Psyllid ID: psy11920
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 884 | 2.2.26 [Sep-21-2011] | |||||||
| A6N7Y9 | 867 | Piwi-like protein 1 OS=Ga | yes | N/A | 0.847 | 0.863 | 0.4 | 1e-169 | |
| Q9JMB7 | 862 | Piwi-like protein 1 OS=Mu | yes | N/A | 0.849 | 0.871 | 0.393 | 1e-167 | |
| Q96J94 | 861 | Piwi-like protein 1 OS=Ho | yes | N/A | 0.849 | 0.872 | 0.388 | 1e-167 | |
| Q8UVX0 | 858 | Piwi-like protein 1 OS=Da | yes | N/A | 0.849 | 0.875 | 0.392 | 1e-166 | |
| A8KBF3 | 949 | Piwi-like protein 2 OS=Xe | yes | N/A | 0.895 | 0.834 | 0.369 | 1e-162 | |
| A2CEI6 | 1046 | Piwi-like protein 2 OS=Da | no | N/A | 0.899 | 0.760 | 0.350 | 1e-158 | |
| Q8TC59 | 973 | Piwi-like protein 2 OS=Ho | no | N/A | 0.957 | 0.869 | 0.340 | 1e-155 | |
| A6P7L8 | 1054 | Piwi-like protein 2 OS=On | N/A | N/A | 0.902 | 0.757 | 0.346 | 1e-155 | |
| Q8CDG1 | 971 | Piwi-like protein 2 OS=Mu | no | N/A | 0.960 | 0.874 | 0.339 | 1e-153 | |
| Q7Z3Z4 | 852 | Piwi-like protein 4 OS=Ho | no | N/A | 0.847 | 0.879 | 0.365 | 1e-147 |
| >sp|A6N7Y9|PIWL1_CHICK Piwi-like protein 1 OS=Gallus gallus GN=PIWIL1 PE=2 SV=1 | Back alignment and function desciption |
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Score = 596 bits (1536), Expect = e-169, Method: Compositional matrix adjust.
Identities = 308/770 (40%), Positives = 474/770 (61%), Gaps = 21/770 (2%)
Query: 120 GELGQPIKVMVNYIDLSVKEGSGMYEYEVKFNPPIDSRGIRNRLINSLNDLLGQYKTFDG 179
G G IK++ N+ L+ + +Y+Y V +NP +++R +R+ L+ DL+G+ FDG
Sbjct: 114 GSSGAMIKLIANFFRLTSRPQWALYQYHVDYNPEMEARRLRSGLLFQHEDLIGKTHAFDG 173
Query: 180 MNLFLPFKLSSDTVNTTCQTREGSDVQITIIFKRQRQFYE--NLMFYNILFRKIAFLLSM 237
LFLP +L + +TR G DV+ITI + L FYNI+FR++ +++
Sbjct: 174 SILFLPKRLPNKVTEVYSKTRNGEDVRITITLTNELPPTSPTCLQFYNIIFRRLLKMMNF 233
Query: 238 VQFKDCLYDPRSKLLIPQYKLEVWPGFVTAIDEYEGGLKLQIDTSCRVLRTSTCLDLIDE 297
Q Y+P+ + IP ++L VWPGF ++I +YE + L D S ++LR+ T LD +
Sbjct: 234 QQIGRNYYNPKDPVSIPNHRLMVWPGFTSSILQYEESIMLCADVSHKILRSETVLDFMYS 293
Query: 298 LKEKFGGN-FMERLSQALIGEIVLTRYNNQTYRIDEIDFKQTPMSTFTKR-GEPKSYVDY 355
L E+ F + ++ LIG IVLT+YNN+TYR+D+ID+ P TF + G SY+DY
Sbjct: 294 LYEQVEERRFRDACAKELIGVIVLTKYNNRTYRVDDIDWDANPQCTFRRADGSEISYIDY 353
Query: 356 YREAYNIEIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMRNDFQV 415
Y+ YN +I D +QP+LI++ +RK RG NV + ++PEL +LTGL++ MRNDF +
Sbjct: 354 YKRQYNQDISDLNQPVLISQYRRK--RG-NVTVGPVV--LIPELCYLTGLTEKMRNDFNM 408
Query: 416 MKSIASFTRVDPNQKLQAISKYINNVNNNKETSELLKGWGLTLNKSMETLNARILPVEKI 475
MK +A TR+ P Q+ + I K ++ + ++ + L+ WGL+ + S+ + R++ EKI
Sbjct: 409 MKDLAVHTRLSPEQRQREIGKLVDCMKKDECVQKELRDWGLSFDSSLLSFTGRVVQAEKI 468
Query: 476 YMGNNFVAPGSQEADWNRQVGTNPALTVVNFDQWVLIHIRRDQRNADNFLNCLNRNSNAI 535
N Q ADW+R+ P + D W+LI+ RR+ A+ L L + + ++
Sbjct: 469 LQAGNVFDYNPQFADWSRETRVAPLIHAKPLDNWLLIYTRRNYDAANMLLQNLFKVTPSM 528
Query: 536 GIRVKKPQVIALQEEQTLSYLTALK-SMRSDTQFVVIIFNAPRTDRYQAVKKYCCCERPI 594
GIR+ K +I + +++T +YL L+ S+ DT VV I ++ R D+Y A+KKY C + PI
Sbjct: 529 GIRMNKATMIEV-DDRTEAYLRVLQQSITPDTNIVVCILSSTRKDKYDAIKKYLCTDCPI 587
Query: 595 PSQVINSRTISREDKMKSIVMKIALQINCKLGGSLWSVQIPYDCAMVIGIDVYHEGVGSQ 654
PSQ + +RT+S+ +IV KIALQ+NCK+GG LWSV+IP M++GID YH+ + +
Sbjct: 588 PSQCVVARTLSKPQTALAIVTKIALQMNCKMGGELWSVEIPLKQLMIVGIDCYHDTLSGK 647
Query: 655 GQNIVGLVASTNKDFTTYYSQAVIQRRGQEITDSIAQPFKQALDRFIQANSVPPKQIFIF 714
Q+I G VAS N+ T ++S+ V+Q RGQEI D + + AL + + N P +I ++
Sbjct: 648 -QSIAGFVASLNEKMTRWFSRCVVQSRGQEIVDGLKACLQTALREWFKWNKYLPSRIIVY 706
Query: 715 RDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQLLSAG 774
RDGV DGQL+++ E+ Q+ + T+ Y P++T I+V+KR++T+ F G
Sbjct: 707 RDGVGDGQLNTLVNYEVPQFLDCLKTVGK-----DYNPRLTVIVVKKRVSTRFFAQAGGG 761
Query: 775 ERPNLANAPSGSVLDHTVTRKTLSDFFLVSQHVRQGTVTPSHYIVLRNDNNVKVDHLQRL 834
L N P G+V+D VTR DFF+VSQ VR G V P+HY V+ + + +K DH+QRL
Sbjct: 762 ----LKNPPPGTVVDIEVTRPEWYDFFIVSQAVRNGCVAPTHYNVVYDTSKLKPDHVQRL 817
Query: 835 SYKLCHLYYNWPGTIRVPAVCQYAHRIAYLTGMHLQRLPSDVLSDKLFYL 884
+YKLCH+YYNW G IRVPA CQYAH++A+L G + R P+ +LSD+L+YL
Sbjct: 818 TYKLCHMYYNWSGVIRVPAPCQYAHKLAFLVGQSIHREPNLLLSDRLYYL 867
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Plays a central role during gametogenesis by repressing transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Directly binds methylated piRNAs, a class of 24 to 30 nucleotide RNAs that are generated by a Dicer-independent mechanism and are primarily derived from transposons and other repeated sequence elements. Besides their function in transposable elements repression, piRNAs are probably involved in other processes during meiosis such as translation regulation. Gallus gallus (taxid: 9031) |
| >sp|Q9JMB7|PIWL1_MOUSE Piwi-like protein 1 OS=Mus musculus GN=Piwil1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q96J94|PIWL1_HUMAN Piwi-like protein 1 OS=Homo sapiens GN=PIWIL1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8UVX0|PIWL1_DANRE Piwi-like protein 1 OS=Danio rerio GN=piwil1 PE=1 SV=1 | Back alignment and function description |
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| >sp|A8KBF3|PIWL2_XENTR Piwi-like protein 2 OS=Xenopus tropicalis GN=piwil2 PE=2 SV=1 | Back alignment and function description |
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| >sp|A2CEI6|PIWL2_DANRE Piwi-like protein 2 OS=Danio rerio GN=piwil2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q8TC59|PIWL2_HUMAN Piwi-like protein 2 OS=Homo sapiens GN=PIWIL2 PE=1 SV=1 | Back alignment and function description |
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| >sp|A6P7L8|PIWL2_ONCMY Piwi-like protein 2 OS=Oncorhynchus mykiss GN=piwil2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8CDG1|PIWL2_MOUSE Piwi-like protein 2 OS=Mus musculus GN=Piwil2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q7Z3Z4|PIWL4_HUMAN Piwi-like protein 4 OS=Homo sapiens GN=PIWIL4 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 884 | ||||||
| 157117037 | 944 | PIWI [Aedes aegypti] gi|108876229|gb|EAT | 0.945 | 0.885 | 0.434 | 0.0 | |
| 158299484 | 930 | AGAP008862-PA [Anopheles gambiae str. PE | 0.916 | 0.870 | 0.429 | 0.0 | |
| 380021439 | 914 | PREDICTED: piwi-like protein 1-like [Api | 0.906 | 0.876 | 0.421 | 0.0 | |
| 321470788 | 944 | Argonaute 3 protein-like protein [Daphni | 0.958 | 0.897 | 0.397 | 0.0 | |
| 307211417 | 939 | Piwi-like protein 1 [Harpegnathos saltat | 0.857 | 0.807 | 0.432 | 0.0 | |
| 345481701 | 952 | PREDICTED: piwi-like protein 1-like [Nas | 0.869 | 0.807 | 0.431 | 0.0 | |
| 328785267 | 875 | PREDICTED: LOW QUALITY PROTEIN: argonaut | 0.869 | 0.878 | 0.426 | 0.0 | |
| 164605505 | 926 | AGO3 [Bombyx mori] | 0.953 | 0.910 | 0.409 | 0.0 | |
| 258619136 | 912 | argonaute [Apis mellifera] | 0.908 | 0.880 | 0.418 | 0.0 | |
| 166706858 | 926 | argonaute 3 [Bombyx mori] gi|166245168|d | 0.953 | 0.910 | 0.409 | 0.0 |
| >gi|157117037|ref|XP_001652945.1| PIWI [Aedes aegypti] gi|108876229|gb|EAT40454.1| AAEL007823-PA [Aedes aegypti] | Back alignment and taxonomy information |
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Score = 728 bits (1878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/884 (43%), Positives = 546/884 (61%), Gaps = 48/884 (5%)
Query: 32 TTSTDDTTGSHAPGIPSPSTSSPSQ--------ASEPAPKH-----------------IG 66
++ +DD S +PS S +Q EPAP G
Sbjct: 78 SSESDDKQSSIGSAMPSLSGRGRAQFIQALIRQPFEPAPSVVSDDSSSMVSARVSQIACG 137
Query: 67 RGRLLQQLLAKGVVPTSGTPGPGG--DAPSSPPTQQMKALSISKSKPPSEPVYFRGELGQ 124
RGR +QQLL S G D S +Q A ++ + PV G G
Sbjct: 138 RGRFIQQLLNTAADAESIETQSNGKHDELSEAVSQVTIAETVETVE--KAPVIKTGSSGT 195
Query: 125 PIKVMVNYIDLSVKEGSGMYEYEVKFNPPIDSRGIRNRLINSLNDLLGQYKTFDGMNLFL 184
P+++M NYI L+ G+YEYEV+F+P +DS+ IR R I D+LG KTFDG+ LFL
Sbjct: 196 PVRLMTNYIRLACDPDRGIYEYEVRFHPLVDSKAIRARYIAQHKDVLGNAKTFDGVKLFL 255
Query: 185 PFKLSSDTVNTTCQTR---EGSDVQITIIFKRQRQFYENLMFYNILFRKIAFLLSMVQFK 241
P KL + T Q++ +G +V I II+KR+++ EN+ FYNILF++I +L MV+
Sbjct: 256 PKKLPQAEL--TLQSKNPVDGHEVTIKIIYKRKQRMSENIQFYNILFQRIMKVLKMVEMG 313
Query: 242 DCLYDPRSKLLIPQYKLEVWPGFVTAIDEYEGGLKLQIDTSCRVLRTSTCLDLIDELKEK 301
+DP + LIPQ++LE+WPG+V+A+DEYEGGL L +D S RVL +T LD I L
Sbjct: 314 RKNFDPSAPKLIPQHRLEIWPGYVSAVDEYEGGLMLNLDVSHRVLLQTTVLDHIRTLARA 373
Query: 302 FGGNFMERLSQALIGEIVLTRYNNQTYRIDEIDFKQTPMSTFTKRGEPKSYVDYYREAYN 361
++ +++L+G ++LTRYNN+TYRID+I F Q P TF G+P SY+ YY++ YN
Sbjct: 374 NPQDYKNMATKSLLGAVILTRYNNKTYRIDDILFDQNPTMTFEANGQPISYLQYYKQQYN 433
Query: 362 IEIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMRNDFQVMKSIAS 421
I+I D QP+LI R +R+ E I ++PE+ +LTGL+D MR+DF+VM+ IA+
Sbjct: 434 IDIHDLKQPLLINRKERRVSGQDKPME--MIMCLIPEICYLTGLTDEMRSDFKVMRDIAA 491
Query: 422 FTRVDPNQKLQAISKYINNVNNNKETSELLKGWGLTLNKSMETLNARILPVEKIYMGNNF 481
FTRV PNQ+L ++ ++ NVN NKE E+L+ WGLTL+ + + R E++
Sbjct: 492 FTRVSPNQRLNSMRQFCRNVNENKEAREILEVWGLTLDMNALMMEGRCFKEEQVNFSGVN 551
Query: 482 VAPGSQEADWNRQVGTNPALTVVNFDQWVLIHIRRDQRNADNFLNCLNRNSNAIGIRVKK 541
V G + D+NR V +N L VN W+L+H +D R A +F++C+ R+ +GI++
Sbjct: 552 VGVG-KSGDFNRAVTSNNVLQAVNIRNWLLVHTAKDTRIAKSFMDCVERSCRPMGIQIGP 610
Query: 542 PQVIALQEEQTLSYLTALKS-MRSDTQFVVIIFNAPRTDRYQAVKKYCCCERPIPSQVIN 600
P + LQ ++T Y+ L++ +R +TQ VVII R DRY A+K+ CC E P+PSQVIN
Sbjct: 611 PAIEVLQADKTELYVQLLRTKIRQETQIVVIICPTSRDDRYAAIKRICCSEIPVPSQVIN 670
Query: 601 SRTISREDKMKSIVMKIALQINCKLGGSLWSVQIPYDCAMVIGIDVYHEGVGSQGQNIVG 660
+RT+S E K ++IV KI LQ+NCKLGG+LWS++IP+D M+ GID YH+ + ++
Sbjct: 671 ARTLSNEAKNRAIVQKIILQMNCKLGGTLWSIRIPFDNVMIAGIDTYHDP-KQKSNSVSA 729
Query: 661 LVASTNKDFTTYYSQAVIQRRGQEITDSIAQPFKQALDRFIQANSVPPKQIFIFRDGVSD 720
VAS N D+T +YS+A IQ + +E + + +++L + +AN PK+I IFRDGV D
Sbjct: 730 FVASLNGDYTRWYSRACIQSKKEEFINGLCASMEKSLKAYQKANCQLPKKIIIFRDGVGD 789
Query: 721 GQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQLLSAGERPNLA 780
GQL S EI Q Q+ L Y P+IT I+VQKRINT++F++ + NL
Sbjct: 790 GQLRMCSEYEIPQLQE-----SCKLVEPDYNPEITFIVVQKRINTRMFRI----DGNNLE 840
Query: 781 NAPSGSVLDHTVTRKTLSDFFLVSQHVRQGTVTPSHYIVLRNDNNVKVDHLQRLSYKLCH 840
N G+VLDHT+TR+ D+FLV Q VRQG+V+P+HYIV+ N +N D LQRLSYKLC+
Sbjct: 841 NPNPGTVLDHTITRRNHFDYFLVPQSVRQGSVSPTHYIVVHNQSNHSPDILQRLSYKLCY 900
Query: 841 LYYNWPGTIRVPAVCQYAHRIAYLTGMHLQRLPSDVLSDKLFYL 884
LYYNWPG++RVPA CQYAH++AYL G ++R P + L+DKLFYL
Sbjct: 901 LYYNWPGSVRVPACCQYAHKMAYLIGQSVKRNPDEALNDKLFYL 944
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Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158299484|ref|XP_319604.4| AGAP008862-PA [Anopheles gambiae str. PEST] gi|157013540|gb|EAA14901.5| AGAP008862-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
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| >gi|380021439|ref|XP_003694573.1| PREDICTED: piwi-like protein 1-like [Apis florea] | Back alignment and taxonomy information |
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| >gi|321470788|gb|EFX81763.1| Argonaute 3 protein-like protein [Daphnia pulex] | Back alignment and taxonomy information |
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| >gi|307211417|gb|EFN87544.1| Piwi-like protein 1 [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|345481701|ref|XP_001603582.2| PREDICTED: piwi-like protein 1-like [Nasonia vitripennis] | Back alignment and taxonomy information |
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| >gi|328785267|ref|XP_001120996.2| PREDICTED: LOW QUALITY PROTEIN: argonaute 3 [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|164605505|dbj|BAF98575.1| AGO3 [Bombyx mori] | Back alignment and taxonomy information |
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| >gi|258619136|gb|ACV84372.1| argonaute [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|166706858|ref|NP_001098067.2| argonaute 3 [Bombyx mori] gi|166245168|dbj|BAF73717.2| argonaute 3 [Bombyx mori] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 884 | ||||||
| UNIPROTKB|A6N7Y9 | 867 | PIWIL1 "Piwi-like protein 1" [ | 0.847 | 0.863 | 0.4 | 7.2e-155 | |
| UNIPROTKB|E1BXZ3 | 858 | PIWIL1 "Piwi-like protein 1" [ | 0.847 | 0.872 | 0.4 | 7.2e-155 | |
| UNIPROTKB|F1NH47 | 874 | PIWIL1 "Piwi-like protein 1" [ | 0.847 | 0.856 | 0.4 | 7.2e-155 | |
| MGI|MGI:1928897 | 862 | Piwil1 "piwi-like RNA-mediated | 0.849 | 0.871 | 0.393 | 3.1e-154 | |
| RGD|1306980 | 862 | Piwil1 "piwi-like RNA-mediated | 0.849 | 0.871 | 0.393 | 3.1e-154 | |
| UNIPROTKB|Q96J94 | 861 | PIWIL1 "Piwi-like protein 1" [ | 0.849 | 0.872 | 0.388 | 8.2e-154 | |
| UNIPROTKB|E2RDI9 | 861 | PIWIL1 "Uncharacterized protei | 0.849 | 0.872 | 0.392 | 1.1e-153 | |
| UNIPROTKB|F1RFQ4 | 861 | PIWIL1 "Piwil1 protein" [Sus s | 0.849 | 0.872 | 0.392 | 1.1e-153 | |
| UNIPROTKB|E1BJC4 | 861 | PIWIL1 "Uncharacterized protei | 0.849 | 0.872 | 0.392 | 1.3e-153 | |
| UNIPROTKB|E2RDH8 | 924 | PIWIL1 "Uncharacterized protei | 0.540 | 0.517 | 0.397 | 2.8e-152 |
| UNIPROTKB|A6N7Y9 PIWIL1 "Piwi-like protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1510 (536.6 bits), Expect = 7.2e-155, P = 7.2e-155
Identities = 308/770 (40%), Positives = 474/770 (61%)
Query: 120 GELGQPIKVMVNYIDLSVKEGSGMYEYEVKFNPPIDSRGIRNRLINSLNDLLGQYKTFDG 179
G G IK++ N+ L+ + +Y+Y V +NP +++R +R+ L+ DL+G+ FDG
Sbjct: 114 GSSGAMIKLIANFFRLTSRPQWALYQYHVDYNPEMEARRLRSGLLFQHEDLIGKTHAFDG 173
Query: 180 MNLFLPFKLSSDTVNTTCQTREGSDVQITIIFKRQRQFYEN--LMFYNILFRKIAFLLSM 237
LFLP +L + +TR G DV+ITI + L FYNI+FR++ +++
Sbjct: 174 SILFLPKRLPNKVTEVYSKTRNGEDVRITITLTNELPPTSPTCLQFYNIIFRRLLKMMNF 233
Query: 238 VQFKDCLYDPRSKLLIPQYKLEVWPGFVTAIDEYEGGLKLQIDTSCRVLRTSTCLDLIDE 297
Q Y+P+ + IP ++L VWPGF ++I +YE + L D S ++LR+ T LD +
Sbjct: 234 QQIGRNYYNPKDPVSIPNHRLMVWPGFTSSILQYEESIMLCADVSHKILRSETVLDFMYS 293
Query: 298 LKEKFGGN-FMERLSQALIGEIVLTRYNNQTYRIDEIDFKQTPMSTFTKR-GEPKSYVDY 355
L E+ F + ++ LIG IVLT+YNN+TYR+D+ID+ P TF + G SY+DY
Sbjct: 294 LYEQVEERRFRDACAKELIGVIVLTKYNNRTYRVDDIDWDANPQCTFRRADGSEISYIDY 353
Query: 356 YREAYNIEIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMRNDFQV 415
Y+ YN +I D +QP+LI++ +RK RG NV + ++PEL +LTGL++ MRNDF +
Sbjct: 354 YKRQYNQDISDLNQPVLISQYRRK--RG-NVTVGPVV--LIPELCYLTGLTEKMRNDFNM 408
Query: 416 MKSIASFTRVDPNQKLQAISKYINNVNNNKETSELLKGWGLTLNKSMETLNARILPVEKI 475
MK +A TR+ P Q+ + I K ++ + ++ + L+ WGL+ + S+ + R++ EKI
Sbjct: 409 MKDLAVHTRLSPEQRQREIGKLVDCMKKDECVQKELRDWGLSFDSSLLSFTGRVVQAEKI 468
Query: 476 YMGNNFVAPGSQEADWNRQVGTNPALTVVNFDQWVLIHIRRDQRNADNFLNCLNRNSNAI 535
N Q ADW+R+ P + D W+LI+ RR+ A+ L L + + ++
Sbjct: 469 LQAGNVFDYNPQFADWSRETRVAPLIHAKPLDNWLLIYTRRNYDAANMLLQNLFKVTPSM 528
Query: 536 GIRVKKPQVIALQEEQTLSYLTALK-SMRSDTQFVVIIFNAPRTDRYQAVKKYCCCERPI 594
GIR+ K +I + +++T +YL L+ S+ DT VV I ++ R D+Y A+KKY C + PI
Sbjct: 529 GIRMNKATMIEV-DDRTEAYLRVLQQSITPDTNIVVCILSSTRKDKYDAIKKYLCTDCPI 587
Query: 595 PSQVINSRTISREDKMKSIVMKIALQINCKLGGSLWSVQIPYDCAMVIGIDVYHEGVGSQ 654
PSQ + +RT+S+ +IV KIALQ+NCK+GG LWSV+IP M++GID YH+ + +
Sbjct: 588 PSQCVVARTLSKPQTALAIVTKIALQMNCKMGGELWSVEIPLKQLMIVGIDCYHDTLSGK 647
Query: 655 GQNIVGLVASTNKDFTTYYSQAVIQRRGQEITDSIAQPFKQALDRFIQANSVPPKQIFIF 714
Q+I G VAS N+ T ++S+ V+Q RGQEI D + + AL + + N P +I ++
Sbjct: 648 -QSIAGFVASLNEKMTRWFSRCVVQSRGQEIVDGLKACLQTALREWFKWNKYLPSRIIVY 706
Query: 715 RDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQLLSAG 774
RDGV DGQL+++ E+ Q+ + T+ Y P++T I+V+KR++T+ F G
Sbjct: 707 RDGVGDGQLNTLVNYEVPQFLDCLKTV-----GKDYNPRLTVIVVKKRVSTRFFAQAGGG 761
Query: 775 ERPNLANAPSGSVLDHTVTRKTLSDFFLVSQHVRQGTVTPSHYIVLRNDNNVKVDHLQRL 834
L N P G+V+D VTR DFF+VSQ VR G V P+HY V+ + + +K DH+QRL
Sbjct: 762 ----LKNPPPGTVVDIEVTRPEWYDFFIVSQAVRNGCVAPTHYNVVYDTSKLKPDHVQRL 817
Query: 835 SYKLCHLYYNWPGTIRVPAVCQYAHRIAYLTGMHLQRLPSDVLSDKLFYL 884
+YKLCH+YYNW G IRVPA CQYAH++A+L G + R P+ +LSD+L+YL
Sbjct: 818 TYKLCHMYYNWSGVIRVPAPCQYAHKLAFLVGQSIHREPNLLLSDRLYYL 867
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| UNIPROTKB|E1BXZ3 PIWIL1 "Piwi-like protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NH47 PIWIL1 "Piwi-like protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| MGI|MGI:1928897 Piwil1 "piwi-like RNA-mediated gene silencing 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|1306980 Piwil1 "piwi-like RNA-mediated gene silencing 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q96J94 PIWIL1 "Piwi-like protein 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RDI9 PIWIL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1RFQ4 PIWIL1 "Piwil1 protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BJC4 PIWIL1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E2RDH8 PIWIL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8UVX0 | PIWL1_DANRE | No assigned EC number | 0.3927 | 0.8495 | 0.8752 | yes | N/A |
| A8KBF3 | PIWL2_XENTR | No assigned EC number | 0.3691 | 0.8959 | 0.8345 | yes | N/A |
| A6N7Y9 | PIWL1_CHICK | No assigned EC number | 0.4 | 0.8472 | 0.8638 | yes | N/A |
| Q9JMB7 | PIWL1_MOUSE | No assigned EC number | 0.3935 | 0.8495 | 0.8712 | yes | N/A |
| Q96J94 | PIWL1_HUMAN | No assigned EC number | 0.3883 | 0.8495 | 0.8722 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 884 | |||
| cd04658 | 448 | cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: P | 1e-170 | |
| smart00950 | 301 | smart00950, Piwi, This domain is found in the prot | 8e-94 | |
| pfam02171 | 296 | pfam02171, Piwi, Piwi domain | 2e-83 | |
| cd04657 | 426 | cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain | 2e-72 | |
| cd02826 | 393 | cd02826, Piwi-like, Piwi-like: PIWI domain | 5e-66 | |
| smart00949 | 138 | smart00949, PAZ, This domain is named PAZ after th | 4e-43 | |
| cd02845 | 117 | cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subf | 7e-39 | |
| PLN03202 | 900 | PLN03202, PLN03202, protein argonaute; Provisional | 2e-29 | |
| pfam02170 | 114 | pfam02170, PAZ, PAZ domain | 3e-24 | |
| cd02825 | 115 | cd02825, PAZ, PAZ domain, named PAZ after the prot | 5e-08 | |
| cd04659 | 404 | cd04659, Piwi_piwi-like_ProArk, Piwi_piwi-like_Pro | 2e-07 | |
| cd02846 | 114 | cd02846, PAZ_argonaute_like, PAZ domain, argonaute | 3e-05 | |
| cd02844 | 135 | cd02844, PAZ_CAF_like, PAZ domain, CAF_like subfam | 9e-05 |
| >gnl|CDD|240016 cd04658, Piwi_piwi-like_Euk, Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes | Back alignment and domain information |
|---|
Score = 501 bits (1291), Expect = e-170
Identities = 205/459 (44%), Positives = 293/459 (63%), Gaps = 16/459 (3%)
Query: 414 QVMKSIASFTRVDPNQKLQAISKYINNVNNNKETSELLKGWGLTLNKSMETLNARILPVE 473
+MK +A T+++P ++ I ++I + N ELLK WG+ L+ + + R+LP E
Sbjct: 1 NLMKELAEHTKLNPKERYDTIRQFIQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPE 60
Query: 474 KIYMGNNFVAPGSQEADWNRQVGTNPALTVVNFDQWVLIHIRRDQRNADNFLNCLNRNSN 533
+I MGN FV + ADW R++ P VN + WVLI+ RDQR A++FL L + +
Sbjct: 61 QIIMGNVFV-YANSNADWKREIRNQPLYDAVNLNNWVLIYPSRDQREAESFLQTLKQVAG 119
Query: 534 AIGIRVKKPQVIALQEEQTLSYLTALK-SMRSDTQFVVIIFNAPRTDRYQAVKKYCCCER 592
+GI++ P++I +++++ +Y+ ALK + RSD Q VVII + D Y A+KK+CC E
Sbjct: 120 PMGIQISPPKIIKVKDDRIETYIRALKDAFRSDPQLVVIILPGNKKDLYDAIKKFCCVEC 179
Query: 593 PIPSQVINSRTISREDKMKSIVMKIALQINCKLGGSLWSVQIPY---DCAMVIGIDVYHE 649
P+PSQVI SRT+ ++ ++SI KIALQIN KLGG W+V+IP M++GIDVYH+
Sbjct: 180 PVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIPPFILKNTMIVGIDVYHD 239
Query: 650 GVGSQGQNIVGLVASTNKDFTTYYSQAVIQRRGQE-ITDSIAQPFKQALDRFIQANSVPP 708
+ + +VG VAS NK T ++S+ + Q RGQE I DS+ + K+AL + + N P
Sbjct: 240 TITKKKS-VVGFVASLNKSITKWFSKYISQVRGQEEIIDSLGKSMKKALKAYKKENKKLP 298
Query: 709 KQIFIFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIF 768
+I I+RDGV DGQL V E+ Q ++ + S +Y+PK+ I+V KRINT+ F
Sbjct: 299 SRIIIYRDGVGDGQLKKVKEYEVPQIKKAIKQY-----SENYSPKLAYIVVNKRINTRFF 353
Query: 769 QLLSAGERPNLANAPSGSVLDHTVTRKTLSDFFLVSQHVRQGTVTPSHYIVLRNDNNVKV 828
N +N P G+V+D +T+ DFFLVSQ VRQGTVTP+HY VL + +K
Sbjct: 354 N----QGGNNFSNPPPGTVVDSEITKPEWYDFFLVSQSVRQGTVTPTHYNVLYDTTGLKP 409
Query: 829 DHLQRLSYKLCHLYYNWPGTIRVPAVCQYAHRIAYLTGM 867
DHLQRL+YKLCHLYYNW G+IRVPA CQYAH++A+L G
Sbjct: 410 DHLQRLTYKLCHLYYNWSGSIRVPAPCQYAHKLAFLVGQ 448
|
This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. Length = 448 |
| >gnl|CDD|214930 smart00950, Piwi, This domain is found in the protein Piwi and its relatives | Back alignment and domain information |
|---|
| >gnl|CDD|216915 pfam02171, Piwi, Piwi domain | Back alignment and domain information |
|---|
| >gnl|CDD|240015 cd04657, Piwi_ago-like, Piwi_ago-like: PIWI domain, Argonaute-like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|239208 cd02826, Piwi-like, Piwi-like: PIWI domain | Back alignment and domain information |
|---|
| >gnl|CDD|198017 smart00949, PAZ, This domain is named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >gnl|CDD|239211 cd02845, PAZ_piwi_like, PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|215631 PLN03202, PLN03202, protein argonaute; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216914 pfam02170, PAZ, PAZ domain | Back alignment and domain information |
|---|
| >gnl|CDD|239207 cd02825, PAZ, PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >gnl|CDD|240017 cd04659, Piwi_piwi-like_ProArk, Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria | Back alignment and domain information |
|---|
| >gnl|CDD|239212 cd02846, PAZ_argonaute_like, PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
| >gnl|CDD|239210 cd02844, PAZ_CAF_like, PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 884 | |||
| KOG1042|consensus | 845 | 100.0 | ||
| PLN03202 | 900 | protein argonaute; Provisional | 100.0 | |
| KOG1041|consensus | 876 | 100.0 | ||
| cd04658 | 448 | Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain | 100.0 | |
| cd04657 | 426 | Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaut | 100.0 | |
| cd02826 | 393 | Piwi-like Piwi-like: PIWI domain. Domain found in | 100.0 | |
| PF02171 | 302 | Piwi: Piwi domain; InterPro: IPR003165 This domain | 100.0 | |
| cd04659 | 404 | Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI | 100.0 | |
| cd02845 | 117 | PAZ_piwi_like PAZ domain, Piwi_like subfamily. In | 99.91 | |
| PF02170 | 135 | PAZ: PAZ domain; InterPro: IPR003100 This domain i | 99.78 | |
| cd02825 | 115 | PAZ PAZ domain, named PAZ after the proteins Piwi | 99.73 | |
| cd02844 | 135 | PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF ( | 99.65 | |
| cd02846 | 114 | PAZ_argonaute_like PAZ domain, argonaute_like subf | 99.61 | |
| COG1431 | 685 | Argonaute homolog, implicated in RNA metabolism [T | 99.57 | |
| cd02843 | 122 | PAZ_dicer_like PAZ domain, dicer_like subfamily. D | 99.34 | |
| PF08699 | 52 | DUF1785: Domain of unknown function (DUF1785); Int | 99.06 | |
| PF13032 | 138 | DUF3893: Domain of unknown function (DUF3893) | 89.71 | |
| PF08459 | 155 | UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; I | 87.49 |
| >KOG1042|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-210 Score=1718.30 Aligned_cols=755 Identities=39% Similarity=0.726 Sum_probs=727.9
Q ss_pred ecccCCCceEEEEEeeeeeeecCCceeEEEeeeCCCCCchhhhhhHHhhHHhhhcccccccccceeeeeeeccccccccc
Q psy11920 118 FRGELGQPIKVMVNYIDLSVKEGSGMYEYEVKFNPPIDSRGIRNRLINSLNDLLGQYKTFDGMNLFLPFKLSSDTVNTTC 197 (884)
Q Consensus 118 ~~Gt~G~~v~l~tN~f~l~~~~~~~iy~Y~V~~~P~~~~~~~r~~ll~~~~~~~g~~~~fDG~~L~s~~~L~~~~~~~~~ 197 (884)
|+|++|.||+|.||||++..+|+|.||||||+|+|+++++++|.++|++|.+++|+.++|||.+||++++++++.+++++
T Consensus 87 KtGssG~pv~l~tN~f~l~t~p~w~iyqYhVef~P~ves~rlR~~~L~~h~~lig~~~~FDG~iLfl~~k~eq~~tel~~ 166 (845)
T KOG1042|consen 87 KTGSSGIPVKLQTNFFRLMTRPDWSIYQYHVEFEPDVESRRLREALLYNHTDLIGKGYAFDGTILFLKEKFEQKQTELVS 166 (845)
T ss_pred ccCCCCceEEEEeceeeeccCCCcEEEEEEEeeccccccHHHHHHHHHHhHhhhccceeecceeehhhHHHhhhhheeec
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCc--eEEEEEEehhHHHHhhhhHHHHHHHHHHHHHhhhcccccccCCCccccccccceeecCcceeeeecccCce
Q psy11920 198 QTREGSD--VQITIIFKRQRQFYENLMFYNILFRKIAFLLSMVQFKDCLYDPRSKLLIPQYKLEVWPGFVTAIDEYEGGL 275 (884)
Q Consensus 198 ~~~~g~~--i~i~~~~~~~~~~~~~iq~lNii~r~~l~~l~~~~iGR~ff~~~~~~~i~~~~leiw~Gf~~Sir~~e~~l 275 (884)
++++|+. |+|+++++++.+||+|||+||+|||+.|+.|++.+||||||+|.++++|++|++++||||.+||+++|..+
T Consensus 167 ks~~ge~i~I~ik~~~~~~~t~p~~iqv~NlI~RR~~k~L~L~qigRnyynp~~~i~ip~~km~lwPGy~tSIrq~E~~i 246 (845)
T KOG1042|consen 167 KSRDGELIKITIKLTNELPSTDPQCIQVFNLILRRSMKGLNLTQIGRNYYDPRAKIEIPEFKMSLWPGYETSIRQHENDI 246 (845)
T ss_pred ccCCCceEEEEEEEeccccCCChhHHHHHHHHHHHHHhhccHHHhhhccCCCCcccccccccceecCcchhHHHHhhhce
Confidence 9999987 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeccceeeecchhhhHHHHHHHhhcCcHHHHHHHhhhheeEEEeecCceeeeeccccccCccccccccCCCcchhhh
Q psy11920 276 KLQIDTSCRVLRTSTCLDLIDELKEKFGGNFMERLSQALIGEIVLTRYNNQTYRIDEIDFKQTPMSTFTKRGEPKSYVDY 355 (884)
Q Consensus 276 ~L~iDvs~k~~r~~tvld~~~~~~~~~~~~~~~~~~k~L~Gl~V~t~ynnktyrI~~I~~~~~p~~tF~~~dG~iSv~dY 355 (884)
+||.|++|||+|++|++|+|.++.++ +.+|++++++++.|++|+|+||||||||+||||+.+|.+||.++||+|||+||
T Consensus 247 llctei~hKvmR~ETvy~~m~~~~~~-~~~~qe~~~~~~~glivLT~YNNktyriddvD~~~tP~stF~k~dgeIs~veY 325 (845)
T KOG1042|consen 247 LLCTEISHKVMRTETVYDIMRSCQHN-TQRFQETVNKNVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKDDGEISFVEY 325 (845)
T ss_pred eeehhhhhhHhhhhHHHHHHHHHhhC-HHHHHHHHHHHhcceEEEEecCCceeeeeccccCcCccceeeecCceeeHhHH
Confidence 99999999999999999999998765 34599999999999999999999999999999999999999999989999999
Q ss_pred hhhhcceeeccCCCceeEEeeecccccCcCcccceehhhhhhhhhHhhcchHHhhhhHHHHhhhccccccCCchhHHHHH
Q psy11920 356 YREAYNIEIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFLTGLSDAMRNDFQVMKSIASFTRVDPNQKLQAIS 435 (884)
Q Consensus 356 yk~~Yni~i~~~~qPllv~~~k~~~~~~~~~~~~~~~~~lppELC~itgLtd~~r~d~~~mk~l~~~t~~~P~~R~~~i~ 435 (884)
|+++|||+|+|.+||+|+|++|.+.+.|+. + +.++|+||||++|||||+||+||++||++++||+++|++|++++.
T Consensus 326 yk~qYni~I~dl~QPlliS~~k~K~~~g~~-~---q~~~lIPELc~~TGLtd~mr~dF~~Mkama~hTRlsP~qR~~rlr 401 (845)
T KOG1042|consen 326 YKKQYNIEITDLNQPLLISEPKDKRPKGEP-P---QLAMLIPELCFLTGLTDEMRSDFQLMKAMAEHTRLSPQQRQDRLR 401 (845)
T ss_pred HHHhcCeEEeeCCcceEeccCcccCCCCCC-c---cceeeehhhhhccCCcHHHHhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999988654443 4 899999999999999999999999999999999999999999999
Q ss_pred HhhhccCCchhhhhhhhccccccccchhhhcceeeeeeeEeccCccccCCCcccccccccCCCCceEEEecccEEEEEEe
Q psy11920 436 KYINNVNNNKETSELLKGWGLTLNKSMETLNARILPVEKIYMGNNFVAPGSQEADWNRQVGTNPALTVVNFDQWVLIHIR 515 (884)
Q Consensus 436 ~~~~~l~~~~~~~~~L~~~Gl~i~~~~~~v~grvLp~p~I~~g~~~~~~~~~~g~W~~~~r~~~~~~~~~l~~W~vv~~~ 515 (884)
.|+++|+.++++.+.|+.|||++++++++|+||+||+++|.++++++.+.+..|||++++|.+++++..++++|+||++.
T Consensus 402 ~li~~l~~n~~~~~~lr~Wgi~ld~~l~~v~gRil~sEkI~~~~~~~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~ 481 (845)
T KOG1042|consen 402 RLIDRLQKNPNSVEELRDWGISLDSNLAEVQGRILPSEKILFGNQKVPYEGKQADWSREFRTCGILRGSNLDNWAVIYPG 481 (845)
T ss_pred HHHHHHhcChHHHHHHHhcCcccCcchhhccceecCccceecCCcccCCCcchhhhhhhcccccccccCCCcceEEEecC
Confidence 99999999999999999999999999999999999999999999998777888999999999999999999999999999
Q ss_pred cccccchhhhhhcccCCceeeeeeeCceEEEeccchhhhHHHHhh-hcccCceEEEEEecCCCchhHHhhhhhccccCCC
Q psy11920 516 RDQRNADNFLNCLNRNSNAIGIRVKKPQVIALQEEQTLSYLTALK-SMRSDTQFVVIIFNAPRTDRYQAVKKYCCCERPI 594 (884)
Q Consensus 516 ~~~~~~~~f~~~L~~~~~~~Gi~i~~P~~~~~~~~~~~~~~~~l~-~~~~~~~lvl~Ilp~~~~~~Y~~IK~~~~~~~gI 594 (884)
|+..++++|+++|.+++..|||+|.+|.++++.++++++|+++|+ .++.++|||+||+|+++++.|+.|||++|++++|
T Consensus 482 r~~~~a~~fi~~l~r~a~~mgm~i~~P~~v~i~ddr~~tYvraiqq~v~~D~qmvvcil~~~nk~~Y~sIKK~~cvd~pv 561 (845)
T KOG1042|consen 482 RNNSEAQEFINMLRRVASSMGMQIREPICVEIKDDRPGTYVRAIQQVVGADIQMVVCILPSDNKTRYDSIKKYLCVDCPV 561 (845)
T ss_pred ccHHHHHHHHHHHHHhccccceecCCceEEEeCCCChHHHHHHHHHhccCCceEEEEEecCCchhhHHHHHhheeccCCC
Confidence 999999999999999999999999999999999999999999999 8889999999999999999999999999999999
Q ss_pred cccccccccccchhhhhhHHhhhhhhcccccCcceeEEeeccceeEEEeeeeeecccCCCCCceEEEEecccCCchhhhh
Q psy11920 595 PSQVINSRTISREDKMKSIVMKIALQINCKLGGSLWSVQIPYDCAMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTTYYS 674 (884)
Q Consensus 595 ~SQ~i~~~tl~k~~~~~~~~~nI~lkiN~KLGG~~w~v~~p~~~tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~t~y~s 674 (884)
|||||+.+|+.+.+.++++++|||+||||||||++|.|++|++.+||||+||+|++..++ .|++|||||+|.++|+|||
T Consensus 562 PsQ~V~lrTl~~~~~lmSIAtKI~lQmnCKlGg~lW~V~IPLk~lMiVG~Dv~hd~~~k~-rsvga~VAs~n~~~tr~fS 640 (845)
T KOG1042|consen 562 PSQCVNLRTLAKRSKLMSIATKIALQMNCKLGGELWKVEIPLKGLMIVGFDVYHDPTLKG-RSVGAFVASMNNDFTRWFS 640 (845)
T ss_pred ccceEEEEeecCcchhHHHHHHHHHHHhhhhcCcceEEeeecccceEEEEEeecCccccC-ceEEEEEEeeccchhhhhh
Confidence 999999999998888999999999999999999999999999999999999999998887 9999999999999999999
Q ss_pred HHHHHhcccchhhhhhhHHHHHHHHhhhcCCCCCceEEEeeccCCCCcccccceeehhhhHHHHHHHHhc-CCCCCCCcc
Q psy11920 675 QAVIQRRGQEITDSIAQPFKQALDRFIQANSVPPKQIFIFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTT-LPSCSYAPK 753 (884)
Q Consensus 675 ~~~~Q~~~~ei~~~l~~~~~~aL~~f~~~n~~lP~~IIiYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~-~~~~~~~pk 753 (884)
+|.+|..++|+.+.|+.||..||++|++.|..+|+|||||||||||||++++.++||+.+.+.+.+.|.+ +. +++|+
T Consensus 641 ~v~~~~~~qel~d~L~~~~~~ALr~y~~~n~~LPsRIi~YRDGVgDGQLk~l~n~EV~~~~dql~~~~a~~~~--~~~~r 718 (845)
T KOG1042|consen 641 RVIEQENGQELADNLKVFLAKALRQYYEVNRTLPSRIIVYRDGVGDGQLKTLVNYEVPLVCDQLLDCYAELSN--KEKPR 718 (845)
T ss_pred heecccCHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEecCCCCcccceeeeeccchHHHHHHHHHHHhcC--CCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999555555544432 33 58999
Q ss_pred eeEEeeeeecchhhhhhhccCCCCCCCCCCCCceeeeeecccccceEEEEeecccccccccceeEEEeccCCCCccchhh
Q psy11920 754 ITAIIVQKRINTKIFQLLSAGERPNLANAPSGSVLDHTVTRKTLSDFFLVSQHVRQGTVTPSHYIVLRNDNNVKVDHLQR 833 (884)
Q Consensus 754 lt~IvV~Krh~~Rff~~~~~~~~~~~~NpppGTVVD~~it~p~~~dFyLvSq~~~qGT~rPthY~Vl~d~~~l~~d~lq~ 833 (884)
++||||+||+|+|||. +...+.+||+||||||++||+|+||||||+||+++|||+.||||+||||+++|+||++|+
T Consensus 719 l~~iVV~KrvntR~f~----~~~~~~~NP~PGTVVD~~iT~pEryDFyLvsQ~VrqGtvsPTsYnvi~d~~gL~PDkmQr 794 (845)
T KOG1042|consen 719 LAVIVVTKRVNTRFFL----QGSSNAQNPPPGTVVDDTITRPERYDFYLVSQAVRQGTVSPTSYNVIYDDMGLSPDKMQR 794 (845)
T ss_pred EEEEEEEeeccHHHHh----hCCccccCCCCCceecceecccceeeeEeehhhhhcCCcCCceEEEEecCCCCCHHHHHH
Confidence 9999999999999999 566789999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhheeeccCCceeeeCcchhhhHHHHHhhccccCCCCchhhhhccccC
Q psy11920 834 LSYKLCHLYYNWPGTIRVPAVCQYAHRIAYLTGMHLQRLPSDVLSDKLFYL 884 (884)
Q Consensus 834 LTy~LC~ly~~~~~~isvPaP~~YAhklA~~vg~~i~~~p~~~L~~~lfyL 884 (884)
|||+||||||||+|+|||||||+||||||||+||+||.+|+..|+|+||||
T Consensus 795 LtfKlCHlYyNW~GtiRVPApCqYAHKLAfLv~qslH~ep~~~L~n~LffL 845 (845)
T KOG1042|consen 795 LTFKLCHLYYNWPGTIRVPAPCQYAHKLAFLVAQSLHREPNLQLRNKLFFL 845 (845)
T ss_pred HHHHHhheeecCCcceeccchhHHHHHHHHHHHhhhhhchhhhHhhhhccC
Confidence 999999999999999999999999999999999999999999999999998
|
|
| >PLN03202 protein argonaute; Provisional | Back alignment and domain information |
|---|
| >KOG1041|consensus | Back alignment and domain information |
|---|
| >cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes | Back alignment and domain information |
|---|
| >cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily | Back alignment and domain information |
|---|
| >cd02826 Piwi-like Piwi-like: PIWI domain | Back alignment and domain information |
|---|
| >PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster [] | Back alignment and domain information |
|---|
| >cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria | Back alignment and domain information |
|---|
| >cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily | Back alignment and domain information |
|---|
| >PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille | Back alignment and domain information |
|---|
| >cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily | Back alignment and domain information |
|---|
| >cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily | Back alignment and domain information |
|---|
| >COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily | Back alignment and domain information |
|---|
| >PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO | Back alignment and domain information |
|---|
| >PF13032 DUF3893: Domain of unknown function (DUF3893) | Back alignment and domain information |
|---|
| >PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products [] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 884 | ||||
| 4f3t_A | 861 | Human Argonaute-2 - Mir-20a Complex Length = 861 | 7e-37 | ||
| 4ei1_A | 859 | Crystal Structure Of Human Argonaute2 Length = 859 | 8e-37 | ||
| 2xfm_A | 150 | Complex Structure Of The Miwi Paz Domain Bound To M | 2e-29 | ||
| 2l5c_A | 134 | Solution Structures Of Human Piwi-Like 1 Paz Domain | 4e-25 | ||
| 3o6e_X | 124 | Crystal Structure Of Human Hiwi1 Paz Domain (Residu | 7e-23 | ||
| 3o3i_X | 124 | Crystal Structure Of Human Hiwi1 Paz Domain (Residu | 7e-23 | ||
| 3o7v_X | 124 | Crystal Structure Of Human Hiwi1 (V361m) Paz Domain | 1e-22 | ||
| 3qir_A | 148 | Crystal Structure Of Piwil2 Paz Domain Length = 148 | 1e-21 | ||
| 2yhb_A | 437 | Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi | 6e-21 | ||
| 3o7x_A | 140 | Crystal Structure Of Human Hili Paz Domain Length = | 3e-20 | ||
| 4f1n_A | 1046 | Crystal Structure Of Kluyveromyces Polysporus Argon | 4e-17 | ||
| 2yha_A | 388 | Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Pi | 2e-10 | ||
| 2ffl_A | 756 | Crystal Structure Of Dicer From Giardia Intestinali | 2e-04 |
| >pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex Length = 861 | Back alignment and structure |
|
| >pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2 Length = 859 | Back alignment and structure |
| >pdb|2XFM|A Chain A, Complex Structure Of The Miwi Paz Domain Bound To Methylated Single Stranded Rna Length = 150 | Back alignment and structure |
| >pdb|2L5C|A Chain A, Solution Structures Of Human Piwi-Like 1 Paz Domain Length = 134 | Back alignment and structure |
| >pdb|3O6E|X Chain X, Crystal Structure Of Human Hiwi1 Paz Domain (Residues 277-399) In Complex With 14-Mer Rna (12-Bp + 2-Nt Overhang) Containing 2'-Och3 At Its 3'-End Length = 124 | Back alignment and structure |
| >pdb|3O3I|X Chain X, Crystal Structure Of Human Hiwi1 Paz Domain (Residues 277-399) In Complex With 14-Mer Rna (12-Bp + 2-Nt Overhang) Containing 2'-Oh At Its 3'-End Length = 124 | Back alignment and structure |
| >pdb|3O7V|X Chain X, Crystal Structure Of Human Hiwi1 (V361m) Paz Domain (Residues 277-399) In Complex With 14-Mer Rna (12-Bp + 2-Nt Overhang) Containing 2'-Och3 At Its 3'-End Length = 124 | Back alignment and structure |
| >pdb|3QIR|A Chain A, Crystal Structure Of Piwil2 Paz Domain Length = 148 | Back alignment and structure |
| >pdb|2YHB|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 437 | Back alignment and structure |
| >pdb|3O7X|A Chain A, Crystal Structure Of Human Hili Paz Domain Length = 140 | Back alignment and structure |
| >pdb|4F1N|A Chain A, Crystal Structure Of Kluyveromyces Polysporus Argonaute With A Guide Rna Length = 1046 | Back alignment and structure |
| >pdb|2YHA|A Chain A, Crystal Structure Of The N. Crassa Qde-2 Ago Mid-Piwi Domains Length = 388 | Back alignment and structure |
| >pdb|2FFL|A Chain A, Crystal Structure Of Dicer From Giardia Intestinalis Length = 756 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A Length = 861 | Back alignment and structure |
|---|
Score = 496 bits (1279), Expect = e-163
Identities = 171/851 (20%), Positives = 308/851 (36%), Gaps = 88/851 (10%)
Query: 90 GDAPSSPPTQQMKALSISKSKPPSEPVYFRGELGQPIKVMVNYIDLSVKEGSGMYEYEVK 149
G P+ P + KPP P + G G+ IK+ N+ ++ + + +Y YE+
Sbjct: 6 GAGPALAPPAPPPPIQGYAFKPPPRPDF--GTSGRTIKLQANFFEMDIPKID-IYHYELD 62
Query: 150 FNPPIDSRGIRNRLINSLNDLL------GQYKTFDGMNLF-----LPFKLSSDTVNTTCQ 198
P R + ++ + + FDG LP + T
Sbjct: 63 IKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYTAMPLPIGRDKVELEVT-L 121
Query: 199 TREGSDVQITIIFKRQRQF-----------------YENLMFYNILFRKIAFLLSMVQFK 241
EG D + K +E + +++ R + +
Sbjct: 122 PGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRHLPSM-RYTPVG 180
Query: 242 DCLYDPRSKLLIP-QYKLEVWPGFVTAIDEYEGGLKLQIDTSCRV-LRTSTCLDLIDELK 299
+ P EVW GF ++ + L ID S + ++ + E+
Sbjct: 181 RSFFTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVL 240
Query: 300 EKFG---------GNFMERLSQALIGEIVLTRYN---NQTYRIDEIDFKQTPMSTFTKR- 346
+ + + ++ + G V + + YR+ + + TF +
Sbjct: 241 DFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQ 300
Query: 347 ----GEPKSYVDYYREAYNIEIRDKSQPMLITRVKRKTRRGTNVEESHYIAAIVPELAFL 402
+ Y+++ + + +R P L ++K + IV +
Sbjct: 301 ESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQEQKHTYL-----PLEVCNIVAGQRCI 355
Query: 403 TGLSDAMRNDFQVMKSIASFTRVDPNQKLQAISKYINNVNNNKETSELLKGWGLTLNKSM 462
L D Q I T + + ISK + + + N + ++ +G+ + M
Sbjct: 356 KKL-----TDNQTSTMIR-ATARSAPDRQEEISKLMRSASFNTD--PYVREFGIMVKDEM 407
Query: 463 ETLNARILPVEKIYMGNNFVAPGSQEADWNRQVGTNPALTVVNFDQWVLIHI----RRDQ 518
+ R+L I G A + + T + W + + +
Sbjct: 408 TDVTGRVLQPPSILYGGRNKAIATP-VQGVWDMRNKQFHTGIEIKVWAIACFAPQRQCTE 466
Query: 519 RNADNFLNCLNRNSNAIGIRVKKPQVIALQE---EQTLSYLTALKSMRSDTQFVVIIFNA 575
+ +F L + S G+ ++ + LK+ + Q VV+I
Sbjct: 467 VHLKSFTEQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILP- 525
Query: 576 PRTDRYQAVKKYCCCERPIPSQVINSRTISREDKMKSIVMKIALQINCKLGGSLWSVQIP 635
+T Y VK+ + +Q + + + R + + L+IN KLGG +
Sbjct: 526 GKTPVYAEVKRVGDTVLGMATQCVQMKNVQR--TTPQTLSNLCLKINVKLGGVNNILLPQ 583
Query: 636 YDC------AMVIGIDVYHEGVGS-QGQNIVGLVASTNKDFTTYYSQAVIQRRGQEITDS 688
+ +G DV H G + +I +V S + Y + +Q+ QEI
Sbjct: 584 GRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQEIIQD 643
Query: 689 IAQPFKQALDRFIQANSVPPKQIFIFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSC 748
+A ++ L +F ++ P +I +RDGVS+GQ V E+ ++ +
Sbjct: 644 LAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKL-----EK 698
Query: 749 SYAPKITAIIVQKRINTKIFQLLSAGERPNLANAPSGSVLDHTVTRKTLSDFFLVSQHVR 808
Y P IT I+VQKR +T++F N P+G+ +D +T T DF+L S
Sbjct: 699 DYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGI 758
Query: 809 QGTVTPSHYIVLRNDNNVKVDHLQRLSYKLCHLYYNWPGTIRVPAVCQYAHRIAYLTGMH 868
QGT PSHY VL +DN D LQ L+Y+LCH Y ++ +PA YAH +A+ H
Sbjct: 759 QGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYH 818
Query: 869 LQRLPSDVLSD 879
L D
Sbjct: 819 LVDKEHDSAEG 829
|
| >3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A Length = 685 | Back alignment and structure |
|---|
| >1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A Length = 771 | Back alignment and structure |
|---|
| >1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A Length = 706 | Back alignment and structure |
|---|
| >4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} Length = 1046 | Back alignment and structure |
|---|
| >2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} Length = 437 | Back alignment and structure |
|---|
| >2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A Length = 427 | Back alignment and structure |
|---|
| >2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A Length = 388 | Back alignment and structure |
|---|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A Length = 148 | Back alignment and structure |
|---|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} Length = 150 | Back alignment and structure |
|---|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* Length = 124 | Back alignment and structure |
|---|
| >4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} Length = 139 | Back alignment and structure |
|---|
| >4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* Length = 147 | Back alignment and structure |
|---|
| >3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* Length = 138 | Back alignment and structure |
|---|
| >4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} Length = 150 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 884 | |||
| 4f3t_A | 861 | Protein argonaute-2; hydrolase/gene regulation, RN | 100.0 | |
| 4f1n_A | 1046 | Kpago; argonaute, RNAI, RNAse H, RNA binding prote | 100.0 | |
| 1u04_A | 771 | Argonaute, hypothetical protein PF0537; RNAI, sile | 100.0 | |
| 1yvu_A | 706 | Hypothetical protein AQ_1447; RNAse H fold, RNA bi | 100.0 | |
| 3ho1_A | 685 | Argonaute; argonaute, protein-DNA-RNA complex, nuc | 100.0 | |
| 2yhb_A | 437 | QDE-2, post-transcriptional gene silencing protein | 100.0 | |
| 2yha_A | 388 | Post-transcriptional gene silencing protein QDE-2; | 100.0 | |
| 2w42_A | 427 | PIWI, putative uncharacterized protein; RNAI, RISC | 100.0 | |
| 3qir_A | 148 | PIWI-like protein 2; structural genomics consortiu | 100.0 | |
| 2xfm_A | 150 | MIWI, PIWI-like protein 1; RNA-protein complex, di | 99.98 | |
| 3o7v_X | 124 | PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, | 99.96 | |
| 4g0x_A | 147 | Protein argonaute 1; MID domain, small RNA 5' nucl | 99.9 | |
| 4g0o_A | 139 | Protein argonaute 5; MID domain, small RNA 5' nucl | 99.9 | |
| 4g0m_A | 150 | Protein argonaute 2; MID domain, small RNA 5' nucl | 99.89 | |
| 3luc_A | 138 | Protein argonaute-2; MID domain, ribonucleoprotein | 99.88 | |
| 1vyn_A | 143 | Argonaute2; nucleic acid binding, RNA interference | 99.77 | |
| 3mj0_A | 124 | Protein argonaute-2; argonaut, PAZ domain, 3'-END | 99.73 | |
| 2qvw_A | 756 | GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral | 99.44 | |
| 1r6z_P | 509 | Chimera of maltose-binding periplasmic protein AN | 99.17 |
| >4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-153 Score=1406.64 Aligned_cols=741 Identities=22% Similarity=0.366 Sum_probs=634.3
Q ss_pred CCCCeeecccCCCceEEEEEeeeeeeecCCceeEEEeeeCCCCCchhhhhhHHhhHH-----hhhccc-ccccc-cceee
Q psy11920 112 PSEPVYFRGELGQPIKVMVNYIDLSVKEGSGMYEYEVKFNPPIDSRGIRNRLINSLN-----DLLGQY-KTFDG-MNLFL 184 (884)
Q Consensus 112 ~~~~~~~~Gt~G~~v~l~tN~f~l~~~~~~~iy~Y~V~~~P~~~~~~~r~~ll~~~~-----~~~g~~-~~fDG-~~L~s 184 (884)
...+++++||.|++|.|.||||+|++ +++.+|||||+|+|+.+++++++++++.+. ++||.. ++||| ++||+
T Consensus 26 ~~p~RPg~Gt~G~~i~l~aN~F~v~~-~~~~ly~Y~V~i~p~~~~~~~~r~i~~~l~~~~~~~~~~~~~~afDG~~~l~s 104 (861)
T 4f3t_A 26 KPPPRPDFGTSGRTIKLQANFFEMDI-PKIDIYHYELDIKPEKCPRRVNREIVEHMVQHFKTQIFGDRKPVFDGRKNLYT 104 (861)
T ss_dssp CCCBCCCCCCCSEEEEEEESEEEEEC-CSCEEEEEEEEEESCSCCHHHHHHHHHHHHHHSCCCCCTTCCCEECSSSEEEE
T ss_pred cCCCCCCCCCCCcEEEEEeeeEEEEC-CCCceeeeeEEeCCCcCcHHHHHHHHHHHHHHhhhhhhcCceEEEcCcceEEE
Confidence 34455689999999999999999998 678999999999999999999998887442 346543 59999 78999
Q ss_pred eeeeccc--ccccccc-cccC--Cc--eEEEEEEehhHH-------------HHhhhhHHHHHHHHHHHHHhhhcccccc
Q psy11920 185 PFKLSSD--TVNTTCQ-TREG--SD--VQITIIFKRQRQ-------------FYENLMFYNILFRKIAFLLSMVQFKDCL 244 (884)
Q Consensus 185 ~~~L~~~--~~~~~~~-~~~g--~~--i~i~~~~~~~~~-------------~~~~iq~lNii~r~~l~~l~~~~iGR~f 244 (884)
+.+|+.+ ..++... ..++ +. |+|+++++++.. .+++||+||||||+ +..+++.++||+|
T Consensus 105 ~~~L~~~~~~~~~~v~~~~~~~~~~~~V~I~~~~~i~l~~L~~~l~g~~~~~~~~~iq~Lniilr~-~~~~~~~~vGR~F 183 (861)
T 4f3t_A 105 AMPLPIGRDKVELEVTLPGEGKDRIFKVSIKWVSCVSLQALHDALSGRLPSVPFETIQALDVVMRH-LPSMRYTPVGRSF 183 (861)
T ss_dssp SSCCSCSSCEEEEECCC-------CEEEEEEEEEEEEHHHHHHHHHTCSSSCCHHHHHHHHHHHHH-HHHHHSEEETTEE
T ss_pred CCcCCCCCcceEEEEecCCCCCCcEEEEEEEEeeecCHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-hccccccccCCCc
Confidence 9999853 2333221 1122 23 999999999864 36899999999999 6778999999999
Q ss_pred cCCCcccccc-ccceeecCcceeeeecccCceeEEeecccee-eecchhhhHHHHHHHhh---------cCcHHHHHHHh
Q psy11920 245 YDPRSKLLIP-QYKLEVWPGFVTAIDEYEGGLKLQIDTSCRV-LRTSTCLDLIDELKEKF---------GGNFMERLSQA 313 (884)
Q Consensus 245 f~~~~~~~i~-~~~leiw~Gf~~Sir~~e~~l~L~iDvs~k~-~r~~tvld~~~~~~~~~---------~~~~~~~~~k~ 313 (884)
|++..+..++ ++|+|+|+||++|||+++++++||+|++|++ ++++||+|+|.++++.. ...+++++.++
T Consensus 184 f~~~~~~~~~lg~Gle~w~G~~~Svr~~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 263 (861)
T 4f3t_A 184 FTASEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKE 263 (861)
T ss_dssp ECCC---CCEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCCCHHHHHHHHHH
T ss_pred cCCCCCceeccCCCEEEEeceeEEEEecCCccEEeecccceeEeeCCcHHHHHHHHhcccchhhhccccCHHHHHHHHHH
Confidence 9987665444 5799999999999999999999999999995 68999999999887531 12356789999
Q ss_pred hhheeEEEee---cCceeeeeccccccCccccccc--cCC--C-cchhhhhhhhcceeeccCCCceeEEeeecccccCcC
Q psy11920 314 LIGEIVLTRY---NNQTYRIDEIDFKQTPMSTFTK--RGE--P-KSYVDYYREAYNIEIRDKSQPMLITRVKRKTRRGTN 385 (884)
Q Consensus 314 L~Gl~V~t~y---nnktyrI~~I~~~~~p~~tF~~--~dG--~-iSv~dYyk~~Yni~i~~~~qPllv~~~k~~~~~~~~ 385 (884)
|+|++|.|.| +||+|+|+||++..+.+.+|.+ ++| . |||+|||+++||++|+||+||||++..+
T Consensus 264 LkGl~V~~t~~~~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~g~~-------- 335 (861)
T 4f3t_A 264 IKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVGQE-------- 335 (861)
T ss_dssp HTTCEEEESCC---CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEESCT--------
T ss_pred hCCcEEEEeecCCCCceEEEeeCCCCCCCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCCceEEecCC--------
Confidence 9999998877 5799999999998888888964 345 3 9999999999999999999999976422
Q ss_pred cccceehhhhhhhhhHhh-------cchHHhhhhHHHHhhhccccccCCchhHHHHHHhhhccCCchhhhhhhhcccccc
Q psy11920 386 VEESHYIAAIVPELAFLT-------GLSDAMRNDFQVMKSIASFTRVDPNQKLQAISKYINNVNNNKETSELLKGWGLTL 458 (884)
Q Consensus 386 ~~~~~~~~~lppELC~it-------gLtd~~r~d~~~mk~l~~~t~~~P~~R~~~i~~~~~~l~~~~~~~~~L~~~Gl~i 458 (884)
. +++|||||||.++ +|+++|++| |++.++..|++|.+.|.++++.++.+. .++|+.|||+|
T Consensus 336 -~---~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~------mik~~~~~P~~R~~~I~~~~~~l~~~~--~~~l~~fGi~i 403 (861)
T 4f3t_A 336 -Q---KHTYLPLEVCNIVAGQRCIKKLTDNQTST------MIRATARSAPDRQEEISKLMRSASFNT--DPYVREFGIMV 403 (861)
T ss_dssp -T---TTEEEEGGGEEECTTCBCCSCCCHHHHHH------HHHHHCCCHHHHHHHHHHHHHHHCGGG--CHHHHHTTCEE
T ss_pred -C---CCccccceeEEeeCCccccccCCHHHHHH------HHHHHccCHHHHHHHHHHHHHHhcCCC--chHHHHCCCEE
Confidence 1 5799999999997 799999886 344667899999999999999887654 36999999999
Q ss_pred ccchhhhcceeeeeeeEeccCccc-cCCCcccccccccCCCCceEEEecccEEEEEEec----ccccchhhhhhcccCCc
Q psy11920 459 NKSMETLNARILPVEKIYMGNNFV-APGSQEADWNRQVGTNPALTVVNFDQWVLIHIRR----DQRNADNFLNCLNRNSN 533 (884)
Q Consensus 459 ~~~~~~v~grvLp~p~I~~g~~~~-~~~~~~g~W~~~~r~~~~~~~~~l~~W~vv~~~~----~~~~~~~f~~~L~~~~~ 533 (884)
+++|++|+|||||||+|.|+++.. ...+.+|+|+ +++++|+.++++++|+++++.. +.+.+++|+++|.+.|+
T Consensus 404 ~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g~W~--~~~~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~ 481 (861)
T 4f3t_A 404 KDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWD--MRNKQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISR 481 (861)
T ss_dssp CSSCEEEEEEECCCCCEECCSSSCCEECCBTTBCC--CTTCCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHH
T ss_pred eCCeeEEEEEEecCceEEecCCcccccCCCCCcee--ccCCEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHh
Confidence 999999999999999999997532 2357789997 7999999999999999999753 34568999999999999
Q ss_pred eeeeeeeC-ceEEEec--cchhhhHHHHhhhcccCceEEEEEecCCCchhHHhhhhhccccCCCcccccccccccchhhh
Q psy11920 534 AIGIRVKK-PQVIALQ--EEQTLSYLTALKSMRSDTQFVVIIFNAPRTDRYQAVKKYCCCERPIPSQVINSRTISREDKM 610 (884)
Q Consensus 534 ~~Gi~i~~-P~~~~~~--~~~~~~~~~~l~~~~~~~~lvl~Ilp~~~~~~Y~~IK~~~~~~~gI~SQ~i~~~tl~k~~~~ 610 (884)
.+||.+.. |.+.... .++.+.+++.++....++||||||+|++ ++.|+.||++||++.|||||||..+++.+. .
T Consensus 482 ~~G~~i~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~qlvl~Ilp~~-~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~--~ 558 (861)
T 4f3t_A 482 DAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVILPGK-TPVYAEVKRVGDTVLGMATQCVQMKNVQRT--T 558 (861)
T ss_dssp HHTCCBCSCCSEEEECCSSSSHHHHHHHHHHHSTTCCEEEEEESSS-CTHHHHHHHHHHHTSCCEEEEEETHHHHSC--C
T ss_pred hCCcccCCCCeEEEecCchHHHHHHHHHHHhhcCCCcEEEEEeCCC-ccHHHHHHHHhcccCCcceEEEEecccccc--c
Confidence 99999985 6655442 3566788887773335789999999964 689999999999999999999999998764 3
Q ss_pred hhHHhhhhhhcccccCcceeEEee---c---cceeEEEeeeeeecccCC-CCCceEEEEecccCCchhhhhHHHHHhccc
Q psy11920 611 KSIVMKIALQINCKLGGSLWSVQI---P---YDCAMVIGIDVYHEGVGS-QGQNIVGLVASTNKDFTTYYSQAVIQRRGQ 683 (884)
Q Consensus 611 ~~~~~nI~lkiN~KLGG~~w~v~~---p---~~~tMivGiDV~H~~~~~-~~~Sv~g~VaS~d~~~t~y~s~~~~Q~~~~ 683 (884)
.+++.||+|||||||||+||.+.. | .++|||||+||+|++++. ..||+||||||+|.++++|++.+++|.+++
T Consensus 559 ~q~~~ni~lKiN~KlGG~n~~l~~~~~~~~~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d~~~~~y~~~~~~Q~~~~ 638 (861)
T 4f3t_A 559 PQTLSNLCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQHRQ 638 (861)
T ss_dssp HHHHHHHHHHHHHHTTCBCCEECSTTSCGGGGSCEEEEEEEEECCC----CCCEEEEEEEECSSSSCCEEEEEEEESTTC
T ss_pred HHHHHHHHHHHHHhcCCcceeccccccccccCCceEEEEEEecccCCCCCCCceEEEEEEEcCCCcceEEEEEEEcCCCc
Confidence 689999999999999999998852 2 368999999999998763 239999999999999999999999999999
Q ss_pred chhhhhhhHHHHHHHHhhhcCCCCCceEEEeeccCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeec
Q psy11920 684 EITDSIAQPFKQALDRFIQANSVPPKQIFIFRDGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRI 763 (884)
Q Consensus 684 ei~~~l~~~~~~aL~~f~~~n~~lP~~IIiYRDGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh 763 (884)
|++++|++|+.++|+.|++.|+.+|++|||||||||||||++|+++|+++|++||+++ .. +|+|+||||||+|||
T Consensus 639 E~i~~l~~~~~~~L~~~~~~~~~~P~~IiiyRDGVsegq~~~v~~~Ev~~i~~a~~~~---~~--~~~P~it~Ivv~Krh 713 (861)
T 4f3t_A 639 EIIQDLAAMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKL---EK--DYQPGITFIVVQKRH 713 (861)
T ss_dssp CSCTTHHHHHHHHHHHHHHHHSCCCSEEEEEEESCCGGGHHHHHHHHHHHHHHHHHHH---CT--TCCCEEEEEEEECCS
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHHHHHHHHHHHHHHh---cc--CCCCcEEEEEEEccc
Confidence 9999999999999999999999999999999999999999999999999999999999 55 789999999999999
Q ss_pred chhhhhhhccCCCCCCCCCCCCceeeeeecccccceEEEEeecccccccccceeEEEeccCCCCccchhhhhhhhheeec
Q psy11920 764 NTKIFQLLSAGERPNLANAPSGSVLDHTVTRKTLSDFFLVSQHVRQGTVTPSHYIVLRNDNNVKVDHLQRLSYKLCHLYY 843 (884)
Q Consensus 764 ~~Rff~~~~~~~~~~~~NpppGTVVD~~it~p~~~dFyLvSq~~~qGT~rPthY~Vl~d~~~l~~d~lq~LTy~LC~ly~ 843 (884)
|+|||+.+..+..++.+|||||||||++||+|.+|||||+||.++|||+|||||+|||||+++++|+||+|||+|||+|+
T Consensus 714 ~tRff~~~~~~~~~~~~N~~pGTvVD~~it~p~~~dFyL~Sh~~~qGTarPthY~Vl~d~~~~~~d~lq~lty~Lc~~y~ 793 (861)
T 4f3t_A 714 HTRLFCTDKNERVGKSGNIPAGTTVDTKITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYV 793 (861)
T ss_dssp CCCEEESSGGGCBTTTTBCCTTEEECSSSSCSSBCEEEEECSCCCSSCCCCEEEEEEEETTCCCHHHHHHHHHHHTTCCT
T ss_pred cceeeecCCcccccccCCCCCceeccCccccCCCCEEEEEEEecccccccCceEEEEeCCCCCCHHHHHHHHHHHhhhhh
Confidence 99999964323346789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeeCcchhhhHHHHHhhccccCC---------------------------CCchhhhhccccC
Q psy11920 844 NWPGTIRVPAVCQYAHRIAYLTGMHLQR---------------------------LPSDVLSDKLFYL 884 (884)
Q Consensus 844 ~~~~~isvPaP~~YAhklA~~vg~~i~~---------------------------~p~~~L~~~lfyL 884 (884)
||+++|||||||||||++|+|+..++.. ..|++|+|+|||.
T Consensus 794 ~~t~~vsvpaP~yYA~~~a~R~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~~~~~M~y~ 861 (861)
T 4f3t_A 794 RCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDHQALAKAVQVHQDTLRTMYFA 861 (861)
T ss_dssp TSSBCCSSCHHHHHHHHHHHHHHHHHCCC----------------CCSTTHHHHTCCCHHHHTTTTTC
T ss_pred ccCCCCCCchHHHHHHHHHHHHHHhhccccccCCccccccCCCcccchhhhhhhhhhhhhhccCceeC
Confidence 9999999999999999999986544311 2678899999994
|
| >4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora} | Back alignment and structure |
|---|
| >1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A | Back alignment and structure |
|---|
| >1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A | Back alignment and structure |
|---|
| >3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A | Back alignment and structure |
|---|
| >2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa} | Back alignment and structure |
|---|
| >2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A | Back alignment and structure |
|---|
| >2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A | Back alignment and structure |
|---|
| >3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A | Back alignment and structure |
|---|
| >2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X* | Back alignment and structure |
|---|
| >4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A | Back alignment and structure |
|---|
| >4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A* | Back alignment and structure |
|---|
| >3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A | Back alignment and structure |
|---|
| >2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A | Back alignment and structure |
|---|
| >1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 884 | ||||
| d1yvua2 | 392 | c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 | 6e-88 | |
| d1u04a1 | 322 | b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Py | 4e-81 | |
| d1u04a2 | 447 | c.55.3.10 (A:324-770) Argonaute homologue PF0537 { | 6e-81 | |
| d1w9ha1 | 316 | c.55.3.10 (A:93-408) Hypothetical protein AF1318 { | 2e-72 | |
| d1si2a_ | 126 | b.34.14.1 (A:) Eukaryotic translation initiation f | 2e-12 |
| >d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} Length = 392 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: PIWI domain domain: Argonaute homologue Aq 1447 species: Aquifex aeolicus [TaxId: 63363]
Score = 283 bits (725), Expect = 6e-88
Identities = 65/396 (16%), Positives = 129/396 (32%), Gaps = 53/396 (13%)
Query: 504 VNFDQWVLIHI---RRDQRNADNFLNCLNRNSNAIGIRVKKPQVIALQEEQTLSYLTALK 560
+ +I + ++ + + FL L GI++K + + L
Sbjct: 35 KDVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLILAQTREEAKEKLI 94
Query: 561 S---MRSDTQFVVIIFN-------APRTDRYQAVKKYCCCERPIPSQVINSRTISREDKM 610
D V++ Y VK+ ++ IPSQVI +RT+ + +
Sbjct: 95 PVINKIKDVDLVIVFLEEYPKVDPYKSFLLYDFVKRELL-KKMIPSQVILNRTLKN-ENL 152
Query: 611 KSIVMKIALQINCKLGGSLWSVQ-IPYDCAMVIGIDVYHEGVGSQGQNIVGLVASTNKDF 669
K +++ +A Q+ K G + ++ I +GID+ + N V N
Sbjct: 153 KFVLLNVAEQVLAKTGNIPYKLKEIEGKVDAFVGIDISRITRDGKTVNAVAFTKIFNSKG 212
Query: 670 TT-YYSQAVIQRRGQEITDSIAQPFKQALDRFIQANSVPPKQIFIFRDGVSDGQLDSVSR 728
Y G+++T+ + +I + RDG
Sbjct: 213 ELVRYYLTSYPAFGEKLTEKA---IGDVFSLLEKLGFKKGSKIVVHRDGRLYRD------ 263
Query: 729 VEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQLLSAGERPNLANAPSGSVL 788
E+ +++ + Y + + + KR N + F + G
Sbjct: 264 -EVAAFKKYGE---------LYGYSLELLEIIKRNNPRFF---------SNEKFIKGYFY 304
Query: 789 DHTVTRKTLSDFFLVSQHVRQGTVTPSHYIVLRNDNNVKVDHLQRLSYKLCHLYYNWPGT 848
+ S V +GT P + + V + L L + Y+
Sbjct: 305 KLSED----SVILATYNQVYEGTHQPIKVRKVYGELPV--EVLCSQILSLTLMNYSSFQP 358
Query: 849 IRVPAVCQYAHRIAYLTGMHLQRLPSDVLSDKLFYL 884
I++PA Y+ +I L ++ P D +++L
Sbjct: 359 IKLPATVHYSDKITKLMLRGIE--PIKKEGDIMYWL 392
|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 322 | Back information, alignment and structure |
|---|
| >d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} Length = 447 | Back information, alignment and structure |
|---|
| >d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 316 | Back information, alignment and structure |
|---|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 884 | |||
| d1u04a2 | 447 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 100.0 | |
| d1yvua2 | 392 | Argonaute homologue Aq_1447 {Aquifex aeolicus [Tax | 100.0 | |
| d1w9ha1 | 316 | Hypothetical protein AF1318 {Archaeoglobus fulgidu | 100.0 | |
| d1u04a1 | 322 | Argonaute homologue PF0537 {Pyrococcus furiosus [T | 100.0 | |
| d1si2a_ | 126 | Eukaryotic translation initiation factor 2C 1, EIF | 99.71 | |
| d1t2sa_ | 123 | Argonaute 2 {Fruit fly (Drosophila melanogaster) [ | 99.53 |
| >d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: PIWI domain domain: Argonaute homologue PF0537 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.1e-68 Score=597.27 Aligned_cols=282 Identities=18% Similarity=0.261 Sum_probs=248.4
Q ss_pred CceEEEEEecCC-CchhHHhhhhhccccCCCcccccccccccchhh-------hhhHHhhhhhhcccccCcceeEEeecc
Q psy11920 565 DTQFVVIIFNAP-RTDRYQAVKKYCCCERPIPSQVINSRTISREDK-------MKSIVMKIALQINCKLGGSLWSVQIPY 636 (884)
Q Consensus 565 ~~~lvl~Ilp~~-~~~~Y~~IK~~~~~~~gI~SQ~i~~~tl~k~~~-------~~~~~~nI~lkiN~KLGG~~w~v~~p~ 636 (884)
+-.+.++|.+++ ..+.|+.||+.| ...||+||||..+|+.+.++ ++++++||++||||||||.+|.|++|+
T Consensus 148 ~~~~~~ii~~~~~~~~~y~~IKr~~-l~~gI~TQ~I~~~Tlk~~~~~~~~~r~~~~v~~NIlLQInaKLGG~pW~Ldipl 226 (447)
T d1u04a2 148 ELGLAFIAARNKLSSEKFEEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLDYRF 226 (447)
T ss_dssp SCEEEEEEECTTSCHHHHHHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHHHHHHHTTCBCCEESCCC
T ss_pred CceEEEEEEeCCCCchHHHHHHHHH-hcCCCceEEechhhccCcccccccccchHHHHHHHHHHHHHHcCCCceEecCCC
Confidence 344556666654 578999999985 99999999999999976532 468999999999999999999999999
Q ss_pred ceeEEEeeeeeecccCCCCCceEEEEecccCCchhhhhHHHHHhcccchhhhhhhHHHHHHHHhhhcCC-CCCceEEEee
Q psy11920 637 DCAMVIGIDVYHEGVGSQGQNIVGLVASTNKDFTTYYSQAVIQRRGQEITDSIAQPFKQALDRFIQANS-VPPKQIFIFR 715 (884)
Q Consensus 637 ~~tMivGiDV~H~~~~~~~~Sv~g~VaS~d~~~t~y~s~~~~Q~~~~ei~~~l~~~~~~aL~~f~~~n~-~lP~~IIiYR 715 (884)
+++||||+||+|++.++. .++++++++.+...++|++.+..|.+++|+++ +..++.++|++|++.|+ .+|++|||||
T Consensus 227 ~~~MIIGiDVth~~~~~~-~~~g~a~v~~~~g~~~~~s~v~~q~~~~E~id-l~~~i~~aL~~~~~~n~~~~P~rIIIyR 304 (447)
T d1u04a2 227 NYDYIIGIDVAPMKRSEG-YIGGSAVMFDSQGYIRKIVPIKIGEQRGESVD-MNEFFKEMVDKFKEFNIKLDNKKILLLR 304 (447)
T ss_dssp SSSEEEEEEEEEECCTTT-CEEEEEEEEETTSCEEEEEEEECCCCSSSSCC-HHHHHHHHHHHHHHTTCCCTTCEEEEEC
T ss_pred CccEEEEEeccccCCCCe-EEEEEEEEEeCCCceEEEEEEEccCCCCceec-HHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence 999999999999987654 44444444444557889998888999999885 78899999999999886 5799999999
Q ss_pred ccCCCCcccccceeehhhhHHHHHHHHhcCCCCCCCcceeEEeeeeecchhhhhhhccCCCCCCCCCCCCceeeeeeccc
Q psy11920 716 DGVSDGQLDSVSRVEIDQYQQIVDTIMTTLPSCSYAPKITAIIVQKRINTKIFQLLSAGERPNLANAPSGSVLDHTVTRK 795 (884)
Q Consensus 716 DGVseGq~~~v~~~Ev~~i~~a~~~~~~~~~~~~~~pklt~IvV~Krh~~Rff~~~~~~~~~~~~NpppGTVVD~~it~p 795 (884)
||+ |.++|+++|+++++++ .|+|+||+|+||||+|||. |+++|.|
T Consensus 305 DG~-------v~~~Ei~~ike~~~~~---------~pki~fIvVqKr~~tR~F~-------------------d~~it~p 349 (447)
T d1u04a2 305 DGR-------ITNNEEEGLKYISEMF---------DIEVVTMDVIKNHPVRAFA-------------------NMKMYFN 349 (447)
T ss_dssp SBC-------CCHHHHHHHHHHHHHH---------TCEEEEEEEESCCCCCBSS-------------------CSCEEEE
T ss_pred CCe-------ecHHHHHHHHHHHHhc---------CCcEEEEEEEecCCCcEEE-------------------CCceecc
Confidence 996 6668999999999766 6899999999999999995 3467899
Q ss_pred ccceEEEEeecccccccccceeEEEec--------cCCCCccchhhhhhhhheeeccC-CceeeeCcchhhhHHHHHhhc
Q psy11920 796 TLSDFFLVSQHVRQGTVTPSHYIVLRN--------DNNVKVDHLQRLSYKLCHLYYNW-PGTIRVPAVCQYAHRIAYLTG 866 (884)
Q Consensus 796 ~~~dFyLvSq~~~qGT~rPthY~Vl~d--------~~~l~~d~lq~LTy~LC~ly~~~-~~~isvPaP~~YAhklA~~vg 866 (884)
.++||||+||.++|||++|+||+|++| +.++.+|++|++||+||||||+| ++++|+|||||||||||+++|
T Consensus 350 ~~~dfyLvsq~~~qgt~tPt~y~Vl~~~~~~~~~~~~~~~~dqlq~lTYkLchLyyn~~~gtvRvPAP~~YAHKLA~lvg 429 (447)
T d1u04a2 350 LGGAIYLIPHKLKQAKGTPIPIKLAKKRIIKNGKVEKQSITRQDVLDIFILTRLNYGSISADMRLPAPVHYAHKFANAIR 429 (447)
T ss_dssp ETTEEEEECSCCSSSCSCCCCEEEEEEEEEETTEEEECCCCHHHHHHHHHHHTCCTTCSSCCCCSCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeeccccceEecceEEEEEeccccccCCCCCcCHHHHHHHHHHhhhhcccCCCCCeeeChHHHHHHHHHHHHH
Confidence 999999999999999999999999998 56899999999999999999987 599999999999999999999
Q ss_pred cccCCCCchhhhhccccC
Q psy11920 867 MHLQRLPSDVLSDKLFYL 884 (884)
Q Consensus 867 ~~i~~~p~~~L~~~lfyL 884 (884)
|++|.+|+..|++.||||
T Consensus 430 q~l~~~p~~~l~~~Lyfl 447 (447)
T d1u04a2 430 NEWKIKEEFLAEGFLYFV 447 (447)
T ss_dssp TTCCCCHHHHTTTCCTTC
T ss_pred hhcCCCccccccCcceeC
Confidence 999999999999999998
|
| >d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C 1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1t2sa_ b.34.14.1 (A:) Argonaute 2 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|