Psyllid ID: psy11827

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVVPLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSEENLPVTSIWSKQYEKPCDRHSSEESVSEPPVFQKLKPVASSPL
cHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHccccEEEccccHHHHHHHHHHcccccEEEcccccccccccccHHccccccccEEEEEccccHHHHccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHccccccccccHHHHHHHHccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccc
cHHHHHHHHcccEEEEEEcccccccccccccccccccccccccccccccHHHHccccccccccccccHHHHHHHHHHHHHHcccEEEccccHHHHHHHHHHHccccEEEccccHHHHHcccEEEEccccccccEEEcHHHHcHHHHHccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccEccccHHHHHHHHHHHHHccccccccccccEccccccccHHHHHHHHcccccccccHHHHHHHHHcccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccc
MKYIHMLLAHKIKVIMVfdgrhlpakeateedrrkkRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRArgvdcivapfeADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLdlsgnccfmdreklpsalkmplakftdaKFRYMCILsgcdywtgikgmglkKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMflyqpvydpvskevvplnplesemrdEVFSQLSLKELELPKDQAFQLAlgnldpfsleemdqwnpdseenlpvtsiwskqyekpcdrhsseesvseppvfqklkpvasspl
MKYIHMLLAHKIKvimvfdgrhlpakeateedrrkkrdshkAKAAellildrgseaqSHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVVPLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSEENLPVTSIWSKQYEKPCDRHsseesvseppvfqklkpvasspl
MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVVPLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSEENLPVTSIWSKQYEKPCDRHsseesvseppvFQKLKPVASSPL
**YIHMLLAHKIKVIMVFDGRH****************************************SVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVVPL**************************AFQLALGNL***********************************************************
MKYIHMLLAHKIKVIMVFDGRHLPAKEAT************AKA**LL**DR*****SHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVVPLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMD*******************************************P******
MKYIHMLLAHKIKVIMVFDGRHLPAK****************KAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVVPLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSEENLPVTSIWSKQ******************VFQKLKPVASSPL
MKYIHMLLAHKIKVIMVFDGRHLPA********************************SHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVVPLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNL*******MDQ**PD*********************************************
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MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVVPLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSEENLPVTSIWSKQYEKPCDRHSSEESVSEPPVFQKLKPVASSPL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query336 2.2.26 [Sep-21-2011]
Q24558 732 Exonuclease 1 OS=Drosophi yes N/A 0.907 0.416 0.449 4e-70
Q803U7 806 Exonuclease 1 OS=Danio re yes N/A 0.928 0.387 0.394 1e-65
Q9UQ84 846 Exonuclease 1 OS=Homo sap yes N/A 0.892 0.354 0.406 4e-61
Q9W6K2 734 Exonuclease 1 OS=Xenopus N/A N/A 0.848 0.388 0.412 1e-58
Q9QZ11 837 Exonuclease 1 OS=Mus musc yes N/A 0.901 0.362 0.416 1e-58
Q8L6Z7 735 Exonuclease 1 OS=Arabidop yes N/A 0.803 0.367 0.352 1e-39
P53695 571 Exodeoxyribonuclease 1 OS yes N/A 0.708 0.416 0.381 2e-38
Q54ED2 1046 Exonuclease 1 OS=Dictyost yes N/A 0.684 0.219 0.373 4e-38
Q60GC1 836 Exonuclease 1 OS=Oryza sa yes N/A 0.809 0.325 0.339 3e-37
P39875 702 Exodeoxyribonuclease 1 OS yes N/A 0.723 0.346 0.350 2e-34
>sp|Q24558|EXO1_DROME Exonuclease 1 OS=Drosophila melanogaster GN=tos PE=1 SV=1 Back     alignment and function desciption
 Score =  265 bits (677), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 141/314 (44%), Positives = 197/314 (62%), Gaps = 9/314 (2%)

Query: 1   MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
           +KY++MLL++ IK I+VFDG+HLPAK  TE+ RR  R   K +AAELL L R  EA+SH+
Sbjct: 60  LKYVNMLLSYDIKPILVFDGQHLPAKALTEKRRRDSRKQSKERAAELLRLGRIEEARSHM 119

Query: 61  RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
           R+ VDVTH MAL +I+ CR+R VDCIVAP+EADAQMA+LN A  A Y+ITEDSDL +FGA
Sbjct: 120 RRCVDVTHDMALRLIRECRSRNVDCIVAPYEADAQMAWLNRADVAQYIITEDSDLTLFGA 179

Query: 121 KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
           K II+KLDL+G+   ++ EKL  A+     K+   KFR MCILSGCDY   + G+GL KA
Sbjct: 180 KNIIFKLDLNGSGLLVEAEKLHLAMGCTEEKYHFDKFRRMCILSGCDYLDSLPGIGLAKA 239

Query: 181 KDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVV 240
             ++      D   AL+KI  Y  + + +++  +++ +F      F +  +Y+P+ + + 
Sbjct: 240 CKFILKTEQEDMRIALKKIPSYLNMRN-LEVDDDYIENFMKAEATFRHMFIYNPLERRMQ 298

Query: 241 PLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSEENLPVT- 299
            L  LE    DE +   +   LE   +QA  LALGNL+PFS++ +D W P+     P   
Sbjct: 299 RLCALEDYETDERYCSNAGTLLE-DSEQALHLALGNLNPFSMKRLDSWTPEKAWPTPKNV 357

Query: 300 ------SIWSKQYE 307
                 SIW   ++
Sbjct: 358 KRSKHKSIWQTNFQ 371
5'->3' double-stranded DNA exonuclease which may also contain a cryptic 3'->5' double-stranded DNA exonuclease activity. Also exhibits endonuclease activity against 5'-overhanging flap structures similar to those generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. Required for DNA mismatch repair (MMR).
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -
>sp|Q803U7|EXO1_DANRE Exonuclease 1 OS=Danio rerio GN=exo1 PE=2 SV=1 Back     alignment and function description
>sp|Q9UQ84|EXO1_HUMAN Exonuclease 1 OS=Homo sapiens GN=EXO1 PE=1 SV=2 Back     alignment and function description
>sp|Q9W6K2|EXO1_XENLA Exonuclease 1 OS=Xenopus laevis GN=exo1 PE=2 SV=1 Back     alignment and function description
>sp|Q9QZ11|EXO1_MOUSE Exonuclease 1 OS=Mus musculus GN=Exo1 PE=2 SV=2 Back     alignment and function description
>sp|Q8L6Z7|EXO1_ARATH Exonuclease 1 OS=Arabidopsis thaliana GN=EXO1 PE=2 SV=2 Back     alignment and function description
>sp|P53695|EXO1_SCHPO Exodeoxyribonuclease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=exo1 PE=1 SV=1 Back     alignment and function description
>sp|Q54ED2|EXO1_DICDI Exonuclease 1 OS=Dictyostelium discoideum GN=exo1 PE=3 SV=1 Back     alignment and function description
>sp|Q60GC1|EXO1_ORYSJ Exonuclease 1 OS=Oryza sativa subsp. japonica GN=EXO1 PE=2 SV=1 Back     alignment and function description
>sp|P39875|EXO1_YEAST Exodeoxyribonuclease 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EXO1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
328720558 675 PREDICTED: exonuclease 1-like [Acyrthosi 0.875 0.435 0.471 1e-77
357603281 654 exonuclease [Danaus plexippus] 0.964 0.495 0.445 2e-74
340709250 725 PREDICTED: exonuclease 1-like [Bombus te 0.895 0.415 0.464 2e-73
347972009 861 AGAP004491-PA [Anopheles gambiae str. PE 0.898 0.350 0.476 1e-72
157112576 770 exonuclease [Aedes aegypti] gi|108878018 0.857 0.374 0.477 4e-71
195484202 730 GE12717 [Drosophila yakuba] gi|194176694 0.907 0.417 0.455 5e-70
345486309 730 PREDICTED: exonuclease 1-like [Nasonia v 0.913 0.420 0.457 6e-70
195115002 661 GI14203 [Drosophila mojavensis] gi|19391 0.901 0.458 0.437 2e-69
312378187 835 hypothetical protein AND_10346 [Anophele 0.854 0.343 0.472 2e-69
15291899 732 LD31018p [Drosophila melanogaster] 0.907 0.416 0.449 2e-68
>gi|328720558|ref|XP_001942954.2| PREDICTED: exonuclease 1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  295 bits (756), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 151/320 (47%), Positives = 212/320 (66%), Gaps = 26/320 (8%)

Query: 1   MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
           M+++ MLL   IK I+VFDG+HLPAK  TE  RRK R+ ++ KAAEL+ LD+G EA S L
Sbjct: 60  MRFVSMLLDQNIKPILVFDGQHLPAKADTESKRRKLREENRKKAAELMRLDKGKEASSLL 119

Query: 61  RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
           R+S+DVTHKMALN+I+ CR   VDCIVAP+EAD+Q+AYLN++G A  VITEDSDLL+FG 
Sbjct: 120 RRSIDVTHKMALNLIKRCREINVDCIVAPYEADSQLAYLNLSGIAHIVITEDSDLLLFGC 179

Query: 121 KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
           K++++KLD +G    +++EK+  ++ +   +F+  KFRYMCILSGCDY   + G+GL KA
Sbjct: 180 KRVLFKLDQNGAGILIEQEKIHLSMNIKPEQFSFDKFRYMCILSGCDYLPSVPGVGLVKA 239

Query: 181 KDYVFSIMDPDFENALRKINVYGKIGSYV--KITKEFLTSFHNTNLMFLYQPVYDPVSKE 238
           + ++    +PD   AL       ++GS+V  KI  E+   F + + MF YQPV+DP+S+ 
Sbjct: 240 RQFITRTSEPDIYKALL------RLGSFVNIKIPPEYRDQFMDADRMFQYQPVFDPLSRR 293

Query: 239 VVPLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSEENLPV 298
           ++PLN +       + S+L+        DQA+QLALGN+DP SLE +D W+PD +     
Sbjct: 294 IIPLNDISDSNLPVLVSKLTC-------DQAYQLALGNIDPISLEVVDSWDPDIQLTPDK 346

Query: 299 T-----------SIWSKQYE 307
                       SIWSK Y+
Sbjct: 347 VVKKKIIQARHKSIWSKDYQ 366

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|357603281|gb|EHJ63691.1| exonuclease [Danaus plexippus] Back     alignment and taxonomy information
>gi|340709250|ref|XP_003393224.1| PREDICTED: exonuclease 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|347972009|ref|XP_313789.5| AGAP004491-PA [Anopheles gambiae str. PEST] gi|333469129|gb|EAA09057.6| AGAP004491-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|157112576|ref|XP_001657573.1| exonuclease [Aedes aegypti] gi|108878018|gb|EAT42243.1| AAEL006209-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|195484202|ref|XP_002090593.1| GE12717 [Drosophila yakuba] gi|194176694|gb|EDW90305.1| GE12717 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|345486309|ref|XP_001603157.2| PREDICTED: exonuclease 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|195115002|ref|XP_002002056.1| GI14203 [Drosophila mojavensis] gi|193912631|gb|EDW11498.1| GI14203 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|312378187|gb|EFR24829.1| hypothetical protein AND_10346 [Anopheles darlingi] Back     alignment and taxonomy information
>gi|15291899|gb|AAK93218.1| LD31018p [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query336
FB|FBgn0015553 732 tos "tosca" [Drosophila melano 0.860 0.394 0.470 8.5e-65
UNIPROTKB|F1S8P2 836 EXO1 "Uncharacterized protein" 0.904 0.363 0.423 4.3e-61
UNIPROTKB|E1BF15 835 EXO1 "Uncharacterized protein" 0.904 0.364 0.426 1.5e-60
UNIPROTKB|E2QWL7 836 EXO1 "Uncharacterized protein" 0.904 0.363 0.413 3.9e-60
UNIPROTKB|Q9UQ84 846 EXO1 "Exonuclease 1" [Homo sap 0.904 0.359 0.416 3.9e-60
ZFIN|ZDB-GENE-040426-2828 806 exo1 "exonuclease 1" [Danio re 0.910 0.379 0.407 7.3e-59
MGI|MGI:1349427 837 Exo1 "exonuclease 1" [Mus musc 0.901 0.362 0.412 1.2e-58
UNIPROTKB|E1C1G7 798 EXO1 "Uncharacterized protein" 0.895 0.377 0.417 1.5e-58
RGD|1309465 836 Exo1 "exonuclease 1" [Rattus n 0.898 0.361 0.412 5.1e-58
UNIPROTKB|Q9W6K2 734 exo1 "Exonuclease 1" [Xenopus 0.848 0.388 0.415 7.8e-55
FB|FBgn0015553 tos "tosca" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 137/291 (47%), Positives = 191/291 (65%)

Query:     1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
             +KY++MLL++ IK I+VFDG+HLPAK  TE+ RR  R   K +AAELL L R  EA+SH+
Sbjct:    60 LKYVNMLLSYDIKPILVFDGQHLPAKALTEKRRRDSRKQSKERAAELLRLGRIEEARSHM 119

Query:    61 RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
             R+ VDVTH MAL +I+ CR+R VDCIVAP+EADAQMA+LN A  A Y+ITEDSDL +FGA
Sbjct:   120 RRCVDVTHDMALRLIRECRSRNVDCIVAPYEADAQMAWLNRADVAQYIITEDSDLTLFGA 179

Query:   121 KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
             K II+KLDL+G+   ++ EKL  A+     K+   KFR MCILSGCDY   + G+GL KA
Sbjct:   180 KNIIFKLDLNGSGLLVEAEKLHLAMGCTEEKYHFDKFRRMCILSGCDYLDSLPGIGLAKA 239

Query:   181 KDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVV 240
               ++      D   AL+KI  Y  + + +++  +++ +F      F +  +Y+P+ + + 
Sbjct:   240 CKFILKTEQEDMRIALKKIPSYLNMRN-LEVDDDYIENFMKAEATFRHMFIYNPLERRMQ 298

Query:   241 PLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPD 291
              L  LE    DE +   +   LE   +QA  LALGNL+PFS++ +D W P+
Sbjct:   299 RLCALEDYETDERYCSNAGTLLE-DSEQALHLALGNLNPFSMKRLDSWTPE 348
GO:0008852 "exodeoxyribonuclease I activity" evidence=ISS
GO:0004518 "nuclease activity" evidence=NAS
GO:0006281 "DNA repair" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
UNIPROTKB|F1S8P2 EXO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BF15 EXO1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWL7 EXO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UQ84 EXO1 "Exonuclease 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2828 exo1 "exonuclease 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1349427 Exo1 "exonuclease 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C1G7 EXO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1309465 Exo1 "exonuclease 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9W6K2 exo1 "Exonuclease 1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.27LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
cd09857210 cd09857, PIN_EXO1, PIN domain of Exonuclease-1, a 1e-73
smart0048473 smart00484, XPGI, Xeroderma pigmentosum G I-region 4e-22
PTZ00217393 PTZ00217, PTZ00217, flap endonuclease-1; Provision 2e-21
cd00128209 cd00128, PIN_FEN1_EXO1-like, PIN domains of Flap E 2e-21
PRK03980292 PRK03980, PRK03980, flap endonuclease-1; Provision 1e-20
TIGR03674338 TIGR03674, fen_arch, flap structure-specific endon 3e-20
cd09868249 cd09868, PIN_XPG, PIN domain of Xeroderma pigmento 1e-19
COG0258310 COG0258, Exo, 5'-3' exonuclease (including N-termi 7e-19
pfam0086746 pfam00867, XPG_I, XPG I-region 8e-19
cd0990873 cd09908, H3TH_EXO1, H3TH domain of Exonuclease-1, 1e-17
cd09867261 cd09867, PIN_FEN1, PIN domain of Flap Endonuclease 4e-17
cd09870239 cd09870, PIN_YEN1, PIN domain of Yeast Endonucleas 9e-17
cd0990173 cd09901, H3TH_FEN1-like, H3TH domains of Flap endo 8e-16
cd09858215 cd09858, PIN_MKT1, PIN domain of Mkt1: A global re 3e-12
cd09856207 cd09856, PIN_FEN1-like, PIN domain of Flap Endonuc 1e-08
TIGR006001034 TIGR00600, rad2, DNA excision repair protein (rad2 9e-08
cd0989768 cd09897, H3TH_FEN1-XPG-like, H3TH domains of Flap 1e-07
cd09852120 cd09852, PIN_SF, PIN (PilT N terminus) domain: Sup 2e-07
cd09869233 cd09869, PIN_GEN1, PIN domain of Gap Endonuclease 2e-07
smart0048599 smart00485, XPGN, Xeroderma pigmentosum G N-region 9e-07
smart0027936 smart00279, HhH2, Helix-hairpin-helix class 2 (Pol 1e-04
cd09853163 cd09853, PIN_StructSpec-5'-nucleases, PIN domains 4e-04
cd0990770 cd09907, H3TH_FEN1-Euk, H3TH domain of Flap Endonu 0.001
pfam12813223 pfam12813, XPG_I_2, XPG domain containing 0.001
cd0990052 cd09900, H3TH_XPG-like, H3TH domains of Flap endon 0.002
cd0008071 cd00080, H3TH_StructSpec-5'-nucleases, H3TH domain 0.002
>gnl|CDD|189027 cd09857, PIN_EXO1, PIN domain of Exonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs Back     alignment and domain information 
 Score =  226 bits (578), Expect = 1e-73
 Identities = 73/147 (49%), Positives = 103/147 (70%)

Query: 1   MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
           MK ++MLL + IK I+VFDG  LP+K+ TEE+RR++R+ +  KA ELL     SEA+   
Sbjct: 60  MKRVNMLLHYGIKPILVFDGGPLPSKKGTEEERRERREENLEKALELLREGNRSEARECF 119

Query: 61  RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
           +++VD+T +MA  +I+A R  GV+ IVAP+EADAQ+AYL   GY D VITEDSDLL +G 
Sbjct: 120 QRAVDITPEMAHELIKALRKEGVEYIVAPYEADAQLAYLAKTGYVDAVITEDSDLLAYGC 179

Query: 121 KKIIYKLDLSGNCCFMDREKLPSALKM 147
            K+++KLD +G+C  +D   L    K+
Sbjct: 180 PKVLFKLDKNGSCQEIDLADLLKCRKL 206

Exonuclease-1 (EXO1) is involved in multiple, eukaryotic DNA metabolic pathways, including DNA replication processes (5' flap DNA endonuclease activity and double stranded DNA 5'-exonuclease activity), DNA repair processes (DNA mismatch repair (MMR) and post-replication repair (PRR)), recombination, and telomere integrity. EXO1 functions in the MMS2 error-free branch of the PRR pathway in the maintenance and repair of stalled replication forks. Studies also suggest that EXO1 plays both structural and catalytic roles during MMR-mediated mutation avoidance. EXO1 belongs to the FEN1-EXO1-like family of structure-specific, 5' nucleases. These nucleases contain a PIN (PilT N terminus) domain with a helical arch/clamp region (I domain) of variable length (approximately 43 residues in EXO1 PIN domains) and a H3TH (helix-3-turn-helix) domain, an atypical helix-hairpin-helix-2-like region. Both the H3TH domain (not included here) and the helical arch/clamp region are involved in DNA binding. Nucleases within this group also have a carboxylate-rich active site that is involved in binding essential divalent metal ion cofactors (Mg2+/Mn2+). EXO1 nucleases also have C-terminal Mlh1- and Msh2-binding domains which allow interaction with MMR and PRR proteins, respectively. Length = 210
>gnl|CDD|214689 smart00484, XPGI, Xeroderma pigmentosum G I-region Back     alignment and domain information
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional Back     alignment and domain information
>gnl|CDD|189020 cd00128, PIN_FEN1_EXO1-like, PIN domains of Flap Endonuclease-1 (FEN1)-like and Exonuclease-1 (EXO1)-like nucleases, structure-specific, divalent-metal-ion dependent, 5' nucleases Back     alignment and domain information
>gnl|CDD|235185 PRK03980, PRK03980, flap endonuclease-1; Provisional Back     alignment and domain information
>gnl|CDD|234306 TIGR03674, fen_arch, flap structure-specific endonuclease Back     alignment and domain information
>gnl|CDD|189038 cd09868, PIN_XPG, PIN domain of Xeroderma pigmentosum complementation group G (XPG) nuclease, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs Back     alignment and domain information
>gnl|CDD|223336 COG0258, Exo, 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|216163 pfam00867, XPG_I, XPG I-region Back     alignment and domain information
>gnl|CDD|188628 cd09908, H3TH_EXO1, H3TH domain of Exonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease Back     alignment and domain information
>gnl|CDD|189037 cd09867, PIN_FEN1, PIN domain of Flap Endonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs Back     alignment and domain information
>gnl|CDD|189040 cd09870, PIN_YEN1, PIN domain of Yeast Endonuclease 1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and fungal homologs Back     alignment and domain information
>gnl|CDD|188621 cd09901, H3TH_FEN1-like, H3TH domains of Flap endonuclease-1 (FEN1)-like structure specific 5' nucleases: FEN1 (eukaryotic) and EXO1 Back     alignment and domain information
>gnl|CDD|189028 cd09858, PIN_MKT1, PIN domain of Mkt1: A global regulator of mRNAs encoding mitochondrial proteins and eukaryotic homologs Back     alignment and domain information
>gnl|CDD|189026 cd09856, PIN_FEN1-like, PIN domain of Flap Endonuclease-1 (FEN1)-like, structure-specific, divalent-metal-ion dependent, 5' nucleases Back     alignment and domain information
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2) Back     alignment and domain information
>gnl|CDD|188617 cd09897, H3TH_FEN1-XPG-like, H3TH domains of Flap endonuclease-1 (FEN1)-like structure specific 5' nucleases Back     alignment and domain information
>gnl|CDD|189022 cd09852, PIN_SF, PIN (PilT N terminus) domain: Superfamily Back     alignment and domain information
>gnl|CDD|189039 cd09869, PIN_GEN1, PIN domain of Gap Endonuclease 1, a structure-specific, divalent-metal-ion dependent, 5' nuclease and homologs Back     alignment and domain information
>gnl|CDD|214690 smart00485, XPGN, Xeroderma pigmentosum G N-region Back     alignment and domain information
>gnl|CDD|197623 smart00279, HhH2, Helix-hairpin-helix class 2 (Pol1 family) motifs Back     alignment and domain information
>gnl|CDD|189023 cd09853, PIN_StructSpec-5'-nucleases, PIN domains of structure-specific 5' nucleases (or flap endonuclease-1-like) involved in DNA replication, repair, and recombination Back     alignment and domain information
>gnl|CDD|188627 cd09907, H3TH_FEN1-Euk, H3TH domain of Flap Endonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease: Eukaryotic homologs Back     alignment and domain information
>gnl|CDD|221785 pfam12813, XPG_I_2, XPG domain containing Back     alignment and domain information
>gnl|CDD|188620 cd09900, H3TH_XPG-like, H3TH domains of Flap endonuclease-1 (FEN1)-like structure specific 5' nucleases: FEN1 (archaeal), GEN1, YEN1, and XPG Back     alignment and domain information
>gnl|CDD|188616 cd00080, H3TH_StructSpec-5'-nucleases, H3TH domains of structure-specific 5' nucleases (or flap endonuclease-1-like) involved in DNA replication, repair, and recombination Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 336
KOG2518|consensus 556 100.0
PTZ00217393 flap endonuclease-1; Provisional 100.0
cd00128316 XPG Xeroderma pigmentosum G N- and I-regions (XPGN 100.0
PRK03980292 flap endonuclease-1; Provisional 100.0
TIGR03674338 fen_arch flap structure-specific endonuclease. End 100.0
KOG2519|consensus449 100.0
TIGR006001034 rad2 DNA excision repair protein (rad2). All prote 99.98
PF0086794 XPG_I: XPG I-region; InterPro: IPR006086 This entr 99.93
COG0258310 Exo 5'-3' exonuclease (including N-terminal domain 99.93
smart00475259 53EXOc 5'-3' exonuclease. 99.92
cd00008240 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonucleas 99.92
KOG2520|consensus815 99.9
PRK14976281 5'-3' exonuclease; Provisional 99.9
PRK05755 880 DNA polymerase I; Provisional 99.85
TIGR00593 887 pola DNA polymerase I. This family is based on the 99.83
smart0048473 XPGI Xeroderma pigmentosum G I-region. domain in n 99.8
PRK09482256 flap endonuclease-like protein; Provisional 99.79
cd0008075 HhH2_motif Helix-hairpin-helix class 2 (Pol1 famil 99.37
PHA00439286 exonuclease 99.25
smart0027936 HhH2 Helix-hairpin-helix class 2 (Pol1 family) mot 98.95
PF00752101 XPG_N: XPG N-terminal domain; InterPro: IPR006085 98.94
smart0048599 XPGN Xeroderma pigmentosum G N-region. domain in n 98.87
TIGR00600 1034 rad2 DNA excision repair protein (rad2). All prote 98.69
PF12813246 XPG_I_2: XPG domain containing 98.55
PHA02567304 rnh RnaseH; Provisional 98.53
PF01367101 5_3_exonuc: 5'-3' exonuclease, C-terminal SAM fold 98.44
COG5366 531 Protein involved in propagation of M2 dsRNA satell 98.07
PF02739169 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolv 97.88
PHA03065438 Hypothetical protein; Provisional 97.48
PF04599425 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 P 97.38
PF03159237 XRN_N: XRN 5'-3' exonuclease N-terminus; InterPro: 96.86
PF1224790 MKT1_N: Temperature dependent protein affecting M2 96.24
KOG2045|consensus 1493 95.91
COG5049 953 XRN1 5'-3' exonuclease [DNA replication, recombina 95.81
KOG2044|consensus 931 94.68
PF0063330 HHH: Helix-hairpin-helix motif; InterPro: IPR00044 86.32
PF1282664 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS 86.2
>KOG2518|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.2e-77  Score=585.57  Aligned_cols=284  Identities=41%  Similarity=0.683  Sum_probs=267.5

Q ss_pred             ChHHHHHHhCCCEEEEEecCCCCccchhhHHHHHhhhhhhHHHHHHHHhhcchHHHHHhhhhcccchHHHHHHHHHHHHH
Q psy11827          1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRA   80 (336)
Q Consensus         1 mk~i~~L~~~gI~PifVFDG~~~p~K~~t~~~R~~~r~~~~~~a~~~~~~g~~~~a~~~f~~~~~it~~m~~~l~~~L~~   80 (336)
                      ||+|++|+++||+||+||||.++|+|++|+.+||++|+++++.|.+++++|+..+|+++|++|++|||+|++.+|++||.
T Consensus        60 ik~v~lL~~~gikPilVFDG~~LP~K~~te~~Rr~~R~~n~~~a~~ll~~G~~~~A~~~fqr~VdIT~~ma~~lI~~~r~  139 (556)
T KOG2518|consen   60 IKRVKLLLSYGIKPILVFDGDPLPSKKETERKRRERRKKNLDAAEQLLAEGKESNARECFQRCVDITPEMAHKLIQYLRS  139 (556)
T ss_pred             HHHHHHHHhcCCeEEEEecCCCcccccccchHHHHHHHHhHHHHHHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceecCccchHHHHHHHHHcCCeEEEecCCCceEeecccEEEEecCCCCCeeeeccccccccccCCcCCCCHHHHHHH
Q psy11827         81 RGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYM  160 (336)
Q Consensus        81 ~gV~~ivAPyEADAQlA~L~~~g~vdaViT~DSDll~fg~~~vi~kl~~~g~~~~i~~~~l~~~~~~~~~~lt~~qf~~~  160 (336)
                      +||+|||||||||||||||++.|+|||||||||||++|||++||||||..|++.+++...+.....+ ..+|+.++|+.|
T Consensus       140 ~nVe~IVAPyEADAQlayL~~~~~i~~IITEDSDLl~fGc~~vifK~d~~G~~le~~~~~l~~~~~l-~~~~~~ekfr~m  218 (556)
T KOG2518|consen  140 QNVEYIVAPYEADAQLAYLEREGIVDAIITEDSDLLVFGCKKVIFKMDSFGNGLEINRSKLPECKPL-GDKFTEEKFRRM  218 (556)
T ss_pred             cCCceEecCccccchhHHHHhcCcceEEEeccccccccCchhheeeccCCCCcccccHhhhhhcccc-ccccCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998888876554 367999999999


Q ss_pred             HHHhCCCCCCCCCCCCHHHHHHHHHHcCCCcHHHHHHHHhhhcccCcccccchhHHHHHHhHhhhhccCceecCCCCcee
Q psy11827        161 CILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVV  240 (336)
Q Consensus       161 ~iL~GcDy~~~ipgiG~ktA~kli~~~~~~si~~vl~~~~~~~k~~~~~~~~~~y~~~f~~A~~~F~~~~V~dP~~~~~~  240 (336)
                      |||+||||++||||||++||+++|++|.+  .+.++..+..  +  +++.+|++|++.|.+|..||+||+||||..++++
T Consensus       219 ciLSGCDYl~slpGvGl~tA~k~l~k~~~--~d~vi~~~~~--~--~~l~Vpd~y~~~F~~A~~tF~hQrVydP~~k~~~  292 (556)
T KOG2518|consen  219 CILSGCDYLSSLPGVGLATAHKLLSKYNT--PDRVIISHLL--K--KKLTVPDDYIENFERANLTFLHQRVYDPIEKKLI  292 (556)
T ss_pred             HHhcCCcccccCccccHHHHHHHHHhcCc--HHHHHHHHHh--c--cCCcCCHHHHHHHHHHHHhhhhhheeCchHhhhh
Confidence            99999999999999999999999999974  5666633322  2  4578999999999999999999999999999999


Q ss_pred             ECCCCCCCCCccchhhhcccCCCCCHHHHHHHHcCCCCcccccccccCCCCCCC
Q psy11827        241 PLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSEE  294 (336)
Q Consensus       241 ~L~~~~~~~~~~~~~~~~~G~~~l~~~~~~~ia~G~~~p~t~~~~~~~~p~~~~  294 (336)
                      ||+|++..++++++.+  +|.. .+++.+..+|.|+.+|.|++.+++|.|.+.+
T Consensus       293 ~L~~~~~~l~~~~~~~--~g~~-~~~~~av~~a~g~~~~~t~~~~~~~~~~~~~  343 (556)
T KOG2518|consen  293 HLNPIEDELDNEDLEF--LGPL-KDPSVAVEIALGNKDPITFKRIDDHKPHTAP  343 (556)
T ss_pred             cCCchhhhcchhhHhh--cccc-cCcchhhhhhhccCCccchhhhhhcccccCC
Confidence            9999999998899999  9998 9999999999999999999999999999655

>PTZ00217 flap endonuclease-1; Provisional Back     alignment and domain information
>cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases Back     alignment and domain information
>PRK03980 flap endonuclease-1; Provisional Back     alignment and domain information
>TIGR03674 fen_arch flap structure-specific endonuclease Back     alignment and domain information
>KOG2519|consensus Back     alignment and domain information
>TIGR00600 rad2 DNA excision repair protein (rad2) Back     alignment and domain information
>PF00867 XPG_I: XPG I-region; InterPro: IPR006086 This entry represents endonucleases that cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment Back     alignment and domain information
>COG0258 Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00475 53EXOc 5'-3' exonuclease Back     alignment and domain information
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes Back     alignment and domain information
>KOG2520|consensus Back     alignment and domain information
>PRK14976 5'-3' exonuclease; Provisional Back     alignment and domain information
>PRK05755 DNA polymerase I; Provisional Back     alignment and domain information
>TIGR00593 pola DNA polymerase I Back     alignment and domain information
>smart00484 XPGI Xeroderma pigmentosum G I-region Back     alignment and domain information
>PRK09482 flap endonuclease-like protein; Provisional Back     alignment and domain information
>cd00080 HhH2_motif Helix-hairpin-helix class 2 (Pol1 family) motif Back     alignment and domain information
>PHA00439 exonuclease Back     alignment and domain information
>smart00279 HhH2 Helix-hairpin-helix class 2 (Pol1 family) motifs Back     alignment and domain information
>PF00752 XPG_N: XPG N-terminal domain; InterPro: IPR006085 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer Back     alignment and domain information
>smart00485 XPGN Xeroderma pigmentosum G N-region Back     alignment and domain information
>TIGR00600 rad2 DNA excision repair protein (rad2) Back     alignment and domain information
>PF12813 XPG_I_2: XPG domain containing Back     alignment and domain information
>PHA02567 rnh RnaseH; Provisional Back     alignment and domain information
>PF01367 5_3_exonuc: 5'-3' exonuclease, C-terminal SAM fold; InterPro: IPR020045 This entry represents the C-terminal domain of 5' to 3' exonucleases Back     alignment and domain information
>COG5366 Protein involved in propagation of M2 dsRNA satellite of L-A virus [General function prediction only] Back     alignment and domain information
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities Back     alignment and domain information
>PHA03065 Hypothetical protein; Provisional Back     alignment and domain information
>PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses Back     alignment and domain information
>PF03159 XRN_N: XRN 5'-3' exonuclease N-terminus; InterPro: IPR004859 Signatures of this entry align residues towards the N terminus of several proteins with multiple functions Back     alignment and domain information
>PF12247 MKT1_N: Temperature dependent protein affecting M2 dsRNA replication; InterPro: IPR022040 This domain family is found in eukaryotes, and is typically between 231 and 255 amino acids in length Back     alignment and domain information
>KOG2045|consensus Back     alignment and domain information
>COG5049 XRN1 5'-3' exonuclease [DNA replication, recombination, and repair / Cell division and chromosome partitioning / Translation] Back     alignment and domain information
>KOG2044|consensus Back     alignment and domain information
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] Back     alignment and domain information
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
3qea_Z352 Crystal Structure Of Human Exonuclease 1 Exo1 (Wt) 1e-60
3qe9_Y352 Crystal Structure Of Human Exonuclease 1 Exo1 (D173 8e-60
1mc8_A343 Crystal Structure Of Flap Endonuclease-1 R42e Mutan 3e-12
1rxv_A336 Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna 5e-12
1a76_A326 Flap Endonuclease-1 From Methanococcus Jannaschii L 1e-11
2izo_A346 Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex L 4e-10
3ory_A363 Crystal Structure Of Flap Endonuclease 1 From Hyper 2e-09
1b43_A340 Fen-1 From P. Furiosus Length = 340 4e-09
3q8k_A341 Crystal Structure Of Human Flap Endonuclease Fen1 ( 7e-08
1ul1_X379 Crystal Structure Of The Human Fen1-Pcna Complex Le 1e-07
3q8m_A341 Crystal Structure Of Human Flap Endonuclease Fen1 ( 6e-07
>pdb|3QEA|Z Chain Z, Crystal Structure Of Human Exonuclease 1 Exo1 (Wt) In Complex With Dna (Complex Ii) Length = 352 Back     alignment and structure 
Iteration: 1

 Score =  230 bits (586), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 126/292 (43%), Positives = 189/292 (64%), Gaps = 6/292 (2%)
Query: 1   MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
           MK+++MLL+H IK I+VFDG  LP+K+  E  RR++R ++  K  +LL   + SEA+   
Sbjct: 60  MKFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECF 119
Query: 61  RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
            +S+++TH MA  VI+A R++GVDC+VAP+EADAQ+AYLN AG    +ITEDSDLL FG 
Sbjct: 120 TRSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSDLLAFGC 179
Query: 121 KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
           KK+I K+D  GN   +D+ +L    ++    FT+ KFRYMCILSGCDY + ++G+GL KA
Sbjct: 180 KKVILKMDQFGNGLEIDQARLGMCRQLGDV-FTEEKFRYMCILSGCDYLSSLRGIGLAKA 238
Query: 181 KDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVV 240
              +    +PD    ++KI  Y K+   + + ++++  F   N  FLYQ V+DP+ ++++
Sbjct: 239 CKVLRLANNPDIVKVIKKIGHYLKMN--ITVPEDYINGFIRANNTFLYQLVFDPIKRKLI 296
Query: 241 PLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDS 292
           PLN  E ++  E    LS     +    A Q+ALGN D  + E++D +NPD+
Sbjct: 297 PLNAYEDDVDPET---LSYAGQYVDDSIALQIALGNKDINTFEQIDDYNPDT 345
>pdb|3QE9|Y Chain Y, Crystal Structure Of Human Exonuclease 1 Exo1 (D173a) In Complex With Dna (Complex I) Length = 352 Back     alignment and structure
>pdb|1MC8|A Chain A, Crystal Structure Of Flap Endonuclease-1 R42e Mutant From Pyrococcus Horikoshii Length = 343 Back     alignment and structure
>pdb|1RXV|A Chain A, Crystal Structure Of A. Fulgidus Fen-1 Bound To Dna Length = 336 Back     alignment and structure
>pdb|1A76|A Chain A, Flap Endonuclease-1 From Methanococcus Jannaschii Length = 326 Back     alignment and structure
>pdb|2IZO|A Chain A, Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex Length = 346 Back     alignment and structure
>pdb|3ORY|A Chain A, Crystal Structure Of Flap Endonuclease 1 From Hyperthermophilic Archaeon Desulfurococcus Amylolyticus Length = 363 Back     alignment and structure
>pdb|1B43|A Chain A, Fen-1 From P. Furiosus Length = 340 Back     alignment and structure
>pdb|3Q8K|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (Wt) In Complex With Product 5'-Flap Dna, Sm3+, And K+ Length = 341 Back     alignment and structure
>pdb|1UL1|X Chain X, Crystal Structure Of The Human Fen1-Pcna Complex Length = 379 Back     alignment and structure
>pdb|3Q8M|A Chain A, Crystal Structure Of Human Flap Endonuclease Fen1 (D181a) In Complex With Substrate 5'-Flap Dna And K+ Length = 341 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query336
3qe9_Y352 Exonuclease 1; exonuclease, hydrolase-DNA complex; 2e-82
3q8k_A341 Flap endonuclease 1; helix-3 turn-helix, hydrophob 1e-65
1ul1_X379 Flap endonuclease-1; protein complex, DNA-binding 2e-64
1rxw_A336 Flap structure-specific endonuclease; helical clam 2e-58
1a76_A326 Flap endonuclease-1 protein; 5'-3' EXO/endo nuclea 5e-57
3ory_A363 Flap endonuclease 1; hydrolase; 2.00A {Desulfuroco 7e-57
2izo_A346 FEN1, flap structure-specific endonuclease; hydrol 1e-55
1b43_A340 Protein (FEN-1); nuclease, DNA repair, DNA replica 1e-55
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z* Length = 352 Back     alignment and structure
 Score =  253 bits (646), Expect = 2e-82
 Identities = 124/292 (42%), Positives = 187/292 (64%), Gaps = 6/292 (2%)

Query: 1   MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
           MK+++MLL+H IK I+VFDG  LP+K+  E  RR++R ++  K  +LL   + SEA+   
Sbjct: 60  MKFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECF 119

Query: 61  RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
            +S+++TH MA  VI+A R++GVDC+VAP+EADAQ+AYLN AG    +ITEDS LL FG 
Sbjct: 120 TRSINITHAMAHKVIKAARSQGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSALLAFGC 179

Query: 121 KKIIYKLDLSGNCCFMDREKLPSALKMPLAKFTDAKFRYMCILSGCDYWTGIKGMGLKKA 180
           KK+I K+D  GN   +D+ +L    ++    FT+ KFRYMCILSGCDY + ++G+GL KA
Sbjct: 180 KKVILKMDQFGNGLEIDQARLGMCRQLGD-VFTEEKFRYMCILSGCDYLSSLRGIGLAKA 238

Query: 181 KDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKEVV 240
              +    +PD    ++KI  Y K+   + + ++++  F   N  FLYQ V+DP+ ++++
Sbjct: 239 CKVLRLANNPDIVKVIKKIGHYLKMN--ITVPEDYINGFIRANNTFLYQLVFDPIKRKLI 296

Query: 241 PLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDS 292
           PLN  E ++  E  S        +    A Q+ALGN D  + E++D +NPD+
Sbjct: 297 PLNAYEDDVDPETLSYAGQY---VDDSIALQIALGNKDINTFEQIDDYNPDT 345
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A* Length = 341 Back     alignment and structure
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2 Length = 379 Back     alignment and structure
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A Length = 336 Back     alignment and structure
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A Length = 326 Back     alignment and structure
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus} Length = 363 Back     alignment and structure
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus} Length = 346 Back     alignment and structure
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A Length = 340 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query336
3qe9_Y352 Exonuclease 1; exonuclease, hydrolase-DNA complex; 100.0
3q8k_A341 Flap endonuclease 1; helix-3 turn-helix, hydrophob 100.0
3ory_A363 Flap endonuclease 1; hydrolase; 2.00A {Desulfuroco 100.0
1b43_A340 Protein (FEN-1); nuclease, DNA repair, DNA replica 100.0
2izo_A346 FEN1, flap structure-specific endonuclease; hydrol 100.0
1ul1_X379 Flap endonuclease-1; protein complex, DNA-binding 100.0
1a76_A326 Flap endonuclease-1 protein; 5'-3' EXO/endo nuclea 100.0
1rxw_A336 Flap structure-specific endonuclease; helical clam 100.0
1exn_A290 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Ent 99.94
1bgx_T 832 TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhi 99.92
3h7i_A305 Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonu 99.29
3pie_A 1155 5'->3' exoribonuclease (XRN1); beta berrel, tudor 97.93
2y35_A 1140 LD22664P; hydrolase-DNA complex, RNA degradation, 97.93
3fqd_A 899 Protein DHP1, 5'-3' exoribonuclease 2; protein-pro 97.9
2a1j_A63 DNA repair endonuclease XPF; XPF, xeroderma pigmen 91.23
1z00_B84 DNA repair endonuclease XPF; helix-hairpin-helix, 89.52
1kft_A78 UVRC, excinuclease ABC subunit C; helix-hairpin-he 84.92
1z00_A89 DNA excision repair protein ERCC-1; helix-hairpin- 84.75
1x2i_A75 HEF helicase/nuclease; alpha helix, helix-hairpin- 83.92
2a1j_B91 DNA excision repair protein ERCC-1; XPF, xeroderma 81.2
>3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z* Back     alignment and structure
Probab=100.00  E-value=1.2e-75  Score=570.08  Aligned_cols=289  Identities=43%  Similarity=0.732  Sum_probs=269.2

Q ss_pred             ChHHHHHHhCCCEEEEEecCCCCccchhhHHHHHhhhhhhHHHHHHHHhhcchHHHHHhhhhcccchHHHHHHHHHHHHH
Q psy11827          1 MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRA   80 (336)
Q Consensus         1 mk~i~~L~~~gI~PifVFDG~~~p~K~~t~~~R~~~r~~~~~~a~~~~~~g~~~~a~~~f~~~~~it~~m~~~l~~~L~~   80 (336)
                      ++++++|+++||+|||||||.++|.|+.++.+|+++|+++.++||+++++|+.++|+++|+++++||++|+..++++|+.
T Consensus        60 ~r~l~~L~~~gI~PvfVFDG~~~p~Kk~~~~~Rr~~r~~~~~~~~~~~~~g~~~~a~~~f~~~~~vt~~~~~~i~~~L~~  139 (352)
T 3qe9_Y           60 MKFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECFTRSINITHAMAHKVIKAARS  139 (352)
T ss_dssp             HHHHHHHHHTTCEEEEEECCSCCTTTHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHGGGCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCEEEEEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            35788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceecCccchHHHHHHHHHcCCeEEEecCCCceEeecccEEEEecCCCCCeeeeccccccccccCCcCC--CCHHHHH
Q psy11827         81 RGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNCCFMDREKLPSALKMPLAK--FTDAKFR  158 (336)
Q Consensus        81 ~gV~~ivAPyEADAQlA~L~~~g~vdaViT~DSDll~fg~~~vi~kl~~~g~~~~i~~~~l~~~~~~~~~~--lt~~qf~  158 (336)
                      +||+|++||||||||||||+++|++++|+|+|+|+|+||+++|+++++..+++..++.+.+..   +..++  ++++||+
T Consensus       140 ~gIp~i~ap~EADaqiA~La~~g~~~~I~S~D~Dll~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~g~~l~~~q~i  216 (352)
T 3qe9_Y          140 QGVDCLVAPYEADAQLAYLNKAGIVQAIITEDSALLAFGCKKVILKMDQFGNGLEIDQARLGM---CRQLGDVFTEEKFR  216 (352)
T ss_dssp             TTCEEEECSSCHHHHHHHHHHTTSCSEEECSCGGGGGGTCSEEEESCCTTSEEEEEEGGGGTT---CCTTCSSCCHHHHH
T ss_pred             cCCcEEECCcchHHHHHHHHHCCCeEEEEeCCcCcccccCCeEEEeccCCCCcEEEeHHHHHH---HHHhCCCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999888777787766532   33567  9999999


Q ss_pred             HHHHHhCCCCCCCCCCCCHHHHHHHHHHcCCCcHHHHHHHHhhhcccCcccccchhHHHHHHhHhhhhccCceecCCCCc
Q psy11827        159 YMCILSGCDYWTGIKGMGLKKAKDYVFSIMDPDFENALRKINVYGKIGSYVKITKEFLTSFHNTNLMFLYQPVYDPVSKE  238 (336)
Q Consensus       159 ~~~iL~GcDy~~~ipgiG~ktA~kli~~~~~~si~~vl~~~~~~~k~~~~~~~~~~y~~~f~~A~~~F~~~~V~dP~~~~  238 (336)
                      |+|+|+||||+|||||||+|||++||++|++++++++++++.++++  .+..+|++|.+.|.+|+.||+||+||||.+++
T Consensus       217 d~~~L~G~D~~pgv~GiG~ktA~kli~~~~~~~l~~il~~~~~~l~--~~~~vp~~~~~~~~~A~~~F~~q~V~dp~~~~  294 (352)
T 3qe9_Y          217 YMCILSGCDYLSSLRGIGLAKACKVLRLANNPDIVKVIKKIGHYLK--MNITVPEDYINGFIRANNTFLYQLVFDPIKRK  294 (352)
T ss_dssp             HHHHHHCCSSSCCCTTCCHHHHHHHHHHCCCSCHHHHHTTHHHHHT--CCCCCCHHHHHHHHHHHHHHHHCEEEETTTTE
T ss_pred             HHHHhcCCCCCCCCCCeeHHHHHHHHHHhCCCCHHHHHHHHHhhhc--cCCCCCHHHHHHHHHHHHHhCCCEEECCCCCe
Confidence            9999999999999999999999999999977789999999998876  45689999999999999999999999999999


Q ss_pred             eeECCCCCCCCCccchhhhcccCCCCCHHHHHHHHcCCCCcccccccccCCCCCCCCCC
Q psy11827        239 VVPLNPLESEMRDEVFSQLSLKELELPKDQAFQLALGNLDPFSLEEMDQWNPDSEENLP  297 (336)
Q Consensus       239 ~~~L~~~~~~~~~~~~~~~~~G~~~l~~~~~~~ia~G~~~p~t~~~~~~~~p~~~~~~~  297 (336)
                      +++|+|+|++++++++++  +|+. +++++|++||.|++||+|+|+|++|+|++++++.
T Consensus       295 ~~~l~~~~~~~~~~~~~~--~G~~-~~~~~~~~ia~G~~~p~t~~~~~~~~~~~~~~~~  350 (352)
T 3qe9_Y          295 LIPLNAYEDDVDPETLSY--AGQY-VDDSIALQIALGNKDINTFEQIDDYNPDTAMPAH  350 (352)
T ss_dssp             EEESSCCCSSCCGGGCCT--TCCC-CCHHHHHHHHHTCBCTTTCCBCCCCCTTCC----
T ss_pred             EeeCCCCCCCCChhhhhh--cCCC-CCHHHHHHHhCCCCCcccccccccCCCCCCCCCC
Confidence            999999999999999988  9997 9999999999999999999999999999987543
>3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A* Back     alignment and structure
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus} Back     alignment and structure
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A Back     alignment and structure
>2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus} Back     alignment and structure
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2 Back     alignment and structure
>1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A Back     alignment and structure
>1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A Back     alignment and structure
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A Back     alignment and structure
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A* Back     alignment and structure
>3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A Back     alignment and structure
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A Back     alignment and structure
>2y35_A LD22664P; hydrolase-DNA complex, RNA degradation, exonuclease 5'-3', R interference; 3.20A {Drosophila melanogaster} Back     alignment and structure
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA proces nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe} Back     alignment and structure
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* Back     alignment and structure
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* Back     alignment and structure
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 Back     alignment and structure
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 Back     alignment and structure
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 336
d1a77a2207 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuc 8e-32
d1rxwa2217 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuc 2e-29
d1b43a2219 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuc 3e-28
d1ul1x2216 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuc 3e-27
d1ul1x1140 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nu 5e-10
d1rxwa1105 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nu 0.002
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 207 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: PIN domain-like
superfamily: PIN domain-like
family: 5' to 3' exonuclease catalytic domain
domain: Flap endonuclease-1 (Fen-1 nuclease)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  116 bits (291), Expect = 8e-32
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 1/147 (0%)

Query: 1   MKYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHL 60
                 LL + I  I VFDG     KE T + RR+ ++  + K  E +  +   EA  + 
Sbjct: 61  FYKTIHLLENDITPIWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKEDFEEAAKYA 120

Query: 61  RQSVDVTHKMALNVIQACRARGVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGA 120
           ++   +T KM  N        G+  + AP E +AQ +Y+   G    V+++D D L++GA
Sbjct: 121 KRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKKGDVWAVVSQDYDALLYGA 180

Query: 121 KKIIYKLDLSGNCC-FMDREKLPSALK 146
            +++  L  +      ++  ++   L+
Sbjct: 181 PRVVRNLTTTKEMPELIELNEVLEDLR 207
>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 217 Back     information, alignment and structure
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 219 Back     information, alignment and structure
>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} Length = 216 Back     information, alignment and structure
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 105 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query336
d1b43a2219 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyr 100.0
d1rxwa2217 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Arc 100.0
d1a77a2207 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Met 100.0
d1ul1x2216 Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo 100.0
d1ul1x1140 Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo 99.71
d1rxwa1105 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Arc 99.62
d1a77a1108 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Met 99.59
d1b43a1120 Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyr 99.54
d1xo1a1105 T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726] 99.01
d1cmwa1116 5' to 3' exonuclease domain of DNA polymerase Taq 98.5
d1tfra2169 T4 RNase H {Bacteriophage T4 [TaxId: 10665]} 97.45
d1cmwa2164 5' to 3' exonuclease domain of DNA polymerase Taq 97.39
d1xo1a2167 T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726] 97.01
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 93.6
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 93.12
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 92.3
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 91.56
d2i1qa160 DNA repair protein Rad51, N-terminal domain {Archa 86.18
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 85.82
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 85.21
d2bcqa257 DNA polymerase lambda {Human (Homo sapiens) [TaxId 85.05
d2a1jb178 DNA excision repair protein ERCC-1 {Human (Homo sa 84.95
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 84.56
d1jmsa360 Terminal deoxynucleotidyl transferase {Mouse (Mus 83.66
d2fmpa257 DNA polymerase beta {Human (Homo sapiens) [TaxId: 83.61
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 83.31
d1pzna161 DNA repair protein Rad51, N-terminal domain {Archa 81.99
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 80.69
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PIN domain-like
superfamily: PIN domain-like
family: 5' to 3' exonuclease catalytic domain
domain: Flap endonuclease-1 (Fen-1 nuclease)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=5.8e-36  Score=271.12  Aligned_cols=132  Identities=27%  Similarity=0.343  Sum_probs=127.3

Q ss_pred             hHHHHHHhCCCEEEEEecCCCCccchhhHHHHHhhhhhhHHHHHHHHhhcchHHHHHhhhhcccchHHHHHHHHHHHHHc
Q psy11827          2 KYIHMLLAHKIKVIMVFDGRHLPAKEATEEDRRKKRDSHKAKAAELLILDRGSEAQSHLRQSVDVTHKMALNVIQACRAR   81 (336)
Q Consensus         2 k~i~~L~~~gI~PifVFDG~~~p~K~~t~~~R~~~r~~~~~~a~~~~~~g~~~~a~~~f~~~~~it~~m~~~l~~~L~~~   81 (336)
                      +++.+|+++||+|||||||.++|.|+.|..+|+++|+++.++++.+.++|+.+++.+++++++.+|++++..++++|+.+
T Consensus        62 ~r~~~Ll~~~I~pVFVFDG~~~~~K~~~~~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~lL~~~  141 (219)
T d1b43a2          62 YRTINLMEAGIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELM  141 (219)
T ss_dssp             HHHHHHHHTTCEEEEEECCSCCCCSSCSSTTCCCCTTHHHHHHHHHHHHSCHHHHHHHHHTSGGGTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCeEEEEeCCCCCHHHhhhHHhhhhhHHHHHHHhhhhhhccchhhhhhhhcccccCCHHHHHHHHHHHHHc
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceecCccchHHHHHHHHHcCCeEEEecCCCceEeecccEEEEecCCCCCe
Q psy11827         82 GVDCIVAPFEADAQMAYLNIAGYADYVITEDSDLLVFGAKKIIYKLDLSGNC  133 (336)
Q Consensus        82 gV~~ivAPyEADAQlA~L~~~g~vdaViT~DSDll~fg~~~vi~kl~~~g~~  133 (336)
                      ||+||+||||||||||||+++|+||+|+|+|||+|+|||++||++++.+|..
T Consensus       142 gv~~i~Ap~EAdaqcA~L~~~g~vd~v~SeDsD~L~fG~~~vl~~l~~~~~~  193 (219)
T d1b43a2         142 GIPIVQAPSEGEAQAAYMAAKGSVYASASQDYDSLLFGAPRLVRNLTITGKR  193 (219)
T ss_dssp             TCCEEECSSCHHHHHHHHHHHTSSSEEECSSSHHHHTTCSEEEESTTTCEEE
T ss_pred             CCceeeCchHHHHHHHHHHhcCCeEEEEecccceeeeCCCEEEEecccccCc
Confidence            9999999999999999999999999999999999999999999999987653
>d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]} Back     information, alignment and structure
>d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1tfra2 c.120.1.2 (A:12-180) T4 RNase H {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1cmwa2 c.120.1.2 (A:10-173) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]} Back     information, alignment and structure
>d1xo1a2 c.120.1.2 (A:19-185) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure