Psyllid ID: psy11969

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MFRKVLIRRESTPRPSAYKAALVFKLLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQF
Secondary Structure (PSIPRED)
cHHHHHHccccccccccccHHHHHHHccccHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcc
Coil and Loop (DISEMBL)
mfrkvlirrestprpsaYKAALVFKLLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLlndnsiefESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQF
Flexible Loop (DISEMBL)
mfrkvlirrestprpsayKAALVFKLLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLekeskqrilreqvsgcackLQRTTALLQFCIEALKETDAAAFLQF
Low Complexity Region (SEG)
MFRKVLIRRESTPRPSAYKAALVFKlltdlsqnlqllsEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQF
Disordered region (IsUnstruct)
*****************YKAALVFKLLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAA*****
Disordered Region (DISOPRED)
*FR**************YKAALVFKLLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLS*********ARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQ**************IL******************QFCIEALKETDAAAFLQF
Disordered Region (DISEMBL)
MFRKVLIRRESTPRPSAYKAALVFKLLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQF
Disordered Region (DISPRO)
*FRKVLIRRESTPRPSAYKAALVFKLLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFRKVLIRRESTPRPSAYKAALVFKLLTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
Q9C026	710	E3 ubiquitin-protein liga	yes	N/A	0.788	0.188	0.414	2e-25
Q29RQ5	710	E3 ubiquitin-protein liga	yes	N/A	0.788	0.188	0.414	3e-25
Q8C7M3	817	E3 ubiquitin-protein liga	yes	N/A	0.788	0.164	0.414	3e-25
Q91ZY8	710	E3 ubiquitin-protein liga	yes	N/A	0.788	0.188	0.414	3e-25
Q6ZTA4	783	Tripartite motif-containi	no	N/A	0.788	0.171	0.343	2e-20
Q505D9	768	Tripartite motif-containi	no	N/A	0.770	0.170	0.343	2e-20
Q9UJV3	735	Probable E3 ubiquitin-pro	no	N/A	0.658	0.152	0.312	7e-08
Q9QUS6	705	Probable E3 ubiquitin-pro	no	N/A	0.452	0.109	0.363	7e-05

>sp|Q9C026|TRIM9_HUMAN E3 ubiquitin-protein ligase TRIM9 OS=Homo sapiens GN=TRIM9 PE=1 SV=1

 Score =  115 bits (287), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/135 (41%), Positives = 90/135 (66%), Gaps = 1/135 (0%)

Query: 35  QLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNS 94
           Q L E   S+ E +K L ++  L  + LSQ L  LS++A+   EF+ +L+++   + +NS
Sbjct: 251 QCLEEGKHSSHE-VKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENS 309

Query: 95  IEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQF 154
           +EFE+ +VAQCDALI A+  RK QL+  +  E E K +++R+Q+S C  KL++TT L+++
Sbjct: 310 VEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEY 369

Query: 155 CIEALKETDAAAFLQ 169
           C+E +KE D + FLQ
Sbjct: 370 CLEVIKENDPSGFLQ 384

E3 ubiquitin-protein ligase which ubiquitinates itself in cooperation with an E2 enzyme UBE2D2/UBC4 and serves as a targeting signal for proteasomal degradation. May play a role in regulation of neuronal functions and may also participate in the formation or breakdown of abnormal inclusions in neurodegenerative disorders. May act as a regulator of synaptic vesicle exocytosis by controlling the availability of SNAP25 for the SNARE complex formation.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q29RQ5|TRIM9_BOVIN E3 ubiquitin-protein ligase TRIM9 OS=Bos taurus GN=TRIM9 PE=2 SV=1

 Score =  114 bits (285), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/135 (41%), Positives = 90/135 (66%), Gaps = 1/135 (0%)

Query: 35  QLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNS 94
           Q L E   S+ E +K L ++  L  + LSQ L  LS++A+   EF+ +L+++   + +NS
Sbjct: 251 QCLEEGKHSSHE-VKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENS 309

Query: 95  IEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQF 154
           +EFE+ +VAQCDALI A+  RK QL+  +  E E K +++R+Q+S C  KL++TT L+++
Sbjct: 310 VEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEY 369

Query: 155 CIEALKETDAAAFLQ 169
           C+E +KE D + FLQ
Sbjct: 370 CLEVIKENDPSGFLQ 384

E3 ubiquitin-protein ligase which ubiquitinates itself in cooperation with an E2 enzyme UBE2D2/UBC4 and serves as a targeting signal for proteasomal degradation. May play a role in regulation of neuronal functions. May act as a regulator of synaptic vesicle exocytosis by controlling the availability of SNAP25 for the SNARE complex formation.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8C7M3|TRIM9_MOUSE E3 ubiquitin-protein ligase TRIM9 OS=Mus musculus GN=Trim9 PE=1 SV=2

 Score =  114 bits (285), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/135 (41%), Positives = 90/135 (66%), Gaps = 1/135 (0%)

Query: 35  QLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNS 94
           Q L E   S+ E +K L ++  L  + LSQ L  LS++A+   EF+ +L+++   + +NS
Sbjct: 251 QCLEEGKHSSHE-VKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRTMVQQIQENS 309

Query: 95  IEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQF 154
           +EFE+ +VAQCDALI A+  RK QL+  +  E E K +++R+Q+S C  KL++TT L+++
Sbjct: 310 VEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEY 369

Query: 155 CIEALKETDAAAFLQ 169
           C+E +KE D + FLQ
Sbjct: 370 CLEVIKENDPSGFLQ 384

E3 ubiquitin-protein ligase which ubiquitinates itself in cooperation with an E2 enzyme UBE2D2/UBC4 and serves as a targeting signal for proteasomal degradation. May play a role in regulation of neuronal functions. May act as a regulator of synaptic vesicle exocytosis by controlling the availability of SNAP25 for the SNARE complex formation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q91ZY8|TRIM9_RAT E3 ubiquitin-protein ligase TRIM9 OS=Rattus norvegicus GN=Trim9 PE=1 SV=1

 Score =  114 bits (285), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/135 (41%), Positives = 90/135 (66%), Gaps = 1/135 (0%)

Query: 35  QLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNS 94
           Q L E   S+ E +K L ++  L  + LSQ L  LS++A+   EF+ +L+++   + +NS
Sbjct: 251 QCLEEGKHSSHE-VKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRTMVQQIQENS 309

Query: 95  IEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQF 154
           +EFE+ +VAQCDALI A+  RK QL+  +  E E K +++R+Q+S C  KL++TT L+++
Sbjct: 310 VEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEY 369

Query: 155 CIEALKETDAAAFLQ 169
           C+E +KE D + FLQ
Sbjct: 370 CLEVIKENDPSGFLQ 384

E3 ubiquitin-protein ligase which ubiquitinates itself in cooperation with an E2 enzyme UBE2D2/UBC4 and serves as a targeting signal for proteasomal degradation. May play a role in regulation of neuronal functions (By similarity). May act as a regulator of synaptic vesicle exocytosis by controlling the availability of SNAP25 for the SNARE complex formation.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6ZTA4|TRI67_HUMAN Tripartite motif-containing protein 67 OS=Homo sapiens GN=TRIM67 PE=2 SV=3

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/134 (34%), Positives = 85/134 (63%)

Query: 36  LLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSI 95
           L  E+ R     +K L ++       LSQ L  +S+KA+   EF+ +LK+I   + +N +
Sbjct: 325 LCLEEGRHAKHEVKPLGAMWKQHKAQLSQALNGVSDKAKEAKEFLVQLKNILQQIQENGL 384

Query: 96  EFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFC 155
           ++E+ +VAQCDAL+ A+  +K +L+  +  E+E K +++ +Q++ C  KL+++T L+++C
Sbjct: 385 DYEACLVAQCDALVDALTRQKAKLLTKVTKEREHKLKMVWDQINHCTLKLRQSTGLMEYC 444

Query: 156 IEALKETDAAAFLQ 169
           +E +KE D + FLQ
Sbjct: 445 LEVIKENDPSGFLQ 458

Homo sapiens (taxid: 9606)

>sp|Q505D9|TRI67_MOUSE Tripartite motif-containing protein 67 OS=Mus musculus GN=Trim67 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/131 (34%), Positives = 84/131 (64%)

Query: 39  EKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFE 98
           E+ R +   +K L +        LSQ L  +S+KA+   EF+ +LK+I   + +N +++E
Sbjct: 315 EEGRHSKHEVKPLGATWKQHKAQLSQALNGVSDKAKEAKEFLVQLKNILQQIQENGLDYE 374

Query: 99  SQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEA 158
           + +VAQCDAL+ A+  +K +L+  +  E+E K +++ +Q++ C  KL+++T L+++C+E 
Sbjct: 375 ACLVAQCDALVDALTRQKAKLLTKVTKEREHKLKMVWDQINHCTLKLRQSTGLMEYCLEV 434

Query: 159 LKETDAAAFLQ 169
           +KE D + FLQ
Sbjct: 435 IKEDDPSGFLQ 445

Mus musculus (taxid: 10090)

>sp|Q9UJV3|TRIM1_HUMAN Probable E3 ubiquitin-protein ligase MID2 OS=Homo sapiens GN=MID2 PE=1 SV=3

 Score = 56.6 bits (135), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 57/112 (50%)

Query: 58  LNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKK 117
           L   L  NL  L ++       + +L  I   +  N+   E++++ +CD L++ I+ RK+
Sbjct: 239 LKQTLEMNLTNLVKRNSELENQMAKLIQICQQVEVNTAMHEAKLMEECDELVEIIQQRKQ 298

Query: 118 QLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQ 169
            +   I+  K  K R L +QV+ C   L+R+T L+      LKE D A FLQ
Sbjct: 299 MIAVKIKETKVMKLRKLAQQVANCRQCLERSTVLINQAEHILKENDQARFLQ 350

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9QUS6|TRIM1_MOUSE Probable E3 ubiquitin-protein ligase MID2 OS=Mus musculus GN=Mid2 PE=2 SV=2

 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 45/77 (58%)

Query: 93  NSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALL 152
           N+   E++++ +CD L++ I+ RK+ +   I+  K  K R L +QV+ C   L+R+T L+
Sbjct: 274 NTAMHEAKLMEECDELVEIIQQRKQMIAVKIKETKVMKLRKLAQQVANCRQCLERSTVLI 333

Query: 153 QFCIEALKETDAAAFLQ 169
                 LKE D A FLQ
Sbjct: 334 NQAEHILKENDQARFLQ 350

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
91080649	673	PREDICTED: similar to Trim9 CG31721-PA [	0.758	0.191	0.558	1e-33
195386688	743	GJ23856 [Drosophila virilis] gi|19414849	0.788	0.180	0.548	1e-33
194762016	469	GF15809 [Drosophila ananassae] gi|190616	0.758	0.275	0.560	3e-33
62484356	729	Trim9, isoform A [Drosophila melanogaste	0.647	0.150	0.627	4e-33
320544943	740	Trim9, isoform B [Drosophila melanogaste	0.647	0.148	0.627	4e-33
198472725	735	GA19383 [Drosophila pseudoobscura pseudo	0.647	0.149	0.627	4e-33
195117506	437	GI23370 [Drosophila mojavensis] gi|19391	0.647	0.251	0.636	5e-33
195339881	537	GM18593 [Drosophila sechellia] gi|194130	0.647	0.204	0.627	6e-33
242014358	696	tripartite motif-containing protein, put	0.758	0.185	0.573	7e-33
195471912	460	GE18473 [Drosophila yakuba] gi|194174347	0.664	0.245	0.610	1e-32

>gi|91080649|ref|XP_974556.1| PREDICTED: similar to Trim9 CG31721-PA [Tribolium castaneum] gi|270005500|gb|EFA01948.1| hypothetical protein TcasGA2_TC007563 [Tribolium castaneum]

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/129 (55%), Positives = 98/129 (75%)

Query: 41  ARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQ 100
           +R  +  ++ L  +     T+LS NLQ LSE+ARSTTEFI+RLK ++D +N+N  EFE+ 
Sbjct: 229 SRHASHDVQALAVMCKTQKTELSHNLQQLSERARSTTEFIQRLKGMSDKVNENCEEFEAM 288

Query: 101 IVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALK 160
           + AQCDALI+AI  R+ QL++ IR +KE + R L+EQV+ C  +LQ+TTALLQFCIEALK
Sbjct: 289 VSAQCDALIEAIHHRRAQLLECIRQDKELRVRALKEQVTTCTSRLQQTTALLQFCIEALK 348

Query: 161 ETDAAAFLQ 169
           ETD++AFLQ
Sbjct: 349 ETDSSAFLQ 357

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195386688|ref|XP_002052036.1| GJ23856 [Drosophila virilis] gi|194148493|gb|EDW64191.1| GJ23856 [Drosophila virilis]

 Score =  147 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/135 (54%), Positives = 102/135 (75%), Gaps = 1/135 (0%)

Query: 35  QLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNS 94
           Q + E+   T E ++ +        T+LS NLQ LSEKARSTTEFI+RLK ++D + ++ 
Sbjct: 290 QCIGEQRHQTHE-VQSINVTCKAQKTELSHNLQQLSEKARSTTEFIQRLKGMSDKVTESC 348

Query: 95  IEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQF 154
           IEFE  + AQC+ALI+AI DR++ L++AIR++K++K RIL++Q S C  KLQ+TT L+QF
Sbjct: 349 IEFERLVHAQCEALIQAIHDRREYLLEAIRMDKDTKIRILKDQQSNCTGKLQQTTGLIQF 408

Query: 155 CIEALKETDAAAFLQ 169
           CIEALKETD+AAFLQ
Sbjct: 409 CIEALKETDSAAFLQ 423

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194762016|ref|XP_001963158.1| GF15809 [Drosophila ananassae] gi|190616855|gb|EDV32379.1| GF15809 [Drosophila ananassae]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 103/132 (78%), Gaps = 3/132 (2%)

Query: 41  ARSTTEFIKRLKSIA---DLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEF 97
           A ++ E I +  +IA   +   T+LS NLQ LSEKARSTTEFI+RLK ++D + ++ +EF
Sbjct: 18  ATASPELILKSNAIAVSREHFQTELSHNLQQLSEKARSTTEFIQRLKGMSDKVTESCMEF 77

Query: 98  ESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIE 157
           E  + AQC+ALI+AI DR++ L++AIR++K++K RIL++Q S C  KLQ+TT L+QFCIE
Sbjct: 78  ERLVHAQCEALIQAIHDRREYLLEAIRMDKDTKIRILKDQQSNCTGKLQQTTGLIQFCIE 137

Query: 158 ALKETDAAAFLQ 169
           ALKETD+AAFLQ
Sbjct: 138 ALKETDSAAFLQ 149

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|62484356|ref|NP_723600.2| Trim9, isoform A [Drosophila melanogaster] gi|28317023|gb|AAO39531.1| RE22018p [Drosophila melanogaster] gi|33413962|gb|AAP51207.1| tripartite motif protein 9 [Drosophila melanogaster] gi|61678297|gb|AAF52977.3| Trim9, isoform A [Drosophila melanogaster]

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 69/110 (62%), Positives = 93/110 (84%)

Query: 60  TDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQL 119
           T+LS NLQ LSEKARSTTEFI+RLK ++D + ++ +EFE  + AQC+ALI+AI DR++ L
Sbjct: 300 TELSHNLQQLSEKARSTTEFIQRLKGMSDKVTESCMEFERLVHAQCEALIQAIHDRREYL 359

Query: 120 VDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQ 169
           ++AIR++K++K RIL++Q S C  KLQ+TT L+QFCIEALKETD+AAFLQ
Sbjct: 360 LEAIRMDKDTKIRILKDQQSNCTGKLQQTTGLIQFCIEALKETDSAAFLQ 409

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|320544943|ref|NP_001188786.1| Trim9, isoform B [Drosophila melanogaster] gi|318068420|gb|ADV37036.1| Trim9, isoform B [Drosophila melanogaster]

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 69/110 (62%), Positives = 93/110 (84%)

Query: 60  TDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQL 119
           T+LS NLQ LSEKARSTTEFI+RLK ++D + ++ +EFE  + AQC+ALI+AI DR++ L
Sbjct: 300 TELSHNLQQLSEKARSTTEFIQRLKGMSDKVTESCMEFERLVHAQCEALIQAIHDRREYL 359

Query: 120 VDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQ 169
           ++AIR++K++K RIL++Q S C  KLQ+TT L+QFCIEALKETD+AAFLQ
Sbjct: 360 LEAIRMDKDTKIRILKDQQSNCTGKLQQTTGLIQFCIEALKETDSAAFLQ 409

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198472725|ref|XP_001356048.2| GA19383 [Drosophila pseudoobscura pseudoobscura] gi|198139133|gb|EAL33107.2| GA19383 [Drosophila pseudoobscura pseudoobscura]

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 69/110 (62%), Positives = 93/110 (84%)

Query: 60  TDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQL 119
           T+LS NLQ LSEKARSTTEFI+RLK ++D + ++ +EFE  + AQC+ALI+AI DR++ L
Sbjct: 306 TELSHNLQQLSEKARSTTEFIQRLKGMSDKVTESCMEFERLVHAQCEALIQAIHDRREYL 365

Query: 120 VDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQ 169
           ++AIR++K++K RIL++Q S C  KLQ+TT L+QFCIEALKETD+AAFLQ
Sbjct: 366 LEAIRMDKDTKIRILKDQQSNCTGKLQQTTGLIQFCIEALKETDSAAFLQ 415

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195117506|ref|XP_002003288.1| GI23370 [Drosophila mojavensis] gi|193913863|gb|EDW12730.1| GI23370 [Drosophila mojavensis]

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 70/110 (63%), Positives = 93/110 (84%)

Query: 60  TDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQL 119
           T+LS NLQ LSEKARSTTEFI+RLK ++D + ++ IEFE  + AQC+ALI+AI DR++ L
Sbjct: 8   TELSHNLQQLSEKARSTTEFIQRLKGMSDKVTESCIEFERLVHAQCEALIQAIHDRREYL 67

Query: 120 VDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQ 169
           ++AIR++K++K RIL++Q S C  KLQ+TT L+QFCIEALKETD+AAFLQ
Sbjct: 68  LEAIRMDKDTKIRILKDQQSNCTGKLQQTTGLIQFCIEALKETDSAAFLQ 117

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195339881|ref|XP_002036545.1| GM18593 [Drosophila sechellia] gi|194130425|gb|EDW52468.1| GM18593 [Drosophila sechellia]

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 69/110 (62%), Positives = 93/110 (84%)

Query: 60  TDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQL 119
           T+LS NLQ LSEKARSTTEFI+RLK ++D + ++ +EFE  + AQC+ALI+AI DR++ L
Sbjct: 108 TELSHNLQQLSEKARSTTEFIQRLKGMSDKVTESCMEFERLVHAQCEALIQAIHDRREYL 167

Query: 120 VDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQ 169
           ++AIR++K++K RIL++Q S C  KLQ+TT L+QFCIEALKETD+AAFLQ
Sbjct: 168 LEAIRMDKDTKIRILKDQQSNCTGKLQQTTGLIQFCIEALKETDSAAFLQ 217

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242014358|ref|XP_002427858.1| tripartite motif-containing protein, putative [Pediculus humanus corporis] gi|212512327|gb|EEB15120.1| tripartite motif-containing protein, putative [Pediculus humanus corporis]

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 74/129 (57%), Positives = 98/129 (75%)

Query: 41  ARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQ 100
           +R  +  ++ + +I     T+LSQ+LQ LSEKA+STTEFI+RLK++AD +N+N  EFE  
Sbjct: 251 SRHNSHDVQAINAIGKSQKTELSQHLQQLSEKAKSTTEFIQRLKALADKVNENCTEFEES 310

Query: 101 IVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALK 160
           +  QC+ LIKA+  RK+QL+D +R +K+SK R L+EQVS C  KLQ TT LLQFCIEALK
Sbjct: 311 VSFQCEQLIKAVLYRKEQLLDFVRQDKDSKLRALKEQVSVCTSKLQHTTGLLQFCIEALK 370

Query: 161 ETDAAAFLQ 169
           ETD+AAFLQ
Sbjct: 371 ETDSAAFLQ 379

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195471912|ref|XP_002088246.1| GE18473 [Drosophila yakuba] gi|194174347|gb|EDW87958.1| GE18473 [Drosophila yakuba]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/113 (61%), Positives = 94/113 (83%)

Query: 57  LLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRK 116
            + T+LS NLQ LSEKARSTTEFI+RLK ++D + ++ +EFE  + AQC+ALI+AI DR+
Sbjct: 28  FVQTELSHNLQQLSEKARSTTEFIQRLKGMSDKVTESCMEFERLVHAQCEALIQAIHDRR 87

Query: 117 KQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQ 169
           + L++AIR++K++K RIL++Q S C  KLQ+TT L+QFCIEALKETD+AAFLQ
Sbjct: 88  EYLLEAIRMDKDTKIRILKDQQSNCTGKLQQTTGLIQFCIEALKETDSAAFLQ 140

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
FB|FBgn0051721	729	Trim9 "Trim9" [Drosophila mela	0.647	0.150	0.627	2.2e-31
UNIPROTKB|Q29RQ5	710	TRIM9 "E3 ubiquitin-protein li	0.770	0.184	0.396	3.3e-23
UNIPROTKB|Q9C026	710	TRIM9 "E3 ubiquitin-protein li	0.770	0.184	0.396	3.3e-23
UNIPROTKB|F1SFF7	710	TRIM9 "Uncharacterized protein	0.770	0.184	0.396	3.3e-23
RGD|621540	710	Trim9 "tripartite motif-contai	0.770	0.184	0.396	3.3e-23
UNIPROTKB|Q91ZY8	710	Trim9 "E3 ubiquitin-protein li	0.770	0.184	0.396	3.3e-23
UNIPROTKB|F1N068	788	TRIM9 "E3 ubiquitin-protein li	0.770	0.166	0.396	4e-23
UNIPROTKB|E2RKC8	795	TRIM9 "Uncharacterized protein	0.770	0.164	0.396	4.1e-23
UNIPROTKB|I3LLR6	808	TRIM9 "Uncharacterized protein	0.770	0.162	0.396	4.2e-23
MGI|MGI:2137354	817	Trim9 "tripartite motif-contai	0.770	0.160	0.396	4.3e-23

FB|FBgn0051721 Trim9 "Trim9" [Drosophila melanogaster (taxid:7227)]

 Score = 353 (129.3 bits), Expect = 2.2e-31, P = 2.2e-31
 Identities = 69/110 (62%), Positives = 93/110 (84%)

Query:    60 TDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQL 119
             T+LS NLQ LSEKARSTTEFI+RLK ++D + ++ +EFE  + AQC+ALI+AI DR++ L
Sbjct:   300 TELSHNLQQLSEKARSTTEFIQRLKGMSDKVTESCMEFERLVHAQCEALIQAIHDRREYL 359

Query:   120 VDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQ 169
             ++AIR++K++K RIL++Q S C  KLQ+TT L+QFCIEALKETD+AAFLQ
Sbjct:   360 LEAIRMDKDTKIRILKDQQSNCTGKLQQTTGLIQFCIEALKETDSAAFLQ 409

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007411 "axon guidance" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0038007 "netrin-activated signaling pathway" evidence=IGI;IPI

GO:0007409 "axonogenesis" evidence=IMP

UNIPROTKB|Q29RQ5 TRIM9 "E3 ubiquitin-protein ligase TRIM9" [Bos taurus (taxid:9913)]

 Score = 277 (102.6 bits), Expect = 3.3e-23, P = 3.3e-23
 Identities = 52/131 (39%), Positives = 89/131 (67%)

Query:    39 EKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFE 98
             E+ + ++  +K L ++  L  + LSQ L  LS++A+   EF+ +L+++   + +NS+EFE
Sbjct:   254 EEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFE 313

Query:    99 SQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEA 158
             + +VAQCDALI A+  RK QL+  +  E E K +++R+Q+S C  KL++TT L+++C+E 
Sbjct:   314 ACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEV 373

Query:   159 LKETDAAAFLQ 169
             +KE D + FLQ
Sbjct:   374 IKENDPSGFLQ 384

GO:0030425 "dendrite" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9C026 TRIM9 "E3 ubiquitin-protein ligase TRIM9" [Homo sapiens (taxid:9606)]

 Score = 277 (102.6 bits), Expect = 3.3e-23, P = 3.3e-23
 Identities = 52/131 (39%), Positives = 89/131 (67%)

Query:    39 EKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFE 98
             E+ + ++  +K L ++  L  + LSQ L  LS++A+   EF+ +L+++   + +NS+EFE
Sbjct:   254 EEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFE 313

Query:    99 SQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEA 158
             + +VAQCDALI A+  RK QL+  +  E E K +++R+Q+S C  KL++TT L+++C+E 
Sbjct:   314 ACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEV 373

Query:   159 LKETDAAAFLQ 169
             +KE D + FLQ
Sbjct:   374 IKENDPSGFLQ 384

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0000149 "SNARE binding" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=IEA

GO:0035544 "negative regulation of SNARE complex assembly" evidence=IEA

GO:0045955 "negative regulation of calcium ion-dependent exocytosis" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

UNIPROTKB|F1SFF7 TRIM9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 277 (102.6 bits), Expect = 3.3e-23, P = 3.3e-23
 Identities = 52/131 (39%), Positives = 89/131 (67%)

Query:    39 EKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFE 98
             E+ + ++  +K L ++  L  + LSQ L  LS++A+   EF+ +L+++   + +NS+EFE
Sbjct:   254 EEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFE 313

Query:    99 SQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEA 158
             + +VAQCDALI A+  RK QL+  +  E E K +++R+Q+S C  KL++TT L+++C+E 
Sbjct:   314 ACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEV 373

Query:   159 LKETDAAAFLQ 169
             +KE D + FLQ
Sbjct:   374 IKENDPSGFLQ 384

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

RGD|621540 Trim9 "tripartite motif-containing 9" [Rattus norvegicus (taxid:10116)]

 Score = 277 (102.6 bits), Expect = 3.3e-23, P = 3.3e-23
 Identities = 52/131 (39%), Positives = 89/131 (67%)

Query:    39 EKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFE 98
             E+ + ++  +K L ++  L  + LSQ L  LS++A+   EF+ +L+++   + +NS+EFE
Sbjct:   254 EEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRTMVQQIQENSVEFE 313

Query:    99 SQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEA 158
             + +VAQCDALI A+  RK QL+  +  E E K +++R+Q+S C  KL++TT L+++C+E 
Sbjct:   314 ACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEV 373

Query:   159 LKETDAAAFLQ 169
             +KE D + FLQ
Sbjct:   374 IKENDPSGFLQ 384

GO:0000149 "SNARE binding" evidence=IPI

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005856 "cytoskeleton" evidence=IDA

GO:0008021 "synaptic vesicle" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=IEP

GO:0030054 "cell junction" evidence=IEA

GO:0030425 "dendrite" evidence=ISO;ISS

GO:0035544 "negative regulation of SNARE complex assembly" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0045955 "negative regulation of calcium ion-dependent exocytosis" evidence=IMP

UNIPROTKB|Q91ZY8 Trim9 "E3 ubiquitin-protein ligase TRIM9" [Rattus norvegicus (taxid:10116)]

 Score = 277 (102.6 bits), Expect = 3.3e-23, P = 3.3e-23
 Identities = 52/131 (39%), Positives = 89/131 (67%)

Query:    39 EKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFE 98
             E+ + ++  +K L ++  L  + LSQ L  LS++A+   EF+ +L+++   + +NS+EFE
Sbjct:   254 EEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRTMVQQIQENSVEFE 313

Query:    99 SQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEA 158
             + +VAQCDALI A+  RK QL+  +  E E K +++R+Q+S C  KL++TT L+++C+E 
Sbjct:   314 ACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEV 373

Query:   159 LKETDAAAFLQ 169
             +KE D + FLQ
Sbjct:   374 IKENDPSGFLQ 384

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1N068 TRIM9 "E3 ubiquitin-protein ligase TRIM9" [Bos taurus (taxid:9913)]

 Score = 277 (102.6 bits), Expect = 4.0e-23, P = 4.0e-23
 Identities = 52/131 (39%), Positives = 89/131 (67%)

Query:    39 EKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFE 98
             E+ + ++  +K L ++  L  + LSQ L  LS++A+   EF+ +L+++   + +NS+EFE
Sbjct:   254 EEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFE 313

Query:    99 SQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEA 158
             + +VAQCDALI A+  RK QL+  +  E E K +++R+Q+S C  KL++TT L+++C+E 
Sbjct:   314 ACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEV 373

Query:   159 LKETDAAAFLQ 169
             +KE D + FLQ
Sbjct:   374 IKENDPSGFLQ 384

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2RKC8 TRIM9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 277 (102.6 bits), Expect = 4.1e-23, P = 4.1e-23
 Identities = 52/131 (39%), Positives = 89/131 (67%)

Query:    39 EKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFE 98
             E+ + ++  +K L ++  L  + LSQ L  LS++A+   EF+ +L+++   + +NS+EFE
Sbjct:   254 EEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFE 313

Query:    99 SQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEA 158
             + +VAQCDALI A+  RK QL+  +  E E K +++R+Q+S C  KL++TT L+++C+E 
Sbjct:   314 ACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEV 373

Query:   159 LKETDAAAFLQ 169
             +KE D + FLQ
Sbjct:   374 IKENDPSGFLQ 384

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|I3LLR6 TRIM9 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 277 (102.6 bits), Expect = 4.2e-23, P = 4.2e-23
 Identities = 52/131 (39%), Positives = 89/131 (67%)

Query:    39 EKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFE 98
             E+ + ++  +K L ++  L  + LSQ L  LS++A+   EF+ +L+++   + +NS+EFE
Sbjct:   254 EEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFE 313

Query:    99 SQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEA 158
             + +VAQCDALI A+  RK QL+  +  E E K +++R+Q+S C  KL++TT L+++C+E 
Sbjct:   314 ACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEV 373

Query:   159 LKETDAAAFLQ 169
             +KE D + FLQ
Sbjct:   374 IKENDPSGFLQ 384

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:2137354 Trim9 "tripartite motif-containing 9" [Mus musculus (taxid:10090)]

 Score = 277 (102.6 bits), Expect = 4.3e-23, P = 4.3e-23
 Identities = 52/131 (39%), Positives = 89/131 (67%)

Query:    39 EKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFE 98
             E+ + ++  +K L ++  L  + LSQ L  LS++A+   EF+ +L+++   + +NS+EFE
Sbjct:   254 EEGKHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRTMVQQIQENSVEFE 313

Query:    99 SQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEA 158
             + +VAQCDALI A+  RK QL+  +  E E K +++R+Q+S C  KL++TT L+++C+E 
Sbjct:   314 ACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEV 373

Query:   159 LKETDAAAFLQ 169
             +KE D + FLQ
Sbjct:   374 IKENDPSGFLQ 384

GO:0000149 "SNARE binding" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005856 "cytoskeleton" evidence=ISO

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016079 "synaptic vesicle exocytosis" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030425 "dendrite" evidence=ISO;IDA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0035544 "negative regulation of SNARE complex assembly" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0045202 "synapse" evidence=IEA

GO:0045955 "negative regulation of calcium ion-dependent exocytosis" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	170
smart00502	127	smart00502, BBC, B-Box C-terminal domain	5e-14

>gnl|CDD|128778 smart00502, BBC, B-Box C-terminal domain

 Score = 64.6 bits (158), Expect = 5e-14
 Identities = 34/110 (30%), Positives = 58/110 (52%)

Query: 61  DLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLV 120
            L + L  L +KA    + +K+L SI   + +N+ + E+QI A  D L  A+  RKKQL+
Sbjct: 4   ALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLL 63

Query: 121 DAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQF 170
           + +  +KE+K ++L +Q+     K ++ +  + F  EAL   D    L  
Sbjct: 64  EDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEALNSGDPTELLLS 113

Coiled coil region C-terminal to (some) B-Box domains. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
KOG4367|consensus	699		99.5
smart00502	127	BBC B-Box C-terminal domain. Coiled coil region C-	99.44
PF12126	324	DUF3583: Protein of unknown function (DUF3583); In	95.94
PF07139	302	DUF1387: Protein of unknown function (DUF1387); In	95.01
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	88.5
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.65
PRK09173	159	F0F1 ATP synthase subunit B; Validated	83.54
PRK11820	288	hypothetical protein; Provisional	82.6
PF08702	146	Fib_alpha: Fibrinogen alpha/beta chain family; Int	80.52

>KOG4367|consensus

Probab=99.50  E-value=3e-13  Score=112.20  Aligned_cols=137  Identities=39%  Similarity=0.687  Sum_probs=131.6

Q ss_pred             HhcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy11969         33 NLQLLSEKARSTTEFIKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAI  112 (170)
Q Consensus        33 ~~~~~~~~~~Hk~H~v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L  112 (170)
                      -.||+.++ .|.+|+|.++.-+|+.+|.+|...++.|.++.++..+++..+....+.+++++...+..+..+++.|+..|
T Consensus       246 c~~clee~-khs~hevkal~~~~k~hksqls~al~~lsdrak~a~e~l~~lr~m~~~iq~n~~ef~a~l~~q~d~lid~l  324 (699)
T KOG4367|consen  246 CYQCLEEG-KHSSHEVKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDAL  324 (699)
T ss_pred             HHHHHHhh-cccchhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence            35788775 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccC
Q psy11969        113 EDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDAAAFLQF  170 (170)
Q Consensus       113 ~e~e~~ll~~Le~e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e~l~~~~~~~fLq~  170 (170)
                      +.++..++..+.++...+++.++.++.++..++.....++.++-+.++++|+..|+|+
T Consensus       325 ~~rk~qll~~v~~e~e~k~kv~r~qi~~ct~kl~qtt~lme~cle~ike~dps~~lqi  382 (699)
T KOG4367|consen  325 NRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQI  382 (699)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHhhheeeeeeehhhHHHHHHHHhccCCCcceeeh
Confidence            9999999999999999999999999999999999999999999999999999999873

>smart00502 BBC B-Box C-terminal domain

Probab=99.44  E-value=1.5e-11  Score=86.99  Aligned_cols=111  Identities=31%  Similarity=0.429  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969         59 NTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQV  138 (170)
Q Consensus        59 K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l~~~~  138 (170)
                      |+.|...+..+..+...+...+..+......+..++...+..|...|+.|+.+|++++..++..|+.+...+...+..+.
T Consensus         2 k~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~   81 (127)
T smart00502        2 REALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQL   81 (127)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCcccccc
Q psy11969        139 SGCACKLQRTTALLQFCIEALKETDAAAFLQ  169 (170)
Q Consensus       139 ~~l~~~l~~l~~~i~~l~e~l~~~~~~~fLq  169 (170)
                      ..++..+..+..++.+++..+..+++..||+
T Consensus        82 ~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~  112 (127)
T smart00502       82 ESLTQKQEKLSHAINFTEEALNSGDPTELLL  112 (127)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence            9999999999999999999999888888875

Coiled coil region C-terminal to (some) B-Box domains

>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length

Probab=95.94  E-value=0.49  Score=38.34  Aligned_cols=82  Identities=13%  Similarity=0.159  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969         79 FIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILREQVSGCACKLQRTTALLQFCIEA  158 (170)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e~  158 (170)
                      .-..+.....++.......+..|.+....+...++.+++.||+.++...+...+.+..++.++..-+.++...-..++.+
T Consensus        18 ahaqm~sav~qL~~~r~~teelIr~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLqRir~G~~LVekM   97 (324)
T PF12126_consen   18 AHAQMRSAVSQLGRARADTEELIRARVRQVVAHVQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQRIRTGGALVEKM   97 (324)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHH
Confidence            33344444555555556677788888899999999999999999999999999999999999999998887777666654


Q ss_pred             hc
Q psy11969        159 LK  160 (170)
Q Consensus       159 l~  160 (170)
                      ..
T Consensus        98 ~~   99 (324)
T PF12126_consen   98 KL   99 (324)
T ss_pred             HH
Confidence            43

It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.

>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals

Probab=95.01  E-value=0.78  Score=37.44  Aligned_cols=66  Identities=15%  Similarity=0.146  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969         71 EKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKESKQRILRE  136 (170)
Q Consensus        71 ~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~~l~~l~~  136 (170)
                      .-.++++.....+..=.-.+++.+...-..|...|..|+.+|.+++-.|+..++.-..+....|..
T Consensus       157 KSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~a  222 (302)
T PF07139_consen  157 KSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDA  222 (302)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555455777888888999999999999999999999999988776666555533

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=88.50  E-value=7.5  Score=28.05  Aligned_cols=98  Identities=14%  Similarity=0.214  Sum_probs=61.5

Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q psy11969         48 IKRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCD--------ALIKAIEDRKKQL  119 (170)
Q Consensus        48 v~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~--------~L~~~L~e~e~~l  119 (170)
                      +-|+....++.+..+...+........++..........+...+..+......+...-.        .-..-++......
T Consensus        29 ~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a  108 (141)
T PRK08476         29 YKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAF  108 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999988888888887777777666666555544444433222        2233334444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969        120 VDAIRLEKESKQRILREQVSGCACKL  145 (170)
Q Consensus       120 l~~Le~e~~~~l~~l~~~~~~l~~~l  145 (170)
                      ...|+.+.......+..++..+..++
T Consensus       109 ~~~l~~e~~~~~~~l~~qv~~~~~~~  134 (141)
T PRK08476        109 AKQLANQKQELKEQLLSQMPEFKEAL  134 (141)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            44555555555555555555554443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.65  E-value=26  Score=32.29  Aligned_cols=97  Identities=9%  Similarity=0.210  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Q psy11969         60 TDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAI----------RLEKES  129 (170)
Q Consensus        60 ~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~L----------e~e~~~  129 (170)
                      .+++..+..++...+.....+..+.+....+..+++.+..++....+ -+..|.+|-..++..+          +.+...
T Consensus       561 ~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d-~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~  639 (717)
T PF10168_consen  561 EEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKD-KQEKLMKRVDRVLQLLNSQLPVLSEAEREFKK  639 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence            34444444444444444444444555555555555555555444333 2445555555555443          344444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969        130 KQRILREQVSGCACKLQRTTALLQFCIE  157 (170)
Q Consensus       130 ~l~~l~~~~~~l~~~l~~l~~~i~~l~e  157 (170)
                      .++.+...+..+...+..++..+...+.
T Consensus       640 EL~~~~~~l~~l~~si~~lk~k~~~Q~~  667 (717)
T PF10168_consen  640 ELERMKDQLQDLKASIEQLKKKLDYQQR  667 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556666666666666666666655433

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=83.54  E-value=15  Score=26.83  Aligned_cols=96  Identities=9%  Similarity=0.084  Sum_probs=61.2

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q psy11969         49 KRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAI--------EDRKKQLV  120 (170)
Q Consensus        49 ~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L--------~e~e~~ll  120 (170)
                      -||..+.++.+..+...+........+........+..+......+..........-..+..-.        .......-
T Consensus        25 ~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~a~  104 (159)
T PRK09173         25 GMIARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKLAE  104 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5799999999999999999999888888888888777777666655554444443333332222        22222233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969        121 DAIRLEKESKQRILREQVSGCACK  144 (170)
Q Consensus       121 ~~Le~e~~~~l~~l~~~~~~l~~~  144 (170)
                      ..|+.+.......+..++..+...
T Consensus       105 ~~I~~ek~~a~~el~~~~~~lA~~  128 (159)
T PRK09173        105 QKIAQAETDAINAVRSSAVDLAIA  128 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666665555433

>PRK11820 hypothetical protein; Provisional

Probab=82.60  E-value=25  Score=28.68  Aligned_cols=114  Identities=18%  Similarity=0.187  Sum_probs=77.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969         51 LKSIADLLNTDLSQNLQLLSE-KARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKES  129 (170)
Q Consensus        51 leeA~~~~K~~L~~~l~~L~~-~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~  129 (170)
                      .++.+......+...+..+.. +..+-......+...+..+.......+............-|.++-+.++..++...=.
T Consensus       124 ~~~~~~~l~~al~~AL~~l~~~R~~EG~~L~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~rL~~rl~el~~~~d~~Rl~  203 (288)
T PRK11820        124 LEALWAALLAALDEALDDLIEMREREGAALKADLLQRLDAIEALVAKIEALAPEILEEYRERLRERLEELLGELDENRLE  203 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence            445566677778888877766 4567777777788888888887777777776677777777777777766444443333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q psy11969        130 KQRILREQVSGCACKLQRTTALLQFCIEALKETDA  164 (170)
Q Consensus       130 ~l~~l~~~~~~l~~~l~~l~~~i~~l~e~l~~~~~  164 (170)
                      ..-.+-.......+++.++..-+....+.+..+.+
T Consensus       204 qEval~adK~DI~EEi~RL~sHl~~f~~~L~~~~~  238 (288)
T PRK11820        204 QEVALLAQKADIAEELDRLKSHLKEFREILKKGGP  238 (288)
T ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHHHHHHhcCCC
Confidence            33334555666777777777777777777766554

>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation

Probab=80.52  E-value=20  Score=26.18  Aligned_cols=116  Identities=13%  Similarity=0.100  Sum_probs=72.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy11969         49 KRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIV---AQCDALIKAIEDRKKQLVDAIRL  125 (170)
Q Consensus        49 ~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~---~~f~~L~~~L~e~e~~ll~~Le~  125 (170)
                      .-|.+...++.......++.|+....++.+.-+....-+..+.+..........   ..+...-.-|+++-...++.+..
T Consensus        21 C~i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~  100 (146)
T PF08702_consen   21 CGIQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKII  100 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             chHHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHh
Confidence            346667777777777888888777777776655544444444433222221111   12222222222222334455556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc
Q psy11969        126 EKESKQRILREQVSGCACKLQRTTALLQFCIEALKETDA  164 (170)
Q Consensus       126 e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e~l~~~~~  164 (170)
                      ........|+..+......+..|+..+....+.++++..
T Consensus       101 ~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~Ck~pC~  139 (146)
T PF08702_consen  101 NQPSNIRVLQNILRSNRQKIQRLEQDIDQQERYCKEPCK  139 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTBE
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccc
Confidence            666678888999999999999999999999888877653

During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	95.08
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	94.55
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	94.1
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	93.71
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	89.87
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	89.83
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	88.6
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	86.34
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	84.93
1nfn_A	191	Apolipoprotein E3; lipid transport, heparin-bindin	80.84
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	80.07

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=95.08  E-value=0.0028  Score=39.63  Aligned_cols=27  Identities=4%  Similarity=-0.074  Sum_probs=22.4

Q ss_pred             cccccccCcccccccchHHHHHHHHHHHH
Q psy11969         35 QLLSEKARSTTEFIKRLKSIADLLNTDLS   63 (170)
Q Consensus        35 ~~~~~~~~Hk~H~v~~leeA~~~~K~~L~   63 (170)
                      .|..  ++|++|.++||++|++.+|++|+
T Consensus        42 ~C~~--~~H~~H~~~~l~ea~~~~k~~L~   68 (72)
T 2csv_A           42 LCMF--QEHKNHSTVTVEEAKAEKETESG   68 (72)
T ss_dssp             HHHH--TTTSSSCEEEHHHHHHHHSSCCC
T ss_pred             ccCC--CCCCCCCEecHHHHHHHHHHHHH
Confidence            4554  48999999999999999987664

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=94.55  E-value=1.9  Score=36.64  Aligned_cols=113  Identities=13%  Similarity=0.171  Sum_probs=76.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969         49 KRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRL----KSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIR  124 (170)
Q Consensus        49 ~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l----~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le  124 (170)
                      +-|.....+....+...|+.|+....++++.-...    +..++.++.+..... ...+.|.++-.-|+.+...|-..|+
T Consensus        49 CrLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVd  127 (562)
T 3ghg_A           49 CRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVI  127 (562)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             cchhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHH
Confidence            44666677777788888888888877776544442    333444443333333 5566677777777788777878887


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy11969        125 LEKESKQRILREQVSGCACKLQRTTALLQFCIEALKETD  163 (170)
Q Consensus       125 ~e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e~l~~~~  163 (170)
                      ..- ..++.|+..+.....+|.+|...|..--..++...
T Consensus       128 nQl-snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsC  165 (562)
T 3ghg_A          128 EKV-QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSC  165 (562)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTB
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            777 66678888888888888888877766555565443

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=94.10  E-value=0.00023  Score=43.60  Aligned_cols=23  Identities=13%  Similarity=0.020  Sum_probs=19.9

Q ss_pred             cCcccccccchHHHHHHHHHHHH
Q psy11969         41 ARSTTEFIKRLKSIADLLNTDLS   63 (170)
Q Consensus        41 ~~Hk~H~v~~leeA~~~~K~~L~   63 (170)
                      ++|++|.++||++|++.+|++|+
T Consensus        38 ~~H~~H~~~~l~~a~~~~k~~L~   60 (64)
T 2d8u_A           38 GIHKACEVAPLQSVFQGQKTESG   60 (64)
T ss_dssp             SSTTSSCEECTTTCCSSCCCCSS
T ss_pred             CcCCCCCeeCHHHHHHHHHHHHH
Confidence            48999999999999998876654

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=93.71  E-value=1.9e-05  Score=51.31  Aligned_cols=30  Identities=23%  Similarity=0.247  Sum_probs=24.4

Q ss_pred             cCcccccccchHHHHHHHHHHHHHHHHHHH
Q psy11969         41 ARSTTEFIKRLKSIADLLNTDLSQNLQLLS   70 (170)
Q Consensus        41 ~~Hk~H~v~~leeA~~~~K~~L~~~l~~L~   70 (170)
                      ++|++|.++||++|++++|++|+..+..++
T Consensus        48 ~~H~~H~~~~l~ea~~~~k~~L~~~l~~L~   77 (84)
T 2dja_A           48 GRHRDHQVASLNDRFEKLKQTLEMNLTNLV   77 (84)
T ss_dssp             STTTTCCBCCCCSSCCCCCCCCCCCCCCCC
T ss_pred             CCCCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence            489999999999999998887766555443

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=89.87  E-value=0.028  Score=32.71  Aligned_cols=16  Identities=6%  Similarity=0.032  Sum_probs=14.1

Q ss_pred             cCcccccccchHHHHH
Q psy11969         41 ARSTTEFIKRLKSIAD   56 (170)
Q Consensus        41 ~~Hk~H~v~~leeA~~   56 (170)
                      ++|++|.++||++|++
T Consensus        37 ~~H~~H~~~~l~ea~~   52 (53)
T 2did_A           37 HTHRAHTVVPLSGPSS   52 (53)
T ss_dssp             STTTTSCEEECCCTTT
T ss_pred             CCCCCCcEeeHHHHhc
Confidence            4899999999999864

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=89.83  E-value=0.054  Score=31.00  Aligned_cols=20  Identities=5%  Similarity=-0.066  Sum_probs=13.8

Q ss_pred             cccccccCcccccccchHHHHH
Q psy11969         35 QLLSEKARSTTEFIKRLKSIAD   56 (170)
Q Consensus        35 ~~~~~~~~Hk~H~v~~leeA~~   56 (170)
                      .|.. + +|++|.+.||++|++
T Consensus        31 ~C~~-~-~H~~H~~~~l~ea~~   50 (50)
T 2yvr_A           31 DCQL-N-AHKDHQYQFLEDAVR   50 (50)
T ss_dssp             HHHH-T-TTTTCCEEETTC---
T ss_pred             ccCC-C-cCCCCceecHHHHhC
Confidence            4544 2 899999999999864

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=86.34  E-value=5.2  Score=26.23  Aligned_cols=92  Identities=16%  Similarity=0.163  Sum_probs=56.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy11969         50 RLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVAQCDALIKAIEDRKKQLVDAIRLEKES  129 (170)
Q Consensus        50 ~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~~f~~L~~~L~e~e~~ll~~Le~e~~~  129 (170)
                      |+...+...++.|...-..+.....++......+... ......++..+..|..+.+.|-..|-++-..|+..-..+.  
T Consensus         2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE-~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~--   78 (97)
T 2eqb_B            2 PLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKE-NELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEK--   78 (97)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             cHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            5666666666666655555555444555444444332 2344577888999999999999999999999997664333  


Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy11969        130 KQRILREQVSGCACKLQ  146 (170)
Q Consensus       130 ~l~~l~~~~~~l~~~l~  146 (170)
                        ..++....++..++.
T Consensus        79 --~~~e~kn~~L~~qL~   93 (97)
T 2eqb_B           79 --YAIEILNKRLTEQLR   93 (97)
T ss_dssp             --HHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHh
Confidence              233444444444443

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.93  E-value=0.06  Score=32.13  Aligned_cols=16  Identities=0%  Similarity=-0.155  Sum_probs=13.8

Q ss_pred             cCcccccccchHHHHH
Q psy11969         41 ARSTTEFIKRLKSIAD   56 (170)
Q Consensus        41 ~~Hk~H~v~~leeA~~   56 (170)
                      ++|++|.+.||++|++
T Consensus        43 ~eH~~H~~~~l~ea~~   58 (59)
T 2yrg_A           43 QEHRGHHTFPTSGPSS   58 (59)
T ss_dssp             TTTTTCCEEECCSSCC
T ss_pred             CcCCCCcEeeHHHHhc
Confidence            4899999999998753

>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A

Probab=80.84  E-value=11  Score=27.56  Aligned_cols=6  Identities=17%  Similarity=0.036  Sum_probs=2.4

Q ss_pred             HHHHHH
Q psy11969         27 LTDLSQ   32 (170)
Q Consensus        27 ~~~~~~   32 (170)
                      ..++++
T Consensus        37 ~~~l~~   42 (191)
T 1nfn_A           37 LRWVQT   42 (191)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            344443

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=80.07  E-value=25  Score=29.45  Aligned_cols=111  Identities=11%  Similarity=0.105  Sum_probs=62.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy11969         49 KRLKSIADLLNTDLSQNLQLLSEKARSTTEFIKRLKSIADLLNDNSIEFESQIVA---QCDALIKAIEDRKKQLVDAIRL  125 (170)
Q Consensus        49 ~~leeA~~~~K~~L~~~l~~L~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~I~~---~f~~L~~~L~e~e~~ll~~Le~  125 (170)
                      +.|.+-...++..+...+..|+.....+.+.......-+..++.........+..   ........|++....+-+.+..
T Consensus        85 C~l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~  164 (464)
T 1m1j_B           85 CELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDN  164 (464)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            5677877888888888888888887777665544333334444333333332222   1222333344444444344443


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy11969        126 EKESKQRILREQVSGCACKLQRTTALLQFCIEAL  159 (170)
Q Consensus       126 e~~~~l~~l~~~~~~l~~~l~~l~~~i~~l~e~l  159 (170)
                      .....+..|...+..+...+..|...+......+
T Consensus       165 ~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~~  198 (464)
T 1m1j_B          165 NIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYC  198 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3445555666667777777777776666555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	95.9
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	92.8
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	90.43
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	88.72
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	87.09
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	81.25

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.001  Score=38.74  Aligned_cols=24  Identities=4%  Similarity=-0.071  Sum_probs=19.7

Q ss_pred             cccccccCcccccccchHHHHHHHHH
Q psy11969         35 QLLSEKARSTTEFIKRLKSIADLLNT   60 (170)
Q Consensus        35 ~~~~~~~~Hk~H~v~~leeA~~~~K~   60 (170)
                      .|+.+  +|+||+++||++|++++|.
T Consensus        35 ~C~~~--~H~~H~~~~l~~a~~~~k~   58 (59)
T d2csva1          35 LCMFQ--EHKNHSTVTVEEAKAEKET   58 (59)
T ss_dssp             HHHHT--TTSSSCEEEHHHHHHHHSS
T ss_pred             ccCcc--cCCCCCeeCHHHHHHHHhc
Confidence            47643  8999999999999988763

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.80  E-value=0.00084  Score=37.99  Aligned_cols=24  Identities=8%  Similarity=-0.153  Sum_probs=18.5

Q ss_pred             cccccccCcccccccchHHHHHHHH
Q psy11969         35 QLLSEKARSTTEFIKRLKSIADLLN   59 (170)
Q Consensus        35 ~~~~~~~~Hk~H~v~~leeA~~~~K   59 (170)
                      .|.. ++.|++|++.+|++|++++|
T Consensus        26 ~C~~-~~~Hk~H~v~~l~~a~~~~K   49 (51)
T d2d8ua1          26 MCKV-FGIHKACEVAPLQSVFQGQK   49 (51)
T ss_dssp             HHHH-SSSTTSSCEECTTTCCSSCC
T ss_pred             cccC-cCCcCcCcCcCHHHHHHHHc
Confidence            4642 24799999999999987665

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.43  E-value=0.00021  Score=43.35  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=20.9

Q ss_pred             cCcccccccchHHHHHHHHHHHHHHH
Q psy11969         41 ARSTTEFIKRLKSIADLLNTDLSQNL   66 (170)
Q Consensus        41 ~~Hk~H~v~~leeA~~~~K~~L~~~l   66 (170)
                      +.|++|.+.+|++|++.+|..|...+
T Consensus        41 ~~Hk~H~~~~i~~a~~~~k~~l~~~l   66 (71)
T d2djaa1          41 GRHRDHQVASLNDRFEKLKQTLEMNL   66 (71)
T ss_dssp             STTTTCCBCCCCSSCCCCCCCCCCCC
T ss_pred             CCCCCCcCcCHHHHHHHHHHHHHHHH
Confidence            37999999999999988876665433

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=88.72  E-value=0.056  Score=28.31  Aligned_cols=16  Identities=0%  Similarity=-0.070  Sum_probs=12.1

Q ss_pred             cccccccCcccccccch
Q psy11969         35 QLLSEKARSTTEFIKRL   51 (170)
Q Consensus        35 ~~~~~~~~Hk~H~v~~l   51 (170)
                      .|.. +++|++|.++||
T Consensus        24 ~C~~-~~~H~~H~v~pi   39 (39)
T d1frea_          24 ICRD-SLKHASHNFLPI   39 (39)
T ss_dssp             TTSS-CSSCTTCCCCCC
T ss_pred             cCcC-CCCcCCCcEeeC
Confidence            4643 358999999996

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.09  E-value=0.061  Score=28.29  Aligned_cols=16  Identities=6%  Similarity=-0.108  Sum_probs=11.9

Q ss_pred             cccccccCcccccccch
Q psy11969         35 QLLSEKARSTTEFIKRL   51 (170)
Q Consensus        35 ~~~~~~~~Hk~H~v~~l   51 (170)
                      .|. .+++|++|.++||
T Consensus        25 ~C~-~~~~H~~H~v~pi   40 (40)
T d2dida1          25 ICA-ISHTHRAHTVVPL   40 (40)
T ss_dssp             HHH-TSSTTTTSCEEEC
T ss_pred             cCc-CCCCcCCCcEecC
Confidence            354 2348999999996

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.25  E-value=0.12  Score=28.00  Aligned_cols=18  Identities=11%  Similarity=0.003  Sum_probs=13.1

Q ss_pred             cccccccCcccccccchHH
Q psy11969         35 QLLSEKARSTTEFIKRLKS   53 (170)
Q Consensus        35 ~~~~~~~~Hk~H~v~~lee   53 (170)
                      .|.. .+.|+||++.||+|
T Consensus        30 ~C~~-~~~H~~H~~~~l~e   47 (47)
T d2dq5a1          30 LCKL-VGRHRDHQVAALSE   47 (47)
T ss_dssp             HHHH-TSSTTSSCCCCSCC
T ss_pred             cCcC-cCCcCCCeEeeCCC
Confidence            4632 24799999999874