Psyllid ID: psy11841

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------24
Protein Sequence
MGSKVEYVETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIANKGRLGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLAILAFILATRHIKLQPEPLYVALVTIAVMLLFFFMQPTSVYMVAAWLQIIS
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEccccEEEEEEEEEccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccccEEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHEEHHHHccHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MGSKVEYVETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFltpewigiankgrlglwsscefdvngfeECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIyplgwesakaqeicgptasrynlgqcdiKWAYILAIIGCLDVIVLAILAFILATRhiklqpepLYVALVTIAVMLLFFFMQPTSVYMVAAWLQIIS
Flexible Loop (DISEMBL)
MGSKVEYVETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIANKGRLGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLAILAFILATRHIKLQPEPLYVALVTIAVMLLFFFMQPTSVYMVAAWLQIIS
Low Complexity Region (SEG)
MGSKVEYVETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIANKGRLGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLAILAFILATRHIKLQPEPLYVALVTIAVMLLFFFMQPTSVYMVAAWLQIIS
Disordered region (IsUnstruct)
******YVETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIANKGRLGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLAILAFILATRHIKLQPEPLYVALVTIAVMLLFFFMQPTSVYMVAAWLQII*
Disordered Region (DISOPRED)
***********QIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIANKGRLGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLAILAFILATRH***********LVTIAVMLLFFFMQPTSVYMVAAWLQIIS
Disordered Region (DISEMBL)
MGSKVEYVETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIANKGRLGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLAILAFILATRHIKLQPEPLYVALVTIAVMLLFFFMQPTSVYMVAAWLQIIS
Disordered Region (DISPRO)
**SKVEYVETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIANKGRLGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLAILAFILATRHIKLQPEPLYVALVTIAVMLLFFFMQPTSVYMVAAWLQIIS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSKVEYVETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIANKGRLGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLAILAFILATRHIKLQPEPLYVALVTIAVMLLFFFMQPTSVYMVAAWLQIIS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	238	2.2.26 [Sep-21-2011]
Q86UP9	222	Lipoma HMGIC fusion partn	yes	N/A	0.823	0.882	0.419	2e-43
Q9CTN8	222	Lipoma HMGIC fusion partn	yes	N/A	0.823	0.882	0.419	1e-42
Q66IV3	218	Lipoma HMGIC fusion partn	N/A	N/A	0.823	0.899	0.424	2e-42
Q7TSY2	247	Lipoma HMGIC fusion partn	no	N/A	0.831	0.801	0.411	6e-42
Q5U4E0	247	Lipoma HMGIC fusion partn	no	N/A	0.831	0.801	0.411	6e-42
Q17R16	247	Lipoma HMGIC fusion partn	no	N/A	0.831	0.801	0.411	6e-42
Q7Z7J7	247	Lipoma HMGIC fusion partn	no	N/A	0.831	0.801	0.411	9e-42
Q6DHB5	216	Lipoma HMGIC fusion partn	no	N/A	0.836	0.921	0.397	2e-40
Q7ZZL8	221	Tetraspan membrane protei	no	N/A	0.840	0.904	0.404	7e-40
Q8TAF8	219	Tetraspan membrane protei	no	N/A	0.823	0.894	0.383	5e-37

>sp|Q86UP9|LHPL3_HUMAN Lipoma HMGIC fusion partner-like 3 protein OS=Homo sapiens GN=LHFPL3 PE=2 SV=2

 Score =  175 bits (444), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/205 (41%), Positives = 123/205 (60%), Gaps = 9/205 (4%)

Query: 9   ETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA----NKGRLGLWSSC 64
           E +++Y TNYVRNS+A+GVLW IFT+CFA++  V F+ P WIG        G  GL+  C
Sbjct: 6   EAAKLYHTNYVRNSRAIGVLWAIFTICFAIVNVVCFIQPYWIGDGVDTPQAGYFGLFHYC 65

Query: 65  EFDVNGFEE---CTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSV 121
               NGF     C G F +F  + + AFK ++    +S+ L +  I    LFFF    +V
Sbjct: 66  I--GNGFSRELTCRGSFTDFSTLPSGAFKAASFFIGLSMMLIIACIICFTLFFFCNTATV 123

Query: 122 YMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGC 181
           Y + AW+Q+ SA C++   +I+P GW+S + + +CG    +Y LG C ++WAYILAIIG 
Sbjct: 124 YKICAWMQLTSAACLVLGCMIFPDGWDSDEVKRMCGEKTDKYTLGACSVRWAYILAIIGI 183

Query: 182 LDVIVLAILAFILATRHIKLQPEPL 206
           LD ++L+ LAF+L  R   L  E L
Sbjct: 184 LDALILSFLAFVLGNRQDSLMAEEL 208

Homo sapiens (taxid: 9606)

>sp|Q9CTN8|LHPL3_MOUSE Lipoma HMGIC fusion partner-like 3 protein OS=Mus musculus GN=Lhfpl3 PE=2 SV=2

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/205 (41%), Positives = 122/205 (59%), Gaps = 9/205 (4%)

Query: 9   ETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA----NKGRLGLWSSC 64
           E +++Y TNYVRNS+A+GVLW IFT+CFA+I  V F+ P WIG        G  GL+  C
Sbjct: 6   EAAKLYHTNYVRNSRAIGVLWAIFTICFAIINVVCFIQPYWIGDGVDTPQAGYFGLFHYC 65

Query: 65  EFDVNGFEE---CTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSV 121
               NGF     C G F +F  + + AFK ++    +S+ L +  I    LFFF    +V
Sbjct: 66  I--GNGFSRELTCRGSFTDFSTLPSGAFKAASFFIGLSMMLIIACIVCFTLFFFCNTATV 123

Query: 122 YMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGC 181
           Y + AW+Q+  A C++   +I+P GW+S +A+ +CG    +Y LG C ++WAYILAIIG 
Sbjct: 124 YKICAWMQLTFAACLVLGCMIFPDGWDSDEAKRMCGEKTDKYTLGACSVRWAYILAIIGI 183

Query: 182 LDVIVLAILAFILATRHIKLQPEPL 206
           LD ++L+ LA +L  R   L  E L
Sbjct: 184 LDALILSFLAVVLGNRQDSLMAEEL 208

Mus musculus (taxid: 10090)

>sp|Q66IV3|LHPL3_XENLA Lipoma HMGIC fusion partner-like 3 protein OS=Xenopus laevis GN=lhfpl3 PE=2 SV=1

 Score =  172 bits (436), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/205 (42%), Positives = 125/205 (60%), Gaps = 9/205 (4%)

Query: 9   ETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA----NKGRLGLWSSC 64
           E ++IY  NY+RNS A+GVLW IFT+CFA++  V F+ P WIG        G  GL+  C
Sbjct: 6   EAAKIYHANYIRNSGAIGVLWAIFTICFAIVNIVCFIQPYWIGDGVDTPQAGYFGLFHFC 65

Query: 65  EFDVNGFEE---CTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSV 121
               +GF +   CTG F EF  I + AFK ++    +S+TL +  I    LFFF    +V
Sbjct: 66  I--GSGFSKELTCTGSFTEFSSIPSGAFKAASFFIGLSMTLIIGCIVSFGLFFFCNTATV 123

Query: 122 YMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGC 181
           Y + AW+Q+ SA C++   +I+P GW++ + + +CG    +Y+LG C ++WAYILAIIG 
Sbjct: 124 YKICAWMQLCSAACLVLGCMIFPDGWDADEVKRMCGEKTDKYSLGACSVRWAYILAIIGI 183

Query: 182 LDVIVLAILAFILATRHIKLQPEPL 206
           LD ++L+ LAF+L  R   L  E L
Sbjct: 184 LDALILSFLAFVLGNRLDSLMAEQL 208

Xenopus laevis (taxid: 8355)

>sp|Q7TSY2|LHPL4_RAT Lipoma HMGIC fusion partner-like protein 4 OS=Rattus norvegicus GN=Lhfpl4 PE=2 SV=1

 Score =  171 bits (432), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 84/204 (41%), Positives = 127/204 (62%), Gaps = 6/204 (2%)

Query: 9   ETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA----NKGRLGLWSSC 64
           E S++Y  +Y+RNS+A+GVLW IFT+CFA+I  V F+ P W+G +      G  GL+  C
Sbjct: 6   EASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFGLFHYC 65

Query: 65  -EFDVNGFE-ECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVY 122
               + G E  C G F +F  I ++AFK +    L+S+ L L  I    LFFF    +VY
Sbjct: 66  VGSGLAGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFALFFFCNTATVY 125

Query: 123 MVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCL 182
            + AW+Q+++ALC++   +I+P GW++   +++CG    +Y+LG C ++WAYILAIIG L
Sbjct: 126 KICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIGIL 185

Query: 183 DVIVLAILAFILATRHIKLQPEPL 206
           + ++L+ LAF+L  R   L  E L
Sbjct: 186 NALILSFLAFVLGNRQTDLLQEEL 209

Rattus norvegicus (taxid: 10116)

>sp|Q5U4E0|LHPL4_MOUSE Lipoma HMGIC fusion partner-like 4 protein OS=Mus musculus GN=Lhfpl4 PE=2 SV=1

 Score =  171 bits (432), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 84/204 (41%), Positives = 127/204 (62%), Gaps = 6/204 (2%)

Query: 9   ETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA----NKGRLGLWSSC 64
           E S++Y  +Y+RNS+A+GVLW IFT+CFA+I  V F+ P W+G +      G  GL+  C
Sbjct: 6   EASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFGLFHYC 65

Query: 65  -EFDVNGFE-ECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVY 122
               + G E  C G F +F  I ++AFK +    L+S+ L L  I    LFFF    +VY
Sbjct: 66  VGSGLAGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFALFFFCNTATVY 125

Query: 123 MVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCL 182
            + AW+Q+++ALC++   +I+P GW++   +++CG    +Y+LG C ++WAYILAIIG L
Sbjct: 126 KICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIGIL 185

Query: 183 DVIVLAILAFILATRHIKLQPEPL 206
           + ++L+ LAF+L  R   L  E L
Sbjct: 186 NALILSFLAFVLGNRQTDLLQEEL 209

Mus musculus (taxid: 10090)

>sp|Q17R16|LHPL4_BOVIN Lipoma HMGIC fusion partner-like 4 protein OS=Bos taurus GN=LHFPL4 PE=2 SV=1

 Score =  171 bits (432), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 84/204 (41%), Positives = 126/204 (61%), Gaps = 6/204 (2%)

Query: 9   ETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA----NKGRLGLWSSC 64
           E S++Y  +Y+RNS+A+GVLW IFT+CFA+I  V F+ P W+G +      G  GL+  C
Sbjct: 6   EASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFGLFHYC 65

Query: 65  -EFDVNGFE-ECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVY 122
               + G E  C G F +F  I + AFK +    L+S+ L L  I    LFFF    +VY
Sbjct: 66  VGSGLAGRELTCRGSFTDFSTIPSGAFKAAAFFVLLSMVLILGCITCFALFFFCNTATVY 125

Query: 123 MVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCL 182
            + AW+Q+++ALC++   +I+P GW++   +++CG    +Y+LG C ++WAYILAIIG L
Sbjct: 126 KICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIGIL 185

Query: 183 DVIVLAILAFILATRHIKLQPEPL 206
           + ++L+ LAF+L  R   L  E L
Sbjct: 186 NALILSFLAFVLGNRQTDLLQEEL 209

Bos taurus (taxid: 9913)

>sp|Q7Z7J7|LHPL4_HUMAN Lipoma HMGIC fusion partner-like 4 protein OS=Homo sapiens GN=LHFPL4 PE=2 SV=1

 Score =  170 bits (430), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 84/204 (41%), Positives = 127/204 (62%), Gaps = 6/204 (2%)

Query: 9   ETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA----NKGRLGLWSSC 64
           E S++Y  +Y+RNS+A+GVLW IFT+CFA+I  V F+ P W+G +      G  GL+  C
Sbjct: 6   EASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFGLFHYC 65

Query: 65  -EFDVNGFE-ECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVY 122
               + G E  C G F +F  I ++AFK +    L+S+ L L  I    LFFF    +VY
Sbjct: 66  VGSGLAGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFSLFFFCNTATVY 125

Query: 123 MVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCL 182
            + AW+Q+++ALC++   +I+P GW++   +++CG    +Y+LG C ++WAYILAIIG L
Sbjct: 126 KICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIGIL 185

Query: 183 DVIVLAILAFILATRHIKLQPEPL 206
           + ++L+ LAF+L  R   L  E L
Sbjct: 186 NALILSFLAFVLGNRQTDLLQEEL 209

Homo sapiens (taxid: 9606)

>sp|Q6DHB5|LHPL3_DANRE Lipoma HMGIC fusion partner-like 3 protein OS=Danio rerio GN=lhfpl3 PE=2 SV=1

 Score =  165 bits (418), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/204 (39%), Positives = 119/204 (58%), Gaps = 5/204 (2%)

Query: 8   VETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA----NKGRLGLWSS 63
            E ++IY TNYVRNS+A+GVLW IFT  FA++  V F+ P WIG        G  GL+  
Sbjct: 5   TEAAKIYQTNYVRNSRAIGVLWAIFTTLFAIVNVVCFVQPYWIGDGMDTPQAGYFGLFHY 64

Query: 64  C-EFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVY 122
           C    ++    C G F EF  I ++AFK ++    +S+ L L  I    LFFF    +VY
Sbjct: 65  CIGSGMSRDLTCQGSFTEFGSIPSSAFKAASFFIGMSMVLVLSCIGCFALFFFCSTATVY 124

Query: 123 MVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCL 182
            +  W+Q+ +  C++   +IYP GW++ + + +CG    +Y +G C ++WAYILAI+G L
Sbjct: 125 KICGWMQLAAGTCLVLGCMIYPDGWDADEVKRMCGEGTDKYTIGACSVRWAYILAIMGIL 184

Query: 183 DVIVLAILAFILATRHIKLQPEPL 206
           D ++L+ LAF+L  R   L  E L
Sbjct: 185 DALILSFLAFVLGNRQDGLMSEEL 208

Danio rerio (taxid: 7955)

>sp|Q7ZZL8|TMHS_CHICK Tetraspan membrane protein of hair cell stereocilia homolog OS=Gallus gallus GN=LHFPL5 PE=2 SV=1

 Score =  164 bits (414), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 124/205 (60%), Gaps = 5/205 (2%)

Query: 9   ETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA----NKGRLGLWSSC 64
           E ++IY TNYVRN++A+GVLW +FTLCF++++ V F+ P WIG +      G  GL+S C
Sbjct: 9   EAARIYHTNYVRNARAMGVLWALFTLCFSILMVVTFIQPYWIGDSIDTPQAGYFGLFSYC 68

Query: 65  EFD-VNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYM 123
             + + G   C G   +F  I ++AFK +     +S  L + +I    LFFF    +VY 
Sbjct: 69  IGNALTGELICKGSPLDFGTIPSSAFKTAMFFVGISTFLIIGSILCFSLFFFCNAATVYK 128

Query: 124 VAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLD 183
           V AW+Q+ +A  ++   +IYP GW+S++ + +CG    +Y LG C ++WAYIL IIG LD
Sbjct: 129 VCAWMQLAAATGLMIGCLIYPDGWDSSEVKRMCGDKTDKYTLGACTVRWAYILCIIGILD 188

Query: 184 VIVLAILAFILATRHIKLQPEPLYV 208
            ++L+ LAF+L  R   L P    V
Sbjct: 189 ALILSFLAFVLGNRQDNLLPSDFKV 213

Gallus gallus (taxid: 9031)

>sp|Q8TAF8|TMHS_HUMAN Tetraspan membrane protein of hair cell stereocilia OS=Homo sapiens GN=LHFPL5 PE=1 SV=1

 Score =  154 bits (389), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 77/201 (38%), Positives = 120/201 (59%), Gaps = 5/201 (2%)

Query: 9   ETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA----NKGRLGLWSSC 64
           E ++IY TNYVRNS+AVGV+WG  T+CF+++V   F+ P WIG +      G  GL+S C
Sbjct: 9   EAAKIYHTNYVRNSRAVGVMWGTLTICFSVLVMALFIQPYWIGDSVNTPQAGYFGLFSYC 68

Query: 65  EFDVNGFEE-CTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYM 123
             +V   E  C G   +F  I + AFK +     + + L + +I    LFF     +VY 
Sbjct: 69  VGNVLSSELICKGGPLDFSSIPSRAFKTAMFFVALGMFLIIGSIICFSLFFICNTATVYK 128

Query: 124 VAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLD 183
           + AW+Q+ +A  ++   ++YP GW+S++ + +CG    +Y LG C I+WA++LAI+   D
Sbjct: 129 ICAWMQLAAATGLMIGCLVYPDGWDSSEVRRMCGEQTGKYTLGHCTIRWAFMLAILSIGD 188

Query: 184 VIVLAILAFILATRHIKLQPE 204
            ++L+ LAF+L  R  KL P+
Sbjct: 189 ALILSFLAFVLGYRQDKLLPD 209

May function in hair bundle morphogenesis.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
193638898	290	PREDICTED: lipoma HMGIC fusion partner-l	0.873	0.717	0.543	8e-67
389609015	287	tetraspan membrane protein in hair cell	0.865	0.717	0.561	4e-65
389614814	290	tetraspan membrane protein in hair cell	0.865	0.710	0.557	4e-64
242015612	316	conserved hypothetical protein [Pediculu	0.857	0.645	0.532	1e-62
91086645	282	PREDICTED: similar to CG12026 CG12026-PA	0.861	0.726	0.538	2e-62
332376571	282	unknown [Dendroctonus ponderosae]	0.865	0.730	0.547	1e-61
158294657	247	AGAP005724-PA [Anopheles gambiae str. PE	0.865	0.834	0.490	5e-61
307209858	295	Lipoma HMGIC fusion partner-like 4 prote	0.865	0.698	0.535	2e-60
194865022	265	GG14834 [Drosophila erecta] gi|190653005	0.865	0.777	0.514	3e-60
195336766	265	GM14457 [Drosophila sechellia] gi|195587	0.865	0.777	0.514	3e-60

>gi|193638898|ref|XP_001944253.1| PREDICTED: lipoma HMGIC fusion partner-like 3 protein-like [Acyrthosiphon pisum]

 Score =  259 bits (661), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 118/217 (54%), Positives = 162/217 (74%), Gaps = 9/217 (4%)

Query: 1   MGSKVEYVETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA----NKG 56
           MGSK+EYV++SQ+YATNYVRN+KAVGVLWGIFT+C+A+IV+VAF+TPEWIG      N  
Sbjct: 1   MGSKIEYVDSSQMYATNYVRNAKAVGVLWGIFTVCYAIIVAVAFITPEWIGDTTTSENPA 60

Query: 57  RLGLWSSCEFDVNGF----EECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLL 112
           R GLWSSC F  NG     E+C GK  +   I + A +++ +   VSV +A++ + ++L 
Sbjct: 61  RFGLWSSCYFG-NGVSTAVEDCQGKLEDLSNIPSVAIRVAAIFGSVSVCIAIIIVVMLLF 119

Query: 113 FFFMQPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKW 172
           FF  Q T+VY++  WL ++SA C+IAS+V++P+GW+S   Q+ CGP A  Y+LG C+ +W
Sbjct: 120 FFLFQSTTVYLICGWLHVLSAGCLIASIVVFPMGWDSPHIQKTCGPEAKSYSLGDCNFRW 179

Query: 173 AYILAIIGCLDVIVLAILAFILATRHIKLQPEPLYVA 209
           AY+LAII  +D ++L+ LAFILATRHIKLQPEPLY +
Sbjct: 180 AYLLAIIASVDALILSALAFILATRHIKLQPEPLYAS 216

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389609015|dbj|BAM18119.1| tetraspan membrane protein in hair cell stereocilia ortholog [Papilio xuthus]

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 118/210 (56%), Positives = 153/210 (72%), Gaps = 4/210 (1%)

Query: 1   MGSKVEYVETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIG---IANKGR 57
           MGSK+EYV++S +YATNYVRNSKA+GVLW IFT+C+A+I  VAF+TPEWIG        +
Sbjct: 1   MGSKIEYVDSSHLYATNYVRNSKAIGVLWAIFTICYAIISVVAFVTPEWIGDLETEYPRK 60

Query: 58  LGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQ 117
            GLW  C  D    E+C G+  +F  I+   FKI+TVL  ++V LAL TI  MLLFFF Q
Sbjct: 61  FGLWQICRAD-EAVEDCKGRLDDFFSINGLVFKIATVLVGLAVALALFTICAMLLFFFCQ 119

Query: 118 PTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILA 177
            T+V+ +  WLQ++SA C+++ V +YP GW     QE CGPTA +YN+G+C ++WAY+LA
Sbjct: 120 STTVFHICGWLQLLSAACLVSGVAVYPAGWSELAVQETCGPTADQYNIGRCHVRWAYLLA 179

Query: 178 IIGCLDVIVLAILAFILATRHIKLQPEPLY 207
           +IG LD IVLA LAFILATRH+KLQP+  Y
Sbjct: 180 VIGALDGIVLAALAFILATRHLKLQPDTAY 209

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389614814|dbj|BAM20424.1| tetraspan membrane protein in hair cell stereocilia ortholog [Papilio polytes]

 Score =  250 bits (638), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 117/210 (55%), Positives = 150/210 (71%), Gaps = 4/210 (1%)

Query: 1   MGSKVEYVETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIG---IANKGR 57
           MGSK+EYV++S +YATNYVRNSKA+GVLW IFT+C+A+I  VAF+TPEWIG        +
Sbjct: 1   MGSKIEYVDSSHLYATNYVRNSKAIGVLWAIFTICYAIISVVAFVTPEWIGDLETEYPRK 60

Query: 58  LGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQ 117
            GLW  C  D    ++C G+  +F  I+   FKI+TVL   +V LAL TI  MLLFFF Q
Sbjct: 61  FGLWQICRAD-EAVDDCKGRLDDFFSINGLVFKIATVLVGAAVALALFTICAMLLFFFCQ 119

Query: 118 PTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILA 177
            T+V+ +  WLQ+ SA C++  V +YP GW     QE CGPTA +YN+G+C ++WAY+LA
Sbjct: 120 STTVFHICGWLQLFSAACLVGGVAVYPAGWGELAVQETCGPTADQYNIGRCHVRWAYMLA 179

Query: 178 IIGCLDVIVLAILAFILATRHIKLQPEPLY 207
           +IG LD IVLA LAFILATRH+KLQP+  Y
Sbjct: 180 VIGALDGIVLAALAFILATRHLKLQPDTAY 209

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015612|ref|XP_002428447.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212513059|gb|EEB15709.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/214 (53%), Positives = 153/214 (71%), Gaps = 10/214 (4%)

Query: 1   MGSKVEYVETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA----NKG 56
           MGSK+EYVE+S +Y TNYVRN KAVGVLWGIFT+C+A+I+ V+F+TPEWIG      N G
Sbjct: 25  MGSKIEYVESSHVYVTNYVRNFKAVGVLWGIFTICYAIIIIVSFVTPEWIGDTSTSENPG 84

Query: 57  RLGLWSSC------EFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVM 110
           R GLW+ C      E +  G EEC G+  +F  I    FK +T+L  +SV +AL+TI  M
Sbjct: 85  RFGLWTRCFYRGSSELNGIGVEECVGQLDDFGSIVTVGFKAATILVAISVVVALLTICAM 144

Query: 111 LLFFFMQPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDI 170
           +L FF   T V+++  W+Q++SA  +   V+IYP GW S++ ++ICGP AS Y LG+C I
Sbjct: 145 ILLFFFPSTKVFLICGWMQLMSAAFLTLGVLIYPTGWNSSEVRQICGPNASSYELGECGI 204

Query: 171 KWAYILAIIGCLDVIVLAILAFILATRHIKLQPE 204
           +W+Y+LA IGC D ++LA LAFILAT+H+KLQPE
Sbjct: 205 RWSYLLAGIGCFDALILATLAFILATKHVKLQPE 238

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91086645|ref|XP_967184.1| PREDICTED: similar to CG12026 CG12026-PA [Tribolium castaneum] gi|270010387|gb|EFA06835.1| hypothetical protein TcasGA2_TC009778 [Tribolium castaneum]

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/210 (53%), Positives = 155/210 (73%), Gaps = 5/210 (2%)

Query: 1   MGSKVEYVETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIAN---KGR 57
           MGSK+EYV++SQIYAT+YVRNSKA+GVLW IFT+C+A+I  V+F+TPEWIG  +    G+
Sbjct: 1   MGSKIEYVDSSQIYATSYVRNSKAIGVLWAIFTICYAIIGVVSFVTPEWIGDVDGETPGK 60

Query: 58  LGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQ 117
            GLWS C  +  G E+C G+  +FM I+++AF+ +TV   ++V  AL+TI  M+LFFF  
Sbjct: 61  FGLWSVCYAEEAG-EQCKGRLDDFMSIASSAFQAATVFVGLAVVSALLTICAMILFFFCH 119

Query: 118 PTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILA 177
            T+V+ V  W Q++SA+CMIA  V +P GW     + +CG +  +Y LG C I+WAY+LA
Sbjct: 120 STTVFHVCGWTQLVSAICMIAGCVCFPAGWAEDGIRRVCGES-DKYELGNCGIRWAYLLA 178

Query: 178 IIGCLDVIVLAILAFILATRHIKLQPEPLY 207
            IGCLD ++LA LAFILATRH++LQP+P Y
Sbjct: 179 AIGCLDAVILATLAFILATRHVRLQPDPHY 208

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376571|gb|AEE63425.1| unknown [Dendroctonus ponderosae]

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 115/210 (54%), Positives = 149/210 (70%), Gaps = 4/210 (1%)

Query: 1   MGSKVEYVETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIAN---KGR 57
           MGSK+EYV++SQIYATNYVRNSKAVGVLW IFT+C+A+I+ VAF+TPEWIG       G+
Sbjct: 1   MGSKIEYVDSSQIYATNYVRNSKAVGVLWAIFTICYAIIIVVAFITPEWIGNIEGEVPGK 60

Query: 58  LGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQ 117
            GLW+ C  + NG + C G+  E M +SN AF+ +T L  ++V LA++ I  M+LF F  
Sbjct: 61  FGLWTVCYAEENG-DMCKGRLDEIMSMSNRAFQGATALVGLAVLLAILAIGAMILFLFCH 119

Query: 118 PTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILA 177
            T+V+ V AW+Q+IS   ++A   +YP GW     Q +CG +A  +  G+C I+WAYILA
Sbjct: 120 STTVFHVCAWMQLISGAALVAGCALYPYGWSQDIVQTVCGSSAGEFQFGKCGIRWAYILA 179

Query: 178 IIGCLDVIVLAILAFILATRHIKLQPEPLY 207
            IGCLD IVLA LAFILATRH+ LQ EP Y
Sbjct: 180 AIGCLDAIVLATLAFILATRHVTLQAEPSY 209

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294657|ref|XP_315740.4| AGAP005724-PA [Anopheles gambiae str. PEST] gi|157015667|gb|EAA10734.4| AGAP005724-PA [Anopheles gambiae str. PEST]

 Score =  239 bits (611), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 103/210 (49%), Positives = 158/210 (75%), Gaps = 4/210 (1%)

Query: 1   MGSKVEYVETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIANK---GR 57
           MG+K+EYV++S +YATNY+RNSKA+ VLW IF++C+A+I  VAF+TPEW+G A+    GR
Sbjct: 1   MGTKIEYVDSSHMYATNYIRNSKAIAVLWAIFSICYAIISVVAFVTPEWVGDADSDIGGR 60

Query: 58  LGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQ 117
           LGLW  C+ D +  + CTG+  E +E+ + AF+++TV C ++V  +++ I  +LL  FM+
Sbjct: 61  LGLWQVCQKD-DLTDSCTGRLEELLEMQSIAFQVATVFCGLAVATSVLAICCLLLMVFMK 119

Query: 118 PTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILA 177
            T+V+ +  W+Q++SALCM+ + V +P GW S + +++CGP ++R+ +G C ++WAY LA
Sbjct: 120 STTVFHICGWMQMLSALCMVIACVSFPFGWNSDEFRKVCGPESNRFEVGLCSLRWAYPLA 179

Query: 178 IIGCLDVIVLAILAFILATRHIKLQPEPLY 207
           II C+D  +LA L+FILATRH++LQPEP Y
Sbjct: 180 IIACIDGFILATLSFILATRHVRLQPEPQY 209

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209858|gb|EFN86637.1| Lipoma HMGIC fusion partner-like 4 protein [Harpegnathos saltator]

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 113/211 (53%), Positives = 151/211 (71%), Gaps = 5/211 (2%)

Query: 1   MGSKVEYVETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGI---ANKGR 57
           MGSK+EYVE+S +YATNY+RNSKA+GVLWGIFT+C+A+I  VAF+TPEW+G     N GR
Sbjct: 1   MGSKIEYVESSHMYATNYIRNSKAIGVLWGIFTICYAIIGVVAFVTPEWLGDLEHENPGR 60

Query: 58  LGLWSSCEFDVNG--FEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFF 115
            GLW+ C +  NG   EEC G+  +   I+N  F+ ST+L  ++V +AL+ I  ML+FFF
Sbjct: 61  FGLWTRCSYGGNGELGEECIGRLDDLSTIANVPFRASTILVGIAVIIALLAICAMLMFFF 120

Query: 116 MQPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYI 175
            Q T+V+ + AW+Q++S +CM   V +YPLGW+S   + +CG  ASRYN G C ++WA  
Sbjct: 121 CQSTTVFYMCAWMQVVSGICMAVGVFVYPLGWDSPVIRAVCGAAASRYNPGACAVRWAIP 180

Query: 176 LAIIGCLDVIVLAILAFILATRHIKLQPEPL 206
           LA I  LD   LA LAFILA+RH++LQPEP 
Sbjct: 181 LAAIAALDAGTLAALAFILASRHVRLQPEPF 211

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194865022|ref|XP_001971222.1| GG14834 [Drosophila erecta] gi|190653005|gb|EDV50248.1| GG14834 [Drosophila erecta]

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 108/210 (51%), Positives = 152/210 (72%), Gaps = 4/210 (1%)

Query: 1   MGSKVEYVETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIANK---GR 57
           MG+K+EYV+T+ +YA+ Y+RNSKA+GVLW IFT+C+A+I  VAF+TPEWIG  +    GR
Sbjct: 1   MGTKIEYVDTTHLYASKYIRNSKAIGVLWAIFTICYAIIGIVAFVTPEWIGDPDNDGAGR 60

Query: 58  LGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQ 117
           LGLW  C+ D   F+ C  ++    E+   +F+++T   L ++ LAL+TI  ++   FM+
Sbjct: 61  LGLWQQCQRD-EIFDNCRRRWESIFEVPTFSFQLATFFMLGAIALALLTIFFLVCLLFMK 119

Query: 118 PTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILA 177
            T V+ +  W+QIISALCMI +   +P GW S   ++ICGP A+R+ LG C I+WAY LA
Sbjct: 120 STRVFHLCGWMQIISALCMIVACAAFPFGWNSDDFRKICGPEANRFELGLCGIRWAYPLA 179

Query: 178 IIGCLDVIVLAILAFILATRHIKLQPEPLY 207
           IIGC+D +VLA LAFILATRH++LQP+P+Y
Sbjct: 180 IIGCVDGVVLATLAFILATRHVRLQPDPIY 209

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195336766|ref|XP_002035004.1| GM14457 [Drosophila sechellia] gi|195587096|ref|XP_002083301.1| GD13656 [Drosophila simulans] gi|194128097|gb|EDW50140.1| GM14457 [Drosophila sechellia] gi|194195310|gb|EDX08886.1| GD13656 [Drosophila simulans]

 Score =  237 bits (605), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 108/210 (51%), Positives = 152/210 (72%), Gaps = 4/210 (1%)

Query: 1   MGSKVEYVETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIANK---GR 57
           MG+K+EYV+T+ +YA+ Y+RNSKA+GVLW IFT+C+A+I  VAF+TPEWIG  +    GR
Sbjct: 1   MGTKIEYVDTTHLYASKYIRNSKAIGVLWAIFTICYAIIGIVAFVTPEWIGDPDNDGAGR 60

Query: 58  LGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQ 117
           LGLW  C+ D   F+ C  ++    E+   +F+++T   L ++ LAL+TI  ++   FM+
Sbjct: 61  LGLWQQCQRD-EIFDNCRRRWESIFEVPTFSFQLATFFMLGAIALALLTIFFLVCLLFMK 119

Query: 118 PTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILA 177
            T V+ +  WLQIISA+CMI +   +P GW S   ++ICGP A+R+ LG C I+WAY LA
Sbjct: 120 STRVFHLCGWLQIISAICMIVACAAFPFGWNSDDFRKICGPEANRFELGLCGIRWAYPLA 179

Query: 178 IIGCLDVIVLAILAFILATRHIKLQPEPLY 207
           IIGC+D +VLA LAFILATRH++LQP+P+Y
Sbjct: 180 IIGCIDGVVLATLAFILATRHVRLQPDPIY 209

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	238
FB|FBgn0262624	265	Tmhs "Tetraspan membrane prote	0.865	0.777	0.509	9.3e-59
UNIPROTKB|Q86UP9	222	LHFPL3 "Lipoma HMGIC fusion pa	0.823	0.882	0.419	5.7e-43
MGI|MGI:1925076	222	Lhfpl3 "lipoma HMGIC fusion pa	0.823	0.882	0.419	3.2e-42
MGI|MGI:3057108	247	Lhfpl4 "lipoma HMGIC fusion pa	0.831	0.801	0.411	3.2e-42
RGD|727967	247	Lhfpl4 "lipoma HMGIC fusion pa	0.831	0.801	0.411	3.2e-42
UNIPROTKB|Q17R16	247	LHFPL4 "Lipoma HMGIC fusion pa	0.831	0.801	0.411	4e-42
UNIPROTKB|Q7Z7J7	247	LHFPL4 "Lipoma HMGIC fusion pa	0.831	0.801	0.411	4e-42
ZFIN|ZDB-GENE-080220-51	221	lhfpl5b "lipoma HMGIC fusion p	0.840	0.904	0.429	2e-40
ZFIN|ZDB-GENE-040801-180	216	lhfpl3 "lipoma HMGIC fusion pa	0.831	0.916	0.399	8.7e-40
UNIPROTKB|E1C300	221	LHFPL5 "Tetraspan membrane pro	0.840	0.904	0.404	1.1e-39

FB|FBgn0262624 Tmhs "Tetraspan membrane protein in hair cell stereocilia ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 107/210 (50%), Positives = 152/210 (72%)

Query:     1 MGSKVEYVETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIANK---GR 57
             MG+K+EYV+T+ +YA+ Y+RNSKA+GVLW IFT+C+A+I  VAF+TPEWIG  +    GR
Sbjct:     1 MGTKIEYVDTTHLYASKYIRNSKAIGVLWAIFTICYAIIGIVAFVTPEWIGDPDNDGAGR 60

Query:    58 LGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQ 117
             LGLW  C+ D   F+ C  ++    E+   +F+++T   L ++ LAL+TI  ++   FM+
Sbjct:    61 LGLWQQCQRD-EIFDNCRRRWESIFEVPTFSFQLATFFMLGAIALALLTIFFLVCLLFMK 119

Query:   118 PTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILA 177
              T V+ +  W+QIISA+CMI +   +P GW S   ++ICGP A+R+ LG C I+WAY LA
Sbjct:   120 STRVFHLCGWMQIISAICMIVACAAFPFGWNSDDFRKICGPEANRFELGLCGIRWAYPLA 179

Query:   178 IIGCLDVIVLAILAFILATRHIKLQPEPLY 207
             IIGC+D +VLA LAFILATRH++LQP+P+Y
Sbjct:   180 IIGCIDGVVLATLAFILATRHVRLQPDPIY 209

GO:0007605 "sensory perception of sound" evidence=IMP

UNIPROTKB|Q86UP9 LHFPL3 "Lipoma HMGIC fusion partner-like 3 protein" [Homo sapiens (taxid:9606)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 86/205 (41%), Positives = 123/205 (60%)

Query:     9 ETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIG----IANKGRLGLWSSC 64
             E +++Y TNYVRNS+A+GVLW IFT+CFA++  V F+ P WIG        G  GL+  C
Sbjct:     6 EAAKLYHTNYVRNSRAIGVLWAIFTICFAIVNVVCFIQPYWIGDGVDTPQAGYFGLFHYC 65

Query:    65 EFDVNGFEE---CTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSV 121
                 NGF     C G F +F  + + AFK ++    +S+ L +  I    LFFF    +V
Sbjct:    66 IG--NGFSRELTCRGSFTDFSTLPSGAFKAASFFIGLSMMLIIACIICFTLFFFCNTATV 123

Query:   122 YMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGC 181
             Y + AW+Q+ SA C++   +I+P GW+S + + +CG    +Y LG C ++WAYILAIIG 
Sbjct:   124 YKICAWMQLTSAACLVLGCMIFPDGWDSDEVKRMCGEKTDKYTLGACSVRWAYILAIIGI 183

Query:   182 LDVIVLAILAFILATRHIKLQPEPL 206
             LD ++L+ LAF+L  R   L  E L
Sbjct:   184 LDALILSFLAFVLGNRQDSLMAEEL 208

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1925076 Lhfpl3 "lipoma HMGIC fusion partner-like 3" [Mus musculus (taxid:10090)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 86/205 (41%), Positives = 122/205 (59%)

Query:     9 ETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIG----IANKGRLGLWSSC 64
             E +++Y TNYVRNS+A+GVLW IFT+CFA+I  V F+ P WIG        G  GL+  C
Sbjct:     6 EAAKLYHTNYVRNSRAIGVLWAIFTICFAIINVVCFIQPYWIGDGVDTPQAGYFGLFHYC 65

Query:    65 EFDVNGFEE---CTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSV 121
                 NGF     C G F +F  + + AFK ++    +S+ L +  I    LFFF    +V
Sbjct:    66 IG--NGFSRELTCRGSFTDFSTLPSGAFKAASFFIGLSMMLIIACIVCFTLFFFCNTATV 123

Query:   122 YMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGC 181
             Y + AW+Q+  A C++   +I+P GW+S +A+ +CG    +Y LG C ++WAYILAIIG 
Sbjct:   124 YKICAWMQLTFAACLVLGCMIFPDGWDSDEAKRMCGEKTDKYTLGACSVRWAYILAIIGI 183

Query:   182 LDVIVLAILAFILATRHIKLQPEPL 206
             LD ++L+ LA +L  R   L  E L
Sbjct:   184 LDALILSFLAVVLGNRQDSLMAEEL 208

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:3057108 Lhfpl4 "lipoma HMGIC fusion partner-like protein 4" [Mus musculus (taxid:10090)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 84/204 (41%), Positives = 127/204 (62%)

Query:     9 ETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA----NKGRLGLWSSC 64
             E S++Y  +Y+RNS+A+GVLW IFT+CFA+I  V F+ P W+G +      G  GL+  C
Sbjct:     6 EASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFGLFHYC 65

Query:    65 EFD-VNGFE-ECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVY 122
                 + G E  C G F +F  I ++AFK +    L+S+ L L  I    LFFF    +VY
Sbjct:    66 VGSGLAGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFALFFFCNTATVY 125

Query:   123 MVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCL 182
              + AW+Q+++ALC++   +I+P GW++   +++CG    +Y+LG C ++WAYILAIIG L
Sbjct:   126 KICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIGIL 185

Query:   183 DVIVLAILAFILATRHIKLQPEPL 206
             + ++L+ LAF+L  R   L  E L
Sbjct:   186 NALILSFLAFVLGNRQTDLLQEEL 209

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|727967 Lhfpl4 "lipoma HMGIC fusion partner-like 4" [Rattus norvegicus (taxid:10116)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 84/204 (41%), Positives = 127/204 (62%)

Query:     9 ETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA----NKGRLGLWSSC 64
             E S++Y  +Y+RNS+A+GVLW IFT+CFA+I  V F+ P W+G +      G  GL+  C
Sbjct:     6 EASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFGLFHYC 65

Query:    65 EFD-VNGFE-ECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVY 122
                 + G E  C G F +F  I ++AFK +    L+S+ L L  I    LFFF    +VY
Sbjct:    66 VGSGLAGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFALFFFCNTATVY 125

Query:   123 MVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCL 182
              + AW+Q+++ALC++   +I+P GW++   +++CG    +Y+LG C ++WAYILAIIG L
Sbjct:   126 KICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIGIL 185

Query:   183 DVIVLAILAFILATRHIKLQPEPL 206
             + ++L+ LAF+L  R   L  E L
Sbjct:   186 NALILSFLAFVLGNRQTDLLQEEL 209

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q17R16 LHFPL4 "Lipoma HMGIC fusion partner-like 4 protein" [Bos taurus (taxid:9913)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 84/204 (41%), Positives = 126/204 (61%)

Query:     9 ETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA----NKGRLGLWSSC 64
             E S++Y  +Y+RNS+A+GVLW IFT+CFA+I  V F+ P W+G +      G  GL+  C
Sbjct:     6 EASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFGLFHYC 65

Query:    65 EFD-VNGFE-ECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVY 122
                 + G E  C G F +F  I + AFK +    L+S+ L L  I    LFFF    +VY
Sbjct:    66 VGSGLAGRELTCRGSFTDFSTIPSGAFKAAAFFVLLSMVLILGCITCFALFFFCNTATVY 125

Query:   123 MVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCL 182
              + AW+Q+++ALC++   +I+P GW++   +++CG    +Y+LG C ++WAYILAIIG L
Sbjct:   126 KICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIGIL 185

Query:   183 DVIVLAILAFILATRHIKLQPEPL 206
             + ++L+ LAF+L  R   L  E L
Sbjct:   186 NALILSFLAFVLGNRQTDLLQEEL 209

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q7Z7J7 LHFPL4 "Lipoma HMGIC fusion partner-like 4 protein" [Homo sapiens (taxid:9606)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 84/204 (41%), Positives = 127/204 (62%)

Query:     9 ETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA----NKGRLGLWSSC 64
             E S++Y  +Y+RNS+A+GVLW IFT+CFA+I  V F+ P W+G +      G  GL+  C
Sbjct:     6 EASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFGLFHYC 65

Query:    65 EFD-VNGFE-ECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVY 122
                 + G E  C G F +F  I ++AFK +    L+S+ L L  I    LFFF    +VY
Sbjct:    66 VGSGLAGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFSLFFFCNTATVY 125

Query:   123 MVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCL 182
              + AW+Q+++ALC++   +I+P GW++   +++CG    +Y+LG C ++WAYILAIIG L
Sbjct:   126 KICAWMQLLAALCLVLGCMIFPDGWDAETIRDMCGAKTGKYSLGDCSVRWAYILAIIGIL 185

Query:   183 DVIVLAILAFILATRHIKLQPEPL 206
             + ++L+ LAF+L  R   L  E L
Sbjct:   186 NALILSFLAFVLGNRQTDLLQEEL 209

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-080220-51 lhfpl5b "lipoma HMGIC fusion partner-like 5b" [Danio rerio (taxid:7955)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 88/205 (42%), Positives = 122/205 (59%)

Query:     9 ETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA----NKGRLGLWSSC 64
             E ++IY TNYVRNS+A+GV+W +FTL FA+I  V F+ P WIG +      G  GL+  C
Sbjct:    11 EAAKIYHTNYVRNSRAIGVMWAVFTLFFAIITVVVFIQPYWIGDSVNTPQAGYFGLFRYC 70

Query:    65 EFD-VNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYM 123
               + +     C G   +F  I + AF+ +      S+ L + TI  + LFFF    SVY 
Sbjct:    71 IGNPITSELVCKGSVFDFGSIPSGAFRTALFFVGTSMLLIVGTIVCLGLFFFCNAASVYK 130

Query:   124 VAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLD 183
             + AW+Q  SA+ M+   +IYP GW+SA+ + +CG   ++YNLG C I+WAYIL II  LD
Sbjct:   131 ICAWMQTSSAVLMVMGCMIYPDGWDSAEVKRMCGERTTKYNLGNCTIRWAYILGIISILD 190

Query:   184 VIVLAILAFILATRHIKLQPEPLYV 208
               +LA+LAF L  R  KL P+   V
Sbjct:   191 AGLLALLAFTLGNRQDKLLPDDFEV 215

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-040801-180 lhfpl3 "lipoma HMGIC fusion partner-like 3" [Danio rerio (taxid:7955)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 81/203 (39%), Positives = 119/203 (58%)

Query:     9 ETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIG----IANKGRLGLWSSC 64
             E ++IY TNYVRNS+A+GVLW IFT  FA++  V F+ P WIG        G  GL+  C
Sbjct:     6 EAAKIYQTNYVRNSRAIGVLWAIFTTLFAIVNVVCFVQPYWIGDGMDTPQAGYFGLFHYC 65

Query:    65 -EFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYM 123
                 ++    C G F EF  I ++AFK ++    +S+ L L  I    LFFF    +VY 
Sbjct:    66 IGSGMSRDLTCQGSFTEFGSIPSSAFKAASFFIGMSMVLVLSCIGCFALFFFCSTATVYK 125

Query:   124 VAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLD 183
             +  W+Q+ +  C++   +IYP GW++ + + +CG    +Y +G C ++WAYILAI+G LD
Sbjct:   126 ICGWMQLAAGTCLVLGCMIYPDGWDADEVKRMCGEGTDKYTIGACSVRWAYILAIMGILD 185

Query:   184 VIVLAILAFILATRHIKLQPEPL 206
              ++L+ LAF+L  R   L  E L
Sbjct:   186 ALILSFLAFVLGNRQDGLMSEEL 208

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1C300 LHFPL5 "Tetraspan membrane protein of hair cell stereocilia homolog" [Gallus gallus (taxid:9031)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 83/205 (40%), Positives = 124/205 (60%)

Query:     9 ETSQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA----NKGRLGLWSSC 64
             E ++IY TNYVRN++A+GVLW +FTLCF++++ V F+ P WIG +      G  GL+S C
Sbjct:     9 EAARIYHTNYVRNARAMGVLWALFTLCFSILMVVTFIQPYWIGDSIGTPQAGYFGLFSYC 68

Query:    65 EFD-VNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYM 123
               + + G   C G   +F  I ++AFK +     +S  L + +I    LFFF    +VY 
Sbjct:    69 IGNALTGELICKGSPLDFGTIPSSAFKTAMFFVGISTFLIIGSILCFSLFFFCNAATVYK 128

Query:   124 VAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLD 183
             V AW+Q+ +A  ++   +IYP GW+S++ + +CG    +Y LG C ++WAYIL IIG LD
Sbjct:   129 VCAWMQLATATGLMIGCLIYPDGWDSSEVKRMCGDKTDKYTLGACTVRWAYILCIIGILD 188

Query:   184 VIVLAILAFILATRHIKLQPEPLYV 208
              ++L+ LAF+L  R   L P    V
Sbjct:   189 ALILSFLAFVLGNRQDNLLPSDFKV 213

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0060088 "auditory receptor cell stereocilium organization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q86UP9	LHPL3_HUMAN	No assigned EC number	0.4195	0.8235	0.8828	yes	N/A
Q9CTN8	LHPL3_MOUSE	No assigned EC number	0.4195	0.8235	0.8828	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	238
pfam10242	181	pfam10242, L_HGMIC_fpl, Lipoma HMGIC fusion partne	7e-48
pfam13903	170	pfam13903, Claudin_2, PMP-22/EMP/MP20/Claudin tigh	0.004

>gnl|CDD|220647 pfam10242, L_HGMIC_fpl, Lipoma HMGIC fusion partner-like protein

 Score =  155 bits (394), Expect = 7e-48
 Identities = 66/181 (36%), Positives = 103/181 (56%), Gaps = 8/181 (4%)

Query: 25  VGVLWGIFTLCFALIVSVAFLTPEWIG----IANKGRLGLWSSC-EFDVNGFEECTGKFA 79
           VGVLW + T+CFA++  VAF+ P W+G        G  GL+  C          C G   
Sbjct: 1   VGVLWALLTICFAILSVVAFVQPYWLGGSVDSPKAGSFGLYRRCIGLMDQMELTCGGYAL 60

Query: 80  EFMEISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQP---TSVYMVAAWLQIISALCM 136
           +F+ I ++A++ +     +   L L+   + L  F  Q     SV+ +  WLQ+++ LC+
Sbjct: 61  DFLAIPSSAWQAAMFFVGLGTALLLLIACLSLFTFCRQSIISKSVFKICGWLQLVAGLCL 120

Query: 137 IASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLAILAFILAT 196
           +   ++YPLGW+S + + +CGP + +Y+LG C I WAY LAIIG LD ++L  LAF+L+ 
Sbjct: 121 MLGCMLYPLGWDSPEVRRLCGPESGKYSLGLCSIGWAYYLAIIGILDGLLLTFLAFVLSL 180

Query: 197 R 197
           R
Sbjct: 181 R 181

This is a group of proteins expressed from a series of genes referred to as Lipoma HGMIC fusion partner-like. The proteins carry four highly conserved transmembrane domains in this entry. In certain instances, eg in LHFPL5, mutations cause deafness in humans and hypospadias, and LHFPL1 is transcribed in six liver tumour cell lines. Length = 181

>gnl|CDD|222446 pfam13903, Claudin_2, PMP-22/EMP/MP20/Claudin tight junction

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 24/170 (14%), Positives = 62/170 (36%), Gaps = 11/170 (6%)

Query: 34  LCFALIVSVAFLTPEWI--GIANKGRLGLWSS---CEFDVNGFEECTGK-----FAEFME 83
           L   L++ VA  T  W+         LG   +     F   G                + 
Sbjct: 2   LALGLLL-VALATDYWVEADPRRTNSLGSNGAVNTGLFSHLGLWRICFTSEVDVNNFVLT 60

Query: 84  ISNAAFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIY 143
                  +  +   + + L+L+   + L     +  ++ ++   L +++ +  + +VV+Y
Sbjct: 61  SLPDLTIVVLLFLTLGLVLSLLACVLGLCSALKKSGALLLLTGVLLLLAGILGLIAVVLY 120

Query: 144 PLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLAILAFI 193
               +      +    +   + G   + W++ LA++G + V++  +L  +
Sbjct: 121 VQKVQLEIKNVLLTWMSQWQSNGLASLGWSFYLAVVGTVLVLLAGLLLLL 170

Members of this family are claudins, that form tight junctions between cells. Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	238
KOG4026|consensus	207		100.0
PF10242	181	L_HGMIC_fpl: Lipoma HMGIC fusion partner-like prot	100.0
PF13903	172	Claudin_2: PMP-22/EMP/MP20/Claudin tight junction	99.48
KOG4671|consensus	201		99.44
PF00822	166	PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; Int	99.44
PF07062	211	Clc-like: Clc-like; InterPro: IPR010761 Clc protei	99.09
PF06653	163	Claudin_3: Tight junction protein, Claudin-like; I	98.33
PF06687	212	SUR7: SUR7/PalI family; InterPro: IPR009571 This f	95.84
PF07344	155	Amastin: Amastin surface glycoprotein; InterPro: I	90.95
PF15108	184	TMEM37: Voltage-dependent calcium channel gamma-li	89.55
PTZ00201	192	amastin surface glycoprotein; Provisional	88.46

>KOG4026|consensus

Probab=100.00  E-value=7.7e-56  Score=378.60  Aligned_cols=193  Identities=40%  Similarity=0.827  Sum_probs=182.6

Q ss_pred             hhcccchhHHHHHHHHHHHHHHHHHHHhcCCcccccC---CCceeecccccccccccc-cccccccccccccChhhHHHH
Q psy11841         17 NYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIA---NKGRLGLWSSCEFDVNGF-EECTGKFAEFMEISNAAFKIS   92 (238)
Q Consensus        17 ~y~r~s~~vgvlW~~lsl~aail~~vaf~tP~Wl~~~---~~~~fGL~~~C~~~~~~~-~~C~g~~~~f~~ip~~~Wkaa   92 (238)
                      +|+||+|++|++|+++|+|++++..++|+||+|++++   +++|||+|++|.++.... -+|.+++.+++++|+.+||++
T Consensus         1 ~y~rn~~~~gviW~l~t~c~a~l~~v~fi~P~Wig~~~~~~~g~fGl~~~C~~~~~~~~~~~~~~~~~~~~ips~~~~~a   80 (207)
T KOG4026|consen    1 MYYRNSRAVGVIWALCTICFAVLFMVAFIQPYWIGDSVNGKPGSFGLFTYCVGPVLPGSLECRGRLASFSSIPSNEFKLA   80 (207)
T ss_pred             CeeehhhHHHHHHHHHHHHHHHHHHHHhccceeccCCcCCCCccccceeeccCCCCCCcccccCCccccccCCcHHHHHH
Confidence            6999999999999999999999999999999999883   577999999999986432 378899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhhhheEEeeCCCCchhhhhhhCCCCCCCcCCCCCcch
Q psy11841         93 TVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKW  172 (238)
Q Consensus        93 ~~f~~~g~~llll~il~~ll~~~c~~~~v~~i~g~lq~~A~l~~~lglvlfP~Gw~s~~V~~~CG~~a~~y~lG~C~lGW  172 (238)
                      ++|+..|+.++++++.+..+..+|++++++++|||+|.+|++|+++||++||.||||+||||+||.++++|++|+|++||
T Consensus        81 ~f~vlla~~Lill~i~~~~l~~~c~~~si~~~cg~~q~~a~l~milGc~lyP~GW~s~~vr~~CG~~a~ky~lG~CsIgW  160 (207)
T KOG4026|consen   81 AFFVLLAFVLILLLIVFLALLGCCRSKSIFNMCGWMQGIAGLCMILGCALYPDGWDSPEVRRMCGAKAGKYYLGDCSIGW  160 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHHHHhcCCccCCHHHHHHhccccCCccCccccccH
Confidence            99999999999988888888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcchhh
Q psy11841        173 AYILAIIGCLDVIVLAILAFILATRHIKLQPEPLYVA  209 (238)
Q Consensus       173 ay~lAiig~~~~~~~a~L~~~~a~~~~k~~~~~~~~~  209 (238)
                      +|++|++|++++++++.|++++++||++++||+.++|
T Consensus       161 aY~lAIig~~daliL~~lsf~l~~k~~~~~p~~~~~~  197 (207)
T KOG4026|consen  161 AYYLAIIGILDALILAFLSFVLGTKQQRLLPEESKAE  197 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCCcccchhhhc
Confidence            9999999999999999999999999999999998765

>PF10242 L_HGMIC_fpl: Lipoma HMGIC fusion partner-like protein; InterPro: IPR019372 This is a group of proteins expressed from a series of genes referred to as Lipoma HGMIC fusion partner-like

Probab=100.00  E-value=3e-49  Score=336.64  Aligned_cols=173  Identities=35%  Similarity=0.823  Sum_probs=155.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCccccc----CCCceeecccccc-cccccccccccccccccccChhhHHHHHHHHHHH
Q psy11841         25 VGVLWGIFTLCFALIVSVAFLTPEWIGI----ANKGRLGLWSSCE-FDVNGFEECTGKFAEFMEISNAAFKISTVLCLVS   99 (238)
Q Consensus        25 vgvlW~~lsl~aail~~vaf~tP~Wl~~----~~~~~fGL~~~C~-~~~~~~~~C~g~~~~f~~ip~~~Wkaa~~f~~~g   99 (238)
                      +|++|+++|++++++++++|++|+|+++    +.+++||||+||. +....+++|.++.++|.++|+.+||++++|+++|
T Consensus         1 vgvlW~llsl~~ail~~vsfi~P~Wl~~~~~~~~~~sfGlf~rC~~~~~~~~~~C~~~~~~f~~iPs~~Wkaa~~~~~~g   80 (181)
T PF10242_consen    1 VGVLWALLSLCAAILCVVSFISPYWLGGSESTPYSGSFGLFRRCSGQMDEWEQECGGYAESFGDIPSSAWKAAAFFVGIG   80 (181)
T ss_pred             CccHHHHHHHHHHHHHHHHHcCchhccCCcCCCCCceEEeehhhCcCCCCCCCccCCcCCCccccCcHHHHHHHHHHHHH
Confidence            5899999999999999999999999975    3578999999999 3333346998776799999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcc---CchhhHHHHHHHHHHHHHhhhheEEeeCCCCchhhhhhhCCCCCCCcCCCCCcchHHHH
Q psy11841        100 VTLALVTIAVMLLFFFMQ---PTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYIL  176 (238)
Q Consensus       100 ~~llll~il~~ll~~~c~---~~~v~~i~g~lq~~A~l~~~lglvlfP~Gw~s~~V~~~CG~~a~~y~lG~C~lGWay~l  176 (238)
                      ++++.++.+..++++|.+   +|+++++++|+|++|++++++|+++||.||||+||||.||+++++|++|+|++||+|++
T Consensus        81 ~~Ll~~~~~~~L~~~c~~~~~~~sv~~i~g~~Q~~A~l~~~~g~~~yP~Gw~s~~v~~~CG~~s~~y~~g~C~~gwa~~l  160 (181)
T PF10242_consen   81 CVLLLLIALLSLFSCCFRSICSRSVFKICGWLQFVAGLCLLLGCLLYPAGWDSPEVRQLCGPDSDPYKLGDCSLGWAYYL  160 (181)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCceEeeechHHHHHHHHHHHHhheeecCccCCcHHHhhhcCCCCceeCCCCCCChHHHH
Confidence            999776665555555432   59999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q psy11841        177 AIIGCLDVIVLAILAFILATR  197 (238)
Q Consensus       177 Aiig~~~~~~~a~L~~~~a~~  197 (238)
                      |++|++++++++.+++++++|
T Consensus       161 a~~~~~~~~~l~~~~~~l~~~  181 (181)
T PF10242_consen  161 AIIGVADALLLSFLAFVLSNR  181 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999876

The proteins carry four highly conserved transmembrane domains. In certain instances, as in LHFPL5, mutations cause deafness in humans [] or hypospadias []. LHFPL1 is transcribed in six liver tumour cell lines [].

>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction

Probab=99.48  E-value=1.4e-13  Score=112.78  Aligned_cols=151  Identities=16%  Similarity=0.297  Sum_probs=109.1

Q ss_pred             HHHHHHHHHhcCCccccc----CC--------------CceeecccccccccccccccccccccccccChhhHHHHHHHH
Q psy11841         35 CFALIVSVAFLTPEWIGI----AN--------------KGRLGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLC   96 (238)
Q Consensus        35 ~aail~~vaf~tP~Wl~~----~~--------------~~~fGL~~~C~~~~~~~~~C~g~~~~f~~ip~~~Wkaa~~f~   96 (238)
                      ++.++.++|+.||+|+..    ++              ..+.|+|++|.+.+... +-. .    .+.-+...+.++.+.
T Consensus         2 la~~L~~ia~~T~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~Glw~~c~~~~~~~-~~~-~----~~~~~~~~~~~~~~~   75 (172)
T PF13903_consen    2 LALILLIIAFGTPYWVVSDPRRTGFNCTESNNSVNFGLFSHSGLWRICFQREYDS-SNR-N----ETTNPHWMRATIAFL   75 (172)
T ss_pred             hHHHHHHHHHcCchHhEEeeeccCccccccccccccccccccCcceEeecCCcCc-ccc-h----hhhhHHHHHHHHHHH
Confidence            567788999999999965    11              12579999998764220 110 0    233344577888889


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhhhheEEeeCCCCchhhhhhhC-CCCCCCcCCCCCcchHHH
Q psy11841         97 LVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICG-PTASRYNLGQCDIKWAYI  175 (238)
Q Consensus        97 ~~g~~llll~il~~ll~~~c~~~~v~~i~g~lq~~A~l~~~lglvlfP~Gw~s~~V~~~CG-~~a~~y~lG~C~lGWay~  175 (238)
                      .+|+++.+++.++.+..+++++++.++..+.+.++|+++.++++++|+...+.+ .++.-- ...++.+..+.++||||+
T Consensus        76 ~l~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ag~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gwSf~  154 (172)
T PF13903_consen   76 ILGLLLLLFAFVFALIGFCKRSYTLYLFAGILFILAGLCILIALIVFVVSVNYE-IEINFPQWPPDPPSPFSYSYGWSFW  154 (172)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhcccccCccCeeEEECHHHH
Confidence            999999988888887777777788889999999999999999999998877643 211110 011223333579999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy11841        176 LAIIGCLDVIVLAILAF  192 (238)
Q Consensus       176 lAiig~~~~~~~a~L~~  192 (238)
                      ++++|+++.+++++|..
T Consensus       155 la~~a~~~~l~a~~l~l  171 (172)
T PF13903_consen  155 LAWVAFILLLLAGILFL  171 (172)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998854

>KOG4671|consensus

Probab=99.44  E-value=7.5e-13  Score=112.45  Aligned_cols=162  Identities=19%  Similarity=0.303  Sum_probs=113.3

Q ss_pred             hhcccchhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCceeeccccccccccc------ccccccccccccccChhhHH
Q psy11841         17 NYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIANKGRLGLWSSCEFDVNG------FEECTGKFAEFMEISNAAFK   90 (238)
Q Consensus        17 ~y~r~s~~vgvlW~~lsl~aail~~vaf~tP~Wl~~~~~~~fGL~~~C~~~~~~------~~~C~g~~~~f~~ip~~~Wk   90 (238)
                      ..+|+.|.+..+..+.+++.+   ++|+.+|.|+.+++ .+-|||.+|.++...      +.+|.      +....+..+
T Consensus        12 r~~~plk~i~licl~~aial~---IvAl~s~~Wl~as~-~~q~Lw~~C~~~~~~~~~pfd~~~C~------s~~~~~~~~   81 (201)
T KOG4671|consen   12 RWILPLKLILLICLLSAIALD---IVALASRGWLQASD-QRQGLWWSCRKPASTHAAPFDPGGCQ------STLEVDGGR   81 (201)
T ss_pred             EEEEechHHHHHHHHHHHHHH---HHHhccchhhhcCC-CCcceeeeecCcCCcCCCCcCCccCc------ChhhcchHH
Confidence            357788888765555555544   89999999998754 445799999987431      23786      334455567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccC-chhhHHHHHHHHHHHHHhhhheEEeeCCCCchhhhhhhCCCCCCCcCCCCC
Q psy11841         91 ISTVLCLVSVTLALVTIAVMLLFFFMQP-TSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCD  169 (238)
Q Consensus        91 aa~~f~~~g~~llll~il~~ll~~~c~~-~~v~~i~g~lq~~A~l~~~lglvlfP~Gw~s~~V~~~CG~~a~~y~lG~C~  169 (238)
                      +++.++..|.+++.++..+.+...|.+. .+.+|+++.+.+.++++.++++++||..+..+.-...  ..+-.|.   -.
T Consensus        82 aaAAmL~~g~~i~~I~filgl~~~cv~~~~~fyRvi~~~l~laaV~qi~sLvIyPVk~~~~~tl~~--~pa~~~~---~~  156 (201)
T KOG4671|consen   82 AAAAMLFIGAAILVICFILGLFALCVPLKLVFYRVIGGLLFLAAVLQIISLVIYPVKYTETFTLHA--NPAVTYV---SI  156 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeeeHHHHHHHHHHHHHhheeEEeeeeeeeeeeeec--ccceeee---cc
Confidence            7777777777777666555555555554 6778999999999999999999999999974432111  0111111   11


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHH
Q psy11841        170 IKWAYILAIIGCLDVIVLAILAFI  193 (238)
Q Consensus       170 lGWay~lAiig~~~~~~~a~L~~~  193 (238)
                      -.|+|++++..++.++.+++|...
T Consensus       157 ~~WayG~~WgAtifl~G~a~l~~c  180 (201)
T KOG4671|consen  157 DNWAYGFGWGATIFLIGAAFLLCC  180 (201)
T ss_pred             cccccchhHHHHHHHhhhhHhhee
Confidence            229999999999999999988554

>PF00822 PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; InterPro: IPR004031 Several vertebrate small integral membrane glycoproteins are evolutionary related [, , ], including eye lens specific membrane protein 20 (MP20 or MP19); epithelial membrane protein-1 (EMP-1), which is also known as tumor-associated membrane protein (TMP) or as squamous cell-specific protein Cl-20; epithelial membrane protein-2 (EMP-2), which is also known as XMP; epithelial membrane protein-3 (EMP-3), also known as YMP; and peripheral myelin protein 22 (PMP-22), which is expressed in many tissues but mainly by Schwann cells as a component of myelin of the peripheral nervous system (PNS)

Probab=99.44  E-value=8.1e-13  Score=108.73  Aligned_cols=148  Identities=20%  Similarity=0.376  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHhcCCcccccCCC---ceeeccccccccc-ccccccccccccccccChhhHHHHHHHHHHHHHHHHHHHHH
Q psy11841         34 LCFALIVSVAFLTPEWIGIANK---GRLGLWSSCEFDV-NGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAV  109 (238)
Q Consensus        34 l~aail~~vaf~tP~Wl~~~~~---~~fGL~~~C~~~~-~~~~~C~g~~~~f~~ip~~~Wkaa~~f~~~g~~llll~il~  109 (238)
                      +...++.+++..+|+|..++..   .+.|||++|.... .+..+|. .++++.+.|+ ..|++..++.+++++..++.++
T Consensus        13 ~~~~~~liva~~~~~W~~~~~~~~~~~~GLW~~C~~~~~~~~~~c~-~~~~~~~~~~-~~~a~r~l~i~s~il~~l~~~l   90 (166)
T PF00822_consen   13 LGWLALLIVATATPYWRVSNVSGQSRWSGLWRECIQQSCTGSTQCD-SYDSFLSLPG-YLQAARALMILSIILGFLGLIL   90 (166)
T ss_pred             HHHHHHHHHHcCchHheEecCcCccceeCCccccCCcCcCceeccc-ccCcccchhH-HHHHHHHHhHHHHHHHHHHHHH
Confidence            3344467889999999977544   4899999999875 3334895 5677776555 5999999999999988888777


Q ss_pred             HHHHHhc-cCchhhHHHHHHHHHHHHHhhhheEEeeCCCCchhhhhhhCCCCCCCcCCCCCcchHHHHHHHHHHHHHHHH
Q psy11841        110 MLLFFFM-QPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLA  188 (238)
Q Consensus       110 ~ll~~~c-~~~~v~~i~g~lq~~A~l~~~lglvlfP~Gw~s~~V~~~CG~~a~~y~lG~C~lGWay~lAiig~~~~~~~a  188 (238)
                      ......| +.+.-.+..|.+.++|+++..+++..|+..-.++.-+       ..+...+=+.||||++++++.+++++++
T Consensus        91 ~~~g~~~~~~~~~~~~ag~l~~~agl~~l~~~~~y~~~~~~~~~~-------~~~~~~~~~~G~s~~lgW~~~~l~~~~G  163 (166)
T PF00822_consen   91 ALFGLCCTKRGPRPKVAGILFILAGLCLLIAVSWYTAVIVQEFSD-------PSRPNIKYEFGWSFYLGWVAFILLLLSG  163 (166)
T ss_pred             HHhcccccccCCCCCcceeeeHHHhhhhheeEEEEeccCchhhcc-------ccCCCCcEEehHHHHHHHHHHHHHHHHH
Confidence            6666555 3344455699999999999999999997765433221       1111345689999999999999999998


Q ss_pred             HH
Q psy11841        189 IL  190 (238)
Q Consensus       189 ~L  190 (238)
                      ++
T Consensus       164 ~l  165 (166)
T PF00822_consen  164 IL  165 (166)
T ss_pred             Hh
Confidence            76

PMP-22 probably plays a role both in myelinization and in cell proliferation. Mutations affecting PMP-22 are associated with hereditary motor and sensory neuropathies such as Charcot-Marie-Tooth disease type 1A (CMT-1A) in human or the trembler phenotype in mice. The proteins of this family are about 160 to 173 amino acid residues in size, and contain four transmembrane segments. PMP-22, EMP-1, -2 and -3 are highly similar, while MP20 is more distantly related. This family also includes the claudins, which are components of tight junctions.; GO: 0016020 membrane

>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]

Probab=99.09  E-value=5.3e-10  Score=97.88  Aligned_cols=160  Identities=17%  Similarity=0.249  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCCcc-ccc----CCCceeecccccccccc----------ccccccccccccc----------
Q psy11841         28 LWGIFTLCFALIVSVAFLTPEW-IGI----ANKGRLGLWSSCEFDVN----------GFEECTGKFAEFM----------   82 (238)
Q Consensus        28 lW~~lsl~aail~~vaf~tP~W-l~~----~~~~~fGL~~~C~~~~~----------~~~~C~g~~~~f~----------   82 (238)
                      .=.++++++.++..+++.||.| +.+    ....+-|||+.|.+++.          ++..|..++|.-.          
T Consensus         6 ~s~vl~lig~~L~~~al~SPsWQvv~~~e~~~~h~hGLW~dC~~~~~~~~~~~~~~~~~~~C~ykFd~~~~~~y~~~~~~   85 (211)
T PF07062_consen    6 FSFVLILIGLILTFIALFSPSWQVVNIREFRAYHQHGLWLDCQRPESHLLARDDDDEGPLHCTYKFDYDDEQNYDEKVDN   85 (211)
T ss_pred             HHHHHHHHHHHHHHHHHcCCceEEEEecccCcEEecceeeecCCccccccchhcccCCCceEEEEcCccHHHHHHHHHhh
Confidence            3457899999999999999999 444    23456899999997654          2237876644211          


Q ss_pred             ---cc-------C-hhhHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhhhheEEeeCCCCch
Q psy11841         83 ---EI-------S-NAAFKISTVL-CLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMIASVVIYPLGWESA  150 (238)
Q Consensus        83 ---~i-------p-~~~Wkaa~~f-~~~g~~llll~il~~ll~~~c~~~~v~~i~g~lq~~A~l~~~lglvlfP~Gw~s~  150 (238)
                         +-       | -..|+.+++. +..++++.++++++.....|.++..  ......-++|++|..+|.++|=.--+..
T Consensus        86 ~~~~~~~~~~~~h~F~gWh~AvLil~~~s~lf~~lsi~~~iCa~c~~~~a--i~~~v~~~ia~l~S~~g~~iF~~~a~~~  163 (211)
T PF07062_consen   86 CDGNSNVGESETHCFFGWHKAVLILISFSMLFALLSICFGICAPCHPSFA--IFYTVLVFIAALLSLIGLGIFFFNAHMV  163 (211)
T ss_pred             cccCCcccccccceehhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence               00       0 1237776665 7777777777665544444444333  3444555789999999999994433333


Q ss_pred             hhhhhhCCCCCCCcCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy11841        151 KAQEICGPTASRYNLGQCDIKWAYILAIIGCLDVIVLAILAFI  193 (238)
Q Consensus       151 ~V~~~CG~~a~~y~lG~C~lGWay~lAiig~~~~~~~a~L~~~  193 (238)
                      |-|-. -+..+.|+   =++||||++++.|++..+.+-+.+..
T Consensus       164 d~r~~-~g~~~tYe---q~~G~afYl~~~g~l~~~~a~l~sv~  202 (211)
T PF07062_consen  164 DNRFV-QGIVGTYE---QHYGYAFYLHLAGSLLLLFAFLFSVF  202 (211)
T ss_pred             hhhee-ecccceEE---EeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            33322 23445554   35999999999999877665555543

This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane

>PF06653 Claudin_3: Tight junction protein, Claudin-like; InterPro: IPR009545 This family consists of several Caenorhabditis elegans specific proteins of unknown function

Probab=98.33  E-value=2.3e-05  Score=65.88  Aligned_cols=141  Identities=13%  Similarity=0.200  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHhcCCcccccCCCceeecccccccccccccccccccccccccChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11841         33 TLCFALIVSVAFLTPEWIGIANKGRLGLWSSCEFDVNGFEECTGKFAEFMEISNAAFKISTVLCLVSVTLALVTIAVMLL  112 (238)
Q Consensus        33 sl~aail~~vaf~tP~Wl~~~~~~~fGL~~~C~~~~~~~~~C~g~~~~f~~ip~~~Wkaa~~f~~~g~~llll~il~~ll  112 (238)
                      -+.+.++..++..||.|+.++..          +.    +.|.|- .++++-.+++..++..++-+.+.+.++.++....
T Consensus        12 i~i~~iL~~vgvFTp~W~~~~~~----------~~----~~~~GI-vP~~~~~~~W~~~as~lm~is~~~~~i~i~~~~~   76 (163)
T PF06653_consen   12 ILIGFILNAVGVFTPCWITDSNY----------KI----SISIGI-VPYSSSEPGWFAAASWLMYISFACFIIMIIFYII   76 (163)
T ss_pred             HHHHHHHHHHheECCceEEEeCC----------cc----cceeeE-EeCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677899999999999975432          11    244432 1122212223445555666665555444333332


Q ss_pred             HH--------hccCchhhHHHHHHHHHHHHHhhhheEEeeCCCCchhhhhhhCCCCCCCcCCCCCcchHHHHHHHHHHHH
Q psy11841        113 FF--------FMQPTSVYMVAAWLQIISALCMIASVVIYPLGWESAKAQEICGPTASRYNLGQCDIKWAYILAIIGCLDV  184 (238)
Q Consensus       113 ~~--------~c~~~~v~~i~g~lq~~A~l~~~lglvlfP~Gw~s~~V~~~CG~~a~~y~lG~C~lGWay~lAiig~~~~  184 (238)
                      ..        +++.|+.++...++-++..++..++.++|-.+.++..         +.|+.+.=++|||+.+++++.++.
T Consensus        77 ~~~~v~~~g~~~~~r~~~~~i~~~s~li~il~~iavil~a~~~~~~~---------~~~~~~~~~lGyS~wL~v~sail~  147 (163)
T PF06653_consen   77 IVYKVRKHGYSCSIRKWFHIISIFSLLIVILTIIAVILFAVNISSFN---------NGYDPFSLSLGYSAWLCVASAILS  147 (163)
T ss_pred             HheeEecccccHHHHHHHHHHHHHHHHHHHHHHHHheeEEeeccccc---------cccccccceeehHHHHHHHHHHHH
Confidence            22        1223889999999999999999999999977666331         223333347999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q psy11841        185 IVLAILAFILATR  197 (238)
Q Consensus       185 ~~~a~L~~~~a~~  197 (238)
                      ++...++.-.++|
T Consensus       148 ~~~~~ls~~~a~~  160 (163)
T PF06653_consen  148 LINFGLSGYIARK  160 (163)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999888777655

>PF06687 SUR7: SUR7/PalI family; InterPro: IPR009571 This family consists of several fungal-specific SUR7 proteins

Probab=95.84  E-value=0.12  Score=44.04  Aligned_cols=119  Identities=16%  Similarity=0.336  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHhcCCc----cccc------C-----------CCceeecccccccc-cccccccccc----ccccc-
Q psy11841         30 GIFTLCFALIVSVAFLTPE----WIGI------A-----------NKGRLGLWSSCEFD-VNGFEECTGK----FAEFM-   82 (238)
Q Consensus        30 ~~lsl~aail~~vaf~tP~----Wl~~------~-----------~~~~fGL~~~C~~~-~~~~~~C~g~----~~~f~-   82 (238)
                      .++++.+.++.+++.+.+.    .+.+      +           +.+++|+|.+|..+ ..+.++|...    ..+.. 
T Consensus         6 ~~~~~~a~il~il~~i~~~~~~~~~~~l~~~~~~~s~~~~~~g~~~~y~~gl~g~C~~~~~~~~~~Cs~~~~~y~f~~~~   85 (212)
T PF06687_consen    6 LLLSLAAFILLILALISGPSNSSVLKSLYFLKLDTSGLGISLGLPDFYRFGLWGYCEGNNGTNITSCSSPSPGYPFDPRE   85 (212)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCcccceEEEEEECCCCCccCCCCCeEEEEEEEEeeeCCCCCCCccCCCCCCCCCCHHH
Confidence            4677777777777776665    6654      1           12789999999983 3333488742    11111 


Q ss_pred             ------------ccCh----------hhHHHHHHHHHHHHHHHHHHHHHHHH-HHhccCc--hhhHHHHHHHHHHHHHhh
Q psy11841         83 ------------EISN----------AAFKISTVLCLVSVTLALVTIAVMLL-FFFMQPT--SVYMVAAWLQIISALCMI  137 (238)
Q Consensus        83 ------------~ip~----------~~Wkaa~~f~~~g~~llll~il~~ll-~~~c~~~--~v~~i~g~lq~~A~l~~~  137 (238)
                                  .+|+          ...++..++..+++.+..++.+...+ .++.++|  ........+.+++.++..
T Consensus        86 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ia~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a~~~~l  165 (212)
T PF06687_consen   86 ILDSELNSLSDLGLPSSLRSALDYYNNLLKAMFILYPIAIVFTFLALILSGLLAFFSRPRNTILSLVASILSLLAFIFLL  165 (212)
T ss_pred             HhcccchhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH
Confidence                        1232          14677778888888888777666344 3333433  455666667777777777


Q ss_pred             hheEEeeCCCC
Q psy11841        138 ASVVIYPLGWE  148 (238)
Q Consensus       138 lglvlfP~Gw~  148 (238)
                      ++.++.-.-+.
T Consensus       166 va~~i~t~~~~  176 (212)
T PF06687_consen  166 VAAIIATALFV  176 (212)
T ss_pred             HHHHHHHHHHH
Confidence            77766644443

Its activity regulates expression of RVS161, a homologue of human endophilin, suggesting a function for both in endocytosis [, ]. The protein carries four transmembrane domains and is thus likely to act as an anchoring protein for the eisosome to the plasma membrane. Eisosomes are the immobile protein complexes, that include the proteins Pil1 and Lsp1, which co-localise with sites of protein and lipid endocytosis at the plasma membrane. SUR7 protein may play a role in sporulation []. Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This family also includes PalI which is part of a pH signal transduction cascade. Based on the similarity of PalI to the yeast Rim9 meiotic signal transduction component it has been suggested that PalI might be a membrane sensor for ambient pH [].

>PF07344 Amastin: Amastin surface glycoprotein; InterPro: IPR009944 This family contains the eukaryotic surface glycoprotein amastin (approximately 180 residues long)

Probab=90.95  E-value=2  Score=35.61  Aligned_cols=87  Identities=15%  Similarity=0.256  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHhh----hheEEeeCCCCchhhhhhhCCCCCCC
Q psy11841         88 AFKISTVLCLVSVTLALVTIAVMLLFFFMQPTSVYMVAAWLQIISALCMI----ASVVIYPLGWESAKAQEICGPTASRY  163 (238)
Q Consensus        88 ~Wkaa~~f~~~g~~llll~il~~ll~~~c~~~~v~~i~g~lq~~A~l~~~----lglvlfP~Gw~s~~V~~~CG~~a~~y  163 (238)
                      -+|+++.|-.+++.+...+.++..+.++|. +....++-.+-+++.++.+    +....|    +    ++.|+.    .
T Consensus        61 ~f~aa~afaIisi~~~~~a~v~g~~~l~~~-~~~r~v~l~L~~~~~~~~~v~wa~~v~~Y----~----~~~C~~----~  127 (155)
T PF07344_consen   61 RFRAAQAFAIISIFVYGAAFVLGVLLLCCC-SCLRWVCLVLNIVGIVTLLVVWALMVVVY----Y----GGFCGA----L  127 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH----c----cCCCcC----c
Confidence            599999998888888877766666555442 1222233333333333222    223334    1    567852    3


Q ss_pred             cCCCCCcchHHHHHHHHHHHHHHH
Q psy11841        164 NLGQCDIKWAYILAIIGCLDVIVL  187 (238)
Q Consensus       164 ~lG~C~lGWay~lAiig~~~~~~~  187 (238)
                      +....+.|=+|+|.+++-.+.++.
T Consensus       128 ~~~~~~yg~GF~L~v~aw~l~~i~  151 (155)
T PF07344_consen  128 KSRGYKYGAGFALFVAAWCLDIIN  151 (155)
T ss_pred             cCCCcccCccHHHHHHHHHHHHHH
Confidence            344557888888888765555443

In Trypanosoma cruzi, amastin is particularly abundant during the amastigote stage.

>PF15108 TMEM37: Voltage-dependent calcium channel gamma-like subunit protein family

Probab=89.55  E-value=2.1  Score=36.45  Aligned_cols=125  Identities=11%  Similarity=0.278  Sum_probs=66.2

Q ss_pred             cchhhhhhcccchhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCceeecccccccccccccccccccccccccChhhHH
Q psy11841         11 SQIYATNYVRNSKAVGVLWGIFTLCFALIVSVAFLTPEWIGIANKGRLGLWSSCEFDVNGFEECTGKFAEFMEISNAAFK   90 (238)
Q Consensus        11 ~~~y~~~y~r~s~~vgvlW~~lsl~aail~~vaf~tP~Wl~~~~~~~fGL~~~C~~~~~~~~~C~g~~~~f~~ip~~~Wk   90 (238)
                      .+.+-+.++|...      .+++..+-+++.++..--+|+-.+ +.-||||..|..++....+|.... +....|-.+..
T Consensus        12 ~~~FfEsfiRtLI------ilC~alavVLSSisiCDG~WLla~-~~lFGLWhFCt~~n~s~~~C~rdL-~~a~v~gL~~g   83 (184)
T PF15108_consen   12 HRSFFESFIRTLI------ILCTALAVVLSSISICDGHWLLAE-DRLFGLWHFCTVSNQSSPHCLRDL-SQAHVPGLAVG   83 (184)
T ss_pred             CchHHHHHHHHHH------HHHHHHHHHHhhheeecceEEEec-CeeeeeeeeeecCCCCcchhhHHH-HHhcCchHHHH
Confidence            3455556677332      367778888889999999999654 467999999986644334895211 11223432222


Q ss_pred             HHHH--HHHHHHHHHHHHHHHHHHHHhc---cCchhhHHHHHHHHHHHHHhhhheEEe
Q psy11841         91 ISTV--LCLVSVTLALVTIAVMLLFFFM---QPTSVYMVAAWLQIISALCMIASVVIY  143 (238)
Q Consensus        91 aa~~--f~~~g~~llll~il~~ll~~~c---~~~~v~~i~g~lq~~A~l~~~lglvlf  143 (238)
                      ....  ...++++..+...=+....=.|   ++|+=-..-.++.+++.++-.-|++.|
T Consensus        84 m~l~Rs~~slAVV~AIFGLElLmvSQvcEd~~SrrKWamGs~LlLvsfvlSs~GllsF  141 (184)
T PF15108_consen   84 MGLARSVGSLAVVVAIFGLELLMVSQVCEDAHSRRKWAMGSVLLLVSFVLSSGGLLSF  141 (184)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhhhhhhhhhHHHHHHHHHhcccHHHH
Confidence            2111  1222222222111111111123   223333455666667777766677666

>PTZ00201 amastin surface glycoprotein; Provisional

Probab=88.46  E-value=6.4  Score=34.27  Aligned_cols=94  Identities=13%  Similarity=0.226  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCchhhHHHHHHHHHHHH--HhhhheEEeeCCCCchhhhhhhCCCCCCCc
Q psy11841         88 AFKISTVLCLVSVTLALVTIAVMLLFF-FMQPTSVYMVAAWLQIISAL--CMIASVVIYPLGWESAKAQEICGPTASRYN  164 (238)
Q Consensus        88 ~Wkaa~~f~~~g~~llll~il~~ll~~-~c~~~~v~~i~g~lq~~A~l--~~~lglvlfP~Gw~s~~V~~~CG~~a~~y~  164 (238)
                      -+|+++.|-.+++.+...+.++..+.. ||+..+  -+|-.+-+++..  +.+-+++..-  +..++- +.|.+..+   
T Consensus        73 ~Fr~aqAfaIISI~v~~aA~vlg~~~l~cc~~lr--~vcl~Lnivg~vt~~VvWa~mv~~--Y~~~~~-~~C~~~~~---  144 (192)
T PTZ00201         73 QFRVAQALAVISILVYGAAFVLGLVLLYGCTIHR--WVCLALNIVGAVTLGVVWAAMVVT--YYKDDG-PLCPRVRD---  144 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHHHheeeeeEEEE--EEcCCC-cccccccc---
Confidence            489999997777776666654444433 343322  234444444444  4444565553  322211 15643322   


Q ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHH
Q psy11841        165 LGQCDIKWAYILAIIGCLDVIVLAIL  190 (238)
Q Consensus       165 lG~C~lGWay~lAiig~~~~~~~a~L  190 (238)
                       -+-+.|=+|+|.+.+-.+-++.-++
T Consensus       145 -~~~~yGaGF~Llv~AW~L~iinii~  169 (192)
T PTZ00201        145 -MGYRFGTGFALLVVAWILDILNIIF  169 (192)
T ss_pred             -CCCCccCcHHHHHHHHHHHHHHHHH
Confidence             0235777788877765555444333

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00