Psyllid ID: psy12048

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MGVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLVILDADDLGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLPPAPSELNFDNLSPEELEKRIKNLKKKVREITVQVTHPVEMPRQLNLKVSLKPPAPSELNFDNLSPEELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKLSLHGEEGEGEGTHAKYT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccHHcccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccccccEEccccccHHHccHHHHHHHHHHHHcccccccccccHHHccccccccccccccEEcccHHcccccccccccEHcccEEEccccccccccccccHHHcccccccccccccccccccHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mgvyiqpsrrpdgtfRKAIRVkagyvpqdevplyeskgkqfanrqaaqsipigldpshvkkpvnpqnpipglvildaddlgyvpqdevplyeskgkqfanrqaaqsipigldpshvkkpvnpqnpipglppapselnfdnlspEELEKRIKNLKKKVREITVQvthpvemprqlnlkvslkppapselnfdnlspEELEKRIKNLKKKVREIKTLEQKIEsgeiknpeKDQLEKLQRKPDLLSEIMALKLslhgeegegegthakyt
Flexible Loop (DISEMBL)
mgvyiqpsrrpdgtfrkairvkagyvpqdevplYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLVILDADDLGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLPPAPSELNFDNLSPEELEKRIKNLKKKVREITvqvthpvemprqlNLKVSLKPPAPselnfdnlspeeLEKRIKNLKKKVREIKTleqkiesgeiknpekdqlEKLQRKPDLLSEIMALKlslhgeegegegthakyt
Low Complexity Region (SEG)
MGVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLVILDADDLGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLPPAPSELNFDNLSPEELEKRIKNLKKKVREITVQVTHPVEMPRQLNLKVSLKPPAPSELNFDNLSPEELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKLSLHgeegegegTHAKYT
Disordered region (IsUnstruct)
*****************AIRVKAGYVP*****************************************IPGLVILDADDLGYVPQDEVPL**********************************************************************TV*********************************************************************************************************
Disordered Region (DISOPRED)
********RRPDGTF*K*I*****YVPQDEVPLY******************************************************************************************************************************************************************************VR************************LQR*PDLL*************************
Disordered Region (DISEMBL)
MGVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLVILDADDLGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLPPAPSELNFDNLSPEELEKRIKNLKKKVREITVQVTHPVEMPRQLNLKVSLKPPAPSELNFDNLSPEELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKLSLH**************
Disordered Region (DISPRO)
*****Q**RRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHV************LVILDA*DLGYVPQDEVPLYESKGKQFAN********************************************************VREI********************************LSPEELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKLSLH**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLVILDADDLGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLPPAPSELNFDNLSxxxxxxxxxxxxxxxxxxxxxVTHPVEMPRQLNLKVSLKPPAPSELNFDNLSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNPEKDQLEKLQRKPDLLSEIMALKLSLHGEEGEGEGTHAKYT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
Q2F5J3	193	Partner of Y14 and mago O	N/A	N/A	0.640	0.886	0.298	3e-17
B0WII7	238	Partner of Y14 and mago O	N/A	N/A	0.280	0.315	0.472	6e-13
Q16LW2	253	Partner of Y14 and mago O	N/A	N/A	0.277	0.292	0.432	1e-12
P82804	207	Partner of Y14 and mago O	yes	N/A	0.198	0.256	0.660	2e-12
B4NSP6	204	Partner of Y14 and mago O	N/A	N/A	0.198	0.259	0.660	2e-12
Q8CHP5	203	Partner of Y14 and mago O	yes	N/A	0.528	0.694	0.343	5e-12
Q7Q6B5	233	Partner of Y14 and mago O	yes	N/A	0.213	0.244	0.6	1e-11
Q640E9	199	Partner of Y14 and mago O	N/A	N/A	0.606	0.814	0.361	1e-11
B1WB17	200	Partner of Y14 and mago O	yes	N/A	0.569	0.76	0.368	1e-11
Q9BRP8	204	Partner of Y14 and mago O	yes	N/A	0.254	0.333	0.478	5e-09

>sp|Q2F5J3|WIBG_BOMMO Partner of Y14 and mago OS=Bombyx mori GN=wibg PE=2 SV=1

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 113/255 (44%), Gaps = 84/255 (32%)

Query: 4   YIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPV 63
           +I  ++RPDGT+RK  R+K GYVPQ+EVPLYESKGKQF  RQ    +P+GL P  V +  
Sbjct: 16  FIPATQRPDGTWRKPRRIKEGYVPQEEVPLYESKGKQFRARQ-NDGLPVGLTPEIVAQAQ 74

Query: 64  NPQN------PIPGLVILDADDLGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVK 117
             +       PIPG++I                 E K K+       +     L    ++
Sbjct: 75  KKKGQRSTIQPIPGMII---------------TVEKKKKKKKTVTGVEEAAEKLAKCEIQ 119

Query: 118 KPVNPQNPIPGLPPAPSELNFDNLSPEELEKRIKNLKKKVREITVQVTHPVEMPRQLNLK 177
           +P  P   +P           +++S  +  KR+KNL+KK+REI                 
Sbjct: 120 EPTLPSQSVP----------TESISQSDPTKRLKNLRKKLREIEF--------------- 154

Query: 178 VSLKPPAPSELNFDNLSPEELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQR 237
                                                LE+KI++G +K+P+KDQ EK+ +
Sbjct: 155 -------------------------------------LEEKIKAGLLKSPDKDQKEKMSK 177

Query: 238 KPDLLSEIMALKLSL 252
           K ++L+EI  LK S+
Sbjct: 178 KNEILNEIDILKNSI 192

Regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation.
Bombyx mori (taxid: 7091)

>sp|B0WII7|WIBG_CULQU Partner of Y14 and mago OS=Culex quinquefasciatus GN=wibg PE=3 SV=1

 Score = 74.7 bits (182), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 55/91 (60%), Gaps = 16/91 (17%)

Query: 2  GVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKK 61
          G +I  ++RPDGT+RK  RV+ GYVPQ+EVPLYESKGK FA +    S+P GL P   +K
Sbjct: 10 GKFIPATQRPDGTWRKPRRVRDGYVPQEEVPLYESKGKLFAQK---PSLPPGLPPEMAQK 66

Query: 62 PVN-------------PQNPIPGLVILDADD 79
                           QNP+PGL+IL  D+
Sbjct: 67 AREKREKEQRKAAARPAQNPVPGLLILHEDN 97

Regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation.

Culex quinquefasciatus (taxid: 7176)

>sp|Q16LW2|WIBG_AEDAE Partner of Y14 and mago OS=Aedes aegypti GN=wibg PE=3 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 55/97 (56%), Gaps = 23/97 (23%)

Query: 2   GVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKK 61
           G +I  ++RPDGT+RK  RV+ GYVPQ+EVPLYESKGK FA +     +P G+ P   +K
Sbjct: 10  GKFIPSTQRPDGTWRKPRRVRDGYVPQEEVPLYESKGKLFAQKPL---LPPGMSPEMAQK 66

Query: 62  PVN--------------------PQNPIPGLVILDAD 78
                                  PQNP+PGL+IL+ D
Sbjct: 67  SREKREREQRIKQQREADANRRPPQNPVPGLLILNGD 103

Regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation.

Aedes aegypti (taxid: 7159)

>sp|P82804|WIBG_DROME Partner of Y14 and mago OS=Drosophila melanogaster GN=wibg PE=1 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 44/56 (78%), Gaps = 3/56 (5%)

Query: 2  GVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQF-ANRQAAQSIPIGLDP 56
          G +I  ++RPDGT+RKA RVK GYVPQ+EVPLYESKGKQF A RQA   +P G+ P
Sbjct: 10 GKFIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKGKQFVAQRQAG--VPPGMCP 63

Regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation.

Drosophila melanogaster (taxid: 7227)

>sp|B4NSP6|WIBG_DROSI Partner of Y14 and mago OS=Drosophila simulans GN=wibg PE=3 SV=2

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 44/56 (78%), Gaps = 3/56 (5%)

Query: 2  GVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQF-ANRQAAQSIPIGLDP 56
          G +I  ++RPDGT+RKA RVK GYVPQ+EVPLYESKGKQF A RQA   +P G+ P
Sbjct: 10 GKFIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKGKQFVAQRQAG--VPPGMCP 63

Regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation.

Drosophila simulans (taxid: 7240)

>sp|Q8CHP5|WIBG_MOUSE Partner of Y14 and mago OS=Mus musculus GN=Wibg PE=1 SV=2

 Score = 71.6 bits (174), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 88/172 (51%), Gaps = 31/172 (18%)

Query: 81  GYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLPPAPSELNFDN 140
           GYVPQ+EVP+YE+K  +F   ++   +P GL P     PV P  P  G      E     
Sbjct: 35  GYVPQEEVPVYENKYVKFF--KSKPELPPGLSP-EATTPVTPSRPEGG------ETGLSK 85

Query: 141 LSPEELEKRIKNLKKKVREITVQVTHPVEMPRQLNLKVSLKPPA--PSELN--------- 189
            +        +NLK+K +    Q      + R L+ KVSL   A  PS L          
Sbjct: 86  TAK-------RNLKRKEKRRQQQEKEAEALSRTLD-KVSLGDTAQIPSALQGPQATPLAA 137

Query: 190 ---FDNLSPEELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRK 238
               D+ +  E  K+IKNL+KK+R+++ L+Q+I++GE+  P ++QLEKL R+
Sbjct: 138 SDPSDSAATTEKAKKIKNLRKKLRQVEELQQRIQAGEVSQPSREQLEKLARR 189

Key regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation. Acts as a EJC disassembly factor, allowing translation-dependent EJC removal and recycling by disrupting mature EJC from spliced mRNAs. Its association with the 40S ribosomal subunit probably prevents a translation-independent disassembly of the EJC from spliced mRNAs, by restricting its activity to mRNAs that have been translated. Interferes with NMD and enhances translation of spliced mRNAs, probably by antagonizing EJC functions.

Mus musculus (taxid: 10090)

>sp|Q7Q6B5|WIBG_ANOGA Partner of Y14 and mago OS=Anopheles gambiae GN=wibg PE=3 SV=4

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 45/60 (75%), Gaps = 3/60 (5%)

Query: 2  GVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKK 61
          G +I  ++RPDGT+RK  RV+ GYVPQ+EVPLYESKGKQFA + A   +P GL P  V+K
Sbjct: 10 GKFIPATQRPDGTWRKPRRVRDGYVPQEEVPLYESKGKQFAQKPA---LPPGLSPEVVQK 66

Regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation.

Anopheles gambiae (taxid: 7165)

>sp|Q640E9|WIBG_XENLA Partner of Y14 and mago OS=Xenopus laevis GN=wibg PE=2 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 64/177 (36%), Positives = 97/177 (54%), Gaps = 15/177 (8%)

Query: 81  GYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLPPAPSELNFD- 139
           GYVPQ+EVP+YE+K  +F   ++  S+P GL     +         P  P A + L+   
Sbjct: 33  GYVPQEEVPVYENKYVKFF--KSKPSLPPGL----CEADGTTGQAQPSKPDADASLSKTA 86

Query: 140 --NLSPEELEKRIKNLKKKVREI--TVQVTHPVEMPRQLNLKVSLKPPAPSELNFDNLSP 195
             NL  +E  K+ K  +++V E    ++  +  + P Q N+  + K  + S  N    S 
Sbjct: 87  KRNLKRKEKRKQEKGEREQVEETRQDLERVNISDTPVQKNVTSAHKNGSASSDN----SA 142

Query: 196 EELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKLSL 252
            E  K+IKNL+KK+R+++ L+QKI+ GEI  P K+QLEKL R+  L  EI  L+L L
Sbjct: 143 AEKAKKIKNLRKKLRQVEELQQKIDCGEIIQPSKEQLEKLARRKALEDEIEDLELDL 199

Key regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation. Acts as a EJC disassembly factor, allowing translation-dependent EJC removal and recycling by disrupting mature EJC from spliced mRNAs. Its association with the 40S ribosomal subunit probably prevents a translation-independent disassembly of the EJC from spliced mRNAs, by restricting its activity to mRNAs that have been translated. Interferes with NMD and enhances translation of spliced mRNAs, probably by antagonizing EJC functions.

Xenopus laevis (taxid: 8355)

>sp|B1WB17|WIBG_XENTR Partner of Y14 and mago OS=Xenopus tropicalis GN=wibg PE=2 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 92/160 (57%), Gaps = 8/160 (5%)

Query: 81  GYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLPPAPSELNFDN 140
           GYVPQ+EVP+YE+K  +F   ++  S+P GL  +        Q   P      S+    N
Sbjct: 33  GYVPQEEVPVYENKYVKFF--KSKPSLPPGLSETDASTGKTQQPSKPDADTTLSKTAKRN 90

Query: 141 LSPEELEKRIKNLKKKVREI--TVQVTHPVEMPRQLNLKVSLKPPAPSELNFDNLSPEEL 198
           +  +E  K+ K  +++V +    ++  +  E P Q NL  + K  + S    DN + E+ 
Sbjct: 91  MKRKEKRKQEKGEREQVEDARQDLERVNISETPVQKNLTSAHKNGSASS---DNPAAEKA 147

Query: 199 EKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRK 238
            K+IKNL+KK+R+++ L+QKI+SGEIK P K+QLEKL R+
Sbjct: 148 -KKIKNLRKKLRQVEELQQKIDSGEIKEPSKEQLEKLSRR 186

Key regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation. Acts as a EJC disassembly factor, allowing translation-dependent EJC removal and recycling by disrupting mature EJC from spliced mRNAs. Its association with the 40S ribosomal subunit probably prevents a translation-independent disassembly of the EJC from spliced mRNAs, by restricting its activity to mRNAs that have been translated. Interferes with NMD and enhances translation of spliced mRNAs, probably by antagonizing EJC functions.

Xenopus tropicalis (taxid: 8364)

>sp|Q9BRP8|WIBG_HUMAN Partner of Y14 and mago OS=Homo sapiens GN=WIBG PE=1 SV=1

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 1  MGVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVK 60
           G YI  ++RPDGT+RK  RVK GYVPQ+EVP+YE+K  +F   +    +P GL P    
Sbjct: 12 TGKYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYVKFFKSKP--ELPPGLSP-EAT 68

Query: 61 KPVNPQNPIPG 71
           PV P  P  G
Sbjct: 69 APVTPSRPEGG 79

Key regulator of the exon junction complex (EJC), a multiprotein complex that associates immediately upstream of the exon-exon junction on mRNAs and serves as a positional landmarks for the intron exon structure of genes and directs post-transcriptional processes in the cytoplasm such as mRNA export, nonsense-mediated mRNA decay (NMD) or translation. Acts as a EJC disassembly factor, allowing translation-dependent EJC removal and recycling by disrupting mature EJC from spliced mRNAs. Its association with the 40S ribosomal subunit probably prevents a translation-independent disassembly of the EJC from spliced mRNAs, by restricting its activity to mRNAs that have been translated. Interferes with NMD and enhances translation of spliced mRNAs, probably by antagonizing EJC functions. May bind RNA; the relevance of RNA-binding remains unclear in vivo, RNA-binding was detected by PubMed:14968132, while PubMed:19410547 did not detect RNA-binding activity independently of the EJC.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
156550757	229	PREDICTED: partner of Y14 and mago-like	0.681	0.794	0.320	3e-17
383857475	217	PREDICTED: partner of Y14 and mago-like	0.715	0.880	0.318	4e-16
114053219	193	partner of Y14 and mago [Bombyx mori] gi	0.640	0.886	0.298	2e-15
242011587	247	conserved hypothetical protein [Pediculu	0.835	0.902	0.303	2e-14
350426366	217	PREDICTED: partner of Y14 and mago-like	0.610	0.751	0.376	9e-13
189239860	178	PREDICTED: similar to Wibg protein [Trib	0.250	0.376	0.547	5e-12
270011886	173	hypothetical protein TcasGA2_TC005977 [T	0.250	0.387	0.547	5e-12
340723674	186	PREDICTED: LOW QUALITY PROTEIN: partner	0.539	0.774	0.357	7e-12
346471813	182	hypothetical protein [Amblyomma maculatu	0.138	0.203	0.586	8e-12
312385489	309	hypothetical protein AND_00721 [Anophele	0.876	0.757	0.300	1e-11

>gi|156550757|ref|XP_001601998.1| PREDICTED: partner of Y14 and mago-like [Nasonia vitripennis]

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 121/278 (43%), Gaps = 96/278 (34%)

Query: 2   GVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHV-- 59
           G +I  S+RPDGT+RK  RVK GYVPQ+EVPLYESKGKQF   + A   P+G+   +V  
Sbjct: 13  GTFIPASQRPDGTWRKPRRVKDGYVPQEEVPLYESKGKQFVKNKPA--YPVGMSAEYVAA 70

Query: 60  ---KKPVNP--QNPIPGLVILD-----------------ADDLGYVP-QDEVPLYESKGK 96
              KK ++    NPIPGLVI                    +DL      D+ P    K +
Sbjct: 71  HKAKKELDTSKSNPIPGLVIQTETKKKKKKGKSKGVAAVTEDLAKTTLSDQAP--SEKKQ 128

Query: 97  QFANRQAAQSIPIGLDPSHVKKPVNP------QNPIPGLPPAPSELNFDNLSPEELEKRI 150
           Q  N +           +  +KP  P      QN  P     P+E    + S  +  KR+
Sbjct: 129 QTTNEKPK---------TQNEKPKTPNEKPKSQNEKPKANDPPAEAANKHTSTTDPLKRL 179

Query: 151 KNLKKKVREITVQVTHPVEMPRQLNLKVSLKPPAPSELNFDNLSPEELEKRIKNLKKKVR 210
           KNL+KK+REI                                                  
Sbjct: 180 KNLRKKIREI-------------------------------------------------- 189

Query: 211 EIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMAL 248
             ++L++KI+SGEIKNP+K+ LEK+ RK ++  EI  L
Sbjct: 190 --ESLDKKIKSGEIKNPDKEMLEKVSRKAEIQQEIKQL 225

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857475|ref|XP_003704230.1| PREDICTED: partner of Y14 and mago-like [Megachile rotundata]

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 118/264 (44%), Gaps = 73/264 (27%)

Query: 2   GVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKK 61
           G +I  S+RPDGT+RK  RVK GY+PQ+EVPLYESKGKQ  N+      PIG  P  + +
Sbjct: 12  GTFIPASQRPDGTWRKPRRVKDGYIPQEEVPLYESKGKQIKNKPM---YPIGASPQFIAE 68

Query: 62  PVNPQNP--------IPGLVILDADDLGYVPQDEVPLYESKGKQFAN------RQAAQSI 107
               Q          IPG V +  +      +++    E   ++ A        Q  +S+
Sbjct: 69  HKAKQEALLAAKSKTIPG-VQVKTEAKKKKKKNKHKASEHITEELAKTTISEPEQKKESL 127

Query: 108 PIGLDPSHVKKPVNPQNPIPGLPPAPSELNFDNLSPEELEKRIKNLKKKVREITVQVTHP 167
           P    P    KPV    P P     P+ LN    S ++ +KR+KNL+KK+REI       
Sbjct: 128 PQNNKPRVDTKPVTNSQPPPS---KPNILNQSEASAQDPQKRLKNLRKKIREI------- 177

Query: 168 VEMPRQLNLKVSLKPPAPSELNFDNLSPEELEKRIKNLKKKVREIKTLEQKIESGEIKNP 227
                                                        +TLE+KI+SG +KNP
Sbjct: 178 ---------------------------------------------ETLEEKIKSGLLKNP 192

Query: 228 EKDQLEKLQRKPDLLSEIMALKLS 251
           EK+ L+KL RK ++ +EI  L+ S
Sbjct: 193 EKEILDKLARKAEISNEIKRLETS 216

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114053219|ref|NP_001040288.1| partner of Y14 and mago [Bombyx mori] gi|121996495|sp|Q2F5J3.1|WIBG_BOMMO RecName: Full=Partner of Y14 and mago; AltName: Full=Protein wibg homolog gi|87248643|gb|ABD36374.1| Wibg protein [Bombyx mori]

 Score = 89.4 bits (220), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 113/255 (44%), Gaps = 84/255 (32%)

Query: 4   YIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPV 63
           +I  ++RPDGT+RK  R+K GYVPQ+EVPLYESKGKQF  RQ    +P+GL P  V +  
Sbjct: 16  FIPATQRPDGTWRKPRRIKEGYVPQEEVPLYESKGKQFRARQ-NDGLPVGLTPEIVAQAQ 74

Query: 64  NPQN------PIPGLVILDADDLGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVK 117
             +       PIPG++I                 E K K+       +     L    ++
Sbjct: 75  KKKGQRSTIQPIPGMII---------------TVEKKKKKKKTVTGVEEAAEKLAKCEIQ 119

Query: 118 KPVNPQNPIPGLPPAPSELNFDNLSPEELEKRIKNLKKKVREITVQVTHPVEMPRQLNLK 177
           +P  P   +P           +++S  +  KR+KNL+KK+REI                 
Sbjct: 120 EPTLPSQSVP----------TESISQSDPTKRLKNLRKKLREIEF--------------- 154

Query: 178 VSLKPPAPSELNFDNLSPEELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQR 237
                                                LE+KI++G +K+P+KDQ EK+ +
Sbjct: 155 -------------------------------------LEEKIKAGLLKSPDKDQKEKMSK 177

Query: 238 KPDLLSEIMALKLSL 252
           K ++L+EI  LK S+
Sbjct: 178 KNEILNEIDILKNSI 192

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011587|ref|XP_002426530.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212510656|gb|EEB13792.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/257 (30%), Positives = 119/257 (46%), Gaps = 34/257 (13%)

Query: 3   VYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHV--- 59
            +I  ++RPDGT+RK  RVK GY+PQ+EVPLYESKGKQ A  ++    P+G         
Sbjct: 7   TFIAATQRPDGTWRKQRRVKDGYIPQEEVPLYESKGKQLA--KSILKYPVGFTEEDYKEA 64

Query: 60  --------KKPVNPQNPIPGLVILDADDLGYVPQDEVPLYESKGKQFANRQAAQSIPIGL 111
                   KK +  QN +        + +    + +    +S G             + +
Sbjct: 65  QARKEKEQKKSLAKQNTVT--TTNSGNIVSTTKKKKKKKSQSNGNTLN--------KVII 114

Query: 112 DPSHVKKPVNPQNPIPGLPPAPSELNFDNLSPEELEKRIKNLKKKVREITVQVTHPVEMP 171
           +     +P N       LP +  +++ +N     +  R KN   KV     Q+      P
Sbjct: 115 EEPEKAQPNNLLTSTSNLPKSVQKVSDENGGWTTVTSRSKNTSTKVSGNQQQIASA---P 171

Query: 172 RQLNLKVSLKPPAPSELNFDNLSPEELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQ 231
            ++N          S+ + D   P    KR+KNLKK++REI  +E+K  SG +K  EK+Q
Sbjct: 172 NKVNKSKKKDETCKSDGSVD---P---NKRVKNLKKRLREIDAIEEKKNSG-VK-LEKEQ 223

Query: 232 LEKLQRKPDLLSEIMAL 248
           LEKL R+ ++L EI  L
Sbjct: 224 LEKLLRRDEVLKEIENL 240

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350426366|ref|XP_003494417.1| PREDICTED: partner of Y14 and mago-like [Bombus impatiens]

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 98/191 (51%), Gaps = 28/191 (14%)

Query: 81  GYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNP--------IPGLP-- 130
           GY+PQ+EVPLYESKGKQ  N+      PIG  P  + +    Q          IPG P  
Sbjct: 34  GYIPQEEVPLYESKGKQIKNKPM---YPIGASPEFIAEHKAKQEALLAAKSKTIPGAPVK 90

Query: 131 ------PAPSELNFDNLSPEELEKRIKNLKKKVREITVQVTHPVEMPRQLNLK-VSLKPP 183
                    S+        EEL K   +   + +E   Q   P     Q N+K VS    
Sbjct: 91  TEVKKKKKKSKNKITERITEELAKTTLSEPDQKKESLSQNGKP-----QTNIKIVSNNQT 145

Query: 184 APSELNFDNLSPEEL---EKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPD 240
           + S+ N    S   +   +KR+KNL+KKVREI+TLE+KI++G +KNPEK+ L+KL RK +
Sbjct: 146 SASKPNGSTQSQTSISDPQKRLKNLRKKVREIETLEEKIKNGLLKNPEKEILDKLARKAE 205

Query: 241 LLSEIMALKLS 251
           +  EI  L+ S
Sbjct: 206 ISKEIKRLEAS 216

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189239860|ref|XP_974312.2| PREDICTED: similar to Wibg protein [Tribolium castaneum]

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 47/73 (64%), Gaps = 6/73 (8%)

Query: 3  VYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKP 62
           +I  S+RPDGT+RKA RVK GYVPQ+EVPLYESKGKQF NR          +P  +   
Sbjct: 18 TFIPASQRPDGTWRKARRVKEGYVPQEEVPLYESKGKQFMNRNTKP------EPVKLSSG 71

Query: 63 VNPQNPIPGLVIL 75
             Q PIPGL I+
Sbjct: 72 ETAQRPIPGLFII 84

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011886|gb|EFA08334.1| hypothetical protein TcasGA2_TC005977 [Tribolium castaneum]

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 47/73 (64%), Gaps = 6/73 (8%)

Query: 3  VYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKP 62
           +I  S+RPDGT+RKA RVK GYVPQ+EVPLYESKGKQF NR          +P  +   
Sbjct: 13 TFIPASQRPDGTWRKARRVKEGYVPQEEVPLYESKGKQFMNRNTKP------EPVKLSSG 66

Query: 63 VNPQNPIPGLVIL 75
             Q PIPGL I+
Sbjct: 67 ETAQRPIPGLFII 79

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723674|ref|XP_003400214.1| PREDICTED: LOW QUALITY PROTEIN: partner of Y14 and mago-like [Bombus terrestris]

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/179 (35%), Positives = 90/179 (50%), Gaps = 35/179 (19%)

Query: 81  GYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNP--------IPGLPPA 132
           GY+PQ+EVPLYESKGKQ  N+      PIG  P  + +    Q          IPG P  
Sbjct: 34  GYIPQEEVPLYESKGKQIKNKPM---YPIGASPEFIAEHKAKQEALLAAKSKTIPGAPVK 90

Query: 133 PSELNFDNLSPEELEKRIKNLKKKVREITVQVTHPVEMPRQLNLKVSLKPPAPSELNFDN 192
                    +  +  +RI        E+                K +L  P   +   ++
Sbjct: 91  TEXQKEKEKNKNKTTERI------TEELA---------------KTTLSEP---DQKKES 126

Query: 193 LSPEELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKLS 251
           LS    +KR+KNL+KKVREI+TLE+KI++G +KNPEK+ L+KL RK ++  EI  L+ S
Sbjct: 127 LSQNNPQKRLKNLRKKVREIETLEEKIKNGLLKNPEKEILDKLARKAEISKEIKRLETS 185

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346471813|gb|AEO35751.1| hypothetical protein [Amblyomma maculatum]

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 43/58 (74%)

Query: 2  GVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHV 59
          G YI  ++RPDGT+RKA RVK GYVPQ+EVPLYESKGK +A  Q+    P+GL  + +
Sbjct: 8  GSYIPATQRPDGTWRKARRVKDGYVPQEEVPLYESKGKLWAKSQSGTKYPVGLSQAEI 65

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385489|gb|EFR29975.1| hypothetical protein AND_00721 [Anopheles darlingi]

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 126/276 (45%), Gaps = 42/276 (15%)

Query: 2   GVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKK 61
           G +I  ++RPDGT+RK  RV+ GYVPQ+EVPLYESKGKQFA + A   +P GL    V+K
Sbjct: 41  GKFIPATQRPDGTWRKPRRVRDGYVPQEEVPLYESKGKQFAQKPA---LPPGLSLEVVQK 97

Query: 62  P----------------VNPQN-PIPGLVILDADDLGYVPQDEVPLYESKGKQFANRQA- 103
                               QN P  G  ++D  D            + KG    N +A 
Sbjct: 98  AKEKRERERLRQQREELRKAQNTPAAGATVVDGAD------------KQKGATAGNGKAR 145

Query: 104 AQSIP----IGLDPSHVKKPVNPQNPIPGLPPAPSELNFDNLSPEELEKRIKNLKKKVRE 159
           ++  P    I LD   +   +    P      A           E+     K      + 
Sbjct: 146 SKKTPELPDILLDYPQLSATIKTAAPSKSSKQAKQAQQQKQPPAEQRSNVAKGAATPAQS 205

Query: 160 ITVQVTHPVEMPRQLNLKVSLKPPAPSELNFDNLSPE---ELEKRIKNLKKKVREIKTLE 216
            T  V    E+   L   V L    P+  N ++   +   +L K+++ L+KK+REI+ +E
Sbjct: 206 ATAAVDE--ELAAALESGVQLSNHTPAGDNSESQQQQQQTDLLKKLRKLRKKIREIEAIE 263

Query: 217 QKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKLSL 252
           +++ + +   P+KDQLEK++RK ++  EI  L+  L
Sbjct: 264 ERLRTNDGPRPDKDQLEKVKRKLEIQREIEGLEAQL 299

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
UNIPROTKB|B0WII7	238	wibg "Partner of Y14 and mago"	0.280	0.315	0.483	4e-26
UNIPROTKB|Q7Q6B5	233	wibg "Partner of Y14 and mago"	0.213	0.244	0.6	4e-26
UNIPROTKB|Q2F5J3	193	wibg "Partner of Y14 and mago"	0.584	0.808	0.387	7.8e-23
UNIPROTKB|Q16LW2	253	wibg "Partner of Y14 and mago"	0.880	0.928	0.321	6.3e-21
UNIPROTKB|B1WB17	200	wibg "Partner of Y14 and mago"	0.621	0.83	0.373	2.7e-20
UNIPROTKB|F1PVD9	203	WIBG "Uncharacterized protein"	0.614	0.807	0.353	2.5e-19
UNIPROTKB|Q9BRP8	204	WIBG "Partner of Y14 and mago"	0.621	0.813	0.357	2.5e-19
UNIPROTKB|F1SPJ0	204	WIBG "Uncharacterized protein"	0.617	0.808	0.361	2.5e-19
UNIPROTKB|A6QPH1	203	WIBG "Partner of Y14 and mago"	0.621	0.817	0.352	6.5e-19
MGI|MGI:1925678	203	Wibg "within bgcn homolog (Dro	0.617	0.812	0.335	2.8e-18

UNIPROTKB|B0WII7 wibg "Partner of Y14 and mago" [Culex quinquefasciatus (taxid:7176)]

 Score = 183 (69.5 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
 Identities = 44/91 (48%), Positives = 56/91 (61%)

Query:     2 GVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKK 61
             G +I  ++RPDGT+RK  RV+ GYVPQ+EVPLYESKGK FA +    S+P GL P   +K
Sbjct:    10 GKFIPATQRPDGTWRKPRRVRDGYVPQEEVPLYESKGKLFAQKP---SLPPGLPPEMAQK 66

Query:    62 P------------VNP-QNPIPGLVILDADD 79
                            P QNP+PGL+IL  D+
Sbjct:    67 AREKREKEQRKAAARPAQNPVPGLLILHEDN 97

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0035145 "exon-exon junction complex" evidence=ISS

UNIPROTKB|Q7Q6B5 wibg "Partner of Y14 and mago" [Anopheles gambiae (taxid:7165)]

 Score = 176 (67.0 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
 Identities = 36/60 (60%), Positives = 45/60 (75%)

Query:     2 GVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKK 61
             G +I  ++RPDGT+RK  RV+ GYVPQ+EVPLYESKGKQFA + A   +P GL P  V+K
Sbjct:    10 GKFIPATQRPDGTWRKPRRVRDGYVPQEEVPLYESKGKQFAQKPA---LPPGLSPEVVQK 66

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0035145 "exon-exon junction complex" evidence=ISS

UNIPROTKB|Q2F5J3 wibg "Partner of Y14 and mago" [Bombyx mori (taxid:7091)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 67/173 (38%), Positives = 104/173 (60%)

Query:    81 GYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLPPAPSELNFDN 140
             GYVPQ+EVPLYESKGKQF  RQ    +P+GL P  V +    +     + P P  +    
Sbjct:    36 GYVPQEEVPLYESKGKQFRARQN-DGLPVGLTPEIVAQAQKKKGQRSTIQPIPGMII--- 91

Query:   141 LSPEELEKRIKNLKKKVREITVQVTHPVEMPRQLNLKVSLKPPAPSE-LNFDNLSPEELE 199
                  +EK+    KKK + +T  V    E   +  ++   +P  PS+ +  +++S  +  
Sbjct:    92 ----TVEKK----KKKKKTVT-GVEEAAEKLAKCEIQ---EPTLPSQSVPTESISQSDPT 139

Query:   200 KRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKLSL 252
             KR+KNL+KK+REI+ LE+KI++G +K+P+KDQ EK+ +K ++L+EI  LK S+
Sbjct:   140 KRLKNLRKKLREIEFLEEKIKAGLLKSPDKDQKEKMSKKNEILNEIDILKNSI 192

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0035145 "exon-exon junction complex" evidence=ISS

UNIPROTKB|Q16LW2 wibg "Partner of Y14 and mago" [Aedes aegypti (taxid:7159)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 81/252 (32%), Positives = 124/252 (49%)

Query:     2 GVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKK 61
             G +I  ++RPDGT+RK  RV+ GYVPQ+EVPLYESKGK FA +     +P G+ P   +K
Sbjct:    10 GKFIPSTQRPDGTWRKPRRVRDGYVPQEEVPLYESKGKLFAQKPL---LPPGMSPEMAQK 66

Query:    62 PVNPQNPIPGLVIL-DADDLGYVPQDEVP-LYESKGKQFANRQAAQSIPIGLDPSHVKKP 119
                 +     +    +AD     PQ+ VP L    G    N Q  Q       P   KK 
Sbjct:    67 SREKREREQRIKQQREADANRRPPQNPVPGLLILNGDSKIN-QPQQRAAKSAKPK--KKA 123

Query:   120 VN-PQNPIPGLPPAPSELNFDNLSPEELEKRIKNLKKKVREITVQVTHPVEMPRQLNLKV 178
             V  P   +        +        ++ +K  KN K   +E   +V   +   +  N  V
Sbjct:   124 VELPDVLLEQKQKEEQKQVRQQQQQQKSQKDHKNTKPHHQERIEEVAKAMNGLQLTNNHV 183

Query:   179 SLKPPAPSELNFDNLSPEELEKRIKNLKKKVREIKTLEQKIESGEI-KNPEKDQLEKLQR 237
             +    A      D L  + L K+++ L+KK+REI+ +E+++ S +    P+KDQ++K +R
Sbjct:   184 ASASAA------DALQTD-LSKKLRKLRKKIREIEIIEERLRSTDGGPRPDKDQIDKAKR 236

Query:   238 KPDLLSEIMALK 249
             KP++L EI  L+
Sbjct:   237 KPEILKEIEELE 248

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0035145 "exon-exon junction complex" evidence=ISS

UNIPROTKB|B1WB17 wibg "Partner of Y14 and mago" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 65/174 (37%), Positives = 99/174 (56%)

Query:    81 GYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLPPAPSELNFDN 140
             GYVPQ+EVP+YE+K  +F   ++  S+P GL  +        Q   P      S+    N
Sbjct:    33 GYVPQEEVPVYENKYVKFF--KSKPSLPPGLSETDASTGKTQQPSKPDADTTLSKTAKRN 90

Query:   141 LSPEELEKRIKNLKKKVREIT--VQVTHPVEMPRQLNLKVSLKPPAPSELNFDNLSPEEL 198
             +  +E  K+ K  +++V +    ++  +  E P Q NL  + K  + S    DN + E+ 
Sbjct:    91 MKRKEKRKQEKGEREQVEDARQDLERVNISETPVQKNLTSAHKNGSASS---DNPAAEKA 147

Query:   199 EKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKLSL 252
              K+IKNL+KK+R+++ L+QKI+SGEIK P K+QLEKL R+  L  EI  L+L L
Sbjct:   148 -KKIKNLRKKLRQVEELQQKIDSGEIKEPSKEQLEKLSRRKALEEEIEDLELDL 200

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0035145 "exon-exon junction complex" evidence=ISS

GO:0043022 "ribosome binding" evidence=ISS

GO:0045727 "positive regulation of translation" evidence=ISS

UNIPROTKB|F1PVD9 WIBG "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 63/178 (35%), Positives = 97/178 (54%)

Query:    81 GYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPI---PGLPP-APSEL 136
             GYVPQ+EVP+YE+K  +F   ++   +P GL P     PV P  P    PGL   A   L
Sbjct:    34 GYVPQEEVPVYENKYVKFF--KSKPELPPGLSPE-ATAPVTPSRPEGGEPGLSKTAKRNL 90

Query:   137 NFDNLSPEELEK-RIKNLKKKVREITV-QVTHPVEMPRQLNLKVSLKPPAPSELNFDNLS 194
                    ++ EK   + L + + ++++ +   P   P+      S   PA +    D+ +
Sbjct:    91 KRKEKRRQQQEKGEAEALSRTLEKVSLGETAQPPSAPQG-----SRAAPAAASDQPDSAA 145

Query:   195 PEELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKLSL 252
               E  K+IKNLKKK+R+++ L+Q+I++GEI  P K+QLEKL R+  L  E+  L+L L
Sbjct:   146 TTEKAKKIKNLKKKLRQVEELQQRIQAGEISQPSKEQLEKLARRRALEEELEDLELGL 203

GO:0045727 "positive regulation of translation" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0035145 "exon-exon junction complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IEA

UNIPROTKB|Q9BRP8 WIBG "Partner of Y14 and mago" [Homo sapiens (taxid:9606)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 63/176 (35%), Positives = 94/176 (53%)

Query:    81 GYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLPPAPSELNFDN 140
             GYVPQ+EVP+YE+K  +F   ++   +P GL P     PV P  P  G  P  S+    N
Sbjct:    35 GYVPQEEVPVYENKYVKFF--KSKPELPPGLSPE-ATAPVTPSRPEGG-EPGLSKTAKRN 90

Query:   141 LSPEELEKRIKNLKKKVREITVQVTHPVEMPRQLNL----KVSLKPPAPSELNFDNLSPE 196
             L  +E  KR +  +K   E   +    V +     L    + S   P  +    D+ +  
Sbjct:    91 LKRKE--KRRQQQEKGEAEALSRTLDKVSLEETAQLPSAPQGSRAAPTAASDQPDSAATT 148

Query:   197 ELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKLSL 252
             E  K+IKNLKKK+R+++ L+Q+I++GE+  P K+QLEKL R+  L  E+  L+L L
Sbjct:   149 EKAKKIKNLKKKLRQVEELQQRIQAGEVSQPSKEQLEKLARRRALEEELEDLELGL 204

GO:0003723 "RNA binding" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0035145 "exon-exon junction complex" evidence=IDA

GO:0043022 "ribosome binding" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045727 "positive regulation of translation" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1SPJ0 WIBG "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 64/177 (36%), Positives = 98/177 (55%)

Query:    81 GYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVN---PQNPIPGLPP-APSEL 136
             GYVPQ+EVP+YE+K  +F   ++   +P GL P     PV    P+   PGL   A   L
Sbjct:    35 GYVPQEEVPVYENKYVKFF--KSKPELPPGLSPE-ATTPVTASRPEGGEPGLSKTAKRNL 91

Query:   137 NFDNLSPEELEK-RIKNLKKKVREITVQVTHPVEMPRQLNLKVSLKPPAPSELNFDNLSP 195
                    ++ EK   + L + + ++T+  T       Q++  V   P A S+   D+ + 
Sbjct:    92 KRKEKRRQQQEKGEAETLSRTLEKVTLGETAQAPSAPQVSRAV---PTAASDQP-DSAAT 147

Query:   196 EELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKLSL 252
              E  K+IKNLKKK+R+++ L+Q+I++GEI  P K+QLEKL R+  L  E+  L+L L
Sbjct:   148 TEKAKKIKNLKKKLRQVEELQQRIQAGEISQPSKEQLEKLARRRALEEELEDLELGL 204

GO:0045727 "positive regulation of translation" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0035145 "exon-exon junction complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=IEA

UNIPROTKB|A6QPH1 WIBG "Partner of Y14 and mago" [Bos taurus (taxid:9913)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 62/176 (35%), Positives = 94/176 (53%)

Query:    81 GYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLPPAPSELNFDN 140
             GYVPQ+EVP+YE+K  +F   ++   +P GL P     P+    P  G  PA S+    N
Sbjct:    34 GYVPQEEVPVYENKYVKFF--KSKPELPPGLSPE-ATAPITASRPEGG-EPALSKTAKRN 89

Query:   141 LSPEELEKRIKNLKKKVREITVQVTHPVEMPRQLNL----KVSLKPPAPSELNFDNLSPE 196
             L  +E  KR +  +K   E   +    V +     +    + S   P  +    D+ +  
Sbjct:    90 LKRKE--KRRQQQEKGEAEALSRTLEKVSLGETAQVPSAPQASRAAPTAASDQPDSAATT 147

Query:   197 ELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKLSL 252
             E  K+IKNLKKK+R+++ L+Q+I++GEI  P K+QLEKL R+  L  E+  L+L L
Sbjct:   148 EKAKKIKNLKKKLRQVEELQQRIQAGEISQPSKEQLEKLARRRALEEELEDLELGL 203

GO:0035145 "exon-exon junction complex" evidence=ISS

GO:0043022 "ribosome binding" evidence=ISS

GO:0045727 "positive regulation of translation" evidence=ISS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

MGI|MGI:1925678 Wibg "within bgcn homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 59/176 (33%), Positives = 97/176 (55%)

Query:    81 GYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPG----LPPAPSEL 136
             GYVPQ+EVP+YE+K  +F   ++   +P GL P     PV P  P  G       A   L
Sbjct:    35 GYVPQEEVPVYENKYVKFF--KSKPELPPGLSPE-ATTPVTPSRPEGGETGLSKTAKRNL 91

Query:   137 NFDNLSPEELEKRIKNLKKKVREITVQVTHPVEMPRQLNLKVSLKPPAPSELNFDNLSPE 196
                    ++ EK  + L + + ++++  T   ++P  L       P A S+ + D+ +  
Sbjct:    92 KRKEKRRQQQEKEAEALSRTLDKVSLGDT--AQIPSALQ-GPQATPLAASDPS-DSAATT 147

Query:   197 ELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKLSL 252
             E  K+IKNL+KK+R+++ L+Q+I++GE+  P ++QLEKL R+  L  E+  L+L L
Sbjct:   148 EKAKKIKNLRKKLRQVEELQQRIQAGEVSQPSREQLEKLARRRVLEEELEDLELGL 203

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006417 "regulation of translation" evidence=IEA

GO:0035145 "exon-exon junction complex" evidence=ISO

GO:0043022 "ribosome binding" evidence=ISO

GO:0045727 "positive regulation of translation" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	267
pfam09282	27	pfam09282, Mago-bind, Mago binding	5e-07

>gnl|CDD|117826 pfam09282, Mago-bind, Mago binding

 Score = 44.9 bits (107), Expect = 5e-07
 Identities = 14/24 (58%), Positives = 18/24 (75%)

Query: 4  YIQPSRRPDGTFRKAIRVKAGYVP 27
           I  ++RPDG+FRK IRV+ GY P
Sbjct: 4  IIPETQRPDGSFRKEIRVRPGYTP 27

Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin. They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
KOG4325|consensus	212		100.0
PF09282	27	Mago-bind: Mago binding; InterPro: IPR015362 Membe	99.53
KOG2315|consensus	566		99.12
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.12
KOG4325|consensus	212		96.43

>KOG4325|consensus

Probab=100.00  E-value=1.8e-35  Score=257.29  Aligned_cols=177  Identities=37%  Similarity=0.546  Sum_probs=128.7

Q ss_pred             cccCCCcCCCCCcccceeccCCCCCCCCcccccchhHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCccccccCcCCC
Q psy12048          3 VYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLVILDADDLGY   82 (267)
Q Consensus         3 ~~i~~s~R~DGt~Rk~~rvr~Gy~p~eev~~y~~~~~~~~k~~~~~~~PPG~~pe~~~~~~~~~~~~~~~~~~~~~~~~~   82 (267)
                      +||.+||||||||||+||||+||+|+|||++|+|++..|++..+.+ +||||+|+.++++ +++.               
T Consensus        20 k~ia~TqRPDGT~RK~~RikeGYtPedEVp~YenK~~kffKek~eq-~PPGlePdaaa~~-kpk~---------------   82 (212)
T KOG4325|consen   20 KIIAPTQRPDGTLRKPIRIKEGYTPEDEVPKYENKGSKFFKEKAEQ-GPPGLEPDAAAKP-KPKA---------------   82 (212)
T ss_pred             eeeccccCCCCccccceeccCCCCchhhhhhhhhhhhHHHhhhhhc-CCCCCCCCCCCCC-CCCc---------------
Confidence            8999999999999999999999999999999999999999998843 7999999977732 2211               


Q ss_pred             CCCCCchhhhhhhhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCChHHHHHHHHhhhHhhhhhhh
Q psy12048         83 VPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPVNPQNPIPGLPPAPSELNFDNLSPEELEKRIKNLKKKVREITV  162 (267)
Q Consensus        83 ~pq~~v~~~~~k~k~~~kr~q~~~~p~g~~~~~~~kp~~~~~~~~gl~ksak~~~~~N~~~~~~krkekrkk~~v~~~~~  162 (267)
                                                             +.-..|||++++++    |     .||++++..+.....++
T Consensus        83 ---------------------------------------~eggEpglsktakR----n-----lKkeek~qaqaEK~eae  114 (212)
T KOG4325|consen   83 ---------------------------------------AEGGEPGLSKTAKR----N-----LKKEEKLQAQAEKAEAE  114 (212)
T ss_pred             ---------------------------------------ccCCCccchhHHHh----h-----hhHHHHHHHHHHhhcch
Confidence                                                   22336899999998    8     88888776643222222


Q ss_pred             -----ccC--CCc----cc---ccccccccCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q psy12048        163 -----QVT--HPV----EM---PRQLNLKVSLKPPAPSELNFDNLSPEELEKRIKNLKKKVREIKTLEQKIESGEIKNPE  228 (267)
Q Consensus       163 -----~~~--~~~----~~---~~~~~~~~~~~~p~~~~~~~~~~~~~e~eKKiRnLkKKLRqIEeLk~K~~sGelk~L~  228 (267)
                           .+.  +++    ++   ..+.+...+.+.|.    ..+....++++||||+|+||||+.|+|++++++|++   +
T Consensus       115 ea~S~sldsqkVnleasa~~~~apqgn~aa~~aA~d----~~dsaa~edkaKkIkaLKKKiR~tEalQQkiaagdl---n  187 (212)
T KOG4325|consen  115 EAGSASLDSQKVNLEASAMEALAPQGNNAACGAAPD----PGDSAAGEDKAKKIKALKKKIRLTEALQQKIAAGDL---N  187 (212)
T ss_pred             hhhccccCccccchhhhhhhccCcccCcccccCCCC----CCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccC---C
Confidence                 111  111    00   11111222221111    123345689999999999999999999999999985   5


Q ss_pred             HHHHHHHhchHHHHHHHHHhhhh
Q psy12048        229 KDQLEKLQRKPDLLSEIMALKLS  251 (267)
Q Consensus       229 ~eQleKl~k~~el~~EL~~Le~~  251 (267)
                      ++|++|+.+..+|+.|++.||..
T Consensus       188 ~~qkEkfeKLaerRa~eeaLED~  210 (212)
T KOG4325|consen  188 PEQKEKFEKLAERRAEEEALEDK  210 (212)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhh
Confidence            78888888888888888888753

>PF09282 Mago-bind: Mago binding; InterPro: IPR015362 Members of this family adopt a structure consisting of a small globular all-beta-domain, with a three-stranded beta-sheet and a contiguous beta-hairpin

Probab=99.53  E-value=1.3e-15  Score=96.96  Aligned_cols=26  Identities=58%  Similarity=1.012  Sum_probs=13.7

Q ss_pred             CcccCCCcCCCCCcccceeccCCCCC
Q psy12048          2 GVYIQPSRRPDGTFRKAIRVKAGYVP   27 (267)
Q Consensus         2 ~~~i~~s~R~DGt~Rk~~rvr~Gy~p   27 (267)
                      .+|||+|+||||||||+||||+||+|
T Consensus         2 er~I~~s~RpDGt~RK~irvr~GY~P   27 (27)
T PF09282_consen    2 ERIIPASQRPDGTWRKEIRVRPGYTP   27 (27)
T ss_dssp             -EEE--EE-TTS-EE--EE--TT---
T ss_pred             ccCcCcccCCCCCcccceeccCCcCC
Confidence            47999999999999999999999998

They bind to Mago alpha-helices via extensive electrostatic interactions and at a beta2-beta3 loop via hydrophobic interactions []. ; GO: 0005515 protein binding; PDB: 1RK8_C.

>KOG2315|consensus

Probab=99.12  E-value=1.4e-10  Score=115.60  Aligned_cols=53  Identities=43%  Similarity=0.690  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHhchHHHHHHHHHhhh
Q psy12048        196 EELEKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMALKL  250 (267)
Q Consensus       196 ~e~eKKiRnLkKKLRqIEeLk~K~~sGelk~L~~eQleKl~k~~el~~EL~~Le~  250 (267)
                      .+.+||||+|.||||.||.||++++.|+  +|+.+||+||+++..|+.||+.|++
T Consensus       514 ~~~ekKir~L~kkLraIe~LK~r~a~Ge--~Le~nQl~kIq~E~~~l~ELk~L~~  566 (566)
T KOG2315|consen  514 SEEEKKIRSLLKKLRAIEALKERMANGE--QLEVNQLNKIQKEPKLLSELKKLGW  566 (566)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhccc--ccCHHHHHHHhhhHHHHHHHHhhcC
Confidence            3889999999999999999999999999  9999999999999999999999974

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.12  E-value=0.00051  Score=69.30  Aligned_cols=48  Identities=38%  Similarity=0.625  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHhchHHHHHHHHHh
Q psy12048        199 EKRIKNLKKKVREIKTLEQKIESGEIKNPEKDQLEKLQRKPDLLSEIMAL  248 (267)
Q Consensus       199 eKKiRnLkKKLRqIEeLk~K~~sGelk~L~~eQleKl~k~~el~~EL~~L  248 (267)
                      +.|||.|-||||.|+.|++++.+||  .|+-.|+.||..+.+++.||+.|
T Consensus       511 e~ki~sl~~~lRaIe~lker~~~~e--ele~~qv~kietee~VlsElk~l  558 (561)
T COG5354         511 EDKIRSLLKKLRAIEALKERMRSGE--ELEVIQVNKIETEEEVLSELKEL  558 (561)
T ss_pred             HHHHHHHHHHhhhhhcchhhccccc--chhhhhhhhhhhHHHHHHHhhhc
Confidence            3499999999999999999999999  99999999999999999999998

>KOG4325|consensus

Probab=96.43  E-value=0.0055  Score=54.73  Aligned_cols=40  Identities=48%  Similarity=0.861  Sum_probs=35.3

Q ss_pred             CCCCCCCCchhhhhhhhhhhhhhhhccCCCCCCCCCCCCCC
Q psy12048         80 LGYVPQDEVPLYESKGKQFANRQAAQSIPIGLDPSHVKKPV  120 (267)
Q Consensus        80 ~~~~pq~~v~~~~~k~k~~~kr~q~~~~p~g~~~~~~~kp~  120 (267)
                      -||+|+|+|..|++|+-.|-+.+. ...||||.|...++|.
T Consensus        40 eGYtPedEVp~YenK~~kffKek~-eq~PPGlePdaaa~~k   79 (212)
T KOG4325|consen   40 EGYTPEDEVPKYENKGSKFFKEKA-EQGPPGLEPDAAAKPK   79 (212)
T ss_pred             CCCCchhhhhhhhhhhhHHHhhhh-hcCCCCCCCCCCCCCC
Confidence            589999999999999999988875 4479999998888877

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	267
1rk8_C	58	Structure Of The Cytosolic Protein Pym Bound To The		3e-12
1rk8_C	58	Structure Of The Cytosolic Protein Pym Bound To The		1e-04

>pdb|1RK8|C Chain C, Structure Of The Cytosolic Protein Pym Bound To The Mago- Y14 Core Of The Exon Junction Complex Length = 58

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 39/47 (82%), Gaps = 1/47 (2%)
Query: 2  GVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQF-ANRQAA 47
          G +I  ++RPDGT+RKA RVK GYVPQ+EVPLYESKGKQF A RQA 
Sbjct: 10 GKFIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKGKQFVAQRQAG 56

>pdb|1RK8|C Chain C, Structure Of The Cytosolic Protein Pym Bound To The Mago- Y14 Core Of The Exon Junction Complex Length = 58

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/25 (84%), Positives = 22/25 (88%), Gaps = 1/25 (4%)
Query: 81  GYVPQDEVPLYESKGKQF-ANRQAA 104
           GYVPQ+EVPLYESKGKQF A RQA 
Sbjct: 32  GYVPQEEVPLYESKGKQFVAQRQAG 56

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	267
1rk8_C	58	PYM protein, within the BGCN gene intron protein,	3e-12

>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1 Length = 58

 Score = 59.4 bits (143), Expect = 3e-12
 Identities = 31/46 (67%), Positives = 38/46 (82%)

Query: 2  GVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQFANRQAA 47
          G +I  ++RPDGT+RKA RVK GYVPQ+EVPLYESKGKQF  ++ A
Sbjct: 10 GKFIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKGKQFVAQRQA 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	267
1rk8_C	58	PYM protein, within the BGCN gene intron protein,	99.85
1rk8_C	58	PYM protein, within the BGCN gene intron protein,	92.14

>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1

Probab=99.85  E-value=1.2e-22  Score=148.26  Aligned_cols=48  Identities=71%  Similarity=1.177  Sum_probs=25.2

Q ss_pred             CcccCCCcCCCCCcccceeccCCCCCCCCcccccchhHH-HHhhccCCCCC
Q psy12048          2 GVYIQPSRRPDGTFRKAIRVKAGYVPQDEVPLYESKGKQ-FANRQAAQSIP   51 (267)
Q Consensus         2 ~~~i~~s~R~DGt~Rk~~rvr~Gy~p~eev~~y~~~~~~-~~k~~~~~~~P   51 (267)
                      ++|||+|+||||||||+||||+||+|||||++|++++++ |.+++.  +||
T Consensus        10 ~~~I~~s~RpDGT~RK~irVr~GY~Pqeev~~Y~~k~~~~~~~r~~--gvp   58 (58)
T 1rk8_C           10 GKFIPATKRPDGTWRKARRVKDGYVPQEEVPLYESKGKQFVAQRQA--GVP   58 (58)
T ss_dssp             EEEECCEECTTSCEECCEECCTTCCC-------------------------
T ss_pred             CEEcccccCCCCccccceeccCCcCCHHHhhhhhhhhhHHHHhhcc--CCC
Confidence            579999999999999999999999999999999999998 566665  565

>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1

Probab=92.14  E-value=0.033  Score=40.66  Aligned_cols=23  Identities=74%  Similarity=1.223  Sum_probs=4.5

Q ss_pred             CCCCCCCCchhhhhhhhhhhhhh
Q psy12048         80 LGYVPQDEVPLYESKGKQFANRQ  102 (267)
Q Consensus        80 ~~~~pq~~v~~~~~k~k~~~kr~  102 (267)
                      .||+||++|.+|+++++++.+..
T Consensus        31 ~GY~Pqeev~~Y~~k~~~~~~~r   53 (58)
T 1rk8_C           31 DGYVPQEEVPLYESKGKQFVAQR   53 (58)
T ss_dssp             TTCCC------------------
T ss_pred             CCcCCHHHhhhhhhhhhHHHHhh
Confidence            69999999999999998865543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	267
d1rk8c_	33	b.72.3.1 (C:) Pym (Within the bgcn gene intron pro	5e-06

>d1rk8c_ b.72.3.1 (C:) Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33

class: All beta proteins
fold: WW domain-like
superfamily: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
family: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
domain: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.3 bits (94), Expect = 5e-06
 Identities = 17/26 (65%), Positives = 21/26 (80%)

Query: 2  GVYIQPSRRPDGTFRKAIRVKAGYVP 27
          G +I  ++RPDGT+RKA RVK GYVP
Sbjct: 8  GKFIPATKRPDGTWRKARRVKDGYVP 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	267
d1rk8c_	33	Pym (Within the bgcn gene intron protein, WIBG), N	99.51

>d1rk8c_ b.72.3.1 (C:) Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
family: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
domain: Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=1.2e-15  Score=97.76  Aligned_cols=26  Identities=65%  Similarity=1.182  Sum_probs=25.4

Q ss_pred             CcccCCCcCCCCCcccceeccCCCCC
Q psy12048          2 GVYIQPSRRPDGTFRKAIRVKAGYVP   27 (267)
Q Consensus         2 ~~~i~~s~R~DGt~Rk~~rvr~Gy~p   27 (267)
                      |.|||+||||||||||++||++||||
T Consensus         8 G~~i~atqRpDGtWRK~rrvk~gyvP   33 (33)
T d1rk8c_           8 GKFIPATKRPDGTWRKARRVKDGYVP   33 (33)
T ss_dssp             EEEECCEECTTSCEECCEECCTTCCC
T ss_pred             CcEeccccCCCCccccceecccCcCC
Confidence            78999999999999999999999998