Psyllid ID: psy11853

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-
Protein Sequence
MMITHILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII
Secondary Structure (PSIPRED)
ccccccccEEEEEEEEEcHHHHHHHHcccccEEEccccHHHHHHHcccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHccHHHHHHHHcccccccEEHHHHHHHHHHcccccccEEEEEEEEc
Coil and Loop (DISEMBL)
MMITHILSIFRSMSFFMAANVRKAVAEgrgdaipiflseipllfkrgiikpnvaIVQVSII
Flexible Loop (DISEMBL)
MMITHILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIpllfkrgiikpnvaiVQVSII
Low Complexity Region (SEG)
MMITHILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII
Disordered region (IsUnstruct)
**ITHILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS**
Disordered Region (DISOPRED)
****HILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII
Disordered Region (DISEMBL)
MMITHILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII
Disordered Region (DISPRO)
MMITHILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMITHILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	61	2.2.26 [Sep-21-2011]
P38942	429	4-hydroxybutyrate coenzym	yes	N/A	0.819	0.116	0.42	0.0002

>sp|P38942|CAT2_CLOK5 4-hydroxybutyrate coenzyme A transferase OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=cat2 PE=3 SV=3

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 28/50 (56%)

Query: 10  FRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
           FR  + F+    R AV  GR D  P F  E+P LFK   +  +VA++QVS
Sbjct: 75  FRHNALFVGGCTRDAVNSGRADYTPCFFYEVPSLFKEKRLPVDVALIQVS 124


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.334    0.145    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,581,322
Number of Sequences: 539616
Number of extensions: 454596
Number of successful extensions: 1727
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1726
Number of HSP's gapped (non-prelim): 1
length of query: 61
length of database: 191,569,459
effective HSP length: 34
effective length of query: 27
effective length of database: 173,222,515
effective search space: 4677007905
effective search space used: 4677007905
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)

Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) (taxid: 431943)
EC: 2EC: .EC: 8EC: .EC: 3EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
332376523	474	unknown [Dendroctonus ponderosae]	0.852	0.109	0.788	1e-16
312374437	466	hypothetical protein AND_15922 [Anophele	0.852	0.111	0.730	2e-14
270013777	584	hypothetical protein TcasGA2_TC012421 [T	0.836	0.087	0.705	4e-14
195451691	476	GK13373 [Drosophila willistoni] gi|19416	0.852	0.109	0.711	5e-14
170035393	472	4-Hydroxybutyrate CoA-transferase [Culex	0.852	0.110	0.730	5e-14
389613607	465	4-hydroxybutyrate CoA-transferase, parti	0.852	0.111	0.711	8e-14
242018907	414	4-hydroxybutyrate coenzyme A transferase	0.852	0.125	0.692	1e-13
225581176	476	GA20688 [Drosophila miranda]	0.852	0.109	0.711	1e-13
125772699	476	GA20688 [Drosophila pseudoobscura pseudo	0.852	0.109	0.711	1e-13
91090242	472	PREDICTED: similar to AGAP004396-PA [Tri	0.852	0.110	0.692	1e-13

>gi|332376523|gb|AEE63401.1| unknown [Dendroctonus ponderosae]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/52 (78%), Positives = 47/52 (90%)

Query: 8   SIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
            IFRS SFFM  NVRKAVA+GRGDAIPIFLSEIPLLF +GIIKP++A++QVS
Sbjct: 110 GIFRSNSFFMGGNVRKAVADGRGDAIPIFLSEIPLLFYKGIIKPDIAVIQVS 161

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312374437|gb|EFR21993.1| hypothetical protein AND_15922 [Anopheles darlingi]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/52 (73%), Positives = 44/52 (84%)

Query: 8   SIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
            IFRS S FM  NVRKAVA+GRGDA+PIFL EIPLLF+R +I+P+VAIV VS
Sbjct: 101 DIFRSKSLFMGGNVRKAVADGRGDAVPIFLHEIPLLFRRKLIQPDVAIVSVS 152

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013777|gb|EFA10225.1| hypothetical protein TcasGA2_TC012421 [Tribolium castaneum]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/51 (70%), Positives = 42/51 (82%)

Query: 9   IFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
           IFRS SFFM  NVRKAVAEGRGD +PIFLSEIPLLF + I +P +A++ VS
Sbjct: 221 IFRSFSFFMGGNVRKAVAEGRGDCLPIFLSEIPLLFYKKIFQPEIALIHVS 271

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195451691|ref|XP_002073035.1| GK13373 [Drosophila willistoni] gi|194169120|gb|EDW84021.1| GK13373 [Drosophila willistoni]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 43/52 (82%)

Query: 8   SIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
            IFRS SFFM ANVRKAVAEGRGD +PIFL EIP LF + I+KPNV+++ VS
Sbjct: 111 DIFRSNSFFMGANVRKAVAEGRGDNVPIFLHEIPQLFYKKIVKPNVSLIHVS 162

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170035393|ref|XP_001845554.1| 4-Hydroxybutyrate CoA-transferase [Culex quinquefasciatus] gi|167877370|gb|EDS40753.1| 4-Hydroxybutyrate CoA-transferase [Culex quinquefasciatus]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/52 (73%), Positives = 44/52 (84%)

Query: 8   SIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
            IFRS S FM  NVR+AVAEGRGDAIPIFL EIP+LF+R +I+P+VAIV VS
Sbjct: 107 DIFRSKSTFMGGNVRQAVAEGRGDAIPIFLHEIPILFRRKLIQPDVAIVSVS 158

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389613607|dbj|BAM20135.1| 4-hydroxybutyrate CoA-transferase, partial [Papilio xuthus]

 Score = 80.9 bits (198), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 8   SIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
            IFRS+S FMAANVRK+VAEGR DAIPIFL +IP LF R II+P++A++QVS
Sbjct: 114 DIFRSVSLFMAANVRKSVAEGRSDAIPIFLQDIPKLFHRKIIQPDIALIQVS 165

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018907|ref|XP_002429910.1| 4-hydroxybutyrate coenzyme A transferase, putative [Pediculus humanus corporis] gi|212514956|gb|EEB17172.1| 4-hydroxybutyrate coenzyme A transferase, putative [Pediculus humanus corporis]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 41/52 (78%)

Query: 8   SIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
            +FRS SFFM ANVRK VAEG  D IPIFLSEIP LF RGI KP++A++ VS
Sbjct: 51  DVFRSCSFFMGANVRKGVAEGTSDCIPIFLSEIPKLFHRGIYKPDIALIHVS 102

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225581176|gb|ACN94744.1| GA20688 [Drosophila miranda]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 43/52 (82%)

Query: 8   SIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
            IFRS S FM ANVRKAVAEGRGD +PIFL EIPLLF + IIKP+V+++ VS
Sbjct: 111 DIFRSNSLFMGANVRKAVAEGRGDNVPIFLHEIPLLFYKKIIKPDVSLIHVS 162

Source: Drosophila miranda

Species: Drosophila miranda

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125772699|ref|XP_001357632.1| GA20688 [Drosophila pseudoobscura pseudoobscura] gi|195159232|ref|XP_002020486.1| GL13487 [Drosophila persimilis] gi|54637364|gb|EAL26766.1| GA20688 [Drosophila pseudoobscura pseudoobscura] gi|194117255|gb|EDW39298.1| GL13487 [Drosophila persimilis]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 43/52 (82%)

Query: 8   SIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
            IFRS S FM ANVRKAVAEGRGD +PIFL EIPLLF + IIKP+V+++ VS
Sbjct: 111 DIFRSNSLFMGANVRKAVAEGRGDNVPIFLHEIPLLFYKKIIKPDVSLIHVS 162

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090242|ref|XP_969571.1| PREDICTED: similar to AGAP004396-PA [Tribolium castaneum]

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 42/52 (80%)

Query: 8   SIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
            IFRS SFFM  NVRKAVAEGRGD +PIFLSEIPLLF + I +P +A++ VS
Sbjct: 108 GIFRSFSFFMGGNVRKAVAEGRGDCLPIFLSEIPLLFYKKIFQPEIALIHVS 159

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
FB|FBgn0039737	477	CG7920 [Drosophila melanogaste	0.819	0.104	0.68	2.5e-12
UNIPROTKB|Q484X1	622	CPS_1656 "4-hydroxybutyrate co	0.836	0.081	0.403	1.8e-05
TIGR_CMR|CPS_1656	622	CPS_1656 "4-hydroxybutyrate co	0.836	0.081	0.403	1.8e-05
WB|WBGene00016630	471	C44B7.10 [Caenorhabditis elega	0.803	0.104	0.469	4.2e-05
TIGR_CMR|SO_1708	428	SO_1708 "4-hydroxybutyrate coe	0.885	0.126	0.425	9.9e-05

FB|FBgn0039737 CG7920 [Drosophila melanogaster (taxid:7227)]

 Score = 173 (66.0 bits), Expect = 2.5e-12, P = 2.5e-12
 Identities = 34/50 (68%), Positives = 41/50 (82%)

Query:    10 FRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
             FRS SFFM ANVRKAVA+GRGD +PIFL EIP LF + I+KP+V+ + VS
Sbjct:   114 FRSNSFFMGANVRKAVADGRGDNVPIFLHEIPNLFYKQIVKPDVSFIHVS 163

GO:0008411 "4-hydroxybutyrate CoA-transferase activity" evidence=ISS

GO:0006084 "acetyl-CoA metabolic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q484X1 CPS_1656 "4-hydroxybutyrate coenzyme A transferase, putative/acetyltransferase, GNAT family" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 111 (44.1 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 21/52 (40%), Positives = 34/52 (65%)

Query:     9 IFRSMSFFMAA-NVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
             +F+  S F+   N+R+A+AEGRGD  P F+S++P LF    +  + A++ VS
Sbjct:    70 LFKVNSLFIGGKNIREAIAEGRGDYTPCFISDVPRLFNENSLPLDAALIMVS 121

GO:0008411 "4-hydroxybutyrate CoA-transferase activity" evidence=ISS

TIGR_CMR|CPS_1656 CPS_1656 "4-hydroxybutyrate coenzyme A transferase, putative/acetyltransferase, GNAT family" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 111 (44.1 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 21/52 (40%), Positives = 34/52 (65%)

Query:     9 IFRSMSFFMAA-NVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
             +F+  S F+   N+R+A+AEGRGD  P F+S++P LF    +  + A++ VS
Sbjct:    70 LFKVNSLFIGGKNIREAIAEGRGDYTPCFISDVPRLFNENSLPLDAALIMVS 121

GO:0008080 "N-acetyltransferase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

GO:0008411 "4-hydroxybutyrate CoA-transferase activity" evidence=ISS

WB|WBGene00016630 C44B7.10 [Caenorhabditis elegans (taxid:6239)]

 Score = 106 (42.4 bits), Expect = 4.2e-05, P = 4.2e-05
 Identities = 23/49 (46%), Positives = 30/49 (61%)

Query:    11 RSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
             RS S F   N+R  V  G  D    FL E+PLLF++G IK N +++QVS
Sbjct:   107 RSNSLFTGHNLRACVNNGIADFNSCFLYEVPLLFRKGAIKLNASLIQVS 155

GO:0003824 "catalytic activity" evidence=IEA

GO:0006084 "acetyl-CoA metabolic process" evidence=IEA

TIGR_CMR|SO_1708 SO_1708 "4-hydroxybutyrate coenzyme A transferase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 102 (41.0 bits), Expect = 9.9e-05, P = 9.9e-05
 Identities = 23/54 (42%), Positives = 30/54 (55%)

Query:     6 ILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
             +L   R   FF     R  +  G  D +PIFLSE+P LF+ G  K + AI+QVS
Sbjct:    66 LLGHLRHRCFFGGVPTRPLLQSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVS 119


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.334   0.145   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       61        61   0.00091  102 3  10 21  0.38    27
                                                     29  0.39    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  440 (47 KB)
  Total size of DFA:  79 KB (2064 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:03
  No. of threads or processors used:  24
  Search cpu time:  7.98u 0.08s 8.06t   Elapsed:  00:00:11
  Total cpu time:  7.98u 0.08s 8.06t   Elapsed:  00:00:14
  Start:  Thu Aug 15 12:04:18 2013   End:  Thu Aug 15 12:04:32 2013

GO:0008411 "4-hydroxybutyrate CoA-transferase activity" evidence=ISS

GO:0009061 "anaerobic respiration" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	61
COG0427	501	COG0427, ACH1, Acetyl-CoA hydrolase [Energy produc	7e-07
pfam02550	198	pfam02550, AcetylCoA_hydro, Acetyl-CoA hydrolase/t	6e-05

>gnl|CDD|223504 COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and conversion]

 Score = 43.5 bits (103), Expect = 7e-07
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 8   SIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIK-PNVAIVQVSII 61
            + R   + + + VRKA+ EG  D +   LSE+P L ++G +   ++A+++ S I
Sbjct: 86  EVIRRAPYQVYSPVRKAINEGGVDFVDQHLSEVPQLLRKGFLGDIDIALIEASAI 140

Length = 501

>gnl|CDD|217098 pfam02550, AcetylCoA_hydro, Acetyl-CoA hydrolase/transferase N-terminal domain

 Score = 37.9 bits (88), Expect = 6e-05
 Identities = 14/51 (27%), Positives = 27/51 (52%)

Query: 9   IFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
           ++R          RKA+ +G    +   LSE+P LF+ G +  +VA+++ +
Sbjct: 83  LYRPAPKQSGELGRKAINQGLASFVDKHLSEVPQLFEYGFVPIDVALIETT 133

This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase EC:3.1.2.1 catalyzes the formation of acetate from acetyl-CoA, CoA transferase (CAT1) EC:2.8.3.- produces succinyl-CoA, and acetate-CoA transferase EC:2.8.3.8 utilises acyl-CoA and acetate to form acetyl-CoA. Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	61
PF02550	198	AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase	99.78
KOG2828|consensus	454		99.48
TIGR03458	485	YgfH_subfam succinate CoA transferases. A closely	99.47
COG0427	501	ACH1 Acetyl-CoA hydrolase [Energy production and c	98.86
TIGR01110	543	mdcA malonate decarboxylase, alpha subunit. This m	98.47
TIGR01584	492	citF citrate lyase, alpha subunit. This is a model	93.64
PF14503	232	YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B.	84.79

>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA

Probab=99.78  E-value=2.4e-19  Score=109.68  Aligned_cols=59  Identities=51%  Similarity=0.738  Sum_probs=49.1

Q ss_pred             chhhcCCeEEeccccCHHHHHHHhcCceeeEeccCcchHHHHHcCCCCCCEEEEEeecC
Q psy11853          3 ITHILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII   61 (61)
Q Consensus         3 ~~~~~~~~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~~~dv~~~~VSPm   61 (61)
                      .++...+++.+|||.|+.+|+++++|+++|+|+|||++|++++++..++|||++|||||
T Consensus        77 ~~~~~~~~~~~s~f~~~~~R~~~~~G~~~y~p~~ls~~p~~~~~~~~~~Dvaii~vSp~  135 (198)
T PF02550_consen   77 APESAFHFRHNSFFVGPNERKAINQGRVDYVPIHLSEIPRLFRRGFIPIDVAIIQVSPM  135 (198)
T ss_dssp             SGCCTCCEEEEESS--HHHHHHHHTTSSEES--BGGGHHHHHHTTSSH-SEEEEEECEE
T ss_pred             chhhhhhcccCcccCCHHHHHHHHCCCeEEECccHHHhHHHHHcCCCCCCEEEEEecCc
Confidence            45566778889999999999999999999999999999999998777799999999997

Acetyl-CoA hydrolase 3.1.2.1 from EC from yeast catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) 2.8.3 from EC produces succinyl-CoA, and acetate-CoA transferase 2.8.3.8 from EC utilises acyl-CoA and acetate to form acetyl-CoA.; GO: 0003824 catalytic activity, 0006084 acetyl-CoA metabolic process; PDB: 2NVV_C 2G39_A 3D3U_A 3S8D_B 3QLI_B 3QLK_B 3GK7_B 3QDQ_A 3EH7_A 2OAS_A ....

>KOG2828|consensus

Probab=99.48  E-value=1.3e-14  Score=96.42  Aligned_cols=59  Identities=37%  Similarity=0.527  Sum_probs=56.6

Q ss_pred             chhhcCCeEEeccccCHHHHHHHhcCceeeEeccCcchHHHHHcCCCCCCEEEEEeecC
Q psy11853          3 ITHILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII   61 (61)
Q Consensus         3 ~~~~~~~~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~~~dv~~~~VSPm   61 (61)
                      .||+.++++-+|.|+|+..||+++.|+++|.|+|||++|.+|..|...+|+++++|||+
T Consensus        84 ~pe~~~~iq~ns~fvg~~irK~Vn~Gradf~pifLsevP~l~t~G~~~~d~alI~vSpp  142 (454)
T KOG2828|consen   84 WPEYDMIIQRNSHFVGKPIRKAVNLGRADFFPIFLSEVPQLLTYGTYTLDFALIEVSPP  142 (454)
T ss_pred             ChhhhhhhhcCccccCcchHHHhhcCccccchhHHHhchHHHhcceeeceeEEEEecCC
Confidence            57889999999999999999999999999999999999999998889999999999996

>TIGR03458 YgfH_subfam succinate CoA transferases

Probab=99.47  E-value=9.2e-14  Score=94.57  Aligned_cols=58  Identities=17%  Similarity=0.255  Sum_probs=52.6

Q ss_pred             hhhcCCeEEe-ccccCHHHHHHHhcCceeeEeccCcchHHHHHcCC-CCCCEEEEEeecC
Q psy11853          4 THILSIFRSM-SFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGI-IKPNVAIVQVSII   61 (61)
Q Consensus         4 ~~~~~~~~~~-s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~-~~~dv~~~~VSPm   61 (61)
                      ++.+++|+++ +||.++..||++++|+++|+|++||++|++++.+. +++||+++|||||
T Consensus        68 l~~~g~v~~~is~~~sp~~Rkai~~G~i~y~P~~ls~ip~~lrag~~g~~DValI~VSp~  127 (485)
T TIGR03458        68 LAEADAIARRLPYQSDPTLRKKINAGEVMYVDMHLSHVAQQLRYGFLGKVDVAVIEAAAI  127 (485)
T ss_pred             ccccCCEEEEecccCCHHHHHHHHcCCCEEEeccHHHHHHHHHhcCCCCCCEEEEEEEeC
Confidence            4566899988 79999999999999999999999999999998665 4899999999997

A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.

>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion]

Probab=98.86  E-value=1.5e-09  Score=74.10  Aligned_cols=54  Identities=31%  Similarity=0.578  Sum_probs=48.9

Q ss_pred             CCeEEeccccCHHHHHHHhcCceeeEeccCcchHHHHHcCCCC-CCEEEEEeecC
Q psy11853          8 SIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIK-PNVAIVQVSII   61 (61)
Q Consensus         8 ~~~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~~-~dv~~~~VSPm   61 (61)
                      .-++..++|.++..||++|+|.++|+|.|||+.|+.++++.++ +|++++++|+|
T Consensus        86 ~~~~r~p~q~~~~~Rk~iN~g~~~f~d~~ls~~~~~~~~~~~~~iDia~ie~s~i  140 (501)
T COG0427          86 EVIRRAPYQVYSPVRKAINEGGVDFVDQHLSEVPQLLRKGFLGDIDIALIEASAI  140 (501)
T ss_pred             chhhhCccccCHHHHHHHhccCcchhhhhHhhhhHhhcccccCCCcEEEEEeccc
Confidence            4477788888999999999999999999999999999877665 89999999986

>TIGR01110 mdcA malonate decarboxylase, alpha subunit

Probab=98.47  E-value=1.5e-07  Score=65.00  Aligned_cols=42  Identities=14%  Similarity=0.226  Sum_probs=37.0

Q ss_pred             CHHHHHHHhcCceeeEeccC--cchHHHHHcCCCCCCEEEEEeecC
Q psy11853         18 AANVRKAVAEGRGDAIPIFL--SEIPLLFKRGIIKPNVAIVQVSII   61 (61)
Q Consensus        18 g~~~Rk~~~~g~~~~vP~~~--s~~p~~~~~~~~~~dv~~~~VSPm   61 (61)
                      ++--|+++++|+++|+|+||  |++|++++  .+++||++++||||
T Consensus       105 ~~R~~~av~~G~id~iPih~~lse~pRlf~--~L~pDVALI~aSpA  148 (543)
T TIGR01110       105 SLRIAQLLEDGKLEIGAIHTYLELYSRYFV--DLTPNVSLIAAYEA  148 (543)
T ss_pred             hHHHHHHHHcCCeeEeehhchHhhhhhhhh--ccCCcEEEEECCcC
Confidence            33447999999999999999  99999986  47899999999996

This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.

>TIGR01584 citF citrate lyase, alpha subunit

Probab=93.64  E-value=0.067  Score=37.38  Aligned_cols=49  Identities=14%  Similarity=0.077  Sum_probs=34.7

Q ss_pred             EeccccCHHHHHHHhcCcee---eEeccCcchHHHHHcCCCCCCEEEEEeecC
Q psy11853         12 SMSFFMAANVRKAVAEGRGD---AIPIFLSEIPLLFKRGIIKPNVAIVQVSII   61 (61)
Q Consensus        12 ~~s~f~g~~~Rk~~~~g~~~---~vP~~~s~~p~~~~~~~~~~dv~~~~VSPm   61 (61)
                      ..|-++.+..-+++..|...   .+-.|=- =++++++|.+++|||+++||||
T Consensus       100 i~~sg~~g~~~~~is~g~l~~p~~~~shgg-r~r~i~~g~l~iDVAfI~Vsp~  151 (492)
T TIGR01584       100 ITSSGLRGTLGDEISKGILKKPVIIRSHGG-RARAIETGELHIDVAFLGVPCC  151 (492)
T ss_pred             EEeCCcCchHHHHHhcCCCCCCeEEecCCc-HHHHHhcCCCCCCEEEEeCCCc
Confidence            56677878788888888653   2222222 3456776788999999999997

This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.

>PF14503 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B

Probab=84.79  E-value=1  Score=28.75  Aligned_cols=37  Identities=14%  Similarity=0.138  Sum_probs=23.0

Q ss_pred             HHHHHHhcCceeeEeccCcchHHHHHcCCCCCCEEEEEe
Q psy11853         20 NVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQV   58 (61)
Q Consensus        20 ~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~~~dv~~~~V   58 (61)
                      .++...+...++||++.|++++..+.+|  .+|.++.-.
T Consensus       129 LT~~~~~gk~Ve~Vei~Y~q~~~~l~~g--~IDA~IWN~  165 (232)
T PF14503_consen  129 LTEAEFEGKNVEFVEIPYNQLLELLRSG--EIDAAIWNY  165 (232)
T ss_dssp             HHHHHHTTS--EEEE--HHHHHHHHHHT--S--EEEEE-
T ss_pred             HHHHHhCCCceEEEEecHHHHHHHHHCC--CccEEEECC
Confidence            3455555557899999999999999875  579888654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	61
3eh7_A	434	The Structure Of A Putative 4-Hydroxybutyrate Coa-T		1e-07
2oas_A	436	Crystal Structure Of 4-Hydroxybutyrate Coenzyme A T		5e-06
3gk7_A	448	Crystal Structure Of 4-Hydroxybutyrate Coa-Transfer		5e-04
3d3u_A	439	Crystal Structure Of 4-Hydroxybutyrate Coa-Transfer		6e-04

>pdb|3EH7|A Chain A, The Structure Of A Putative 4-Hydroxybutyrate Coa-Transferase From Porphyromonas Gingivalis W83 Length = 434

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 10  FRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
           FR ++ F+  N RKAV E R D IP+F  E+P   ++ I+  +VAIVQ+S
Sbjct: 79  FRHITNFVGGNSRKAVEENRADFIPVFFYEVPSXIRKDILHIDVAIVQLS 128

>pdb|2OAS|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coenzyme A Transferase (Atoa) In Complex With Coa From Shewanella Oneidensis, Northeast Structural Genomics Target Sor119. Length = 436

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 6   ILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
           +L   R   FF     R  +  G  D +PIFLSE+P LF+ G  K + AI+QVS
Sbjct: 66  LLGHLRHRCFFGGVPTRPLLQSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVS 119

>pdb|3GK7|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase From Clostridium Aminobutyricum Length = 448

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 10  FRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
           F    +F + + R ++AEG G  +P+F  E+P L ++ I   +V +V VS
Sbjct: 75  FTFEGWFTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVS 124

>pdb|3D3U|A Chain A, Crystal Structure Of 4-Hydroxybutyrate Coa-Transferase (Abft-2) From Porphyromonas Gingivalis. Northeast Structural Genomics Consortium Target Pgr26 Length = 439

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 16  FMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
           F+  N R A  + R D IP    E+P LF++G    +VA+VQVS
Sbjct: 82  FLEGNSRPASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVS 125
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	61
3eh7_A	434	4-hydroxybutyrate COA-transferase; citrate lyase,	5e-15
3gk7_A	448	4-hydroxybutyrate COA-transferase; alpha/beta prot	8e-15
2oas_A	436	ATOA, 4-hydroxybutyrate coenzyme A transferase; al	2e-14
3d3u_A	439	4-hydroxybutyrate COA-transferase; alpha-beta prot	2e-14
2g39_A	497	Acetyl-COA hydrolase; coenzyme A transferase, stru	2e-13
2nvv_A	506	Acetyl-COA hydrolase/transferase family protein; a	8e-12
3qli_A	455	Coenzyme A transferase; COEN transferase; 1.90A {Y	1e-09

>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis} Length = 434

 Score = 65.9 bits (161), Expect = 5e-15
 Identities = 23/51 (45%), Positives = 34/51 (66%)

Query: 9   IFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
            FR ++ F+  N RKAV E R D IP+F  E+P + ++ I+  +VAIVQ+S
Sbjct: 78  HFRHITNFVGGNSRKAVEENRADFIPVFFYEVPSMIRKDILHIDVAIVQLS 128

>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A* Length = 448

 Score = 65.2 bits (159), Expect = 8e-15
 Identities = 17/51 (33%), Positives = 29/51 (56%)

Query: 9   IFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
            F    +F + + R ++AEG G  +P+F  E+P L ++ I   +V +V VS
Sbjct: 74  NFTFEGWFTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVS 124

>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis} Length = 436

 Score = 64.3 bits (157), Expect = 2e-14
 Identities = 22/50 (44%), Positives = 28/50 (56%)

Query: 10  FRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
            R   FF     R  +  G  D +PIFLSE+P LF+ G  K + AI+QVS
Sbjct: 70  LRHRCFFGGVPTRPLLQSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVS 119

>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis} Length = 439

 Score = 64.4 bits (157), Expect = 2e-14
 Identities = 19/50 (38%), Positives = 26/50 (52%)

Query: 10  FRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVS 59
                 F+  N R A  + R D IP    E+P LF++G    +VA+VQVS
Sbjct: 76  VHPTLNFLEGNSRPASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVS 125

>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2 Length = 497

 Score = 61.4 bits (149), Expect = 2e-13
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 9   IFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGII-KPNVAIVQVS 59
           + R M F + + +RKA+  G    I   LSE     +   +  P++A+++ +
Sbjct: 82  LARRMPFQVDSTLRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAA 133

>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis} Length = 506

 Score = 56.8 bits (137), Expect = 8e-12
 Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 8   SIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGII-KPNVAIVQVS 59
           ++     +    ++R  +  G      + LS +    + G   K +VAI++V+
Sbjct: 76  AVKFRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVA 128

>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A Length = 455

 Score = 50.5 bits (121), Expect = 1e-09
 Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 8/57 (14%)

Query: 10  FRSMSFFMAANVRKAVAEGRGDA-------IPIFLSEIPLLFKRGIIKPNVAIVQVS 59
            +  S F+ A  R  +  G  D        +P    + P L     I  +  +  VS
Sbjct: 94  IKPYSMFVTAVERALIRRGIEDGGRKVVNYVPSNFHQAPRLLAEE-IGIDTFMHTVS 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	61
3gk7_A	448	4-hydroxybutyrate COA-transferase; alpha/beta prot	99.62
3qli_A	455	Coenzyme A transferase; COEN transferase; 1.90A {Y	99.6
3eh7_A	434	4-hydroxybutyrate COA-transferase; citrate lyase,	99.53
2oas_A	436	ATOA, 4-hydroxybutyrate coenzyme A transferase; al	99.32
3d3u_A	439	4-hydroxybutyrate COA-transferase; alpha-beta prot	99.27
4eu9_A	514	Succinyl-COA:acetate coenzyme A transferase; HET:	99.27
2g39_A	497	Acetyl-COA hydrolase; coenzyme A transferase, stru	99.07
2nvv_A	506	Acetyl-COA hydrolase/transferase family protein; a	99.07
2hj0_A	519	Putative citrate lyase, ALFA subunit; alpha beta p	98.85
1xr4_A	509	Putative citrate lyase alpha chain/citrate-ACP TR;	98.73
1k6d_A	220	Acetate COA-transferase alpha subunit; structural	98.12
3cdk_A	241	Succinyl-COA:3-ketoacid-coenzyme A transferase sub	97.8
2ahu_A	531	Putative enzyme YDIF; COA transferase, glutamyl th	97.34
1poi_A	317	Glutaconate coenzyme A-transferase; COA, glutamate	97.06
3rrl_A	235	Succinyl-COA:3-ketoacid-coenzyme A transferase SU;	95.52

>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*

Probab=99.62  E-value=5e-16  Score=103.72  Aligned_cols=60  Identities=28%  Similarity=0.502  Sum_probs=56.4

Q ss_pred             CchhhcCCeEEeccccCHHHHHHHhcCceeeEeccCcchHHHHHcCCCCCCEEEEEeecC
Q psy11853          2 MITHILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII   61 (61)
Q Consensus         2 ~~~~~~~~~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~~~dv~~~~VSPm   61 (61)
                      .++++.++|++++||+++..|+++++|+++|+|+|||++|+++++|.+++|||+++|||+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~r~~i~~G~~~~~p~~ls~~p~~~~~g~~~~DVAli~as~~  126 (448)
T 3gk7_A           67 SKPEYKENFTFEGWFTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPP  126 (448)
T ss_dssp             GSGGGTTTEEEEESSCCTTTHHHHHHTSSEECCCCGGGHHHHHHTTTTCCSEEEEEECCC
T ss_pred             cChHHhCcEEEecCcCCHHHHhHHhCCCeeEECchHHhHHHHHHhCCCCCCEEEEEEecC
Confidence            457788999999999999999999999999999999999999998888999999999985

>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A

Probab=99.60  E-value=9.5e-16  Score=102.60  Aligned_cols=59  Identities=19%  Similarity=0.243  Sum_probs=54.8

Q ss_pred             CchhhcCCeEEeccccCHHHHHHHhcCc-------eeeEeccCcchHHHHHcCCCCCCEEEEEeecC
Q psy11853          2 MITHILSIFRSMSFFMAANVRKAVAEGR-------GDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII   61 (61)
Q Consensus         2 ~~~~~~~~~~~~s~f~g~~~Rk~~~~g~-------~~~vP~~~s~~p~~~~~~~~~~dv~~~~VSPm   61 (61)
                      +++++.++|++++||+|+.+||++++|+       ++|+|+|||++|+++++ .+++|||+++|||+
T Consensus        86 ~~~~~~~~~~~~~~f~~~~~R~~i~~G~~~~~~~~~~y~p~~ls~~p~~~~~-~~~iDVAli~vs~~  151 (455)
T 3qli_A           86 LRYELNNRIKPYSMFVTAVERALIRRGIEDGGRKVVNYVPSNFHQAPRLLAE-EIGIDTFMHTVSPM  151 (455)
T ss_dssp             TCGGGTTTEEEEESSCCHHHHHHHHHHHHTTTCCCCCCCCCCGGGHHHHHHT-TTCCSEEEEEECCC
T ss_pred             hChhhcCcEEEeeCcCChhHHHHHhCCCcccCcCcEEEECccHHHHHHHHHh-cCCCCEEEEEEecC
Confidence            4567889999999999999999999997       99999999999999986 67899999999986

>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}

Probab=99.53  E-value=2.9e-15  Score=99.67  Aligned_cols=60  Identities=40%  Similarity=0.687  Sum_probs=31.3

Q ss_pred             CchhhcCCeEEeccccCHHHHHHHhcCceeeEeccCcchHHHHHcCCCCCCEEEEEeecC
Q psy11853          2 MITHILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII   61 (61)
Q Consensus         2 ~~~~~~~~~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~~~dv~~~~VSPm   61 (61)
                      +++++.++|++++||+++..|+++++|+++|+|+|||++|+++++|.+++|||+++|||+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~r~~i~~G~~~~~p~~ls~~~~~~~~g~~~~DVAli~as~~  130 (434)
T 3eh7_A           71 MAPEMAPHFRHITNFVGGNSRKAVEENRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMP  130 (434)
T ss_dssp             ---------------------------CTTCCCCCGGGHHHHHHTTSSCCSEEEEEECCC
T ss_pred             cChhhhCeEEEecCcCCHHHHHHHHCCCccccChhHHHHHHHHHhCCCCCcEEEEEEecC
Confidence            456778899999999999999999999999999999999999998778999999999985

>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}

Probab=99.32  E-value=2.8e-12  Score=85.25  Aligned_cols=59  Identities=39%  Similarity=0.581  Sum_probs=54.5

Q ss_pred             chhhcCCeEEeccccCHHHHHHHhcCceeeEeccCcchHHHHHcCCCCCCEEEEEeecC
Q psy11853          3 ITHILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII   61 (61)
Q Consensus         3 ~~~~~~~~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~~~dv~~~~VSPm   61 (61)
                      ++++.+++++++||.++..|+++++|.++|+|++||++|++++++.+++|||+++|||+
T Consensus        63 ~~~l~~~i~~~~~~~~~~lr~~i~~G~~~y~P~~ls~~~~~l~~~~l~~DVAlI~as~a  121 (436)
T 2oas_A           63 HPSLLGHLRHRCFFGGVPTRPLLQSGDADYVPIFLSEVPKLFRSGEQKIDTAIIQVSPP  121 (436)
T ss_dssp             SGGGTTTEEEEESSCCTTTHHHHHTTSSEECCCCGGGHHHHHHTTSSCCSEEEEEECCC
T ss_pred             HHHhcCcEEEeecCCCHHHHHHHHcCCCeeeCCccccHHHHHHcCCCCCCEEEEEeccC
Confidence            34677899999999999999999999999999999999999987778899999999986

>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}

Probab=99.27  E-value=4.5e-12  Score=84.10  Aligned_cols=60  Identities=33%  Similarity=0.478  Sum_probs=35.3

Q ss_pred             CchhhcCCeEEeccccCHHHHHHHhcCceeeEeccCcchHHHHHcCCCCCCEEEEEeecC
Q psy11853          2 MITHILSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGIIKPNVAIVQVSII   61 (61)
Q Consensus         2 ~~~~~~~~~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~~~dv~~~~VSPm   61 (61)
                      +++++.+++++.+||.++..|+++++|.++|+|++||++|++++++.+++|||+++||++
T Consensus        68 ~~~~l~~~i~~~~~~~g~~~r~~i~~G~~~~~P~~ls~~~~~l~~~~l~~DVAlI~as~~  127 (439)
T 3d3u_A           68 LAPEMRSHVHPTLNFLEGNSRPASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTP  127 (439)
T ss_dssp             SSGGGTTTEEEEC--------------------CCGGGHHHHHTTSSSCCSEEEEEEECC
T ss_pred             ccHHhCCcEEEEECCCChHHHHHHHcCCCeEECCCcchHHHHHHcCCCCCCEEEEEEecC
Confidence            345678999999999999999999999999999999999999987778899999999985

>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*

Probab=99.27  E-value=6.5e-12  Score=84.75  Aligned_cols=55  Identities=20%  Similarity=0.265  Sum_probs=49.3

Q ss_pred             cCCeEEeccccCHHHHHHHhcCceeeEeccCcchHHHHHcC-CCCCCEEEEEeecC
Q psy11853          7 LSIFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRG-IIKPNVAIVQVSII   61 (61)
Q Consensus         7 ~~~~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~-~~~~dv~~~~VSPm   61 (61)
                      ...++..+||.++..|+++++|+++|+|++||++|++++++ .+++|||+++||||
T Consensus        84 g~i~~~~~~~~~~~~R~~i~~G~~~y~p~~ls~~~~~~~~~~~~~iDVAlI~as~~  139 (514)
T 4eu9_A           84 NGVYFRSPFNTDATMRNRINAGETEYFDNHLGQVAGRAVQGNYGKFNIALVEATAI  139 (514)
T ss_dssp             TCEEEEESCCCCHHHHHHHHTTSSEECCCCGGGHHHHHHHTTTCCCCEEEEEEEEE
T ss_pred             CCEEEEEecCCCHHHHHHHHcCCeeEECccccchHHHHHhccCCCceEEEEEEEcC
Confidence            34578899999999999999999999999999999998765 46899999999985

>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2

Probab=99.07  E-value=2.5e-10  Score=77.03  Aligned_cols=55  Identities=22%  Similarity=0.347  Sum_probs=48.9

Q ss_pred             cCCeEEe-ccccCHHHHHHHhcCceeeEeccCcchHHHHHcCCC-CCCEEEEEeecC
Q psy11853          7 LSIFRSM-SFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGII-KPNVAIVQVSII   61 (61)
Q Consensus         7 ~~~~~~~-s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~-~~dv~~~~VSPm   61 (61)
                      .+.++.. +||.++..|+++++|.++|+|.+||++|++++++.+ ++|||+++|||+
T Consensus        79 ~g~v~~~~~~~~~~~~r~~i~~G~v~fvP~~ls~~~~~l~~~~l~~~DVAlI~as~a  135 (497)
T 2g39_A           79 AGVLARRMPFQVDSTLRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAI  135 (497)
T ss_dssp             TTCEEEEESCCCCHHHHHHHHTTSSEECCCCTTTHHHHHHTTSSCCCSEEEEEESEE
T ss_pred             CCceEEEEeeCCCHHHHHHHHcCCCeEECCccccHHHHHHcCCcCCCCEEEEEeccc
Confidence            3677775 588899999999999999999999999999987777 699999999974

>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}

Probab=99.07  E-value=2.2e-10  Score=77.47  Aligned_cols=54  Identities=19%  Similarity=0.327  Sum_probs=48.7

Q ss_pred             CCeEEe-ccccCHHHHHHHhcCceeeEeccCcchHHHHHcCCC-CCCEEEEEeecC
Q psy11853          8 SIFRSM-SFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGII-KPNVAIVQVSII   61 (61)
Q Consensus         8 ~~~~~~-s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~~-~~dv~~~~VSPm   61 (61)
                      +.++.. +||.++..|+++++|.++|+|++||++|++++++.+ ++|||+++|||+
T Consensus        75 g~v~~~~~~~~~~~~r~~i~~G~i~~~P~~ls~v~~~l~~~~l~~~DVAlI~as~a  130 (506)
T 2nvv_A           75 DAVKFRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADV  130 (506)
T ss_dssp             TCEEEEESCCCCHHHHHHHHTTSSEECCCCGGGHHHHHHTTSSCCCCEEEEEESEE
T ss_pred             CceEEEeeeCCCHHHHHHHHcCCCeEeCCCcccHHHHHHcCCcCCCCEEEEEeccc
Confidence            678875 588899999999999999999999999999987777 699999999975

>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}

Probab=98.85  E-value=1.6e-09  Score=73.47  Aligned_cols=53  Identities=17%  Similarity=0.126  Sum_probs=47.3

Q ss_pred             CCeEEeccccCHHHHHHHhcCceeeEeccCcc---hHHHHHcCCCCCCEEEEEeecC
Q psy11853          8 SIFRSMSFFMAANVRKAVAEGRGDAIPIFLSE---IPLLFKRGIIKPNVAIVQVSII   61 (61)
Q Consensus         8 ~~~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~---~p~~~~~~~~~~dv~~~~VSPm   61 (61)
                      ..+++.+||+++..|+++++|. +|+|.+||+   .|.+++++.+++|||++++||+
T Consensus       117 ~v~r~~~~~~g~~~r~~i~~G~-~~~P~~l~~~gG~~~ll~~~~l~~DVAlI~as~a  172 (519)
T 2hj0_A          117 VVTNITSSGLRDKVGAAISEGI-MENPVIIRSHGGRARAIATDDIHIDVAFLGAPSS  172 (519)
T ss_dssp             SEEEEEESBCHHHHHHHHHTTC-CSSCEEECCHHHHHHHHHHTSSCCSEEEEEESEE
T ss_pred             cEEEEEecCCCcHHHHHHHCCC-CCCCceeeccCCHHHHHhcCCCCCcEEEEEeccc
Confidence            4466789999999999999998 999999999   9999976678899999999984

>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2

Probab=98.73  E-value=1e-08  Score=69.39  Aligned_cols=51  Identities=14%  Similarity=0.198  Sum_probs=45.7

Q ss_pred             eEEeccccCHHHHHHHhcCceeeEeccCcc---hHHHHHcCCCCCCEEEEEeecC
Q psy11853         10 FRSMSFFMAANVRKAVAEGRGDAIPIFLSE---IPLLFKRGIIKPNVAIVQVSII   61 (61)
Q Consensus        10 ~~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~---~p~~~~~~~~~~dv~~~~VSPm   61 (61)
                      .++.+||.++..|+++++|.++| |.+|+.   .|++++++.+++|||++++||+
T Consensus       116 ~r~~~~~~g~~~r~~i~~G~~~~-P~~~s~~~g~p~ll~~~~l~iDVAlI~as~a  169 (509)
T 1xr4_A          116 RQIYTSGLRGKLGEEISAGLMEN-PVQIHSHGGRVKLIQSGELNIDVAFLGVPCC  169 (509)
T ss_dssp             EEEEESBCCHHHHHHHHHTCCSS-CEEECCHHHHHHHHHTTSSCCSEEEEEESEE
T ss_pred             EEEEEccCCHHHHHHHHcCCCcC-CeeEeccCCHHHHHhcCCCCceEEEEEeccC
Confidence            45889999999999999999888 999997   9999976678999999999974

>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2

Probab=98.12  E-value=2.7e-07  Score=56.48  Aligned_cols=56  Identities=11%  Similarity=0.155  Sum_probs=40.7

Q ss_pred             hhcCCeEEeccccCHHHHHHHhcCceee------------------EeccCcch------------------HHHHHcCC
Q psy11853          5 HILSIFRSMSFFMAANVRKAVAEGRGDA------------------IPIFLSEI------------------PLLFKRGI   48 (61)
Q Consensus         5 ~~~~~~~~~s~f~g~~~Rk~~~~g~~~~------------------vP~~~s~~------------------p~~~~~~~   48 (61)
                      ++.+++....|+.++..|+++++|.+++                  +|.+|+.+                  +.++ +..
T Consensus        68 g~v~~~~~s~~~~~~~~r~~~~~G~ie~~~~p~g~~~~~~ra~~~g~P~~~t~~g~gt~v~~g~~~~~~~g~~~l~-~~~  146 (220)
T 1k6d_A           68 GRVRKVIASHIGTNPETGRRMISGEMDVVLVPQGTLIEQIRCGGAGLGGFLTPTGVGTVVEEGKQTLTLDGKTWLL-ERP  146 (220)
T ss_dssp             TCEEEEEESBCTTCHHHHHHHHTTSSEEEECCHHHHHHHHHHHHTTCCEEEESTTTTCC--CCSCEEEETTEEEEE-ECC
T ss_pred             CCccEEEEcCCCCCHHHHHHHHCCCeEEEecChHHHHHHHHHHhCCCCeEEeecccCceeccCceeEeeCCeEEEE-ecC
Confidence            3444554434567899999999999776                  88888765                  3333 345


Q ss_pred             CCCCEEEEEeecC
Q psy11853         49 IKPNVAIVQVSII   61 (61)
Q Consensus        49 ~~~dv~~~~VSPm   61 (61)
                      +++|||++++|++
T Consensus       147 l~~DVAli~a~~a  159 (220)
T 1k6d_A          147 LRADLALIRAHRC  159 (220)
T ss_dssp             CCEEEEEEEEEEE
T ss_pred             CCCcEEEEEeecC
Confidence            7899999999985

>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis}

Probab=97.80  E-value=1.8e-06  Score=53.58  Aligned_cols=54  Identities=17%  Similarity=0.070  Sum_probs=36.1

Q ss_pred             CCeEEeccccCHHHHHHHhcCceee------------------EeccCcch-----------------HHHHHcCCCCCC
Q psy11853          8 SIFRSMSFFMAANVRKAVAEGRGDA------------------IPIFLSEI-----------------PLLFKRGIIKPN   52 (61)
Q Consensus         8 ~~~~~~s~f~g~~~Rk~~~~g~~~~------------------vP~~~s~~-----------------p~~~~~~~~~~d   52 (61)
                      +++....|+.++..|+++++|.+++                  +|.+|+.+                 ..++.+..+++|
T Consensus        74 ~~~~~s~~g~~~~~r~~~~~G~ie~~~~p~g~l~~~~ra~~~g~P~~~t~~g~gT~v~~g~~~~~~~g~~~l~~~~l~~D  153 (241)
T 3cdk_A           74 KKMIASYVGENKIFERQFLSGELEVELVPQGTLAERIRAGGAGIPGFYTATGVGTSIAEGKEHKTFGGRTYVLERGITGD  153 (241)
T ss_dssp             EEEEESBCCSCHHHHHHHTTTSSEEEECCHHHHHHHHHHHHHTCCEEEESTTTTSGGGTTSCEEEETTEEEEEEECCCEE
T ss_pred             CeEEEeccCCCHHHHHHHHCCCceEEEcCHHHHHHHHHHHhcCCCeEEEecccCceeccCceeeccCCceEEEccCCCCc
Confidence            3443334557899999999999874                  66655433                 112222356899


Q ss_pred             EEEEEeecC
Q psy11853         53 VAIVQVSII   61 (61)
Q Consensus        53 v~~~~VSPm   61 (61)
                      ||++++|++
T Consensus       154 VAlI~a~~a  162 (241)
T 3cdk_A          154 VAIVKAWKA  162 (241)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEeccC
Confidence            999999985

>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*

Probab=97.34  E-value=3.4e-05  Score=52.42  Aligned_cols=29  Identities=3%  Similarity=-0.071  Sum_probs=20.8

Q ss_pred             hhhcCCeEEeccccCHHHHHHHhcCceee
Q psy11853          4 THILSIFRSMSFFMAANVRKAVAEGRGDA   32 (61)
Q Consensus         4 ~~~~~~~~~~s~f~g~~~Rk~~~~g~~~~   32 (61)
                      +++.+++....|+.++..|+++++|.+++
T Consensus        85 ~g~v~~~~~s~~g~~~~~r~~i~~G~ie~  113 (531)
T 2ahu_A           85 EGLVKWALCGHWGQSPRISDLAEQNKIIA  113 (531)
T ss_dssp             TTTEEEEEESBCTTSHHHHHHHHTTSSEE
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHCCCceE
Confidence            34445554445667899999999999766

>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2

Probab=97.06  E-value=6.7e-05  Score=48.09  Aligned_cols=19  Identities=16%  Similarity=0.167  Sum_probs=16.0

Q ss_pred             ccc-cCHHHHHHHhcCceee
Q psy11853         14 SFF-MAANVRKAVAEGRGDA   32 (61)
Q Consensus        14 s~f-~g~~~Rk~~~~g~~~~   32 (61)
                      +|+ .++..|+++++|.+++
T Consensus        78 ~~~~~~~~~r~~~~~G~ie~   97 (317)
T 1poi_A           78 GVTNVSRRFRKWFEAGKLTM   97 (317)
T ss_dssp             TTBSSCHHHHHHHHHTCSEE
T ss_pred             ccccCChHHHHHHHCCCceE
Confidence            455 6799999999999985

>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori}

Probab=95.52  E-value=0.0068  Score=37.47  Aligned_cols=33  Identities=6%  Similarity=-0.024  Sum_probs=25.5

Q ss_pred             cccCHHHHHHHhcCceeeEeccCcchHHHHHcC
Q psy11853         15 FFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRG   47 (61)
Q Consensus        15 ~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~   47 (61)
                      |..++..|+++++|.+++.-.+...+.+.+|.+
T Consensus        81 ~g~~~~~~~~~~~G~ie~~~~pqg~la~~~rag  113 (235)
T 3rrl_A           81 VGENKIFESQMLNGEIEVVLTPQGTLAENLHAG  113 (235)
T ss_dssp             CCSCHHHHHHHHHTSSEEEECCHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHcCCeEEEECCHHHHHHHHHHH
Confidence            345889999999999988777766677776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	61
d2g39a1	221	c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445)	3e-11

>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]} Length = 221

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Acetyl-CoA hydrolase (PA5445)
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 53.3 bits (128), Expect = 3e-11
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 9   IFRSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGII-KPNVAIVQVSII 61
           + R M F + + +RKA+  G    I   LSE     +   +  P++A+++ + I
Sbjct: 80  LARRMPFQVDSTLRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAI 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	61
d2g39a1	221	Acetyl-CoA hydrolase (PA5445) {Pseudomonas aerugin	99.59
d1k6da_	219	Acetate:CoA transferase alpha {Escherichia coli [T	95.03

>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Acetyl-CoA hydrolase (PA5445)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.59  E-value=9.5e-16  Score=93.00  Aligned_cols=54  Identities=24%  Similarity=0.368  Sum_probs=46.5

Q ss_pred             CCeE-EeccccCHHHHHHHhcCceeeEeccCcchHHHHHcCC-CCCCEEEEEeecC
Q psy11853          8 SIFR-SMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKRGI-IKPNVAIVQVSII   61 (61)
Q Consensus         8 ~~~~-~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~~~-~~~dv~~~~VSPm   61 (61)
                      +.+. ..++|.|+..||++++|+++|+|+|||++|++++++. .++|||+++||||
T Consensus        78 ~~~~~~~~~~~g~~~Rk~i~~G~~~~~p~~ls~~~~~~r~g~~~~iDVaii~vs~~  133 (221)
T d2g39a1          78 GVLARRMPFQVDSTLRKAINAGEVMFIDQHLSETVEQLRNHQLKLPDIAVIEAAAI  133 (221)
T ss_dssp             TCEEEEESCCCCHHHHHHHHTTSSEECCCCTTTHHHHHHTTSSCCCSEEEEEESEE
T ss_pred             CceeeeeccccCHHHHHHHHCCCeEEEeccHHHHHHHHHhcCCCCCcEEEEEEecC
Confidence            4454 4455678999999999999999999999999999875 4899999999996

>d1k6da_ c.124.1.2 (A:) Acetate:CoA transferase alpha {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase alpha subunit-like
domain: Acetate:CoA transferase alpha
species: Escherichia coli [TaxId: 562]

Probab=95.03  E-value=0.009  Score=34.56  Aligned_cols=36  Identities=6%  Similarity=-0.000  Sum_probs=27.5

Q ss_pred             EEeccccCHHHHHHHhcCceeeEeccCcchHHHHHc
Q psy11853         11 RSMSFFMAANVRKAVAEGRGDAIPIFLSEIPLLFKR   46 (61)
Q Consensus        11 ~~~s~f~g~~~Rk~~~~g~~~~vP~~~s~~p~~~~~   46 (61)
                      ....+..++..|+++++|.+++.......+...+|.
T Consensus        74 ~~~~~~~~~~~~~~~~~g~ie~~~~~~g~~~~~~ra  109 (219)
T d1k6da_          74 IASHIGTNPETGRRMISGEMDVVLVPQGTLIEQIRC  109 (219)
T ss_dssp             EESBCTTCHHHHHHHHTTSSEEEECCHHHHHHHHHH
T ss_pred             eccccccChhHHHHhhcCCceEEEccchHHHHHHHH
Confidence            334444688899999999998888877777777764