|.|.+.+.
T Consensus        89 sG~Y~C~~~~~   99 (116)
T 3bj9_1           89 EAMYYCAMGAR   99 (116)
T ss_dssp             CEEEEEEECCS
T ss_pred             CEEEEEEEeCC
Confidence            99999999865

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.75  E-value=9.6e-09  Score=50.80  Aligned_cols=68  Identities=16%  Similarity=0.160  Sum_probs=44.7

Q ss_pred             CCceEEEEeEeCcc-------CCCeEEEEeCCEEec----c-------------cceEEEEEEecCCCeEEEEEEEccCC
Q psy11826          2 LGRKITFFCMAEGF-------PRPHITWTKDDIELT----F-------------HKYFQVHEWFLGNNTIKSKMEIDPAT   57 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-------~~~~~~w~~~~~~~~----~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~   57 (83)
                      .|+.+.|.|.+.+.       +.+.+.|++++....    .             ..+.....   .......+|.|.+++
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~I~~v~   90 (214)
T 2zg1_A           14 EGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLG---DVQKKNCSLSIGDAR   90 (214)
T ss_dssp             TTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECS---CGGGTBCCEEECSCC
T ss_pred             cCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEec---cCCCCeEEEEEccCC
Confidence            58999999997643       567899999764210    0             01111100   001113369999999


Q ss_pred             CCCCeEEEEEeeCCC
Q psy11826         58 QKDAGYYECVADNPF   72 (83)
Q Consensus        58 ~~~~g~y~C~~~~~~   72 (83)
                      .+|.|.|.|.+.+..
T Consensus        91 ~~D~G~Y~C~~~~~~  105 (214)
T 2zg1_A           91 MEDTGSYFFRVERGR  105 (214)
T ss_dssp             GGGCEEEEEEEEETT
T ss_pred             HhhCceEEEEEEcCC
Confidence            999999999998765

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=98.74  E-value=4.1e-07  Score=43.07  Aligned_cols=65  Identities=17%  Similarity=0.277  Sum_probs=44.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CE---Eecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DI---ELTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~---~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.++|.|.....+...+.|++.  +.   .+..         ..++....     ......|.|.+++.+|+|.|.|.
T Consensus        14 ~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~-----~~~~~sL~I~~l~~~DsG~Y~C~   88 (143)
T 3u6r_L           14 PGERATLSCRASQSVNKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSG-----SGTDFTLTISNLEPEDFAVYYCQ   88 (143)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEECCCCceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEc-----cCCEEEEEEccCcccCCEEEEEE
Confidence            689999999988766778999973  21   1110         11222110     11245799999999999999999


Q ss_pred             eeCC
Q psy11826         68 ADNP   71 (83)
Q Consensus        68 ~~~~   71 (83)
                      +.+.
T Consensus        89 ~~~~   92 (143)
T 3u6r_L           89 QRSD   92 (143)
T ss_dssp             ECSS
T ss_pred             EecC
Confidence            8764

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.74  E-value=2e-08  Score=51.14  Aligned_cols=70  Identities=14%  Similarity=0.286  Sum_probs=46.3

Q ss_pred             CceEEEEeEeCc-cCCC-eEEEEeCCEEecccceEEEEEE------ecCCCeEEEEEEEccCCCCC-CeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEG-FPRP-HITWTKDDIELTFHKYFQVHEW------FLGNNTIKSKMEIDPATQKD-AGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~   72 (83)
                      |+.+.|.|.+.+ .|.+ .+.|+++|..+...........      .+......+.|.+......| .+.|.|.+.+..
T Consensus       139 g~~~~L~C~~~g~~P~~i~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          139 TQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             HSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             CCceEEEEEEceEECCcEEEEEEECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            478899999988 5666 7899999988765321110000      01222334578888877777 779999998754

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.74  E-value=1.7e-07  Score=47.74  Aligned_cols=70  Identities=13%  Similarity=0.284  Sum_probs=42.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CEEe--c----ccceEEEE-----EEecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DIEL--T----FHKYFQVH-----EWFLGNNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~~~--~----~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      .|+.+.|.|...+.+.+.+.|++.  +...  .    ........     ........... |.|.+++.+|+|.|.|.+
T Consensus        15 ~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~~DsG~Y~C~~   93 (253)
T 3to4_D           15 RGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANMSQGRTLYCTS   93 (253)
T ss_dssp             SSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESCSSCEEEEEEE
T ss_pred             CCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCChhhCeEEEEEE
Confidence            589999999988888889999872  2111  0    00000000     00000000011 999999999999999999


Q ss_pred             eCCC
Q psy11826         69 DNPF   72 (83)
Q Consensus        69 ~~~~   72 (83)
                      .+..
T Consensus        94 ~~~~   97 (253)
T 3to4_D           94 SADH   97 (253)
T ss_dssp             ECSC
T ss_pred             ecCC
Confidence            7653

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.74  E-value=3.6e-08  Score=49.16  Aligned_cols=67  Identities=16%  Similarity=0.405  Sum_probs=43.6

Q ss_pred             CCceEEEEeEeCcc--CCCeEEEEeCC--EEec------c-------------cceEEEEEEecCCCeEEEEEEEccCCC
Q psy11826          2 LGRKITFFCMAEGF--PRPHITWTKDD--IELT------F-------------HKYFQVHEWFLGNNTIKSKMEIDPATQ   58 (83)
Q Consensus         2 ~g~~~~~~C~~~~~--~~~~~~w~~~~--~~~~------~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~~   58 (83)
                      .|+.+.|.|.+.+.  +.+.+.|++..  ....      .             ..++.....   ......+|.|.+++.
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~~v~~   90 (221)
T 3m8o_H           14 PGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRD---DSKNTAFLQMNSLKS   90 (221)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEE---GGGTEEEEEECSCCG
T ss_pred             CCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEec---CCCCEEEEEECCCCH
Confidence            68999999998764  36789998632  1110      0             011221110   111244799999999


Q ss_pred             CCCeEEEEEeeCC
Q psy11826         59 KDAGYYECVADNP   71 (83)
Q Consensus        59 ~~~g~y~C~~~~~   71 (83)
                      +|+|.|.|.+.+.
T Consensus        91 ~DsG~Y~C~~~~~  103 (221)
T 3m8o_H           91 DDTAMYYCVIRGD  103 (221)
T ss_dssp             GGCEEEEEEEESC
T ss_pred             HHCEEEEEEEECC
Confidence            9999999999875

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.74  E-value=2.7e-08  Score=51.46  Aligned_cols=67  Identities=15%  Similarity=0.362  Sum_probs=44.1

Q ss_pred             CCceEEEEeEeCcc--CCCeEEEEeCC--EEecc-----------------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGF--PRPHITWTKDD--IELTF-----------------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~--~~~~~~w~~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.|.|.+.+.  +.+.+.|++..  .....                 ..++.+..   .......+|.|.+++.+|
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~sL~I~~v~~~D   90 (280)
T 3fku_X           14 PGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITA---DQSTRTAYMDLRSLRSED   90 (280)
T ss_dssp             TTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEE---ETTTTEEEEEECSCCSTT
T ss_pred             CCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEE---eCCCCEEEEEECCCChhh
Confidence            68999999998775  56789998732  11110                 01111110   011123579999999999


Q ss_pred             CeEEEEEeeCC
Q psy11826         61 AGYYECVADNP   71 (83)
Q Consensus        61 ~g~y~C~~~~~   71 (83)
                      +|.|.|.+.+.
T Consensus        91 sG~Y~C~~~~~  101 (280)
T 3fku_X           91 TAVYYCARSPS  101 (280)
T ss_dssp             CEECCEEECSS
T ss_pred             CEEEEEEEecC
Confidence            99999999886

>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...

Probab=98.74  E-value=2.2e-07  Score=42.31  Aligned_cols=67  Identities=13%  Similarity=0.326  Sum_probs=43.3

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEeCC--E---Eec---c----------cceEEEEEEecCCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTKDD--I---ELT---F----------HKYFQVHEWFLGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~~~--~---~~~---~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   61 (83)
                      +|+.++|.|...+.+  ...+.|++..  .   .+.   .          ..++.....   .......|.|.+++.+|+
T Consensus        14 ~G~~vtL~C~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~L~I~~~~~~Ds   90 (116)
T 1a2y_B           14 PSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKD---NSKSQVFLKMNSLHTDDT   90 (116)
T ss_dssp             TTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEE---GGGTEEEEEECSCCGGGC
T ss_pred             CCCcEEEEEEEcCCCcCCcEEEEEEeCCCCCcEEEEEEecCCCeeeCcccCCcEEEEEE---CCCCEEEEEECCCCHHHC
Confidence            689999999986543  4689998732  1   110   0          011221111   112245799999999999


Q ss_pred             eEEEEEeeCC
Q psy11826         62 GYYECVADNP   71 (83)
Q Consensus        62 g~y~C~~~~~   71 (83)
                      |.|.|.+.+.
T Consensus        91 g~Y~C~~~~~  100 (116)
T 1a2y_B           91 ARYYCARERD  100 (116)
T ss_dssp             EEEEEEEESS
T ss_pred             EEEEEEEecC
Confidence            9999999865

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.74  E-value=1e-08  Score=52.87  Aligned_cols=72  Identities=15%  Similarity=0.268  Sum_probs=46.6

Q ss_pred             CceEEEEeEeCcc-CC-CeEEEEeCCEEecccceEEE--EE----EecCCCeEEEEEEEccCCCCC-CeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGF-PR-PHITWTKDDIELTFHKYFQV--HE----WFLGNNTIKSKMEIDPATQKD-AGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~-~~-~~~~w~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~g   73 (83)
                      |+.+.+.|.+.+. |. +.+.|++++..+........  ..    ..+......+.|.|......| .+.|+|.+.|...
T Consensus       165 g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~  244 (279)
T 2wbj_D          165 TQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL  244 (279)
T ss_dssp             HSCCEEEEEEEEEBSSCEEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCB
T ss_pred             CCceEEEEEEeeEcCCCcEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCC
Confidence            6778999999886 43 68999999987764321100  00    001122344568887777665 6789999998654


Q ss_pred             c
Q psy11826         74 I   74 (83)
Q Consensus        74 ~   74 (83)
                      .
T Consensus       245 ~  245 (279)
T 2wbj_D          245 S  245 (279)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=98.73  E-value=2.7e-08  Score=45.03  Aligned_cols=65  Identities=14%  Similarity=0.217  Sum_probs=42.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--E---Eecc---c------ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--I---ELTF---H------KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~---~~~~---~------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|...+.+.+.+.|++..  .   .+..   .      .++...   .........|.|.+++.+|+|.|.|.
T Consensus        14 ~G~~v~L~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~---~~~~~~~~~L~I~~~~~~DsG~Y~C~   90 (112)
T 2z35_A           14 EEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEAT---YNKEATSFHLQKASVQESDSAVYYCA   90 (112)
T ss_dssp             TTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEE---CBTTTTBCCEEESSCCSTTCSEEEEE
T ss_pred             CCCCEEEEEEECCCCCCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEE---EcCCCCEEEEEECCCChhhCEEEEEE
Confidence            5899999999877677789999732  1   1110   0      111110   01111234699999999999999999


Q ss_pred             ee
Q psy11826         68 AD   69 (83)
Q Consensus        68 ~~   69 (83)
                      +.
T Consensus        91 ~~   92 (112)
T 2z35_A           91 LS   92 (112)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=98.73  E-value=1.6e-07  Score=43.03  Aligned_cols=65  Identities=20%  Similarity=0.228  Sum_probs=43.4

Q ss_pred             CCceEEEEeEeCccC---CCeEEEEeC--CEE---ecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEE
Q psy11826          2 LGRKITFFCMAEGFP---RPHITWTKD--DIE---LTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY   64 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~---~~~~~w~~~--~~~---~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y   64 (83)
                      +|+.+.|.|...+.+   .+.+.|++.  +..   +..         ..++....     ......|.|.+++.+|+|.|
T Consensus        14 ~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~-----~~~~~~L~I~~~~~~DsG~Y   88 (120)
T 1oaq_L           14 PGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL-----IGNKAALTITGAQTEDEAIY   88 (120)
T ss_dssp             TTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEEESCCGGGCEEE
T ss_pred             CCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEec-----CCCeEEEEECCCChhhCeEE
Confidence            689999999987765   567999873  211   110         11222111     01135799999999999999


Q ss_pred             EEEeeCC
Q psy11826         65 ECVADNP   71 (83)
Q Consensus        65 ~C~~~~~   71 (83)
                      .|.+.+.
T Consensus        89 ~C~~~~~   95 (120)
T 1oaq_L           89 FCALWYS   95 (120)
T ss_dssp             EEEEEET
T ss_pred             EEEEccC
Confidence            9998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	83
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	9e-14
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	8e-12
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	4e-11
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	7e-11
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-10
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	1e-10
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-10
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	2e-09
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	4e-09
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	5e-09
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	1e-08
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-08
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-08
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	4e-08
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	7e-08
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	8e-08
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	1e-07
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	1e-07
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-07
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-07
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	2e-07
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	6e-07
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	8e-07
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	1e-06
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	4e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	4e-06
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-05
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	2e-05
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	3e-05
d1ow0a1	101	b.1.1.2 (A:242-342) Immunoglobulin heavy chain alp	5e-05
d1o0va1	104	b.1.1.2 (A:228-330) Immunoglobulin heavy chain eps	6e-05
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	1e-04
d1vcaa1	109	b.1.1.3 (A:91-199) Vascular cell adhesion molecule	1e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-04
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-04
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-04
d1igtb4	102	b.1.1.2 (B:363-474) Immunoglobulin heavy chain gam	2e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	3e-04
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	4e-04
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	6e-04
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	8e-04
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	8e-04
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	0.001
d1k5nb_	100	b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapi	0.001
d1rzfl2	102	b.1.1.2 (L:109-210) Immunoglobulin light chain lam	0.001
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	0.002
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	0.002
d1uvqa1	99	b.1.1.2 (A:85-183) Class II MHC alpha chain, C-ter	0.002
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	0.003
d1t7va1	94	b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG	0.004
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	0.004

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 9e-14
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
             + F C A G P P + W K+  E         ++    + ++  +         D G
Sbjct: 20 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME----SVVPSDKG 75

Query: 63 YYECVADNPF 72
           Y CV +N +
Sbjct: 76 NYTCVVENEY 85

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 53.6 bits (128), Expect = 8e-12
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G+ +T  C   G P P++ W+ +   L+  +   V +  L          I      D G
Sbjct: 18 GQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRA-TVTDSGL---------VIKGVKNGDKG 67

Query: 63 YYECVADNPF 72
          YY C A N  
Sbjct: 68 YYGCRATNEH 77

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 4e-11
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G+ +   C  EG   P I W KD   +       +             + +    + DAG
Sbjct: 11 GQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI---GFLSLKSVERSDAG 67

Query: 63 YYECVADNPF 72
           Y C  ++  
Sbjct: 68 RYWCQVEDGG 77

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 7e-11
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G  +  F    G      TW K   ++   ++ +V     G+     K+ I  A Q+  G
Sbjct: 15 GESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGS-----KLTILAARQEHCG 69

Query: 63 YYECVADNPFAIDR 76
           Y  + +N     +
Sbjct: 70 CYTLLVENKLGSRQ 83

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.6 bits (120), Expect = 1e-10
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 2  LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
          LG+ +T  C A+GFP P ++WTKD   +   +       F  +++    + I    + D 
Sbjct: 19 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSE---LTIRNVDKNDE 75

Query: 62 GYYECVADNPF 72
            Y C+A+N  
Sbjct: 76 AEYVCIAENKA 86

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.8 bits (120), Expect = 1e-10
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 1  MLGRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK---SKMEIDPA 56
           +G +    C   +G P    +W KD I +      +   +   + TI      +  DP 
Sbjct: 15 TIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV 74

Query: 57 TQKDAGYYECVADNPFAIDRR 77
          T  D+G Y C A N +    R
Sbjct: 75 TAFDSGEYYCQAQNGYGTAMR 95

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 1e-10
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 8/80 (10%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIEL--------TFHKYFQVHEWFLGNNTIKSKME 52
          ++G  + F C      +PHI W K   +           +            +     + 
Sbjct: 18 VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLY 77

Query: 53 IDPATQKDAGYYECVADNPF 72
          I   T +DAG Y C+A N  
Sbjct: 78 IRNVTFEDAGEYTCLAGNSI 97

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-09
 Identities = 14/75 (18%), Positives = 26/75 (34%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
                    +G P+P + W  +   L   KY         +      +++D  T  + G
Sbjct: 16 DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNG 75

Query: 63 YYECVADNPFAIDRR 77
           Y  +A N +  D +
Sbjct: 76 DYTLIAKNEYGKDEK 90

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (111), Expect = 4e-09
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 2/77 (2%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELT--FHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
                    +G P P + W  +   L      + +  E           + ++  T  +
Sbjct: 15 MHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVN 74

Query: 61 AGYYECVADNPFAIDRR 77
           G Y  +A NPF     
Sbjct: 75 NGNYTLLAANPFGQASA 91

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 5e-09
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 3  GRKITFFCMAEGFP-RPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
          G      C  +    RPH+TW K +         +   W    N     +  +P    D 
Sbjct: 18 GDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDN 77

Query: 62 GYYECVADNP 71
          G Y C A+  
Sbjct: 78 GSYRCSANFQ 87

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 1e-08
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

Query: 1  MLGRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLG--NNTIKSKMEIDPAT 57
           +G +    C   +G P    TW KD I +  +              N    ++  DP +
Sbjct: 15 TIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLS 74

Query: 58 QKDAGYYECVADNPFAIDRR 77
            D G Y C A N +     
Sbjct: 75 ASDTGEYSCEARNGYGTPMT 94

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 2e-08
 Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 5/70 (7%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G    F C  +G P P +TW +    L+     QV          KS  EI      D G
Sbjct: 14 GESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK-----YKSTFEISSVQASDEG 68

Query: 63 YYECVADNPF 72
           Y  V +N  
Sbjct: 69 NYSVVVENSE 78

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.8 bits (105), Expect = 2e-08
 Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 11/77 (14%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
          + G+ +T  C A G P P I W                       + +  + I     +D
Sbjct: 18 LTGQMVTLECFAFGNPVPQIKW-----------RKLDGSQTSKWLSSEPLLHIQNVDFED 66

Query: 61 AGYYECVADNPFAIDRR 77
           G YEC A+N    D  
Sbjct: 67 EGTYECEAENIKGRDTY 83

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 4e-08
 Identities = 12/70 (17%), Positives = 21/70 (30%), Gaps = 4/70 (5%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G    F     G P P   W K+ +++        +           ++ I   T +D+ 
Sbjct: 19 GSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYW----PEDNVCELVIRDVTGEDSA 74

Query: 63 YYECVADNPF 72
               A N  
Sbjct: 75 SIMVKAINIA 84

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.3 bits (101), Expect = 7e-08
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 2  LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
          +G  + + C+A G PRP + W +D   L      +V    L                +D+
Sbjct: 15 IGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGEL---------RFSKLVLEDS 65

Query: 62 GYYECVADNPF 72
          G Y+CVA+N  
Sbjct: 66 GMYQCVAENKH 76

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.4 bits (101), Expect = 8e-08
 Identities = 11/69 (15%), Positives = 18/69 (26%), Gaps = 6/69 (8%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G      C       P I W     ++   K  +            + ++I    + D G
Sbjct: 16 GEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS------NNYLQIRGIKKTDEG 69

Query: 63 YYECVADNP 71
           Y C     
Sbjct: 70 TYRCEGRIL 78

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 43.3 bits (101), Expect = 1e-07
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G    F C  EG+P P + W KDD  +   ++FQ+     GN      + I      D  
Sbjct: 23 GSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN----CSLTISEVCGDDDA 78

Query: 63 YYECVADNPF 72
           Y C A N  
Sbjct: 79 KYTCKAVNSL 88

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 43.4 bits (101), Expect = 1e-07
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G     +CM    P  +  + K+  ++  +   ++      +     ++       +D G
Sbjct: 18 GDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG---KRLLFKTTLPEDEG 74

Query: 63 YYECVADNPF 72
           Y C  DN  
Sbjct: 75 VYTCEVDNGV 84

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.3 bits (101), Expect = 1e-07
 Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G+   F+C       P +TW KDD EL     +               + I+     D G
Sbjct: 16 GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNG-----NDYGLTINRVKGDDKG 70

Query: 63 YYECVADNPF 72
           Y   A N +
Sbjct: 71 EYTVRAKNSY 80

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 1e-07
 Identities = 15/102 (14%), Positives = 26/102 (25%), Gaps = 24/102 (23%)

Query: 3   GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHE----------------------- 39
           G K+       G P P + W K   +          +                       
Sbjct: 24  GNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEG 83

Query: 40  -WFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR 80
              +     +S   ++ A ++D G Y     NP   D+    
Sbjct: 84  RVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLT 125

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 2e-07
 Identities = 6/73 (8%), Positives = 17/73 (23%), Gaps = 6/73 (8%)

Query: 3  GRKITFFCMAEG---FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
          G+  T  C            +   + +  L +  + +            +        + 
Sbjct: 17 GKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPA---PQEATATFNSTADRED 73

Query: 60 DAGYYECVADNPF 72
              + C+A    
Sbjct: 74 GHRNFSCLAVLDL 86

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.0 bits (95), Expect = 6e-07
 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
            K+T  C A   P     W  +  EL      +              +  +P   KDAG
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVA------GDLVISNPVKAKDAG 75

Query: 63 YYECVADNPF 72
           Y+CVA N  
Sbjct: 76 SYQCVATNAR 85

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 8e-07
 Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 2/70 (2%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G+  TF C A G            I                +    +   +   T++DAG
Sbjct: 16 GQFATFQCSAIGRTVAGDRLWLQGI--DVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAG 73

Query: 63 YYECVADNPF 72
           Y C+     
Sbjct: 74 KYRCMIRTEG 83

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 1e-06
 Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 2   LGRKITFFCMAEGFPRPHITWTK-------DDIELTFHKYFQVHEWFLGNNTIKSKMEID 54
           LG +I   C   G       W         DD  L    Y   +      +T+ + + I 
Sbjct: 16  LGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNIS 75

Query: 55  PATQKDAG-YYECVADNPFAIDRRGFR 80
               +     + C A N   ID    +
Sbjct: 76  EIESRFYKHPFTCFAKNTHGIDAAYIQ 102

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 4e-06
 Identities = 9/69 (13%), Positives = 15/69 (21%), Gaps = 9/69 (13%)

Query: 3  GRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
          G  +T  C          + W         H                 ++ +      D+
Sbjct: 21 GDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG--------RRLLLRSVQLHDS 72

Query: 62 GYYECVADN 70
          G Y C    
Sbjct: 73 GNYSCYRAG 81

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 4e-06
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 4/70 (5%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
            G ++   C        ++ W K+  E+      +      G   I   + I+ AT+ D
Sbjct: 13 YCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI---LIIEGATKAD 68

Query: 61 AGYYECVADN 70
          A  Y  +   
Sbjct: 69 AAEYSVMTTG 78

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 1e-05
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 11/76 (14%)

Query: 3  GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
          G  +TF C A+   P   + WT+        +    +            + I      DA
Sbjct: 17 GADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN----------GILTIRNVQPSDA 66

Query: 62 GYYECVADNPFAIDRR 77
          G Y C   N FA+D+ 
Sbjct: 67 GTYVCTGSNMFAMDQG 82

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 2e-05
 Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 7/71 (9%)

Query: 3  GRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
          G+++T  C  EG  PR  +T              ++          +    +        
Sbjct: 19 GKQLTLRCQVEGGAPRAQLTVV------LLRGEKELKREPAVGEPAEVTTTVLVRRDHHG 72

Query: 62 GYYECVADNPF 72
            + C  +   
Sbjct: 73 AQFSCRTELDL 83

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 2e-05
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 1/74 (1%)

Query: 7  TFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC 66
              +  G P P + W  +   L   K   V  +  G  + +  +  +  T  + G Y  
Sbjct: 21 CIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS-EGCLLFNKPTHYNNGNYTL 79

Query: 67 VADNPFAIDRRGFR 80
          +A NP     +   
Sbjct: 80 IAKNPLGTANQTIN 93

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 3e-05
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 6/75 (8%)

Query: 1  MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIK-----SKMEIDP 55
          ++   +TF       P   + W K   ++   +  +   +    N +        + I  
Sbjct: 8  VVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYN 66

Query: 56 ATQKDAGYYECVADN 70
           T  D   YE  + N
Sbjct: 67 LTSSDEDEYEMESPN 81

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (83), Expect = 5e-05
 Identities = 12/74 (16%), Positives = 20/74 (27%), Gaps = 5/74 (6%)

Query: 1  MLGRKITFFCMAEGFPRP---HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPAT 57
          +LG +    C   G         TWT    +       +      G  ++ S +      
Sbjct: 16 LLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDL--CGCYSVSSVLPGCAEP 73

Query: 58 QKDAGYYECVADNP 71
                + C A  P
Sbjct: 74 WNHGKTFTCTAAYP 87

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (83), Expect = 6e-05
 Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 2/71 (2%)

Query: 3  GRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
             I   C+  G+ P    ITW +D   +                + +S++ +       
Sbjct: 21 PPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLS 80

Query: 61 AGYYECVADNP 71
             Y C     
Sbjct: 81 DRTYTCQVTYQ 91

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 1e-04
 Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 3/73 (4%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQV--HEWFLGNNTIKSKMEIDPATQKD 60
          G      C +E  P           +             +F+ ++  +S++ I+    + 
Sbjct: 17 GETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA 76

Query: 61 -AGYYECVADNPF 72
            G Y C   +  
Sbjct: 77 DPGQYRCNGTSSK 89

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 1e-04
 Identities = 11/71 (15%), Positives = 18/71 (25%), Gaps = 2/71 (2%)

Query: 3  GRKITFFCMAEG-FPRPHITWT-KDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKD 60
          G+ IT  C     +P   +         L   + F          T   ++   P  +  
Sbjct: 16 GKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDI 75

Query: 61 AGYYECVADNP 71
               C A   
Sbjct: 76 GKVLVCRAKLH 86

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 1e-04
 Identities = 15/85 (17%), Positives = 20/85 (23%), Gaps = 7/85 (8%)

Query: 3   GRKITFFCMAEGFP---RPHITWTKDDIELTF----HKYFQVHEWFLGNNTIKSKMEIDP 55
           G  ITF     G      P + W K                   +   +     ++ I  
Sbjct: 19  GGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITD 78

Query: 56  ATQKDAGYYECVADNPFAIDRRGFR 80
           A     G Y C        D   F 
Sbjct: 79  AQPAFTGGYRCEVSTKDKFDCSNFN 103

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 1e-04
 Identities = 13/68 (19%), Positives = 20/68 (29%), Gaps = 5/68 (7%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G KI             + W K+  E+       + E      T    + I   +  D  
Sbjct: 21 GHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRT----LTISQCSLADDA 75

Query: 63 YYECVADN 70
           Y+CV   
Sbjct: 76 AYQCVVGG 83

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.0 bits (79), Expect = 2e-04
 Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 5/70 (7%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
                 C+ EG  +      K        K +   E        +  +        D G
Sbjct: 17 NNPTVLECIIEGNDQGVKYSWKK-----DGKSYNWQEHNAALRKDEGSLVFLRPQASDEG 71

Query: 63 YYECVADNPF 72
          +Y+C A+ P 
Sbjct: 72 HYQCFAETPA 81

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

 Score = 34.6 bits (79), Expect = 2e-04
 Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 1  MLGRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
          M  +++T  CM   F P   ++ WT +      +K  +      G+  + SK+ ++    
Sbjct: 17 MTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNW 76

Query: 59 KDAGYYECVA 68
           +   Y C  
Sbjct: 77 VERNSYSCSV 86

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.3 bits (77), Expect = 3e-04
 Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 3/73 (4%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTI---KSKMEIDPATQK 59
             I   C   GF  P + W       T    +         + +    S +     T+K
Sbjct: 16 NESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRK 75

Query: 60 DAGYYECVADNPF 72
          D G Y C+     
Sbjct: 76 DNGEYTCMVSEEG 88

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 4e-04
 Identities = 15/82 (18%), Positives = 21/82 (25%), Gaps = 3/82 (3%)

Query: 2   LGRKITFFCMAEGFPRPHITWT-KDDIELTFHKYFQVHEWFLG-NNTIKSKMEIDPATQK 59
            G K    C     P P        +  L      +     +     + S + I    + 
Sbjct: 20  HGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRA 79

Query: 60  -DAGYYECVADNPFAIDRRGFR 80
                Y C A N F  D    R
Sbjct: 80  DFQTIYNCTAWNSFGSDTEIIR 101

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (74), Expect = 6e-04
 Identities = 13/75 (17%), Positives = 16/75 (21%), Gaps = 18/75 (24%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
            + T  C A G P P +   KD                                    G
Sbjct: 19 NSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRD------------------LEG 60

Query: 63 YYECVADNPFAIDRR 77
           Y C A +      R
Sbjct: 61 TYLCRARSTQGEVTR 75

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (75), Expect = 8e-04
 Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 7/85 (8%)

Query: 3  GRKITFFCMAEGFP---RPHITWTKDDIELTFHKYFQVHEWF----LGNNTIKSKMEIDP 55
          G  ITF    +      +P I W K        K  +  +        +     +M+I  
Sbjct: 15 GEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIK 74

Query: 56 ATQKDAGYYECVADNPFAIDRRGFR 80
          A    AG Y C        D   F 
Sbjct: 75 AKDNFAGNYRCEVTYKDKFDSCSFD 99

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 33.0 bits (74), Expect = 8e-04
 Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 5/78 (6%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G          G P P  TWT               E  +   +  + +    A + D+G
Sbjct: 17 GFTHNLEVDFIGAPDPTATWTVG-----DSGAALAPELLVDAKSSTTSIFFPSAKRADSG 71

Query: 63 YYECVADNPFAIDRRGFR 80
           Y+    N    D   F 
Sbjct: 72 NYKLKVKNELGEDEAIFE 89

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.8 bits (73), Expect = 0.001
 Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 3/73 (4%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKS---KMEIDPATQK 59
             +   C   GF  P + W  D  + T    +         + +      +     T++
Sbjct: 19 NNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTRE 78

Query: 60 DAGYYECVADNPF 72
          D G Y C+     
Sbjct: 79 DTGTYTCMVSEEG 91

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (74), Expect = 0.001
 Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 5/70 (7%)

Query: 2  LGRKITFFCMAEGFPRPHI--TWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK 59
           G+     C   GF    I     K+   +   ++  +      +  +    E  P    
Sbjct: 18 NGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTP---T 74

Query: 60 DAGYYECVAD 69
          +   Y C  +
Sbjct: 75 EKDEYACRVN 84

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.3 bits (73), Expect = 0.001
 Identities = 14/72 (19%), Positives = 20/72 (27%), Gaps = 5/72 (6%)

Query: 1  MLGRKITFFCMAEGFPRPHIT--WTKDDIELTFHKYFQVHEWFLGNNT--IKSKMEIDPA 56
          +   K T  C+   F    +T  W  D   +              NN     S + + P 
Sbjct: 18 LQANKATLVCLISDFYPGAVTVAWKADSSPVK-AGVETTTPSKQSNNKYAASSYLSLTPE 76

Query: 57 TQKDAGYYECVA 68
            K    Y C  
Sbjct: 77 QWKSHRSYSCQV 88

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 32.1 bits (72), Expect = 0.002
 Identities = 12/68 (17%), Positives = 16/68 (23%), Gaps = 6/68 (8%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G    F       P  H  W      LT     ++ E        K  + +        G
Sbjct: 16 GETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDG-----KKHILILHNCQLGMTG 69

Query: 63 YYECVADN 70
               A N
Sbjct: 70 EVSFQAAN 77

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.0 bits (71), Expect = 0.002
 Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 6/70 (8%)

Query: 3  GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG 62
          G  +   C  EG       W   ++E +           LG        +++        
Sbjct: 17 GDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNR------K 70

Query: 63 YYECVADNPF 72
             C A+N  
Sbjct: 71 NVTCWAENDV 80

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

 Score = 31.9 bits (72), Expect = 0.002
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 2  LGRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEWFLGNNT--IKSKMEIDPAT 57
          LG+  T  C+ +   P   +ITW  +   +T     +       +++    S +   P  
Sbjct: 18 LGQPNTLICLVDNIFPPVVNITWLSNGQSVT-EGVSETSFLSKSDHSFFKISYLTFLP-- 74

Query: 58 QKDAGYYECV 67
                Y+C 
Sbjct: 75 -SADEIYDCK 83

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.7 bits (71), Expect = 0.003
 Identities = 13/77 (16%), Positives = 20/77 (25%), Gaps = 14/77 (18%)

Query: 2  LGRKITFFC------MAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDP 55
          +       C        E    P + W KD   L                  K ++ +  
Sbjct: 13 VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV--------KDRLIVMN 64

Query: 56 ATQKDAGYYECVADNPF 72
            +K  G Y C A   +
Sbjct: 65 VAEKHRGNYTCHASYTY 81

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.2 bits (70), Expect = 0.004
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 5/69 (7%)

Query: 1  MLGRKITFFCMAEGF--PRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQ 58
            G K    C+A  F   +  + WT+            V     G       + + P   
Sbjct: 13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPP--- 69

Query: 59 KDAGYYECV 67
          +D   Y C 
Sbjct: 70 QDTAPYSCH 78

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 31.0 bits (69), Expect = 0.004
 Identities = 10/70 (14%), Positives = 18/70 (25%), Gaps = 14/70 (20%)

Query: 3  GRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDA 61
          G  I   C +    P   +T+ ++     F +                      A    +
Sbjct: 15 GETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFSI-------------PQANHSHS 61

Query: 62 GYYECVADNP 71
          G Y C  +  
Sbjct: 62 GDYHCTGNIG 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	83
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.82
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.81
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.81
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.8
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.8
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.8
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.8
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.8
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.78
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.78
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.77
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.77
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.77
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.76
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.76
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.76
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.75
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.74
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.74
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.73
d2avga1	110	Cardiac myosin binding protein C, different domain	99.73
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.72
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.71
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.71
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.7
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.7
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.69
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.69
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.68
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.68
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.66
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.65
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.64
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.64
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.63
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.63
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.63
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.61
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.61
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.6
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.6
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.59
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.59
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.59
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.58
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.57
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.56
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.56
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.56
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.53
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.52
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.49
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.49
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.47
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.47
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.46
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.46
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.4
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.17
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.13
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	99.01
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.95
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.85
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.84
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.8
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.76
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.72
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.71
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.7
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.64
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.6
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.56
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.56
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.55
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.55
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.53
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.52
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.51
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.51
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.5
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.49
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.49
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.49
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.49
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.48
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.48
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.47
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.47
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.47
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.47
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.47
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.47
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.47
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.46
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.45
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	98.44
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.44
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.44
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	98.44
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.44
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.43
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.42
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	98.42
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.42
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.41
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	98.41
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.41
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.41
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.41
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	98.4
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.4
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	98.4
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.4
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.4
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.39
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.38
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.37
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	98.37
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.37
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	98.36
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.36
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.36
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.36
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.34
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.34
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.34
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.34
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.33
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	98.33
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.33
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	98.33
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.33
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	98.32
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.32
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.32
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	98.31
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.31
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.3
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.27
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.27
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	98.27
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.25
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	98.24
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.23
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	98.23
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	98.21
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.21
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.2
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.18
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.16
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.16
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.15
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	98.13
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	98.12
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.12
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	98.1
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.1
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.1
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.1
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.09
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.09
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.09
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.08
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	98.07
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.06
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.05
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	98.05
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.03
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.03
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.01
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	98.01
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.01
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.99
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.99
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.97
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.97
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.96
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.95
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.94
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.93
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.93
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.91
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.91
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.91
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.9
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.9
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.9
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.9
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.89
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.88
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.86
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.86
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.86
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.85
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.83
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.82
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.82
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.81
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.81
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.81
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.78
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.78
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.78
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.77
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.77
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.76
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.76
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.75
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.75
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.75
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.74
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.72
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.7
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.7
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.7
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.7
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.69
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.68
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.67
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.67
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.65
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.65
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.63
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.62
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.61
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.61
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.61
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.61
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.61
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.6
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.6
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.6
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.57
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.56
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.55
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.54
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.54
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.54
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.54
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.53
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.52
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.51
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.51
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.51
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.5
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.5
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.49
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.47
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.45
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.41
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.39
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.32
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.31
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.27
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.23
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.23
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	97.21
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.17
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.16
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.08
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	96.92
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	96.83
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.77
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	96.76
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	95.69
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	94.08
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	93.74
d1i1ra1	100	Cytokine receptor gp130 cytokine-binding domains {	93.51
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	93.33
d1xmwa2	66	CD3 epsilon chain ectodomain fragment {Sheep (Ovis	89.3
d2oz4a1	84	Intercellular cell adhesion molecule-1 (ICAM-1) {H	89.06
d2d9qb1	94	Granulocyte colony-stimulating factor (GC-SF) rece	87.12

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.7e-18  Score=76.40  Aligned_cols=80  Identities=18%  Similarity=0.337  Sum_probs=65.6

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      +....+.|.+.|.|.|.+.|++++..+.......+...........+.|.|..++..|.|.|.|.+.|..|.....+.|.
T Consensus        16 ~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~   95 (103)
T d1wwbx_          16 DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH   95 (103)
T ss_dssp             CCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred             ceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEEE
Confidence            45567889999999999999999999987655544443344555667899999999999999999999999998888765

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.81  E-value=1.5e-19  Score=78.64  Aligned_cols=72  Identities=25%  Similarity=0.554  Sum_probs=60.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|+++|..+.......+.         ...|.|..+..+|.|.|.|.+.|..|.......|
T Consensus        15 ~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~---------~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   85 (89)
T d1cs6a4          15 IGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS---------GGELRFSKLVLEDSGMYQCVAENKHGTVYASAEL   85 (89)
T ss_dssp             TTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE---------TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeee---------eeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEE
Confidence            5899999999999999999999999988776554432         2369999999999999999999999987776655


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        86 ~   86 (89)
T d1cs6a4          86 T   86 (89)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.81  E-value=1.1e-18  Score=77.11  Aligned_cols=77  Identities=16%  Similarity=0.026  Sum_probs=62.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+.............    ....|.|.++...|.|.|.|.+.|..|...+...|
T Consensus        18 ~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L   93 (98)
T d1g1ca_          18 QGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPED----NVCELVIRDVTGEDSASIMVKAINIAGETSSHAFL   93 (98)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEET----TEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccc----eEEEEEeccCccccCEEEEEEEEECCcEEEEEEEE
Confidence            58899999999999999999999999988765544332211    14579999999999999999999999988766655


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        94 ~   94 (98)
T d1g1ca_          94 L   94 (98)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.80  E-value=7.2e-19  Score=78.15  Aligned_cols=77  Identities=25%  Similarity=0.418  Sum_probs=63.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+.......+..    ......+|.|.+++..|.|.|.|.+.|..|.......|
T Consensus        22 ~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   97 (102)
T d1fhga_          22 EGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDY----DEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL   97 (102)
T ss_dssp             TTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEE----CTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             cCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEE----ecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEEE
Confidence            58999999999999999999999999988766554432    11224679999999999999999999999988777665


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        98 ~   98 (102)
T d1fhga_          98 L   98 (102)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=1.2e-19  Score=80.48  Aligned_cols=78  Identities=27%  Similarity=0.542  Sum_probs=59.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+...............   .+.|.|.+++.+|.|.|.|.+.|..|.....+.|
T Consensus        19 ~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   95 (100)
T d1qz1a3          19 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD---SSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL   95 (100)
T ss_dssp             SCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTT---SCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecC---ceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            5899999999999999999999999887653221110000111   2479999999999999999999999988777665


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        96 ~   96 (100)
T d1qz1a3          96 K   96 (100)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.80  E-value=9.4e-20  Score=80.43  Aligned_cols=77  Identities=21%  Similarity=0.396  Sum_probs=60.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+..............    .++|.|.++..+|.|.|.|.+.|..|.....+.|
T Consensus        19 ~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   94 (97)
T d3dara1          19 AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ----HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   94 (97)
T ss_dssp             TTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGG----GTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCC----cEEEEECCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            589999999999999999999999998875432111110011    2479999999999999999999999998887776


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        95 ~   95 (97)
T d3dara1          95 D   95 (97)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.80  E-value=2.1e-19  Score=78.47  Aligned_cols=77  Identities=27%  Similarity=0.446  Sum_probs=62.4

Q ss_pred             CCCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      ..|+.+.|.|.+.|.|.|.+.|++++..+.......+..     ....+.|.|.+++.+|+|.|.|.+.|..|.....+.
T Consensus        12 ~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~-----~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~   86 (91)
T d1tnna_          12 YEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT-----TKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFT   86 (91)
T ss_dssp             SSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEE-----CSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEE
T ss_pred             eCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeee-----ecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEE
Confidence            368999999999999999999999998777655433322     112467999999999999999999999999877776


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus        87 l~   88 (91)
T d1tnna_          87 LT   88 (91)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.80  E-value=5.2e-19  Score=76.94  Aligned_cols=71  Identities=25%  Similarity=0.467  Sum_probs=59.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+.... ....         ...|.|.++...|.|.|.|.+.|..|.......|
T Consensus        17 ~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~-~~~~---------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l   86 (89)
T d1biha4          17 QGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGR-ATVT---------DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV   86 (89)
T ss_dssp             TTSCEEEECEEEEESCCCCEEEETTEECCSSS-EEEE---------TTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCeEEEEEEEEEeCCCEEEEEeCCccCcccc-EEEe---------eeeEEECCCChhhCEEEEEEEEECCCEEEEEEEE
Confidence            58999999999999999999999999886542 2221         1259999999999999999999999988877766


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        87 ~   87 (89)
T d1biha4          87 Q   87 (89)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.9e-18  Score=76.68  Aligned_cols=76  Identities=20%  Similarity=0.274  Sum_probs=62.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+....+..+..  .   ...+.|.|.++..+|+|.|.|.+.|..|.....+.|
T Consensus        14 ~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~--~---~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   88 (101)
T d2cqva1          14 AGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN--S---ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL   88 (101)
T ss_dssp             TTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEE--C---SSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEE
T ss_pred             CCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEE--e---cceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            58999999999999999999999999887766554432  1   124679999999999999999999999988776655


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        89 ~   89 (101)
T d2cqva1          89 T   89 (101)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.78  E-value=3.5e-19  Score=78.03  Aligned_cols=77  Identities=21%  Similarity=0.229  Sum_probs=62.8

Q ss_pred             CCCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      ..|+.+.|.|.+.|.|.|.+.|++++..+...........  .   ....|.|.+++.+|+|.|.|.+.|..|.....+.
T Consensus        15 ~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~--~---~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   89 (93)
T d1wiua_          15 KAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAK--S---STTSIFFPSAKRADSGNYKLKVKNELGEDEAIFE   89 (93)
T ss_dssp             CSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEE--T---TEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeeccc--c---cceeeccccccccccEEEEEEEEECCCEEEEEEE
Confidence            3689999999999999999999999987776554433221  1   1457999999999999999999999999888776


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus        90 l~   91 (93)
T d1wiua_          90 VI   91 (93)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=7.4e-18  Score=73.42  Aligned_cols=77  Identities=18%  Similarity=0.362  Sum_probs=60.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce-eeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID-RRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~-~~~~~   80 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+.......+..   ......+.|.|.+++.+|.|.|.|.+.|..|.. .....
T Consensus        10 ~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~---~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~   86 (91)
T d1rhfa1          10 QGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPV---SEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVW   86 (91)
T ss_dssp             TTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEE---ETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEE
T ss_pred             CCCeEEEEEEEEecCCceEEEEEeecccccceeeeeee---cccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEEEE
Confidence            58999999999999999999999999887654433222   223345679999999999999999999999864 33444


Q ss_pred             E
Q psy11826         81 T   81 (83)
Q Consensus        81 ~   81 (83)
                      |
T Consensus        87 l   87 (91)
T d1rhfa1          87 L   87 (91)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.6e-18  Score=75.51  Aligned_cols=73  Identities=16%  Similarity=0.343  Sum_probs=58.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+.......        ....+.|.|.+++.+|.|.|.|.+.|..|.....+.|
T Consensus        15 ~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v   86 (90)
T d1vcaa2          15 IGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTN--------EGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV   86 (90)
T ss_dssp             TTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEE--------ETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEEEeccCCCCceEEEEecCccceeeeeee--------ecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEE
Confidence            58999999999999999999998776554322111        0114579999999999999999999999998887776


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        87 ~   87 (90)
T d1vcaa2          87 E   87 (90)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.77  E-value=9e-19  Score=77.21  Aligned_cols=75  Identities=24%  Similarity=0.364  Sum_probs=60.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+....+..+     ........|.|.++...|.|.|.|.+.|..|.......|
T Consensus        15 ~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   89 (97)
T d1koaa1          15 EGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMK-----RYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL   89 (97)
T ss_dssp             TTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBC-----CCSTTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECC
T ss_pred             CCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEE-----EecCCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEE
Confidence            589999999999999999999999998876544322     112224579999999999999999999999987666544

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.2e-18  Score=75.07  Aligned_cols=67  Identities=9%  Similarity=0.071  Sum_probs=55.8

Q ss_pred             CCCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      ++|+.+.|.|.+.|.|.|.+.|++++..+...               ...|.|.++..+|+|.|.|.+.|..|.....+.
T Consensus        12 ~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~---------------~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~   76 (84)
T d2nxyb2          12 LQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG---------------GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKID   76 (84)
T ss_dssp             ETTCCEEEEEECCTTCCCEEEEECTTCCEEEE---------------SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             ECCCeEEEEEEeEcCCchheEEEeecccceee---------------eeeeeeeecccccccEEEEEEEeCCCEEEEEEE
Confidence            36999999999999999999999876543322               126889999999999999999999998877776


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus        77 v~   78 (84)
T d2nxyb2          77 IV   78 (84)
T ss_dssp             EC
T ss_pred             EE
Confidence            54

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=6.7e-17  Score=72.03  Aligned_cols=77  Identities=17%  Similarity=0.323  Sum_probs=60.9

Q ss_pred             eEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826          5 KITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus         5 ~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      ...+.|.+.|.|.|.+.|++++..+.......... ........+.|.|.+++.+|.|.|.|.+.|..|.....+.|.
T Consensus        19 ~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~   95 (105)
T d1wwca_          19 EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY-YQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH   95 (105)
T ss_dssp             EEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEE-EECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeE-EeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEE
Confidence            34567788999999999999999887655433322 233445567899999999999999999999999988887765

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.76  E-value=8e-19  Score=76.60  Aligned_cols=70  Identities=31%  Similarity=0.400  Sum_probs=55.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++........        .   ....|.|.+++.+|.|.|.|.+.|..|.......|
T Consensus        19 ~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~--------~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   87 (91)
T d1cs6a3          19 TGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWL--------S---SEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI   87 (91)
T ss_dssp             TTCCEEEECEEEEESCCEEEEEECCSCCSCCCS--------B---SSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             cCCcEEEEEEEEEccCCEEEEEecccccceEee--------e---eeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEE
Confidence            589999999999999999999997644332110        0   02369999999999999999999999988776665


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        88 ~   88 (91)
T d1cs6a3          88 I   88 (91)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.76  E-value=1.6e-18  Score=76.38  Aligned_cols=78  Identities=17%  Similarity=0.287  Sum_probs=59.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee-eEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR-RGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~-~~~~   80 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+..........   ......++|.|.+++.+|+|.|.|.+.|..|... ..+.
T Consensus        17 ~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~---~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~   93 (97)
T d1biha3          17 AGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITR---HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLK   93 (97)
T ss_dssp             TTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEES---CSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEE
T ss_pred             cCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeee---eeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEEEE
Confidence            68999999999999999999999999886543322211   1111234799999999999999999999999754 3555


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus        94 L~   95 (97)
T d1biha3          94 LT   95 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.2e-17  Score=73.76  Aligned_cols=82  Identities=17%  Similarity=0.233  Sum_probs=63.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEE--Eec-----CCCeEEEEEEEccCCCCCCe-EEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHE--WFL-----GNNTIKSKMEIDPATQKDAG-YYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~l~i~~~~~~~~g-~y~C~~~~~~g   73 (83)
                      +|+.+.|.|.+.+.|.|.+.|.+++..+..........  ...     ......+.|.|..++.+|.| .|.|.+.|..|
T Consensus        16 ~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N~~G   95 (107)
T d1iray3          16 LGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG   95 (107)
T ss_dssp             TTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEECSSC
T ss_pred             CCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEEeCCC
Confidence            58999999999999999999999998876543211111  101     12234568999999999999 49999999999


Q ss_pred             ceeeEEEEeC
Q psy11826         74 IDRRGFRTDY   83 (83)
Q Consensus        74 ~~~~~~~~~~   83 (83)
                      .....+.|.+
T Consensus        96 ~~~~~i~L~~  105 (107)
T d1iray3          96 IDAAYIQLIY  105 (107)
T ss_dssp             EEEEEEEEEC
T ss_pred             eEEEEEEEEC
Confidence            9998888764

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.74  E-value=4.4e-17  Score=72.90  Aligned_cols=82  Identities=24%  Similarity=0.371  Sum_probs=57.4

Q ss_pred             CCCceEEEEeEeCccCCCeEEEEeCCEEeccc------ceEEEE--EEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFH------KYFQVH--EWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~------~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .+|+.+.|.|.+.|.|.|.+.|++++......      ......  ..........+.|.|.++..+|.|.|.|.+.|..
T Consensus        18 ~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   97 (109)
T d2fdbp2          18 VVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSI   97 (109)
T ss_dssp             CTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             ecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHCeEEEEEEEECC
Confidence            36899999999999999999999865432211      000100  1111223345689999999999999999999999


Q ss_pred             cceeeEEEEe
Q psy11826         73 AIDRRGFRTD   82 (83)
Q Consensus        73 g~~~~~~~~~   82 (83)
                      |.......|.
T Consensus        98 G~~~~~~~L~  107 (109)
T d2fdbp2          98 GISFHSAWLT  107 (109)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEEE
Confidence            9987777664

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.5e-16  Score=70.35  Aligned_cols=75  Identities=16%  Similarity=0.287  Sum_probs=58.2

Q ss_pred             EEeEeCccCCCeEEEEeCCEEecccceEEEEEE--ecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826          8 FFCMAEGFPRPHITWTKDDIELTFHKYFQVHEW--FLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus         8 ~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      +.|.+.|.|.|.+.|++++..+...........  ........+.|.|.++..+|.|.|.|.+.|..|.....+.|.
T Consensus        20 i~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~   96 (107)
T d1he7a_          20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAA   96 (107)
T ss_dssp             EEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEE
Confidence            456889999999999999998876543332221  112334567899999999999999999999999988887765

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1e-17  Score=74.56  Aligned_cols=75  Identities=21%  Similarity=0.330  Sum_probs=53.6

Q ss_pred             CCceEEEEeEeCccC-CCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAEGFP-RPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      +|+.+.|.|.+.+.| .|.+.|++++..+.....................|.|.+++.+|.|.|.|.+.|..|...
T Consensus        17 ~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   92 (104)
T d2aw2a1          17 AGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIE   92 (104)
T ss_dssp             TTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeEE
Confidence            689999999999998 589999997755432111000111112333355799999999999999999999998643

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.6e-16  Score=70.57  Aligned_cols=81  Identities=21%  Similarity=0.298  Sum_probs=61.1

Q ss_pred             CCceEEEEeEeCccC---CCeEEEEeCCEEecc---cceEEEEE-EecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFP---RPHITWTKDDIELTF---HKYFQVHE-WFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~---~~~~~w~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.|.|   .|.+.|++++.....   ........ .........+.|.|.+++..|+|.|.|.+.|..|.
T Consensus        18 ~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   97 (110)
T d2avga1          18 VGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKF   97 (110)
T ss_dssp             TTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEEETTEE
T ss_pred             CCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEEECCCe
Confidence            589999999999988   578999987643321   12222222 22234455678999999999999999999999999


Q ss_pred             eeeEEEEe
Q psy11826         75 DRRGFRTD   82 (83)
Q Consensus        75 ~~~~~~~~   82 (83)
                      ..+.+.|.
T Consensus        98 ~~~~~~L~  105 (110)
T d2avga1          98 DCSNFNLT  105 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            98887765

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=2.4e-17  Score=71.47  Aligned_cols=72  Identities=25%  Similarity=0.421  Sum_probs=57.4

Q ss_pred             CCCceEEEEeEeC-ccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          1 MLGRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         1 ~~g~~~~~~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      ..|+.+.|.|.+. +.|.|.+.|++++..+.......          ....|.|.+++..|+|.|.|.+.|..|......
T Consensus        15 ~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~   84 (89)
T d1gl4b_          15 RPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD----------FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTA   84 (89)
T ss_dssp             CTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEE----------ETTEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             eCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEe----------eceEEEEecCCcccCEEEEEEEEECCCEEEEEE
Confidence            3689999999986 67889999999887665443211          023699999999999999999999999887777


Q ss_pred             EEe
Q psy11826         80 RTD   82 (83)
Q Consensus        80 ~~~   82 (83)
                      .|.
T Consensus        85 ~l~   87 (89)
T d1gl4b_          85 TLH   87 (89)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.4e-16  Score=70.09  Aligned_cols=81  Identities=25%  Similarity=0.300  Sum_probs=59.8

Q ss_pred             CCceEEEEeEeCccC---CCeEEEEeCCEEec---ccceEEEEEE-ecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFP---RPHITWTKDDIELT---FHKYFQVHEW-FLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~---~~~~~w~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.|.|   .|.+.|++++....   .......... ........+.|.|.+++.+|+|.|.|.+.|..|.
T Consensus        14 ~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   93 (113)
T d2dava1          14 VGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKF   93 (113)
T ss_dssp             TTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSCE
T ss_pred             CCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEEeCCCE
Confidence            589999999999988   57999999764332   1222222222 2234455678999999999999999999999998


Q ss_pred             eeeEEEEe
Q psy11826         75 DRRGFRTD   82 (83)
Q Consensus        75 ~~~~~~~~   82 (83)
                      ..+.+.|.
T Consensus        94 ~~~~~~L~  101 (113)
T d2dava1          94 DSCSFDLE  101 (113)
T ss_dssp             EEECCEEE
T ss_pred             EEEEEEEE
Confidence            87766553

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=3.9e-17  Score=71.27  Aligned_cols=72  Identities=17%  Similarity=0.247  Sum_probs=55.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+..........  ..    ...|.|.+++.+|+|.|.|.+.|..+......
T Consensus        15 ~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~--~~----~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~   86 (92)
T d1epfa2          15 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV--LS----NNYLQIRGIKKTDEGTYRCEGRILARGEINFK   86 (92)
T ss_dssp             TTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEE--CT----TSCEEETTCCGGGCEEEEEEEEEGGGTEEEEE
T ss_pred             CCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeee--ee----eeeEEECCCCHHhCEEEEEEEEECcCCEEEEE
Confidence            68999999999999999999999998887654322211  11    12599999999999999999999776554433

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.70  E-value=8.9e-18  Score=73.95  Aligned_cols=75  Identities=25%  Similarity=0.371  Sum_probs=57.6

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee-eEEEE
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR-RGFRT   81 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~-~~~~~   81 (83)
                      ++.+.|.|.+.|.|.|.+.|++++..+...........  .    ...|.+..+..+|.|.|.|.+.|..|... ....|
T Consensus        22 ~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~--~----~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV--A----GDLVISNPVKAKDAGSYQCVATNARGTVVSREASL   95 (97)
T ss_dssp             CCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEE--T----TEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEE
T ss_pred             CCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEee--e----eeEEEEecccccCCEEEEEEEEECCCEEEEEEEEE
Confidence            46899999999999999999999998865432221111  1    23677888889999999999999999864 36777


Q ss_pred             eC
Q psy11826         82 DY   83 (83)
Q Consensus        82 ~~   83 (83)
                      +|
T Consensus        96 ~f   97 (97)
T d1cs6a1          96 RF   97 (97)
T ss_dssp             EE
T ss_pred             eC
Confidence            65

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.2e-17  Score=72.97  Aligned_cols=74  Identities=14%  Similarity=0.214  Sum_probs=58.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCe-EEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAG-YYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+.....       .........|.|.+++.+|.| .|.|.+.|..|.....+.
T Consensus        16 ~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~-------~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~~   88 (92)
T d2ifga1          16 VGDDVLLRCQVEGRGLEQAGWILTELEQSATVM-------KSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQ   88 (92)
T ss_dssp             TTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC-------CCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEEC
T ss_pred             CCCEEEEeeeccCCCCcEEEEEECCceeeeeee-------eeeeccceeEEEccccccccceEEEEEEEcCCCEEEEEEE
Confidence            689999999999999999999998865543211       011222457999999999998 699999999999887776


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus        89 l~   90 (92)
T d2ifga1          89 VN   90 (92)
T ss_dssp             CC
T ss_pred             EE
Confidence            54

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=8.6e-16  Score=67.47  Aligned_cols=77  Identities=22%  Similarity=0.329  Sum_probs=55.9

Q ss_pred             CCceEEEEeEeCccCC-CeEEEEe-CCEEecc-cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce-ee
Q psy11826          2 LGRKITFFCMAEGFPR-PHITWTK-DDIELTF-HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID-RR   77 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~-~~~~w~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~-~~   77 (83)
                      .|+.+.|.|.+.+.|+ |.+.|++ ++..+.. ..+....... .   ..++|.|.+++.+|.|.|.|.+.|..|.. ..
T Consensus        14 ~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~-~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   89 (97)
T d1epfa1          14 VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWND-D---DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEA   89 (97)
T ss_dssp             TTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEE-T---TEEEEEECSCCGGGCEEEEEEEEETTTEEEEE
T ss_pred             cCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeec-C---cceEEEcccCchhhceEEEEEEEeCCCcEEEE
Confidence            5899999999999885 7999998 4454443 3333332211 1   14679999999999999999999999864 34


Q ss_pred             EEEEe
Q psy11826         78 GFRTD   82 (83)
Q Consensus        78 ~~~~~   82 (83)
                      .+.|.
T Consensus        90 tv~l~   94 (97)
T d1epfa1          90 TVNVK   94 (97)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55553

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8e-17  Score=70.04  Aligned_cols=71  Identities=18%  Similarity=0.148  Sum_probs=55.8

Q ss_pred             CCceEEEEeEeC-ccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      +|+++.|.|.+. +.|.|.+.|.+.+..+.....       .   ...+.|.|.+++.+|+|.|.|.+.|..|.......
T Consensus        17 ~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~~~-------~---~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~   86 (90)
T d1gsma1          17 LGASRQLTCRLACADRGASVQWRGLDTSLGAVQS-------D---TGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQ   86 (90)
T ss_dssp             TTCCEEEEEEECCSSTTCEEEEESSTTTTCCEEE-------E---SSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eCCcEEEEEEecCCCCccEEEEEEeeeeeeeeec-------c---CceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEE
Confidence            689999999875 789999999987654432110       0   11467999999999999999999999998887776


Q ss_pred             Ee
Q psy11826         81 TD   82 (83)
Q Consensus        81 ~~   82 (83)
                      |.
T Consensus        87 l~   88 (90)
T d1gsma1          87 LL   88 (90)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.3e-17  Score=75.10  Aligned_cols=77  Identities=21%  Similarity=0.354  Sum_probs=58.1

Q ss_pred             CCCceEEEEeEeCccCCCeEEEEeCCEEecccc-----------------------------eEEEEEEecCCCeEEEEE
Q psy11826          1 MLGRKITFFCMAEGFPRPHITWTKDDIELTFHK-----------------------------YFQVHEWFLGNNTIKSKM   51 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~l   51 (83)
                      +.|+.+.|.|.+.|.|.|.+.|++++..+....                             +..+.     .....+.|
T Consensus        22 ~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L   96 (130)
T d1gxea_          22 VAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVE-----TTKDRSIF   96 (130)
T ss_dssp             SSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEE-----EETTEEEE
T ss_pred             EcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEE-----ECCCEEEE
Confidence            368999999999999999999998765443110                             00000     01124679


Q ss_pred             EEccCCCCCCeEEEEEeeCCCcceeeEEEEe
Q psy11826         52 EIDPATQKDAGYYECVADNPFAIDRRGFRTD   82 (83)
Q Consensus        52 ~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~~   82 (83)
                      .|.++..+|+|.|.|.+.|..|.....+.|.
T Consensus        97 ~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~  127 (130)
T d1gxea_          97 TVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK  127 (130)
T ss_dssp             ECSCCCTTTCEEEEEEEECSSCEEEEEEEEE
T ss_pred             EECcCChhcCEEEEEEEEECCCEEEEEEEEE
Confidence            9999999999999999999999988877664

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.6e-16  Score=67.72  Aligned_cols=60  Identities=18%  Similarity=0.304  Sum_probs=48.3

Q ss_pred             CCceEEEEeEeCccCCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.|.|.| .+.|++++..+.....              ..+.|.....+|+|.|.|.+.|..|..
T Consensus        15 ~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~--------------~~~~l~~~~~~d~G~Y~C~A~N~~G~~   75 (85)
T d1rhfa2          15 PNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP--------------SPSVLNVTGVTQSTMFSCEAHNLKGLA   75 (85)
T ss_dssp             TTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE--------------SSEEEEECCCSSCEEEEEEEEETTEEE
T ss_pred             CCCEEEEEEEEecCCcceEEEEEECCEECCCCCC--------------cceEEecCCccccEEEEEEEEcCCCcE
Confidence            58999999999999988 8999999988765431              123445566779999999999999964

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.4e-15  Score=65.87  Aligned_cols=76  Identities=20%  Similarity=0.298  Sum_probs=55.5

Q ss_pred             CCceEEEEeEeCccCCC-eEEEEeCCEEe----ccc--ceEEEEEEecCCCeEEEEEEEccCC-CCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRP-HITWTKDDIEL----TFH--KYFQVHEWFLGNNTIKSKMEIDPAT-QKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-~~~w~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+.+.|.| .+.|++++...    ...  ..+.+..     ....+.|.|.++. .+|+|.|.|.+.|..|
T Consensus        16 ~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G   90 (101)
T d3b5ha1          16 EGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS-----SQGRSELHIENLNMEADPGQYRCNGTSSKG   90 (101)
T ss_dssp             TTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEE-----ETTEEEEEECSCCTTTSSEEEEEEEEETTE
T ss_pred             cCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEe-----CCCEEEEEEeccccccCCEEEEEEEEECCC
Confidence            68999999999999988 69999865322    111  1222221     1124579999998 5789999999999999


Q ss_pred             ceeeEEEEe
Q psy11826         74 IDRRGFRTD   82 (83)
Q Consensus        74 ~~~~~~~~~   82 (83)
                      .......|.
T Consensus        91 ~~~~~~~L~   99 (101)
T d3b5ha1          91 SDQAIITLR   99 (101)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            988777664

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.1e-17  Score=71.05  Aligned_cols=63  Identities=24%  Similarity=0.193  Sum_probs=51.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .|+.+.|.|.+.|.|.|.+.|++++..+....                  .+..++.+|+|.|.|.+.|..|.....+.|
T Consensus        18 ~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~------------------~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l   79 (84)
T d2oz4a3          18 ENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG------------------ESVTVTRDLEGTYLCRARSTQGEVTREVTV   79 (84)
T ss_dssp             TTCEECCCCCCEEESCCEEEEEETTTEECCTT------------------SCEECCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEEEEEeEcCccEEEEEEeeccceeee------------------eeeccccCCCCEEEEEEEcCCCEEEEEEEE
Confidence            58899999999999999999999887655322                  123567899999999999999988777665


Q ss_pred             e
Q psy11826         82 D   82 (83)
Q Consensus        82 ~   82 (83)
                      .
T Consensus        80 ~   80 (84)
T d2oz4a3          80 N   80 (84)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7e-16  Score=67.37  Aligned_cols=65  Identities=15%  Similarity=0.202  Sum_probs=50.0

Q ss_pred             CCceEEEEeEeCccCC-CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPR-PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.+.+.++ +.+.|++++..+..........        ..+|.|.+++.+|+|.|.|.+.|..+.
T Consensus        20 ~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~--------~~~L~I~~v~~~D~G~Y~C~a~n~~~~   85 (93)
T d1n26a1          20 PGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM--------GRRLLLRSVQLHDSGNYSCYRAGRPAG   85 (93)
T ss_dssp             TTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEE--------SSEEEECSCCGGGCEEEEEESSSSCSC
T ss_pred             CCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecC--------CCEEEECCCChhcCEEEEEEECCcccc
Confidence            5899999999888765 5899999987776543322111        236999999999999999999876543

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2e-15  Score=65.49  Aligned_cols=66  Identities=20%  Similarity=0.337  Sum_probs=50.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccce--EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKY--FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+ +.|.|.+.|++++..+.....  ..+..  ..   ....|.|.++..+|+|.|.|.+.|..+
T Consensus        14 ~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~--~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~~   81 (90)
T d1x44a1          14 CGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRV--EG---KKHILIIEGATKADAAEYSVMTTGGQS   81 (90)
T ss_dssp             TTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEE--ET---TEEEEEEEEECTTTCSEEEEEETTEEE
T ss_pred             CCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEE--eC---CccEEEECccccccCEEEEEEEecceE
Confidence            68999999997 568889999999988765433  22221  11   145799999999999999999987543

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=2.2e-16  Score=70.78  Aligned_cols=75  Identities=23%  Similarity=0.465  Sum_probs=52.4

Q ss_pred             CCceEEEEeEeC-ccCCCeEEEEeCCEEecccceEEEEEEecCC---CeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAE-GFPRPHITWTKDDIELTFHKYFQVHEWFLGN---NTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      +|+.+.|.|.+. +.|.+.+.|++++..+...............   ....+.|.|.+++.+|.|.|.|.+.|..|...
T Consensus        16 ~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~   94 (110)
T d1f97a2          16 IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAM   94 (110)
T ss_dssp             TTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCE
T ss_pred             cCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCcEE
Confidence            589999999974 7999999999999877543321111000000   01123689999999999999999999998754

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.7e-17  Score=72.13  Aligned_cols=80  Identities=15%  Similarity=0.282  Sum_probs=54.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCC---CeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGN---NTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG   78 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~   78 (83)
                      .|+.+.|.|.+.+.|.|.+.|++++..+...............   ....++|.|.+++.+|.|.|.|.+.|..|.....
T Consensus        18 ~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~   97 (105)
T d1nbqa1          18 ENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGE   97 (105)
T ss_dssp             TTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETTSSCEEC
T ss_pred             CCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEECCCCEEEE
Confidence            5889999999999999999999865433221110000000000   1112479999999999999999999999987655


Q ss_pred             EEE
Q psy11826         79 FRT   81 (83)
Q Consensus        79 ~~~   81 (83)
                      ..|
T Consensus        98 ~~v  100 (105)
T d1nbqa1          98 VKV  100 (105)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            444

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.63  E-value=1.8e-16  Score=70.65  Aligned_cols=72  Identities=15%  Similarity=0.276  Sum_probs=53.1

Q ss_pred             CCceEEEEeEe-CccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeE
Q psy11826          2 LGRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG   78 (83)
Q Consensus         2 ~g~~~~~~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~   78 (83)
                      +|+.+.|.|.+ .+.|.|.+.|++++..+......+...  ...   ...|.|.+++.+|.|.|.|.+.|..|.....
T Consensus        18 eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~--~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          18 EGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV--SQT---TGNLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             TTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEE--CTT---TCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             CCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeee--ecC---CCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence            58999999996 688999999999886554322111111  011   1369999999999999999999988876544

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.5e-15  Score=66.54  Aligned_cols=67  Identities=25%  Similarity=0.546  Sum_probs=53.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      +|+.+.|.|.+.+ +.+.+.|++++..+.......+..   .    ...|.|..++.+|.|.|.|.+.|..|...
T Consensus        17 ~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~---~----~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~   83 (96)
T d1l6za2          17 ELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQ---N----NSILRIDPIKREDAGEYQCEISNPVSVRR   83 (96)
T ss_dssp             TTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEET---T----TTEEEECSCCGGGCEEEEEEEESSSCCEE
T ss_pred             CCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccC---C----ceEEEEeccchhhceEEEEEEEeCCCCeE
Confidence            6899999999755 567899999999887765544321   1    23699999999999999999999988654

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.61  E-value=2.6e-15  Score=64.94  Aligned_cols=62  Identities=18%  Similarity=0.356  Sum_probs=49.5

Q ss_pred             CCCceEEEEeEeCcc-CCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          1 MLGRKITFFCMAEGF-PRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      ++|+.+.|.|.+.+. |.+.+.|++++..+.....             ...|.|..++.+|+|.|.|.+.|..|..
T Consensus        13 ~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~~-------------~~~l~i~~v~~~dsG~Y~C~a~n~~g~~   75 (88)
T d2fcba2          13 QEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRS-------------DPNFSIPQANHSHSGDYHCTGNIGYTLY   75 (88)
T ss_dssp             CTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEESS-------------CCEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             ecCCeEEEEEEecCCCCCcEEEEEeeccccccccc-------------ccccccCccCHHHCCeEEEEEEeCCCCE
Confidence            369999999998654 5668999999976643221             2368899999999999999999988764

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.60  E-value=7.3e-16  Score=67.34  Aligned_cols=69  Identities=17%  Similarity=0.372  Sum_probs=53.6

Q ss_pred             CCceEEEEeEeCccCCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      .|+.+.|.|.+.+.|.| .+.|+++|..+..........  ..    ..+|.|..+..+|.|.|.|.+.|..|...
T Consensus        16 ~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~--~~----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   85 (94)
T d1biha1          16 ENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR--KD----EGSLVFLRPQASDEGHYQCFAETPAGVAS   85 (94)
T ss_dssp             TTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEEC--TT----SCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeec--cc----ceEEEEeccChhcCeEEEEEEEeCCCEEE
Confidence            58899999999999876 699999998876543222111  11    23699999999999999999999999753

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=9e-15  Score=63.86  Aligned_cols=66  Identities=20%  Similarity=0.382  Sum_probs=50.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccc-eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK-YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+.|.|.+ +.|.|.+.|++++..+.... ...+..  ..   ....|.|.++...|+|.|.|.+.|..+
T Consensus        20 ~G~~v~l~c~v-~~p~~~v~W~k~g~~i~~~~~~~~~~~--~~---~~~~L~I~~~~~~D~G~Y~c~a~n~~~   86 (94)
T d1pd6a_          20 KGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFES--IG---AKRTLTISQCSLADDAAYQCVVGGEKC   86 (94)
T ss_dssp             TTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEE--ET---TEEEEEECSCSSSSCEEEEEEETTEEE
T ss_pred             cCCeEEEEEEE-CCCCceEEEEEcCccceeeeeeEeeec--cC---CeEEeecCCCCceecEEEEEEEeeEEE
Confidence            58999999997 45888999999999886543 222221  11   145799999999999999999987543

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.3e-15  Score=64.54  Aligned_cols=73  Identities=21%  Similarity=0.224  Sum_probs=49.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG   78 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~   78 (83)
                      .|+.+.|.|.+.|.|.|.+.|+.  .+...........    .......++|.|.++..+|.|.|.|.+.|..|.....
T Consensus        15 ~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~   89 (96)
T d2c9aa1          15 AGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKV----TSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISN   89 (96)
T ss_dssp             SSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEE----EETTEEEEEEEECSCCGGGCSEEEEEEEETTEEEEEE
T ss_pred             CCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeE----EEeecCceEEEECCCCHHHCeEEEEEEEeCCCeEEEE
Confidence            68999999999999988655432  2222221111111    1122334579999999999999999999999976443

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=2.5e-15  Score=66.64  Aligned_cols=66  Identities=20%  Similarity=0.329  Sum_probs=51.2

Q ss_pred             CCceEEEEe------EeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFC------MAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C------~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      +|....+.|      ...+.|.|.+.|++++..+..........        ...|.|.++..+|+|.|.|.+.|..+..
T Consensus        13 ~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~--------~~~L~I~~v~~~D~G~Y~C~a~n~~~g~   84 (103)
T d1iray2          13 VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV--------KDRLIVMNVAEKHRGNYTCHASYTYLGK   84 (103)
T ss_dssp             SSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEE--------TTEEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             cCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEec--------CCEEEEcccccccCcEEEEEEEECcCCE
Confidence            578889999      45688999999999999887543221111        1369999999999999999999877643

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.59  E-value=4.3e-15  Score=64.36  Aligned_cols=61  Identities=20%  Similarity=0.197  Sum_probs=48.4

Q ss_pred             CCceEEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      +|+.+.|.|.+.+ .|.+.+.|+++|..+.....             ...|.|..++.+|+|.|.|.+.|..+..
T Consensus        16 eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~~-------------~~~l~I~~v~~~dsG~Y~C~a~n~~~~~   77 (89)
T d1fnla2          16 EEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHH-------------NSDFHIPKATLKDSGSYFCRGLVGSKNV   77 (89)
T ss_dssp             TTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEE-------------CCCEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             cCCeEEEEEEecCCCCCcEEEEEEcccccceecc-------------ccccEECccceeccceEEEEEEeCCCCe
Confidence            6999999999864 55667999999976643211             2358899999999999999999987754

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.7e-15  Score=67.02  Aligned_cols=80  Identities=19%  Similarity=0.223  Sum_probs=53.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEeccc--ceEEEEEE-ecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFH--KYFQVHEW-FLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG   78 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~   78 (83)
                      .|+.+.|.|.+.+.|.|.+.|++.+......  ........ ........++|.|.+++.+|.|.|.|.+.|..|.....
T Consensus        15 ~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~   94 (102)
T d1f97a1          15 ENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGE   94 (102)
T ss_dssp             TTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEETTSSSEEE
T ss_pred             CCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEECCCCEEEE
Confidence            5899999999999999999999744221110  00000000 00001123479999999999999999999999886655


Q ss_pred             EEE
Q psy11826         79 FRT   81 (83)
Q Consensus        79 ~~~   81 (83)
                      ..+
T Consensus        95 ~~v   97 (102)
T d1f97a1          95 VSI   97 (102)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.2e-15  Score=66.55  Aligned_cols=67  Identities=15%  Similarity=0.248  Sum_probs=50.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      .|+++.|.|.+.+ |.|.+.|++++..+........    ...   ...|.|.++..+|.|.|.|.+.|..+...
T Consensus        11 ~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~----~~~---~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~   77 (92)
T d1olza1          11 HGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYG----LMG---RKNLLIFNLSEGDSGVYQCLSEERVKNKT   77 (92)
T ss_dssp             TTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBC----CTT---TTCEEECSCCGGGCEEEEEEEEEECSSSE
T ss_pred             CCCEEEEEEEeec-cCCceeeecCcccceeeeeeee----cce---eeEEEECCCCHHHCcEEEEEEEEcCCCEE
Confidence            6899999999887 7789999999887754321100    011   12599999999999999999999887544

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=9.7e-17  Score=71.28  Aligned_cols=77  Identities=23%  Similarity=0.390  Sum_probs=54.9

Q ss_pred             CCceEEEEeEe-CccCCCeEEEEeCCEEecccceEEEEEEe--cCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeE
Q psy11826          2 LGRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVHEWF--LGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG   78 (83)
Q Consensus         2 ~g~~~~~~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~   78 (83)
                      .|+.+.|.|.+ .|.|.|.+.|++++..+............  .......+.|.|.+++.+|.|.|.|.+.|..|.....
T Consensus        16 ~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s   95 (104)
T d1nbqa2          16 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTS   95 (104)
T ss_dssp             TTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEEC
T ss_pred             cCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCceEEE
Confidence            58999999987 58999999999998876543221110000  0001123468899999999999999999999977553

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.7e-15  Score=67.59  Aligned_cols=80  Identities=23%  Similarity=0.343  Sum_probs=60.1

Q ss_pred             CCceEEEEeEeCcc-CCCeEEEEeCCEEecccc--eEEEEEEecCCCeEEEEEEEccCCCCC-CeEEEEEeeCCCcceee
Q psy11826          2 LGRKITFFCMAEGF-PRPHITWTKDDIELTFHK--YFQVHEWFLGNNTIKSKMEIDPATQKD-AGYYECVADNPFAIDRR   77 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~g~~~~   77 (83)
                      .|+.+.|.|.+.+. |.+.+.|++++..+....  ...+... .......+.|.|.++..+| .|.|.|.+.|..|....
T Consensus        20 ~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~-~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~   98 (115)
T d2crya1          20 HGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETI-STEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTE   98 (115)
T ss_dssp             TTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEE-EETTEEEEEEECTTCCHHHHHSCEEEEEECSSCEEEE
T ss_pred             cCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeee-ccccCcEEEEEEeccchhcCCeEEEEEEEECCCeEEE
Confidence            58899999999885 455799999988776532  2222222 2233445679999999999 69999999999999988


Q ss_pred             EEEEe
Q psy11826         78 GFRTD   82 (83)
Q Consensus        78 ~~~~~   82 (83)
                      .+.|.
T Consensus        99 ~~~L~  103 (115)
T d2crya1          99 IIRLK  103 (115)
T ss_dssp             EECCC
T ss_pred             EEEEE
Confidence            87664

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.3e-15  Score=66.58  Aligned_cols=74  Identities=26%  Similarity=0.308  Sum_probs=55.6

Q ss_pred             CCceEEEEeEeC-ccCCCeEEEEeCCEEeccc--ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeE
Q psy11826          2 LGRKITFFCMAE-GFPRPHITWTKDDIELTFH--KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRG   78 (83)
Q Consensus         2 ~g~~~~~~C~~~-~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~   78 (83)
                      .|+.+.+.|.+. +.|.+.+.|++++..+...  ...++..       ...+|.|.+++.+|+|.|.|.+.|..|.....
T Consensus        16 ~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~-------~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   88 (101)
T d1iray1          16 ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ-------HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK   88 (101)
T ss_dssp             TTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEE-------ETTEEEETTCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             CCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEec-------cCCEEEeccceecCCEEEEEEEECCCCeEEEE
Confidence            478899999874 6789999999988554321  1111111       12379999999999999999999999998877


Q ss_pred             EEEe
Q psy11826         79 FRTD   82 (83)
Q Consensus        79 ~~~~   82 (83)
                      +.|.
T Consensus        89 ~~L~   92 (101)
T d1iray1          89 ISAK   92 (101)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7664

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.7e-14  Score=60.74  Aligned_cols=61  Identities=20%  Similarity=0.205  Sum_probs=49.0

Q ss_pred             CCceEEEEeEeCcc-CCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEGF-PRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.|.|.+.+. +...+.|+++|..+.....             ...|.|..++.+|+|.|.|.+.|..+..
T Consensus        14 eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~-------------~~~l~i~~~~~~dsG~Y~C~a~n~~~~~   75 (89)
T d1f2qa2          14 EGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE-------------NHNISITNATVEDSGTYYCTGKVWQLDY   75 (89)
T ss_dssp             TTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC-------------SSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCCEEEEEEEecCCCCCeEEEEEEeeeccccccc-------------cceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence            68999999998765 4457899999987764321             1368899999999999999999977654

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.52  E-value=4.3e-14  Score=60.63  Aligned_cols=64  Identities=19%  Similarity=0.287  Sum_probs=50.9

Q ss_pred             CCceEEEEeEeCccCCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      .|+.+.|.|.+.+.+.+ .+.|++++..+....               ..|.|..++.+|.|.|.|.+.|..++....+.
T Consensus        18 ~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~---------------~~l~i~~v~~~dsG~Y~C~a~ns~~S~~v~l~   82 (85)
T d2fcba1          18 QEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT---------------QPSYRFKANNNDSGEYTCQTGQTSLSDPVHLT   82 (85)
T ss_dssp             TTCEEEEEEECSSCCCTTCCEEEETTEECTTCC---------------SSEEEEECCGGGCEEEEEECTTSBCCCCEEEE
T ss_pred             CCCeEEEEEEEeeccceeEEEeecccccccccc---------------cceEEeeccccCCcEEEEECCCCcccccEEEE
Confidence            68999999999888876 478899998776542               24778899999999999999987766554443

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.49  E-value=2e-13  Score=58.38  Aligned_cols=63  Identities=22%  Similarity=0.343  Sum_probs=49.0

Q ss_pred             CCceEEEEeEeCccCCCe-EEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEE
Q psy11826          2 LGRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~   79 (83)
                      .|+.++|.|.+.+.|.+. +.|++++..+....               ..|.|..++.+|+|.|.|.+.+...+....+
T Consensus        19 ~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~i~~~~~~d~G~Y~C~a~~s~~S~~v~L   82 (84)
T d1fnla1          19 EKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA---------------SSYFIDAATVNDSGEYRCQTNLSTLSDPVQL   82 (84)
T ss_dssp             TTCCEEEEEECCCBTTBCCCEEEETTEEEESSC---------------SEEEESSCCGGGCEEEEEECSSSCCCCCEEE
T ss_pred             CCCeEEEEEEeccCCCCeEEEEeeeceeeeecc---------------eeeEecCCcccCCEEEEEEccCCCccccEEE
Confidence            689999999999988886 45677876654332               2689999999999999999988766544333

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.49  E-value=4.4e-15  Score=64.31  Aligned_cols=67  Identities=19%  Similarity=0.143  Sum_probs=53.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      .|+.+.|.|.. +.|.|.+.|+++|..+.......+...  +   ..++|.|.++..+|+|.|.|.+.|..+.
T Consensus        15 ~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~--~---~~~~L~I~~~~~~D~G~Y~c~a~n~~~s   81 (89)
T d1tiua_          15 VGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIED--G---KKHILILHNCQLGMTGEVSFQAANAKSA   81 (89)
T ss_dssp             TTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEEC--S---SCEEEECCSCCSCCCSEECCBCSSCBCC
T ss_pred             CCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEee--c---eeEEEEEcCCChhcCEEEEEEECceEEE
Confidence            58899999996 578899999999998877665544331  1   2357999999999999999999876544

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.7e-13  Score=59.50  Aligned_cols=78  Identities=15%  Similarity=0.154  Sum_probs=52.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCe-----EEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNT-----IKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      +|++++|.|.. ..|.+.+.|.+++..+.................     ...+|.|.+++.+|+|.|.|.+.+..+...
T Consensus         9 ~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~~t~~   87 (93)
T d1ccza1           9 VYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMK   87 (93)
T ss_dssp             TTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCCSCEE
T ss_pred             ECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCCcEEE
Confidence            68999999985 568889999998876542111111110001110     124699999999999999999988877665


Q ss_pred             eEEE
Q psy11826         77 RGFR   80 (83)
Q Consensus        77 ~~~~   80 (83)
                      ..+.
T Consensus        88 ~~l~   91 (93)
T d1ccza1          88 FFLY   91 (93)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5444

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.8e-13  Score=58.26  Aligned_cols=64  Identities=19%  Similarity=0.295  Sum_probs=47.5

Q ss_pred             CCceEEEEeEeCccCCCe-EEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceeeEEE
Q psy11826          2 LGRKITFFCMAEGFPRPH-ITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRRGFR   80 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~   80 (83)
                      +|+.+.|.|.+.+.|.+. ..|++++..+....               ..|.|..++.+|+|.|.|.+.+........+.
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~i~~v~~~d~G~Y~C~a~~s~~S~~v~l~   79 (82)
T d1f2qa1          15 KGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN---------------SSLNIVNAKFEDSGEYKCQHQQVNESEPVYLE   79 (82)
T ss_dssp             TTCCEEEECCTTCC----CCEEEETTEECSCCS---------------SEEEECSCCGGGCEEEEEECTTSSCCCCEEEE
T ss_pred             CCCeEEEEEEEeeeeeecceeeeeeeeeeeccc---------------ceeEECCCChhhCCcEEEEecCCCCcccEEEE
Confidence            699999999999988875 46678887665432               25889999999999999999987766544443

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=4.1e-13  Score=59.43  Aligned_cols=67  Identities=15%  Similarity=0.314  Sum_probs=50.6

Q ss_pred             CCceEEEEeEeCc-cCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          2 LGRKITFFCMAEG-FPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      +|+.++|.|.+.| .|.|  .+.|++++..+....        .......+.|.|......|.|.|.|.+.|..|...
T Consensus        18 ~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~--------~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~   87 (103)
T d1iama1          18 VGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP--------AVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQG   87 (103)
T ss_dssp             TTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE--------CCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGT
T ss_pred             CCCEEEEEEEecCCCCCCceEEEEccccccccccc--------cccccceEEEEEeeehhHCCCEEEEEEEeCCCCcc
Confidence            6999999999876 5655  578999998764321        12233456789988888899999999999887643

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.46  E-value=1.4e-15  Score=68.32  Aligned_cols=75  Identities=21%  Similarity=0.338  Sum_probs=51.5

Q ss_pred             CCceEEEEeEe-CccCCCeEEEEeCCEEecccceEEEE--EEecCCCeEEEEEEEccCCCCCCe---EEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMA-EGFPRPHITWTKDDIELTFHKYFQVH--EWFLGNNTIKSKMEIDPATQKDAG---YYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~g---~y~C~~~~~~g~~   75 (83)
                      +|+.+.|.|.+ .|.|.|.+.|++++..+.........  ......   ..+|.|.+++.+|+|   .|.|.+.|..|..
T Consensus        16 EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~   92 (111)
T d1biha2          16 EGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGP---DGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE   92 (111)
T ss_dssp             TTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECT---TSCEEEEEECGGGCCSSEEEEEEEECTTCSS
T ss_pred             CCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecccc---ccccEEeeeEeeccCCceEEEEEEEeCCCCc
Confidence            69999999986 79999999999976554332111000  000000   135888888888766   7999999999887


Q ss_pred             eeEE
Q psy11826         76 RRGF   79 (83)
Q Consensus        76 ~~~~   79 (83)
                      ...+
T Consensus        93 ~~~~   96 (111)
T d1biha2          93 EVVL   96 (111)
T ss_dssp             CEEE
T ss_pred             eEEE
Confidence            6554

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.7e-13  Score=60.95  Aligned_cols=71  Identities=10%  Similarity=0.194  Sum_probs=48.5

Q ss_pred             CCceEEEEeEeCc-cC--CCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEG-FP--RPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~--~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      +|+.++|.|.+.| .|  .+.+.|++++..+........   ........+.|.+......|.|.|+|.|.|..+..
T Consensus        16 ~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~---~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~   89 (106)
T d1zxqa1          16 VGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKA---APAPQEATATFNSTADREDGHRNFSCLAVLDLMSR   89 (106)
T ss_dssp             TTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSS---TTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGG
T ss_pred             CCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceE---eecccceeEEEEEeeehhcCCcEEEEEEEecCCCC
Confidence            6899999999986 44  457899999987754221100   01223345567777666677789999999987643

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=9.2e-11  Score=53.12  Aligned_cols=81  Identities=11%  Similarity=0.112  Sum_probs=49.3

Q ss_pred             CCceEEEEeEeCc---cCCCeEEEEeCCEEec-----------cc----ceEEEEEEecCCCeEEEEEEEccCCCCCCeE
Q psy11826          2 LGRKITFFCMAEG---FPRPHITWTKDDIELT-----------FH----KYFQVHEWFLGNNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         2 ~g~~~~~~C~~~~---~~~~~~~w~~~~~~~~-----------~~----~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   63 (83)
                      .|+++.|.|....   .....+.|++.+....           ..    ...+.............+|.|.+++.+|+|.
T Consensus        16 ~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~G~   95 (126)
T d1pkoa_          16 VGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGG   95 (126)
T ss_dssp             TTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGGCEE
T ss_pred             cCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchhHCeE
Confidence            6899999998643   2334689987542110           00    0000000001112235689999999999999


Q ss_pred             EEEEeeCCCcceeeEEEEe
Q psy11826         64 YECVADNPFAIDRRGFRTD   82 (83)
Q Consensus        64 y~C~~~~~~g~~~~~~~~~   82 (83)
                      |.|.+.+..+.....+.|.
T Consensus        96 Y~C~v~~~~~~~~~~v~L~  114 (126)
T d1pkoa_          96 YTCFFRDHSYQEEAAVELK  114 (126)
T ss_dssp             EEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEEE
Confidence            9999998877766655543

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=2e-11  Score=53.40  Aligned_cols=81  Identities=14%  Similarity=0.117  Sum_probs=50.0

Q ss_pred             CCceEEEEeEeCc--cCCCeEEEEeCCEEecccceEEEEEEecCCC--eEEEEEEEccCCCCCCeEEEEEeeCCCcce--
Q psy11826          2 LGRKITFFCMAEG--FPRPHITWTKDDIELTFHKYFQVHEWFLGNN--TIKSKMEIDPATQKDAGYYECVADNPFAID--   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~--   75 (83)
                      +|+.+.|.|....  .....|.|.+++..+................  ....+|.|.+++.+|+|.|.|.+.+..|..  
T Consensus         9 ~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~   88 (98)
T d1hnga1           9 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRIL   88 (98)
T ss_dssp             TTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEE
T ss_pred             cCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCCEEE
Confidence            6899999996322  2234799999887654211000000000000  001369999999999999999999888764  


Q ss_pred             eeEEEEe
Q psy11826         76 RRGFRTD   82 (83)
Q Consensus        76 ~~~~~~~   82 (83)
                      ...+.|.
T Consensus        89 ~~~~~L~   95 (98)
T d1hnga1          89 NKALDLR   95 (98)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            4555554

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.1e-08  Score=44.31  Aligned_cols=71  Identities=17%  Similarity=0.323  Sum_probs=46.9

Q ss_pred             CceEEEEeEeCc-cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          3 GRKITFFCMAEG-FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         3 g~~~~~~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      ++.+.|.|.+.| +|.+.|.|.+++..+............++.+...+.|.+.   ..+...|.|.+....-...
T Consensus        16 ~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~~   87 (95)
T d1dr9a2          16 SNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVN   87 (95)
T ss_dssp             TTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCEE
T ss_pred             CCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCCc
Confidence            567889999887 6888999999998776543222221112234455667765   3456789999987655443

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.8e-10  Score=49.52  Aligned_cols=70  Identities=14%  Similarity=0.161  Sum_probs=44.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEE--ecccceEEEEEE----------ecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIE--LTFHKYFQVHEW----------FLGNNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~~----------~~~~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      +|++++|.|.........+.|++....  +...........          .........+|.|.+++.+|+|.|.|.+.
T Consensus         8 ~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~   87 (97)
T d2nxyb1           8 KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVE   87 (97)
T ss_dssp             TTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEEEET
T ss_pred             cCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEEEEe
Confidence            699999999977766778999874321  111111100000          00111123469999999999999999987


Q ss_pred             CC
Q psy11826         70 NP   71 (83)
Q Consensus        70 ~~   71 (83)
                      +.
T Consensus        88 ~~   89 (97)
T d2nxyb1          88 DQ   89 (97)
T ss_dssp             TE
T ss_pred             cC
Confidence            64

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.85  E-value=7.6e-09  Score=45.72  Aligned_cols=81  Identities=11%  Similarity=0.109  Sum_probs=47.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccc--------eEEEE-EEecCC--CeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHK--------YFQVH-EWFLGN--NTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~--------~~~~~-~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      +|+++.|.|.........+.|++.........        ..... +...+.  -....+|.|.+++.+|+|.|.|.+.+
T Consensus        13 ~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~v~~   92 (107)
T d1l6za1          13 EDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTD   92 (107)
T ss_dssp             TTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEEEEE
Confidence            68999999984444456789998543221100        00000 000000  00124699999999999999999976


Q ss_pred             CCc-ceeeEEEEe
Q psy11826         71 PFA-IDRRGFRTD   82 (83)
Q Consensus        71 ~~g-~~~~~~~~~   82 (83)
                      ..+ .......|.
T Consensus        93 ~~~~~~~~~v~L~  105 (107)
T d1l6za1          93 ENYRRTQATVRFH  105 (107)
T ss_dssp             TTEEECCCCEEEC
T ss_pred             CCCCEEEEEEEEE
Confidence            654 344445543

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.84  E-value=7.8e-08  Score=41.42  Aligned_cols=69  Identities=12%  Similarity=0.147  Sum_probs=42.7

Q ss_pred             CceEEEEeEeCccCCCeEEEEe--CCEE---ecc-cceEEEE----EEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          3 GRKITFFCMAEGFPRPHITWTK--DDIE---LTF-HKYFQVH----EWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~--~~~~---~~~-~~~~~~~----~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      |+.++|.|.........+.|++  .+..   +.. .......    ............|.|..++.+|+|.|.|-+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            7899999997777777899987  2211   110 0000000    000111222357999999999999999987643

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=4.5e-09  Score=47.14  Aligned_cols=33  Identities=12%  Similarity=0.359  Sum_probs=27.5

Q ss_pred             EEEEEccCCCCCCeEEEEEeeCCCcceeeEEEE
Q psy11826         49 SKMEIDPATQKDAGYYECVADNPFAIDRRGFRT   81 (83)
Q Consensus        49 ~~l~i~~~~~~~~g~y~C~~~~~~g~~~~~~~~   81 (83)
                      .+|.|.+++.+|+|.|.|.+.+..+.....+.|
T Consensus        88 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L  120 (124)
T d1eaja_          88 ASINVTNLQLSDIGTYQCKVKKAPGVANKKIHL  120 (124)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEcccEEccCEEEEEEEEECCCeEEeEEEE
Confidence            469999999999999999999887766555544

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=6.7e-08  Score=42.42  Aligned_cols=75  Identities=15%  Similarity=0.226  Sum_probs=48.4

Q ss_pred             CceEEEEeEeCcc-CCC-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826          3 GRKITFFCMAEGF-PRP-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         3 g~~~~~~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~   77 (83)
                      +..+.|.|.+.++ |.. .+.|.++|..+............+..+...+.|.|..-.......|.|.+.........
T Consensus        21 ~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t~~~   97 (104)
T d1o0va1          21 PPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFED   97 (104)
T ss_dssp             CSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEE
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEeEEe
Confidence            3467899999885 443 57999999888754332222222333445567887765545567799999887554433

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=8.8e-08  Score=41.78  Aligned_cols=69  Identities=12%  Similarity=0.089  Sum_probs=43.9

Q ss_pred             CCceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+...|.|.+.|+.++  .+.|.++|..+............+..+...+.|.+.   .++.+.|.|.+.....
T Consensus        18 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ytC~V~H~sl   88 (100)
T d1k5nb_          18 NGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFT---PTEKDEYACRVNHVTL   88 (100)
T ss_dssp             TTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEC---CCSSCCEEEEEECTTC
T ss_pred             CCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEEC---CCCCCEEEEEEEeCCC
Confidence            36778899999997443  579999998876433222222222233344556554   4556789999987543

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=3.4e-07  Score=39.75  Aligned_cols=67  Identities=13%  Similarity=0.120  Sum_probs=42.9

Q ss_pred             CceEEEEeEeCccCC--CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      |+.++|.|.+.|+.+  ..+.|.++|..+............+......+.|.+.   .++...|+|.+....
T Consensus        18 ~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~---~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          18 GKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFT---PTETDTYACRVKHDS   86 (99)
T ss_dssp             TSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEEC---CCSSCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEec---CcCCCEEEEEEEeCC
Confidence            667889999998643  3689999998876543332222222223344455553   455668999998754

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.70  E-value=5.1e-08  Score=43.41  Aligned_cols=70  Identities=21%  Similarity=0.287  Sum_probs=44.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCC--EEec-------ccceEEE--EEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDD--IELT-------FHKYFQV--HEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~--~~~~-------~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      +|+.++|.|.........+.|++..  ....       .......  ............+|.|..++.+|+|.|.|.+..
T Consensus        14 ~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~Ca~~~   93 (114)
T d2cdea1          14 EGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSD   93 (114)
T ss_dssp             TTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEEEEEEEC
T ss_pred             CCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcccceeeec
Confidence            5889999999876666789999622  1111       0000000  011111223456799999999999999999876


Q ss_pred             C
Q psy11826         71 P   71 (83)
Q Consensus        71 ~   71 (83)
                      .
T Consensus        94 ~   94 (114)
T d2cdea1          94 R   94 (114)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.64  E-value=2.6e-07  Score=41.01  Aligned_cols=67  Identities=13%  Similarity=0.234  Sum_probs=43.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEE--ec----c------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIE--LT----F------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~--~~----~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.+.|.|...+.....+.|++  .+..  ..    .      .......   .........|.|.+++.+|+|.|.|.
T Consensus        14 ~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~i~~~~~~Dsg~YyCa   90 (113)
T d2bnqd1          14 EGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNAS---LDKSSGRSTLYIAASQPGDSATYLCA   90 (113)
T ss_dssp             TTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEE---EETTTTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeee---eccCCCEEEeeeecCCCCCCcEEeEe
Confidence            58999999998776666789997  2221  11    0      0111111   11122345799999999999999998


Q ss_pred             eeCC
Q psy11826         68 ADNP   71 (83)
Q Consensus        68 ~~~~   71 (83)
                      +...
T Consensus        91 ~~~~   94 (113)
T d2bnqd1          91 VRPT   94 (113)
T ss_dssp             EEES
T ss_pred             EecC
Confidence            8643

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.60  E-value=1.1e-06  Score=38.91  Aligned_cols=66  Identities=17%  Similarity=0.294  Sum_probs=42.5

Q ss_pred             CCceEEEEeEeCc--cCCCeEEEEe--CCEE----ecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEG--FPRPHITWTK--DDIE----LTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~--~~~~~~~w~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      +|+.++|.|...+  .....+.|++  .+..    +....+.....  +.. .....|.|.+++.+|++.|.|.+..
T Consensus        14 ~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~--~~~-~~~~~L~I~~l~~~Dsa~YyCa~~~   87 (113)
T d1vesa_          14 TGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETV--NKG-SKSFSLRISDLRVEDSGTYKCQAFY   87 (113)
T ss_dssp             TTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEE--ETT-TTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEEEEECCCcccCCccceeeeeccccceeeeeeccccccee--ECC-CCceeeeecccccCCcceEeeeeec
Confidence            6899999998754  3445789986  2221    11222222221  111 1235799999999999999998753

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.56  E-value=1.6e-06  Score=38.44  Aligned_cols=67  Identities=15%  Similarity=0.288  Sum_probs=42.4

Q ss_pred             CCceEEEEeEeCc--cCCCeEEEEe--CCEE----ecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEG--FPRPHITWTK--DDIE----LTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~--~~~~~~~w~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|+.++|.|...+  .....+.|++  .+..    +..........  +.. .....|.|.+++.+|++.|.|-+...
T Consensus        13 ~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~--~~~-~~~~~L~I~~l~~~Dsa~YyCA~~~~   87 (112)
T d1sq2n_          13 TGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETV--NSG-SKSFSLRINDLTVEDGGTYRCGLGVA   87 (112)
T ss_dssp             TTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEE--ETT-TTEEEEEECSCCGGGCEEEEEEECBT
T ss_pred             CCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEE--ecC-CceeeeEecCCcCccCEEEeEEEecC
Confidence            5889999998754  3456799996  2221    11112222211  111 12357999999999999999977643

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=9.2e-08  Score=43.09  Aligned_cols=69  Identities=17%  Similarity=0.293  Sum_probs=42.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEecc--------cceEEEEEEec-C---------CCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELTF--------HKYFQVHEWFL-G---------NNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~~--------~~~~~~~~~~~-~---------~~~~~~~l~i~~~~~~~~   61 (83)
                      +|++++|.|...+.....+.|++  .+..+..        ........... .         .......|.|.+++.+|+
T Consensus        15 ~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~~~~~~Ds   94 (122)
T d1nezg_          15 LGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENE   94 (122)
T ss_dssp             TTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEESSCCGGGC
T ss_pred             CCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEcccccCCC
Confidence            69999999998777777899986  2222110        00000000000 0         001124699999999999


Q ss_pred             eEEEEEeeC
Q psy11826         62 GYYECVADN   70 (83)
Q Consensus        62 g~y~C~~~~   70 (83)
                      |.|.|.+..
T Consensus        95 g~YyCa~~~  103 (122)
T d1nezg_          95 GYYFCSVIS  103 (122)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEeeEeC
Confidence            999998753

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=5.7e-07  Score=38.68  Aligned_cols=68  Identities=18%  Similarity=0.196  Sum_probs=41.6

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      |+.+.|.|.+.|+.+.  .+.|.++|..+............+......+.+.+   ...+...|.|.+.....
T Consensus        15 ~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~---~~~~~~~ytC~V~H~sl   84 (94)
T d1t7va1          15 GEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAV---PPQDTAPYSCHVQHSSL   84 (94)
T ss_dssp             TSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEE---CTTCCSCEEEEEEETTC
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEe---CCCCCCEEEEEEEECCC
Confidence            6678999999996544  57999999877643322222211112223334444   45566789999986543

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.55  E-value=1.3e-07  Score=41.74  Aligned_cols=68  Identities=16%  Similarity=0.202  Sum_probs=41.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CEEec------ccceEEE---EEEecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DIELT------FHKYFQV---HEWFLGNNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~~~~------~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      +|+.++|.|.........+.|++.  +....      .......   .............|.|.+++.+|++.|.|-+.
T Consensus        13 ~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   91 (110)
T d1u3ha1          13 EGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAS   91 (110)
T ss_dssp             TTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEEECCE
T ss_pred             CCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEeeeec
Confidence            589999999976655567899962  22111      0000000   00001112224579999999999999999765

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.53  E-value=1.1e-06  Score=39.13  Aligned_cols=68  Identities=21%  Similarity=0.488  Sum_probs=42.1

Q ss_pred             CCceEEEEeEeCc-cCCCeEEEEe--CCEEec--c-------------cceEEEEEEecCCCeEEEEEEEccCCCCCCeE
Q psy11826          2 LGRKITFFCMAEG-FPRPHITWTK--DDIELT--F-------------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~~~~w~~--~~~~~~--~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   63 (83)
                      +|+.++|.|.... .....+.|++  .+....  .             ..++.....   .......|.|.+++.+|+|.
T Consensus        14 ~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~---~~~~~~~L~I~~~~~~Dsg~   90 (116)
T d1tvda_          14 SGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHI---LTQKAFHLVISPVRTEDSAT   90 (116)
T ss_dssp             TTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEE---GGGTEEEEEESSCCGGGCEE
T ss_pred             CCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEec---CceeEEeeeecCcccccccc
Confidence            6899999998643 3566799986  222111  0             011111111   11223579999999999999


Q ss_pred             EEEEeeCCC
Q psy11826         64 YECVADNPF   72 (83)
Q Consensus        64 y~C~~~~~~   72 (83)
                      |.|......
T Consensus        91 YyCa~~~~~   99 (116)
T d1tvda_          91 YYCAFTLPP   99 (116)
T ss_dssp             EEEEEECTT
T ss_pred             ceeeEecCC
Confidence            999876543

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=3.1e-07  Score=40.14  Aligned_cols=69  Identities=19%  Similarity=0.179  Sum_probs=41.9

Q ss_pred             CCceEEEEeEeCccC----CCeEEEEeCCEEeccc--ceEEEEE------EecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          2 LGRKITFFCMAEGFP----RPHITWTKDDIELTFH--KYFQVHE------WFLGNNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~----~~~~~w~~~~~~~~~~--~~~~~~~------~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      +|+.+.|.|......    ...+.|.+.+..+...  ......+      .....  ...+|.|.+++.+|+|.|.|.+.
T Consensus         8 ~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~--g~~sL~I~~v~~~D~G~Y~C~V~   85 (105)
T d1dr9a1           8 VKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT--NNLSIVILALRPSDEGTYECVVL   85 (105)
T ss_dssp             TTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEEST--TTTEEEECSCCGGGCEEEEEEEE
T ss_pred             eCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccC--CcEEEEECcCChHHCeEEEEEEE
Confidence            689999999754322    1357888876544211  1111100      00011  12479999999999999999987


Q ss_pred             CCC
Q psy11826         70 NPF   72 (83)
Q Consensus        70 ~~~   72 (83)
                      +..
T Consensus        86 ~~~   88 (105)
T d1dr9a1          86 KYE   88 (105)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            543

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.51  E-value=2.9e-07  Score=40.85  Aligned_cols=71  Identities=20%  Similarity=0.317  Sum_probs=41.8

Q ss_pred             CCceEEEEeEeC-ccCCCeEEEEe--CCEEec-------ccceEEE---EEEecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          2 LGRKITFFCMAE-GFPRPHITWTK--DDIELT-------FHKYFQV---HEWFLGNNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         2 ~g~~~~~~C~~~-~~~~~~~~w~~--~~~~~~-------~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      .|++++|.|... ......+.|++  .+..+.       .......   .............|.|.+++.+|+|.|.|.+
T Consensus        14 ~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~   93 (114)
T d2ak4d1          14 EKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVYFCAL   93 (114)
T ss_dssp             TTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCCCceEeC
Confidence            589999999854 33455688987  222111       0000000   0011111222457999999999999999976


Q ss_pred             eCCC
Q psy11826         69 DNPF   72 (83)
Q Consensus        69 ~~~~   72 (83)
                      ....
T Consensus        94 ~~~~   97 (114)
T d2ak4d1          94 SGFY   97 (114)
T ss_dssp             ECSB
T ss_pred             CCCC
Confidence            6543

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.51  E-value=6.9e-07  Score=39.61  Aligned_cols=70  Identities=19%  Similarity=0.271  Sum_probs=42.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEec---c-cceEEE----EEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELT---F-HKYFQV----HEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~---~-~~~~~~----~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      +|+.++|.|.... ....+.|++  .+..+.   . ......    .............|.|.+++.+|++.|.|.+...
T Consensus        15 ~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   93 (113)
T d1h5ba_          15 EGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFCAAEAS   93 (113)
T ss_dssp             TTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEEEEecCC
Confidence            5899999999754 345789987  222111   0 000000    0111112233457999999999999999987654


Q ss_pred             C
Q psy11826         72 F   72 (83)
Q Consensus        72 ~   72 (83)
                      .
T Consensus        94 ~   94 (113)
T d1h5ba_          94 S   94 (113)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=2.4e-06  Score=37.87  Aligned_cols=67  Identities=22%  Similarity=0.329  Sum_probs=41.9

Q ss_pred             CCceEEEEeEeCcc-CCCeEEEEe--CCEEec---c----------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEE
Q psy11826          2 LGRKITFFCMAEGF-PRPHITWTK--DDIELT---F----------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE   65 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~~~~w~~--~~~~~~---~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   65 (83)
                      +|+.+.|.|..... ....+.|++  .+....   .          ..++...   .........|.|.+++.+|+|.|.
T Consensus        13 ~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~---~~~~~~~~~L~I~~~~~~Dsg~Yy   89 (114)
T d3bp5a1          13 EGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQII---QLPNRHDFHMNILDTRRNDSGIYL   89 (114)
T ss_dssp             TTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEE---ECTTSSEEEEEESSCCGGGCEEEE
T ss_pred             CCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEE---EeCCCCEEEEEECccCcCCCeEEE
Confidence            68999999997543 345688986  222111   0          0111111   111222456999999999999999


Q ss_pred             EEeeCC
Q psy11826         66 CVADNP   71 (83)
Q Consensus        66 C~~~~~   71 (83)
                      |-+...
T Consensus        90 Ca~~~~   95 (114)
T d3bp5a1          90 CGAISL   95 (114)
T ss_dssp             EEEECS
T ss_pred             EEEEeC
Confidence            987653

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=7.6e-07  Score=38.81  Aligned_cols=75  Identities=15%  Similarity=0.172  Sum_probs=47.6

Q ss_pred             CceEEEEeEeCccCC--CeEEEEeCCEEecccceE-EEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcceee
Q psy11826          3 GRKITFFCMAEGFPR--PHITWTKDDIELTFHKYF-QVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDRR   77 (83)
Q Consensus         3 g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~~   77 (83)
                      ++.+.+.|.+.++.+  ..|.|.++|..+...... ......++.+...+.|.+..-.......|.|.+.........
T Consensus        20 ~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~k   97 (102)
T d1q0xl2          20 TAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNK   97 (102)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEE
T ss_pred             CCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCccEee
Confidence            456789999888643  368999999877543211 111111233445667888766656678899999876544433

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.49  E-value=1.4e-06  Score=38.24  Aligned_cols=64  Identities=19%  Similarity=0.316  Sum_probs=41.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEec------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELT------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.........+.|++  .+....            ...++....     ......|.|.+++.+|++.|.|-
T Consensus        15 ~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~-----~~~~~~L~I~~~~~~Dsa~YyCa   89 (106)
T d1i8ka_          15 TGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG-----TGTDFVFTIENTLSEDVGDYYCL   89 (106)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeC-----CCCeeeecccCCccccCEEEeEe
Confidence            68999999987665556789986  232111            011111111     11135799999999999999997


Q ss_pred             eeC
Q psy11826         68 ADN   70 (83)
Q Consensus        68 ~~~   70 (83)
                      ...
T Consensus        90 ~~~   92 (106)
T d1i8ka_          90 QSF   92 (106)
T ss_dssp             ECS
T ss_pred             cCc
Confidence            654

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=8e-07  Score=38.28  Aligned_cols=63  Identities=14%  Similarity=0.199  Sum_probs=41.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|.+++|.|... .......|++++.........      .......+.+.|..++.+|+|.|.|...+.
T Consensus        17 ~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~------~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (95)
T d1olla1          17 KEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPK------PPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (95)
T ss_dssp             TTCCEEEEEECC-TTCCEEEEEETTEEEEEECCS------SCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCcEEEEEecC-CCccEEEEEECCCCcceeEEc------cCCCccEEEEEEeeeecCCCceEEEEeCCC
Confidence            489999999853 334567788887543311100      001112357999999999999999987654

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.49  E-value=2.1e-07  Score=41.05  Aligned_cols=65  Identities=17%  Similarity=0.349  Sum_probs=42.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEec---c---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELT---F---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.........+.|++  .|....   .         ........     ......|.|.+++.+|++.|.|.
T Consensus        15 ~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~l~~~Dsa~YyCa   89 (107)
T d1c5cl1          15 LGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSR-----SGSDYSLTISSLESEDFADYYCL   89 (107)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGGCSEEEEE
T ss_pred             CCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecc-----cCCEEEEEEhhhcccCCeEEEEe
Confidence            68999999997766666799996  332211   0         01111111     01134799999999999999997


Q ss_pred             eeCC
Q psy11826         68 ADNP   71 (83)
Q Consensus        68 ~~~~   71 (83)
                      +...
T Consensus        90 ~~~~   93 (107)
T d1c5cl1          90 QYAS   93 (107)
T ss_dssp             ECSS
T ss_pred             cCcC
Confidence            7653

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.48  E-value=5.2e-08  Score=43.46  Aligned_cols=67  Identities=16%  Similarity=0.268  Sum_probs=42.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CEEec---c---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DIELT---F---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.........+.|++.  +..+.   .         ...+...   .........|.|..++.+|+|.|.|.
T Consensus        15 ~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~I~~~~~~Dsg~YyCa   91 (115)
T d1lp9e1          15 EGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHAT---LHKSSSSFHLQKSSAQLSDSALYYCA   91 (115)
T ss_dssp             TTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEEC---CBGGGTBCCEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeee---ccCCCCeEEeeccccccccCccceEE
Confidence            589999999977666778999872  22111   0         0111110   01111234599999999999999998


Q ss_pred             eeCC
Q psy11826         68 ADNP   71 (83)
Q Consensus        68 ~~~~   71 (83)
                      +...
T Consensus        92 ~~~~   95 (115)
T d1lp9e1          92 LFLA   95 (115)
T ss_dssp             EEEC
T ss_pred             EEcC
Confidence            7543

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.48  E-value=1e-06  Score=38.71  Aligned_cols=64  Identities=17%  Similarity=0.303  Sum_probs=41.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEec------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELT------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|++++|.|.........+.|++  .+..+.            ...++....  .   .....|.|.+++.+|++.|.|-
T Consensus        15 ~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~--~---~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d1j1pl_          15 PGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG--S---GTDFTLSINSVETEDFGMYFCQ   89 (107)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--E---TTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecc--c---CCEEEEEEcccCcCCCEEEEEE
Confidence            68999999997665566799986  222111            011221111  1   1135799999999999999997


Q ss_pred             eeC
Q psy11826         68 ADN   70 (83)
Q Consensus        68 ~~~   70 (83)
                      ..+
T Consensus        90 ~~~   92 (107)
T d1j1pl_          90 QAN   92 (107)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            654

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.47  E-value=1e-06  Score=38.70  Aligned_cols=65  Identities=22%  Similarity=0.305  Sum_probs=42.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CE--Eecc----------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DI--ELTF----------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~--~~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.........+.|++.  |.  .+..          ...+....     ......|.|.+++.+|++.|.|-
T Consensus        14 ~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----s~~~~~L~I~~~~~~DsA~YyCa   88 (106)
T d1a0ql1          14 LGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSG-----SGRDYSFSISNLEPEDIATYYCL   88 (106)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEECSCCGGGCSEEEEE
T ss_pred             CCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeec-----CCCEeeeEehhhcccCCEeEEEE
Confidence            689999999976666667999872  21  1110          11111110     11235799999999999999998


Q ss_pred             eeCC
Q psy11826         68 ADNP   71 (83)
Q Consensus        68 ~~~~   71 (83)
                      +...
T Consensus        89 ~~~~   92 (106)
T d1a0ql1          89 QYYN   92 (106)
T ss_dssp             ECSS
T ss_pred             EeCC
Confidence            7643

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.47  E-value=4.6e-07  Score=40.05  Aligned_cols=66  Identities=23%  Similarity=0.241  Sum_probs=43.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEec------cc------ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELT------FH------KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~------~~------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.........+.|++  .+....      ..      .+....   .........|.|..++.+|++.|.|-
T Consensus        14 ~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~I~~~~~~Dsa~YyCa   90 (111)
T d1bd2d1          14 EGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVF---LNKSAKHLSLHIVPSQPGDSAVYFCA   90 (111)
T ss_dssp             TTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEE---EETTTTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEE---EEccCCEEEEEECCCcccccEEEEee
Confidence            68999999987766666789987  232111      00      111111   11122356899999999999999998


Q ss_pred             eeC
Q psy11826         68 ADN   70 (83)
Q Consensus        68 ~~~   70 (83)
                      +..
T Consensus        91 ~~~   93 (111)
T d1bd2d1          91 AME   93 (111)
T ss_dssp             EES
T ss_pred             ccC
Confidence            764

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.8e-06  Score=37.18  Aligned_cols=68  Identities=18%  Similarity=0.307  Sum_probs=41.4

Q ss_pred             CCCceEEEEeEeCcc--CCCeEEEEeCC--EE---ec---c------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEE
Q psy11826          1 MLGRKITFFCMAEGF--PRPHITWTKDD--IE---LT---F------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY   64 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~--~~~~~~w~~~~--~~---~~---~------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y   64 (83)
                      .+|+.++|.|.....  ....+.|++..  ..   +.   .      ..+.....   ........|.|.+++.+|+|.|
T Consensus         9 ~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~l~~~DsG~Y   85 (108)
T d1hkfa_           9 VAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWD---DPDAGFFTVTMTDLREEDSGHY   85 (108)
T ss_dssp             CTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEE---ETTTTEEEEEECSCCGGGCEEE
T ss_pred             cCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeee---eCCCCEEEEEEhhhCCCCCEEE
Confidence            369999999985433  23457898621  11   10   0      01122111   1122346799999999999999


Q ss_pred             EEEeeCC
Q psy11826         65 ECVADNP   71 (83)
Q Consensus        65 ~C~~~~~   71 (83)
                      .|.+...
T Consensus        86 ~C~v~~~   92 (108)
T d1hkfa_          86 WCRIYRP   92 (108)
T ss_dssp             EEEEECT
T ss_pred             EEEEecC
Confidence            9988643

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.47  E-value=4.2e-07  Score=40.39  Aligned_cols=70  Identities=13%  Similarity=0.250  Sum_probs=41.7

Q ss_pred             CCCceEEEEeEeCcc-CCCeEEEEeC-----CEEecc-----cceEEEE---------EEecCCCeEEEEEEEccCCCCC
Q psy11826          1 MLGRKITFFCMAEGF-PRPHITWTKD-----DIELTF-----HKYFQVH---------EWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~-~~~~~~w~~~-----~~~~~~-----~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      ..|+.+.|.|...+. ....+.|++.     +..+..     .......         ............|.|.+++.+|
T Consensus        11 ~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D   90 (115)
T d2atpb1          11 QTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVKPED   90 (115)
T ss_dssp             CTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSCCGGG
T ss_pred             cCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeecccCCCC
Confidence            368999999997663 4457899863     221110     0000000         0001112223469999999999


Q ss_pred             CeEEEEEeeC
Q psy11826         61 AGYYECVADN   70 (83)
Q Consensus        61 ~g~y~C~~~~   70 (83)
                      +|.|.|....
T Consensus        91 sg~Y~Ca~~~  100 (115)
T d2atpb1          91 SDFYFCATVG  100 (115)
T ss_dssp             CEEEEEEEEC
T ss_pred             CcEEEEeEcC
Confidence            9999998764

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.47  E-value=3.1e-07  Score=40.57  Aligned_cols=69  Identities=14%  Similarity=0.275  Sum_probs=41.7

Q ss_pred             CCceEEEEeEeCcc-CCCeEEEEe--CCEEec---c---cc-eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGF-PRPHITWTK--DDIELT---F---HK-YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~~~~w~~--~~~~~~---~---~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      +|+.++|.|..... ....+.|++  .+....   .   .. .................|.|.+++.+|++.|.|.+..
T Consensus        12 ~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   90 (110)
T d2esvd1          12 EGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYCIVVR   90 (110)
T ss_dssp             TTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEEEEEeC
Confidence            58999999986543 345689997  222111   0   00 0000011112233456799999999999999998753

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.8e-06  Score=38.18  Aligned_cols=68  Identities=15%  Similarity=0.229  Sum_probs=40.4

Q ss_pred             CCceEEEEeEeCcc---CCCeEEEEeCCE--E---ec---------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEE
Q psy11826          2 LGRKITFFCMAEGF---PRPHITWTKDDI--E---LT---------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY   64 (83)
Q Consensus         2 ~g~~~~~~C~~~~~---~~~~~~w~~~~~--~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y   64 (83)
                      +|+.++|.|.....   ....+.|++...  .   +.         ...+..+..   ........|.|.+++.+|+|.|
T Consensus        13 ~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~I~~l~~~DsG~Y   89 (116)
T d1xeda_          13 EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN---FPENGTFVVNIAQLSQDDSGRY   89 (116)
T ss_dssp             TTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEE---ETTTTEEEEEECSCCGGGCEEE
T ss_pred             CCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEee---eCCCCEEEEEEhhhCcCCCEEE
Confidence            68999999985432   223577876321  1   10         011122221   1122245799999999999999


Q ss_pred             EEEeeCCC
Q psy11826         65 ECVADNPF   72 (83)
Q Consensus        65 ~C~~~~~~   72 (83)
                      .|.+....
T Consensus        90 ~C~v~~~~   97 (116)
T d1xeda_          90 KCGLGINS   97 (116)
T ss_dssp             EEEESCGG
T ss_pred             EEEEEcCC
Confidence            99886443

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.47  E-value=2.5e-07  Score=41.12  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=20.4

Q ss_pred             EEEEEccCCCCCCeEEEEEeeCCC
Q psy11826         49 SKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus        49 ~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .+|.|.+++.+|+|.|.|.+.+..
T Consensus        81 ~sL~I~~v~~~DsG~Y~C~v~~~~  104 (119)
T d1neua_          81 GSIVIHNLDYSDNGTFTCDVKNPP  104 (119)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEC--
T ss_pred             EEEEECCCChHHCEEEEEEEEECC
Confidence            469999999999999999998754

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.46  E-value=6.9e-07  Score=39.53  Aligned_cols=69  Identities=14%  Similarity=0.229  Sum_probs=41.9

Q ss_pred             CCceEEEEeEeCccC-CCeEEEEe--CCEEec---c----cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFP-RPHITWTK--DDIELT---F----HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~-~~~~~w~~--~~~~~~---~----~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      +|+.++|.|...+.. ...+.|++  .+..+.   .    ...................|.|..+..+|++.|.|.+..
T Consensus        12 ~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   90 (112)
T d1kgcd1          12 EEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYCILPL   90 (112)
T ss_dssp             TTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEEECCC
T ss_pred             CCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEeeeEec
Confidence            689999999976544 34689997  232211   0    000000111122223345799999999999999997653

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.45  E-value=3.2e-06  Score=36.93  Aligned_cols=69  Identities=13%  Similarity=0.247  Sum_probs=44.6

Q ss_pred             CCceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+..+|.|.+.++.++  .|.|.++|..+............+..+...+.|.+..   ++...|.|.+....-
T Consensus        17 ~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~~l   87 (103)
T d1hdma1          17 FGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTP---EPSDIFSCIVTHEPD   87 (103)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECC---CTTCCEEEEEEETTT
T ss_pred             cCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEec---CCCCEEEEEEEeCCC
Confidence            46777899999986544  5799999987765443333333233344555666643   445579999987643

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=3e-07  Score=40.08  Aligned_cols=70  Identities=16%  Similarity=0.208  Sum_probs=44.6

Q ss_pred             CceEEEEeEeCcc-CC-CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGF-PR-PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .+.+.+.|.+.++ |. ..+.|.++|...............++.+...+.|.+..-.......|.|.+....
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            4568899999886 43 3689999998765432211112222334456678776655455678999998753

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.7e-07  Score=40.66  Aligned_cols=67  Identities=15%  Similarity=0.019  Sum_probs=40.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|++++|.|... .+.....|++++...........    .......+.+.|..++.+|+|.|.|...+...
T Consensus        20 ~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~----~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~   86 (99)
T d1ucta1          20 LDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRL----KFWNETDPEFVIDHMDANKAGRYQCQYRIGHY   86 (99)
T ss_dssp             TTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEEC----C----CCCEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             CCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccc----cCCCCceEEEEecCCCHHHCceEEEEEECCCc
Confidence            488999999853 44556778775532111100000    00011124688999999999999999876543

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.44  E-value=3.7e-06  Score=37.47  Aligned_cols=66  Identities=18%  Similarity=0.362  Sum_probs=42.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEecc-------c----------ceEEEEEEecCCCeEEEEEEEccCCCCCCe
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELTF-------H----------KYFQVHEWFLGNNTIKSKMEIDPATQKDAG   62 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~~-------~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   62 (83)
                      .|+.++|.|...+.....+.|++  .+..+..       .          ..+...    ........|.|..++.+|++
T Consensus        15 ~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~----~~~~~~~~L~i~~~~~~Dsa   90 (118)
T d2ij0c1          15 SGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLIN----HASPTLSTLTVTSAHPEDSG   90 (118)
T ss_dssp             TTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEE----ECSSSEEEEEECSCCGGGCE
T ss_pred             CCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceee----ccccccccccccccccccCc
Confidence            68999999997776667899997  2221110       0          011110    01122357999999999999


Q ss_pred             EEEEEeeCC
Q psy11826         63 YYECVADNP   71 (83)
Q Consensus        63 ~y~C~~~~~   71 (83)
                      .|.|-+...
T Consensus        91 ~YyCa~~~~   99 (118)
T d2ij0c1          91 FYVCSALAG   99 (118)
T ss_dssp             EEEEEEECS
T ss_pred             eEEEEEecC
Confidence            999987643

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=98.44  E-value=3.4e-07  Score=39.95  Aligned_cols=71  Identities=17%  Similarity=0.197  Sum_probs=44.1

Q ss_pred             CCceEEEEeEeCccCC--CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          2 LGRKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .++.+.+.|.+.++.+  ..+.|.++|...............++.+...+.|.+..-.......|.|.+....
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            3567899999988543  3689999997654322111111112233455678776655455667999998754

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=1.7e-06  Score=36.40  Aligned_cols=72  Identities=19%  Similarity=0.355  Sum_probs=47.1

Q ss_pred             CCceEEEEeEeCc-cCCCeEEEEe-CCE---Eeccc-ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          2 LGRKITFFCMAEG-FPRPHITWTK-DDI---ELTFH-KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~~~~w~~-~~~---~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .|+.+.+.|.+.- ...|.++|-+ ++.   .+... .....+..  ........|-+..+..+|.|.|+|.++...+..
T Consensus        17 ~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e--~~nis~FvLhF~pvl~sDnGsYrCSanf~s~vi   94 (104)
T d1xaua_          17 TGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEE--NRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVI   94 (104)
T ss_dssp             TTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEEC--SSSSCEEEEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             cCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhh--cCCeeEEEEEeeeeeecCCCceEEecCCChhhe
Confidence            5889999999754 4567899976 442   22222 22222221  222334578899999999999999998665543

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.43  E-value=7.4e-07  Score=39.21  Aligned_cols=64  Identities=17%  Similarity=0.264  Sum_probs=42.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEec------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELT------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.........+.|++  .+..+.            ...++...     .......|.|.+++.+|++.|.|-
T Consensus        15 ~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~-----~~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d1ospl1          15 LGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGS-----DSGKDYTLSITSLQTEDVATYFCQ   89 (107)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE-----CSSSSEEEEESSCCGGGCSEEEEE
T ss_pred             CCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCcccccccee-----cCCCeEEeEEcccccccCCcEEEe
Confidence            69999999997665555799997  222111            01122211     112235799999999999999997


Q ss_pred             eeC
Q psy11826         68 ADN   70 (83)
Q Consensus        68 ~~~   70 (83)
                      +..
T Consensus        90 ~~~   92 (107)
T d1ospl1          90 QYW   92 (107)
T ss_dssp             ECS
T ss_pred             ecc
Confidence            764

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=8.9e-07  Score=38.80  Aligned_cols=71  Identities=17%  Similarity=0.243  Sum_probs=46.4

Q ss_pred             CceEEEEeEeCccCC--CeEEEEeCCEEecccceEEE--EEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQV--HEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      ++.++|.|.+.++.+  ..+.|.++|..+........  ....++.+...+.|.+..-.......|.|.+.....
T Consensus        19 ~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          19 RDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             SCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTS
T ss_pred             CCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCC
Confidence            567899999888543  47899999988765432111  111122344556788876665666789999987544

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=3.5e-07  Score=39.87  Aligned_cols=70  Identities=14%  Similarity=0.224  Sum_probs=44.5

Q ss_pred             CceEEEEeEeCccCC--CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      ++.+.+.|.+.++.+  ..+.|.++|...............++.+...+.|.+..-.......|.|.+....
T Consensus        19 ~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          19 KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            567889999988643  3689999998655422111111122334456678877655455567999998754

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.6e-06  Score=36.60  Aligned_cols=67  Identities=18%  Similarity=0.254  Sum_probs=41.2

Q ss_pred             CceEEEEeEeCcc-CC-CeEEEEeCCEEecccc--eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGF-PR-PHITWTKDDIELTFHK--YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~-~~-~~~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      +..++|.|.+.++ |. ..+.|.++|..+....  ........+......+.|.+.   ..+...|.|.+....
T Consensus        15 ~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~---~~~~~~ytC~V~H~s   85 (94)
T d1de4a1          15 SSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVP---PGEEQRYTCQVEHPG   85 (94)
T ss_dssp             SSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEEC---TTCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEEC---CCCCCEEEEEEEeCC
Confidence            4567899999986 43 3689999998875432  122222222233334455543   345667999998753

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.41  E-value=2.2e-06  Score=37.32  Aligned_cols=68  Identities=16%  Similarity=0.210  Sum_probs=41.9

Q ss_pred             CCceEEEEeEeCccCC--CeEEEEeCCEEecccce-EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          2 LGRKITFFCMAEGFPR--PHITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .|+..+|.|.+.++.+  ..|.|.++|..+..... .......+..+...+.|.+..   .+...|+|.+....
T Consensus        18 ~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   88 (101)
T d1fnga1          18 LGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDDFYDCEVDHWG   88 (101)
T ss_dssp             TTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTCCEEEEEECTT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCCEEEEEEEECC
Confidence            3566789999998643  36899999988764321 111122222334555666654   34457999998754

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=3.3e-06  Score=36.93  Aligned_cols=76  Identities=11%  Similarity=0.103  Sum_probs=45.2

Q ss_pred             ceEEEEeEeCccCC--CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCC--CCeEEEEEeeCCCcceeeEE
Q psy11826          4 RKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQK--DAGYYECVADNPFAIDRRGF   79 (83)
Q Consensus         4 ~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~--~~g~y~C~~~~~~g~~~~~~   79 (83)
                      +.+.+.|.+.++.+  ..+.|.+++...............++.+...+.|.+......  ....|.|.+....+.....+
T Consensus        22 ~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~~~~v  101 (105)
T d1dn0b2          22 SSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNV  101 (105)
T ss_dssp             CSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEE
T ss_pred             CceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCEEeEE
Confidence            55789999988543  468999988654432111111112233444567777665533  23579999998776655544

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.41  E-value=4.7e-07  Score=39.80  Aligned_cols=64  Identities=16%  Similarity=0.281  Sum_probs=41.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CEEec------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DIELT------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.........+.|++.  +....            ....+....     ......|.|.+++.+|++.|.|-
T Consensus        15 ~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~l~~~DSa~YyCa   89 (107)
T d1kcvl1          15 VGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSG-----SATDFTLTISSVQADDDADYYCG   89 (107)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeec-----cCCeeecEEHhheecCCceEEEE
Confidence            589999999977666667999962  22111            011111111     11235799999999999999998


Q ss_pred             eeC
Q psy11826         68 ADN   70 (83)
Q Consensus        68 ~~~   70 (83)
                      +..
T Consensus        90 ~~~   92 (107)
T d1kcvl1          90 QSY   92 (107)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            654

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=3.1e-07  Score=40.49  Aligned_cols=71  Identities=17%  Similarity=0.211  Sum_probs=41.9

Q ss_pred             CCceEEEEeEeCc-cCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          2 LGRKITFFCMAEG-FPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .|+.+++.|.+.+ .|.+  .+.|++++..+........ ..........+.|.+......+...|.|.+.+..+
T Consensus        15 ~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~-~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~   88 (109)
T d1vcaa1          15 AGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLED-ADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHID   88 (109)
T ss_dssp             TTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSC-CSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSC
T ss_pred             CCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccc-cccCCcceeeEEEEccCChHHCCcEEEEEEEcCcC
Confidence            6899999999765 6644  5889998876543211000 00011122345566654444445679999987654

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.41  E-value=4.7e-06  Score=36.66  Aligned_cols=65  Identities=18%  Similarity=0.302  Sum_probs=41.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEec---c---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELT---F---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.++|.|.........+.|++  .+....   .         ......     ........|.|.+++.+|++.|.|-
T Consensus        15 ~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~L~i~~l~~~Dsa~YyCA   89 (108)
T d1jhll_          15 PGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSG-----SGSGTDFTLTISSLEPEDFAMYICQ   89 (108)
T ss_dssp             TTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE-----EESSSEEEEEECSCCTTCCSEEEEE
T ss_pred             CCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccc-----cCCCCEEEeEeeeeEeccceEEEEe
Confidence            58999999997665566799986  222110   0         001110     1112245799999999999999997


Q ss_pred             eeCC
Q psy11826         68 ADNP   71 (83)
Q Consensus        68 ~~~~   71 (83)
                      ..+.
T Consensus        90 ~~~~   93 (108)
T d1jhll_          90 QHNE   93 (108)
T ss_dssp             ECSS
T ss_pred             eCCC
Confidence            6653

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=98.40  E-value=6.4e-07  Score=38.69  Aligned_cols=67  Identities=12%  Similarity=0.260  Sum_probs=42.4

Q ss_pred             CceEEEEeEeCccCC-C-eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGFPR-P-HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~~~-~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      ++.+.|.|.+.|+.+ . .+.|.+++...............++.+...+.|.+..   ++...|.|.+....
T Consensus        16 ~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   84 (96)
T d2h26a1          16 PGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHSS   84 (96)
T ss_dssp             TTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEGG
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeCC
Confidence            357899999988644 3 5799999887654332222222233344556677664   34457999998754

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.40  E-value=2.3e-06  Score=37.47  Aligned_cols=63  Identities=22%  Similarity=0.401  Sum_probs=41.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CE---Eecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DI---ELTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~---~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.........+.|++.  +.   .+..         ..++....     ......|.|.+++.+|++.|.|-
T Consensus        14 ~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~-----~~~~~~L~I~~~~~~Dsa~YyCa   88 (106)
T d1lk3l1          14 PGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG-----SGTDFTLTIDPVEADDTAIYFCQ   88 (106)
T ss_dssp             TTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeec-----CCCEEEeEECCcChhhCCCcccc
Confidence            689999999987666667999862  21   1110         11111111     11135799999999999999996


Q ss_pred             ee
Q psy11826         68 AD   69 (83)
Q Consensus        68 ~~   69 (83)
                      ..
T Consensus        89 ~~   90 (106)
T d1lk3l1          89 QS   90 (106)
T ss_dssp             EC
T ss_pred             cc
Confidence            54

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=98.40  E-value=1.2e-06  Score=39.15  Aligned_cols=70  Identities=13%  Similarity=0.200  Sum_probs=44.3

Q ss_pred             CceEEEEeEeCcc-C---CCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGF-P---RPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~-~---~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      ++.+.+.|.+.++ |   ...+.|.+++..+............+..+...+.|.|..-.......|.|.+....
T Consensus        32 ~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          32 SLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             TSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTT
T ss_pred             CCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECC
Confidence            5678899999885 3   24688999998776432222222223334455667765544445677999998754

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.40  E-value=2e-06  Score=37.38  Aligned_cols=68  Identities=18%  Similarity=0.205  Sum_probs=41.7

Q ss_pred             CCceEEEEeEeCccCC--CeEEEEeCCEEecccceEE-EEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          2 LGRKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQ-VHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .|+..+|.|.+.++.+  ..+.|.++|..+....... .....+..+...+.|.+.   .++...|.|.+....
T Consensus        16 ~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~---~~~~~~ytC~V~H~s   86 (100)
T d1muja1          16 LGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI---PSDDDIYDCKVEHWG   86 (100)
T ss_dssp             TTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEEC---CCTTCCEEEEEECTT
T ss_pred             cCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEc---CCCCCEEEEEEEECC
Confidence            4677889999999744  4689999997775432111 111111223344555554   345667999998754

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.40  E-value=2.9e-06  Score=36.79  Aligned_cols=68  Identities=18%  Similarity=0.191  Sum_probs=41.9

Q ss_pred             CCceEEEEeEeCccCC--CeEEEEeCCEEecccce-EEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          2 LGRKITFFCMAEGFPR--PHITWTKDDIELTFHKY-FQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .|+...+.|.+.++.+  ..|.|.++|..+..... .......++.....+.|.+..   ++...|.|.+....
T Consensus        18 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~s   88 (99)
T d1uvqa1          18 LGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLP---SADEIYDCKVEHWG   88 (99)
T ss_dssp             TTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECC---CTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcC---CCCCEEEEEEEeCC
Confidence            3567789999998754  35899999988764321 111122222333445565543   45567999998754

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.39  E-value=9e-07  Score=39.31  Aligned_cols=70  Identities=16%  Similarity=0.166  Sum_probs=42.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEE---ec---ccceEEE----EEEecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIE---LT---FHKYFQV----HEWFLGNNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~---~~---~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      .|+.++|.|.........+.|++  .+..   +.   .......    .............|.|.+++.+|+|.|.|-+.
T Consensus        14 ~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   93 (115)
T d1j8hd1          14 EGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAEYFCAVS   93 (115)
T ss_dssp             TTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCccceeeec
Confidence            58999999997665566799997  2221   11   0000000    00000111112369999999999999999886


Q ss_pred             CC
Q psy11826         70 NP   71 (83)
Q Consensus        70 ~~   71 (83)
                      ..
T Consensus        94 ~~   95 (115)
T d1j8hd1          94 ES   95 (115)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.38  E-value=7.7e-07  Score=38.83  Aligned_cols=64  Identities=17%  Similarity=0.327  Sum_probs=41.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEec---c---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELT---F---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.........+.|++  .+....   .         ........     ......|.|.+++.+|++.|.|-
T Consensus        12 ~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~l~~~Dsa~YyCA   86 (103)
T d8faba1          12 PGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSST-----SGTTVTLTISGVQAEDEADYYCQ   86 (103)
T ss_dssp             TTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-----ETTEEEEEETTCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECC-----CCCccCceEcCcchhHCceEEee
Confidence            68999999987665556789986  222111   0         01111111     11135799999999999999997


Q ss_pred             eeC
Q psy11826         68 ADN   70 (83)
Q Consensus        68 ~~~   70 (83)
                      +..
T Consensus        87 ~~~   89 (103)
T d8faba1          87 AWD   89 (103)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            654

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.37  E-value=3.1e-06  Score=37.15  Aligned_cols=65  Identities=17%  Similarity=0.244  Sum_probs=42.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEec------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELT------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.........+.|++  .|..+.            ...++....     ......|.|..++.+|++.|.|.
T Consensus        15 ~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~L~I~~l~~~DsA~YyCa   89 (107)
T d1tjgl1          15 VGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSG-----SGTEFTLTISTLRPEDFATYYCQ   89 (107)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGGCSEEEEE
T ss_pred             CCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEec-----cCCEEEEEeccceeCcCceEEEE
Confidence            68999999997665567889987  222111            011111110     11235799999999999999997


Q ss_pred             eeCC
Q psy11826         68 ADNP   71 (83)
Q Consensus        68 ~~~~   71 (83)
                      ....
T Consensus        90 ~~~~   93 (107)
T d1tjgl1          90 QLHF   93 (107)
T ss_dssp             ECSB
T ss_pred             ECcC
Confidence            6643

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=3.5e-07  Score=39.91  Aligned_cols=74  Identities=15%  Similarity=0.216  Sum_probs=45.8

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceE-EEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYF-QVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      ++.+.+.|.+.++.+.  .+.|.++|..+...... ......++.+...+.|.+..........|.|.+........
T Consensus        20 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~   96 (102)
T d1rzfl2          20 ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE   96 (102)
T ss_dssp             TTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETTEEEE
T ss_pred             CCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECCccEE
Confidence            4568899999886443  58999999877643211 11111122344556777766554445679999987654433

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.37  E-value=6.4e-07  Score=39.81  Aligned_cols=68  Identities=15%  Similarity=0.151  Sum_probs=40.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEE---ecc--cceEEEE-----EEecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIE---LTF--HKYFQVH-----EWFLGNNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~---~~~--~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      +|+.++|.|.........+.|++  .+..   +..  .......     ............|.|.+++.+|+|.|.|.+.
T Consensus        14 ~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~   93 (115)
T d1i9ea_          14 EGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVS   93 (115)
T ss_dssp             TTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccceeccccc
Confidence            58999999997655566788986  2221   110  0000000     0001111123469999999999999999765

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.36  E-value=4.6e-07  Score=39.51  Aligned_cols=70  Identities=16%  Similarity=0.190  Sum_probs=44.3

Q ss_pred             CceEEEEeEeCccCC--CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .+.+.+.|.+.++.+  ..+.|.++|...............++.+...+.|.+..........|.|.+....
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            456889999988654  3689999998665322111111122333455668877655555667999998753

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.36  E-value=1.1e-06  Score=38.62  Aligned_cols=65  Identities=20%  Similarity=0.383  Sum_probs=42.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEE---ecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIE---LTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~---~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.........+.|++  .+..   +..         ..++....     ......|.|..++.+|++.|.|-
T Consensus        15 ~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~-----~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d1d5il1          15 LGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSG-----SGQDYSLTISSLEYEDMGIYYCL   89 (107)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecc-----cCCEEEccccccCCcCCEEEEee
Confidence            68999999997666666788986  2221   110         01111111     11135799999999999999997


Q ss_pred             eeCC
Q psy11826         68 ADNP   71 (83)
Q Consensus        68 ~~~~   71 (83)
                      ....
T Consensus        90 ~~~~   93 (107)
T d1d5il1          90 QYDE   93 (107)
T ss_dssp             ECSS
T ss_pred             eccC
Confidence            6653

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.36  E-value=1.3e-06  Score=38.44  Aligned_cols=64  Identities=17%  Similarity=0.314  Sum_probs=41.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEe---cc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIEL---TF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~---~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.........+.|++  .+...   ..         ..++....  .   .....|.|.+++.+|++.|.|-
T Consensus        15 ~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~--~---~~~~~L~I~~~~~~DsA~YyCa   89 (107)
T d1mexl1          15 LGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSG--S---GTDFTLTINNVQSEDLAEYFCQ   89 (107)
T ss_dssp             TTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--E---TTEEEEEESSCCGGGCSEEEEE
T ss_pred             CCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecC--C---CCeeeeeechhheecceeEEEe
Confidence            58999999987655556799996  22211   10         11121111  1   1135699999999999999997


Q ss_pred             eeC
Q psy11826         68 ADN   70 (83)
Q Consensus        68 ~~~   70 (83)
                      +..
T Consensus        90 ~~~   92 (107)
T d1mexl1          90 QYN   92 (107)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            654

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=2.7e-07  Score=39.92  Aligned_cols=60  Identities=17%  Similarity=0.294  Sum_probs=40.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      .|.+++|.|...........|+++|.........       .  ...+.+.|..++.+|+|.|.|.-..
T Consensus        18 ~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~-------~--~~~a~F~l~~v~~~~~G~Y~C~y~~   77 (96)
T d1ucta2          18 PGENISLTCSSAHIPFDRFSLAKEGELSLPQHQS-------G--EHPANFSLGPVDLNVSGIYRCYGWY   77 (96)
T ss_dssp             TTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEE-------C--SSSEEEECCSCCGGGCEEEEEEEEC
T ss_pred             CCCeEEEEEeCCCCCceEEEEEECCcccceEEcC-------C--CcccEEEEeccccccCcEEEEEEEc
Confidence            5889999998533344467788888543322110       0  0125688999999999999998654

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.34  E-value=3.1e-06  Score=37.07  Aligned_cols=64  Identities=19%  Similarity=0.284  Sum_probs=41.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CEE---ec---------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DIE---LT---------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.........+.|++.  +..   +.         ...++....     ......|.|.+++.+|++.|.|-
T Consensus        14 ~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~-----~~~~~~L~I~~~~~~Dsa~YyCa   88 (106)
T d1op3k1          14 VGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSG-----SGTEFTLTISGLQFDDFATYHCQ   88 (106)
T ss_dssp             TTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-----ETTEEEEEEESCCGGGCSEEEEE
T ss_pred             CCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeec-----cCCEEEEEEccccccCCCcEeee
Confidence            689999999977666667899862  221   11         011222111     11134699999999999999997


Q ss_pred             eeC
Q psy11826         68 ADN   70 (83)
Q Consensus        68 ~~~   70 (83)
                      +..
T Consensus        89 ~~~   91 (106)
T d1op3k1          89 HYA   91 (106)
T ss_dssp             EEC
T ss_pred             eCC
Confidence            654

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=4.5e-06  Score=36.96  Aligned_cols=64  Identities=20%  Similarity=0.363  Sum_probs=40.2

Q ss_pred             CCceEEEEeEeCcc-CCCeEEEEeCC--EEec--------c----------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGF-PRPHITWTKDD--IELT--------F----------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~~~~w~~~~--~~~~--------~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      +|++++|.|..... ....+.|++..  ....        .          ..++....  ..   ....|.|.+++.+|
T Consensus        14 ~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~--~~---~~~~L~I~~l~~~D   88 (114)
T d1akjd_          14 LGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKR--LG---DTFVLTLSDFRREN   88 (114)
T ss_dssp             TTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEE--ET---TEEEEEESSCCGGG
T ss_pred             CCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEEC--CC---CChhcEEccCCCCC
Confidence            69999999987543 34568998721  1100        0          00111111  11   13469999999999


Q ss_pred             CeEEEEEeeC
Q psy11826         61 AGYYECVADN   70 (83)
Q Consensus        61 ~g~y~C~~~~   70 (83)
                      +|.|.|-+..
T Consensus        89 sg~YyCa~~~   98 (114)
T d1akjd_          89 EGYYFCSALS   98 (114)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEeEeEcC
Confidence            9999998764

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.34  E-value=5.5e-06  Score=36.64  Aligned_cols=67  Identities=15%  Similarity=0.197  Sum_probs=41.5

Q ss_pred             CCceEEEEeEeCc-cCCCeEEEEe--CCEEec--------cc-----ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEE
Q psy11826          2 LGRKITFFCMAEG-FPRPHITWTK--DDIELT--------FH-----KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE   65 (83)
Q Consensus         2 ~g~~~~~~C~~~~-~~~~~~~w~~--~~~~~~--------~~-----~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   65 (83)
                      +|+.++|.|.... .....+.|++  .+..+.        ..     .+.....   ........|.|.+++.+|++.|.
T Consensus        13 ~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~I~~~~~~Dsa~Yy   89 (115)
T d1fo0a_          13 EKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNF---QKPKSSIGLIITATQIEDSAVYF   89 (115)
T ss_dssp             TTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEE---EGGGTEEEEEECSCCGGGCEEEE
T ss_pred             CCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEE---eccCCEEEEEECCCCcccccccc
Confidence            6899999998653 4445689987  222111        00     1111111   11122457999999999999999


Q ss_pred             EEeeCC
Q psy11826         66 CVADNP   71 (83)
Q Consensus        66 C~~~~~   71 (83)
                      |.+...
T Consensus        90 Ca~~~~   95 (115)
T d1fo0a_          90 CAMRGD   95 (115)
T ss_dssp             EEEECC
T ss_pred             ceeecC
Confidence            987654

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=4e-06  Score=37.01  Aligned_cols=67  Identities=16%  Similarity=0.248  Sum_probs=41.4

Q ss_pred             CCceEEEEeEeCc--cCCCeEEEEeC--CEE---ecc----c--------ceEEEEEEecCCCeEEEEEEEccCCCCCCe
Q psy11826          2 LGRKITFFCMAEG--FPRPHITWTKD--DIE---LTF----H--------KYFQVHEWFLGNNTIKSKMEIDPATQKDAG   62 (83)
Q Consensus         2 ~g~~~~~~C~~~~--~~~~~~~w~~~--~~~---~~~----~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   62 (83)
                      .|+++++.|...+  .....+.|++.  +..   +..    .        .++.+.   .........|.|.+++.+|+|
T Consensus        13 eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~~Lti~~l~~~Dsg   89 (113)
T d1smoa_          13 EGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILE---DYHDHGLLRVRMVNLQVEDSG   89 (113)
T ss_dssp             TTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEE---EETTTTEEEEEECSCCGGGCE
T ss_pred             cCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEE---EECCCCEEEEEEccCCcccCc
Confidence            6999999998653  34557889862  211   110    0        011111   111222357999999999999


Q ss_pred             EEEEEeeCC
Q psy11826         63 YYECVADNP   71 (83)
Q Consensus        63 ~y~C~~~~~   71 (83)
                      .|.|.+...
T Consensus        90 ~Y~Cav~~~   98 (113)
T d1smoa_          90 LYQCVIYQP   98 (113)
T ss_dssp             EEEEEECCT
T ss_pred             eEEEEEECC
Confidence            999987643

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.33  E-value=6.4e-06  Score=35.12  Aligned_cols=66  Identities=15%  Similarity=0.175  Sum_probs=42.1

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      +..+.|.|.+.|+.+.  .+.|.++|..+.... .......++.+...+.|.+..   ++...|.|.+....
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~-~~~~~~~dgty~~~S~l~v~~---~~~~~ytC~V~H~s   82 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGN-CSTGPNGDGSFHAWSLLEVKR---GDEHHYQCQVEHEG   82 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCE-EEEEECSSSCEEEEEEEEEET---TCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCccC-ccceecCCCCEeEEEEEEECC---CCCCEEEEEEEeCC
Confidence            3467899999986443  689999998765432 222332233344555666643   45568999998654

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1e-06  Score=38.55  Aligned_cols=71  Identities=15%  Similarity=0.222  Sum_probs=43.5

Q ss_pred             CceEEEEeEeCccCC----CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGFPR----PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      ++.+.+.|.+.++.+    ..+.|.+++..+............++.+...+.|.|..-.......|.|.+.....
T Consensus        18 ~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   92 (105)
T d1l6xa1          18 SRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL   92 (105)
T ss_dssp             TSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             CCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCC
Confidence            567889999987533    35789999887764322111111222334455676655544445689999987654

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=7e-06  Score=35.46  Aligned_cols=66  Identities=12%  Similarity=0.215  Sum_probs=36.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      .|.+++|.|... .......+++++........... .  .......+.+.|..++.+|+|.|+|.-...
T Consensus        17 ~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~-~--~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          17 SGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQ-P--HARGSSRAIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             TTCCEEEEEECS-SCCSEEEEEEC------CEEEC---------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             CCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeE-E--cCCCceEEEEEeeecccCCCeEEEEeeEcC
Confidence            488999999843 33445566676654322110000 0  001111356899999999999999976543

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.33  E-value=1.4e-06  Score=38.29  Aligned_cols=69  Identities=12%  Similarity=0.119  Sum_probs=41.5

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      ++.+.+.|.+.++.+.  .+.|.++|..+.............+.....+.|.+..-..  ...|.|.+.....
T Consensus        24 ~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s~   94 (107)
T d1hxmb2          24 QKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHENN   94 (107)
T ss_dssp             SSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEETTS
T ss_pred             CCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEECCC
Confidence            4568899999886544  5799998876654322111112223344455677655433  2369999987543

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.33  E-value=6.7e-06  Score=36.11  Aligned_cols=64  Identities=17%  Similarity=0.236  Sum_probs=41.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEE---ec---------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIE---LT---------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|...+.....+.|++  .+..   +.         ...++...  ..   .....|.|..++.+|++.|.|-
T Consensus        17 ~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~--~~---~~~~~L~I~~l~~~Dsa~YyCA   91 (109)
T d1bwwa_          17 VGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGS--GS---GTDYTFTISSLQPEDIATYYCQ   91 (109)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE--EE---TTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEee--CC---CCEeEEEEeeceeCcCceEEEe
Confidence            68999999998766566789986  2211   11         01111111  01   1134699999999999999998


Q ss_pred             eeC
Q psy11826         68 ADN   70 (83)
Q Consensus        68 ~~~   70 (83)
                      +..
T Consensus        92 ~~~   94 (109)
T d1bwwa_          92 QYQ   94 (109)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            764

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1e-06  Score=38.75  Aligned_cols=70  Identities=19%  Similarity=0.383  Sum_probs=44.4

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEe-----cCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWF-----LGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      ++.+.+.|.+.++.+.  .|.|.++|..+............     ++.+...+.|.|..-.......|.|.+....
T Consensus        20 ~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          20 NELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             SSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             CCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCC
Confidence            6789999999886433  68999999887654322111110     1122345667776554444678999998754

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.32  E-value=2.3e-06  Score=38.03  Aligned_cols=69  Identities=17%  Similarity=0.367  Sum_probs=41.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEec------ccceEEE---EEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELT------FHKYFQV---HEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~------~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      .|+.++|.|...+. ...+.|++  .|..+.      .......   .............|.|..++.+|++.|.|-+..
T Consensus        14 ~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (115)
T d1ogad1          14 EGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYLCAGAG   92 (115)
T ss_dssp             TTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEcccccC
Confidence            58999999996543 34789987  222111      0000000   011112233356799999999999999998764


Q ss_pred             C
Q psy11826         71 P   71 (83)
Q Consensus        71 ~   71 (83)
                      .
T Consensus        93 ~   93 (115)
T d1ogad1          93 S   93 (115)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.32  E-value=6.1e-06  Score=36.31  Aligned_cols=64  Identities=19%  Similarity=0.337  Sum_probs=41.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCE---Eecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDI---ELTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~---~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.........+.|++  .+.   .+..         ...+....     ......|.|.+++.+|++.|.|-
T Consensus        15 ~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~-----~~~~~~L~I~~~~~~DSa~YyCA   89 (109)
T d1mqkl_          15 VGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG-----SGTQFSLKINSLLPEDFGSYYCQ   89 (109)
T ss_dssp             TTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEec-----cCCEEEEEEccccccCCeeEEEe
Confidence            58999999997665566799997  222   1110         11121111     11135799999999999999998


Q ss_pred             eeC
Q psy11826         68 ADN   70 (83)
Q Consensus        68 ~~~   70 (83)
                      +..
T Consensus        90 ~~~   92 (109)
T d1mqkl_          90 HHY   92 (109)
T ss_dssp             ECS
T ss_pred             eeC
Confidence            653

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.31  E-value=9.9e-07  Score=38.50  Aligned_cols=70  Identities=13%  Similarity=0.188  Sum_probs=41.6

Q ss_pred             CceEEEEeEeCcc-CC---CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGF-PR---PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~-~~---~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      +..+++.|.+.++ |.   ..+.|.++|...............++.+...+.|.+..-.......|.|.+....
T Consensus        16 ~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          16 GLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             SSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             CCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            4567899999875 33   4678999887665432111111112223445567665544344566999998754

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=2e-07  Score=41.10  Aligned_cols=64  Identities=19%  Similarity=0.331  Sum_probs=41.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEec---c---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELT---F---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.........+.|++  .+..+.   .         ..++...     .......|.|.+++.+|++.|.|-
T Consensus        15 ~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~-----~~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d3cx5k1          15 LGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGS-----GSGTDYSLTISNLEPEDIATYFCQ   89 (107)
T ss_dssp             SSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCE-----EETTEEEEECSCCCSCCCSEEEEE
T ss_pred             CCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEE-----ccCCEEEEEEeEeeecCCCcEEee
Confidence            68999999997666666799996  232211   0         0011000     011135799999999999999997


Q ss_pred             eeC
Q psy11826         68 ADN   70 (83)
Q Consensus        68 ~~~   70 (83)
                      ...
T Consensus        90 ~~~   92 (107)
T d3cx5k1          90 HHI   92 (107)
T ss_dssp             ECS
T ss_pred             eCC
Confidence            653

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.30  E-value=8.8e-06  Score=35.18  Aligned_cols=69  Identities=17%  Similarity=0.173  Sum_probs=42.6

Q ss_pred             CceEEEEeEeCccCC--CeEEEEeCCEEecccc-eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcc
Q psy11826          3 GRKITFFCMAEGFPR--PHITWTKDDIELTFHK-YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAI   74 (83)
Q Consensus         3 g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~   74 (83)
                      ++.+.|.|.+.++.+  ..+.|.++|..+.... ........+..+...+.|.+.   .++...|.|.+......
T Consensus        17 ~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~---~~~~~~ytC~V~H~sl~   88 (98)
T d1hdmb1          17 REPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALT---PSYGDTYTCVVEHIGAP   88 (98)
T ss_dssp             SCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEEC---CCTTCCEEEEEECTTSS
T ss_pred             CCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcC---CCCCCEEEEEEEeCCCC
Confidence            466889999998744  4689999998775432 111122112233444556654   44556799999886543

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.27  E-value=8.4e-06  Score=35.21  Aligned_cols=68  Identities=12%  Similarity=0.170  Sum_probs=38.8

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceE-EEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYF-QVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      ++...|.|.+.++.++  .+.|.++|..+...... ......+......+.|   .+..++...|+|.+....-
T Consensus        18 ~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l---~~~~~~~~~ytC~V~H~sl   88 (98)
T d1d5mb1          18 QHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVML---ETVPRSGEVYTCQVEHPSV   88 (98)
T ss_dssp             ---CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEE---ECCCCTTCEEEEEEECTTC
T ss_pred             CCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEe---eEcCCCCCEEEEEEEECCC
Confidence            3455789999886544  68999999877543211 1111111122223333   3456677889999987543

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.27  E-value=1.3e-05  Score=35.85  Aligned_cols=66  Identities=23%  Similarity=0.351  Sum_probs=41.8

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEe--CCEEec---c---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEE
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTK--DDIELT---F---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE   65 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~~---~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   65 (83)
                      +|+.++|.|...+..  ...+.|++  .|..+.   .         ..++....  + .......|.|..++.+|++.|.
T Consensus        15 ~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~--~-~~~~~~~L~i~~~~~~Dsa~Yy   91 (120)
T d1hxma1          15 IGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDI--D-IAKNLAVLKILAPSERDEGSYY   91 (120)
T ss_dssp             TTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEE--E-GGGTEEEEEESSCCGGGCEEEE
T ss_pred             CCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeec--c-ccccceecccccccccCCceee
Confidence            589999999987543  45799986  222111   0         11222211  1 1112467999999999999999


Q ss_pred             EEeeC
Q psy11826         66 CVADN   70 (83)
Q Consensus        66 C~~~~   70 (83)
                      |-...
T Consensus        92 CA~~~   96 (120)
T d1hxma1          92 CACDT   96 (120)
T ss_dssp             EEEEC
T ss_pred             cCccc
Confidence            97654

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.27  E-value=5.2e-08  Score=42.76  Aligned_cols=73  Identities=14%  Similarity=0.139  Sum_probs=44.4

Q ss_pred             CceEEEEeEeCccCC--CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          3 GRKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         3 g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      ++.+.+.|.+.++.+  ..|.|.++|..+............+..+...+.|.+......+...|.|.+.......
T Consensus        20 ~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~~   94 (104)
T d1nfde2          20 TNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV   94 (104)
T ss_dssp             TTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             CCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCcE
Confidence            456788999988543  3689999998876432211111112223344566666555555667999998765443

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.25  E-value=1.3e-05  Score=36.01  Aligned_cols=66  Identities=18%  Similarity=0.416  Sum_probs=40.6

Q ss_pred             CCceEEEEeEeCcc--CCCeEEEEe--CCEEec------cc-----------ceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGF--PRPHITWTK--DDIELT------FH-----------KYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~--~~~~~~w~~--~~~~~~------~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.++|.|.+.+.  ....+.|++  .+..+.      ..           .++.+..  +. ......|.|.+++.+|
T Consensus        15 ~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~--~~-~~~~~~L~i~~l~~~D   91 (123)
T d1hxmb1          15 LSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDR--IP-ETSTSTLTIHNVEKQD   91 (123)
T ss_dssp             TTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEE--ET-TTTEEEEEECSCCGGG
T ss_pred             CCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEee--ec-cccceeeccccccccc
Confidence            48899999998764  345688987  222111      00           0111111  11 1113469999999999


Q ss_pred             CeEEEEEeeC
Q psy11826         61 AGYYECVADN   70 (83)
Q Consensus        61 ~g~y~C~~~~   70 (83)
                      ++.|.|-...
T Consensus        92 sa~YyCA~~~  101 (123)
T d1hxmb1          92 IATYYCALWE  101 (123)
T ss_dssp             CEEEEEEEEE
T ss_pred             CcEEEEeeeC
Confidence            9999997653

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=3.9e-06  Score=36.55  Aligned_cols=70  Identities=16%  Similarity=0.302  Sum_probs=40.7

Q ss_pred             CceEEEEeEeCccCC----CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGFPR----PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      ++.+++.|.+.++.+    ..+.|.+++...............+......+.|.+..-.......|.|.+....
T Consensus        16 ~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~   89 (103)
T d1fp5a1          16 RKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPH   89 (103)
T ss_dssp             TCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             CCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECC
Confidence            566889999988543    2567888776554332222222112222344566665444444677999998754

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.4e-06  Score=37.42  Aligned_cols=57  Identities=21%  Similarity=0.500  Sum_probs=38.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      .|.+++|.|... .......++|+|.......    ..   .  ...+.+.|..++.+|+|.|+|..
T Consensus        17 ~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~~----~~---~--~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2          17 SGEKVTFYCRLD-TATSMFLLLKEGRSSHVQR----GY---G--KVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             TTCEEEEEEECS-SSCSEEEEEEESSSCEEEE----EE---C--SSEEEEEEEECCGGGCEEEEEEC
T ss_pred             CCCcEEEEECCC-CCCCEEEEEECCCccceee----cC---C--CceeEEEecccChhcCceEEEEe
Confidence            589999999853 3445677787664322110    00   1  11457889999999999999974

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.4e-05  Score=35.00  Aligned_cols=71  Identities=17%  Similarity=0.298  Sum_probs=44.9

Q ss_pred             CceEEEEeEeCcc-CC-CeEEEEeCCEEecccceEEEEEEe--cCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGF-PR-PHITWTKDDIELTFHKYFQVHEWF--LGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      .+.+.+.|.+.++ |. ..+.|.++|...............  ++.+...+.|.|..-.......|.|.+.....
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~   94 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGL   94 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            3568899999886 43 368999999876643221111111  12234556788876655556689999987543

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=3.5e-06  Score=36.93  Aligned_cols=71  Identities=13%  Similarity=0.194  Sum_probs=44.2

Q ss_pred             CceEEEEeEeCccCC--CeEEEEeCCEEecccceEEEEEE--ecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQVHEW--FLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      +..+.+.|.+.++.+  ..|.|.++|..+...........  .++.+...+.|.|..-.......|.|.+.....
T Consensus        20 ~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~   94 (107)
T d1mjul2          20 SGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS   94 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             CCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            456889999988643  36899999987764321111111  112234556777766555456789999987543

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=4.6e-06  Score=36.47  Aligned_cols=22  Identities=23%  Similarity=0.579  Sum_probs=19.7

Q ss_pred             EEEEEccCCCCCCeEEEEEeeC
Q psy11826         49 SKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus        49 ~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      .+|.|.+++.+|+|.|.|.+..
T Consensus        69 ~sL~I~~v~~~D~G~Y~C~V~~   90 (110)
T d1ncna_          69 WTLRLHNLQIKDKGLYQCIIHH   90 (110)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEECCCChhHCEEEEEEEEe
Confidence            3699999999999999999863

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.20  E-value=1.2e-05  Score=35.48  Aligned_cols=65  Identities=17%  Similarity=0.283  Sum_probs=40.7

Q ss_pred             CCceEEEEeEeCcc---CCCeEEEEe--CCEEec------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEE
Q psy11826          2 LGRKITFFCMAEGF---PRPHITWTK--DDIELT------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY   64 (83)
Q Consensus         2 ~g~~~~~~C~~~~~---~~~~~~w~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y   64 (83)
                      +|+.+++.|...+.   ....+.|++  .+..+.            ....+....  ..   ....|.|..++.+|++.|
T Consensus        14 ~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~--~~---~~~~L~I~~l~~~Dsa~Y   88 (112)
T d1lgva1          14 PGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSK--SG---NSASLTISGLQAEDEADY   88 (112)
T ss_dssp             TTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--ET---TEEEEEECSCCGGGCEEE
T ss_pred             CCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEEC--CC---CEeeEEeCcCccccCEEE
Confidence            58999999986543   234689996  222111            011111111  11   145799999999999999


Q ss_pred             EEEeeCC
Q psy11826         65 ECVADNP   71 (83)
Q Consensus        65 ~C~~~~~   71 (83)
                      .|-..+.
T Consensus        89 yCa~~~~   95 (112)
T d1lgva1          89 YCSSYDG   95 (112)
T ss_dssp             EEEEECS
T ss_pred             EEeeecC
Confidence            9987653

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.18  E-value=6.3e-06  Score=36.14  Aligned_cols=64  Identities=17%  Similarity=0.263  Sum_probs=40.4

Q ss_pred             CCceEEEEeEeCcc-CCCeEEEEeC--CEE---ec---------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEE
Q psy11826          2 LGRKITFFCMAEGF-PRPHITWTKD--DIE---LT---------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYEC   66 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-~~~~~~w~~~--~~~---~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C   66 (83)
                      .|+.++|.|..... ....+.|++.  +..   +.         ....+....  .   .....|.|.+++.+|++.|.|
T Consensus        15 ~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~--~---~~~~~L~I~~~~~~Dsa~YyC   89 (108)
T d2fx7l1          15 PGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSG--S---GTDFTLTISRLEPEDFAVYYC   89 (108)
T ss_dssp             TTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--E---TTEEEEEESSCCGGGCSEEEE
T ss_pred             CCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeec--C---CCEEEEEehHheecccEEEee
Confidence            68999999986543 3446889862  221   11         011111111  1   113579999999999999999


Q ss_pred             EeeC
Q psy11826         67 VADN   70 (83)
Q Consensus        67 ~~~~   70 (83)
                      -+..
T Consensus        90 a~~~   93 (108)
T d2fx7l1          90 QQYG   93 (108)
T ss_dssp             EECS
T ss_pred             ecCC
Confidence            8754

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.16  E-value=1.5e-05  Score=35.58  Aligned_cols=64  Identities=17%  Similarity=0.324  Sum_probs=41.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CE---Eecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DI---ELTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~---~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.........+.|++.  +.   .+..         ...+....     ......|.|.+++.+|++.|.|.
T Consensus        15 ~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~-----~~~~~~L~I~~~~~~DsavYyCa   89 (119)
T d1f3rb2          15 VGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG-----SGTDYTLTISSLQPEDVATYFCY   89 (119)
T ss_dssp             TTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----EBTEEEEEECSCCGGGCSEEEEE
T ss_pred             CCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccC-----CCCEEEEEcccCccCCCeEEEee
Confidence            589999999976655567899972  21   1110         11111110     11135799999999999999997


Q ss_pred             eeC
Q psy11826         68 ADN   70 (83)
Q Consensus        68 ~~~   70 (83)
                      ...
T Consensus        90 ~~~   92 (119)
T d1f3rb2          90 QYN   92 (119)
T ss_dssp             EES
T ss_pred             ccC
Confidence            664

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.16  E-value=1.1e-05  Score=34.70  Aligned_cols=64  Identities=17%  Similarity=0.258  Sum_probs=39.2

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      .|.+++|.|... .......++++|..........  .  .......+.+.|..++.+|+|.|.|.-..
T Consensus        15 ~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~--~--~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   78 (96)
T d1nkra1          15 SEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIG--E--HHDGVSKANFSISRMTQDLAGTYRCYGSV   78 (96)
T ss_dssp             TTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEEC--E--EETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             CCCcEEEEECCC-CCCCEEEEEECCCcCCceeeee--e--ecCCceEEEEEEcccCcccCeEEEEEEEc
Confidence            488999999954 3344566777653221100000  0  01122246799999999999999997653

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.15  E-value=6.4e-06  Score=36.28  Aligned_cols=64  Identities=14%  Similarity=0.244  Sum_probs=40.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEec------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELT------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.........+.|++  .+..+.            ........     .......|.|..++.+|++.|.|-
T Consensus        14 ~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~L~I~~l~~~DsavYyCA   88 (109)
T d1w72l1          14 PGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGS-----NSGNMATLTISRVEAGDEADYYCQ   88 (109)
T ss_dssp             TTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEE-----EETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeee-----cCCCccceEEeeeccCCCEEEEEE
Confidence            68999999996554455788986  222111            01111111     111235799999999999999998


Q ss_pred             eeC
Q psy11826         68 ADN   70 (83)
Q Consensus        68 ~~~   70 (83)
                      ...
T Consensus        89 ~~~   91 (109)
T d1w72l1          89 VWD   91 (109)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            764

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=2.3e-05  Score=33.17  Aligned_cols=67  Identities=21%  Similarity=0.254  Sum_probs=41.7

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceE-EEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYF-QVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      ++.+.|.|.+.++.+.  .+.|.++|..+...... ......+......+.|.+..   .+...|.|.+....
T Consensus        15 ~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~---~~~~~ytC~V~H~~   84 (89)
T d2mhaa1          15 EDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPL---GKEQYYTCHVYHQG   84 (89)
T ss_dssp             SSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEES---STTTTCEEEEECSS
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecC---cCCCEEEEEEEECC
Confidence            4578999999997554  57999999887643321 11222223344455666653   33446999997653

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.12  E-value=2.2e-05  Score=33.80  Aligned_cols=68  Identities=18%  Similarity=0.217  Sum_probs=38.5

Q ss_pred             CceEEEEeEeCccCC--CeEEEEeCCEEecccceE-EEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGFPR--PHITWTKDDIELTFHKYF-QVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      ++...+.|.+.++.+  ..+.|.++|..+...... ......+..+...+.|.+   ...+...|.|.+....-
T Consensus        16 ~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~ytC~V~H~sl   86 (97)
T d1uvqb1          16 NHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEM---TPQRGDVYTCHVEHPSL   86 (97)
T ss_dssp             ---CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEEC---CSCTTCCEEEEEECTTC
T ss_pred             CCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEecc---CCCCCCEEEEEEEeCCC
Confidence            455678999988654  468999999776543211 111111122233344444   45566789999987543

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.12  E-value=1.1e-05  Score=36.03  Aligned_cols=69  Identities=14%  Similarity=0.098  Sum_probs=40.5

Q ss_pred             CCceEEEEeEeCcc--CCCeEEEEe--CCEE---ec---c-cceEE------EEEEecCCCeEEEEEEEccCCCCCCeEE
Q psy11826          2 LGRKITFFCMAEGF--PRPHITWTK--DDIE---LT---F-HKYFQ------VHEWFLGNNTIKSKMEIDPATQKDAGYY   64 (83)
Q Consensus         2 ~g~~~~~~C~~~~~--~~~~~~w~~--~~~~---~~---~-~~~~~------~~~~~~~~~~~~~~l~i~~~~~~~~g~y   64 (83)
                      .|+.++|.|...+.  ....+.|++  .+..   +.   . .....      ..............|.|.+++.+|++.|
T Consensus        15 ~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~Dsa~Y   94 (120)
T d1ypzf1          15 RDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEAIY   94 (120)
T ss_dssp             TTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGCSEE
T ss_pred             CCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccccccceeE
Confidence            58899999987553  345689987  2221   11   0 00000      0011111122235699999999999999


Q ss_pred             EEEeeC
Q psy11826         65 ECVADN   70 (83)
Q Consensus        65 ~C~~~~   70 (83)
                      .|-...
T Consensus        95 yCA~~~  100 (120)
T d1ypzf1          95 YCSYGE  100 (120)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            997654

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.7e-05  Score=34.03  Aligned_cols=67  Identities=16%  Similarity=0.188  Sum_probs=39.9

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEE-EEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQV-HEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      +..+.|.|.+.|+.+.  .++|.++|..+........ ...........+.|.+.   ..+...|+|.+....
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~---~~~~~~ytC~V~H~~   84 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVP---SGEEQRYTCHVQHEG   84 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEE---cCCCCEEEEEEEECc
Confidence            3568899999997554  4799999987765322111 11111122333445443   344567999998754

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.10  E-value=1.4e-05  Score=34.50  Aligned_cols=61  Identities=10%  Similarity=0.184  Sum_probs=36.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      .|.+++|.|... .+.....|+|+|............   ...   ...+.|..+...|+|.|.|.-.
T Consensus        19 ~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~---~~~---~~~f~~~~~~~~~~G~Y~C~y~   79 (99)
T d1nkra2          19 AGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPK---VNG---TFQADFPLGPATHGGTYRCFGS   79 (99)
T ss_dssp             TTCEEEEEEEES-SCCSEEEEEETTCSSCEEEECEEE---ETT---EEEEEEEEEECCSCEEEEEEEE
T ss_pred             CCCeEEEEECCC-CCccEEEEEECCCccccEEEcccc---CCc---cEEEEEeccccccCEEEEEEee
Confidence            589999999853 344567788887543321110000   000   2345666777789999999754

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.10  E-value=1.2e-05  Score=35.43  Aligned_cols=64  Identities=17%  Similarity=0.320  Sum_probs=40.1

Q ss_pred             CCceEEEEeEeCcc--CCCeEEEEeC--CEE---ecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEE
Q psy11826          2 LGRKITFFCMAEGF--PRPHITWTKD--DIE---LTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE   65 (83)
Q Consensus         2 ~g~~~~~~C~~~~~--~~~~~~w~~~--~~~---~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   65 (83)
                      +|+.++|.|...+.  ....+.|++.  +..   +..         ..++...  ...   ....|.|.+++.+|++.|.
T Consensus        14 ~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~--~~~---~~~~L~I~~~~~~Dsa~Yy   88 (111)
T d1rzfl1          14 PGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGS--KSG---TSATLGITGLQTGDEADYY   88 (111)
T ss_dssp             TTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEE--EET---TEEEEEESSCCGGGCSEEE
T ss_pred             CCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeee--CCC---CEeeeEEeeeccccCcceE
Confidence            68999999986543  3456899862  211   110         1111111  111   1357999999999999999


Q ss_pred             EEeeC
Q psy11826         66 CVADN   70 (83)
Q Consensus        66 C~~~~   70 (83)
                      |-...
T Consensus        89 CA~~~   93 (111)
T d1rzfl1          89 CGTWD   93 (111)
T ss_dssp             EEEEE
T ss_pred             EeecC
Confidence            98764

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.10  E-value=1.8e-06  Score=38.02  Aligned_cols=69  Identities=12%  Similarity=0.130  Sum_probs=40.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEec------c-cceEEE--EEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELT------F-HKYFQV--HEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~------~-~~~~~~--~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      +|+.++|.|.........+.|++  .|..+.      . ......  .............|.|.++..+|++.|.|-+..
T Consensus        14 ~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~   93 (110)
T d1ac6a_          14 EEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYYCALSG   93 (110)
T ss_dssp             TTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEEEEEEE
T ss_pred             CCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccceeecC
Confidence            58899999986555556799987  232111      0 000000  000011111234688999999999999997754

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.09  E-value=1.3e-05  Score=35.28  Aligned_cols=68  Identities=16%  Similarity=0.246  Sum_probs=39.7

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEe---cc-cceEEEEEE--------ecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIEL---TF-HKYFQVHEW--------FLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~---~~-~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.... ....+.|++  .+..+   .. .........        ..........|.|.+++.+|++.|.|-
T Consensus        13 ~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa   91 (112)
T d1kgce1          13 RGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDSAVYLCA   91 (112)
T ss_dssp             TTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCCEEEEEe
Confidence            6899999998533 345789987  22211   10 000000000        001112235799999999999999998


Q ss_pred             eeC
Q psy11826         68 ADN   70 (83)
Q Consensus        68 ~~~   70 (83)
                      +..
T Consensus        92 ~~~   94 (112)
T d1kgce1          92 SSL   94 (112)
T ss_dssp             EES
T ss_pred             eeC
Confidence            754

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.09  E-value=1.9e-05  Score=34.74  Aligned_cols=66  Identities=14%  Similarity=0.241  Sum_probs=40.9

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEe--CCEEec------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEE
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTK--DDIELT------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE   65 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   65 (83)
                      .|+.++|.|...+..  ...+.|++  .+..+.            ...+.....   ........|.|.+++.+|++.|.
T Consensus        14 ~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~i~~l~~~Dsa~Yy   90 (111)
T d1cd0a_          14 PGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSI---DRSSNSASLTISGLKTEDEADYY   90 (111)
T ss_dssp             TTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE---ETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEee---cCCCCccccccccCCcccCcEEE
Confidence            689999999876533  34588986  222111            011122111   11122567999999999999999


Q ss_pred             EEeeC
Q psy11826         66 CVADN   70 (83)
Q Consensus        66 C~~~~   70 (83)
                      |-...
T Consensus        91 CA~~~   95 (111)
T d1cd0a_          91 CQSYD   95 (111)
T ss_dssp             EEEEE
T ss_pred             Eeecc
Confidence            97654

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.09  E-value=2e-05  Score=34.70  Aligned_cols=64  Identities=22%  Similarity=0.286  Sum_probs=40.3

Q ss_pred             CCceEEEEeEeCccC---CCeEEEEe--CCEEecc------------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEE
Q psy11826          2 LGRKITFFCMAEGFP---RPHITWTK--DDIELTF------------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYY   64 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~---~~~~~w~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y   64 (83)
                      .|+.++|.|...+..   .-.+.|++  .+.....            ..++....  ..   ....|.|.+++.+|++.|
T Consensus        14 ~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~--~~---~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_          14 PGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL--IG---NKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             TTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEE--ET---TEEEEEEESCCGGGCEEE
T ss_pred             CCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecc--cc---cceeeecCCCCccccEeE
Confidence            589999999976432   22388986  2322210            11222111  11   235799999999999999


Q ss_pred             EEEeeC
Q psy11826         65 ECVADN   70 (83)
Q Consensus        65 ~C~~~~   70 (83)
                      .|-...
T Consensus        89 yCa~~~   94 (110)
T d1oaql_          89 FCALWY   94 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEccc
Confidence            998764

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.08  E-value=2.6e-06  Score=37.61  Aligned_cols=65  Identities=22%  Similarity=0.338  Sum_probs=40.3

Q ss_pred             CCceEEEEeEeCcc----CCCeEEEEe--CCEEecc------------cceEEEEEEecCCCeEEEEEEEccCCCCCCeE
Q psy11826          2 LGRKITFFCMAEGF----PRPHITWTK--DDIELTF------------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         2 ~g~~~~~~C~~~~~----~~~~~~w~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   63 (83)
                      +|+.++|.|.....    ....+.|++  .+..+..            ......     ........|.|.+++.+|++.
T Consensus        15 ~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~-----~~~~~~~~L~I~~~~~~Dsa~   89 (111)
T d1j05a_          15 LGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSG-----TGSRTDFTLIIDPVEADDVAT   89 (111)
T ss_dssp             TTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE-----ECSSSEEEEEESSCCGGGCEE
T ss_pred             CCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEE-----ecCCCEEEEEEcccccccCcc
Confidence            58999999986432    233488986  3322110            011111     112224679999999999999


Q ss_pred             EEEEeeCC
Q psy11826         64 YECVADNP   71 (83)
Q Consensus        64 y~C~~~~~   71 (83)
                      |.|-..+.
T Consensus        90 YyCa~~~~   97 (111)
T d1j05a_          90 YYCQQTNE   97 (111)
T ss_dssp             EEEEECSS
T ss_pred             EEEeecCC
Confidence            99977643

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=9.3e-06  Score=35.22  Aligned_cols=71  Identities=14%  Similarity=0.272  Sum_probs=42.0

Q ss_pred             CceEEEEeEeCccCC--CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          3 GRKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         3 g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      ++.+.+.|.+.++.+  ..+.|..++..........  ...++.....+.|.|..-... .+.|.|.+........
T Consensus        20 ~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~--~~~~g~~s~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~   92 (101)
T d1kcvh2          20 ASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSA--VLQSGLYTLSSNTTVASGTWP-SASVTCLVAHPKSSTA   92 (101)
T ss_dssp             CSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCC--EEETTEEEEEEEEEEETTTTT-TSCCEEEEEEGGGTEE
T ss_pred             CCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeee--ecCCCCEEEEEEEEEchhhcC-CCeEEEEEEeCCCCee
Confidence            567899999988543  3689987764322111000  011233344567777665553 4679999987655443

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.06  E-value=2.5e-05  Score=34.60  Aligned_cols=64  Identities=19%  Similarity=0.367  Sum_probs=40.6

Q ss_pred             CCceEEEEeEeCcc--CCCeEEEEeCC--EE---ecc---------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEE
Q psy11826          2 LGRKITFFCMAEGF--PRPHITWTKDD--IE---LTF---------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYE   65 (83)
Q Consensus         2 ~g~~~~~~C~~~~~--~~~~~~w~~~~--~~---~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~   65 (83)
                      .|+.++|.|...+.  ....+.|++..  ..   +..         ..+.....  .   .....|.|.+++.+|++.|.
T Consensus        14 ~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~--~---~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_          14 PGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASK--S---GTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             TTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEE--E---TTEEEEEESSCCGGGCEEEE
T ss_pred             CCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecC--C---CCeeeeEecccCcccCceEE
Confidence            58999999987553  35678999722  11   110         01111111  1   11357999999999999999


Q ss_pred             EEeeC
Q psy11826         66 CVADN   70 (83)
Q Consensus        66 C~~~~   70 (83)
                      |-...
T Consensus        89 CA~~~   93 (114)
T d2rhea_          89 CAAWN   93 (114)
T ss_dssp             EEEEE
T ss_pred             EeecC
Confidence            98753

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.05  E-value=1.7e-05  Score=34.90  Aligned_cols=68  Identities=22%  Similarity=0.413  Sum_probs=39.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEecc----cceEEEEE-------E-ecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELTF----HKYFQVHE-------W-FLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~~----~~~~~~~~-------~-~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      .|+.++|.|.... ....+.|++  .+..+..    ........       + ..........|.|.+++.+|++.|.|-
T Consensus        13 ~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa   91 (111)
T d2esve1          13 KGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSGVYFCA   91 (111)
T ss_dssp             TTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCCceEEEe
Confidence            5899999998443 345789986  2321110    00000000       0 001112235799999999999999997


Q ss_pred             eeC
Q psy11826         68 ADN   70 (83)
Q Consensus        68 ~~~   70 (83)
                      +..
T Consensus        92 ~~~   94 (111)
T d2esve1          92 SSQ   94 (111)
T ss_dssp             EES
T ss_pred             eeC
Confidence            553

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=98.05  E-value=3.8e-05  Score=32.78  Aligned_cols=67  Identities=21%  Similarity=0.253  Sum_probs=39.3

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceEE--EEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQ--VHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      ...+.|.|.+.++.+.  .+.|.++|..+.......  .....+......+.|.+.   ..+...|.|.+....
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~---~~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRIC---QGEEQRFTCYMEHSG   85 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEE---TTCGGGEEEEEEETT
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEECC
Confidence            3457899999986443  589999998776432211  111111222334445554   344457999997643

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.2e-05  Score=35.71  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=20.2

Q ss_pred             EEEEEEccCCCCCCeEEEEEeeC
Q psy11826         48 KSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus        48 ~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      ..+|.|.+++.+|+|.|.|.+..
T Consensus        82 ~~sL~I~~v~~~DsG~Y~C~v~~  104 (121)
T d2g5ra1          82 NCTLSIRDARMSDAGRYFFRMEK  104 (121)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEEECCCChHHCEEEEEEEEe
Confidence            45799999999999999999854

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.03  E-value=1.7e-05  Score=34.90  Aligned_cols=68  Identities=18%  Similarity=0.325  Sum_probs=40.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEecc----cceEEEEEEec-------CCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELTF----HKYFQVHEWFL-------GNNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~~----~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      +|+.++|.|.... ....+.|++  .+.....    ...........       ........|.|.+++.+|++.|.|-+
T Consensus        13 ~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~   91 (113)
T d2ntsp1          13 RGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALYLCAS   91 (113)
T ss_dssp             TTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccceeeeeee
Confidence            6899999998544 345789997  3322211    00000000000       01112357999999999999999977


Q ss_pred             eC
Q psy11826         69 DN   70 (83)
Q Consensus        69 ~~   70 (83)
                      ..
T Consensus        92 ~~   93 (113)
T d2ntsp1          92 SL   93 (113)
T ss_dssp             ES
T ss_pred             eC
Confidence            54

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=5.1e-05  Score=33.55  Aligned_cols=22  Identities=23%  Similarity=0.527  Sum_probs=19.4

Q ss_pred             EEEEEEccCCCCCCeEEEEEee
Q psy11826         48 KSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus        48 ~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      ...|.|.+++.+|++.|.|...
T Consensus        74 ~~~L~I~~l~~~Dsa~YyCa~~   95 (117)
T d1dqta_          74 RVNLTIQGLRAVDTGLYLCKVE   95 (117)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEEhhcCccccCEeEEEEEe
Confidence            3579999999999999999775

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=2.2e-05  Score=33.45  Aligned_cols=53  Identities=21%  Similarity=0.471  Sum_probs=36.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCC-CCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPAT-QKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~   70 (83)
                      .|..+.+.|+..+.  ..|.|.+++..++.....              .|.+..-+ .+++|.|.|....
T Consensus        13 SGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~~~--------------~L~L~~FSE~e~SGyY~C~~~~   66 (100)
T d1jbja2          13 SGTSVELTCPLDSD--ENLKWEKNGQELPQKHDK--------------HLVLQDFSEVEDSGYYVCYTPA   66 (100)
T ss_dssp             ETTEEEEECSSCCC--TTCEEEETTEEECSCCCS--------------EEEEESCCTTTSCEEEEEECSS
T ss_pred             eCCEEEEECCCCCC--CceEEeeccccCCCCCCc--------------EEEEccccccccCcceEEecCC
Confidence            47889999995443  469999999988864321              24445533 4789999997543

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.01  E-value=3.5e-05  Score=33.96  Aligned_cols=69  Identities=14%  Similarity=0.365  Sum_probs=40.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEec------ccceEEEEE----E-ecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELT------FHKYFQVHE----W-FLGNNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~------~~~~~~~~~----~-~~~~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      +|+.++|.|... .....+.|++  .+..+.      .........    . ..........|.|..+..+|++.|.|-.
T Consensus        13 ~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa~YyCa~   91 (114)
T d1ogae1          13 EGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFYLCAS   91 (114)
T ss_dssp             TTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEEEEEE
T ss_pred             CCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCceeEEEee
Confidence            589999999964 3456799996  222111      000000000    0 0001111346999999999999999977


Q ss_pred             eCC
Q psy11826         69 DNP   71 (83)
Q Consensus        69 ~~~   71 (83)
                      ...
T Consensus        92 ~~~   94 (114)
T d1ogae1          92 SSR   94 (114)
T ss_dssp             ESS
T ss_pred             ccC
Confidence            643

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.99  E-value=8e-06  Score=35.86  Aligned_cols=63  Identities=19%  Similarity=0.482  Sum_probs=40.0

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEec--c----------cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELT--F----------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~--~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.........+.|++  .|..+.  .          ..++....  ..   ....|.|..++.+|++.|.|-
T Consensus        13 ~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~--~~---~~~~L~I~~l~~~Dsa~YyCA   87 (108)
T d1nfde1          13 VGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST--SG---TTATLTISGAQPEDEAAYYCL   87 (108)
T ss_dssp             TTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE--ET---TEEEEEETTCCGGGCSEEEEE
T ss_pred             CCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecC--CC---CEeeeeEcCccccCCceEEEE
Confidence            58899999987554445688986  232111  0          11122111  11   135799999999999999997


Q ss_pred             ee
Q psy11826         68 AD   69 (83)
Q Consensus        68 ~~   69 (83)
                      +.
T Consensus        88 ~~   89 (108)
T d1nfde1          88 SS   89 (108)
T ss_dssp             EE
T ss_pred             ee
Confidence            65

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.99  E-value=5.8e-05  Score=33.19  Aligned_cols=65  Identities=20%  Similarity=0.308  Sum_probs=39.5

Q ss_pred             CCceEEEEeEeCcc----CCCeEEEEe--CCEEec----c--------cceEEEEEEecCCCeEEEEEEEccCCCCCCeE
Q psy11826          2 LGRKITFFCMAEGF----PRPHITWTK--DDIELT----F--------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGY   63 (83)
Q Consensus         2 ~g~~~~~~C~~~~~----~~~~~~w~~--~~~~~~----~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~   63 (83)
                      +|+.++|.|.....    ....+.|++  .+....    .        ..++....     ......|.|..++.+|++.
T Consensus        15 ~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~-----~~~~~~L~I~~~~~~DsA~   89 (111)
T d2gsia1          15 LGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSG-----SGTDFTLNIHPVEEEDAAT   89 (111)
T ss_dssp             TTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEE
T ss_pred             CCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEec-----CCCchhcccccccccCCce
Confidence            58999999986432    123488986  222111    0        11221110     1113579999999999999


Q ss_pred             EEEEeeCC
Q psy11826         64 YECVADNP   71 (83)
Q Consensus        64 y~C~~~~~   71 (83)
                      |.|-+...
T Consensus        90 YyCa~~~~   97 (111)
T d2gsia1          90 YYCSHIRE   97 (111)
T ss_dssp             EEEEECSS
T ss_pred             EEEEECCC
Confidence            99976643

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.97  E-value=5.2e-05  Score=33.38  Aligned_cols=64  Identities=14%  Similarity=0.244  Sum_probs=39.5

Q ss_pred             CCceEEEEeEeCcc-----CCCeEEEEe--CCEEec----c--------cceEEEEEEecCCCeEEEEEEEccCCCCCCe
Q psy11826          2 LGRKITFFCMAEGF-----PRPHITWTK--DDIELT----F--------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAG   62 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-----~~~~~~w~~--~~~~~~----~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   62 (83)
                      +|+.++|.|...+.     ....+.|++  .|....    .        ..++..     ........|.|..++.+|++
T Consensus        15 ~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~-----~~s~~~~~L~Is~~~~~DsA   89 (112)
T d1mjul1          15 PGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSG-----SGSGTAFTLRISRVEAEDVG   89 (112)
T ss_dssp             TTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE-----EECSSEEEEEESSCCGGGCE
T ss_pred             CCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEe-----ecCCCEEEEEECCccccCCc
Confidence            68999999986542     245688986  222111    0        011111     11122457999999999999


Q ss_pred             EEEEEeeC
Q psy11826         63 YYECVADN   70 (83)
Q Consensus        63 ~y~C~~~~   70 (83)
                      .|.|-...
T Consensus        90 vYyCa~~~   97 (112)
T d1mjul1          90 VYYCLQHL   97 (112)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEeCC
Confidence            99996543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.97  E-value=4.1e-05  Score=34.23  Aligned_cols=65  Identities=14%  Similarity=0.347  Sum_probs=39.7

Q ss_pred             CCceEEEEeEeCccC----CCeEEEEe--CCEEec------cc----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          2 LGRKITFFCMAEGFP----RPHITWTK--DDIELT------FH----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~----~~~~~w~~--~~~~~~------~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      .|+.++|.|.+.|..    ...+.|++  .+..+.      ..          .++.+.   .+.......|.|..++.+
T Consensus        14 PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s---~d~s~~~~~L~i~~l~~e   90 (120)
T d2agjh1          14 PTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTIT---KDASKKQVVLTLTNLDPV   90 (120)
T ss_dssp             SSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEE---CCTTTTEEEEEEESCCGG
T ss_pred             CCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhcccccee---cccccceeeeeEEeeeec
Confidence            588999999977642    24688986  222111      00          011111   111222457999999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |.+.|.|-..
T Consensus        91 DsAvYyCAr~  100 (120)
T d2agjh1          91 DTATYYCART  100 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEeeEec
Confidence            9999999644

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.96  E-value=7e-05  Score=32.78  Aligned_cols=68  Identities=16%  Similarity=0.256  Sum_probs=39.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEe---c---ccceEEEEEEecC-----CCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIEL---T---FHKYFQVHEWFLG-----NNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~---~---~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      +|++++|.|.... ....+.|++  .|...   .   .............     .......|.|.+++.+|++.|.|-.
T Consensus        15 ~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   93 (110)
T d2aq2a1          15 TGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQTSVYFCAS   93 (110)
T ss_dssp             TTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhCEEEEEee
Confidence            6899999998654 346799997  22211   1   0000000000000     0111356899999999999999977


Q ss_pred             eC
Q psy11826         69 DN   70 (83)
Q Consensus        69 ~~   70 (83)
                      ..
T Consensus        94 ~~   95 (110)
T d2aq2a1          94 GG   95 (110)
T ss_dssp             EE
T ss_pred             CC
Confidence            64

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.95  E-value=6.8e-05  Score=32.51  Aligned_cols=63  Identities=19%  Similarity=0.286  Sum_probs=38.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CEEec------------ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DIELT------------FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.... ....+.|++.  +....            ....+....     ......|.|.+++.+|++.|.|-
T Consensus        14 ~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~-----~~~~~~L~I~~~~~~Dsa~YyCa   87 (104)
T d1yqvl1          14 PGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSG-----SGTSYSLTISSMETEDAATYYCQ   87 (104)
T ss_dssp             TTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-----ETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEec-----CCCEEEEEecccCcccCCeEEEE
Confidence            6899999998643 3345789862  21110            011111111     11235799999999999999997


Q ss_pred             eeC
Q psy11826         68 ADN   70 (83)
Q Consensus        68 ~~~   70 (83)
                      ...
T Consensus        88 ~~~   90 (104)
T d1yqvl1          88 QWG   90 (104)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            654

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.94  E-value=1.2e-05  Score=35.46  Aligned_cols=68  Identities=12%  Similarity=0.336  Sum_probs=39.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEecc-----cceEEEEEE------ecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELTF-----HKYFQVHEW------FLGNNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~~-----~~~~~~~~~------~~~~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      +|+.++|.|... .....+.|++  .|..+..     .........      ..........|.|..++.+|++.|.|-+
T Consensus        14 ~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~   92 (113)
T d1j8he1          14 TGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTSMYLCAS   92 (113)
T ss_dssp             TTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCcccEEeeE
Confidence            589999999853 3345789987  2322110     000000000      0001111246999999999999999987


Q ss_pred             eC
Q psy11826         69 DN   70 (83)
Q Consensus        69 ~~   70 (83)
                      ..
T Consensus        93 ~~   94 (113)
T d1j8he1          93 SS   94 (113)
T ss_dssp             EC
T ss_pred             cc
Confidence            64

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=6e-05  Score=31.07  Aligned_cols=57  Identities=25%  Similarity=0.386  Sum_probs=37.1

Q ss_pred             CCceEEEEeEeCccCC--CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      .|..+.|.|.....+.  ..-.|.++|..+.......          ......+..  ..++|.|.|...+
T Consensus        11 ~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~----------~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          11 LGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG----------QKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             ETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC----------SEEEEEECG--GGCCEEEEEEEES
T ss_pred             CCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCC----------CceEEEEec--CCCCceEEEEEcC
Confidence            3677899999654433  3468999999887643210          022455554  5578999999753

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.93  E-value=8.3e-05  Score=32.62  Aligned_cols=69  Identities=12%  Similarity=0.286  Sum_probs=39.9

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CEEecc------cceEEEEEEecC----CCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DIELTF------HKYFQVHEWFLG----NNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~~~~~------~~~~~~~~~~~~----~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      +|+.++|.|.........+.|++.  |..+..      ............    .......|.|.....+|++.|.|.+.
T Consensus        15 ~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~dsa~Y~Ca~~   94 (112)
T d1fo0b_          15 RGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRTLYCTCS   94 (112)
T ss_dssp             TTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSCEEEEEEEE
T ss_pred             CCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCCccEEEEEe
Confidence            589999999976655668999972  322110      000010000000    00111357788888999999999864


Q ss_pred             C
Q psy11826         70 N   70 (83)
Q Consensus        70 ~   70 (83)
                      .
T Consensus        95 ~   95 (112)
T d1fo0b_          95 A   95 (112)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.91  E-value=9.1e-05  Score=32.64  Aligned_cols=64  Identities=16%  Similarity=0.285  Sum_probs=39.5

Q ss_pred             CCceEEEEeEeCcc-----CCCeEEEEe--CCEEec----c--------cceEEEEEEecCCCeEEEEEEEccCCCCCCe
Q psy11826          2 LGRKITFFCMAEGF-----PRPHITWTK--DDIELT----F--------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAG   62 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-----~~~~~~w~~--~~~~~~----~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   62 (83)
                      +|+.++|.|...+.     ....+.|++  .|....    .        ...+...     .......|.|..+..+|++
T Consensus        16 ~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~-----~~~~~~~L~I~~~~~~Dsa   90 (113)
T d1n4xl_          16 LGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGS-----GSGTDFTLKISRVEAEDLG   90 (113)
T ss_dssp             TTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----ECSSEEEEEESSCCGGGCE
T ss_pred             CCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeee-----ccCCcccCccCCCCcccCE
Confidence            68999999996532     224688986  222111    0        1111111     1112357999999999999


Q ss_pred             EEEEEeeC
Q psy11826         63 YYECVADN   70 (83)
Q Consensus        63 ~y~C~~~~   70 (83)
                      .|.|-...
T Consensus        91 vYyCa~~~   98 (113)
T d1n4xl_          91 IYYCFQGS   98 (113)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEECC
Confidence            99996554

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.91  E-value=6.4e-05  Score=33.11  Aligned_cols=64  Identities=16%  Similarity=0.234  Sum_probs=39.0

Q ss_pred             CCceEEEEeEeCcc------CCCeEEEEe--CCEEec-----------c-cceEEEEEEecCCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGF------PRPHITWTK--DDIELT-----------F-HKYFQVHEWFLGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~------~~~~~~w~~--~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   61 (83)
                      +|+.++|.|...+.      ....+.|++  .+..+.           . .......  . .  .....|.|..++.+|+
T Consensus        15 ~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~--~-s--~~~~~L~I~~l~~~Ds   89 (113)
T d1q9ra1          15 AGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGS--G-S--GTDFTLTITSVQAEDL   89 (113)
T ss_dssp             TTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--E-E--TTEEEEEESSCCGGGC
T ss_pred             CCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEe--C-C--CCeEeEEecccccCCC
Confidence            58999999986532      223588987  222111           0 1111111  0 1  1134699999999999


Q ss_pred             eEEEEEeeC
Q psy11826         62 GYYECVADN   70 (83)
Q Consensus        62 g~y~C~~~~   70 (83)
                      +.|.|-...
T Consensus        90 a~YyCA~~~   98 (113)
T d1q9ra1          90 AVYYCKQSY   98 (113)
T ss_dssp             EEEEEEECS
T ss_pred             eEEEecccC
Confidence            999997754

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.91  E-value=2e-05  Score=34.17  Aligned_cols=71  Identities=18%  Similarity=0.370  Sum_probs=40.6

Q ss_pred             CceEEEEeEeCccCC--CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCccee
Q psy11826          3 GRKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAIDR   76 (83)
Q Consensus         3 g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~~   76 (83)
                      ++.+.+.|.+.++.+  ..+.|..++....... .. ....++.+...+.|.|..-... .+.|.|.+........
T Consensus        20 ~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~-~~-~~~~~g~ys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~   92 (102)
T d1mjuh2          20 GSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHT-FP-AVLQSDLYTLSSSVTVTSSTWP-SQSITCNVAHPASSTK   92 (102)
T ss_dssp             --CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE-CC-CEEETTEEEEEEEEEECTTTTT-TSCCEEEEEEGGGTEE
T ss_pred             CCcEEEEEEEeeeeCCCeEEEECcCCccCCeEe-cc-cccCCCCEEEEEEEEEehhHcC-CceEEEEEEECCCCEE
Confidence            467899999988643  3689976653321110 00 0111233344567777766653 4679999987665543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.90  E-value=0.0001  Score=32.90  Aligned_cols=65  Identities=12%  Similarity=0.218  Sum_probs=40.0

Q ss_pred             CCCceEEEEeEeCccCC--CeEEEEe--CCEEe------cc----------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          1 MLGRKITFFCMAEGFPR--PHITWTK--DDIEL------TF----------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~--~~~~w~~--~~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      +.|+.++|.|.+.|...  -.+.|++  .|..+      ..          ..++.+..  +.+ .....|.|..++.+|
T Consensus        13 kPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~--D~s-~nt~~L~i~~l~~eD   89 (120)
T d1dn0b1          13 KPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISV--DTS-KNQFSLKLSSVTAAD   89 (120)
T ss_dssp             CTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEE--ETT-TTEEEEEECSCCGGG
T ss_pred             CCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEec--cCc-hheeccccccccccc
Confidence            36899999999887543  3577876  22211      11          11222222  111 123459999999999


Q ss_pred             CeEEEEEe
Q psy11826         61 AGYYECVA   68 (83)
Q Consensus        61 ~g~y~C~~   68 (83)
                      ...|.|-.
T Consensus        90 tA~YYCAr   97 (120)
T d1dn0b1          90 TAVYYCAR   97 (120)
T ss_dssp             CEEEEEEE
T ss_pred             ccEEEEEe
Confidence            99999943

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.90  E-value=0.0001  Score=32.72  Aligned_cols=66  Identities=14%  Similarity=0.398  Sum_probs=40.7

Q ss_pred             CCCceEEEEeEeCccCC--CeEEEEe--CCEEec------c----------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          1 MLGRKITFFCMAEGFPR--PHITWTK--DDIELT------F----------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~--~~~~w~~--~~~~~~------~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      +.|+.++|.|.+.|...  -.+.|++  .|..+.      .          ..++.+..  +. ......|.+..++.+|
T Consensus        13 kPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~--D~-s~n~~~L~~~sL~~eD   89 (117)
T d1c5db1          13 QPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINR--DT-SKSQVFLKMNSLQTED   89 (117)
T ss_dssp             CTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEE--ET-TTTEEEEEECSCCGGG
T ss_pred             CCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEec--cc-ccceeeccccccccCc
Confidence            35889999999987543  3577875  222210      0          11222221  11 2223469999999999


Q ss_pred             CeEEEEEee
Q psy11826         61 AGYYECVAD   69 (83)
Q Consensus        61 ~g~y~C~~~   69 (83)
                      ...|.|-..
T Consensus        90 tAvYYCAr~   98 (117)
T d1c5db1          90 TAIYFCTRE   98 (117)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEecc
Confidence            999999654

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=9.7e-05  Score=32.46  Aligned_cols=67  Identities=18%  Similarity=0.343  Sum_probs=42.2

Q ss_pred             CCCceEEEEeEeCcc--CCCeEEEEeC--CEE---ec--c--cc--------eEEEEEEecCCCeEEEEEEEccCCCCCC
Q psy11826          1 MLGRKITFFCMAEGF--PRPHITWTKD--DIE---LT--F--HK--------YFQVHEWFLGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~--~~~~~~w~~~--~~~---~~--~--~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~~~   61 (83)
                      ++|+.+++.|...+.  ..-.+.|.+.  +..   +.  .  ..        ++.+.   .+.......|.|..++.+|.
T Consensus         8 ~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis---~d~~~~~~~lti~~L~~eDs   84 (110)
T d1u9ka_           8 VEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLK---HDPSEAMLQVQMTDLQVTDS   84 (110)
T ss_dssp             CTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEE---EEGGGTEEEEEECSCCGGGC
T ss_pred             CCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEE---EECCCCEEEEEECccccCCC
Confidence            479999999997653  4556889872  221   11  0  00        11111   11222345799999999999


Q ss_pred             eEEEEEeeC
Q psy11826         62 GYYECVADN   70 (83)
Q Consensus        62 g~y~C~~~~   70 (83)
                      |.|.|....
T Consensus        85 a~YyCa~~~   93 (110)
T d1u9ka_          85 GLYRCVIYH   93 (110)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEeC
Confidence            999998754

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=7.2e-06  Score=35.93  Aligned_cols=24  Identities=13%  Similarity=0.225  Sum_probs=20.7

Q ss_pred             EEEEEEccCCCCCCeEEEEEeeCC
Q psy11826         48 KSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus        48 ~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      ..+|.|.+++.+|+|.|.|.+...
T Consensus        78 ~~sL~I~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          78 VCNLLLKDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEECC
T ss_pred             EEEEEECCCChhHCEEEEEEEEeC
Confidence            446999999999999999988654

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.89  E-value=5.3e-05  Score=33.27  Aligned_cols=67  Identities=13%  Similarity=0.254  Sum_probs=39.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEecc-----cceEEEEEEec------CCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELTF-----HKYFQVHEWFL------GNNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~~-----~~~~~~~~~~~------~~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      +|+.++|.|.... ....+.|++  .+..+..     ...........      ........|.|..+..+|++.|.|-.
T Consensus        13 ~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsavYyCA~   91 (112)
T d2bnub1          13 TGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFCAS   91 (112)
T ss_dssp             TTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEEEEEee
Confidence            5899999998643 356799986  3322211     00001000000      01111246999999999999999976


Q ss_pred             e
Q psy11826         69 D   69 (83)
Q Consensus        69 ~   69 (83)
                      .
T Consensus        92 ~   92 (112)
T d2bnub1          92 S   92 (112)
T ss_dssp             E
T ss_pred             c
Confidence            5

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.88  E-value=9.6e-05  Score=32.54  Aligned_cols=64  Identities=14%  Similarity=0.285  Sum_probs=38.6

Q ss_pred             CCceEEEEeEeCcc-----CCCeEEEEe--CCEEecc------------cceEEEEEEecCCCeEEEEEEEccCCCCCCe
Q psy11826          2 LGRKITFFCMAEGF-----PRPHITWTK--DDIELTF------------HKYFQVHEWFLGNNTIKSKMEIDPATQKDAG   62 (83)
Q Consensus         2 ~g~~~~~~C~~~~~-----~~~~~~w~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g   62 (83)
                      +|+.++|.|...+.     ....+.|++  .|..+..            ...+...     .......|.|..++.+|++
T Consensus        15 ~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~-----~~~~~~~L~I~~~~~eDsA   89 (112)
T d1ncwl1          15 IGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGS-----GSGTDFTLKISRVEAEDLG   89 (112)
T ss_dssp             TTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE-----EETTEEEEEESSCCGGGCE
T ss_pred             CCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEee-----CCCCEEEEEECccccCcCE
Confidence            58999999986432     234588986  2322110            0111110     0111246999999999999


Q ss_pred             EEEEEeeC
Q psy11826         63 YYECVADN   70 (83)
Q Consensus        63 ~y~C~~~~   70 (83)
                      .|.|-..+
T Consensus        90 vYYC~~~~   97 (112)
T d1ncwl1          90 VYYCWQGT   97 (112)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEcCC
Confidence            99996543

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=6.1e-05  Score=33.35  Aligned_cols=69  Identities=13%  Similarity=0.144  Sum_probs=39.3

Q ss_pred             CCceEEEEeEeCccCCC---eEEEEe--CCEEecc-------cceEEEE-EE--ecCCCeEEEEEEEccCCCCCCeEEEE
Q psy11826          2 LGRKITFFCMAEGFPRP---HITWTK--DDIELTF-------HKYFQVH-EW--FLGNNTIKSKMEIDPATQKDAGYYEC   66 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~---~~~w~~--~~~~~~~-------~~~~~~~-~~--~~~~~~~~~~l~i~~~~~~~~g~y~C   66 (83)
                      .|..++|.|.......+   .+.|++  .+.....       ....... ..  ..........|.|.+++.+|.+.|.|
T Consensus        13 ~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   92 (118)
T d1i8lc_          13 SRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGLYIC   92 (118)
T ss_dssp             SSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGCEEEEE
T ss_pred             CCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCCEEEEE
Confidence            57889999997543322   588997  2221110       0000000 00  00112224579999999999999999


Q ss_pred             EeeC
Q psy11826         67 VADN   70 (83)
Q Consensus        67 ~~~~   70 (83)
                      .+..
T Consensus        93 a~~~   96 (118)
T d1i8lc_          93 KVEL   96 (118)
T ss_dssp             EEEE
T ss_pred             eEec
Confidence            7653

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=0.0001  Score=31.88  Aligned_cols=70  Identities=14%  Similarity=0.307  Sum_probs=42.2

Q ss_pred             CceEEEEeEeCcc-CCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCc
Q psy11826          3 GRKITFFCMAEGF-PRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFA   73 (83)
Q Consensus         3 g~~~~~~C~~~~~-~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g   73 (83)
                      ++.+.|.|.+.++ |..  .+.|.+++....... .......++.+...+.|.|..........|.|.+.....
T Consensus        19 ~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~-~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          19 SDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVN-FPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSN   91 (102)
T ss_dssp             CSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEE-CCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred             CCcEEEEEEEEcccCCCcEEEEEccCCCcCceeE-eeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCC
Confidence            5678999999996 443  356766664332211 011111123344566788877776667789999986543

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.86  E-value=0.00012  Score=32.41  Aligned_cols=66  Identities=21%  Similarity=0.408  Sum_probs=39.8

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEec-------cc----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIELT-------FH----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~~-------~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+++.|.+.|..  .-.+.|++  .|..+.       ..          .++.+..  +.+.. ...|.|..++.+
T Consensus        13 kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~--D~s~~-t~~L~i~~l~~e   89 (115)
T d1f3dh1          13 KPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTV--DKSSS-TAFMHLNSLTFE   89 (115)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEE--ETTTT-EEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEee--ccCce-eeEeeeeecCcC
Confidence            3588999999987653  34577875  332211       00          1122211  11111 346999999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |...|.|-..
T Consensus        90 DtAvYYCAr~   99 (115)
T d1f3dh1          90 DSAVYYCAND   99 (115)
T ss_dssp             GCEEEEEEEC
T ss_pred             CcEEEEEecc
Confidence            9999999543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.85  E-value=0.00013  Score=32.41  Aligned_cols=67  Identities=16%  Similarity=0.363  Sum_probs=40.4

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEE------ec-c----------cceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIE------LT-F----------HKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~------~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+++.|.+.|..  .-.+.|++  .|..      +. .          ..++.+..  + .......|.+..++.+
T Consensus        13 kpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSr--D-~s~nt~yL~m~~L~~e   89 (117)
T d1jpth1          13 QPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISA--D-NSKNTAYLQMNSLRAE   89 (117)
T ss_dssp             CTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEE--E-GGGTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEe--c-cccceEEecccccCCC
Confidence            3588999999998754  33577875  2211      11 1          11222222  1 1122346899999999


Q ss_pred             CCeEEEEEeeC
Q psy11826         60 DAGYYECVADN   70 (83)
Q Consensus        60 ~~g~y~C~~~~   70 (83)
                      |.+.|.|-...
T Consensus        90 DTAvYYCAr~~  100 (117)
T d1jpth1          90 DTAVYYCARDT  100 (117)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CceEEEEeecC
Confidence            99999996543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.83  E-value=0.00013  Score=31.71  Aligned_cols=65  Identities=18%  Similarity=0.350  Sum_probs=35.1

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEe--CCEEec------c-----------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTK--DDIELT------F-----------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~~------~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.++|.|.+.|..  .-.+.|++  .|..+.      .           ..++.+..   +.......|.+..++.+|
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~---D~s~~t~~L~~~sL~~eD   77 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTV---DKPSSTAYMQLSSLTSED   77 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC-------CEEEEEECCC---C
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEec---cccccEEEeeeeeccccc
Confidence            478999999998754  33578875  232211      0           01111111   111223469999999999


Q ss_pred             CeEEEEEee
Q psy11826         61 AGYYECVAD   69 (83)
Q Consensus        61 ~g~y~C~~~   69 (83)
                      ...|.|-..
T Consensus        78 TAvYYCAr~   86 (103)
T d1oari_          78 SAVYYCARM   86 (103)
T ss_dssp             CSEEEEEEE
T ss_pred             cEEEEeEEE
Confidence            999999653

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.82  E-value=0.00014  Score=32.36  Aligned_cols=65  Identities=15%  Similarity=0.339  Sum_probs=39.1

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEE------ec-c----------cceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIE------LT-F----------HKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~------~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+++.|.+.|..  .-.+.|++  .|..      +. .          ..++.+..  + .......|.+..++.+
T Consensus        13 kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisr--D-~s~~tvyL~~~~L~~e   89 (118)
T d1nlbh1          13 KPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSL--E-TSASTAYLQINSLKNE   89 (118)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEE--E-GGGTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEe--c-CCceeEEeeeeecccC
Confidence            3588999999988753  33577875  2211      11 1          11222221  1 1122346899999999


Q ss_pred             CCeEEEEEe
Q psy11826         60 DAGYYECVA   68 (83)
Q Consensus        60 ~~g~y~C~~   68 (83)
                      |.+.|.|-.
T Consensus        90 DtAvYYCAr   98 (118)
T d1nlbh1          90 DTATYFCAR   98 (118)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEee
Confidence            999999954

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.82  E-value=0.00012  Score=32.67  Aligned_cols=66  Identities=15%  Similarity=0.320  Sum_probs=40.1

Q ss_pred             CCCceEEEEeEeCccCC----CeEEEEe--CCEEec------cc----------ceEEEEEEecCCCeEEEEEEEccCCC
Q psy11826          1 MLGRKITFFCMAEGFPR----PHITWTK--DDIELT------FH----------KYFQVHEWFLGNNTIKSKMEIDPATQ   58 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~----~~~~w~~--~~~~~~------~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~   58 (83)
                      +.|+.++|.|.+.|...    -.+.|++  .|..+.      ..          .++.+..  +. ......|.|..++.
T Consensus        13 kPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSr--D~-s~n~~~L~~~sL~~   89 (120)
T d1ai1h1          13 KPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISR--DT-SLNKFFIQLISVTN   89 (120)
T ss_dssp             CSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEE--ET-TTTEEEEEESSCCG
T ss_pred             CCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceecc--cc-ccceeecceeeeec
Confidence            35889999999887532    2478876  222111      11          1222221  11 12234699999999


Q ss_pred             CCCeEEEEEee
Q psy11826         59 KDAGYYECVAD   69 (83)
Q Consensus        59 ~~~g~y~C~~~   69 (83)
                      +|.+.|.|-..
T Consensus        90 eDtAvYYCAr~  100 (120)
T d1ai1h1          90 EDTAMYYCSRE  100 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cceeEEEEEec
Confidence            99999999643

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.81  E-value=0.00015  Score=32.12  Aligned_cols=67  Identities=13%  Similarity=0.354  Sum_probs=40.8

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEe------cc----------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIEL------TF----------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      +.|+.+++.|.+.|..  .-.+.|++  .|..+      ..          ..++.+..   +.......|.+..++.+|
T Consensus        13 kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~---D~s~n~~~L~~~~l~~eD   89 (116)
T d1a2yb_          13 APSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISK---DNSKSQVFLKMNSLHTDD   89 (116)
T ss_dssp             CTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEE---EGGGTEEEEEECSCCGGG
T ss_pred             CCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEec---cCCCceEEcceeeeeecc
Confidence            3588999999988753  33577875  22211      10          11222222   111223469999999999


Q ss_pred             CeEEEEEeeC
Q psy11826         61 AGYYECVADN   70 (83)
Q Consensus        61 ~g~y~C~~~~   70 (83)
                      ...|.|-...
T Consensus        90 TAvYYCAr~~   99 (116)
T d1a2yb_          90 TARYYCARER   99 (116)
T ss_dssp             CEEEEEEEES
T ss_pred             ceEEEEEEeC
Confidence            9999997543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.81  E-value=0.00015  Score=32.01  Aligned_cols=66  Identities=17%  Similarity=0.391  Sum_probs=39.9

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEE------eccc-----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIE------LTFH-----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~------~~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.++|.|.+.|..  .-.+.|++  .|..      +...           .++.+..  + .......|.|..++.+
T Consensus        13 kpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSr--D-~s~nt~~L~~~~L~~e   89 (114)
T d1indh1          13 KPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISR--D-NAQNNLYLQLNSLRSE   89 (114)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEE--E-TTTTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEec--c-CccceeeeeeeeeccC
Confidence            3688999999987753  34577775  2211      1110           1222221  1 1122345999999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |...|.|-..
T Consensus        90 DtAvYYCA~~   99 (114)
T d1indh1          90 DTALYFCASH   99 (114)
T ss_dssp             GCEEEEEECG
T ss_pred             cccEEEECCC
Confidence            9999999643

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.81  E-value=2e-07  Score=40.28  Aligned_cols=68  Identities=19%  Similarity=0.315  Sum_probs=41.1

Q ss_pred             CCceEEEEeEeCccCCCeEEEEe--CCEEeccc------------ceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEE
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTK--DDIELTFH------------KYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECV   67 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~--~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~   67 (83)
                      +|+.++|.|.... ....+.|++  .+..+...            .++..   ..........|.|.+++.+|++.|.|-
T Consensus         7 eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~---~~~~~~~~~~L~I~~~~~~Dsa~YyCA   82 (96)
T d1ymmd1           7 EGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRV---TLDTSKKSSSLLITASRAADTASYFCA   82 (96)
T ss_dssp             SCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCB---CCBGGGTBCCBCCSSCCSTTCSCCEEE
T ss_pred             CCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceeccccccccee---eccCcceecccCcCCCCcccCEEEeEe
Confidence            6899999998643 345789987  23222110            00100   001111234699999999999999997


Q ss_pred             eeCCCc
Q psy11826         68 ADNPFA   73 (83)
Q Consensus        68 ~~~~~g   73 (83)
                      +....|
T Consensus        83 ~~~~~g   88 (96)
T d1ymmd1          83 TDTTSG   88 (96)
T ss_dssp             EEETTS
T ss_pred             EecCCC
Confidence            765444

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.78  E-value=0.00018  Score=31.96  Aligned_cols=66  Identities=14%  Similarity=0.305  Sum_probs=40.2

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEe------c-cc----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIEL------T-FH----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~-~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+.+.|.+.|..  .-.+.|++  .|..+      . ..          .++.+..  + ......-|.+.+++.+
T Consensus        13 kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~--D-~s~~t~yLq~~~L~~e   89 (117)
T d1jnhb1          13 RPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTA--D-RSSSIVYLQLNSLTSE   89 (117)
T ss_dssp             CTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEE--E-TTTTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEec--c-CccceeeecccccCCC
Confidence            3588999999998754  33578876  22211      1 10          1222221  1 1122346899999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |...|.|-..
T Consensus        90 DTAvYYCAr~   99 (117)
T d1jnhb1          90 DSAVYSCSRG   99 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999653

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.78  E-value=0.00018  Score=31.97  Aligned_cols=66  Identities=17%  Similarity=0.330  Sum_probs=40.4

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEe------c-cc----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIEL------T-FH----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~-~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.++|.|.+.|..  .-.+.|++  .|..+      . ..          .++.+..  +. ......|.|..++.+
T Consensus        12 kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~--D~-s~~t~~L~m~sL~~e   88 (117)
T d1um5h1          12 KPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTS--DK-SSNTAYLELSSLTSE   88 (117)
T ss_dssp             CTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEE--ET-TTTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEe--cc-CceeEeecccccCCC
Confidence            3588999999998754  33578876  22211      1 11          1122211  11 122346999999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |...|.|-..
T Consensus        89 DtAvYYCAr~   98 (117)
T d1um5h1          89 DSAVYYCARS   98 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999643

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.78  E-value=0.00018  Score=32.03  Aligned_cols=66  Identities=12%  Similarity=0.334  Sum_probs=40.1

Q ss_pred             CCCceEEEEeEeCccCCC---eEEEEe--CCEEec------cc----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFPRP---HITWTK--DDIELT------FH----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~~---~~~w~~--~~~~~~------~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+.|.|.+.|..-.   .+.|++  .|..+.      ..          .++.+..  +. ......|.+..++.+
T Consensus        13 kPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~--D~-s~nt~~L~~~sL~~e   89 (119)
T d1ncwh1          13 KPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITR--DT-SKNQFFLQLNSVTTE   89 (119)
T ss_dssp             CTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEE--ET-TTTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEec--cc-ccceeeccccccccC
Confidence            358899999999886532   367875  332211      10          1122221  11 111346999999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |...|.|-..
T Consensus        90 DTAvYYCAr~   99 (119)
T d1ncwh1          90 DTATYYCAGL   99 (119)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEeEe
Confidence            9999999543

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.77  E-value=0.00017  Score=32.38  Aligned_cols=66  Identities=21%  Similarity=0.353  Sum_probs=39.6

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEe-------cc----------cceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIEL-------TF----------HKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~-------~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.++|.|.+.|..  .-.+.|++  .|..+       ..          ..++.+..  +. ......|.|..++.+
T Consensus        13 kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~--D~-s~n~vyL~l~sL~~e   89 (125)
T d1rihh1          13 KPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTA--DR-SSNTAFMYLNSLTSE   89 (125)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEE--ET-TTTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEec--cc-CcceEeeeeeccCcc
Confidence            3688999999987753  23467765  22211       01          01222222  11 122346899999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |...|.|-..
T Consensus        90 DtAvYYCAR~   99 (125)
T d1rihh1          90 DSAVYYCARE   99 (125)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeee
Confidence            9999999644

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.77  E-value=1.1e-05  Score=35.51  Aligned_cols=69  Identities=19%  Similarity=0.265  Sum_probs=39.4

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CEEec------ccceEEEE----E-EecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DIELT------FHKYFQVH----E-WFLGNNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~~~~------~~~~~~~~----~-~~~~~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      +|+.++|.|.... ....+.|++.  +..+.      ........    . ...........|.|..++.+|++.|.|-+
T Consensus        12 ~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~   90 (112)
T d2cdeb1          12 TGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQYLCAS   90 (112)
T ss_dssp             TTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCSEEEEEE
T ss_pred             CCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccccccEEEEE
Confidence            5889999998643 3457899972  22110      00000000    0 00001112346899999999999999977


Q ss_pred             eCC
Q psy11826         69 DNP   71 (83)
Q Consensus        69 ~~~   71 (83)
                      ...
T Consensus        91 ~~~   93 (112)
T d2cdeb1          91 SEN   93 (112)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            643

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.76  E-value=0.00018  Score=32.04  Aligned_cols=66  Identities=20%  Similarity=0.345  Sum_probs=40.1

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEe------c-cc----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIEL------T-FH----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~-~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+.+.|.+.|..  .-.+.|++  .|..+      . ..          .++.+..  +.. .....|.+..++.+
T Consensus        13 kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSr--D~s-~nt~yLqm~sL~~e   89 (119)
T d1rz7h1          13 KPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITA--DTS-TDTGYLELSSLRSE   89 (119)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEE--ETT-TTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEec--ccC-ceEEEeeeeccCcc
Confidence            3588999999988754  33577875  22111      1 11          1222221  111 22346999999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |.+.|.|-..
T Consensus        90 DTAvYYCAr~   99 (119)
T d1rz7h1          90 DTAVYYCAAD   99 (119)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEeec
Confidence            9999999654

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.76  E-value=0.00022  Score=32.35  Aligned_cols=65  Identities=14%  Similarity=0.287  Sum_probs=39.5

Q ss_pred             CCceEEEEeEeCccC----CCeEEEEe--CCEEec------c----------cceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          2 LGRKITFFCMAEGFP----RPHITWTK--DDIELT------F----------HKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~----~~~~~w~~--~~~~~~------~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      .|+.+.|.|.+.|..    ...+.|++  .+..+.      .          ..++.+..  +.. .....|.|..++.+
T Consensus        14 pg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~--d~s-~~~~~L~i~~l~~e   90 (132)
T d1tjgh1          14 PTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITK--DTS-KNQVVLVMTRVSPV   90 (132)
T ss_dssp             TTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEE--ETT-TTEEEEEECSCCGG
T ss_pred             CCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecc--ccc-ccEEEcccccCCcc
Confidence            588999999987653    23588986  221110      0          01122211  111 12346999999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |...|.|-..
T Consensus        91 DtAvYYCAr~  100 (132)
T d1tjgh1          91 DTATYFCAHR  100 (132)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEEEe
Confidence            9999999654

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.75  E-value=0.0002  Score=31.95  Aligned_cols=65  Identities=18%  Similarity=0.381  Sum_probs=39.9

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEe--CCEEec-------cc----------ceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTK--DDIELT-------FH----------KYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~~-------~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+++.|.+.|..  .-.+.|++  .|..+.       ..          .++.+..  +.+ .....|.|..++.+|
T Consensus        14 pG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~--d~s-~n~v~L~i~~l~~eD   90 (120)
T d1pg7x1          14 PGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTV--DRS-STTAYIELVRLTSND   90 (120)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEE--ETT-TTEEEEEECSCCGGG
T ss_pred             CCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeee--ccC-cceEEccccccCCCc
Confidence            588999999987653  34578876  232111       00          1122211  111 223469999999999


Q ss_pred             CeEEEEEee
Q psy11826         61 AGYYECVAD   69 (83)
Q Consensus        61 ~g~y~C~~~   69 (83)
                      ...|.|-..
T Consensus        91 tA~YYCAr~   99 (120)
T d1pg7x1          91 SAVYYCARE   99 (120)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeeec
Confidence            999999754

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.75  E-value=0.00017  Score=32.05  Aligned_cols=67  Identities=18%  Similarity=0.355  Sum_probs=40.8

Q ss_pred             CCCceEEEEeEeCccCC--CeEEEEe--CCEEe------c-cc----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFPR--PHITWTK--DDIEL------T-FH----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~--~~~~w~~--~~~~~------~-~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+.|.|.+.|..-  -.+.|++  .|..+      . ..          .++.+..   +.......|.+..++.+
T Consensus        13 kpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSr---D~s~nt~~L~~~sL~~e   89 (118)
T d2fbjh1          13 QPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISR---DNAKNSLYLQMSKVRSE   89 (118)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEE---CSSSCEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEee---cCccceeeccccccCCC
Confidence            36899999999887543  3567775  22111      1 10          1122221   12222346999999999


Q ss_pred             CCeEEEEEeeC
Q psy11826         60 DAGYYECVADN   70 (83)
Q Consensus        60 ~~g~y~C~~~~   70 (83)
                      |...|.|-...
T Consensus        90 DtAvYYCAr~~  100 (118)
T d2fbjh1          90 DTALYYCARLH  100 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEeeEec
Confidence            99999997644

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.75  E-value=4.6e-05  Score=32.85  Aligned_cols=66  Identities=18%  Similarity=0.134  Sum_probs=37.8

Q ss_pred             ceEEEEeEeCccCCC--eEEEEeCCEEeccc----c-eEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          4 RKITFFCMAEGFPRP--HITWTKDDIELTFH----K-YFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         4 ~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      ..+.|.|.+.|+.+.  .|.|.+++..+...    . .....+..++.+...+.|.+.   ..+...|.|.+....
T Consensus        15 ~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ytC~V~H~s   87 (98)
T d1u58a1          15 GGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVD---GGLEHVYSCRVKGIA   87 (98)
T ss_dssp             SCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEEC---TTCGGGEEEEEEEGG
T ss_pred             CcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEEC---CCCCCEEEEEEEeCC
Confidence            467899999997654  47899987544321    1 111111122233344556654   344567999997543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.74  E-value=0.0002  Score=31.91  Aligned_cols=65  Identities=20%  Similarity=0.356  Sum_probs=39.5

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEe------cc-c----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIEL------TF-H----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~~-~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+++.|.+.|..  .-.+.|++  .|..+      .. .          .++.+..  +. ......|.|..++.+
T Consensus        13 kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSr--D~-s~nt~~L~~~sL~~e   89 (119)
T d1eapb1          13 KPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTA--DQ-SSSTAYMQLNSLTSE   89 (119)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEE--EG-GGTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEc--cc-CcceEEeeeecccCC
Confidence            3588999999988754  33577875  22211      11 0          1222221  11 111346999999999


Q ss_pred             CCeEEEEEe
Q psy11826         60 DAGYYECVA   68 (83)
Q Consensus        60 ~~g~y~C~~   68 (83)
                      |...|.|-.
T Consensus        90 DTAvYYCAr   98 (119)
T d1eapb1          90 DSAVYFCKR   98 (119)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEEE
Confidence            999999954

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.72  E-value=0.00024  Score=31.48  Aligned_cols=65  Identities=20%  Similarity=0.334  Sum_probs=39.1

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEe------c-cc----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIEL------T-FH----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~-~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+.+.|.+.|..  .-.+.|++  .|..+      . ..          .++.+..  +. ......|.+..++.+
T Consensus        13 kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~--D~-s~~tvyL~~~sL~~e   89 (116)
T d1mjuh1          13 KPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTV--DT-SSSTAYMQLSSLTSD   89 (116)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEE--ET-TTTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEec--cc-ccceeEecccccCCC
Confidence            3588999999988753  33567765  22111      0 11          1222222  11 122346889999999


Q ss_pred             CCeEEEEEe
Q psy11826         60 DAGYYECVA   68 (83)
Q Consensus        60 ~~g~y~C~~   68 (83)
                      |.+.|.|-.
T Consensus        90 DtAvYYCAr   98 (116)
T d1mjuh1          90 DSAVYYCAN   98 (116)
T ss_dssp             GCEEEEEEE
T ss_pred             CceEEEEcc
Confidence            999999954

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.70  E-value=0.00027  Score=31.64  Aligned_cols=67  Identities=16%  Similarity=0.395  Sum_probs=40.1

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEE------ec-c----------cceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIE------LT-F----------HKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~------~~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.++|.|.+.|..  .-.+.|++  .|..      +. .          ..++.+..  +. ......|.|..++.+
T Consensus        13 kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~--D~-s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          13 QPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISR--DN-AKNTLYLQMSSLKSE   89 (123)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEE--EG-GGTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEe--cC-cccccccceeeeccC
Confidence            3589999999987753  33567765  2211      11 0          11222222  11 112346999999999


Q ss_pred             CCeEEEEEeeC
Q psy11826         60 DAGYYECVADN   70 (83)
Q Consensus        60 ~~g~y~C~~~~   70 (83)
                      |...|.|-...
T Consensus        90 DtAvYYCAr~~  100 (123)
T d1mqkh_          90 DTAMYYCVRHE  100 (123)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cccceeEEecC
Confidence            99999996543

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.70  E-value=0.00011  Score=32.20  Aligned_cols=66  Identities=17%  Similarity=0.362  Sum_probs=39.0

Q ss_pred             CCCceEEEEeEeCcc--CCCeEEEEe--CCEEe------ccc----------ceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          1 MLGRKITFFCMAEGF--PRPHITWTK--DDIEL------TFH----------KYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~--~~~~~~w~~--~~~~~------~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      +.|+.+.|.|.+.|.  ..-.+.|++  .|..+      ...          .++.+..   +.......|.|..++.+|
T Consensus         6 kPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSr---d~s~n~~~L~i~~l~~eD   82 (107)
T d1sjva_           6 QAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISR---DNAKKTVYLEMNSLEPED   82 (107)
T ss_dssp             CTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEE---CTTTCCEEEEECSCCGGG
T ss_pred             cCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEec---CCceeEEEEeecCCCccc
Confidence            368999999998774  334577876  22111      100          1222221   122223469999999999


Q ss_pred             CeEEEEEee
Q psy11826         61 AGYYECVAD   69 (83)
Q Consensus        61 ~g~y~C~~~   69 (83)
                      ...|.|-..
T Consensus        83 tAvYyCA~~   91 (107)
T d1sjva_          83 TAVYYCYTH   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             ceeeeEecc
Confidence            999999654

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.70  E-value=0.00026  Score=31.52  Aligned_cols=65  Identities=18%  Similarity=0.399  Sum_probs=40.4

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEe--CCEEe------cc----------cceEEEEEEecCCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTK--DDIEL------TF----------HKYFQVHEWFLGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   61 (83)
                      .|+.+.|.|.+.|..  .-.+.|++  .|..+      ..          ..++.+..   +.......|.|..++.+|.
T Consensus        13 Pg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~---D~s~~~~~L~i~~L~~eDt   89 (119)
T d1kxvc_          13 AGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQ---GNAKNTAYLQMDSLKPDDT   89 (119)
T ss_dssp             TTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEE---CSSTTEEEEEECSCCGGGC
T ss_pred             CCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEec---ccCCcceecccccCCcCCc
Confidence            588999999988754  33578876  22111      10          01222221   2222245799999999999


Q ss_pred             eEEEEEee
Q psy11826         62 GYYECVAD   69 (83)
Q Consensus        62 g~y~C~~~   69 (83)
                      ..|.|-..
T Consensus        90 A~YYCAr~   97 (119)
T d1kxvc_          90 AMYYCKPS   97 (119)
T ss_dssp             EEEEEEEE
T ss_pred             ceEeeeec
Confidence            99999654

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.70  E-value=0.00027  Score=31.58  Aligned_cols=66  Identities=18%  Similarity=0.346  Sum_probs=39.6

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEec-------cc----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIELT-------FH----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~~-------~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.++|.|.+.|..  .-.+.|++  .|..+.       ..          .++.+..  +. ......|.|.+++.+
T Consensus        13 kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~--D~-s~~t~~L~i~~L~~e   89 (121)
T d1j05b_          13 EPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITA--DT-SSNTAYLQLTSLTSE   89 (121)
T ss_dssp             CTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEE--EG-GGTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEe--ec-CCceeeecccccCcC
Confidence            3589999999987643  34678876  232111       00          0111111  11 111245999999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |...|.|-..
T Consensus        90 DtAvYYCAr~   99 (121)
T d1j05b_          90 DTAVYYCAPF   99 (121)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEeEee
Confidence            9999999654

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.69  E-value=0.00027  Score=31.38  Aligned_cols=68  Identities=18%  Similarity=0.362  Sum_probs=41.0

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEe------c-c----------cceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIEL------T-F----------HKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+++.|.+.|+.  .-.+.|++  .|..+      . .          ..++.+..  + .......|.|..++.+
T Consensus        13 kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~--D-~s~~t~~L~i~~L~~e   89 (117)
T d1iqdb1          13 KPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTA--D-TSTNIAYMELSSLRSD   89 (117)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEE--E-TTTTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeec--c-cccceEEEeecccCcC
Confidence            3588999999988753  33467775  22211      0 0          11122221  1 1122346999999999


Q ss_pred             CCeEEEEEeeCC
Q psy11826         60 DAGYYECVADNP   71 (83)
Q Consensus        60 ~~g~y~C~~~~~   71 (83)
                      |...|.|-....
T Consensus        90 DtAvYYCA~~~~  101 (117)
T d1iqdb1          90 DTAVYYCAVPDP  101 (117)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cceEEEEeEcCC
Confidence            999999976543

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.69  E-value=0.00027  Score=31.40  Aligned_cols=65  Identities=17%  Similarity=0.376  Sum_probs=39.2

Q ss_pred             CCCceEEEEeEeCccCC--CeEEEEe--CCEE------ec-cc----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFPR--PHITWTK--DDIE------LT-FH----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~--~~~~w~~--~~~~------~~-~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+.+.|.+.|..-  -.+.|++  .|..      +. ..          .++.+..   +.......|.+..++.+
T Consensus        13 kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~---D~s~~t~~L~~~sL~~e   89 (118)
T d2jelh1          13 RPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTV---DKSSSTAYMELARLTSE   89 (118)
T ss_dssp             CTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEE---EGGGTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEec---ccCcceEeecccccccC
Confidence            36889999999887543  3577875  2221      11 00          1222221   11122346999999999


Q ss_pred             CCeEEEEEe
Q psy11826         60 DAGYYECVA   68 (83)
Q Consensus        60 ~~g~y~C~~   68 (83)
                      |...|.|-.
T Consensus        90 DTAvYYCAr   98 (118)
T d2jelh1          90 DSAIYYCAR   98 (118)
T ss_dssp             GCEEEEEEE
T ss_pred             cceeeeEEE
Confidence            999999943

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=0.00022  Score=29.99  Aligned_cols=58  Identities=17%  Similarity=0.514  Sum_probs=38.6

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecccce---EEEEEEecCCCeEEEEEEEccCCC-CCCeEEEEEeeC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTFHKY---FQVHEWFLGNNTIKSKMEIDPATQ-KDAGYYECVADN   70 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~-~~~g~y~C~~~~   70 (83)
                      .|..+.+.|+.  .....|.|.+++..+.....   ....         ...|.+..-+. +++|.|.|.+..
T Consensus         9 SGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~~~~~~---------~~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           9 SGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSD---------EDHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             ETTEEEEECSS--CTTSCEEEEETTEEESSSCSCTTEEEE---------TTEEEETTCCHHHHCEEEEEEETT
T ss_pred             eCCEEEEECCC--CCCCceeeeeccccccCCCcccccccc---------cceEEecccCccccCceEEEEcCC
Confidence            37889999973  34567999999988775421   1110         11466666554 578999998854

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.67  E-value=0.00027  Score=30.97  Aligned_cols=66  Identities=18%  Similarity=0.406  Sum_probs=39.9

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEe------cc-------------cceEEEEEEecCCCeEEEEEEEccCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIEL------TF-------------HKYFQVHEWFLGNNTIKSKMEIDPAT   57 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~   57 (83)
                      +.|+.++|.|.+.|..  .-.+.|++  .|..+      ..             ..++.+..  + .......|.|..++
T Consensus        13 kPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~--D-~s~~t~~L~i~sL~   89 (109)
T d2ck0h1          13 QPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISR--D-DSQSMLYLQMNNLK   89 (109)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEE--E-TTTTEEEEEECSCC
T ss_pred             CCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceecc--c-cccceeEecccCCC
Confidence            3688999999988753  33577875  22111      10             01222221  1 11223469999999


Q ss_pred             CCCCeEEEEEee
Q psy11826         58 QKDAGYYECVAD   69 (83)
Q Consensus        58 ~~~~g~y~C~~~   69 (83)
                      .+|.+.|.|-..
T Consensus        90 ~eDTAvYYCAr~  101 (109)
T d2ck0h1          90 TEDTGIYYCVRG  101 (109)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             HhHCEEEEEEEc
Confidence            999999999643

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.67  E-value=8.4e-05  Score=33.39  Aligned_cols=68  Identities=16%  Similarity=0.325  Sum_probs=41.1

Q ss_pred             ceEEEEeEeCccCCC--eEEEEeCCEEecccceEE---EEE---EecCCCeEEEEEEEccCCCCCC-eEEEEEeeCC
Q psy11826          4 RKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQ---VHE---WFLGNNTIKSKMEIDPATQKDA-GYYECVADNP   71 (83)
Q Consensus         4 ~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~l~i~~~~~~~~-g~y~C~~~~~   71 (83)
                      +.++|.|.+.++.+.  .+.|+++|..+.......   ...   ..+..+...+.|.+......+. ..|.|.+...
T Consensus        21 ~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H~   97 (127)
T d1ogae2          21 QKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFY   97 (127)
T ss_dssp             SEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred             CcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEEC
Confidence            567899999886543  589999998775421110   000   0011233456788776665554 5799999754

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.65  E-value=4.3e-05  Score=33.92  Aligned_cols=66  Identities=14%  Similarity=0.409  Sum_probs=39.8

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEe--CCEEec------ccc----------eEEEEEEecCCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTK--DDIELT------FHK----------YFQVHEWFLGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~~------~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~~~   61 (83)
                      .|+.++|.|.+.|..  .-.+.|++  .|..+.      ...          ++.+..   +.......|.+..++.+|.
T Consensus        14 Pg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~---D~s~~tv~L~~~~L~~eDT   90 (116)
T d1fn4b1          14 PSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISR---DTSKNQVFLKMNSLQTDDT   90 (116)
T ss_dssp             TTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEE---EGGGTEEECCEESCCCCCC
T ss_pred             CCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEcc---ccccchhhcceeccCCCCC
Confidence            588999999998753  33577876  332211      111          111111   1111234588899999999


Q ss_pred             eEEEEEeeC
Q psy11826         62 GYYECVADN   70 (83)
Q Consensus        62 g~y~C~~~~   70 (83)
                      ..|.|-...
T Consensus        91 AvYyCAr~~   99 (116)
T d1fn4b1          91 GTYYCTRDL   99 (116)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEeec
Confidence            999996543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.65  E-value=0.00034  Score=31.34  Aligned_cols=65  Identities=15%  Similarity=0.359  Sum_probs=38.8

Q ss_pred             CCceEEEEeEeCccC--C--CeEEEEe--CCEEec------cc----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          2 LGRKITFFCMAEGFP--R--PHITWTK--DDIELT------FH----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~--~~~~w~~--~~~~~~------~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      .|+.++|.|.+.|..  .  -.+.|++  .+..+.      ..          .++.+..  + .......|.|..++.+
T Consensus        14 pg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~--D-~s~~~~~L~i~sl~~e   90 (123)
T d1r0ah1          14 PSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSK--D-TSNNQAFLNMMTVETA   90 (123)
T ss_dssp             TTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEE--E-GGGTEEEEEECSCCGG
T ss_pred             CCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccc--c-ccceeEEcceeecccc
Confidence            588999999987643  2  2467875  222111      00          1122211  1 1111346999999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |...|.|-..
T Consensus        91 DsAvYyCAr~  100 (123)
T d1r0ah1          91 DTAIYYCAQS  100 (123)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEeeccc
Confidence            9999999643

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.63  E-value=0.00011  Score=33.13  Aligned_cols=66  Identities=21%  Similarity=0.384  Sum_probs=40.1

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEeC--CEEecc-----------c-----------ceEEEEEEecCCCeEEEEEEEc
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTKD--DIELTF-----------H-----------KYFQVHEWFLGNNTIKSKMEID   54 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~~--~~~~~~-----------~-----------~~~~~~~~~~~~~~~~~~l~i~   54 (83)
                      +.|+.++|.|.+.|..  .-.+.|++.  |..+.-           .           .++.+..  + .......|.|.
T Consensus        13 kpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~--d-~s~~~~~L~i~   89 (127)
T d1i3ua_          13 QAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSR--D-NAKNTVNLQMN   89 (127)
T ss_dssp             CTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEE--E-GGGTEEEEEEC
T ss_pred             CCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEec--c-CCceEEEEeee
Confidence            3589999999988753  345788862  211100           0           0111111  1 11123469999


Q ss_pred             cCCCCCCeEEEEEee
Q psy11826         55 PATQKDAGYYECVAD   69 (83)
Q Consensus        55 ~~~~~~~g~y~C~~~   69 (83)
                      +++.+|...|.|-..
T Consensus        90 ~l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          90 SLKPEDTAVYYCAAK  104 (127)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             cccccceeEEEEEEE
Confidence            999999999999754

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.62  E-value=0.00037  Score=30.94  Aligned_cols=64  Identities=22%  Similarity=0.411  Sum_probs=38.7

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEe--CCEEec-------cc----------ceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTK--DDIELT-------FH----------KYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~~-------~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.++|.|.+.|..  .-.+.|++  .|..+.       ..          .++.+..  +. ......|.|..++.+|
T Consensus        14 PG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~--D~-s~~~~~L~i~~L~~eD   90 (117)
T d1mfah1          14 PGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTA--VT-STTTAYMELSSLTSED   90 (117)
T ss_dssp             TTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEE--ET-TTTEEEEEECSCCGGG
T ss_pred             CCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEc--cc-CccEeEeeecccCCCc
Confidence            588999999988753  34567765  332111       00          1112211  11 1223469999999999


Q ss_pred             CeEEEEEe
Q psy11826         61 AGYYECVA   68 (83)
Q Consensus        61 ~g~y~C~~   68 (83)
                      ...|.|-.
T Consensus        91 tAvYYCAr   98 (117)
T d1mfah1          91 SAVYYCTR   98 (117)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEec
Confidence            99999954

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.61  E-value=0.00039  Score=31.13  Aligned_cols=66  Identities=17%  Similarity=0.261  Sum_probs=39.9

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEe------c-c----------cceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIEL------T-F----------HKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+.+.|.+.|..  .-.+.|++  .|..+      . .          ..++.+..  +. .....-|.+..++.+
T Consensus        13 kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~--D~-s~~t~~L~~~sL~~e   89 (124)
T d1yedb1          13 RPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTA--DK-SSSTAYMQLSSLKSE   89 (124)
T ss_dssp             CTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEE--ET-TTTEEEEEEESCCGG
T ss_pred             CCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEc--cC-CcceEEecccccCCC
Confidence            3588999999988753  33577765  22111      1 0          11222222  11 122346899999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |...|.|-..
T Consensus        90 DTAvYYCAR~   99 (124)
T d1yedb1          90 DSAVYFCTRW   99 (124)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEeccc
Confidence            9999999654

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.61  E-value=0.0004  Score=31.23  Aligned_cols=64  Identities=16%  Similarity=0.391  Sum_probs=38.4

Q ss_pred             CCceEEEEeEeCccC----CCeEEEEe--CCEEec------cc----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          2 LGRKITFFCMAEGFP----RPHITWTK--DDIELT------FH----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~----~~~~~w~~--~~~~~~------~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      .|+.++|.|.+.|..    ...+.|++  .+..+.      ..          .++.+..  + .......|.|..++.+
T Consensus        14 Pg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~--d-~s~~t~~L~i~~l~~e   90 (126)
T d1etzb1          14 PSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSK--D-TSSNQVFLKITSVDTS   90 (126)
T ss_dssp             TTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEE--E-TTTTEEEEEECSCCGG
T ss_pred             CCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEec--c-cCCcEEEcceeccccc
Confidence            588999999987642    22467875  222111      00          1122211  1 1112346999999999


Q ss_pred             CCeEEEEEe
Q psy11826         60 DAGYYECVA   68 (83)
Q Consensus        60 ~~g~y~C~~   68 (83)
                      |...|.|-.
T Consensus        91 DtAvYyCAr   99 (126)
T d1etzb1          91 DTATYHCAR   99 (126)
T ss_dssp             GCEEEEEEE
T ss_pred             ccceEEEEE
Confidence            999999964

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.61  E-value=0.00039  Score=30.97  Aligned_cols=66  Identities=20%  Similarity=0.331  Sum_probs=39.7

Q ss_pred             CCCceEEEEeEeCccCC--CeEEEEe--CCEEe------c-c----------cceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFPR--PHITWTK--DDIEL------T-F----------HKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~--~~~~w~~--~~~~~------~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+.+.|.+.|...  -.+.|.+  .|..+      . .          ..++.+..  +.. .....|.+..++.+
T Consensus        13 kpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~--D~s-~nt~~L~m~~L~~e   89 (120)
T d1ad9b1          13 KPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTV--DTS-TNTAYMELSSLRSE   89 (120)
T ss_dssp             CTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEE--ETT-TTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEe--cCc-ceEEeccccccCCC
Confidence            35889999999887532  3567765  22111      0 0          11222222  111 12346899999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |...|.|-..
T Consensus        90 DTAvYYCAr~   99 (120)
T d1ad9b1          90 DTAFYFCARE   99 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEEEc
Confidence            9999999653

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.61  E-value=0.00039  Score=31.27  Aligned_cols=65  Identities=17%  Similarity=0.372  Sum_probs=39.2

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEE------ec-cc----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIE------LT-FH----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~------~~-~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+++.|.+.|..  .-.+.|++  .|..      +. ..          .++.+..  + .......|.+..++.+
T Consensus        13 kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~--D-~s~nt~yL~~~~L~~e   89 (127)
T d1n0xh1          13 KPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTA--D-TSANTAYMELRSLRSA   89 (127)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEE--E-GGGTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEec--c-cCceEEEEEEEccCCC
Confidence            3588999999998753  23567775  2211      11 11          1222222  1 1112346899999999


Q ss_pred             CCeEEEEEe
Q psy11826         60 DAGYYECVA   68 (83)
Q Consensus        60 ~~g~y~C~~   68 (83)
                      |.+.|.|-.
T Consensus        90 DtAvYYCAR   98 (127)
T d1n0xh1          90 DTAVYYCAR   98 (127)
T ss_dssp             GCEEEEEEE
T ss_pred             CceEEEEEe
Confidence            999999963

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.61  E-value=0.0004  Score=31.06  Aligned_cols=66  Identities=17%  Similarity=0.332  Sum_probs=39.7

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEe--CCEEe------c-c----------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTK--DDIEL------T-F----------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.|.|.+.|..  .-.+.|++  .|..+      . .          ..++.+..  +. .....-|.+..++.+|
T Consensus        14 Pg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSr--D~-s~~t~yL~m~sL~~eD   90 (122)
T d1bz7b1          14 PGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISR--DN-PKNTLFLQMTSLRSED   90 (122)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEE--EG-GGTEEEEEECSCCGGG
T ss_pred             CCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEec--cC-CccEeEeeeeeecccC
Confidence            588999999988753  33577775  22111      1 0          01222221  11 1123468999999999


Q ss_pred             CeEEEEEeeC
Q psy11826         61 AGYYECVADN   70 (83)
Q Consensus        61 ~g~y~C~~~~   70 (83)
                      .+.|.|-...
T Consensus        91 TAvYYCAr~~  100 (122)
T d1bz7b1          91 TAIYYCTRGG  100 (122)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEeecCC
Confidence            9999996543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.60  E-value=0.00041  Score=31.11  Aligned_cols=65  Identities=20%  Similarity=0.397  Sum_probs=40.2

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEe--CCEE------ec-cc----------ceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTK--DDIE------LT-FH----------KYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~--~~~~------~~-~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.++|.|.+.|..  .-.+.|++  .+..      +. ..          .++.+..   +.......|.+..++.+|
T Consensus        13 pg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~---D~s~~t~yLq~~sL~~eD   89 (124)
T d1zvya1          13 AGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQ---DKAKNMAYLRMDSVKSED   89 (124)
T ss_dssp             TTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEE---EGGGTEEEEEECSCCGGG
T ss_pred             CCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEec---ccccceeeceeccccCCc
Confidence            588999999988754  34678876  2221      11 11          1122221   111223468999999999


Q ss_pred             CeEEEEEee
Q psy11826         61 AGYYECVAD   69 (83)
Q Consensus        61 ~g~y~C~~~   69 (83)
                      ...|.|-..
T Consensus        90 tAvYYCAr~   98 (124)
T d1zvya1          90 TAIYTCGAT   98 (124)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEeec
Confidence            999999654

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=6.2e-05  Score=32.59  Aligned_cols=71  Identities=11%  Similarity=0.238  Sum_probs=40.2

Q ss_pred             CceEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826          3 GRKITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      +..+.+.|.+.++.+.  .+.|..++..... .........++.+...+.|.+..-... ...|.|.+.......
T Consensus        20 ~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~-~t~~~~~~~~gtys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~   92 (103)
T d1c5ch2          20 GGTAALGCLVKDYFPEPVTVSWNSGALTSGV-HTFPAVLQSSGLYSLSSVVTVPSSSLG-TQTYICNVNHKPSNT   92 (103)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTE-EECCCEECTTSCEEEEEEEEEEGGGGG-TCCCEEEEEEGGGTE
T ss_pred             CCeEEEEEEEEeEeCCCeEEEECcCCCCCCE-EECCCeECCCCCEEEEEEEEECccccC-CCeEEEEEEeCCCCE
Confidence            4568899999886443  5899776643211 111111111222344566777655443 356999998765543

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.60  E-value=0.00042  Score=31.14  Aligned_cols=67  Identities=16%  Similarity=0.340  Sum_probs=39.6

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEe------ccc-----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIEL------TFH-----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+.|.|.+.|..  .-.+.|++  .|..+      ...           .++.+..   +......-|.|..++.+
T Consensus        12 kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~---D~s~~~~~L~i~~l~~e   88 (126)
T d1rjca1          12 QAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISL---DNAKNTLYLQMNSLKPE   88 (126)
T ss_dssp             CTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEE---EC--CEEEEEECSCCGG
T ss_pred             CCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEe---cCCceEEEEEEeccCcc
Confidence            3688999999988753  34578876  22211      100           1122211   11122345999999999


Q ss_pred             CCeEEEEEeeC
Q psy11826         60 DAGYYECVADN   70 (83)
Q Consensus        60 ~~g~y~C~~~~   70 (83)
                      |...|.|-...
T Consensus        89 DTAvYYCAr~~   99 (126)
T d1rjca1          89 DTAMYYCAADT   99 (126)
T ss_dssp             GCEEEEEEECC
T ss_pred             cCceeEEEeec
Confidence            99999997543

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=6.2e-05  Score=32.27  Aligned_cols=60  Identities=17%  Similarity=0.264  Sum_probs=37.5

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEecc-cceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELTF-HKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      .|++++|.|... .+.....+++++..... .....       .....+.+.|..++.+|+|.|.|...
T Consensus        17 ~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~-------~~~~~a~F~i~~v~~~~~G~Y~C~y~   77 (96)
T d1ugna1          17 QGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQ-------ELVKKGQFPIPSITWEHTGRYRCYYG   77 (96)
T ss_dssp             TTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCH-------HHHTTTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccC-------CCCCEEEEEEEecCHHHCCeEEEEEe
Confidence            589999999953 33445666776643221 00000       00002368899999999999999864

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.56  E-value=0.00048  Score=31.03  Aligned_cols=66  Identities=18%  Similarity=0.269  Sum_probs=39.6

Q ss_pred             CCCceEEEEeEeCccCC--CeEEEEe--CCEEe------c-c----------cceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFPR--PHITWTK--DDIEL------T-F----------HKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~--~~~~w~~--~~~~~------~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+.|.|.+.|..-  -.+.|++  .+..+      . .          ..++.+..  +.. ....-|.+..++.+
T Consensus        13 kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~--D~s-~~t~yL~~~sL~~e   89 (128)
T d2nxyd1          13 KPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITA--DKS-TSTVYLELRNLRSD   89 (128)
T ss_dssp             CTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEE--ETT-TTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEee--cCC-CceEEeeeeecccc
Confidence            36889999999887543  2466764  22111      0 0          11222222  121 22346899999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |.+.|.|-..
T Consensus        90 DTA~YYCAr~   99 (128)
T d2nxyd1          90 DTAVYFCAGV   99 (128)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEeEE
Confidence            9999999754

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.56  E-value=0.0005  Score=30.89  Aligned_cols=65  Identities=20%  Similarity=0.310  Sum_probs=39.7

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEe------c-c----------cceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIEL------T-F----------HKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+.|.|.+.|..  .-.+.|++  .|..+      . .          ..++.+..  +. ......|.+..++.+
T Consensus        12 kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~--D~-s~nt~yL~m~~L~~e   88 (126)
T d1lmka1          12 KPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTA--DT-SSNIAYMQLSSLTSE   88 (126)
T ss_dssp             CTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEE--ET-TTTEEEEEECSCCGG
T ss_pred             CCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEe--cC-CccEEEeeecccCCC
Confidence            3688999999988753  33467775  22111      1 1          11222221  11 122346999999999


Q ss_pred             CCeEEEEEe
Q psy11826         60 DAGYYECVA   68 (83)
Q Consensus        60 ~~g~y~C~~   68 (83)
                      |...|.|-.
T Consensus        89 DTAvYYCAr   97 (126)
T d1lmka1          89 DSAVYYCAR   97 (126)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEee
Confidence            999999964

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.55  E-value=0.00048  Score=30.52  Aligned_cols=67  Identities=13%  Similarity=0.257  Sum_probs=41.3

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEe--CCEEe------cc----------cceEEEEEEecCCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTK--DDIEL------TF----------HKYFQVHEWFLGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   61 (83)
                      .|+.++|.|.+.|..  .-.+.|++  .|..+      ..          ..++.+..  + .......|.|..++.+|.
T Consensus        14 Pg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~--D-~s~~~~~L~i~~L~~eDt   90 (116)
T d7fabh1          14 PSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLV--N-TSKNQFSLRLSSVTAADT   90 (116)
T ss_dssp             TTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEE--E-TTTTEEEEEECSCCGGGC
T ss_pred             CCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeec--c-cchhhhhccccccccccc
Confidence            588999999988753  34678876  22211      10          01122221  1 122245699999999999


Q ss_pred             eEEEEEeeCC
Q psy11826         62 GYYECVADNP   71 (83)
Q Consensus        62 g~y~C~~~~~   71 (83)
                      +.|.|-....
T Consensus        91 AvYyCAr~~~  100 (116)
T d7fabh1          91 AVYYCARNLI  100 (116)
T ss_dssp             EEEEEEEECS
T ss_pred             eEEEeeeecC
Confidence            9999975443

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.54  E-value=0.00049  Score=30.56  Aligned_cols=66  Identities=20%  Similarity=0.350  Sum_probs=39.8

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEe------c-c----------cceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIEL------T-F----------HKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+.|.|.+.|..  .-.+.|.+  .|..+      . .          ..++.+..   +.......|.|..++.+
T Consensus        13 kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~---D~s~~t~yL~i~~L~~e   89 (118)
T d1ct8b1          13 KPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTV---DTSSSTAYMQFSSLTTE   89 (118)
T ss_dssp             CTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEE---EGGGTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEe---cCccceEEecccccCCC
Confidence            3588999999988743  33567765  22211      0 0          11222222   11122346899999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |...|.|-..
T Consensus        90 DtAvYYCAr~   99 (118)
T d1ct8b1          90 DSAIYYCARY   99 (118)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeee
Confidence            9999999654

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.54  E-value=0.00053  Score=30.80  Aligned_cols=65  Identities=18%  Similarity=0.407  Sum_probs=39.3

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEe--CCEE------ec-cc----------ceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTK--DDIE------LT-FH----------KYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~--~~~~------~~-~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.++|.|.+.|..  .-.+.|++  .|..      +. ..          .++.+..  +. ......|.+..++.+|
T Consensus        14 Pg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~--D~-s~nt~~L~~~~L~~eD   90 (126)
T d1dfbh1          14 PGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISR--DN-AKNSLYLQMNSLRAED   90 (126)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEE--ET-TTTEEEEEECSCCGGG
T ss_pred             CCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEec--cC-CCcEEEeeeeeeccCc
Confidence            588999999988753  33577775  2211      11 10          1122221  11 1223468999999999


Q ss_pred             CeEEEEEee
Q psy11826         61 AGYYECVAD   69 (83)
Q Consensus        61 ~g~y~C~~~   69 (83)
                      ...|.|-..
T Consensus        91 tavYYCAr~   99 (126)
T d1dfbh1          91 MALYYCVKG   99 (126)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEEec
Confidence            999999643

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.54  E-value=4.8e-05  Score=33.51  Aligned_cols=68  Identities=18%  Similarity=0.381  Sum_probs=39.3

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeC--CEEecc-----cceEEEEEEecC------CCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKD--DIELTF-----HKYFQVHEWFLG------NNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~--~~~~~~-----~~~~~~~~~~~~------~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      +|+.++|.|.... ....+.|++.  +..+..     ............      .......|.|..++.+|++.|.|-+
T Consensus        15 ~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~   93 (113)
T d1nfdb1          15 KGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFCAS   93 (113)
T ss_dssp             TTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGCEEECEEE
T ss_pred             CCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCceeEEEEe
Confidence            5889999998543 3457999972  221110     000010000000      1112357999999999999999976


Q ss_pred             eC
Q psy11826         69 DN   70 (83)
Q Consensus        69 ~~   70 (83)
                      ..
T Consensus        94 ~~   95 (113)
T d1nfdb1          94 SL   95 (113)
T ss_dssp             ES
T ss_pred             ec
Confidence            53

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.54  E-value=0.00052  Score=30.66  Aligned_cols=66  Identities=17%  Similarity=0.334  Sum_probs=40.1

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEe------c-c----------cceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIEL------T-F----------HKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.++|.|.+.|..  .-.+.|++  .|..+      . .          ..++.+..  +.+ ....-|.+..++.+
T Consensus        14 kpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~--D~s-~ntvyL~~~~L~~e   90 (122)
T d1vgeh1          14 KPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTR--DTS-ATTAYMGLSSLRPE   90 (122)
T ss_dssp             CTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEE--ETT-TTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEec--cCC-cceeeecccccCCC
Confidence            3688999999998764  33577875  22111      0 0          01222222  111 12335899999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |...|.|-..
T Consensus        91 DtA~YYCAr~  100 (122)
T d1vgeh1          91 DTAVYYCARD  100 (122)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999654

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.53  E-value=0.00057  Score=30.85  Aligned_cols=66  Identities=20%  Similarity=0.289  Sum_probs=40.5

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEec-------cc----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIELT-------FH----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~~-------~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+.|.|.+.|..  .-.+.|++  .|..+.       ..          .++.+..  +.+ .....|.+..++.+
T Consensus        12 kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~--D~s-~~tv~L~~~~L~~e   88 (130)
T d1rhhb1          12 KPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTA--DQA-TSTAYMELTNLRSD   88 (130)
T ss_dssp             CTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEE--ETT-TTEEEEEECSCCGG
T ss_pred             CCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEec--cCC-ccEEEEEeeccCCC
Confidence            3588999999998753  33577875  222111       00          1222221  111 22346999999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |...|.|-..
T Consensus        89 DtAvYyCAr~   98 (130)
T d1rhhb1          89 DTAVYYCARD   98 (130)
T ss_dssp             GCEEEEEEEE
T ss_pred             CcEEEEEEee
Confidence            9999999654

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.52  E-value=0.00057  Score=30.73  Aligned_cols=66  Identities=18%  Similarity=0.361  Sum_probs=39.9

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEe------c-c----------cceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIEL------T-F----------HKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+.|.|.+.|..  .-.+.|++  .|..+      . .          ..++.+..  +. .....-|.+..++.+
T Consensus        13 kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSr--D~-s~~t~yL~~~sL~~e   89 (127)
T d2fx7h1          13 RPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITA--DR-STSTAYLELNSLRPE   89 (127)
T ss_dssp             CTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEE--ET-TTTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEec--cC-ccceEeeeecccCcc
Confidence            3588999999988753  33577875  22211      1 1          01222221  11 112346899999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |.+.|.|-..
T Consensus        90 DTavYYCAR~   99 (127)
T d2fx7h1          90 DTAVYYCARE   99 (127)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeec
Confidence            9999999654

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.51  E-value=0.00057  Score=30.50  Aligned_cols=66  Identities=18%  Similarity=0.395  Sum_probs=39.9

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEe------c-c----------cceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIEL------T-F----------HKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+.|.|.+.|..  .-.+.|++  .|..+      . .          ..++.+..  + .......|.|..++.+
T Consensus        13 kpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~--D-~s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          13 QPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISR--D-NSKNTLYLQMNSLRAE   89 (121)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEE--E-TTTTEEEEEECSCCGG
T ss_pred             CCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEec--c-ccceeEEeeeeecccc
Confidence            3689999999987753  33577875  22211      1 0          01222222  1 1122346999999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |...|.|-..
T Consensus        90 DtAvYYCAr~   99 (121)
T d1ol0a_          90 DTAVYYCARE   99 (121)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEEEe
Confidence            9999999654

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.51  E-value=0.0005  Score=30.92  Aligned_cols=64  Identities=13%  Similarity=0.313  Sum_probs=39.4

Q ss_pred             CCceEEEEeEeCccCC---CeEEEEe--CCEEec------ccc----------eEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFPR---PHITWTK--DDIELT------FHK----------YFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~---~~~~w~~--~~~~~~------~~~----------~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.|.|.+.|..-   -.+.|++  .|..+.      ...          ++.+..   +.......|.|..++.+|
T Consensus        14 Pg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~---d~s~nt~yL~l~~l~~eD   90 (127)
T d3cx5j1          14 PSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITR---DTSKNQFFLKLNSVTTED   90 (127)
T ss_dssp             TTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEE---ETTTTEEEEEECSCCGGG
T ss_pred             CCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeec---ccccceeecceecccccc
Confidence            5889999999887542   3578876  332221      000          111111   111223469999999999


Q ss_pred             CeEEEEEe
Q psy11826         61 AGYYECVA   68 (83)
Q Consensus        61 ~g~y~C~~   68 (83)
                      ...|.|-.
T Consensus        91 tAvYyCAr   98 (127)
T d3cx5j1          91 TATYYCAR   98 (127)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEeee
Confidence            99999964

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.51  E-value=0.00057  Score=30.42  Aligned_cols=66  Identities=20%  Similarity=0.371  Sum_probs=39.7

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEec-------c----------cceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIELT-------F----------HKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~~-------~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+++.|.+.|..  .-.+.|++  .|..+.       .          ..++.+..  +. ......|.|..++.+
T Consensus        13 kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~--d~-s~~~~~L~i~~L~~e   89 (119)
T d1qnzh_          13 KPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTV--EK-SSSTVYLEFSRLTSD   89 (119)
T ss_dssp             CTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEE--ET-TTTEEEEEEEEECGG
T ss_pred             CCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeec--cc-ccceeeeeecccCcc
Confidence            3588999999987643  33578876  332111       0          01122211  11 112346999999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |...|.|-..
T Consensus        90 DsAvYYCA~~   99 (119)
T d1qnzh_          90 DSAVYYCAIH   99 (119)
T ss_dssp             GCEEEEEEEC
T ss_pred             ceeEEEEEEe
Confidence            9999999654

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.50  E-value=0.00059  Score=30.48  Aligned_cols=67  Identities=16%  Similarity=0.359  Sum_probs=40.7

Q ss_pred             CCCceEEEEeEeCccCC--CeEEEEe--CCEEe------cc-c------------ceEEEEEEecCCCeEEEEEEEccCC
Q psy11826          1 MLGRKITFFCMAEGFPR--PHITWTK--DDIEL------TF-H------------KYFQVHEWFLGNNTIKSKMEIDPAT   57 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~--~~~~w~~--~~~~~------~~-~------------~~~~~~~~~~~~~~~~~~l~i~~~~   57 (83)
                      +.|+.+.|.|.+.|...  -.+.|++  .|..+      .. .            .++.+..  +... ....|.+..++
T Consensus        13 kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSr--D~s~-nt~~L~~~sL~   89 (122)
T d1q9rb1          13 QSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISR--DNSQ-SILYLQMNTLR   89 (122)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEE--ETTT-TEEEEEECSCC
T ss_pred             CCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeee--eccc-ceeccceeeec
Confidence            35889999999887543  3578875  22211      10 0            1122221  1121 13469999999


Q ss_pred             CCCCeEEEEEeeC
Q psy11826         58 QKDAGYYECVADN   70 (83)
Q Consensus        58 ~~~~g~y~C~~~~   70 (83)
                      .+|...|.|-...
T Consensus        90 ~eDTAvYYCar~~  102 (122)
T d1q9rb1          90 AEDSATYYCARDH  102 (122)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             cCcceEEEEEecC
Confidence            9999999997643

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.50  E-value=0.00064  Score=30.69  Aligned_cols=65  Identities=18%  Similarity=0.297  Sum_probs=39.3

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEe--CCEEe------ccc-----------ceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTK--DDIEL------TFH-----------KYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.++|.|.+.|..  .-.+.|++  .|..+      ...           .++.+..  +.+ .....|.+..++.+|
T Consensus        14 Pg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~--D~s-~~t~yL~~~sL~~eD   90 (130)
T d1rzga1          14 PGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITA--DES-TSTAYMELSSLRSED   90 (130)
T ss_dssp             TTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEE--ETT-TTEEEEEECSCCGGG
T ss_pred             CCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEec--ccc-cceEEeeeeecCCCc
Confidence            588999999988753  34577875  22211      100           1122221  111 123458899999999


Q ss_pred             CeEEEEEee
Q psy11826         61 AGYYECVAD   69 (83)
Q Consensus        61 ~g~y~C~~~   69 (83)
                      ...|.|-..
T Consensus        91 tA~YYCAr~   99 (130)
T d1rzga1          91 TAVFYCASP   99 (130)
T ss_dssp             CEEEEEEEC
T ss_pred             cEEEEEEEe
Confidence            999999643

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.49  E-value=0.00041  Score=31.07  Aligned_cols=64  Identities=16%  Similarity=0.302  Sum_probs=38.6

Q ss_pred             CCceEEEEeEeCccCC--CeEEEEe--CCEEe------c-c----------cceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFPR--PHITWTK--DDIEL------T-F----------HKYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~--~~~~w~~--~~~~~------~-~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.+.|.+.|...  -.+.|++  .|..+      . .          ..++.+..  + ......-|.+..++.+|
T Consensus        14 pg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSr--D-~s~~t~yL~~~~L~~eD   90 (124)
T d2b1hh1          14 SGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSA--D-RSTNTAHLQWSSLKPSD   90 (124)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEE--E-TTTTEEEEEESSCCGGG
T ss_pred             CCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEee--c-CCCcEEEEeeecccccc
Confidence            5889999999987542  3467765  22111      0 0          11222221  1 11223468999999999


Q ss_pred             CeEEEEEe
Q psy11826         61 AGYYECVA   68 (83)
Q Consensus        61 ~g~y~C~~   68 (83)
                      ...|.|-.
T Consensus        91 TA~YYCAR   98 (124)
T d2b1hh1          91 TALYYCAR   98 (124)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEee
Confidence            99999954

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.47  E-value=0.00053  Score=30.75  Aligned_cols=65  Identities=15%  Similarity=0.287  Sum_probs=39.4

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEe--CCEEe------ccc-----------ceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTK--DDIEL------TFH-----------KYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~~~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.+.|.|.+.|..  .-.+.|++  .|..+      ...           .++.+..  + .......|.|..++.+|
T Consensus        14 pg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSr--D-~s~~t~~Lqm~sL~~eD   90 (125)
T d1op3h1          14 AGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSR--D-DLEDFVYLQMHKMRVED   90 (125)
T ss_dssp             TTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEE--E-TTTTEEEEEECSCCGGG
T ss_pred             CCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEec--c-CccceEeeeeeccCCcc
Confidence            578899999987743  33577875  22111      110           1222222  1 11223468999999999


Q ss_pred             CeEEEEEee
Q psy11826         61 AGYYECVAD   69 (83)
Q Consensus        61 ~g~y~C~~~   69 (83)
                      ...|.|-..
T Consensus        91 TAvYYCAr~   99 (125)
T d1op3h1          91 TAIYYCARK   99 (125)
T ss_dssp             CEEEEEEEE
T ss_pred             ceeEeEeec
Confidence            999999754

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.45  E-value=0.00048  Score=30.73  Aligned_cols=65  Identities=18%  Similarity=0.366  Sum_probs=39.5

Q ss_pred             CCceEEEEeEeCcc--CCCeEEEEe--CCEEec-------cc----------ceEEEEEEecCCCeEEEEEEEccCCCCC
Q psy11826          2 LGRKITFFCMAEGF--PRPHITWTK--DDIELT-------FH----------KYFQVHEWFLGNNTIKSKMEIDPATQKD   60 (83)
Q Consensus         2 ~g~~~~~~C~~~~~--~~~~~~w~~--~~~~~~-------~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~~   60 (83)
                      .|+.++|.|.+.|.  ..-.+.|++  .|..+.       ..          .++.+..   +.......|.+..++.+|
T Consensus        14 Pg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSr---D~s~~t~yLq~~~L~~eD   90 (121)
T d2p49b1          14 AGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISR---DKGKNTVYLQMDSLKPED   90 (121)
T ss_dssp             TTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEEC---TTSTTEEEEEECSCCGGG
T ss_pred             CCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEee---cCCceEEEEEeeeccccc
Confidence            58899999998775  344577876  221110       00          1122211   112223468999999999


Q ss_pred             CeEEEEEee
Q psy11826         61 AGYYECVAD   69 (83)
Q Consensus        61 ~g~y~C~~~   69 (83)
                      ...|.|-..
T Consensus        91 tAvYYCAr~   99 (121)
T d2p49b1          91 TATYYCAAG   99 (121)
T ss_dssp             CEEEEEEES
T ss_pred             eeEEeeecc
Confidence            999999764

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.41  E-value=0.00089  Score=30.36  Aligned_cols=67  Identities=19%  Similarity=0.414  Sum_probs=40.6

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEe------cc-c----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIEL------TF-H----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~~-~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+++.|.+.|..  .-.+.|++  .|..+      .. .          .++.+..   +.......|.|..++.+
T Consensus        13 kPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSr---D~s~~t~yL~i~~L~~e   89 (135)
T d1ieha_          13 QPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISR---DNAKNTLYLQMNSLKSE   89 (135)
T ss_dssp             CTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEE---CTTTCCEEEEEESCCSS
T ss_pred             CCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEec---cCCCceeEecEeeeCcc
Confidence            3688999999988753  34578875  22211      11 0          1112111   11122346899999999


Q ss_pred             CCeEEEEEeeC
Q psy11826         60 DAGYYECVADN   70 (83)
Q Consensus        60 ~~g~y~C~~~~   70 (83)
                      |...|.|-...
T Consensus        90 DTAvYYCAr~~  100 (135)
T d1ieha_          90 DTAVYYCAKYS  100 (135)
T ss_dssp             SCEEEEEEEBS
T ss_pred             cceeeEEEEec
Confidence            99999997653

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.39  E-value=0.00086  Score=29.76  Aligned_cols=65  Identities=18%  Similarity=0.418  Sum_probs=39.6

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEe--CCEEe------ccc----------ceEEEEEEecCCCeEEEEEEEccCCCCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTK--DDIEL------TFH----------KYFQVHEWFLGNNTIKSKMEIDPATQKDA   61 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~~~   61 (83)
                      .|+.+++.|.+.|..  .-.+.|++  .|..+      ...          .++.+..  + .......|.|..++.+|.
T Consensus        14 PG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSr--D-~s~nt~~L~i~~l~~eDt   90 (118)
T d1lo4h1          14 PGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISR--D-IVRNILTLQMSRLRSEDT   90 (118)
T ss_dssp             TTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEE--E-TTTTEEEEEECSCCGGGC
T ss_pred             CCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEec--c-ccceeeeeccccccCCcc
Confidence            588999999988753  34577875  22211      110          1122221  1 112234689999999999


Q ss_pred             eEEEEEee
Q psy11826         62 GYYECVAD   69 (83)
Q Consensus        62 g~y~C~~~   69 (83)
                      ..|.|-..
T Consensus        91 A~YyCAr~   98 (118)
T d1lo4h1          91 AIYYCARG   98 (118)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEeccc
Confidence            99999654

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.32  E-value=0.0012  Score=29.89  Aligned_cols=66  Identities=15%  Similarity=0.329  Sum_probs=39.8

Q ss_pred             CCCceEEEEeEeCccCC--CeEEEEe--CCEEec-------cc----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFPR--PHITWTK--DDIELT-------FH----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~--~~~~w~~--~~~~~~-------~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.+.|.|.+.|..-  -.+.|++  .+..+.       ..          .++.+..   +.......|.+..++.+
T Consensus        12 kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~---D~s~~t~~L~~~~L~~e   88 (133)
T d1rzfh1          12 KPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISA---DESTRTVYLHLRGLRSD   88 (133)
T ss_dssp             CTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEE---ETTTTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEe---ccCcceeEEeeccCCCC
Confidence            36889999999987532  3467775  221110       00          1222221   11122346899999999


Q ss_pred             CCeEEEEEee
Q psy11826         60 DAGYYECVAD   69 (83)
Q Consensus        60 ~~g~y~C~~~   69 (83)
                      |...|.|-..
T Consensus        89 DtA~YYCAr~   98 (133)
T d1rzfh1          89 DTAVYYCASN   98 (133)
T ss_dssp             GCEEEEEEEE
T ss_pred             CCEEEEeeec
Confidence            9999999554

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.31  E-value=0.0012  Score=29.78  Aligned_cols=66  Identities=18%  Similarity=0.447  Sum_probs=39.4

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEe------cc-------------cceEEEEEEecCCCeEEEEEEEccCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIEL------TF-------------HKYFQVHEWFLGNNTIKSKMEIDPAT   57 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~   57 (83)
                      +.|+.++|.|.+.|..  .-.+.|++  .|..+      ..             ..++.+..  + .......|.+..++
T Consensus        13 kpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~--D-~s~nt~~Lq~~~L~   89 (131)
T d3c2ah1          13 KPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISR--D-DSKNTLYLQMNSLK   89 (131)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEE--E-GGGTEEEEEECSCC
T ss_pred             CCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEec--c-cccceeecceeccc
Confidence            3588999999987653  33577775  22211      00             01122221  1 11223469999999


Q ss_pred             CCCCeEEEEEee
Q psy11826         58 QKDAGYYECVAD   69 (83)
Q Consensus        58 ~~~~g~y~C~~~   69 (83)
                      .+|...|.|-..
T Consensus        90 ~eDTAvYYCAR~  101 (131)
T d3c2ah1          90 TEDTAVYSCTTD  101 (131)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCceEEEEecc
Confidence            999999999654

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.27  E-value=0.00052  Score=30.60  Aligned_cols=66  Identities=17%  Similarity=0.341  Sum_probs=39.2

Q ss_pred             CCCceEEEEeEeCccCC--CeEEEEe--CCEEe------cc--cc-----------eEEEEEEecCCCeEEEEEEEccCC
Q psy11826          1 MLGRKITFFCMAEGFPR--PHITWTK--DDIEL------TF--HK-----------YFQVHEWFLGNNTIKSKMEIDPAT   57 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~~--~~~~w~~--~~~~~------~~--~~-----------~~~~~~~~~~~~~~~~~l~i~~~~   57 (83)
                      +.|+.+.+.|.+.|...  -.+.|++  .|..+      ..  ..           ++.+..  + ......-|.+..++
T Consensus        13 kPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSr--D-~s~nt~yL~~~~L~   89 (121)
T d1nfdf1          13 QPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISR--D-DSRNSIYLQMNRLR   89 (121)
T ss_dssp             CTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEE--C-TTTSEEEEEEESCC
T ss_pred             CCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEcc--c-cccceeeceecccC
Confidence            36899999999887543  3467876  22211      10  00           111111  1 11223459999999


Q ss_pred             CCCCeEEEEEee
Q psy11826         58 QKDAGYYECVAD   69 (83)
Q Consensus        58 ~~~~g~y~C~~~   69 (83)
                      .+|...|.|-..
T Consensus        90 ~eDTAvYYCAr~  101 (121)
T d1nfdf1          90 VDDTAIYYCTRA  101 (121)
T ss_dssp             GGGCEECEEEEE
T ss_pred             CCcceEEEEecc
Confidence            999999999643

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.23  E-value=0.0015  Score=29.11  Aligned_cols=65  Identities=17%  Similarity=0.439  Sum_probs=39.7

Q ss_pred             CCceEEEEeEeCccC--CCeEEEEe--CCEEec------c--c-----------ceEEEEEEecCCCeEEEEEEEccCCC
Q psy11826          2 LGRKITFFCMAEGFP--RPHITWTK--DDIELT------F--H-----------KYFQVHEWFLGNNTIKSKMEIDPATQ   58 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~~------~--~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~   58 (83)
                      .|+.++|.|.+.|..  .-.+.|++  .|..+.      .  .           .++.+..  +. ......|.|..++.
T Consensus        14 pG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~--D~-s~n~~~L~~~~L~~   90 (120)
T d1dlfh_          14 PGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISR--DD-SKRRVYLQMNTLRA   90 (120)
T ss_dssp             TTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEE--ET-TTTEEEEEECSCCG
T ss_pred             CCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeec--cc-ccceeccceeeccC
Confidence            588999999988753  34578876  332211      0  0           0112211  11 11234689999999


Q ss_pred             CCCeEEEEEee
Q psy11826         59 KDAGYYECVAD   69 (83)
Q Consensus        59 ~~~g~y~C~~~   69 (83)
                      +|...|.|-..
T Consensus        91 eDtAvYYCA~~  101 (120)
T d1dlfh_          91 EDTGIYYCTGI  101 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEeeEe
Confidence            99999999654

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.23  E-value=0.00042  Score=30.74  Aligned_cols=65  Identities=18%  Similarity=0.467  Sum_probs=39.2

Q ss_pred             CCCceEEEEeEeCcc--CCCeEEEEe--CCEE------ec-cc----------ceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGF--PRPHITWTK--DDIE------LT-FH----------KYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~--~~~~~~w~~--~~~~------~~-~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.++|.|.+.|.  ..-.+.|++  .|..      +. ..          .++.+..   +.......|.+..++.+
T Consensus        13 kpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisr---D~s~~t~~L~~~sL~~e   89 (117)
T d1b2wh1          13 QPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISR---DKSKNTLYLQMNSLRPE   89 (117)
T ss_dssp             CTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEEC---CTTTTEEEEEECSCCGG
T ss_pred             CCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEe---ccccceEEeeeccccCC
Confidence            368899999998864  344567765  2211      11 10          1222211   12222346999999999


Q ss_pred             CCeEEEEEe
Q psy11826         60 DAGYYECVA   68 (83)
Q Consensus        60 ~~g~y~C~~   68 (83)
                      |...|.|-.
T Consensus        90 DTAvYYCAr   98 (117)
T d1b2wh1          90 DTAVYYCAR   98 (117)
T ss_dssp             GCEEEECCE
T ss_pred             cceEEEEcc
Confidence            999999954

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.21  E-value=6.8e-05  Score=32.94  Aligned_cols=68  Identities=16%  Similarity=0.266  Sum_probs=36.7

Q ss_pred             CceEEEEeEeCccCC--CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGFPR--PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      ++.+.+.|.+.++.+  ..+.|.+++....  .........++.+...+.|.+..-.......|.|.+....
T Consensus        27 ~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~--~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   96 (111)
T d1pfca_          27 KKKVSLTCMITGFYPADINVEWDSSEPSDY--KNTPPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHEA   96 (111)
T ss_dssp             TTSCCEEEEEESCCSSCCEEESSSCCTTTE--EEEEEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEETT
T ss_pred             CCceEEEEEEEeeECCCcEEEEeeCCCCCc--EEcccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            456789999988654  4689987763111  1111111112223444555554433333566999998753

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.17  E-value=0.0018  Score=29.07  Aligned_cols=67  Identities=21%  Similarity=0.393  Sum_probs=40.0

Q ss_pred             CCCceEEEEeEeCccC--CCeEEEEe--CCEEe------cc-----------cceEEEEEEecCCCeEEEEEEEccCCCC
Q psy11826          1 MLGRKITFFCMAEGFP--RPHITWTK--DDIEL------TF-----------HKYFQVHEWFLGNNTIKSKMEIDPATQK   59 (83)
Q Consensus         1 ~~g~~~~~~C~~~~~~--~~~~~w~~--~~~~~------~~-----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~   59 (83)
                      +.|+.++|.|.+.|..  .-.+.|++  .|..+      ..           ..++.+..  +. .....-|.|..++.+
T Consensus        13 kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~--D~-s~~t~yL~~~~L~~e   89 (127)
T d2fb4h1          13 QPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISR--ND-SKNTLFLQMDSLRPE   89 (127)
T ss_dssp             CTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEE--ET-TTTEEEEEECSCCGG
T ss_pred             CCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEec--cC-CccEEEeeeeeeeec
Confidence            3588999999988753  33567765  22111      11           11222222  11 122346899999999


Q ss_pred             CCeEEEEEeeC
Q psy11826         60 DAGYYECVADN   70 (83)
Q Consensus        60 ~~g~y~C~~~~   70 (83)
                      |...|.|-...
T Consensus        90 DTA~YYCAr~~  100 (127)
T d2fb4h1          90 DTGVYFCARDG  100 (127)
T ss_dssp             GCEEEEEEEEC
T ss_pred             ceeEEEEEEec
Confidence            99999996543

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.0017  Score=28.49  Aligned_cols=22  Identities=9%  Similarity=0.208  Sum_probs=19.1

Q ss_pred             EEEEEEccCCCCCCeEEEEEee
Q psy11826         48 KSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus        48 ~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      ...|.|.+++.+|++.|.|-+.
T Consensus        76 ~~~L~I~~l~~~DsavYyCa~~   97 (118)
T d1yjdc1          76 SVTFYLQNLYVNQTDIYFCKIE   97 (118)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEE
T ss_pred             eEEEEECCCCcccCeEEEEEEe
Confidence            3469999999999999999754

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.08  E-value=0.0017  Score=27.10  Aligned_cols=61  Identities=11%  Similarity=0.142  Sum_probs=34.4

Q ss_pred             eEEEEeEeCccCCC--eEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          5 KITFFCMAEGFPRP--HITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         5 ~~~~~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .+.+.|.+.++.++  .+.|.++|.........  ....++.+.   .+.+....  ....|.|.+....
T Consensus        15 ~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~--~~~~~gtys---~~s~~~~~--~~~~yTC~V~H~~   77 (86)
T d1hxma2          15 GTNVACLVKEFYPKDIRINLVSSKKITEFDPAI--VISPSGKYN---AVKLGKYE--DSNSVTCSVQHDN   77 (86)
T ss_dssp             TTEEEEEEESCBSSCCEEEEECSSEEEECCCEE--EECTTSSEE---EEEEEEET--TTTTCEEEEEETT
T ss_pred             CCEEEEEEeeEECCCCEEEEEECCEEccCcEEe--eeccCCcEE---EEEEEecC--CCCEEEEEEEECC
Confidence            45788999887544  57899998766543321  111122222   22222333  3346999998653

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0014  Score=27.26  Aligned_cols=49  Identities=27%  Similarity=0.424  Sum_probs=28.1

Q ss_pred             CceEEEEeEeCccCCCeEEEEeCCEE-ecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          3 GRKITFFCMAEGFPRPHITWTKDDIE-LTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         3 g~~~~~~C~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      |..+.+.|...-  ...|.|.+++.. +.....               ++.+.--...++|.|+|+.
T Consensus        21 ~~~V~L~C~t~e--E~~I~W~kd~~se~~~~Gn---------------tltV~VkE~~~aGnYTChk   70 (87)
T d3d85d1          21 GEMVVLTCDTPE--EDGITWTLDQSSEVLGSGK---------------TLTIQVKEFGDAGQYTCHK   70 (87)
T ss_dssp             CEEEEEECSSSC--CSSCEEEETTCCCCCEESS---------------EEEEEECSGGGCEEEEEEE
T ss_pred             ccEEEEecCCCc--ccccEEeeCCccccccCCC---------------EEEEEEEeccCCcceeEeC
Confidence            556788886322  236899998654 222211               2333222345889999973

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.83  E-value=3.4e-06  Score=37.52  Aligned_cols=70  Identities=13%  Similarity=0.222  Sum_probs=38.9

Q ss_pred             CceEEEEeEeCccCC----CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGFPR----PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~~~----~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      ++.++|.|.+.++.+    ..+.|.+++...............+..+...+.|.|..-.......|.|.+....
T Consensus        29 ~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~~ytC~V~H~~  102 (116)
T d1igyb3          29 TVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAA  102 (116)
T ss_dssp             TSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSS
T ss_pred             CCCcEEEEEEecEeCCCCEEEEEECcCCeEcCCcEEcccEECCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            567899999988643    2456888776543211111111111222334566665544344567999998654

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.0041  Score=26.49  Aligned_cols=62  Identities=21%  Similarity=0.148  Sum_probs=38.2

Q ss_pred             CCceEEEEeEeCccCCCeE-EEEeCCEEec-ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          2 LGRKITFFCMAEGFPRPHI-TWTKDDIELT-FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~-~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      .|+.+.+.|.+. .|...+ .|...+..+. ........    .    ...+.|..++..+.|.|.|.+.-..
T Consensus        19 eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~D----p----k~Gf~I~~~~~~~~g~y~C~a~~~g   82 (95)
T d1fltx_          19 EGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWD----S----RKGFIISNATYKEIGLLTCEATVNG   82 (95)
T ss_dssp             TTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEEE----T----TTEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEEC----C----CCCEEEeCCCcccCeEEEEEEEECC
Confidence            577888889864 555554 3444554443 22221111    0    1248889999999999999996543

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=1.5e-05  Score=34.51  Aligned_cols=68  Identities=16%  Similarity=0.234  Sum_probs=36.6

Q ss_pred             CceEEEEeEeCccC-C--CeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCCC
Q psy11826          3 GRKITFFCMAEGFP-R--PHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNPF   72 (83)
Q Consensus         3 g~~~~~~C~~~~~~-~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~   72 (83)
                      ++.++|.|.+.++. +  ..|.|.+++.........  ....++.....+.|.+..-.......|.|.+....
T Consensus        18 ~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~~~--~~~~~gt~s~~S~L~v~~~~W~~g~~ftC~V~H~~   88 (101)
T d1ow0a1          18 GSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPP--ERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPE   88 (101)
T ss_dssp             CSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEECCC--CCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCSS
T ss_pred             CCCeEEEEEEeCCCCCcceEEEEEECCceeeeecce--EECCCCCEEEEEEEEEcHHHcCCCCeEEEEEEeCC
Confidence            56788999998863 3  358998876432211100  01111222333444443333333578999998654

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0062  Score=24.60  Aligned_cols=46  Identities=15%  Similarity=0.473  Sum_probs=25.2

Q ss_pred             ceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         4 ~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      +.+.+.|.      -.+.|.+.+..+.....              .++.+-..-....|.|.|...
T Consensus        10 ~~V~L~Cn------~si~W~k~~~~~~~~~~--------------k~lnLG~~~~DPRG~Y~C~~~   55 (74)
T d1xiwb_          10 DRVFVNCN------TSITWVEGTVGTLLSDI--------------TRLDLGKRILDPRGIYRCNGT   55 (74)
T ss_dssp             TEEEEECS------SCEEEEEECCCEEEGGG--------------TEEEEEEGGGCCEEEEEEC--
T ss_pred             CeEEEEcc------CeeEEecCCcccccCCc--------------cEeecCCcccCCCcceEeCCc
Confidence            35777884      36899986543322211              123443444445699999654

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.08  E-value=0.071  Score=22.09  Aligned_cols=52  Identities=17%  Similarity=0.349  Sum_probs=30.9

Q ss_pred             ceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeC
Q psy11826          4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADN   70 (83)
Q Consensus         4 ~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~   70 (83)
                      ..+.+.|..   ....+.|++++..+......            ..++.|-..-....|.|.|....
T Consensus        23 GsV~L~Cn~---~~k~i~W~kdg~~i~~~~~~------------~ktlnLG~~~~DPRGiY~C~g~~   74 (86)
T d1jbja1          23 GSVLLTCGL---TDKTIKWLKDGSIISPLNAT------------KNTWNLGNNAKDPRGTYQCQGAK   74 (86)
T ss_dssp             CEEEEECSS---SCSCEEEEETTEECCCSSCC------------SSCCEEEETTSCCEEEEEEEESS
T ss_pred             CeEEEEeCC---CCcEEEEecCCceecccccc------------cceeecCCcccCCCcceEcCCCc
Confidence            346777853   23489999999876543210            01344444444456999996543

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.041  Score=23.45  Aligned_cols=27  Identities=11%  Similarity=0.190  Sum_probs=23.9

Q ss_pred             EEEEEccCCCCCCeEEEEEeeCCCcce
Q psy11826         49 SKMEIDPATQKDAGYYECVADNPFAID   75 (83)
Q Consensus        49 ~~l~i~~~~~~~~g~y~C~~~~~~g~~   75 (83)
                      .+|.|..+.+.|.|.|.-.+.+..|..
T Consensus        63 GtLkIK~L~~~d~GtYkv~vYd~~Gk~   89 (101)
T d1hnfa1          63 GTLKIKHLKTDDQDIYKVSIYDTKGKN   89 (101)
T ss_dssp             SCEEECSCCGGGCEEEEEEEEETTSCE
T ss_pred             CcEEeeeeeecCCCcEEEEEEcCCCcE
Confidence            479999999999999999999888764

>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.11  Score=22.25  Aligned_cols=60  Identities=13%  Similarity=0.253  Sum_probs=39.6

Q ss_pred             CCceEEEEeEeCc-------cCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          2 LGRKITFFCMAEG-------FPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         2 ~g~~~~~~C~~~~-------~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      .|+.++..|....       .....+.|..+++.++.+......    ..   .+++.+.++.... ....|...
T Consensus        17 lGS~~TAsCtI~~~c~~~~~~~A~~I~Wkl~~~~~P~~qy~~ln----~T---~~Svtl~~l~~~~-a~L~C~~l   83 (100)
T d1i1ra1          17 LHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN----RT---ASSVTFTDIASLN-IQLTCNIL   83 (100)
T ss_dssp             TTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGGGCEEEE----TT---EEEEEECSCCCSE-EEEEEEEE
T ss_pred             CCCCEEEEEEECchhcCccCCCcceEEEEECCEECCchheEccC----Cc---EEEEEEccccCCc-ceeEEEEe
Confidence            5889999999752       234689999999999876543221    11   3468888877554 34556443

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.1  Score=21.40  Aligned_cols=51  Identities=24%  Similarity=0.432  Sum_probs=29.8

Q ss_pred             ceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         4 ~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      ..+.+.|.   .....+.|++++..+......            ..++.+-..-....|.|.|...
T Consensus        18 g~V~L~Cn---~~~k~i~W~kdg~~i~~~~~~------------~ktlnLG~~~~DPRG~Y~C~~~   68 (81)
T d1sy6a1          18 GSVLLTCD---AEAKNITWFKDGKMIGFLTED------------KKKWNLGSNAKDPRGMYQCKGS   68 (81)
T ss_dssp             SEEEEEEC---SCSSEEEEEETTEEEEEEESS------------CCCEEEEEGGGCCEEEEEEESS
T ss_pred             CeEEEEeC---CCCcEEEEecCCeEeecccCC------------cceeecCCcccCCCcceEcCCC
Confidence            45777885   334489999998755421100            0134444444445699999654

>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=89.30  E-value=0.076  Score=20.90  Aligned_cols=45  Identities=16%  Similarity=0.338  Sum_probs=25.2

Q ss_pred             ceEEEEeEeCccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEe
Q psy11826          4 RKITFFCMAEGFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVA   68 (83)
Q Consensus         4 ~~~~~~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~   68 (83)
                      +.+.+.|.      -.|.|++++..+.....              .++.+-..-....|.|.|..
T Consensus         9 dkV~L~Cn------~sI~w~k~~~~~~~~~~--------------ktlnLG~~~~DPRGiY~C~~   53 (66)
T d1xmwa2           9 DKVILKCN------SSITLLQGTAGQEVSDN--------------KTLNLGKRIEDPRGMYQCGE   53 (66)
T ss_dssp             TEEEEECS------SSCEEEEECCCCBSSSS--------------SBBCCBCSTTCCEEEEECCS
T ss_pred             ceEEEEcc------CeEEEccCccccccCCC--------------cEEeCCCcccCCCcceECCC
Confidence            46778885      24789887543332211              12333343444469999943

>d2oz4a1 b.1.1.3 (A:283-366) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.06  E-value=0.37  Score=19.71  Aligned_cols=52  Identities=17%  Similarity=0.425  Sum_probs=29.8

Q ss_pred             CCceEEEEeEeCccCCCeEEEEeCCEEec-ccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEeeCC
Q psy11826          2 LGRKITFFCMAEGFPRPHITWTKDDIELT-FHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVADNP   71 (83)
Q Consensus         2 ~g~~~~~~C~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~   71 (83)
                      +|..+++.|.+.  +.+.+.  .+|.... ...              ...|.+..-...|...+.|.+.-.
T Consensus        15 eGt~VtVtC~a~--~~a~v~--L~G~p~~~Pg~--------------~aql~LnAseeDd~R~F~C~A~Le   67 (84)
T d2oz4a1          15 EGTEVTVKCEAH--PRAKVT--LNGVPAQPLGP--------------RAQLLLKATPEDNGRSFSCSATLE   67 (84)
T ss_dssp             TTCEEEEEEECC--TTSEEE--ESSCSSSCCSS--------------EECCEEECCGGGTTEEEEEEEEEE
T ss_pred             CCCEEEEEEecC--CCcEEE--EccCCCCCCCC--------------ceEEEEecCcccCCcEEEEEEEEE
Confidence            578889999854  555554  2343221 111              134665544455567899998753

>d2d9qb1 b.1.1.3 (B:3-96) Granulocyte colony-stimulating factor (GC-SF) receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Granulocyte colony-stimulating factor (GC-SF) receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.12  E-value=0.57  Score=19.70  Aligned_cols=62  Identities=21%  Similarity=0.352  Sum_probs=37.7

Q ss_pred             CCceEEEEeEeC-----ccCCCeEEEEeCCEEecccceEEEEEEecCCCeEEEEEEEccCCCCCCeEEEEEee
Q psy11826          2 LGRKITFFCMAE-----GFPRPHITWTKDDIELTFHKYFQVHEWFLGNNTIKSKMEIDPATQKDAGYYECVAD   69 (83)
Q Consensus         2 ~g~~~~~~C~~~-----~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~   69 (83)
                      +|++++-.|...     ..+.+.|.|..++..++......     .......+++.+.++.... ...+|...
T Consensus        13 lGsp~tAsC~I~e~C~~~~~a~~I~Wkl~~~~vP~~rq~~-----~~~~~~~SsVt~p~l~~~~-a~LtC~v~   79 (94)
T d2d9qb1          13 LGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQR-----LSDGTQESIITLPHLNHTQ-AFLSCSLN   79 (94)
T ss_dssp             TTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTCEECC-----CSSSCCCEEEEESCCCSSE-EEEEEEEE
T ss_pred             CCCCEEEEEEECccccCcCCcceEEEEECCEECCCcceeE-----EecCcEEEEEEecccccCc-ccEEEEEE
Confidence            588899999753     23456899998888776422110     1122234678888777544 44556554