Psyllid ID: psy12053

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MSKNPKTSKAVNTRPRPNTVLTGGGYWGSRPPSPSGGDNASETSSVMPPPPPQQTQRPKSRAESKYDNLSYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDGVRILTLDELEDNASYVVSSYKTFKVRFYPFVFTYLLVRG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccEEEEEccccccccHHHHHHHHHccccccccccEEEcccccccccHHHHccccEEEEEcccccccccccEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccEEEEEEEEccccccccEEEEEccccccccHHHHHHHHHccccccccEEEEEcccccEEccHHHHcccccEEEEcccccccccccEEEEEEEEcc
Coil and Loop (DISEMBL)
msknpktskavntrprpntvltgggywgsrppspsggdnasetssvmpppppqqtqrpksraeskydnlSYWRARKVtffkngdpyfpgveyrfkpgrdipslEALQDKLSvrmdlprgaryvfsmdgvriltldelednASYVVSSyktfkvrfYPFVFTYLLVRG
Flexible Loop (DISEMBL)
msknpktskavntrprpntvltgggywgsrPPSPSGGDNASEtssvmpppppqqtqrpksraeskydnlsyWRARKvtffkngdpyfPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDGVRILTLDELEDNASYVVssyktfkvrFYPFVFTYLLVRG
Low Complexity Region (SEG)
MSKNPKTSKAVNTRPRPNTVLTGGGYWGSRPPSPSGGDNASETSSVMpppppqqtqrpKSRAESKYDNLSYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDGVRILTLDELEDNASYVVSSYKTFKVRFYPFVFTYLLVRG
Disordered region (IsUnstruct)
******************************************************************DNLSYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDGVRILTLDELEDNASYVVSSYKTFKVRFYPFVFTYLLV**
Disordered Region (DISOPRED)
***************************************************************************KVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDGVRILTLDELEDNASYVVSSYKTFKVRFYPFVFTYLLVR*
Disordered Region (DISEMBL)
************TRPRPNTVLTGGGYWGSR***********************************YDNLSYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDGVRILTLDELEDNASYVVSSYKTFKVRFYPFVFTYLLVRG
Disordered Region (DISPRO)
*******************************************************************NLSYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDGVRILTLDELEDNASYVVSSYKTFKVRFYPFVFTYLLVRG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKNPKTSKAVNTRPRPNTVLTGGGYWGSRPPSPSGGDNASETSSVMPPPPPQQTQRPKSRAESKYDNLSYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDGVRILTLDELEDNASYVVSSYKTFKVRFYPFVFTYLLVRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
Q9VUI3	1076	Echinoderm microtubule-as	yes	N/A	0.742	0.115	0.606	3e-35
Q95QC4	802	Serine/threonine-protein	yes	N/A	0.730	0.152	0.331	7e-11
O43602	441	Neuronal migration protei	yes	N/A	0.473	0.179	0.435	2e-10
O88809	366	Neuronal migration protei	yes	N/A	0.473	0.215	0.435	2e-10
O15075	740	Serine/threonine-protein	no	N/A	0.473	0.106	0.411	2e-09
Q9JLM8	756	Serine/threonine-protein	no	N/A	0.473	0.104	0.411	2e-09
Q9ESI7	365	Neuronal migration protei	yes	N/A	0.473	0.216	0.423	2e-09
Q8MJ04	2141	Oxygen-regulated protein	no	N/A	0.431	0.033	0.432	7e-08
D2I3C6	784	Serine/threonine-protein	no	N/A	0.473	0.100	0.364	2e-07
P56716	2095	Oxygen-regulated protein	no	N/A	0.502	0.040	0.379	2e-07

>sp|Q9VUI3|EMAL_DROME Echinoderm microtubule-associated protein-like CG42247 OS=Drosophila melanogaster GN=DCX-EMAP PE=2 SV=3

 Score =  147 bits (371), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 77/127 (60%), Positives = 95/127 (74%), Gaps = 3/127 (2%)

Query: 29  SRPPSPSGGDNASETSSVMPPPPPQQTQ-RPK--SRAESKYDNLSYWRARKVTFFKNGDP 85
           SR  SP   DN SE S   P  P  +++ RP+  S A S+Y+NLSYW+AR+V F++NGDP
Sbjct: 122 SRAISPGYLDNMSENSEQPPVVPLVRSKSRPEISSAAASRYNNLSYWKARRVVFYRNGDP 181

Query: 86  YFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDGVRILTLDELEDNASYVV 145
           +FPGVE R++PGRD+ SL+ L DK+S +MDLPRGARYVFSMDG R   LDELED A YVV
Sbjct: 182 FFPGVELRYRPGRDVTSLDNLLDKISPKMDLPRGARYVFSMDGDRKYHLDELEDGAFYVV 241

Query: 146 SSYKTFK 152
           SS+K FK
Sbjct: 242 SSFKAFK 248

May modify the assembly dynamics of microtubules, such that microtubules are slightly longer, but more dynamic.
Drosophila melanogaster (taxid: 7227)

>sp|Q95QC4|DCLK_CAEEL Serine/threonine-protein kinase zyg-8 OS=Caenorhabditis elegans GN=zyg-8 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 23/145 (15%)

Query: 28  GSRPPSPSGGDNASETSSVMPPPPP--------------QQTQRPKSRAESKYDNLSYWR 73
           GS P S +    AS TSSV                     + QR      S Y +L   +
Sbjct: 152 GSMPNSGTNTAEASMTSSVCAMETEGTNGDELAESRDMVSEMQRRCRIGPSGYPHL--LK 209

Query: 74  ARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKL--SVRMD---LPRGARYVFSMDG 128
           A+++ F++NGD YF G++Y  +  R + S++ L + L  +V  D   LP G R++F++DG
Sbjct: 210 AKRLRFYRNGDQYFKGIQYALQSDR-VKSMQPLMEDLMKTVICDSTALPHGIRHIFTIDG 268

Query: 129 V-RILTLDELEDNASYVVSSYKTFK 152
             RI ++D+ ED   YV SS   FK
Sbjct: 269 AQRITSVDQFEDGGGYVCSSTDAFK 293

Plays a role in spindle positioning during asymmetric division of one-cell stage embryos. Affects spindle position by promoting microtubule assembly during anaphase.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O43602|DCX_HUMAN Neuronal migration protein doublecortin OS=Homo sapiens GN=DCX PE=1 SV=3

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 6/85 (7%)

Query: 73  RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEA----LQDKLSVRMDLPRGARYVFSMDG 128
           +A+KV F++NGD YF G+ Y     R   S +A    L   LS  ++LP+G RY++++DG
Sbjct: 132 KAKKVRFYRNGDRYFKGIVYAVSSDR-FRSFDALLADLTRSLSDNINLPQGVRYIYTIDG 190

Query: 129 VR-ILTLDELEDNASYVVSSYKTFK 152
            R I ++DELE+  SYV SS   FK
Sbjct: 191 SRKIGSMDELEEGESYVCSSDNFFK 215

Microtubule-associated protein required for initial steps of neuronal dispersion and cortex lamination during cerebral cortex development. May act by competing with the putative neuronal protein kinase DCAMKL1 in binding to a target protein. May in that way participate in a signaling pathway that is crucial for neuronal interaction before and during migration, possibly as part of a calcium ion-dependent signal transduction pathway. May be part with LIS-1 of a overlapping, but distinct, signaling pathways that promote neuronal migration.

Homo sapiens (taxid: 9606)

>sp|O88809|DCX_MOUSE Neuronal migration protein doublecortin OS=Mus musculus GN=Dcx PE=1 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 6/85 (7%)

Query: 73  RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEA----LQDKLSVRMDLPRGARYVFSMDG 128
           +A+KV F++NGD YF G+ Y     R   S +A    L   LS  ++LP+G RY++++DG
Sbjct: 51  KAKKVRFYRNGDRYFKGIVYAVSSDR-FRSFDALLADLTRSLSDNINLPQGVRYIYTIDG 109

Query: 129 VR-ILTLDELEDNASYVVSSYKTFK 152
            R I ++DELE+  SYV SS   FK
Sbjct: 110 SRKIGSMDELEEGESYVCSSDNFFK 134

Microtubule-associated protein required for initial steps of neuronal dispersion and cortex lamination during cerebral cortex development. May act by competing with the putative neuronal protein kinase DCAMKL1 in binding to a target protein. May in that way participate in a signaling pathway that is crucial for neuronal interaction before and during migration, possibly as part of a calcium ion-dependent signal transduction pathway. May be part with LIS-1 of a overlapping, but distinct, signaling pathways that promote neuronal migration.

Mus musculus (taxid: 10090)

>sp|O15075|DCLK1_HUMAN Serine/threonine-protein kinase DCLK1 OS=Homo sapiens GN=DCLK1 PE=1 SV=2

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 6/85 (7%)

Query: 73  RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEA----LQDKLSVRMDLPRGARYVFSMDG 128
           +A+KV F++NGD YF G+ Y   P R   S EA    L   LS  ++LP+G R ++++DG
Sbjct: 55  KAKKVRFYRNGDRYFKGIVYAISPDR-FRSFEALLADLTRTLSDNVNLPQGVRTIYTIDG 113

Query: 129 V-RILTLDELEDNASYVVSSYKTFK 152
           + +I +LD+L +  SYV  S + FK
Sbjct: 114 LKKISSLDQLVEGESYVCGSIEPFK 138

Probable kinase that may be involved in a calcium-signaling pathway controlling neuronal migration in the developing brain. May also participate in functions of the mature nervous system.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9JLM8|DCLK1_MOUSE Serine/threonine-protein kinase DCLK1 OS=Mus musculus GN=Dclk1 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 6/85 (7%)

Query: 73  RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEA----LQDKLSVRMDLPRGARYVFSMDG 128
           +A+KV F++NGD YF G+ Y   P R   S EA    L   LS  ++LP+G R ++++DG
Sbjct: 55  KAKKVRFYRNGDRYFKGIVYAISPDR-FRSFEALLADLTRTLSDNVNLPQGVRTIYTIDG 113

Query: 129 V-RILTLDELEDNASYVVSSYKTFK 152
           + +I +LD+L +  SYV  S + FK
Sbjct: 114 LKKISSLDQLVEGESYVCGSIEPFK 138

Probable kinase that may be involved in a calcium-signaling pathway controlling neuronal migration in the developing brain. May also participate in functions of the mature nervous system.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ESI7|DCX_RAT Neuronal migration protein doublecortin OS=Rattus norvegicus GN=Dcx PE=1 SV=2

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 6/85 (7%)

Query: 73  RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEA----LQDKLSVRMDLPRGARYVFSMDG 128
           +A+KV F++NGD YF G+ Y     R   S +A    L   LS  ++L +G RY++++DG
Sbjct: 51  KAKKVRFYRNGDRYFKGIVYAVSSDR-FRSFDALLADLTRSLSDNINLLQGVRYIYTIDG 109

Query: 129 VR-ILTLDELEDNASYVVSSYKTFK 152
            R I ++DELE+  SYV SS   FK
Sbjct: 110 SRKIGSMDELEEGESYVCSSDNFFK 134

Microtubule-associated protein required for initial steps of neuronal dispersion and cortex lamination during cerebral cortex development. May act by competing with the putative neuronal protein kinase DCAMKL1 in binding to a target protein. May in that way participate in a signaling pathway that is crucial for neuronal interaction before and during migration, possibly as part of a calcium ion-dependent signal transduction pathway. May be part with LIS-1 of a overlapping, but distinct, signaling pathways that promote neuronal migration.

Rattus norvegicus (taxid: 10116)

>sp|Q8MJ04|RP1_CANFA Oxygen-regulated protein 1 OS=Canis familiaris GN=RP1 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/74 (43%), Positives = 47/74 (63%), Gaps = 2/74 (2%)

Query: 74  ARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDGVRILT 133
           A+K++F+K+GDP F GV+    P R   + +AL D LS ++ LP G R + +  G   +T
Sbjct: 33  AKKISFYKSGDPQFGGVKVVVNP-RSFKTFDALLDNLSRKVPLPFGVRNISTPRGRHSIT 91

Query: 134 -LDELEDNASYVVS 146
            L+ELED ASY+ S
Sbjct: 92  RLEELEDGASYLCS 105

Microtubule-associated protein regulating the stability and length of the microtubule-based axoneme of photoreceptors. Required for the differentiation of photoreceptor cells, it plays a role in the organization of the outer segment of rod and cone photoreceptors ensuring the correct orientation and higher order stacking of outer segment disks along the photoreceptor axoneme.

Canis familiaris (taxid: 9615)

>sp|D2I3C6|DCLK2_AILME Serine/threonine-protein kinase DCLK2 OS=Ailuropoda melanoleuca GN=DCLK2 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 6/85 (7%)

Query: 73  RARKVTFFKNGDPYFPGVEYRFKPGR----DIPSLEALQDKLSVRMDLPRGARYVFSMDG 128
           +A+K  F++NGD YF G+ +     R    D   +E L   LS  ++LP+G R ++++DG
Sbjct: 70  KAKKARFYRNGDRYFKGLVFAISSDRFRSFDALLME-LTRSLSDNVNLPQGVRTIYTIDG 128

Query: 129 VR-ILTLDELEDNASYVVSSYKTFK 152
            R + +LDEL +  SYV +S + F+
Sbjct: 129 SRKVTSLDELLEGESYVCASNEPFR 153

Protein kinase with a significantly reduced Ca(2+)/CAM affinity and dependence compared to other members of the CaMK family. May play a role in the down-regulation of CRE-dependent gene activation probably by phosphorylation of the CREB coactivator CRTC2/TORC2 and the resulting retention of TORC2 in the cytoplasm.

Ailuropoda melanoleuca (taxid: 9646)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P56716|RP1_MOUSE Oxygen-regulated protein 1 OS=Mus musculus GN=Rp1 PE=1 SV=2

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 3/87 (3%)

Query: 65  KYDNLSY-WRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYV 123
           ++ N+++   A++++F+K+GDP F GV     P R   + +AL D LS ++ LP G R +
Sbjct: 24  RHSNITHPVVAKRISFYKSGDPQFGGVRVVVNP-RSFKTFDALLDSLSRKVPLPFGVRNI 82

Query: 124 FSMDGVRILT-LDELEDNASYVVSSYK 149
            +  G   +T L+ELED  SYV S  K
Sbjct: 83  STPRGRHSITRLEELEDGKSYVCSHNK 109

Microtubule-associated protein regulating the stability and length of the microtubule-based axoneme of photoreceptors. Required for the differentiation of photoreceptor cells, it plays a role in the organization of the outer segment of rod and cone photoreceptors ensuring the correct orientation and higher order stacking of outer segment disks along the photoreceptor axoneme.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
189241016	1049	PREDICTED: similar to IP09257p [Triboliu	0.754	0.120	0.676	8e-44
270013830	208	hypothetical protein TcasGA2_TC012482 [T	0.766	0.615	0.678	4e-43
328716981	1039	PREDICTED: echinoderm microtubule-associ	0.760	0.122	0.666	4e-42
307182106	274	Neuronal migration protein doublecortin	0.598	0.364	0.757	1e-39
380016030	955	PREDICTED: echinoderm microtubule-associ	0.598	0.104	0.766	3e-39
383860506	1141	PREDICTED: echinoderm microtubule-associ	0.598	0.087	0.757	4e-39
350414903	1032	PREDICTED: echinoderm microtubule-associ	0.598	0.096	0.757	7e-39
340722066	1078	PREDICTED: echinoderm microtubule-associ	0.598	0.092	0.747	1e-38
242004756	179	conserved hypothetical protein [Pediculu	0.700	0.653	0.643	2e-36
195378454	299	GJ11598 [Drosophila virilis] gi|19415515	0.808	0.451	0.582	1e-34

>gi|189241016|ref|XP_969211.2| PREDICTED: similar to IP09257p [Tribolium castaneum]

 Score =  181 bits (460), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 94/139 (67%), Positives = 109/139 (78%), Gaps = 13/139 (9%)

Query: 24  GGYW---GSRPPSPSGGDNASETSSVMPPPPPQQTQRPKSRAE---SKYDNLSYWRARKV 77
           GGYW    SR  SP+ GDNAS+ SS++PP       RPKSR E   S+Y+NLSYW+AR+V
Sbjct: 101 GGYWRQGASRAASPAMGDNASD-SSMIPPA------RPKSRVEMTTSRYNNLSYWKARRV 153

Query: 78  TFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDGVRILTLDEL 137
            F+KNGDP+FPG+E+RFKPGRDI SLE+L DKLS+RMDLPRGARY+FSMDG R   LDEL
Sbjct: 154 LFYKNGDPFFPGIEFRFKPGRDIVSLESLLDKLSLRMDLPRGARYIFSMDGDRKYRLDEL 213

Query: 138 EDNASYVVSSYKTFKVRFY 156
           ED ASYVVSSYKTFK   Y
Sbjct: 214 EDGASYVVSSYKTFKAASY 232

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013830|gb|EFA10278.1| hypothetical protein TcasGA2_TC012482 [Tribolium castaneum]

 Score =  179 bits (453), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 112/143 (78%), Gaps = 15/143 (10%)

Query: 17  PNTVLTGGGYW---GSRPPSPSGGDNASETSSVMPPPPPQQTQRPKSRAE---SKYDNLS 70
           PN V   GGYW    SR  SP+ GDNAS+ SS++PP       RPKSR E   S+Y+NLS
Sbjct: 70  PNPV--NGGYWRQGASRAASPAMGDNASD-SSMIPP------ARPKSRVEMTTSRYNNLS 120

Query: 71  YWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDGVR 130
           YW+AR+V F+KNGDP+FPG+E+RFKPGRDI SLE+L DKLS+RMDLPRGARY+FSMDG R
Sbjct: 121 YWKARRVLFYKNGDPFFPGIEFRFKPGRDIVSLESLLDKLSLRMDLPRGARYIFSMDGDR 180

Query: 131 ILTLDELEDNASYVVSSYKTFKV 153
              LDELED ASYVVSSYKTFKV
Sbjct: 181 KYRLDELEDGASYVVSSYKTFKV 203

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328716981|ref|XP_001947946.2| PREDICTED: echinoderm microtubule-associated protein-like CG42247-like [Acyrthosiphon pisum]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 88/132 (66%), Positives = 103/132 (78%), Gaps = 5/132 (3%)

Query: 24  GGYWGSRPPSPS---GGDNASETSSVMPPPPPQQTQRPKSRAESKYDNLSYWRARKVTFF 80
            GYW S P S +   G DN SETSSVMP P P         A+ KY++LSYW+ARKVTFF
Sbjct: 80  AGYWQSVPNSRAASPGNDNGSETSSVMPAPVPGLA--ASRVAKDKYNHLSYWKARKVTFF 137

Query: 81  KNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDGVRILTLDELEDN 140
           KNGD YFPG+E RF+PGRDI +LEAL DKLS RMDLPRGARY+FSMDG R+++LD+LED+
Sbjct: 138 KNGDLYFPGLELRFRPGRDIGNLEALLDKLSSRMDLPRGARYLFSMDGGRVVSLDQLEDD 197

Query: 141 ASYVVSSYKTFK 152
            SYVVSSYK+FK
Sbjct: 198 QSYVVSSYKSFK 209

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182106|gb|EFN69470.1| Neuronal migration protein doublecortin [Camponotus floridanus]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/103 (75%), Positives = 92/103 (89%), Gaps = 3/103 (2%)

Query: 53  QQTQRPKSRAE---SKYDNLSYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDK 109
           +Q+ RPKSR E   ++Y+NL YWRAR+VTF++NGDPYFPGVE+RFKPGRDI SLEAL D+
Sbjct: 160 EQSSRPKSRHELQAARYNNLGYWRARRVTFYRNGDPYFPGVEFRFKPGRDIGSLEALLDR 219

Query: 110 LSVRMDLPRGARYVFSMDGVRILTLDELEDNASYVVSSYKTFK 152
           LS+RMDLPRGAR++FSMDG R L+LDELED ASYVVSSYKTFK
Sbjct: 220 LSLRMDLPRGARHIFSMDGDRKLSLDELEDGASYVVSSYKTFK 262

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016030|ref|XP_003691996.1| PREDICTED: echinoderm microtubule-associated protein-like CG42247-like [Apis florea]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/103 (76%), Positives = 90/103 (87%), Gaps = 3/103 (2%)

Query: 53  QQTQRPKSRAE---SKYDNLSYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDK 109
           Q   RPKSR E   ++Y+NL YWRAR+VTF+KNGDPYFPG+E+RFKPGRDI SLEAL D+
Sbjct: 20  QPEHRPKSRHEPAPARYNNLGYWRARRVTFYKNGDPYFPGIEFRFKPGRDIGSLEALLDR 79

Query: 110 LSVRMDLPRGARYVFSMDGVRILTLDELEDNASYVVSSYKTFK 152
           LS+RMDLPRGAR++FSMDG R LTLDELED ASYVVSSYKTFK
Sbjct: 80  LSLRMDLPRGARHIFSMDGDRKLTLDELEDGASYVVSSYKTFK 122

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860506|ref|XP_003705730.1| PREDICTED: echinoderm microtubule-associated protein-like CG42247-like [Megachile rotundata]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 78/103 (75%), Positives = 90/103 (87%), Gaps = 3/103 (2%)

Query: 53  QQTQRPKSRAE---SKYDNLSYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDK 109
           Q   RPKSR E   ++Y+NL YWRAR+VTF+KNGDPYFPG+E+RFKPGRDI SLEAL D+
Sbjct: 214 QPEHRPKSRHEPAPARYNNLGYWRARRVTFYKNGDPYFPGIEFRFKPGRDIGSLEALLDR 273

Query: 110 LSVRMDLPRGARYVFSMDGVRILTLDELEDNASYVVSSYKTFK 152
           LS+RMDLPRGAR++FSMDG R +TLDELED ASYVVSSYKTFK
Sbjct: 274 LSLRMDLPRGARHIFSMDGDRKITLDELEDGASYVVSSYKTFK 316

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414903|ref|XP_003490463.1| PREDICTED: echinoderm microtubule-associated protein-like CG42247-like [Bombus impatiens]

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 78/103 (75%), Positives = 90/103 (87%), Gaps = 3/103 (2%)

Query: 53  QQTQRPKSRAE---SKYDNLSYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDK 109
           Q   RPKSR E   ++Y+NL YWRAR+VTF+KNGDPYFPG+E+RFKPGRDI SLEAL D+
Sbjct: 108 QPEHRPKSRHEPAPARYNNLGYWRARRVTFYKNGDPYFPGIEFRFKPGRDIGSLEALLDR 167

Query: 110 LSVRMDLPRGARYVFSMDGVRILTLDELEDNASYVVSSYKTFK 152
           LS+RMDLPRGAR++FSMDG R LTLDELED ASYVVSSYK+FK
Sbjct: 168 LSLRMDLPRGARHIFSMDGDRKLTLDELEDGASYVVSSYKSFK 210

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722066|ref|XP_003399431.1| PREDICTED: echinoderm microtubule-associated protein-like CG42247-like [Bombus terrestris]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/103 (74%), Positives = 90/103 (87%), Gaps = 3/103 (2%)

Query: 53  QQTQRPKSRAE---SKYDNLSYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDK 109
           Q   RP+SR E   ++Y+NL YWRAR+VTF+KNGDPYFPG+E+RFKPGRDI SLEAL D+
Sbjct: 154 QPEHRPRSRHEPAPARYNNLGYWRARRVTFYKNGDPYFPGIEFRFKPGRDIGSLEALLDR 213

Query: 110 LSVRMDLPRGARYVFSMDGVRILTLDELEDNASYVVSSYKTFK 152
           LS+RMDLPRGAR++FSMDG R LTLDELED ASYVVSSYK+FK
Sbjct: 214 LSLRMDLPRGARHIFSMDGDRKLTLDELEDGASYVVSSYKSFK 256

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004756|ref|XP_002423244.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212506230|gb|EEB10506.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  156 bits (395), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/129 (64%), Positives = 100/129 (77%), Gaps = 12/129 (9%)

Query: 29  SRPPSPSGG--DNASETSSVMPPPPPQQTQRPKSRAE--SKYDNLSYWRARKVTFFKNGD 84
           SRP SP GG  D  SE+SS MPP       RPKSR +  +KY+NLSYWRA+K+ F+KNGD
Sbjct: 29  SRPASPGGGMNDGGSESSS-MPP-------RPKSRPDHSAKYNNLSYWRAKKLVFYKNGD 80

Query: 85  PYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDGVRILTLDELEDNASYV 144
           P+FPG+E+RFKPGRD+ SL+ + DKLS+R+DLP GARY+FSMDG R   L+ELED  SYV
Sbjct: 81  PFFPGLEFRFKPGRDVGSLDGILDKLSLRLDLPYGARYIFSMDGERKTRLEELEDGNSYV 140

Query: 145 VSSYKTFKV 153
           VSSYKTFK 
Sbjct: 141 VSSYKTFKT 149

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195378454|ref|XP_002047999.1| GJ11598 [Drosophila virilis] gi|194155157|gb|EDW70341.1| GJ11598 [Drosophila virilis]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/139 (58%), Positives = 102/139 (73%), Gaps = 4/139 (2%)

Query: 29  SRPPSPSGGDNASETSSVMPPPPPQQTQ-RPK--SRAESKYDNLSYWRARKVTFFKNGDP 85
           SR  SPS  +N SE S   P  P  +++ RP+  S A S+Y NLSYW+AR+V F++NGDP
Sbjct: 153 SRTLSPSYLENMSENSEQPPVVPLVRSKSRPEISSAAASRYSNLSYWKARRVVFYRNGDP 212

Query: 86  YFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDGVRILTLDELEDNASYVV 145
           +FPGVE R++PGRD+ SL+ L DK+S +MDLPRGARYVFSMDG R   LDELED A YVV
Sbjct: 213 FFPGVELRYRPGRDVTSLDNLLDKISPKMDLPRGARYVFSMDGDRKYHLDELEDGAFYVV 272

Query: 146 SSYKTFKVRF-YPFVFTYL 163
           SS+K FKV F + F+ T +
Sbjct: 273 SSFKAFKVSFIFYFIMTCI 291

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
FB|FBgn0259099	1076	DCX-EMAP "Doublecortin-domain-	0.766	0.118	0.572	3.4e-32
UNIPROTKB|K7GKM3	216	LOC100523160 "Uncharacterized	0.473	0.365	0.447	1e-11
UNIPROTKB|F1RWU2	286	LOC100523160 "Uncharacterized	0.473	0.276	0.447	2.2e-11
UNIPROTKB|G3MYK0	315	DCX "Uncharacterized protein"	0.473	0.250	0.447	3.1e-11
UNIPROTKB|E1BBU3	357	DCX "Uncharacterized protein"	0.473	0.221	0.447	4.4e-11
UNIPROTKB|F1NRR4	361	DCX "Uncharacterized protein"	0.473	0.218	0.447	4.5e-11
UNIPROTKB|J9NT27	361	DCX "Uncharacterized protein"	0.473	0.218	0.447	4.5e-11
UNIPROTKB|K7GL04	365	LOC100523160 "Uncharacterized	0.473	0.216	0.447	4.7e-11
MGI|MGI:1277171	366	Dcx "doublecortin" [Mus muscul	0.473	0.215	0.447	4.7e-11
UNIPROTKB|K7GQ57	420	LOC100523160 "Uncharacterized	0.473	0.188	0.447	6.4e-11

FB|FBgn0259099 DCX-EMAP "Doublecortin-domain-containing echinoderm-microtubule-associated protein ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 364 (133.2 bits), Expect = 3.4e-32, P = 3.4e-32
 Identities = 75/131 (57%), Positives = 90/131 (68%)

Query:    29 SRPPSPSGGDNASETSS---VMXXXXXXXXXXXKSRAESKYDNLSYWRARKVTFFKNGDP 85
             SR  SP   DN SE S    V+            S A S+Y+NLSYW+AR+V F++NGDP
Sbjct:   122 SRAISPGYLDNMSENSEQPPVVPLVRSKSRPEISSAAASRYNNLSYWKARRVVFYRNGDP 181

Query:    86 YFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDGVRILTLDELEDNASYVV 145
             +FPGVE R++PGRD+ SL+ L DK+S +MDLPRGARYVFSMDG R   LDELED A YVV
Sbjct:   182 FFPGVELRYRPGRDVTSLDNLLDKISPKMDLPRGARYVFSMDGDRKYHLDELEDGAFYVV 241

Query:   146 SSYKTFKVRFY 156
             SS+K FK   Y
Sbjct:   242 SSFKAFKPASY 252

GO:0008017 "microtubule binding" evidence=ISS;IDA;NAS

GO:0007017 "microtubule-based process" evidence=NAS

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0071683 "sensory dendrite" evidence=IDA

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0035011 "melanotic encapsulation of foreign target" evidence=IMP

UNIPROTKB|K7GKM3 LOC100523160 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 38/85 (44%), Positives = 54/85 (63%)

Query:    73 RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEAL-QD---KLSVRMDLPRGARYVFSMDG 128
             +A+KV F++NGD YF G+ Y     R   S +AL  D    LS  ++LP+G RY++++DG
Sbjct:    51 KAKKVRFYRNGDRYFKGIVYAVSSDR-FRSFDALLADLTRSLSDNINLPQGVRYIYTIDG 109

Query:   129 VR-ILTLDELEDNASYVVSSYKTFK 152
              R I ++DELE+  SYV SS   FK
Sbjct:   110 SRKIGSMDELEEGESYVCSSDNFFK 134

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|F1RWU2 LOC100523160 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 159 (61.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 38/85 (44%), Positives = 54/85 (63%)

Query:    73 RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEAL-QD---KLSVRMDLPRGARYVFSMDG 128
             +A+KV F++NGD YF G+ Y     R   S +AL  D    LS  ++LP+G RY++++DG
Sbjct:     5 KAKKVRFYRNGDRYFKGIVYAVSSDR-FRSFDALLADLTRSLSDNINLPQGVRYIYTIDG 63

Query:   129 VR-ILTLDELEDNASYVVSSYKTFK 152
              R I ++DELE+  SYV SS   FK
Sbjct:    64 SRKIGSMDELEEGESYVCSSDNFFK 88

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|G3MYK0 DCX "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 3.1e-11, P = 3.1e-11
 Identities = 38/85 (44%), Positives = 54/85 (63%)

Query:    73 RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEAL-QD---KLSVRMDLPRGARYVFSMDG 128
             +A+KV F++NGD YF G+ Y     R   S +AL  D    LS  ++LP+G RY++++DG
Sbjct:   131 KAKKVRFYRNGDRYFKGIVYAVSSDR-FRSFDALLADLTRSLSDNINLPQGVRYIYTIDG 189

Query:   129 VR-ILTLDELEDNASYVVSSYKTFK 152
              R I ++DELE+  SYV SS   FK
Sbjct:   190 SRKIGSMDELEEGESYVCSSDNFFK 214

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|E1BBU3 DCX "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 4.4e-11, P = 4.4e-11
 Identities = 38/85 (44%), Positives = 54/85 (63%)

Query:    73 RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEAL-QD---KLSVRMDLPRGARYVFSMDG 128
             +A+KV F++NGD YF G+ Y     R   S +AL  D    LS  ++LP+G RY++++DG
Sbjct:    51 KAKKVRFYRNGDRYFKGIVYAVSSDR-FRSFDALLADLTRSLSDNINLPQGVRYIYTIDG 109

Query:   129 VR-ILTLDELEDNASYVVSSYKTFK 152
              R I ++DELE+  SYV SS   FK
Sbjct:   110 SRKIGSMDELEEGESYVCSSDNFFK 134

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0048675 "axon extension" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0021952 "central nervous system projection neuron axonogenesis" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|F1NRR4 DCX "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 38/85 (44%), Positives = 54/85 (63%)

Query:    73 RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEAL-QD---KLSVRMDLPRGARYVFSMDG 128
             +A+KV F++NGD YF G+ Y     R   S +AL  D    LS  ++LP+G RY++++DG
Sbjct:    51 KAKKVRFYRNGDRYFKGIVYAVSSDR-FRSFDALLADLTRSLSDNINLPQGVRYIYTIDG 109

Query:   129 VR-ILTLDELEDNASYVVSSYKTFK 152
              R I ++DELE+  SYV SS   FK
Sbjct:   110 SRKIGSMDELEEGESYVCSSDNFFK 134

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|J9NT27 DCX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 159 (61.0 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 38/85 (44%), Positives = 54/85 (63%)

Query:    73 RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEAL-QD---KLSVRMDLPRGARYVFSMDG 128
             +A+KV F++NGD YF G+ Y     R   S +AL  D    LS  ++LP+G RY++++DG
Sbjct:    51 KAKKVRFYRNGDRYFKGIVYAVSSDR-FRSFDALLADLTRSLSDNINLPQGVRYIYTIDG 109

Query:   129 VR-ILTLDELEDNASYVVSSYKTFK 152
              R I ++DELE+  SYV SS   FK
Sbjct:   110 SRKIGSMDELEEGESYVCSSDNFFK 134

GO:0035556 "intracellular signal transduction" evidence=IEA

UNIPROTKB|K7GL04 LOC100523160 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 159 (61.0 bits), Expect = 4.7e-11, P = 4.7e-11
 Identities = 38/85 (44%), Positives = 54/85 (63%)

Query:    73 RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEAL-QD---KLSVRMDLPRGARYVFSMDG 128
             +A+KV F++NGD YF G+ Y     R   S +AL  D    LS  ++LP+G RY++++DG
Sbjct:    51 KAKKVRFYRNGDRYFKGIVYAVSSDR-FRSFDALLADLTRSLSDNINLPQGVRYIYTIDG 109

Query:   129 VR-ILTLDELEDNASYVVSSYKTFK 152
              R I ++DELE+  SYV SS   FK
Sbjct:   110 SRKIGSMDELEEGESYVCSSDNFFK 134

GO:0035556 "intracellular signal transduction" evidence=IEA

MGI|MGI:1277171 Dcx "doublecortin" [Mus musculus (taxid:10090)]

 Score = 159 (61.0 bits), Expect = 4.7e-11, P = 4.7e-11
 Identities = 38/85 (44%), Positives = 54/85 (63%)

Query:    73 RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEAL-QD---KLSVRMDLPRGARYVFSMDG 128
             +A+KV F++NGD YF G+ Y     R   S +AL  D    LS  ++LP+G RY++++DG
Sbjct:    51 KAKKVRFYRNGDRYFKGIVYAVSSDR-FRSFDALLADLTRSLSDNINLPQGVRYIYTIDG 109

Query:   129 VR-ILTLDELEDNASYVVSSYKTFK 152
              R I ++DELE+  SYV SS   FK
Sbjct:   110 SRKIGSMDELEEGESYVCSSDNFFK 134

GO:0001764 "neuron migration" evidence=ISO;IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0007420 "brain development" evidence=IGI

GO:0008017 "microtubule binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0021952 "central nervous system projection neuron axonogenesis" evidence=IGI

GO:0030154 "cell differentiation" evidence=IEA

GO:0030425 "dendrite" evidence=ISO

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0043005 "neuron projection" evidence=ISO

GO:0048675 "axon extension" evidence=IGI

GO:0048813 "dendrite morphogenesis" evidence=IGI

UNIPROTKB|K7GQ57 LOC100523160 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 159 (61.0 bits), Expect = 6.4e-11, P = 6.4e-11
 Identities = 38/85 (44%), Positives = 54/85 (63%)

Query:    73 RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEAL-QD---KLSVRMDLPRGARYVFSMDG 128
             +A+KV F++NGD YF G+ Y     R   S +AL  D    LS  ++LP+G RY++++DG
Sbjct:   111 KAKKVRFYRNGDRYFKGIVYAVSSDR-FRSFDALLADLTRSLSDNINLPQGVRYIYTIDG 169

Query:   129 VR-ILTLDELEDNASYVVSSYKTFK 152
              R I ++DELE+  SYV SS   FK
Sbjct:   170 SRKIGSMDELEEGESYVCSSDNFFK 194

GO:0035556 "intracellular signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VUI3	EMAL_DROME	No assigned EC number	0.6062	0.7425	0.1152	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	167
smart00537	89	smart00537, DCX, Domain in the Doublecortin (DCX)	2e-23
cd01617	80	cd01617, DCX, Ubiquitin-like domain of DCX	9e-18
pfam03607	60	pfam03607, DCX, Doublecortin	3e-16

>gnl|CDD|214711 smart00537, DCX, Domain in the Doublecortin (DCX) gene product

 Score = 88.1 bits (219), Expect = 2e-23
 Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 3/85 (3%)

Query: 70  SYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLS--VRMDLPRGARYVFSMD 127
           S  + +++ F++NGD +F GV       R   S EAL   L+  V++DLP G R ++++D
Sbjct: 1   SLVKPKRIRFYRNGDRFFKGVRLVVNRKR-FKSFEALLQDLTEVVKLDLPHGVRKLYTLD 59

Query: 128 GVRILTLDELEDNASYVVSSYKTFK 152
           G ++ +LDELED  SYV S  + FK
Sbjct: 60  GKKVTSLDELEDGGSYVASGTEAFK 84

Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects. Length = 89

>gnl|CDD|176357 cd01617, DCX, Ubiquitin-like domain of DCX

 Score = 73.0 bits (180), Expect = 9e-18
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 3/80 (3%)

Query: 75  RKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGA-RYVFSMDG-VRIL 132
           ++V  ++NGDP+F GV       R   S +AL D L+ ++ L  GA R ++++DG  R+ 
Sbjct: 1   KRVVVYRNGDPFFKGVRLLVNRRR-FKSFDALLDDLTEKVQLDPGAVRKLYTLDGGHRVS 59

Query: 133 TLDELEDNASYVVSSYKTFK 152
            LDELED   YV S  + FK
Sbjct: 60  LLDELEDGGVYVASGREPFK 79

DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females. Length = 80

>gnl|CDD|217637 pfam03607, DCX, Doublecortin

 Score = 68.7 bits (169), Expect = 3e-16
 Identities = 24/55 (43%), Positives = 36/55 (65%)

Query: 98  RDIPSLEALQDKLSVRMDLPRGARYVFSMDGVRILTLDELEDNASYVVSSYKTFK 152
           R   S +AL D L+ ++ LP G R ++++DG R+ +LDELED  SYV +  + FK
Sbjct: 6   RRFKSFDALLDDLTEKVKLPSGVRKLYTLDGHRVTSLDELEDGGSYVAAGRERFK 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
smart00537	89	DCX Domain in the Doublecortin (DCX) gene product.	100.0
cd01617	80	DCX Ubiquitin-like domain of DCX. DCX The ubiquiti	99.97
KOG3757|consensus	301		99.96
PF03607	60	DCX: Doublecortin; InterPro: IPR003533 X-linked li	99.91
KOG3757|consensus	301		98.62
PF11834	69	DUF3354: Domain of unknown function (DUF3354); Int	98.02

>smart00537 DCX Domain in the Doublecortin (DCX) gene product

Probab=100.00  E-value=1.2e-33  Score=206.42  Aligned_cols=85  Identities=38%  Similarity=0.730  Sum_probs=81.2

Q ss_pred             CCceEEEEEEcCCCCCCcEEEEECCCCCCCCHHHHHHHHHh--cCCCCCcceEEEccCCceecCccccccCCeEEEecCC
Q psy12053         72 WRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSV--RMDLPRGARYVFSMDGVRILTLDELEDNASYVVSSYK  149 (167)
Q Consensus        72 ~kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~LLd~LTe--kV~Lp~GVR~LYT~dG~~V~sLddLedG~~YVasG~E  149 (167)
                      .+||+|+||||||++|+|++++|++ |.+++||+||++||+  .+.+|+|||+|||++|++|.+|+||+||+.|||||.|
T Consensus         3 ~k~k~i~~~rNGD~~~~g~~~~v~~-~~~~s~d~lL~~lt~~v~l~~~~~Vr~lyt~~G~~v~~l~~l~~g~~yVa~g~e   81 (89)
T smart00537        3 VKPKRIRFYRNGDRFFKGVRLVVNR-KRFKSFEALLQDLTEVVKLDLPHGVRKLYTLDGKKVTSLDELEDGGSYVASGTE   81 (89)
T ss_pred             ccceEEEEEeCCCCCCCCEEEEECh-hhcCCHHHHHHHHhhhcccCCCCCeeEEEcCCCCEECCHHHhCcCCEEEEEcCC
Confidence            5999999999999999999999998 779999999999999  6677777999999999999999999999999999999


Q ss_pred             CccccCcc
Q psy12053        150 TFKVRFYP  157 (167)
Q Consensus       150 ~FKkl~Y~  157 (167)
                      +||+++|+
T Consensus        82 ~fk~~~Y~   89 (89)
T smart00537       82 AFKKVDYG   89 (89)
T ss_pred             cceeCCCC
Confidence            99999995

Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.

>cd01617 DCX Ubiquitin-like domain of DCX

Probab=99.97  E-value=3.2e-31  Score=189.94  Aligned_cols=78  Identities=40%  Similarity=0.747  Sum_probs=74.2

Q ss_pred             eEEEEEEcCCCCCCcEEEEECCCCCCCCHHHHHHHHHhcCCC-CCcceEEEccCC-ceecCccccccCCeEEEecCCCcc
Q psy12053         75 RKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDL-PRGARYVFSMDG-VRILTLDELEDNASYVVSSYKTFK  152 (167)
Q Consensus        75 KrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~LLd~LTekV~L-p~GVR~LYT~dG-~~V~sLddLedG~~YVasG~E~FK  152 (167)
                      |+|+||||||++|+|++++|++ |.++|||+||++||++|+| +.|||+|||+|| +.|.+++||++|+.|||||.|+||
T Consensus         1 k~I~~~rNGD~~~~g~~~~i~~-~~~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g~~~v~~~~~l~~g~~yVa~g~e~fk   79 (80)
T cd01617           1 KRVVVYRNGDPFFKGVRLLVNR-RRFKSFDALLDDLTEKVQLDPGAVRKLYTLDGGHRVSLLDELEDGGVYVASGREPFK   79 (80)
T ss_pred             CEEEEEECCCCCCCCEEEEECh-hhhCCHHHHHHHHHHHhCCCCCcEEEEEcCCCCeEeccHHHhcCCCEEEEECCCCCC
Confidence            6899999999999999999998 7799999999999999999 666999999999 778899999999999999999998


Q ss_pred             c
Q psy12053        153 V  153 (167)
Q Consensus       153 k  153 (167)
                      +
T Consensus        80 ~   80 (80)
T cd01617          80 K   80 (80)
T ss_pred             C
Confidence            5

DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.

>KOG3757|consensus

Probab=99.96  E-value=1.9e-29  Score=219.76  Aligned_cols=87  Identities=45%  Similarity=0.821  Sum_probs=83.7

Q ss_pred             CceEEEEEEcCCCCCCcEEEEECCCCCCCCHHHHHHHHHhcCCCCCcceEEEccCC-ceecCccccccCCeEEEecCCCc
Q psy12053         73 RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDG-VRILTLDELEDNASYVVSSYKTF  151 (167)
Q Consensus        73 kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~LLd~LTekV~Lp~GVR~LYT~dG-~~V~sLddLedG~~YVasG~E~F  151 (167)
                      ++|+|.||||||+||.|++++||+ |.+++||.||++||+.|+||+|||+|||+|| ++|.+|||||||++|||++.|.|
T Consensus        28 ~ak~i~fYrnGD~~~~Gv~~vv~~-~rv~sfe~Ll~~lt~~v~lp~Gvr~iyT~~G~~~I~sldeledG~sYV~ss~~~F  106 (301)
T KOG3757|consen   28 KAKRISFYRNGDPYFKGVKFVVNP-RRVKSFEPLLEDLTRRVQLPFGVRHIYTPDGGHRITSLDELEDGGSYVASSNENF  106 (301)
T ss_pred             CceEEEEeccCCccCCceEEEecc-cccCchHHHHHhhccccCCCccceeeecCCCCceeccHHHhhcccceeccCcccc
Confidence            899999999999999999999999 6699999999999999999999999999999 78899999999999999999999


Q ss_pred             cccCcccce
Q psy12053        152 KVRFYPFVF  160 (167)
Q Consensus       152 Kkl~Y~~i~  160 (167)
                      ++++|+.+.
T Consensus       107 kp~~Y~~~~  115 (301)
T KOG3757|consen  107 KPVDYSKIR  115 (301)
T ss_pred             ccccccccc
Confidence            999998753

>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males

Probab=99.91  E-value=1.6e-24  Score=148.11  Aligned_cols=60  Identities=42%  Similarity=0.746  Sum_probs=54.6

Q ss_pred             EEECCCCCCCCHHHHHHHHHhcCCCCCcceEEEccCCceecCccccccCCeEEEecCCCcc
Q psy12053         92 YRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDGVRILTLDELEDNASYVVSSYKTFK  152 (167)
Q Consensus        92 vvVs~~R~~ksfd~LLd~LTekV~Lp~GVR~LYT~dG~~V~sLddLedG~~YVasG~E~FK  152 (167)
                      ++||+ |.++|||+||++||++|+||+|||+|||++|++|.+++||+||+.|||||.|+||
T Consensus         1 ~~i~~-r~~~s~e~lL~~it~~v~l~~gVr~lyt~~G~~V~~l~~l~dg~~yVa~g~e~fk   60 (60)
T PF03607_consen    1 VVINP-RRFRSFEQLLDEITEKVQLPSGVRKLYTLDGKRVKSLDELEDGGSYVASGREPFK   60 (60)
T ss_dssp             EEEST-TTHSSHHHHHHHHHHSSSSTTS-SEEEETTSSEESSGGGS-TTEEEEEESSSS--
T ss_pred             CeECh-hhhcCHHHHHHHHHhhcCCCcccceEECCCCCEeCCHHHHCCCCEEEEEcCCcCC
Confidence            68998 8899999999999999999999999999999999999999999999999999997

Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.

>KOG3757|consensus

Probab=98.62  E-value=2.7e-08  Score=87.56  Aligned_cols=88  Identities=19%  Similarity=0.354  Sum_probs=79.4

Q ss_pred             CCCCCCCceEEEEEEcCCCCCCcEEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceecCccccc-cCCeEE
Q psy12053         67 DNLSYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRILTLDELE-DNASYV  144 (167)
Q Consensus        67 ~~l~~~kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~sLddLe-dG~~YV  144 (167)
                      .+.....++.|.+.+||+..-+.+++.++. +.-.+||++|..++..|.|-.| |++|||.+|.++.++++|. +++.||
T Consensus       146 ~~~~~~~p~~v~~i~~~~k~R~~~r~~~n~-~~~~Sfd~vl~~~t~~v~~~sg~~~kl~t~~~~~~~~l~~~~~~~~vf~  224 (301)
T KOG3757|consen  146 ERVPFQRPRIVTVIREGVKPRRAVRLLLNK-KTAMSFDQVLPDVTPAVRLDSGAVKKLYTLDGKRVLSLSDFFGDDDVFV  224 (301)
T ss_pred             ccCCccceeeeeeecccccccchhhcccCc-ccccchhhccccccceeecccCccccccccccccccCHHHccccccEEE
Confidence            344457899999999999999999999998 7789999999999999999999 9999999999999999999 999999


Q ss_pred             EecCCCccccC
Q psy12053        145 VSSYKTFKVRF  155 (167)
Q Consensus       145 asG~E~FKkl~  155 (167)
                      |+|+..|.+..
T Consensus       225 a~gg~~~~~~~  235 (301)
T KOG3757|consen  225 AYGGAEFFRGV  235 (301)
T ss_pred             ecCCCccccch
Confidence            99766666553

>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement

Probab=98.02  E-value=2.8e-05  Score=55.27  Aligned_cols=64  Identities=28%  Similarity=0.361  Sum_probs=54.0

Q ss_pred             ceEEEEEEcCCCCC---CcEEEEECCCCCCCCHHHHHHHHHhcCCCCCcceEEEccCCceecCccccccCCeEE
Q psy12053         74 ARKVTFFKNGDPYF---PGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGARYVFSMDGVRILTLDELEDNASYV  144 (167)
Q Consensus        74 aKrI~vYRNGD~~f---~Gv~vvVs~~R~~ksfd~LLd~LTekV~Lp~GVR~LYT~dG~~V~sLddLedG~~YV  144 (167)
                      ++||++|.|+-...   .|+-+.+.     .||++||...++|+..+  ..+||+.||..|.+++-|.||+..+
T Consensus         1 ~~RVtI~~~~~~~~~~~~GKvi~lP-----~SleeLl~ia~~kfg~~--~~~v~~~dgaeIdDI~~IRDgD~L~   67 (69)
T PF11834_consen    1 PKRVTIFPNHPPEKGRRAGKVIWLP-----DSLEELLKIASEKFGFS--ATKVLNEDGAEIDDIDVIRDGDHLY   67 (69)
T ss_pred             CcEEEEecCCCCcccCcCCEEEEcC-----ccHHHHHHHHHHHhCCC--ceEEEcCCCCEEeEEEEEEcCCEEE
Confidence            57999998876544   47655554     49999999999999996  8999999999999999999998743

Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	167
2xrp_I	95	Human Doublecortin N-Dc Repeat (1mjd) And Mammalian		5e-11
1mjd_A	113	Structure Of N-Terminal Domain Of Human Doublecorti		6e-11
4atu_I	373	Human Doublecortin N-Dc Repeat Plus Linker, And Tub		6e-11
1uf0_A	116	Solution Structure Of The N-Terminal Dcx Domain Of		2e-10
2bqq_A	113	X-Ray Strucure Of The N-Terminal Domain Of Human Do		2e-10
1mg4_A	113	Structure Of N-Terminal Doublecortin Domain From Dc		3e-10
1mfw_A	107	Structure Of N-Terminal Doublecortin Domain From Dc		1e-09

>pdb|2XRP|I Chain I, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 95

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 6/85 (7%)
Query: 73  RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEA----LQDKLSVRMDLPRGARYVFSMDG 128
           +A+KV F++NGD YF G+ Y     R   S +A    L   LS  ++LP+G RY++++DG
Sbjct: 6   KAKKVRFYRNGDRYFKGIVYAVSSDR-FRSFDALLADLTRSLSDNINLPQGVRYIYTIDG 64
Query: 129 VR-ILTLDELEDNASYVVSSYKTFK 152
            R I ++DELE+  SYV SS   FK
Sbjct: 65  SRKIGSMDELEEGESYVCSSDNFFK 89

>pdb|1MJD|A Chain A, Structure Of N-Terminal Domain Of Human Doublecortin Length = 113

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 6/85 (7%)
Query: 73  RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEA----LQDKLSVRMDLPRGARYVFSMDG 128
           +A+KV F++NGD YF G+ Y     R   S +A    L   LS  ++LP+G RY++++DG
Sbjct: 14  KAKKVRFYRNGDRYFKGIVYAVSSDR-FRSFDALLADLTRSLSDNINLPQGVRYIYTIDG 72
Query: 129 VR-ILTLDELEDNASYVVSSYKTFK 152
            R I ++DELE+  SYV SS   FK
Sbjct: 73  SRKIGSMDELEEGESYVCSSDNFFK 97

>pdb|4ATU|I Chain I, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin (2xrp) Docked Into An 8a Cryo-Em Map Of Doublecortin-Stabilised Microtubules Reconstructed In Absence Of Kinesin Length = 373

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 6/85 (7%)
Query: 73  RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEA----LQDKLSVRMDLPRGARYVFSMDG 128
           +A+KV F++NGD YF G+ Y     R   S +A    L   LS  ++LP+G RY++++DG
Sbjct: 64  KAKKVRFYRNGDRYFKGIVYAVSSDR-FRSFDALLADLTRSLSDNINLPQGVRYIYTIDG 122
Query: 129 VR-ILTLDELEDNASYVVSSYKTFK 152
            R I ++DELE+  SYV SS   FK
Sbjct: 123 SRKIGSMDELEEGESYVCSSDNFFK 147

>pdb|1UF0|A Chain A, Solution Structure Of The N-Terminal Dcx Domain Of Human Doublecortin-Like Kinase Length = 116

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 6/85 (7%)
Query: 73  RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEA----LQDKLSVRMDLPRGARYVFSMDG 128
           +A+KV F++NGD YF G+ Y   P R   S EA    L   LS  ++LP+G R ++++DG
Sbjct: 9   KAKKVRFYRNGDRYFKGIVYAISPDR-FRSFEALLADLTRTLSDNVNLPQGVRTIYTIDG 67
Query: 129 V-RILTLDELEDNASYVVSSYKTFK 152
           + +I +LD+L +  SYV  S + FK
Sbjct: 68  LKKISSLDQLVEGESYVCGSIEPFK 92

>pdb|2BQQ|A Chain A, X-Ray Strucure Of The N-Terminal Domain Of Human Doublecortin Length = 113

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 6/84 (7%)
Query: 73  RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEA----LQDKLSVRMDLPRGARYVFSMDG 128
           +A+KV F++NGD YF G+ Y     R   S +A    L   LS  ++LP+G RY++++DG
Sbjct: 14  KAKKVRFYRNGDRYFKGIVYAVSSDR-FRSFDALLADLTRSLSDNINLPQGVRYIYTIDG 72
Query: 129 VR-ILTLDELEDNASYVVSSYKTF 151
            R I ++DELE+  SYV SS   F
Sbjct: 73  SRKIGSMDELEEGESYVCSSDNFF 96

>pdb|1MG4|A Chain A, Structure Of N-Terminal Doublecortin Domain From Dclk: Wild Type Protein Length = 113

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 6/85 (7%)
Query: 73  RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEA----LQDKLSVRMDLPRGARYVFSMDG 128
           +A+KV F++NGD YF G+ Y   P R   S EA    L   LS  ++LP+G R ++++DG
Sbjct: 14  KAKKVRFYRNGDRYFKGIVYAISPDR-FRSFEALLADLTRTLSDNVNLPQGVRTIYTIDG 72
Query: 129 V-RILTLDELEDNASYVVSSYKTFK 152
           + +I +LD+L +  SYV  S + FK
Sbjct: 73  LKKISSLDQLVEGESYVCGSIEPFK 97

>pdb|1MFW|A Chain A, Structure Of N-Terminal Doublecortin Domain From Dclk: Selenomethionine Labeled Protein Length = 107

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 6/85 (7%)
Query: 73  RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEA----LQDKLSVRMDLPRGARYVFSMDG 128
           +A+KV F++NGD YF G+ Y   P R   S EA    L   LS  ++LP+G R ++++DG
Sbjct: 8   KAKKVRFYRNGDRYFKGIVYAISPDR-FRSFEALLADLTRTLSDNVNLPQGVRTIYTIDG 66
Query: 129 V-RILTLDELEDNASYVVSSYKTFK 152
           + +I + D+L +  SYV  S + FK
Sbjct: 67  LKKISSXDQLVEGESYVCGSIEPFK 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	167
1mg4_A	113	Doublecortin, doublecortin-like kinase (N-terminal	5e-23
1uf0_A	116	Serine/threonine-protein kinase dcamkl1; structura	4e-21
2dnf_A	108	Doublecortin domain-containing protein 2; structur	9e-20

>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX domain, microtubule bundling, cortex development, transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB: 1mfw_A 1mjd_A 2bqq_A 2xrp_I* Length = 113

 Score = 86.8 bits (215), Expect = 5e-23
 Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 6/95 (6%)

Query: 63  ESKYDNLSYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQD----KLSVRMDLPR 118
           + ++   S  +A+KV F++NGD YF G+ Y   P R   S EAL       LS  ++LP+
Sbjct: 4   DPEFTLSSEKKAKKVRFYRNGDRYFKGIVYAISPDR-FRSFEALLADLTRTLSDNVNLPQ 62

Query: 119 GARYVFSMDGV-RILTLDELEDNASYVVSSYKTFK 152
           G R ++++DG+ +I +LD+L +  SYV  S + FK
Sbjct: 63  GVRTIYTIDGLKKISSLDQLVEGESYVCGSIEPFK 97

>1uf0_A Serine/threonine-protein kinase dcamkl1; structural genomics, ubiquitin-like fold, microtubule- binding; NMR {Homo sapiens} SCOP: d.15.11.1 Length = 116

 Score = 82.3 bits (203), Expect = 4e-21
 Identities = 36/90 (40%), Positives = 54/90 (60%), Gaps = 6/90 (6%)

Query: 68  NLSYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKL----SVRMDLPRGARYV 123
             S  +A+KV F++NGD YF G+ Y   P R   S EAL   L    S  ++LP+G R +
Sbjct: 4   GSSGKKAKKVRFYRNGDRYFKGIVYAISPDR-FRSFEALLADLTRTLSDNVNLPQGVRTI 62

Query: 124 FSMDGV-RILTLDELEDNASYVVSSYKTFK 152
           +++DG+ +I +LD+L +  SYV  S + FK
Sbjct: 63  YTIDGLKKISSLDQLVEGESYVCGSIEPFK 92

>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Length = 108

 Score = 78.3 bits (193), Expect = 9e-20
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 73  RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRGA-RYVFSMDGVRI 131
               +    NGD   P       P + +   + +   ++ ++ L  GA   +++++G  +
Sbjct: 13  EPCTIFLIANGDLINPASRLLI-PRKTLNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLV 71

Query: 132 LTLDELEDNASYVVSSYKTFK 152
            +  ELE+   YV      FK
Sbjct: 72  ESGAELENGQFYVAVGRDKFK 92

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
1mg4_A	113	Doublecortin, doublecortin-like kinase (N-terminal	100.0
2dnf_A	108	Doublecortin domain-containing protein 2; structur	100.0
4atu_I	373	Neuronal migration protein doublecortin; hydrolase	99.96
4atu_I	373	Neuronal migration protein doublecortin; hydrolase	99.88

>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX domain, microtubule bundling, cortex development, transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB: 1mfw_A 1mjd_A 2bqq_A 2xrp_I*

Probab=100.00  E-value=7e-35  Score=221.59  Aligned_cols=90  Identities=39%  Similarity=0.684  Sum_probs=83.3

Q ss_pred             CCCCceEEEEEEcCCCCCCcEEEEECCCCCCCCHHHHHHHHHh----cCCCCCcceEEEccCC-ceecCccccccCCeEE
Q psy12053         70 SYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSV----RMDLPRGARYVFSMDG-VRILTLDELEDNASYV  144 (167)
Q Consensus        70 ~~~kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~LLd~LTe----kV~Lp~GVR~LYT~dG-~~V~sLddLedG~~YV  144 (167)
                      ++++||+|+||||||+||+|++|+|++ |.++|||+||++||+    +|.||+|||+|||+|| ++|++|+||+||+.||
T Consensus        11 ~~~kak~I~~yrNGD~~~~G~~~~v~~-~~~~tfd~LL~~lT~~Ls~~v~lp~GVR~lyt~~G~~~I~sl~dL~dG~~YV   89 (113)
T 1mg4_A           11 SEKKAKKVRFYRNGDRYFKGIVYAISP-DRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVEGESYV   89 (113)
T ss_dssp             --CCSEEEEEEETTCSSCCCEEEEECT-TTCSSHHHHHHHHHHHHCCSSSSTTCCCEEEETTSSCBCCSGGGCCTTCEEE
T ss_pred             CCCCceEEEEEECCCCCCCCEEEEECc-cccCCHHHHHHHHHHHHhhcCCCCcceeEEEcCCCCeEcCCHHHhhCCCEEE
Confidence            356999999999999999999999998 679999999999976    5699999999999999 8999999999999999


Q ss_pred             EecCCCccccCcccce
Q psy12053        145 VSSYKTFKVRFYPFVF  160 (167)
Q Consensus       145 asG~E~FKkl~Y~~i~  160 (167)
                      |||.|+||+++|..+.
T Consensus        90 c~~~e~fk~i~Y~~~~  105 (113)
T 1mg4_A           90 CGSIEPFKKLEYTKNV  105 (113)
T ss_dssp             EESSSCCCCCCTTTTC
T ss_pred             EeCCCCceecCcCccC
Confidence            9999999999998754

>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=212.00  Aligned_cols=89  Identities=17%  Similarity=0.282  Sum_probs=85.6

Q ss_pred             CCCCceEEEEEEcCCCCCCcEEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceecCccccccCCeEEEecC
Q psy12053         70 SYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRILTLDELEDNASYVVSSY  148 (167)
Q Consensus        70 ~~~kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~sLddLedG~~YVasG~  148 (167)
                      +..+||+|+||||||++++|++++|++ |.+++||+||++||++|+||+| ||+|||++|++|.+|+||+||+.|||||.
T Consensus        10 ~~~~pk~I~v~rNGD~~~~g~~v~i~~-~~~~sfe~lL~~lT~~v~l~~GaVr~Lyt~~G~~V~~l~dl~dg~~YVa~g~   88 (108)
T 2dnf_A           10 PLQEPCTIFLIANGDLINPASRLLIPR-KTLNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVESGAELENGQFYVAVGR   88 (108)
T ss_dssp             CCCCCEEEEECBTTCSSSCCEEEEECH-HHHTCHHHHHHHHHHHCCCTTSSCCEEEETTCCEESSTTSCCSSCBEEEECS
T ss_pred             CCCcceEEEEEeCCCCCCCCEEEEECC-ccccCHHHHHHHHHHhhCCCCCCEEEEEcCCCCEeCCHHHhCCCCEEEEeCC
Confidence            367999999999999999999999998 7899999999999999999999 99999999999999999999999999999


Q ss_pred             CCccccCcccc
Q psy12053        149 KTFKVRFYPFV  159 (167)
Q Consensus       149 E~FKkl~Y~~i  159 (167)
                      |+||+++|..+
T Consensus        89 E~fk~~~Y~~~   99 (108)
T 2dnf_A           89 DKFKKLPYGEL   99 (108)
T ss_dssp             SCCCCCCCHHH
T ss_pred             CcceecccCcc
Confidence            99999999874

>4atu_I Neuronal migration protein doublecortin; hydrolase, microtubule-associated protein; HET: GDP GTP; 8.30A {Homo sapiens} PDB: 1uf0_A

Probab=99.96  E-value=2.3e-30  Score=229.12  Aligned_cols=89  Identities=39%  Similarity=0.695  Sum_probs=80.9

Q ss_pred             CCCCceEEEEEEcCCCCCCcEEEEECCCCCCCCHHHHHHHHHh----cCCCCCcceEEEccCC-ceecCccccccCCeEE
Q psy12053         70 SYWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSV----RMDLPRGARYVFSMDG-VRILTLDELEDNASYV  144 (167)
Q Consensus        70 ~~~kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~LLd~LTe----kV~Lp~GVR~LYT~dG-~~V~sLddLedG~~YV  144 (167)
                      ++.+||+|+||||||+||+|++|+|++ |.|++||+||++||+    +|.||+|||+|||++| ++|.+|||||||++||
T Consensus        61 ~~~kAKrV~fyrNGD~~f~G~~~~V~~-~r~~tfd~lL~~lT~~Ls~~v~LP~GVR~i~tp~G~~~i~~ld~LedG~~YV  139 (373)
T 4atu_I           61 NEKKAKKVRFYRNGDRYFKGIVYAVSS-DRFRSFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESYV  139 (373)
T ss_dssp             ---CCEEEEEEESSCSSCCCEEEEECT-TTCSSHHHHHHHHHHHSCCSSSCTTSCSEEEETTSSSEECSGGGCCTTEEEE
T ss_pred             CCccceEEEEEeCCCCCCCCeEEEECC-cccCCHHHHHHHHHHHhhccCCCCceeEEEEcCCCCeecCcHHHhccCCEEE
Confidence            468999999999999999999999998 669999999999875    5789999999999987 5799999999999999


Q ss_pred             EecCCCccccCcccc
Q psy12053        145 VSSYKTFKVRFYPFV  159 (167)
Q Consensus       145 asG~E~FKkl~Y~~i  159 (167)
                      |||.|+||+++|..+
T Consensus       140 ~s~~e~fKki~Y~~~  154 (373)
T 4atu_I          140 CSSDNFFKKVEYTKN  154 (373)
T ss_dssp             EESSCCCCCCCCCCC
T ss_pred             EeCCCCccccccccc
Confidence            999999999999854

>4atu_I Neuronal migration protein doublecortin; hydrolase, microtubule-associated protein; HET: GDP GTP; 8.30A {Homo sapiens} PDB: 1uf0_A

Probab=99.88  E-value=2.8e-24  Score=190.27  Aligned_cols=92  Identities=16%  Similarity=0.335  Sum_probs=0.0

Q ss_pred             CCCceEEEEEEcCCCCCCcEEEEECCCCCCCCHHHHHHHHHhcCCCCCc-ceEEEccCCceecCccc-cccCCeEEEecC
Q psy12053         71 YWRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMDLPRG-ARYVFSMDGVRILTLDE-LEDNASYVVSSY  148 (167)
Q Consensus        71 ~~kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~LLd~LTekV~Lp~G-VR~LYT~dG~~V~sLdd-LedG~~YVasG~  148 (167)
                      ..++|+|+||||||.++++++|+||+ |.+++||+||++||++|+|++| ||+|||++|++|.+++| |++|+.|||||.
T Consensus       189 ~~kPk~I~V~rNGd~~~~~~rvlLn~-r~~~sfe~vL~~ite~l~l~~GaVrkLyT~~G~~v~~l~d~l~~~~~yVA~G~  267 (373)
T 4atu_I          189 FVRPKLVTIIRSGVKPRKAVRVLLNK-KTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGP  267 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCccEEEEEeCCCCCCCCEEEEECC-ccccCHHHHHHHHHhhcCCCCCceeEEEcCCCCEecCHHHHhcCCCEEEEecC
Confidence            46899999999999999999999998 9999999999999999999999 99999999999999877 779999999999


Q ss_pred             CCccccCcccceeee
Q psy12053        149 KTFKVRFYPFVFTYL  163 (167)
Q Consensus       149 E~FKkl~Y~~i~~y~  163 (167)
                      |+||.++|++....+
T Consensus       268 E~Fk~~~~d~~~~~~  282 (373)
T 4atu_I          268 EKFRYAQDDFSLDEN  282 (373)
T ss_dssp             ---------------
T ss_pred             CcCcccccccccccc
Confidence            999999998766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	167
d1mg4a_	101	d.15.11.1 (A:) Doublecortin-like kinase Dclk {Huma	5e-20

>d1mg4a_ d.15.11.1 (A:) Doublecortin-like kinase Dclk {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Doublecortin (DC)
family: Doublecortin (DC)
domain: Doublecortin-like kinase Dclk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (192), Expect = 5e-20
 Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 6/85 (7%)

Query: 73  RARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQD----KLSVRMDLPRGARYVFSMDG 128
           +A+KV F++NGD YF G+ Y   P R   S EAL       LS  ++LP+G R ++++DG
Sbjct: 2   KAKKVRFYRNGDRYFKGIVYAISPDR-FRSFEALLADLTRTLSDNVNLPQGVRTIYTIDG 60

Query: 129 VRILT-LDELEDNASYVVSSYKTFK 152
           ++ ++ LD+L +  SYV  S + FK
Sbjct: 61  LKKISSLDQLVEGESYVCGSIEPFK 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d1mg4a_	101	Doublecortin-like kinase Dclk {Human (Homo sapiens	100.0

>d1mg4a_ d.15.11.1 (A:) Doublecortin-like kinase Dclk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Doublecortin (DC)
family: Doublecortin (DC)
domain: Doublecortin-like kinase Dclk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-34  Score=211.34  Aligned_cols=88  Identities=39%  Similarity=0.697  Sum_probs=82.0

Q ss_pred             CCceEEEEEEcCCCCCCcEEEEECCCCCCCCHHHHHHHHHhcCC----CCCcceEEEccCC-ceecCccccccCCeEEEe
Q psy12053         72 WRARKVTFFKNGDPYFPGVEYRFKPGRDIPSLEALQDKLSVRMD----LPRGARYVFSMDG-VRILTLDELEDNASYVVS  146 (167)
Q Consensus        72 ~kaKrI~vYRNGD~~f~Gv~vvVs~~R~~ksfd~LLd~LTekV~----Lp~GVR~LYT~dG-~~V~sLddLedG~~YVas  146 (167)
                      .+||+|+||||||++|+|++++||+ |.++|||+||++||+.|.    ||+|||+|||+|| ++|.+++||+||+.||||
T Consensus         1 ~kak~I~~~rNGD~~~~g~~~~i~~-r~~~s~d~lL~~lT~~l~~~~~l~~~Vr~lyt~~G~~~V~~l~dl~~g~~yVa~   79 (101)
T d1mg4a_           1 KKAKKVRFYRNGDRYFKGIVYAISP-DRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVEGESYVCG   79 (101)
T ss_dssp             CCSEEEEEEETTCSSCCCEEEEECT-TTCSSHHHHHHHHHHHHCCSSSSTTCCCEEEETTSSCBCCSGGGCCTTCEEEEE
T ss_pred             CCccEEEEEeCCCCCCCCEEEEECc-cccCCHHHHHHHHHHHhccccCCCCCceEEEeCCCCeEeCCHHHhCCCCEEEEE
Confidence            4899999999999999999999998 789999999999999754    6778999999999 789999999999999999


Q ss_pred             cCCCccccCcccce
Q psy12053        147 SYKTFKVRFYPFVF  160 (167)
Q Consensus       147 G~E~FKkl~Y~~i~  160 (167)
                      |.|+||+++|...+
T Consensus        80 g~E~fk~~~Y~~~~   93 (101)
T d1mg4a_          80 SIEPFKKLEYTKNV   93 (101)
T ss_dssp             SSSCCCCCCTTTTC
T ss_pred             cCCCCccccccccc
Confidence            99999999998754