Psyllid ID: psy12099

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHcccccccccEEEEccHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHcHHHcccc
Secondary Structure Prediction (SSPRO)
EEEcccccccHHHHHHHHccccEEEEEEEHHHHHcEcccccccEHHHHHHHHHHHHHccHHHcccEEEEEEEcHHHHHHHHHHccccHHHHccccccccccHHccccccccHHHHHHHHHHHHHHHHHccccccccEEEEccEEccccHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYnmvlredptqnrLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTryqtpldatpdpgedpivIRAKYFIRDEFLristasgdgkhycyphftcavdteNIRRVFNDCRDIIQRMHLRQYELL
Flexible Loop (DISEMBL)
mfdvggqrderrKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRyqtpldatpdpgedPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Low Complexity Region (SEG)
MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Disordered region (IsUnstruct)
***********RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLD******EDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQ****
Disordered Region (DISOPRED)
MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRIS***GDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Disordered Region (DISEMBL)
*********ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Disordered Region (DISPRO)
*FD**GQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
O16118	379	Guanine nucleotide-bindin	N/A	N/A	1.0	0.459	0.936	6e-96
Q7PD79	383	Guanine nucleotide-bindin	yes	N/A	1.0	0.454	0.931	3e-94
Q6R0H7	1133	Guanine nucleotide-bindin	yes	N/A	1.0	0.153	0.885	5e-94
Q63803	1144	Guanine nucleotide-bindin	yes	N/A	1.0	0.152	0.885	6e-94
Q5JWF2	1037	Guanine nucleotide-bindin	yes	N/A	1.0	0.167	0.885	2e-93
Q292P9	382	Guanine nucleotide-bindin	yes	N/A	1.0	0.455	0.902	2e-92
P30684	376	Guanine nucleotide-bindin	N/A	N/A	1.0	0.462	0.896	1e-91
P20354	385	Guanine nucleotide-bindin	yes	N/A	1.0	0.451	0.887	4e-91
P16052	394	Guanine nucleotide-bindin	N/A	N/A	1.0	0.441	0.885	7e-90
P63091	394	Guanine nucleotide-bindin	yes	N/A	1.0	0.441	0.885	7e-90

>sp|O16118|GNAS_HOMAM Guanine nucleotide-binding protein G(s) subunit alpha OS=Homarus americanus PE=2 SV=1

 Score =  349 bits (895), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 163/174 (93%), Positives = 170/174 (97%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDP+QNRLRESLDLFKSIWNNR
Sbjct: 206 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPSQNRLRESLDLFKSIWNNR 265

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTISVILFLNKQDLLAEK++AGKS+LEDYF +F RYQTPLDAT +PGEDP V+RAKYF
Sbjct: 266 WLRTISVILFLNKQDLLAEKIRAGKSKLEDYFPDFARYQTPLDATVEPGEDPEVVRAKYF 325

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 326 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 379

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(s) protein is involved in hormonal regulation of adenylate cyclase: it activates the cyclase in response to beta-adrenergic stimuli.
Homarus americanus (taxid: 6706)

>sp|Q7PD79|GNAS_ANOGA Guanine nucleotide-binding protein G(s) subunit alpha OS=Anopheles gambiae GN=G-s-alpha-60A PE=2 SV=1

 Score =  343 bits (881), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 162/174 (93%), Positives = 166/174 (95%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR
Sbjct: 210 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 269

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTISVILFLNKQDLLAEK+KAGKS+L DYF EF RYQTP DA  + GEDP VIRAKYF
Sbjct: 270 WLRTISVILFLNKQDLLAEKIKAGKSKLSDYFGEFNRYQTPADAVCEMGEDPEVIRAKYF 329

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDGKHYCYPHFTCAVDTENI+RVFNDCRDIIQRMHLRQYELL
Sbjct: 330 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIKRVFNDCRDIIQRMHLRQYELL 383

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(s) protein is involved in hormonal regulation of adenylate cyclase: it activates the cyclase. Participates in olfactory signal transduction.

Anopheles gambiae (taxid: 7165)

>sp|Q6R0H7|GNAS1_MOUSE Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas OS=Mus musculus GN=Gnas PE=2 SV=1

 Score =  342 bits (878), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 154/174 (88%), Positives = 162/174 (93%)

Query: 1    MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
            MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct: 960  MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 1019

Query: 61   WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
            WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 1020 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 1079

Query: 121  IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
            IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 1080 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 1133

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(s) protein is involved in hormonal regulation of adenylate cyclase: it activates the cyclase in response to beta-adrenergic stimuli. XLas isoforms interact with the same set of receptors as Gnas isoforms.

Mus musculus (taxid: 10090)

>sp|Q63803|GNAS1_RAT Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas OS=Rattus norvegicus GN=Gnas PE=1 SV=3

 Score =  342 bits (878), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 154/174 (88%), Positives = 162/174 (93%)

Query: 1    MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
            MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct: 971  MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 1030

Query: 61   WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
            WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 1031 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 1090

Query: 121  IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
            IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 1091 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 1144

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(s) protein is involved in hormonal regulation of adenylate cyclase: it activates the cyclase in response to beta-adrenergic stimuli. XLas isoforms interact with the same set of receptors as Gnas isoforms.

Rattus norvegicus (taxid: 10116)

>sp|Q5JWF2|GNAS1_HUMAN Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas OS=Homo sapiens GN=GNAS PE=1 SV=2

 Score =  341 bits (874), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 154/174 (88%), Positives = 162/174 (93%)

Query: 1    MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
            MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct: 864  MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 923

Query: 61   WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
            WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 924  WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 983

Query: 121  IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
            IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 984  IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 1037

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(s) protein is involved in hormonal regulation of adenylate cyclase: it activates the cyclase in response to beta-adrenergic stimuli. XLas isoforms interact with the same set of receptors as Gnas isoforms.

Homo sapiens (taxid: 9606)

>sp|Q292P9|GNAS_DROPS Guanine nucleotide-binding protein G(s) subunit alpha OS=Drosophila pseudoobscura pseudoobscura GN=G-salpha60A PE=3 SV=1

 Score =  337 bits (864), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 157/174 (90%), Positives = 165/174 (94%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR
Sbjct: 209 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 268

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTIS+ILFLNKQDLLAEK+KAGKS+L +YF EF +YQTP DA  +  +DP VIRAKYF
Sbjct: 269 WLRTISIILFLNKQDLLAEKIKAGKSKLSEYFSEFNKYQTPSDAIMESNDDPEVIRAKYF 328

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDGKHYCYPHFTCAVDTENI+RVFNDCRDIIQRMHLRQYELL
Sbjct: 329 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIKRVFNDCRDIIQRMHLRQYELL 382

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(s) protein is involved in hormonal regulation of adenylate cyclase: it activates the cyclase.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|P30684|GNAS_LYMST Guanine nucleotide-binding protein G(s) subunit alpha OS=Lymnaea stagnalis PE=2 SV=1

 Score =  335 bits (859), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 156/174 (89%), Positives = 165/174 (94%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFVTACS YNMVLRED TQNRL+ESLDLFKSIWNNR
Sbjct: 203 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSGYNMVLREDATQNRLKESLDLFKSIWNNR 262

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTISVILFLNKQDLLAEKVKAGKS++EDYF E+ RYQ P DA+ +PGED  V+RAKYF
Sbjct: 263 WLRTISVILFLNKQDLLAEKVKAGKSKIEDYFPEYARYQVPPDASSEPGEDTEVVRAKYF 322

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVF+DCRDIIQRMHLRQYELL
Sbjct: 323 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFDDCRDIIQRMHLRQYELL 376

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(s) protein is involved in hormonal regulation of adenylate cyclase: it activates the cyclase in response to beta-adrenergic stimuli.

Lymnaea stagnalis (taxid: 6523)

>sp|P20354|GNAS_DROME Guanine nucleotide-binding protein G(s) subunit alpha OS=Drosophila melanogaster GN=G-salpha60A PE=2 SV=1

 Score =  333 bits (854), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 157/177 (88%), Positives = 166/177 (93%), Gaps = 3/177 (1%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR
Sbjct: 209 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 268

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPL---DATPDPGEDPIVIRA 117
           WLRTIS+ILFLNKQDLLAEK+KAGKS+L +YF EF +YQTP+   DA  +  +DP VIRA
Sbjct: 269 WLRTISIILFLNKQDLLAEKIKAGKSKLSEYFSEFNKYQTPIDTGDAIMESNDDPEVIRA 328

Query: 118 KYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           KYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI+RVFNDCRDIIQRMHLRQYELL
Sbjct: 329 KYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIKRVFNDCRDIIQRMHLRQYELL 385

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(s) protein is involved in hormonal regulation of adenylate cyclase: it activates the cyclase.

Drosophila melanogaster (taxid: 7227)

>sp|P16052|GNAS_CRILO Guanine nucleotide-binding protein G(s) subunit alpha OS=Cricetulus longicaudatus GN=GNAS PE=2 SV=1

 Score =  329 bits (843), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 154/174 (88%), Positives = 162/174 (93%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct: 221 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 281 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 340

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 341 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(s) protein is involved in hormonal regulation of adenylate cyclase: it activates the cyclase in response to beta-adrenergic stimuli.

Cricetulus longicaudatus (taxid: 10030)

>sp|P63091|GNAS_CANFA Guanine nucleotide-binding protein G(s) subunit alpha OS=Canis familiaris GN=GNAS PE=2 SV=1

 Score =  329 bits (843), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 154/174 (88%), Positives = 162/174 (93%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct: 221 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 281 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 340

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 341 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394

Guanine nucleotide-binding proteins (G proteins) are involved as modulators or transducers in various transmembrane signaling systems. The G(s) protein is involved in hormonal regulation of adenylate cyclase: it activates the cyclase in response to beta-adrenergic stimuli.

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
193654865	379	PREDICTED: guanine nucleotide-binding pr	1.0	0.459	0.965	1e-97
3913717	379	RecName: Full=Guanine nucleotide-binding	1.0	0.459	0.936	3e-94
242022816	380	guanine nucleotide-binding protein G, pu	1.0	0.457	0.931	9e-94
427794791	415	Putative g-protein alpha subunit, partia	1.0	0.419	0.936	4e-93
256574614	379	GTP binding protein alpha subunit Gs [Ma	1.0	0.459	0.925	5e-93
51872143	379	G protein s alpha subunit [Litopenaeus v	1.0	0.459	0.925	6e-93
291411140	977	PREDICTED: GNAS complex locus [Oryctolag	1.0	0.178	0.885	7e-93
281348429	913	hypothetical protein PANDA_003573 [Ailur	1.0	0.190	0.885	7e-93
348552530	1083	PREDICTED: guanine nucleotide-binding pr	1.0	0.160	0.885	1e-92
31240039	383	AGAP012095-PA [Anopheles gambiae str. PE	1.0	0.454	0.931	1e-92

>gi|193654865|ref|XP_001944148.1| PREDICTED: guanine nucleotide-binding protein G(s) subunit alpha-like [Acyrthosiphon pisum]

 Score =  360 bits (924), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 168/174 (96%), Positives = 172/174 (98%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLF+SIWNNR
Sbjct: 206 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFRSIWNNR 265

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTISVILFLNKQDLLAEK+KAGKSRLEDYF EFTRYQTP+DATPDPGEDP VIRAKYF
Sbjct: 266 WLRTISVILFLNKQDLLAEKIKAGKSRLEDYFAEFTRYQTPMDATPDPGEDPPVIRAKYF 325

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASG+GKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 326 IRDEFLRISTASGEGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 379

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3913717|sp|O16118.1|GNAS_HOMAM RecName: Full=Guanine nucleotide-binding protein G(s) subunit alpha; AltName: Full=Adenylate cyclase-stimulating G alpha protein gi|2317702|gb|AAB66332.1| G-protein alpha s subunit [Homarus americanus]

 Score =  349 bits (895), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 163/174 (93%), Positives = 170/174 (97%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDP+QNRLRESLDLFKSIWNNR
Sbjct: 206 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPSQNRLRESLDLFKSIWNNR 265

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTISVILFLNKQDLLAEK++AGKS+LEDYF +F RYQTPLDAT +PGEDP V+RAKYF
Sbjct: 266 WLRTISVILFLNKQDLLAEKIRAGKSKLEDYFPDFARYQTPLDATVEPGEDPEVVRAKYF 325

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 326 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 379

Source: Homarus americanus

Species: Homarus americanus

Genus: Homarus

Family: Nephropidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022816|ref|XP_002431834.1| guanine nucleotide-binding protein G, putative [Pediculus humanus corporis] gi|212517166|gb|EEB19096.1| guanine nucleotide-binding protein G, putative [Pediculus humanus corporis]

 Score =  347 bits (890), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 162/174 (93%), Positives = 169/174 (97%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR
Sbjct: 207 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 266

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTIS+ILFLNKQDLLAEK+KAGKS+LEDYF +F+RYQTP DA P+PG+D  VIRAKYF
Sbjct: 267 WLRTISIILFLNKQDLLAEKIKAGKSKLEDYFADFSRYQTPGDAVPEPGDDSQVIRAKYF 326

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 327 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 380

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427794791|gb|JAA62847.1| Putative g-protein alpha subunit, partial [Rhipicephalus pulchellus]

 Score =  345 bits (885), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 163/174 (93%), Positives = 166/174 (95%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDP QNRLRESLDLFKSIWNNR
Sbjct: 242 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPNQNRLRESLDLFKSIWNNR 301

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTISVILFLNKQDLLAEK+KAGKSRLE+YFQEF  YQTP DA  + GEDP VIRAKYF
Sbjct: 302 WLRTISVILFLNKQDLLAEKIKAGKSRLEEYFQEFAHYQTPSDAVIETGEDPEVIRAKYF 361

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 362 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 415

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|256574614|dbj|BAH98112.1| GTP binding protein alpha subunit Gs [Marsupenaeus japonicus]

 Score =  345 bits (884), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 161/174 (92%), Positives = 169/174 (97%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDP+QNRLRESLDLFKSIWNNR
Sbjct: 206 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPSQNRLRESLDLFKSIWNNR 265

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTIS+ILFLNKQDLLAEK++AG+SRLED F +F RYQTPLDAT +PGEDP V+RAKYF
Sbjct: 266 WLRTISIILFLNKQDLLAEKIRAGRSRLEDSFPDFARYQTPLDATVEPGEDPEVVRAKYF 325

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 326 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 379

Source: Marsupenaeus japonicus

Species: Marsupenaeus japonicus

Genus: Marsupenaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|51872143|gb|AAU12181.1| G protein s alpha subunit [Litopenaeus vannamei]

 Score =  344 bits (883), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 161/174 (92%), Positives = 169/174 (97%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDP+QNRLRESLDLFKSIWNNR
Sbjct: 206 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPSQNRLRESLDLFKSIWNNR 265

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTIS+ILFLNKQDLLAEK++AG+SRLED F +F RYQTPLDAT +PGEDP V+RAKYF
Sbjct: 266 WLRTISIILFLNKQDLLAEKIRAGRSRLEDSFPDFARYQTPLDATVEPGEDPEVVRAKYF 325

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 326 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 379

Source: Litopenaeus vannamei

Species: Litopenaeus vannamei

Genus: Litopenaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291411140|ref|XP_002721850.1| PREDICTED: GNAS complex locus [Oryctolagus cuniculus]

 Score =  344 bits (883), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 154/174 (88%), Positives = 162/174 (93%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct: 804 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 863

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 864 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 923

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 924 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 977

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|281348429|gb|EFB24013.1| hypothetical protein PANDA_003573 [Ailuropoda melanoleuca]

 Score =  344 bits (883), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 154/174 (88%), Positives = 162/174 (93%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct: 740 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 799

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 800 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 859

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 860 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 913

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348552530|ref|XP_003462080.1| PREDICTED: guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas [Cavia porcellus]

 Score =  343 bits (881), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 154/174 (88%), Positives = 162/174 (93%)

Query: 1    MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
            MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct: 910  MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 969

Query: 61   WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
            WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 970  WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 1029

Query: 121  IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
            IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 1030 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 1083

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|31240039|ref|XP_320433.1| AGAP012095-PA [Anopheles gambiae str. PEST] gi|74838677|sp|Q7PD79.1|GNAS_ANOGA RecName: Full=Guanine nucleotide-binding protein G(s) subunit alpha; AltName: Full=Adenylate cyclase-stimulating G alpha protein gi|21287974|gb|EAA00295.1| AGAP012095-PA [Anopheles gambiae str. PEST] gi|76881281|gb|ABA56309.1| G(alpha)s [Anopheles gambiae]

 Score =  343 bits (881), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 162/174 (93%), Positives = 166/174 (95%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR
Sbjct: 210 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 269

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTISVILFLNKQDLLAEK+KAGKS+L DYF EF RYQTP DA  + GEDP VIRAKYF
Sbjct: 270 WLRTISVILFLNKQDLLAEKIKAGKSKLSDYFGEFNRYQTPADAVCEMGEDPEVIRAKYF 329

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDGKHYCYPHFTCAVDTENI+RVFNDCRDIIQRMHLRQYELL
Sbjct: 330 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIKRVFNDCRDIIQRMHLRQYELL 383

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
UNIPROTKB|Q7PD79	383	G-s-alpha-60A "Guanine nucleot	1.0	0.454	0.931	1.3e-86
UNIPROTKB|Q292P9	382	G-salpha60A "Guanine nucleotid	1.0	0.455	0.902	4.9e-85
FB|FBgn0001123	385	Galphas "G protein alpha s sub	1.0	0.451	0.887	4.4e-84
UNIPROTKB|F1N0T0	347	GNAS "GAIPIRRH peptide" [Bos t	1.0	0.501	0.885	2.8e-82
UNIPROTKB|G1K1V2	332	GNAS "GAIPIRRH peptide" [Bos t	1.0	0.524	0.885	2.8e-82
UNIPROTKB|P04896	394	GNAS "Guanine nucleotide-bindi	1.0	0.441	0.885	2.8e-82
UNIPROTKB|P63091	394	GNAS "Guanine nucleotide-bindi	1.0	0.441	0.885	2.8e-82
UNIPROTKB|A6NI00	395	GNAS "Guanine nucleotide-bindi	1.0	0.440	0.885	2.8e-82
UNIPROTKB|P63092	394	GNAS "Guanine nucleotide-bindi	1.0	0.441	0.885	2.8e-82
UNIPROTKB|Q5JWF2	1037	GNAS "Guanine nucleotide-bindi	1.0	0.167	0.885	2.8e-82

UNIPROTKB|Q7PD79 G-s-alpha-60A "Guanine nucleotide-binding protein G(s) subunit alpha" [Anopheles gambiae (taxid:7165)]

 Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
 Identities = 162/174 (93%), Positives = 166/174 (95%)

Query:     1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
             MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR
Sbjct:   210 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 269

Query:    61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
             WLRTISVILFLNKQDLLAEK+KAGKS+L DYF EF RYQTP DA  + GEDP VIRAKYF
Sbjct:   270 WLRTISVILFLNKQDLLAEKIKAGKSKLSDYFGEFNRYQTPADAVCEMGEDPEVIRAKYF 329

Query:   121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
             IRDEFLRISTASGDGKHYCYPHFTCAVDTENI+RVFNDCRDIIQRMHLRQYELL
Sbjct:   330 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIKRVFNDCRDIIQRMHLRQYELL 383

GO:0001664 "G-protein coupled receptor binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0004871 "signal transducer activity" evidence=ISS

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007191 "adenylate cyclase-activating dopamine receptor signaling pathway" evidence=ISS

GO:0007606 "sensory perception of chemical stimulus" evidence=ISS

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=ISS

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=ISS

UNIPROTKB|Q292P9 G-salpha60A "Guanine nucleotide-binding protein G(s) subunit alpha" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 157/174 (90%), Positives = 165/174 (94%)

Query:     1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
             MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR
Sbjct:   209 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 268

Query:    61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
             WLRTIS+ILFLNKQDLLAEK+KAGKS+L +YF EF +YQTP DA  +  +DP VIRAKYF
Sbjct:   269 WLRTISIILFLNKQDLLAEKIKAGKSKLSEYFSEFNKYQTPSDAIMESNDDPEVIRAKYF 328

Query:   121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
             IRDEFLRISTASGDGKHYCYPHFTCAVDTENI+RVFNDCRDIIQRMHLRQYELL
Sbjct:   329 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIKRVFNDCRDIIQRMHLRQYELL 382

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

GO:0007268 "synaptic transmission" evidence=ISS

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=ISS

GO:0007528 "neuromuscular junction development" evidence=ISS

FB|FBgn0001123 Galphas "G protein alpha s subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
 Identities = 157/177 (88%), Positives = 166/177 (93%)

Query:     1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
             MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR
Sbjct:   209 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 268

Query:    61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLD---ATPDPGEDPIVIRA 117
             WLRTIS+ILFLNKQDLLAEK+KAGKS+L +YF EF +YQTP+D   A  +  +DP VIRA
Sbjct:   269 WLRTISIILFLNKQDLLAEKIKAGKSKLSEYFSEFNKYQTPIDTGDAIMESNDDPEVIRA 328

Query:   118 KYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
             KYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI+RVFNDCRDIIQRMHLRQYELL
Sbjct:   329 KYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIKRVFNDCRDIIQRMHLRQYELL 385

GO:0005604 "basement membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS;IBA;NAS

GO:0003924 "GTPase activity" evidence=ISS;IBA;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS;NAS

GO:0007190 "activation of adenylate cyclase activity" evidence=NAS

GO:0002165 "instar larval or pupal development" evidence=NAS

GO:0048148 "behavioral response to cocaine" evidence=NAS

GO:0007611 "learning or memory" evidence=NAS

GO:0007632 "visual behavior" evidence=NAS

GO:0007268 "synaptic transmission" evidence=IMP

GO:0005525 "GTP binding" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0050916 "sensory perception of sweet taste" evidence=IMP

GO:0010353 "response to trehalose stimulus" evidence=IMP

GO:0035220 "wing disc development" evidence=IGI;IMP

GO:0022416 "chaeta development" evidence=IGI;IMP

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IBA

GO:0007191 "adenylate cyclase-activating dopamine receptor signaling pathway" evidence=IBA

GO:0004871 "signal transducer activity" evidence=IBA

GO:0001664 "G-protein coupled receptor binding" evidence=IBA

UNIPROTKB|F1N0T0 GNAS "GAIPIRRH peptide" [Bos taurus (taxid:9913)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 154/174 (88%), Positives = 162/174 (93%)

Query:     1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
             MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct:   174 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 233

Query:    61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
             WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct:   234 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 293

Query:   121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
             IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct:   294 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 347

GO:0071514 "genetic imprinting" evidence=IEA

GO:0051216 "cartilage development" evidence=IEA

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IEA

GO:0045672 "positive regulation of osteoclast differentiation" evidence=IEA

GO:0045669 "positive regulation of osteoblast differentiation" evidence=IEA

GO:0043588 "skin development" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0040032 "post-embryonic body morphogenesis" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007610 "behavior" evidence=IEA

GO:0007191 "adenylate cyclase-activating dopamine receptor signaling pathway" evidence=IEA

GO:0006306 "DNA methylation" evidence=IEA

GO:0006112 "energy reserve metabolic process" evidence=IEA

GO:0001958 "endochondral ossification" evidence=IEA

GO:0001894 "tissue homeostasis" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|G1K1V2 GNAS "GAIPIRRH peptide" [Bos taurus (taxid:9913)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 154/174 (88%), Positives = 162/174 (93%)

Query:     1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
             MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct:   159 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 218

Query:    61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
             WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct:   219 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 278

Query:   121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
             IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct:   279 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 332

GO:0005525 "GTP binding" evidence=IEA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|P04896 GNAS "Guanine nucleotide-binding protein G(s) subunit alpha isoforms short" [Bos taurus (taxid:9913)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 154/174 (88%), Positives = 162/174 (93%)

Query:     1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
             MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct:   221 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280

Query:    61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
             WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct:   281 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 340

Query:   121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
             IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct:   341 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394

GO:0035255 "ionotropic glutamate receptor binding" evidence=ISS

GO:0031852 "mu-type opioid receptor binding" evidence=ISS

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=ISS

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=ISS

GO:0007606 "sensory perception of chemical stimulus" evidence=ISS

GO:0007191 "adenylate cyclase-activating dopamine receptor signaling pathway" evidence=ISS

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0004871 "signal transducer activity" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0071514 "genetic imprinting" evidence=IEA

GO:0051216 "cartilage development" evidence=IEA

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IEA

GO:0045672 "positive regulation of osteoclast differentiation" evidence=IEA

GO:0045669 "positive regulation of osteoblast differentiation" evidence=IEA

GO:0043588 "skin development" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0040032 "post-embryonic body morphogenesis" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0007610 "behavior" evidence=IEA

GO:0006306 "DNA methylation" evidence=IEA

GO:0006112 "energy reserve metabolic process" evidence=IEA

GO:0001958 "endochondral ossification" evidence=IEA

GO:0001894 "tissue homeostasis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|P63091 GNAS "Guanine nucleotide-binding protein G(s) subunit alpha" [Canis lupus familiaris (taxid:9615)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 154/174 (88%), Positives = 162/174 (93%)

Query:     1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
             MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct:   221 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280

Query:    61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
             WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct:   281 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 340

Query:   121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
             IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct:   341 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394

GO:0005886 "plasma membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|A6NI00 GNAS "Guanine nucleotide-binding protein G(s) subunit alpha isoforms short" [Homo sapiens (taxid:9606)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 154/174 (88%), Positives = 162/174 (93%)

Query:     1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
             MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct:   222 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 281

Query:    61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
             WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct:   282 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 341

Query:   121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
             IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct:   342 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 395

GO:0003924 "GTPase activity" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|P63092 GNAS "Guanine nucleotide-binding protein G(s) subunit alpha isoforms short" [Homo sapiens (taxid:9606)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 154/174 (88%), Positives = 162/174 (93%)

Query:     1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
             MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct:   221 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280

Query:    61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
             WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct:   281 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 340

Query:   121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
             IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct:   341 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=TAS

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS;TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007190 "activation of adenylate cyclase activity" evidence=TAS

GO:0007608 "sensory perception of smell" evidence=TAS

GO:0031224 "intrinsic to membrane" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=IDA

GO:0046907 "intracellular transport" evidence=NAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0050796 "regulation of insulin secretion" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

GO:0071377 "cellular response to glucagon stimulus" evidence=TAS

GO:0004016 "adenylate cyclase activity" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0006833 "water transport" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0007191 "adenylate cyclase-activating dopamine receptor signaling pathway" evidence=ISS

GO:0071380 "cellular response to prostaglandin E stimulus" evidence=ISS

GO:0071870 "cellular response to catecholamine stimulus" evidence=ISS

GO:0006171 "cAMP biosynthetic process" evidence=TAS

UNIPROTKB|Q5JWF2 GNAS "Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas" [Homo sapiens (taxid:9606)]

 Score = 825 (295.5 bits), Expect = 2.8e-82, P = 2.8e-82
 Identities = 154/174 (88%), Positives = 162/174 (93%)

Query:     1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
             MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct:   864 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 923

Query:    61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
             WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct:   924 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 983

Query:   121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
             IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct:   984 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 1037

GO:0005525 "GTP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0001894 "tissue homeostasis" evidence=IEA

GO:0001958 "endochondral ossification" evidence=IEA

GO:0006112 "energy reserve metabolic process" evidence=IEA

GO:0006306 "DNA methylation" evidence=IEA

GO:0007610 "behavior" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0040032 "post-embryonic body morphogenesis" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043588 "skin development" evidence=IEA

GO:0045669 "positive regulation of osteoblast differentiation" evidence=IEA

GO:0045672 "positive regulation of osteoclast differentiation" evidence=IEA

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IEA

GO:0051216 "cartilage development" evidence=IEA

GO:0071514 "genetic imprinting" evidence=IEA

GO:0003924 "GTPase activity" evidence=IBA

GO:0004871 "signal transducer activity" evidence=IBA

GO:0005834 "heterotrimeric G-protein complex" evidence=IBA

GO:0007191 "adenylate cyclase-activating dopamine receptor signaling pathway" evidence=IBA

GO:0007606 "sensory perception of chemical stimulus" evidence=IBA

GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IBA

GO:0031683 "G-protein beta/gamma-subunit complex binding" evidence=IBA

GO:0031852 "mu-type opioid receptor binding" evidence=IBA

GO:0035255 "ionotropic glutamate receptor binding" evidence=IBA

GO:0005829 "cytosol" evidence=ISS

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6R0H7	GNAS1_MOUSE	No assigned EC number	0.8850	1.0	0.1535	yes	N/A
P20354	GNAS_DROME	No assigned EC number	0.8870	1.0	0.4519	yes	N/A
O16118	GNAS_HOMAM	No assigned EC number	0.9367	1.0	0.4591	N/A	N/A
Q5JWF2	GNAS1_HUMAN	No assigned EC number	0.8850	1.0	0.1677	yes	N/A
Q7PD79	GNAS_ANOGA	No assigned EC number	0.9310	1.0	0.4543	yes	N/A
P63091	GNAS_CANFA	No assigned EC number	0.8850	1.0	0.4416	yes	N/A
Q63803	GNAS1_RAT	No assigned EC number	0.8850	1.0	0.1520	yes	N/A
P04896	GNAS2_BOVIN	No assigned EC number	0.8850	1.0	0.4416	yes	N/A
Q8R4A8	GNAS_CRIGR	No assigned EC number	0.8850	1.0	0.4416	yes	N/A
Q292P9	GNAS_DROPS	No assigned EC number	0.9022	1.0	0.4554	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	174
cd00066	315	cd00066, G-alpha, Alpha subunit of G proteins (gua	1e-86
smart00275	342	smart00275, G_alpha, G protein alpha subunit	3e-73
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	2e-69
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	8e-08
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	2e-07
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	3e-07
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	2e-06
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	6e-06
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	9e-06
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-04
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	2e-04
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	8e-04
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	0.002
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	0.002
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	0.002
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	0.003

>gnl|CDD|206639 cd00066, G-alpha, Alpha subunit of G proteins (guanine nucleotide binding)

 Score =  256 bits (657), Expect = 1e-86
 Identities = 85/168 (50%), Positives = 105/168 (62%), Gaps = 17/168 (10%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF DVTAIIFV A S Y+ VL ED + NR++ESL LF SI N+R
Sbjct: 165 MFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLVEDESVNRMQESLKLFDSICNSR 224

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L DYF ++T            G       A  +
Sbjct: 225 WFANTSIILFLNKKDLFEEKIK--KSPLTDYFPDYT------------GPPNDYEEAAKY 270

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL 168
           I+ +FL ++          YPHFTCA DTENIR VF+  +DII + +L
Sbjct: 271 IKKKFLDLNRNP---NKEIYPHFTCATDTENIRFVFDAVKDIILQNNL 315

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. Length = 315

>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit

 Score =  223 bits (570), Expect = 3e-73
 Identities = 80/171 (46%), Positives = 104/171 (60%), Gaps = 17/171 (9%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF++VTAIIF  A S Y+ VL ED + NR++ESL+LF+SI N+R
Sbjct: 188 MFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK DL  EK+K  K  L DYF ++                     A  F
Sbjct: 248 WFANTSIILFLNKIDLFEEKIK--KVPLVDYFPDYKGPND-------------YEAAAKF 292

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQY 171
           I+ +FLR++      +   Y HFTCA DT NIR VF+  +DII + +L+  
Sbjct: 293 IKQKFLRLNR--NSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRNLKDA 341

Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score =  212 bits (543), Expect = 2e-69
 Identities = 80/174 (45%), Positives = 107/174 (61%), Gaps = 16/174 (9%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           +FDVGGQR ER+KWI CF DVTAIIFV + S Y+ VL ED + NRL ESL+LF+ I N+ 
Sbjct: 172 LFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDDSTNRLEESLNLFEEICNSP 231

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W +   +ILFLNK+DL  EK+K  K  L DYF E+             G+      A  +
Sbjct: 232 WFKNTPIILFLNKKDLFEEKLK--KGPLSDYFPEYE------------GDPNDYESASKY 277

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IR++FL ++  + +     Y HFT A DTEN+R VF   +DII + +L++  LL
Sbjct: 278 IRNKFLELNKNNSE--RKIYTHFTNATDTENVRFVFEAVKDIILQNNLKESGLL 329

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 49.1 bits (118), Expect = 8e-08
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           ++DVGGQ   R  W   F +  A+IFV   +      R+     R+ E+ +   ++ N  
Sbjct: 62  VWDVGGQESLRPLWRNYFPNTDAVIFVVDSA-----DRD-----RIEEAKEELHALLNEE 111

Query: 61  WLRTISVILFLNKQDL 76
            L    +++  NKQDL
Sbjct: 112 ELADAPLLILANKQDL 127

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 10/76 (13%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           ++DVGGQ   R  W     +   +++V   S             RL ES    K I  N 
Sbjct: 48  VWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE----------ARLDESQKELKHILKNE 97

Query: 61  WLRTISVILFLNKQDL 76
            ++ + V+L  NKQDL
Sbjct: 98  HIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 10/78 (12%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           ++DVGGQ   R  W   + +   +IFV   S      RE     R+ E+ +    + N  
Sbjct: 47  VWDVGGQDKIRPLWKHYYENTDGLIFVVDSSD-----RE-----RIEEAKNELHKLLNEE 96

Query: 61  WLRTISVILFLNKQDLLA 78
            L+   +++  NKQDL  
Sbjct: 97  ELKGAPLLILANKQDLPG 114

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 13/78 (16%)

Query: 1   MF-DVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPT-QNRLRESLDLFKSIWN 58
           MF D+GGQ + R  W + + +   +I+V            D T + R  ES   F+ + N
Sbjct: 54  MFWDLGGQEELRSLWDKYYAESHGVIYVI-----------DSTDRERFNESKSAFEKVIN 102

Query: 59  NRWLRTISVILFLNKQDL 76
           N  L  + +++  NKQDL
Sbjct: 103 NEALEGVPLLVLANKQDL 120

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 44.0 bits (104), Expect = 6e-06
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           ++DVGGQ   R  W   +     +IFV   +           ++R+ E+      I N+R
Sbjct: 57  VWDVGGQDKIRPLWRHYYTGTQGLIFVVDSAD----------RDRIDEARQELHRIINDR 106

Query: 61  WLRTISVILFLNKQDL 76
            +R   +++F NKQDL
Sbjct: 107 EMRDALLLVFANKQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 10/75 (13%)

Query: 3   DVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWL 62
           D+GGQR  R  W   F +   +I+V   +           + R  E+      +     L
Sbjct: 65  DIGGQRKIRPYWRNYFENTDVLIYVIDSAD----------RKRFEEAGQELVELLEEEKL 114

Query: 63  RTISVILFLNKQDLL 77
             + V++F NKQDLL
Sbjct: 115 AGVPVLVFANKQDLL 129

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           ++DVGGQ   R  W   + +   +IFV   +           ++R+ E+ +    + N  
Sbjct: 61  VWDVGGQDKIRPLWRHYYTNTQGLIFVVDSND----------RDRIDEAREELHRMLNED 110

Query: 61  WLRTISVILFLNKQDL 76
            LR   +++F NKQDL
Sbjct: 111 ELRDAVILVFANKQDL 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 10/75 (13%)

Query: 2   FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW 61
           FD+GG    RR W   F +V  I+F+   +        DP   R +ES +   S+ N+  
Sbjct: 68  FDLGGHEQARRVWKDYFPEVDGIVFLVDAA--------DP--ERFQESKEELDSLLNDEE 117

Query: 62  LRTISVILFLNKQDL 76
           L  + +++  NK D 
Sbjct: 118 LANVPILILGNKIDK 132

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 37.8 bits (88), Expect = 8e-04
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 10/76 (13%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           ++DVGGQ   R  W   F +   +IFV   +      RE     R+ E+ +  + + N  
Sbjct: 48  VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND-----RE-----RIGEAREELQRMLNED 97

Query: 61  WLRTISVILFLNKQDL 76
            LR   +++F NKQDL
Sbjct: 98  ELRDAVLLVFANKQDL 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 17/100 (17%), Positives = 25/100 (25%), Gaps = 18/100 (18%)

Query: 1   MFDVGGQRDERRKWI-----QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKS 55
           + D  G  +                   I+ V   +                        
Sbjct: 51  LVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAK-------------LL 97

Query: 56  IWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEF 95
           I        I +IL  NK DLL E+      RLE+  +  
Sbjct: 98  ILRRLRKEGIPIILVGNKIDLLEEREVEELLRLEELAKIL 137

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 18/80 (22%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKS----I 56
           M+D+GGQ   R  W   + +  A+I V            D T    RE L L K     +
Sbjct: 63  MWDIGGQESLRSSWNTYYTNTDAVILVI-----------DSTD---RERLPLTKEELYKM 108

Query: 57  WNNRWLRTISVILFLNKQDL 76
             +  LR   +++  NKQDL
Sbjct: 109 LAHEDLRKAVLLVLANKQDL 128

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           ++DVGGQ   R  W   F +   +IFV           +   ++R+ E+ D    + N  
Sbjct: 65  VWDVGGQDKIRPLWRHYFQNTQGLIFVV----------DSNDRDRVVEARDELHRMLNED 114

Query: 61  WLRTISVILFLNKQDL 76
            LR   +++F NKQDL
Sbjct: 115 ELRDAVLLVFANKQDL 130

Length = 181

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 36.7 bits (85), Expect = 0.003
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 10/76 (13%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           M+DVGGQ   R  W   + +   +IFV        V   D    R+ ++ +  + + +  
Sbjct: 65  MWDVGGQDKLRPLWRHYYQNTNGLIFV--------VDSNDR--ERIGDAREELERMLSED 114

Query: 61  WLRTISVILFLNKQDL 76
            LR   +++F NKQDL
Sbjct: 115 ELRDAVLLVFANKQDL 130

Length = 182

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
KOG0082|consensus	354		100.0
KOG0099|consensus	379		100.0
KOG0085|consensus	359		100.0
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	100.0
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	100.0
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	100.0
KOG0084|consensus	205		99.94
KOG0092|consensus	200		99.93
KOG0078|consensus	207		99.91
KOG0086|consensus	214		99.91
KOG0087|consensus	222		99.9
KOG0080|consensus	209		99.89
KOG0094|consensus	221		99.89
KOG0070|consensus	181		99.89
KOG0098|consensus	216		99.89
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.88
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.88
KOG0091|consensus	213		99.88
PLN00223	181	ADP-ribosylation factor; Provisional	99.88
KOG0394|consensus	210		99.88
KOG0071|consensus	180		99.87
KOG0088|consensus	218		99.87
KOG0079|consensus	198		99.87
KOG0093|consensus	193		99.87
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.86
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.85
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.85
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.85
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.85
PTZ00099	176	rab6; Provisional	99.85
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.85
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.85
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.85
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.84
PTZ00133	182	ADP-ribosylation factor; Provisional	99.84
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.84
KOG0081|consensus	219		99.84
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.83
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.83
KOG0095|consensus	213		99.83
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.83
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.83
KOG0083|consensus	192		99.82
KOG0097|consensus	215		99.82
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.82
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.82
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.82
KOG0073|consensus	185		99.82
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.82
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.81
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.8
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.8
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.8
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.8
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.8
PTZ00369	189	Ras-like protein; Provisional	99.8
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.8
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.79
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.79
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.79
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.79
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.79
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.79
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.79
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.79
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.79
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.78
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.78
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.78
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.78
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.78
KOG0075|consensus	186		99.77
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.77
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.77
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.77
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.77
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.77
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.77
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.77
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.76
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.76
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.76
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.76
KOG0076|consensus	197		99.76
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.76
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.76
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.76
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.75
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.75
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.75
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.75
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.75
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.75
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.75
PLN03110	216	Rab GTPase; Provisional	99.74
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.74
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.74
KOG0072|consensus	182		99.74
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.73
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.73
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.73
PLN03108	210	Rab family protein; Provisional	99.73
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.73
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.72
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.72
PLN03118	211	Rab family protein; Provisional	99.72
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.72
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.71
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.71
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.7
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.7
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.7
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.7
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.69
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.69
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.69
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.69
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.69
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.68
KOG0074|consensus	185		99.68
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.68
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.68
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.67
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.66
KOG0395|consensus	196		99.66
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.66
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.65
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.65
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.64
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.63
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.62
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.61
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.61
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.6
KOG0393|consensus	198		99.59
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.59
KOG4252|consensus	246		99.58
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.58
PLN00023	334	GTP-binding protein; Provisional	99.56
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.55
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.53
COG1100	219	GTPase SAR1 and related small G proteins [General	99.51
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.45
KOG4423|consensus	229		99.43
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.4
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.39
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.36
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.35
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.33
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.32
PRK12299	335	obgE GTPase CgtA; Reviewed	99.32
cd00881	189	GTP_translation_factor GTP translation factor fami	99.32
KOG0096|consensus	216		99.31
PRK04213	201	GTP-binding protein; Provisional	99.31
KOG1673|consensus	205		99.31
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.3
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.28
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.27
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.27
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.24
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.24
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.23
COG2229	187	Predicted GTPase [General function prediction only	99.22
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.22
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.22
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.21
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.21
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.2
PRK03003	472	GTP-binding protein Der; Reviewed	99.18
KOG0077|consensus	193		99.18
PRK03003	472	GTP-binding protein Der; Reviewed	99.12
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.12
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.12
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.09
PRK05433	600	GTP-binding protein LepA; Provisional	99.09
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.08
PRK15494	339	era GTPase Era; Provisional	99.08
KOG3883|consensus	198		99.08
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.08
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.07
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.04
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.03
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.03
CHL00189	742	infB translation initiation factor 2; Provisional	99.03
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.03
PRK12296	500	obgE GTPase CgtA; Reviewed	99.01
PRK05306	787	infB translation initiation factor IF-2; Validated	99.01
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.0
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.0
PRK12297	424	obgE GTPase CgtA; Reviewed	99.0
PRK04004	586	translation initiation factor IF-2; Validated	99.0
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	98.98
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	98.97
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.95
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	98.95
PRK11058	426	GTPase HflX; Provisional	98.95
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	98.93
PRK10218	607	GTP-binding protein; Provisional	98.92
PRK00093	435	GTP-binding protein Der; Reviewed	98.91
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	98.9
PRK00093	435	GTP-binding protein Der; Reviewed	98.89
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.88
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	98.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.85
PRK00089	292	era GTPase Era; Reviewed	98.82
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.81
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.81
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.8
PRK12298	390	obgE GTPase CgtA; Reviewed	98.8
PRK12317	425	elongation factor 1-alpha; Reviewed	98.79
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	98.78
KOG0090|consensus	238		98.78
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.77
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.76
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	98.73
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	98.72
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.69
PRK14845	1049	translation initiation factor IF-2; Provisional	98.68
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.68
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	98.68
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.64
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.63
PRK13768	253	GTPase; Provisional	98.6
PRK13351	687	elongation factor G; Reviewed	98.6
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.59
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.59
cd01896	233	DRG The developmentally regulated GTP-binding prot	98.54
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.53
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.51
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.48
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.46
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.46
TIGR00503	527	prfC peptide chain release factor 3. This translat	98.45
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.44
PRK12736	394	elongation factor Tu; Reviewed	98.43
KOG1144|consensus	1064		98.36
PRK00098	298	GTPase RsgA; Reviewed	98.35
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.34
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.34
PLN00043	447	elongation factor 1-alpha; Provisional	98.33
PRK12740	668	elongation factor G; Reviewed	98.32
KOG0462|consensus	650		98.28
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.27
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.25
PRK12289	352	GTPase RsgA; Reviewed	98.24
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.18
PRK12735	396	elongation factor Tu; Reviewed	98.17
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.1
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.06
PRK12739	691	elongation factor G; Reviewed	98.06
KOG1707|consensus	625		98.03
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.02
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.02
PRK12288	347	GTPase RsgA; Reviewed	98.02
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.0
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	97.98
CHL00071	409	tufA elongation factor Tu	97.97
PLN03126	478	Elongation factor Tu; Provisional	97.96
KOG1489|consensus	366		97.96
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.88
PTZ00141	446	elongation factor 1- alpha; Provisional	97.88
KOG1532|consensus	366		97.87
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.87
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.85
PRK09866	741	hypothetical protein; Provisional	97.82
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.81
COG1160	444	Predicted GTPases [General function prediction onl	97.8
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	97.8
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	97.76
PRK00049	396	elongation factor Tu; Reviewed	97.74
PRK00007	693	elongation factor G; Reviewed	97.74
COG1159	298	Era GTPase [General function prediction only]	97.67
PLN03127	447	Elongation factor Tu; Provisional	97.63
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	97.62
PRK13796	365	GTPase YqeH; Provisional	97.55
COG0536	369	Obg Predicted GTPase [General function prediction	97.52
COG1160	444	Predicted GTPases [General function prediction onl	97.5
COG2262	411	HflX GTPases [General function prediction only]	97.5
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.47
KOG3886|consensus	295		97.45
KOG1145|consensus	683		97.42
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.28
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.27
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	97.24
COG0486	454	ThdF Predicted GTPase [General function prediction	97.15
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	97.07
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	96.96
TIGR00101	199	ureG urease accessory protein UreG. This model rep	96.92
PRK07560	731	elongation factor EF-2; Reviewed	96.92
COG1217	603	TypA Predicted membrane GTPase involved in stress	96.92
PTZ00416	836	elongation factor 2; Provisional	96.89
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.87
PLN00116	843	translation elongation factor EF-2 subunit; Provis	96.86
KOG1490|consensus	620		96.84
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	96.84
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	96.77
PRK01889	356	GTPase RsgA; Reviewed	96.66
PRK09563	287	rbgA GTPase YlqF; Reviewed	96.63
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.35
KOG0705|consensus	749		96.27
COG0218	200	Predicted GTPase [General function prediction only	96.24
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	96.19
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.09
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	96.07
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.0
KOG0468|consensus	971		96.0
KOG1423|consensus	379		95.85
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	95.4
COG3276	447	SelB Selenocysteine-specific translation elongatio	95.29
KOG3905|consensus	473		95.29
COG1084	346	Predicted GTPase [General function prediction only	95.26
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	95.24
KOG0458|consensus	603		95.05
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	94.91
KOG3887|consensus	347		94.87
COG5258	527	GTPBP1 GTPase [General function prediction only]	94.78
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	94.69
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	94.67
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	94.54
KOG1143|consensus	591		94.46
COG1162	301	Predicted GTPases [General function prediction onl	94.22
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	93.58
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	93.53
KOG1424|consensus	562		93.43
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	93.23
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	92.91
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	92.67
KOG1191|consensus	531		92.66
COG3596	296	Predicted GTPase [General function prediction only	92.21
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	91.41
cd03110	179	Fer4_NifH_child This protein family's function is	90.88
KOG1707|consensus	625		90.8
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	90.61
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	90.26
COG0050	394	TufB GTPases - translation elongation factors [Tra	89.27
KOG2423|consensus	572		89.1
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	88.97
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	86.92
KOG0447|consensus	980		86.87
PRK09602	396	translation-associated GTPase; Reviewed	86.79
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	86.2
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	85.59
KOG0461|consensus	522		84.76
COG1161	322	Predicted GTPases [General function prediction onl	83.77
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	82.93
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	81.95
PHA02518	211	ParA-like protein; Provisional	80.38

>KOG0082|consensus

Probab=100.00  E-value=3.4e-41  Score=271.15  Aligned_cols=156  Identities=48%  Similarity=0.834  Sum_probs=149.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ++|+|||+++|++|.|||.++++||||+++|+|||++.||...||+.+++.+|+++++++++.+++|+||+||.|||+++
T Consensus       199 ~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEK  278 (354)
T KOG0082|consen  199 MFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEK  278 (354)
T ss_pred             EEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      +.  +.+++.|||+|.|            . +++++|..||..+|.++++   ...+++|+|+|||+|++||+.+|.++.
T Consensus       279 i~--~~~~~~~Fpdy~G------------~-~~~~~a~~yI~~kF~~l~~---~~~k~iy~h~T~AtDT~nv~~vf~av~  340 (354)
T KOG0082|consen  279 IK--KVPLTDCFPDYKG------------V-NTYEEAAKYIRKKFEELNK---NKDKKIYVHFTCATDTQNVQFVFDAVT  340 (354)
T ss_pred             hc--cCchhhhCcCCCC------------C-CChHHHHHHHHHHHHHHhc---ccCCcceEEEEeeccHHHHHHHHHHHH
Confidence            98  8999999999995            3 5788999999999999998   444899999999999999999999999


Q ss_pred             HHHHHhhhhhccCC
Q psy12099        161 DIIQRMHLRQYELL  174 (174)
Q Consensus       161 ~~i~~~~~~~~~l~  174 (174)
                      ++|++.+++..||+
T Consensus       341 d~Ii~~nlk~~gl~  354 (354)
T KOG0082|consen  341 DTIIQNNLKDAGLI  354 (354)
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999999999985

>KOG0099|consensus

Probab=100.00  E-value=1.1e-38  Score=245.03  Aligned_cols=174  Identities=89%  Similarity=1.447  Sum_probs=169.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ++|+|||+-.|++|..+|.++.+||||+.+|+|++++.||++.|++.+++.+|+++-++.|+..+.+||++||+|+..++
T Consensus       206 MfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDllaeK  285 (379)
T KOG0099|consen  206 MFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEK  285 (379)
T ss_pred             eeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      +..+++.+.+|||+|.+...|..|.+..|.+..+..|+.||.+.|..+.++++..++..|.|+|||.|++||+.+|.++.
T Consensus       286 i~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVFnDcr  365 (379)
T KOG0099|consen  286 ILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCR  365 (379)
T ss_pred             HHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHHHHHH
Confidence            99888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhccCC
Q psy12099        161 DIIQRMHLRQYELL  174 (174)
Q Consensus       161 ~~i~~~~~~~~~l~  174 (174)
                      +.|++.||+.++||
T Consensus       366 diIqr~hlrqyeLl  379 (379)
T KOG0099|consen  366 DIIQRMHLRQYELL  379 (379)
T ss_pred             HHHHHHHHHHhccC
Confidence            99999999999997

>KOG0085|consensus

Probab=100.00  E-value=6.5e-38  Score=237.53  Aligned_cols=157  Identities=50%  Similarity=0.855  Sum_probs=150.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +.|+|||+++|++|.|||+++.+++|.+.+|+|||++.|..+.|++++++.+|..++.-||+.+.++++++||.|+.+++
T Consensus       203 mvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDlLEek  282 (359)
T KOG0085|consen  203 MVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEK  282 (359)
T ss_pred             eeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhhhhhh
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      +.  .+.+-.|||+|.            |+..+.++|..||.+.|.+++.   ...+.+++|+|||+|++||+.+|.++.
T Consensus       283 I~--ySHl~~YFPe~~------------GP~qDa~AAreFILkm~~d~nP---d~dKii~SHfTcATDT~NIRfVFaaVk  345 (359)
T KOG0085|consen  283 IL--YSHLADYFPEFD------------GPKQDAQAAREFILKMYVDMNP---DSDKIIYSHFTCATDTENIRFVFAAVK  345 (359)
T ss_pred             hh--HHHHHHhCcccC------------CCcccHHHHHHHHHHHHHhhCC---CccceeeeeeeecccchhHHHHHHHHH
Confidence            99  889999999999            5677899999999999999998   677889999999999999999999999


Q ss_pred             HHHHHhhhhhccCC
Q psy12099        161 DIIQRMHLRQYELL  174 (174)
Q Consensus       161 ~~i~~~~~~~~~l~  174 (174)
                      ++|++.+|++++|+
T Consensus       346 DtiLq~~LkE~NLv  359 (359)
T KOG0085|consen  346 DTILQLNLKEYNLV  359 (359)
T ss_pred             HHHHHhhhHhhccC
Confidence            99999999999985

>cd00066 G-alpha G protein alpha subunit

Probab=100.00  E-value=3.8e-36  Score=242.94  Aligned_cols=153  Identities=56%  Similarity=0.937  Sum_probs=144.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||+|||+++|++|.+||.+++++|||+|+|+||+.+.|+...+++.+++..|+.+++++.+.++|++|++||+|++.++
T Consensus       165 ~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~k  244 (317)
T cd00066         165 MFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEK  244 (317)
T ss_pred             EECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ++  ..+++.+||+|.+            .++++++|.+||..+|.++++   ..++.+|.|+|||+|+++|+.+|+.+.
T Consensus       245 i~--~~~l~~~fp~y~g------------~~~~~~~~~~~i~~~F~~~~~---~~~~~~~~~~t~a~Dt~~i~~vf~~v~  307 (317)
T cd00066         245 IK--KSPLTDYFPDYTG------------PPNDYEEAAKFIRKKFLDLNR---NPNKEIYPHFTCATDTENIRFVFDAVK  307 (317)
T ss_pred             hc--CCCccccCCCCCC------------CCCCHHHHHHHHHHHHHHhhc---CCCCeEEEEeccccchHHHHHHHHHHH
Confidence            99  6799999999984            345799999999999999987   356889999999999999999999999


Q ss_pred             HHHHHhhhhh
Q psy12099        161 DIIQRMHLRQ  170 (174)
Q Consensus       161 ~~i~~~~~~~  170 (174)
                      +.|+++++++
T Consensus       308 ~~i~~~~l~~  317 (317)
T cd00066         308 DIILQNNLKD  317 (317)
T ss_pred             HHHHHHHhcC
Confidence            9999998863

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>smart00275 G_alpha G protein alpha subunit

Probab=100.00  E-value=6e-36  Score=243.75  Aligned_cols=155  Identities=52%  Similarity=0.885  Sum_probs=145.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||+|||+++|++|.+||.++++||||+|+|+||++++|+.+.+++.+++..|+.+++++.+.++|++|++||.|++.++
T Consensus       188 ~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~K  267 (342)
T smart00275      188 MFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEK  267 (342)
T ss_pred             EEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      +.  ..++.++||+|+|            . +++++|.+||.++|.++++.  ..++.+|.|+|||+|+.+++.+|+.+.
T Consensus       268 l~--~~~l~~~fp~y~g------------~-~~~~~~~~yi~~~F~~~~~~--~~~r~~y~h~t~a~Dt~~~~~v~~~v~  330 (342)
T smart00275      268 IK--KVPLVDYFPDYKG------------P-NDYEAAAKFIKQKFLRLNRN--SSRKSIYHHFTCATDTRNIRVVFDAVK  330 (342)
T ss_pred             hC--CCchhccCCCCCC------------C-CCHHHHHHHHHHHHHHhccC--CCCceEEEEEeeecccHHHHHHHHHHH
Confidence            99  6699999999985            2 47899999999999999872  145789999999999999999999999


Q ss_pred             HHHHHhhhhhcc
Q psy12099        161 DIIQRMHLRQYE  172 (174)
Q Consensus       161 ~~i~~~~~~~~~  172 (174)
                      +.|++++++..|
T Consensus       331 ~~I~~~~l~~~~  342 (342)
T smart00275      331 DIILQRNLKDAG  342 (342)
T ss_pred             HHHHHHHHHhcC
Confidence            999999998765

Subunit of G proteins that contains the guanine nucleotide binding site

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=100.00  E-value=8.1e-34  Score=235.23  Aligned_cols=149  Identities=54%  Similarity=0.924  Sum_probs=135.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ++|+|||+.+|++|.+||.++++||||+++|+||++++|+...|++.+++.+|+++++++++.++|++|++||.|++.++
T Consensus       240 ~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~K  319 (389)
T PF00503_consen  240 LIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEK  319 (389)
T ss_dssp             EEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHH
T ss_pred             eecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhccccc-hhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         81 VKAGKSR-LEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        81 ~~~~~~~-l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      +.  ..+ ++++||+|.|           +.+++++.|.+||.++|.+++++... .+.+|+|.|||+|+++|+.+|+.|
T Consensus       320 l~--~~~~l~~~fp~y~g-----------~~~~~~~~~~~~i~~~f~~~~~~~~~-~~~~~~h~t~a~d~~~~~~v~~~v  385 (389)
T PF00503_consen  320 LK--KGPKLSKYFPDYTG-----------DRPNDVDSAIKFIKNKFLRLNRNNSP-SRRIYVHFTCATDTENIRKVFNAV  385 (389)
T ss_dssp             TT--TSSCGGGTSTTGGS-----------H-TSSHHHHHHHHHHHHHCTHSTTTT-CS-EEEEEESTTSHHHHHHHHHHH
T ss_pred             cc--CCCchHhhCCCCCC-----------CcccCHHHHHHHHHHHHHHhccCCCC-CcceEEEEeeecccHHHHHHHHHh
Confidence            99  555 9999999984           12468999999999999999984311 188999999999999999999999


Q ss_pred             HHHH
Q psy12099        160 RDII  163 (174)
Q Consensus       160 ~~~i  163 (174)
                      .++|
T Consensus       386 ~~~i  389 (389)
T PF00503_consen  386 KDII  389 (389)
T ss_dssp             HHHH
T ss_pred             cCcC
Confidence            9886

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0084|consensus

Probab=99.94  E-value=5.8e-27  Score=173.19  Aligned_cols=113  Identities=20%  Similarity=0.180  Sum_probs=97.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||||||||||++..+|||+|+|||+|||+          ++..+|.....|+.++-.. ...++|.+|||||+|+.+.+
T Consensus        62 IWDTAGQERFrtit~syYR~ahGii~vyDi----------T~~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~  130 (205)
T KOG0084|consen   62 IWDTAGQERFRTITSSYYRGAHGIIFVYDI----------TKQESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLTEKR  130 (205)
T ss_pred             eeeccccHHHhhhhHhhccCCCeEEEEEEc----------ccHHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccHhhe
Confidence            799999999999999999999999999999          8999999999999998655 45789999999999998876


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCccee-eeecccccchhHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCY-PHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~-~~~tsA~d~~~i~~~f~~~  159 (174)
                      ..                              +.++|..|.             ....+. +.+|||+++.||+++|..+
T Consensus       131 ~v------------------------------~~~~a~~fa-------------~~~~~~~f~ETSAK~~~NVe~~F~~l  167 (205)
T KOG0084|consen  131 VV------------------------------STEEAQEFA-------------DELGIPIFLETSAKDSTNVEDAFLTL  167 (205)
T ss_pred             ec------------------------------CHHHHHHHH-------------HhcCCcceeecccCCccCHHHHHHHH
Confidence            44                              245565552             233455 8899999999999999999


Q ss_pred             HHHHHHhh
Q psy12099        160 RDIIQRMH  167 (174)
Q Consensus       160 ~~~i~~~~  167 (174)
                      +..|..+.
T Consensus       168 a~~lk~~~  175 (205)
T KOG0084|consen  168 AKELKQRK  175 (205)
T ss_pred             HHHHHHhc
Confidence            99998763

>KOG0092|consensus

Probab=99.93  E-value=1.7e-26  Score=170.13  Aligned_cols=113  Identities=18%  Similarity=0.186  Sum_probs=98.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||||||+|+++-+.|||+|+++|+|||+          ++.++|..+..|+.++-+... +++.|.|+|||+||.+.+
T Consensus        58 IWDTAGQERy~slapMYyRgA~AAivvYDi----------t~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R  126 (200)
T KOG0092|consen   58 IWDTAGQERYHSLAPMYYRGANAAIVVYDI----------TDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERR  126 (200)
T ss_pred             EEEcCCcccccccccceecCCcEEEEEEec----------ccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcc
Confidence            799999999999999999999999999999          999999999999999866644 889999999999998744


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              .+++|..|             +.+..+.+++||||++.||+++|..|.
T Consensus       127 ~V------------------------------~~~ea~~y-------------Ae~~gll~~ETSAKTg~Nv~~if~~Ia  163 (200)
T KOG0092|consen  127 EV------------------------------EFEEAQAY-------------AESQGLLFFETSAKTGENVNEIFQAIA  163 (200)
T ss_pred             cc------------------------------cHHHHHHH-------------HHhcCCEEEEEecccccCHHHHHHHHH
Confidence            22                              25667777             334568899999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.|....
T Consensus       164 ~~lp~~~  170 (200)
T KOG0092|consen  164 EKLPCSD  170 (200)
T ss_pred             HhccCcc
Confidence            9887543

>KOG0078|consensus

Probab=99.91  E-value=1.2e-24  Score=162.71  Aligned_cols=112  Identities=19%  Similarity=0.126  Sum_probs=94.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||++||.+...||++|.++++|||+          ++..+|+.+..|++.+-.+ ...++|++|||||+|+..++
T Consensus        65 iWDtaGQerf~ti~~sYyrgA~gi~LvyDi----------tne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R  133 (207)
T KOG0078|consen   65 IWDTAGQERFRTITTAYYRGAMGILLVYDI----------TNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKR  133 (207)
T ss_pred             EEEcccchhHHHHHHHHHhhcCeeEEEEEc----------cchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccc
Confidence            699999999999999999999999999999          8999999999988887555 45689999999999998755


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..    +                          .+.+.++             +....+.++||||+++.||.++|..++
T Consensus       134 ~V----~--------------------------~e~ge~l-------------A~e~G~~F~EtSAk~~~NI~eaF~~La  170 (207)
T KOG0078|consen  134 QV----S--------------------------KERGEAL-------------AREYGIKFFETSAKTNFNIEEAFLSLA  170 (207)
T ss_pred             cc----c--------------------------HHHHHHH-------------HHHhCCeEEEccccCCCCHHHHHHHHH
Confidence            33    1                          2223333             223458899999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.|+.+
T Consensus       171 ~~i~~k  176 (207)
T KOG0078|consen  171 RDILQK  176 (207)
T ss_pred             HHHHhh
Confidence            999965

>KOG0086|consensus

Probab=99.91  E-value=4.8e-24  Score=152.17  Aligned_cols=112  Identities=21%  Similarity=0.234  Sum_probs=99.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|||+||+....||+++.++++|||+          +++++|++.-.|+.++.. ...+++.++|+|||.||..++
T Consensus        62 IWDTAGQErFRSVtRsYYRGAAGAlLVYD~----------TsrdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~R  130 (214)
T KOG0086|consen   62 IWDTAGQERFRSVTRSYYRGAAGALLVYDI----------TSRDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPER  130 (214)
T ss_pred             EeecccHHHHHHHHHHHhccccceEEEEec----------cchhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChhh
Confidence            799999999999999999999999999999          999999999999998743 356789999999999997765


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      -.                              ++.+|..|             +..+.+.+++|||++|+||++.|-.+.
T Consensus       131 ~V------------------------------tflEAs~F-------------aqEnel~flETSa~TGeNVEEaFl~c~  167 (214)
T KOG0086|consen  131 EV------------------------------TFLEASRF-------------AQENELMFLETSALTGENVEEAFLKCA  167 (214)
T ss_pred             hh------------------------------hHHHHHhh-------------hcccceeeeeecccccccHHHHHHHHH
Confidence            33                              36677777             556778999999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      .+|+.+
T Consensus       168 ~tIl~k  173 (214)
T KOG0086|consen  168 RTILNK  173 (214)
T ss_pred             HHHHHH
Confidence            999976

>KOG0087|consensus

Probab=99.90  E-value=3.9e-24  Score=159.76  Aligned_cols=115  Identities=18%  Similarity=0.211  Sum_probs=98.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||||||||||.+...||+++.|+++|||+          +...+|+....|+.++..+ ..++++|+|+|||+||...+
T Consensus        67 IWDTAGQERyrAitSaYYrgAvGAllVYDI----------Tr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~lr  135 (222)
T KOG0087|consen   67 IWDTAGQERYRAITSAYYRGAVGALLVYDI----------TRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHLR  135 (222)
T ss_pred             eecccchhhhccccchhhcccceeEEEEec----------hhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhcc
Confidence            799999999999999999999999999999          8999999999999998776 45799999999999997643


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..++++.|             +....+++++|||+++.||+.+|+.+.
T Consensus       136 aV------------------------------~te~~k~~-------------Ae~~~l~f~EtSAl~~tNVe~aF~~~l  172 (222)
T KOG0087|consen  136 AV------------------------------PTEDGKAF-------------AEKEGLFFLETSALDATNVEKAFERVL  172 (222)
T ss_pred             cc------------------------------chhhhHhH-------------HHhcCceEEEecccccccHHHHHHHHH
Confidence            22                              13445655             334568999999999999999999999


Q ss_pred             HHHHHhhhh
Q psy12099        161 DIIQRMHLR  169 (174)
Q Consensus       161 ~~i~~~~~~  169 (174)
                      ..|.+...+
T Consensus       173 ~~I~~~vs~  181 (222)
T KOG0087|consen  173 TEIYKIVSK  181 (222)
T ss_pred             HHHHHHHHH
Confidence            999877544

>KOG0080|consensus

Probab=99.89  E-value=1.4e-23  Score=150.72  Aligned_cols=112  Identities=21%  Similarity=0.170  Sum_probs=96.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||||||+||.+.+.|||++.++|.|||+          +.+++|...-.|..++-......++..+|||||.|...++
T Consensus        64 iWDTAGqErFRtLTpSyyRgaqGiIlVYDV----------T~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R  133 (209)
T KOG0080|consen   64 IWDTAGQERFRTLTPSYYRGAQGIILVYDV----------TSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESER  133 (209)
T ss_pred             EEeccchHhhhccCHhHhccCceeEEEEEc----------cchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcc
Confidence            799999999999999999999999999999          8999999998898888666666788999999999976554


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              +-++..+|             ++++...++++||++.+||+.+|+++.
T Consensus       134 ~V------------------------------~reEG~kf-------------Ar~h~~LFiE~SAkt~~~V~~~Feelv  170 (209)
T KOG0080|consen  134 VV------------------------------DREEGLKF-------------ARKHRCLFIECSAKTRENVQCCFEELV  170 (209)
T ss_pred             cc------------------------------cHHHHHHH-------------HHhhCcEEEEcchhhhccHHHHHHHHH
Confidence            33                              23445566             345678899999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.|++
T Consensus       171 eKIi~  175 (209)
T KOG0080|consen  171 EKIIE  175 (209)
T ss_pred             HHHhc
Confidence            99885

>KOG0094|consensus

Probab=99.89  E-value=4.5e-23  Score=152.40  Aligned_cols=113  Identities=17%  Similarity=0.194  Sum_probs=94.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||||||||||++.+.|+|++.++|+|||+          ++.++|+....|++++.+.....++-|+|||||.||.+++
T Consensus        75 lWDTAGQERFrslipsY~Rds~vaviVyDi----------t~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr  144 (221)
T KOG0094|consen   75 LWDTAGQERFRSLIPSYIRDSSVAVIVYDI----------TDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR  144 (221)
T ss_pred             EEecccHHHHhhhhhhhccCCeEEEEEEec----------cccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchh
Confidence            699999999999999999999999999999          8999999999999999988877779999999999998764


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      -.    ..                          +++..-             +++....+.+|||+.|.||+++|..|+
T Consensus       145 qv----s~--------------------------eEg~~k-------------Akel~a~f~etsak~g~NVk~lFrrIa  181 (221)
T KOG0094|consen  145 QV----SI--------------------------EEGERK-------------AKELNAEFIETSAKAGENVKQLFRRIA  181 (221)
T ss_pred             hh----hH--------------------------HHHHHH-------------HHHhCcEEEEecccCCCCHHHHHHHHH
Confidence            22    10                          111100             223446788999999999999999998


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      ..+...
T Consensus       182 a~l~~~  187 (221)
T KOG0094|consen  182 AALPGM  187 (221)
T ss_pred             HhccCc
Confidence            877654

>KOG0070|consensus

Probab=99.89  E-value=4.9e-23  Score=151.13  Aligned_cols=116  Identities=22%  Similarity=0.390  Sum_probs=98.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||+|||+++|.+|.+||++.+++|||+|.          ++++|+.++.+.+..+++++...++|+++++||+|++.+.
T Consensus        65 vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS----------~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al  134 (181)
T KOG0070|consen   65 VWDVGGQEKLRPLWKHYFQNTQGLIFVVDS----------SDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL  134 (181)
T ss_pred             EEecCCCcccccchhhhccCCcEEEEEEeC----------CcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC
Confidence            699999999999999999999999999999          8999999999999999999988999999999999998764


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      -.   ..+.+.+                                  .+.+   .+.+.++++.|||.+|+++.+.++++.
T Consensus       135 s~---~ei~~~L----------------------------------~l~~---l~~~~w~iq~~~a~~G~GL~egl~wl~  174 (181)
T KOG0070|consen  135 SA---AEITNKL----------------------------------GLHS---LRSRNWHIQSTCAISGEGLYEGLDWLS  174 (181)
T ss_pred             CH---HHHHhHh----------------------------------hhhc---cCCCCcEEeeccccccccHHHHHHHHH
Confidence            22   1222111                                  1111   345889999999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.++
T Consensus       175 ~~~~~~  180 (181)
T KOG0070|consen  175 NNLKKR  180 (181)
T ss_pred             HHHhcc
Confidence            988653

>KOG0098|consensus

Probab=99.89  E-value=5e-23  Score=151.13  Aligned_cols=113  Identities=18%  Similarity=0.188  Sum_probs=96.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|||+||+....||+++.|+|+|||+          +.+++|.....|+.++.++. .+|+.|+|+|||+||...+
T Consensus        59 iwDtaGqe~frsv~~syYr~a~GalLVydi----------t~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR  127 (216)
T KOG0098|consen   59 IWDTAGQESFRSVTRSYYRGAAGALLVYDI----------TRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARR  127 (216)
T ss_pred             EEecCCcHHHHHHHHHHhccCcceEEEEEc----------cchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccc
Confidence            799999999999999999999999999999          99999999999999997763 5799999999999998655


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              +-++...|             ++.+.+-+.+|||++++||+++|....
T Consensus       128 ~V------------------------------s~EEGeaF-------------A~ehgLifmETSakt~~~VEEaF~nta  164 (216)
T KOG0098|consen  128 EV------------------------------SKEEGEAF-------------AREHGLIFMETSAKTAENVEEAFINTA  164 (216)
T ss_pred             cc------------------------------cHHHHHHH-------------HHHcCceeehhhhhhhhhHHHHHHHHH
Confidence            22                              12333444             223556677999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      ..|.++.
T Consensus       165 ~~Iy~~~  171 (216)
T KOG0098|consen  165 KEIYRKI  171 (216)
T ss_pred             HHHHHHH
Confidence            9998764

>cd04120 Rab12 Rab12 subfamily

Probab=99.88  E-value=2.1e-22  Score=153.31  Aligned_cols=113  Identities=17%  Similarity=0.118  Sum_probs=88.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||++|+.+|..||++++++|+|||+          ++.++|+++..|+..+. .....++|++|+|||+|+..++
T Consensus        53 iwDtaGqe~~~~l~~~y~~~ad~iIlVfDv----------td~~Sf~~l~~w~~~i~-~~~~~~~piilVgNK~DL~~~~  121 (202)
T cd04120          53 IWDTAGQERFNSITSAYYRSAKGIILVYDI----------TKKETFDDLPKWMKMID-KYASEDAELLLVGNKLDCETDR  121 (202)
T ss_pred             EEeCCCchhhHHHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHH-HhCCCCCcEEEEEECccccccc
Confidence            699999999999999999999999999999          89999999998887654 3345679999999999996432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.++...            .+.+.+++|||++|.||.++|.++.
T Consensus       122 ~v------------------------------~~~~~~~~a~~------------~~~~~~~etSAktg~gV~e~F~~l~  159 (202)
T cd04120         122 EI------------------------------SRQQGEKFAQQ------------ITGMRFCEASAKDNFNVDEIFLKLV  159 (202)
T ss_pred             cc------------------------------CHHHHHHHHHh------------cCCCEEEEecCCCCCCHHHHHHHHH
Confidence            11                              01122233110            1235678999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.++
T Consensus       160 ~~~~~~  165 (202)
T cd04120         160 DDILKK  165 (202)
T ss_pred             HHHHHh
Confidence            988764

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04121 Rab40 Rab40 subfamily

Probab=99.88  E-value=2.5e-22  Score=151.50  Aligned_cols=111  Identities=15%  Similarity=0.101  Sum_probs=91.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||++|+.+|..||++++++|+|||+          +++++|+.+..|+..+...  .+++|++|+|||+|+...+
T Consensus        59 iwDt~G~~~~~~l~~~~~~~ad~illVfD~----------t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~DL~~~~  126 (189)
T cd04121          59 LWDTSGQGRFCTIFRSYSRGAQGIILVYDI----------TNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLAFKR  126 (189)
T ss_pred             EEeCCCcHHHHHHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccchhcc
Confidence            699999999999999999999999999999          8999999999999998654  2579999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..             ...+.+++|||+++.||+++|+++.
T Consensus       127 ~v------------------------------~~~~~~~~a~-------------~~~~~~~e~SAk~g~~V~~~F~~l~  163 (189)
T cd04121         127 QV------------------------------ATEQAQAYAE-------------RNGMTFFEVSPLCNFNITESFTELA  163 (189)
T ss_pred             CC------------------------------CHHHHHHHHH-------------HcCCEEEEecCCCCCCHHHHHHHHH
Confidence            11                              1233444432             2336788999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.++.+
T Consensus       164 ~~i~~~  169 (189)
T cd04121         164 RIVLMR  169 (189)
T ss_pred             HHHHHh
Confidence            988754

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0091|consensus

Probab=99.88  E-value=2.3e-22  Score=144.96  Aligned_cols=116  Identities=15%  Similarity=0.127  Sum_probs=99.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC-CCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW-LRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~-~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|||+||++...||++.-+++.|||+          ++..+|+....|+++..-+-. ..++.++|||.|+||-..
T Consensus        62 lwdtagqerfrsitksyyrnsvgvllvydi----------tnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq  131 (213)
T KOG0091|consen   62 LWDTAGQERFRSITKSYYRNSVGVLLVYDI----------TNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ  131 (213)
T ss_pred             EeeccchHHHHHHHHHHhhcccceEEEEec----------cchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhh
Confidence            699999999999999999999999999999          899999999999988754433 456789999999999765


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      +..                              +.++|.+|             +..+.+.+.+|||+++.||+++|..+
T Consensus       132 RqV------------------------------t~EEaEkl-------------Aa~hgM~FVETSak~g~NVeEAF~ml  168 (213)
T KOG0091|consen  132 RQV------------------------------TAEEAEKL-------------AASHGMAFVETSAKNGCNVEEAFDML  168 (213)
T ss_pred             ccc------------------------------cHHHHHHH-------------HHhcCceEEEecccCCCcHHHHHHHH
Confidence            433                              36677777             34577999999999999999999999


Q ss_pred             HHHHHHhhhh
Q psy12099        160 RDIIQRMHLR  169 (174)
Q Consensus       160 ~~~i~~~~~~  169 (174)
                      ++.|...-.+
T Consensus       169 aqeIf~~i~q  178 (213)
T KOG0091|consen  169 AQEIFQAIQQ  178 (213)
T ss_pred             HHHHHHHHhc
Confidence            9999876443

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.88  E-value=3.3e-22  Score=149.68  Aligned_cols=116  Identities=27%  Similarity=0.423  Sum_probs=92.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||++||++++.+|.+||++++++|||+|+          ++..++.++..++..+++.....++|++|++||+|+..+.
T Consensus        65 i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~----------s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~  134 (181)
T PLN00223         65 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM  134 (181)
T ss_pred             EEECCCCHHHHHHHHHHhccCCEEEEEEeC----------CcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC
Confidence            699999999999999999999999999999          7888999999999998877666789999999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                       .  ...+.+.                                  ..+..   -..+.+++.+|||++|+||.++|+++.
T Consensus       135 -~--~~~~~~~----------------------------------l~l~~---~~~~~~~~~~~Sa~~g~gv~e~~~~l~  174 (181)
T PLN00223        135 -N--AAEITDK----------------------------------LGLHS---LRQRHWYIQSTCATSGEGLYEGLDWLS  174 (181)
T ss_pred             -C--HHHHHHH----------------------------------hCccc---cCCCceEEEeccCCCCCCHHHHHHHHH
Confidence             1  0111111                                  11111   123557788899999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.++
T Consensus       175 ~~~~~~  180 (181)
T PLN00223        175 NNIANK  180 (181)
T ss_pred             HHHhhc
Confidence            988765

>KOG0394|consensus

Probab=99.88  E-value=1.2e-22  Score=148.85  Aligned_cols=117  Identities=14%  Similarity=0.133  Sum_probs=96.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCC---CCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWL---RTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~---~~~~iilv~NK~Dl~   77 (174)
                      ||||||||||+++...+||++|++++|||+          ++..+|+..-.|-++++.....   ..-||||+|||.|+.
T Consensus        62 iWDTAGQERFqsLg~aFYRgaDcCvlvydv----------~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~  131 (210)
T KOG0394|consen   62 IWDTAGQERFQSLGVAFYRGADCCVLVYDV----------NNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVD  131 (210)
T ss_pred             EEecccHHHhhhcccceecCCceEEEEeec----------CChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence            799999999999999999999999999999          9999999999999998765432   346999999999997


Q ss_pred             hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099         78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN  157 (174)
Q Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~  157 (174)
                      ..+-.    .                        .+-+.|..|...            ++.+.+++||||+..||.++|+
T Consensus       132 ~~~~r----~------------------------VS~~~Aq~WC~s------------~gnipyfEtSAK~~~NV~~AFe  171 (210)
T KOG0394|consen  132 GGKSR----Q------------------------VSEKKAQTWCKS------------KGNIPYFETSAKEATNVDEAFE  171 (210)
T ss_pred             CCccc----e------------------------eeHHHHHHHHHh------------cCCceeEEecccccccHHHHHH
Confidence            63211    0                        023446666543            3568899999999999999999


Q ss_pred             HHHHHHHHhh
Q psy12099        158 DCRDIIQRMH  167 (174)
Q Consensus       158 ~~~~~i~~~~  167 (174)
                      .++...+...
T Consensus       172 ~ia~~aL~~E  181 (210)
T KOG0394|consen  172 EIARRALANE  181 (210)
T ss_pred             HHHHHHHhcc
Confidence            9999888654

>KOG0071|consensus

Probab=99.87  E-value=3.6e-22  Score=140.55  Aligned_cols=112  Identities=23%  Similarity=0.430  Sum_probs=97.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||+|||.+.|.+|.|||.+..++|||+|.          .+.++++++.+.+..+++++.+.+.|+++++||+|++.++
T Consensus        65 vwdvGGqd~iRplWrhYy~gtqglIFV~Ds----------a~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~  134 (180)
T KOG0071|consen   65 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDS----------ADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM  134 (180)
T ss_pred             eeeccCchhhhHHHHhhccCCceEEEEEec----------cchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc
Confidence            699999999999999999999999999999          6889999999999999999999999999999999999875


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      .+   ..+++                                  |.++.+   .+++.++++.+||.+|+++.+.|.++.
T Consensus       135 ~p---qei~d----------------------------------~leLe~---~r~~~W~vqp~~a~~gdgL~eglswls  174 (180)
T KOG0071|consen  135 KP---QEIQD----------------------------------KLELER---IRDRNWYVQPSCALSGDGLKEGLSWLS  174 (180)
T ss_pred             CH---HHHHH----------------------------------Hhcccc---ccCCccEeeccccccchhHHHHHHHHH
Confidence            33   22322                                  223333   567889999999999999999999987


Q ss_pred             HH
Q psy12099        161 DI  162 (174)
Q Consensus       161 ~~  162 (174)
                      +.
T Consensus       175 nn  176 (180)
T KOG0071|consen  175 NN  176 (180)
T ss_pred             hh
Confidence            54

>KOG0088|consensus

Probab=99.87  E-value=2.9e-22  Score=143.80  Aligned_cols=113  Identities=14%  Similarity=0.124  Sum_probs=94.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|||+|..+-+.||++.+++++|||+          +++.+|+..+.|..++... ....+.++|||||.||.+++
T Consensus        66 IWDTAGQErfHALGPIYYRgSnGalLVyDI----------TDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEeeR  134 (218)
T KOG0088|consen   66 IWDTAGQERFHALGPIYYRGSNGALLVYDI----------TDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEER  134 (218)
T ss_pred             eeeccchHhhhccCceEEeCCCceEEEEec----------cchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHhh
Confidence            799999999999999999999999999999          9999999999999997654 33467899999999998876


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      -.                              +.++|..|..             .-...+.+|||+++.+|.++|+.+.
T Consensus       135 ~V------------------------------t~qeAe~YAe-------------svGA~y~eTSAk~N~Gi~elFe~Lt  171 (218)
T KOG0088|consen  135 QV------------------------------TRQEAEAYAE-------------SVGALYMETSAKDNVGISELFESLT  171 (218)
T ss_pred             hh------------------------------hHHHHHHHHH-------------hhchhheecccccccCHHHHHHHHH
Confidence            43                              2345666632             2334567899999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      ..++...
T Consensus       172 ~~MiE~~  178 (218)
T KOG0088|consen  172 AKMIEHS  178 (218)
T ss_pred             HHHHHHh
Confidence            8887653

>KOG0079|consensus

Probab=99.87  E-value=3.2e-22  Score=142.03  Aligned_cols=114  Identities=20%  Similarity=0.195  Sum_probs=99.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||+||||+||.+...||++.+++|.|||+          ++.++|.....|++++.++..  ..|=+|||||.|.++.+
T Consensus        61 IwDtAGqErFrtitstyyrgthgv~vVYDV----------Tn~ESF~Nv~rWLeei~~ncd--sv~~vLVGNK~d~~~Rr  128 (198)
T KOG0079|consen   61 IWDTAGQERFRTITSTYYRGTHGVIVVYDV----------TNGESFNNVKRWLEEIRNNCD--SVPKVLVGNKNDDPERR  128 (198)
T ss_pred             EeecccHHHHHHHHHHHccCCceEEEEEEC----------cchhhhHhHHHHHHHHHhcCc--cccceecccCCCCccce
Confidence            799999999999999999999999999999          999999999999999877643  78999999999998876


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              +-++|..|.             ..-.+..++|||++.+|++.+|..|.
T Consensus       129 vV------------------------------~t~dAr~~A-------------~~mgie~FETSaKe~~NvE~mF~cit  165 (198)
T KOG0079|consen  129 VV------------------------------DTEDARAFA-------------LQMGIELFETSAKENENVEAMFHCIT  165 (198)
T ss_pred             ee------------------------------ehHHHHHHH-------------HhcCchheehhhhhcccchHHHHHHH
Confidence            55                              234566663             23457889999999999999999999


Q ss_pred             HHHHHhhhh
Q psy12099        161 DIIQRMHLR  169 (174)
Q Consensus       161 ~~i~~~~~~  169 (174)
                      +.+++..++
T Consensus       166 ~qvl~~k~r  174 (198)
T KOG0079|consen  166 KQVLQAKLR  174 (198)
T ss_pred             HHHHHHHHh
Confidence            999887654

>KOG0093|consensus

Probab=99.87  E-value=3.6e-22  Score=141.64  Aligned_cols=119  Identities=21%  Similarity=0.212  Sum_probs=96.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|||+||.+...|||++.++|++||+          ++.++|.....|.-.+.. ....+.|++|++||||+..++
T Consensus        74 iwDTagqEryrtiTTayyRgamgfiLmyDi----------tNeeSf~svqdw~tqIkt-ysw~naqvilvgnKCDmd~eR  142 (193)
T KOG0093|consen   74 IWDTAGQERYRTITTAYYRGAMGFILMYDI----------TNEESFNSVQDWITQIKT-YSWDNAQVILVGNKCDMDSER  142 (193)
T ss_pred             EEecccchhhhHHHHHHhhccceEEEEEec----------CCHHHHHHHHHHHHHhee-eeccCceEEEEecccCCccce
Confidence            799999999999999999999999999999          899999988888877644 455799999999999998887


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  .                            .+....++.             ...+.+++||||.+.||+++|+.+.
T Consensus       143 vi--s----------------------------~e~g~~l~~-------------~LGfefFEtSaK~NinVk~~Fe~lv  179 (193)
T KOG0093|consen  143 VI--S----------------------------HERGRQLAD-------------QLGFEFFETSAKENINVKQVFERLV  179 (193)
T ss_pred             ee--e----------------------------HHHHHHHHH-------------HhChHHhhhcccccccHHHHHHHHH
Confidence            54  1                            122233321             2335778999999999999999999


Q ss_pred             HHHHHhhhhhccC
Q psy12099        161 DIIQRMHLRQYEL  173 (174)
Q Consensus       161 ~~i~~~~~~~~~l  173 (174)
                      +.|-++.-.+..+
T Consensus       180 ~~Ic~kmsesl~~  192 (193)
T KOG0093|consen  180 DIICDKMSESLDL  192 (193)
T ss_pred             HHHHHHhhhhhcc
Confidence            9998776555443

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.86  E-value=1.5e-21  Score=145.23  Aligned_cols=113  Identities=23%  Similarity=0.419  Sum_probs=90.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||++++.+|.+||++++++|||+|+          +++.+++++.+++..+++.....++|++|++||+|+.+..
T Consensus        61 l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~----------t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~  130 (175)
T smart00177       61 VWDVGGQDKIRPLWRHYYTNTQGLIFVVDS----------NDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM  130 (175)
T ss_pred             EEECCCChhhHHHHHHHhCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC
Confidence            699999999999999999999999999999          7889999999999999876556789999999999986431


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                       .  ...+.+.+.                                  +..   ...+.++++.+||++|.||.++|++|.
T Consensus       131 -~--~~~i~~~~~----------------------------------~~~---~~~~~~~~~~~Sa~~g~gv~e~~~~l~  170 (175)
T smart00177      131 -K--AAEITEKLG----------------------------------LHS---IRDRNWYIQPTCATSGDGLYEGLTWLS  170 (175)
T ss_pred             -C--HHHHHHHhC----------------------------------ccc---cCCCcEEEEEeeCCCCCCHHHHHHHHH
Confidence             1  111111110                                  111   234567888999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       171 ~~~  173 (175)
T smart00177      171 NNL  173 (175)
T ss_pred             HHh
Confidence            765

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.85  E-value=5.9e-21  Score=142.19  Aligned_cols=114  Identities=25%  Similarity=0.369  Sum_probs=94.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||+|||+++|..|.+||++++++|||+|.          ++.+++.++.+.+..+++++...++|++|++||+|+.+..
T Consensus        62 ~~d~gG~~~~~~~w~~y~~~~~~iIfVvDs----------sd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~  131 (175)
T PF00025_consen   62 IWDLGGQESFRPLWKSYFQNADGIIFVVDS----------SDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM  131 (175)
T ss_dssp             EEEESSSGGGGGGGGGGHTTESEEEEEEET----------TGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS
T ss_pred             EEeccccccccccceeeccccceeEEEEec----------ccceeecccccchhhhcchhhcccceEEEEeccccccCcc
Confidence            699999999999999999999999999999          7889999999999999999888899999999999987532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..   ..+.+.+.-..                                    ....+.+.++.|||++|+++.++|+||.
T Consensus       132 ~~---~~i~~~l~l~~------------------------------------l~~~~~~~v~~~sa~~g~Gv~e~l~WL~  172 (175)
T PF00025_consen  132 SE---EEIKEYLGLEK------------------------------------LKNKRPWSVFSCSAKTGEGVDEGLEWLI  172 (175)
T ss_dssp             TH---HHHHHHTTGGG------------------------------------TTSSSCEEEEEEBTTTTBTHHHHHHHHH
T ss_pred             hh---hHHHhhhhhhh------------------------------------cccCCceEEEeeeccCCcCHHHHHHHHH
Confidence            11   12222221111                                    0225678999999999999999999999


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.|
T Consensus       173 ~~~  175 (175)
T PF00025_consen  173 EQI  175 (175)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            876

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01875 RhoG RhoG subfamily

Probab=99.85  E-value=3.2e-21  Score=145.37  Aligned_cols=124  Identities=11%  Similarity=0.189  Sum_probs=90.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+||++|+.+|..||++++++|+|||+          +++.+|+.+.. |...+.+.  ..++|++|+|||+||.+.
T Consensus        55 i~Dt~G~e~~~~l~~~~~~~a~~~ilvydi----------t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~  122 (191)
T cd01875          55 LWDTAGQEEYDRLRTLSYPQTNVFIICFSI----------ASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRND  122 (191)
T ss_pred             EEECCCchhhhhhhhhhccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcC
Confidence            699999999999999999999999999999          89999999874 66665443  357999999999999653


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...  ...+.+    ...            ..-..+++.++...            ...+.+++|||+++.||+++|.++
T Consensus       123 ~~~--~~~~~~----~~~------------~~v~~~~~~~~a~~------------~~~~~~~e~SAk~g~~v~e~f~~l  172 (191)
T cd01875         123 ADT--LKKLKE----QGQ------------APITPQQGGALAKQ------------IHAVKYLECSALNQDGVKEVFAEA  172 (191)
T ss_pred             hhh--HHHHhh----ccC------------CCCCHHHHHHHHHH------------cCCcEEEEeCCCCCCCHHHHHHHH
Confidence            211  011111    000            00123345554211            122578899999999999999999


Q ss_pred             HHHHHHh
Q psy12099        160 RDIIQRM  166 (174)
Q Consensus       160 ~~~i~~~  166 (174)
                      .+.++..
T Consensus       173 ~~~~~~~  179 (191)
T cd01875         173 VRAVLNP  179 (191)
T ss_pred             HHHHhcc
Confidence            9988764

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04149 Arf6 Arf6 subfamily

Probab=99.85  E-value=3e-21  Score=142.71  Aligned_cols=111  Identities=23%  Similarity=0.423  Sum_probs=87.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..||++++++|||+|+          ++..++.+...++.++++.....++|++|++||+|+.+..
T Consensus        57 l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~----------t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~  126 (168)
T cd04149          57 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDS----------ADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM  126 (168)
T ss_pred             EEECCCCHHHHHHHHHHhccCCEEEEEEeC----------CchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC
Confidence            699999999999999999999999999999          7888999999999999877656789999999999986421


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                       .  ...+.+++                                  .+.+   ...+.+.+++|||++|.||.++|++|.
T Consensus       127 -~--~~~i~~~~----------------------------------~~~~---~~~~~~~~~~~SAk~g~gv~~~~~~l~  166 (168)
T cd04149         127 -K--PHEIQEKL----------------------------------GLTR---IRDRNWYVQPSCATSGDGLYEGLTWLS  166 (168)
T ss_pred             -C--HHHHHHHc----------------------------------CCCc---cCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence             1  11111111                                  1111   123446788999999999999999986


Q ss_pred             H
Q psy12099        161 D  161 (174)
Q Consensus       161 ~  161 (174)
                      +
T Consensus       167 ~  167 (168)
T cd04149         167 S  167 (168)
T ss_pred             c
Confidence            4

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04133 Rop_like Rop subfamily

Probab=99.85  E-value=2.7e-21  Score=144.25  Aligned_cols=119  Identities=11%  Similarity=0.144  Sum_probs=89.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+||++|++++..||++++++|+|||+          +++++|+.+ ..|+..+.+..  .++|++|||||+|+.++
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~----------~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~  120 (176)
T cd04133          53 LWDTAGQEDYNRLRPLSYRGADVFVLAFSL----------ISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDD  120 (176)
T ss_pred             EEECCCCccccccchhhcCCCcEEEEEEEc----------CCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccC
Confidence            699999999999999999999999999999          899999998 57888875543  47999999999999654


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcce-eeeecccccchhHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYC-YPHFTCAVDTENIRRVFND  158 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~-~~~~tsA~d~~~i~~~f~~  158 (174)
                      +..    ...    +..            ...-..+++.++..             .... .+++|||+++.||+++|+.
T Consensus       121 ~~~----~~~----~~~------------~~~v~~~~~~~~a~-------------~~~~~~~~E~SAk~~~nV~~~F~~  167 (176)
T cd04133         121 KQY----LAD----HPG------------ASPITTAQGEELRK-------------QIGAAAYIECSSKTQQNVKAVFDA  167 (176)
T ss_pred             hhh----hhh----ccC------------CCCCCHHHHHHHHH-------------HcCCCEEEECCCCcccCHHHHHHH
Confidence            311    000    000            00112344555532             1223 4779999999999999999


Q ss_pred             HHHHHH
Q psy12099        159 CRDIIQ  164 (174)
Q Consensus       159 ~~~~i~  164 (174)
                      +.+.++
T Consensus       168 ~~~~~~  173 (176)
T cd04133         168 AIKVVL  173 (176)
T ss_pred             HHHHHh
Confidence            998764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>PTZ00099 rab6; Provisional

Probab=99.85  E-value=3.9e-21  Score=143.43  Aligned_cols=111  Identities=20%  Similarity=0.190  Sum_probs=87.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||++++.+|..||++++++|+|||+          ++..+|+....|+..+.+.. ..++|++|||||+|+...+
T Consensus        33 iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~----------t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~~~~  101 (176)
T PTZ00099         33 LWDTAGQERFRSLIPSYIRDSAAAIVVYDI----------TNRQSFENTTKWIQDILNER-GKDVIIALVGNKTDLGDLR  101 (176)
T ss_pred             EEECCChHHhhhccHHHhCCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECccccccc
Confidence            699999999999999999999999999999          89999999999999987653 3578999999999996432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..             .....+++|||+++.||.++|+++.
T Consensus       102 ~v------------------------------~~~e~~~~~~-------------~~~~~~~e~SAk~g~nV~~lf~~l~  138 (176)
T PTZ00099        102 KV------------------------------TYEEGMQKAQ-------------EYNTMFHETSAKAGHNIKVLFKKIA  138 (176)
T ss_pred             CC------------------------------CHHHHHHHHH-------------HcCCEEEEEECCCCCCHHHHHHHHH
Confidence            11                              0122322211             1224567899999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.+..
T Consensus       139 ~~l~~  143 (176)
T PTZ00099        139 AKLPN  143 (176)
T ss_pred             HHHHh
Confidence            88754

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.85  E-value=6.1e-21  Score=141.57  Aligned_cols=113  Identities=20%  Similarity=0.201  Sum_probs=89.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++++.+|..||++++++|+|||+          ++..++..+..|+..+.+.....++|++|++||+|+...+
T Consensus        54 i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~----------~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~  123 (172)
T cd04141          54 ILDTAGQAEFTAMRDQYMRCGEGFIICYSV----------TDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQR  123 (172)
T ss_pred             EEeCCCchhhHHHhHHHhhcCCEEEEEEEC----------CchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcC
Confidence            699999999999999999999999999999          8999999998877766543334579999999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              +.+++.++..             ...+.+++|||+++.||+++|+++.
T Consensus       124 ~v------------------------------~~~~~~~~a~-------------~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141         124 QV------------------------------TTEEGRNLAR-------------EFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             cc------------------------------CHHHHHHHHH-------------HhCCEEEEEecCCCCCHHHHHHHHH
Confidence            11                              1122333321             1236788999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.++
T Consensus       161 ~~~~~~  166 (172)
T cd04141         161 REIRRK  166 (172)
T ss_pred             HHHHHh
Confidence            888764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.85  E-value=5.8e-21  Score=145.22  Aligned_cols=109  Identities=16%  Similarity=0.077  Sum_probs=88.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||++|+.+|..||++++++|+|||+          ++..++..+..|...+.+..  .++|++|||||+|+....
T Consensus        48 iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~----------t~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~  115 (200)
T smart00176       48 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDV----------TARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRK  115 (200)
T ss_pred             EEECCCchhhhhhhHHHhcCCCEEEEEEEC----------CChHHHHHHHHHHHHHHHhC--CCCCEEEEEECccccccc
Confidence            699999999999999999999999999999          89999999999988887643  579999999999985321


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      +.                               .+ ..++.             ....+.+++|||+++.||+++|.++.
T Consensus       116 v~-------------------------------~~-~~~~~-------------~~~~~~~~e~SAk~~~~v~~~F~~l~  150 (200)
T smart00176      116 VK-------------------------------AK-SITFH-------------RKKNLQYYDISAKSNYNFEKPFLWLA  150 (200)
T ss_pred             CC-------------------------------HH-HHHHH-------------HHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11                               00 11111             12346788999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.++..
T Consensus       151 ~~i~~~  156 (200)
T smart00176      151 RKLIGD  156 (200)
T ss_pred             HHHHhc
Confidence            988754

Ran is involved in the active transport of proteins through nuclear pores.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.85  E-value=6.2e-21  Score=139.69  Aligned_cols=111  Identities=24%  Similarity=0.439  Sum_probs=87.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||++++.+|.+||++++++|||+|+          ++..++.++.+++..++......++|++|++||+|+....
T Consensus        48 l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~  117 (159)
T cd04150          48 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM  117 (159)
T ss_pred             EEECCCCHhHHHHHHHHhcCCCEEEEEEeC----------CCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC
Confidence            699999999999999999999999999999          7888999999999998876656679999999999985421


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                       .  ...+..                                 ++ .++.   ...+.++++++||++|.||+++|+++.
T Consensus       118 -~--~~~i~~---------------------------------~~-~~~~---~~~~~~~~~~~Sak~g~gv~~~~~~l~  157 (159)
T cd04150         118 -S--AAEVTD---------------------------------KL-GLHS---LRNRNWYIQATCATSGDGLYEGLDWLS  157 (159)
T ss_pred             -C--HHHHHH---------------------------------Hh-Cccc---cCCCCEEEEEeeCCCCCCHHHHHHHHh
Confidence             1  001110                                 00 0111   223557788999999999999999986


Q ss_pred             H
Q psy12099        161 D  161 (174)
Q Consensus       161 ~  161 (174)
                      +
T Consensus       158 ~  158 (159)
T cd04150         158 N  158 (159)
T ss_pred             c
Confidence            4

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.84  E-value=6.5e-21  Score=142.94  Aligned_cols=122  Identities=14%  Similarity=0.082  Sum_probs=89.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+||++|+.+++.||++++++|+|||+          +++.+|+.. ..|+..+.+..  +++|++|||||+||...
T Consensus        57 iwDtaG~e~~~~~~~~~~~~ad~~ilvyDi----------t~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~  124 (182)
T cd04172          57 LWDTSGSPYYDNVRPLSYPDSDAVLICFDI----------SRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTD  124 (182)
T ss_pred             EEECCCchhhHhhhhhhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcC
Confidence            699999999999999999999999999999          899999997 57777765542  57899999999998542


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcc-eeeeecccccchh-HHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHY-CYPHFTCAVDTEN-IRRVFN  157 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~-~~~~~tsA~d~~~-i~~~f~  157 (174)
                      .-.     +.+......   .          .-..+++.++..             ... +.+++|||+++.| |+++|.
T Consensus       125 ~~~-----~~~~~~~~~---~----------~v~~~~~~~~a~-------------~~~~~~~~E~SAk~~~n~v~~~F~  173 (182)
T cd04172         125 LTT-----LVELSNHRQ---T----------PVSYDQGANMAK-------------QIGAATYIECSALQSENSVRDIFH  173 (182)
T ss_pred             hhh-----HHHHHhcCC---C----------CCCHHHHHHHHH-------------HcCCCEEEECCcCCCCCCHHHHHH
Confidence            110     000000000   0          012445666532             233 4688999999999 999999


Q ss_pred             HHHHHHHH
Q psy12099        158 DCRDIIQR  165 (174)
Q Consensus       158 ~~~~~i~~  165 (174)
                      .+...+++
T Consensus       174 ~~~~~~~~  181 (182)
T cd04172         174 VATLACVN  181 (182)
T ss_pred             HHHHHHhc
Confidence            99887654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.84  E-value=1.2e-20  Score=141.19  Aligned_cols=116  Identities=21%  Similarity=0.393  Sum_probs=91.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||++++.+|.+||++++++|||+|+          ++.+++.++..++..++......++|++|++||+|+.+..
T Consensus        65 l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~----------t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~  134 (182)
T PTZ00133         65 MWDVGGQDKLRPLWRHYYQNTNGLIFVVDS----------NDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM  134 (182)
T ss_pred             EEECCCCHhHHHHHHHHhcCCCEEEEEEeC----------CCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC
Confidence            699999999999999999999999999999          7889999999999998876556679999999999986421


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                       .  ...+...   .                               .+..   ...+.+++.+|||++|.||+++|+++.
T Consensus       135 -~--~~~i~~~---l-------------------------------~~~~---~~~~~~~~~~~Sa~tg~gv~e~~~~l~  174 (182)
T PTZ00133        135 -S--TTEVTEK---L-------------------------------GLHS---VRQRNWYIQGCCATTAQGLYEGLDWLS  174 (182)
T ss_pred             -C--HHHHHHH---h-------------------------------CCCc---ccCCcEEEEeeeCCCCCCHHHHHHHHH
Confidence             1  0111110   0                               0111   223557788999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.++
T Consensus       175 ~~i~~~  180 (182)
T PTZ00133        175 ANIKKS  180 (182)
T ss_pred             HHHHHh
Confidence            888754

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.84  E-value=1e-20  Score=146.80  Aligned_cols=126  Identities=12%  Similarity=0.105  Sum_probs=92.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+||++|+.+++.||++++++|+|||+          ++.++|+.. ..|+..+....  ++.|++|||||+||..+
T Consensus        65 iwDTaG~e~~~~~~~~~~~~ad~vIlVyDi----------t~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~  132 (232)
T cd04174          65 LWDTSGSPYYDNVRPLCYSDSDAVLLCFDI----------SRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTD  132 (232)
T ss_pred             EEeCCCchhhHHHHHHHcCCCcEEEEEEEC----------CChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccc
Confidence            699999999999999999999999999999          899999985 67777775432  47899999999998542


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcce-eeeecccccch-hHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYC-YPHFTCAVDTE-NIRRVFN  157 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~-~~~~tsA~d~~-~i~~~f~  157 (174)
                      .-     .+.+......             ..-..+++.+|..             ...+ .+++|||+++. ||+++|.
T Consensus       133 ~~-----~~~~l~~~~~-------------~~Vs~~e~~~~a~-------------~~~~~~~~EtSAktg~~~V~e~F~  181 (232)
T cd04174         133 LS-----TLMELSNQKQ-------------APISYEQGCALAK-------------QLGAEVYLECSAFTSEKSIHSIFR  181 (232)
T ss_pred             cc-----hhhhhccccC-------------CcCCHHHHHHHHH-------------HcCCCEEEEccCCcCCcCHHHHHH
Confidence            11     1110000000             0012455666632             2334 57899999997 8999999


Q ss_pred             HHHHHHHHhhhh
Q psy12099        158 DCRDIIQRMHLR  169 (174)
Q Consensus       158 ~~~~~i~~~~~~  169 (174)
                      .+...++++.+.
T Consensus       182 ~~~~~~~~~~~~  193 (232)
T cd04174         182 SASLLCLNKLSP  193 (232)
T ss_pred             HHHHHHHHhccc
Confidence            999999876544

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0081|consensus

Probab=99.84  E-value=8.4e-21  Score=136.39  Aligned_cols=113  Identities=16%  Similarity=0.191  Sum_probs=95.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|||+||++...||++|-+.+++||+          ++..+|.+...|+.++--+.--+++-|+|+|||+||...+
T Consensus        71 lWDTAGQERFRSLTTAFfRDAMGFlLiFDl----------T~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R  140 (219)
T KOG0081|consen   71 LWDTAGQERFRSLTTAFFRDAMGFLLIFDL----------TSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQR  140 (219)
T ss_pred             eeccccHHHHHHHHHHHHHhhccceEEEec----------cchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhh
Confidence            699999999999999999999999999999          8999999999999998777666788999999999999877


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..+                              -++|...             +.+..+.+++|||-+|.||++..+.+.
T Consensus       141 ~Vs------------------------------~~qa~~L-------------a~kyglPYfETSA~tg~Nv~kave~Ll  177 (219)
T KOG0081|consen  141 VVS------------------------------EDQAAAL-------------ADKYGLPYFETSACTGTNVEKAVELLL  177 (219)
T ss_pred             hhh------------------------------HHHHHHH-------------HHHhCCCeeeeccccCcCHHHHHHHHH
Confidence            551                              1122222             122347888999999999999999988


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.|.++
T Consensus       178 dlvM~R  183 (219)
T KOG0081|consen  178 DLVMKR  183 (219)
T ss_pred             HHHHHH
Confidence            888765

>cd04127 Rab27A Rab27a subfamily

Probab=99.83  E-value=2.6e-20  Score=138.30  Aligned_cols=113  Identities=16%  Similarity=0.187  Sum_probs=90.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||++++.+|..|+++++++|+|||+          ++..++.....|+..+.......+.|++|++||+|+..++
T Consensus        67 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~  136 (180)
T cd04127          67 LWDTAGQERFRSLTTAFFRDAMGFLLIFDL----------TNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQR  136 (180)
T ss_pred             EEeCCChHHHHHHHHHHhCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcC
Confidence            699999999999999999999999999999          8899999999999988765445678999999999996542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..             ...+.++++||+++.|++++|+.+.
T Consensus       137 ~v------------------------------~~~~~~~~~~-------------~~~~~~~e~Sak~~~~v~~l~~~l~  173 (180)
T cd04127         137 QV------------------------------SEEQAKALAD-------------KYGIPYFETSAATGTNVEKAVERLL  173 (180)
T ss_pred             cc------------------------------CHHHHHHHHH-------------HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            11                              0122333321             1225678999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.++++
T Consensus       174 ~~~~~~  179 (180)
T cd04127         174 DLVMKR  179 (180)
T ss_pred             HHHHhh
Confidence            988754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04158 ARD1 ARD1 subfamily

Probab=99.83  E-value=3e-20  Score=137.22  Aligned_cols=116  Identities=17%  Similarity=0.297  Sum_probs=90.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|.+|+++++++|||+|+          ++.+++.++..|+..+++.....+.|++|++||+|+... 
T Consensus        47 l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~----------s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-  115 (169)
T cd04158          47 IWDVGGKHKLRPLWKHYYLNTQAVVFVVDS----------SHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA-  115 (169)
T ss_pred             EEECCCChhcchHHHHHhccCCEEEEEEeC----------CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC-
Confidence            699999999999999999999999999999          788999999999999987755667899999999998642 


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  ...+.++.....                               .     ...+.+.+.+|||++|.||+++|+++.
T Consensus       116 ~~--~~~~~~~~~~~~-------------------------------~-----~~~~~~~~~~~Sa~~g~gv~~~f~~l~  157 (169)
T cd04158         116 LS--VEEMTELLSLHK-------------------------------L-----CCGRSWYIQGCDARSGMGLYEGLDWLS  157 (169)
T ss_pred             CC--HHHHHHHhCCcc-------------------------------c-----cCCCcEEEEeCcCCCCCCHHHHHHHHH
Confidence            11  112222211000                               0     112356788999999999999999998


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.+..
T Consensus       158 ~~~~~  162 (169)
T cd04158         158 RQLVA  162 (169)
T ss_pred             HHHhh
Confidence            87654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>KOG0095|consensus

Probab=99.83  E-value=1e-20  Score=134.76  Aligned_cols=113  Identities=20%  Similarity=0.211  Sum_probs=90.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|||+||++...||++++++|+|+|+          +-..+|+-.-+|+.++-+. ...++--+|||||.|+-+++
T Consensus        60 iwdtagqerfrsitqsyyrsahalilvydi----------scqpsfdclpewlreie~y-an~kvlkilvgnk~d~~drr  128 (213)
T KOG0095|consen   60 IWDTAGQERFRSITQSYYRSAHALILVYDI----------SCQPSFDCLPEWLREIEQY-ANNKVLKILVGNKIDLADRR  128 (213)
T ss_pred             EeeccchHHHHHHHHHHhhhcceEEEEEec----------ccCcchhhhHHHHHHHHHH-hhcceEEEeeccccchhhhh
Confidence            799999999999999999999999999999          7788999999999997544 34567779999999998765


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  +.++.                                 ..|..        .+.+|+.+|||++.+||+.+|.+++
T Consensus       129 ev--p~qig---------------------------------eefs~--------~qdmyfletsakea~nve~lf~~~a  165 (213)
T KOG0095|consen  129 EV--PQQIG---------------------------------EEFSE--------AQDMYFLETSAKEADNVEKLFLDLA  165 (213)
T ss_pred             hh--hHHHH---------------------------------HHHHH--------hhhhhhhhhcccchhhHHHHHHHHH
Confidence            33  22221                                 12211        1236778999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      -.++...
T Consensus       166 ~rli~~a  172 (213)
T KOG0095|consen  166 CRLISEA  172 (213)
T ss_pred             HHHHHHH
Confidence            8887653

>cd04122 Rab14 Rab14 subfamily

Probab=99.83  E-value=3.2e-20  Score=136.34  Aligned_cols=111  Identities=18%  Similarity=0.146  Sum_probs=89.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++++.+|..|+++++++|+|||+          +++.+++....|+..+.... .++.|++|++||+|+..++
T Consensus        55 i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~  123 (166)
T cd04122          55 IWDTAGQERFRAVTRSYYRGAAGALMVYDI----------TRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQR  123 (166)
T ss_pred             EEECCCcHHHHHHHHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccc
Confidence            699999999999999999999999999999          89999999999998875542 3568999999999996543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..             ...+.++++||+++.||.++|.++.
T Consensus       124 ~~------------------------------~~~~~~~~~~-------------~~~~~~~e~Sa~~~~~i~e~f~~l~  160 (166)
T cd04122         124 DV------------------------------TYEEAKQFAD-------------ENGLLFLECSAKTGENVEDAFLETA  160 (166)
T ss_pred             Cc------------------------------CHHHHHHHHH-------------HcCCEEEEEECCCCCCHHHHHHHHH
Confidence            11                              1222333321             1235788999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      ..+++
T Consensus       161 ~~~~~  165 (166)
T cd04122         161 KKIYQ  165 (166)
T ss_pred             HHHhh
Confidence            88764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04126 Rab20 Rab20 subfamily

Probab=99.83  E-value=3.8e-20  Score=142.64  Aligned_cols=143  Identities=16%  Similarity=0.087  Sum_probs=96.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||++++.+|..||++++++|+|||+          ++..+|.++..||..+.+. ...++|++|||||+|+.+..
T Consensus        48 iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dv----------t~~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~  116 (220)
T cd04126          48 IWDTAGREQFHGLGSMYCRGAAAVILTYDV----------SNVQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEG  116 (220)
T ss_pred             EEeCCCcccchhhHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccccccc
Confidence            699999999999999999999999999999          8999999999999988754 34578999999999997532


Q ss_pred             Hhccccch-hhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHh--hhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099         81 VKAGKSRL-EDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRI--STASGDGKHYCYPHFTCAVDTENIRRVFN  157 (174)
Q Consensus        81 ~~~~~~~l-~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~--~~~~~~~~~~~~~~~tsA~d~~~i~~~f~  157 (174)
                      ...+...- ....++..            ...-..+++..+..+. ...  .+........+.+++|||++|.||+++|.
T Consensus       117 ~~~~~~~~~~~~~~~~~------------~r~v~~~e~~~~a~~~-~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~  183 (220)
T cd04126         117 ALAGQEKDAGDRVSPED------------QRQVTLEDAKAFYKRI-NKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFE  183 (220)
T ss_pred             ccccccccccccccccc------------cccCCHHHHHHHHHHh-CccccccccccccccceEEEeeCCCCCCHHHHHH
Confidence            21000000 00000000            0011345666664321 000  00000111235688999999999999999


Q ss_pred             HHHHHHHHhh
Q psy12099        158 DCRDIIQRMH  167 (174)
Q Consensus       158 ~~~~~i~~~~  167 (174)
                      .+.+.++...
T Consensus       184 ~i~~~~~~~~  193 (220)
T cd04126         184 YLFNLVLPLI  193 (220)
T ss_pred             HHHHHHHHHH
Confidence            9998887543

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0083|consensus

Probab=99.82  E-value=7.5e-21  Score=133.12  Aligned_cols=113  Identities=17%  Similarity=0.199  Sum_probs=91.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|||+||+....||+++++.++++|+          .+..+|+....|+.++... .-..+.++|+|||+|+..++
T Consensus        51 iwdtagqerfrsvt~ayyrda~allllydi----------ankasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~er  119 (192)
T KOG0083|consen   51 IWDTAGQERFRSVTHAYYRDADALLLLYDI----------ANKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHER  119 (192)
T ss_pred             EeeccchHHHhhhhHhhhcccceeeeeeec----------ccchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchhh
Confidence            799999999999999999999999999999          8999999999999998654 23468899999999997655


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ... ..+-+..                         |..|                 .+.+.+|||++|-||+..|..++
T Consensus       120 ~v~-~ddg~kl-------------------------a~~y-----------------~ipfmetsaktg~nvd~af~~ia  156 (192)
T KOG0083|consen  120 AVK-RDDGEKL-------------------------AEAY-----------------GIPFMETSAKTGFNVDLAFLAIA  156 (192)
T ss_pred             ccc-cchHHHH-------------------------HHHH-----------------CCCceeccccccccHhHHHHHHH
Confidence            431 1121111                         2222                 36788999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.+.+..
T Consensus       157 ~~l~k~~  163 (192)
T KOG0083|consen  157 EELKKLK  163 (192)
T ss_pred             HHHHHhc
Confidence            9987653

>KOG0097|consensus

Probab=99.82  E-value=3.5e-20  Score=131.01  Aligned_cols=112  Identities=16%  Similarity=0.121  Sum_probs=96.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|||+||.....||+++.+.+.|+|+          +.+.+......|+.... +-..++..|+|+|||.||..++
T Consensus        64 iwdtagqerfravtrsyyrgaagalmvydi----------trrstynhlsswl~dar-~ltnpnt~i~lignkadle~qr  132 (215)
T KOG0097|consen   64 IWDTAGQERFRAVTRSYYRGAAGALMVYDI----------TRRSTYNHLSSWLTDAR-NLTNPNTVIFLIGNKADLESQR  132 (215)
T ss_pred             EeecccHHHHHHHHHHHhccccceeEEEEe----------hhhhhhhhHHHHHhhhh-ccCCCceEEEEecchhhhhhcc
Confidence            799999999999999999999999999999          88888888888888864 3455788999999999997654


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      -.                              .+++|+.|             +....+.+.++||++|+||++.|-+.+
T Consensus       133 dv------------------------------~yeeak~f-------------aeengl~fle~saktg~nvedafle~a  169 (215)
T KOG0097|consen  133 DV------------------------------TYEEAKEF-------------AEENGLMFLEASAKTGQNVEDAFLETA  169 (215)
T ss_pred             cC------------------------------cHHHHHHH-------------HhhcCeEEEEecccccCcHHHHHHHHH
Confidence            22                              47888888             345668889999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.|.++
T Consensus       170 kkiyqn  175 (215)
T KOG0097|consen  170 KKIYQN  175 (215)
T ss_pred             HHHHHh
Confidence            998865

>cd04131 Rnd Rnd subfamily

Probab=99.82  E-value=3.7e-20  Score=138.32  Aligned_cols=121  Identities=14%  Similarity=0.105  Sum_probs=87.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+||++|+.+++.||++++++|+|||+          +++++|+.+ ..|+..+.+..  +++|++|||||+||..+
T Consensus        53 iwDt~G~~~~~~~~~~~~~~a~~~ilvfdi----------t~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~  120 (178)
T cd04131          53 LWDTSGSPYYDNVRPLCYPDSDAVLICFDI----------SRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTD  120 (178)
T ss_pred             EEECCCchhhhhcchhhcCCCCEEEEEEEC----------CChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcC
Confidence            699999999999999999999999999999          899999996 57777765542  57899999999999642


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcce-eeeecccccchh-HHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYC-YPHFTCAVDTEN-IRRVFN  157 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~-~~~~tsA~d~~~-i~~~f~  157 (174)
                      .-.     +... .....  .          .-..+++.+|..             .... .+++|||++++| |+++|.
T Consensus       121 ~~~-----~~~~-~~~~~--~----------~v~~~e~~~~a~-------------~~~~~~~~E~SA~~~~~~v~~~F~  169 (178)
T cd04131         121 LST-----LMEL-SHQRQ--A----------PVSYEQGCAIAK-------------QLGAEIYLECSAFTSEKSVRDIFH  169 (178)
T ss_pred             hhH-----HHHH-HhcCC--C----------CCCHHHHHHHHH-------------HhCCCEEEECccCcCCcCHHHHHH
Confidence            110     0000 00000  0          012445666632             2233 578999999996 999999


Q ss_pred             HHHHHHH
Q psy12099        158 DCRDIIQ  164 (174)
Q Consensus       158 ~~~~~i~  164 (174)
                      .+.+..+
T Consensus       170 ~~~~~~~  176 (178)
T cd04131         170 VATMACL  176 (178)
T ss_pred             HHHHHHh
Confidence            9988655

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04175 Rap1 Rap1 subgroup

Probab=99.82  E-value=4.7e-20  Score=134.97  Aligned_cols=111  Identities=20%  Similarity=0.187  Sum_probs=88.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||++++.+|..|+++++++|+|+|+          ++..++++...|+..+.+.....+.|++|++||+|+..++
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  122 (164)
T cd04175          53 ILDTAGTEQFTAMRDLYMKNGQGFVLVYSI----------TAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER  122 (164)
T ss_pred             EEECCCcccchhHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhcc
Confidence            699999999999999999999999999999          8899999999999998876555789999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.+..+. +            ...+.+.++||+++.|++++|.++.
T Consensus       123 ~~------------------------------~~~~~~~~~-~------------~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175         123 VV------------------------------GKEQGQNLA-R------------QWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EE------------------------------cHHHHHHHH-H------------HhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            11                              011122221 1            1125678999999999999999998


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.+-
T Consensus       160 ~~l~  163 (164)
T cd04175         160 RQIN  163 (164)
T ss_pred             HHhh
Confidence            7653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.82  E-value=7.6e-20  Score=138.74  Aligned_cols=114  Identities=17%  Similarity=0.094  Sum_probs=88.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC---CCCCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN---RWLRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~---~~~~~~~iilv~NK~Dl~   77 (174)
                      +|||+||++++.+|..||++++++|+|||+          +++++++.+..|+..+...   +...++|++||+||+|+.
T Consensus        54 l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~----------t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~  123 (201)
T cd04107          54 LWDIAGQERFGGMTRVYYRGAVGAIIVFDV----------TRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK  123 (201)
T ss_pred             EEECCCchhhhhhHHHHhCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence            699999999999999999999999999999          8999999998888776532   223578999999999996


Q ss_pred             hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099         78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN  157 (174)
Q Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~  157 (174)
                      .....                              ..+++.++...            .....+++|||+++.||+++|+
T Consensus       124 ~~~~~------------------------------~~~~~~~~~~~------------~~~~~~~e~Sak~~~~v~e~f~  161 (201)
T cd04107         124 KRLAK------------------------------DGEQMDQFCKE------------NGFIGWFETSAKEGINIEEAMR  161 (201)
T ss_pred             ccccc------------------------------CHHHHHHHHHH------------cCCceEEEEeCCCCCCHHHHHH
Confidence            42211                              11223333211            1114678999999999999999


Q ss_pred             HHHHHHHHh
Q psy12099        158 DCRDIIQRM  166 (174)
Q Consensus       158 ~~~~~i~~~  166 (174)
                      ++.+.+++.
T Consensus       162 ~l~~~l~~~  170 (201)
T cd04107         162 FLVKNILAN  170 (201)
T ss_pred             HHHHHHHHh
Confidence            999988764

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0073|consensus

Probab=99.82  E-value=1.4e-19  Score=130.46  Aligned_cols=115  Identities=22%  Similarity=0.285  Sum_probs=95.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||+|||...|+.|++||..++|+|+|+|.          +++.||++....+.+++.......+|++|++||+|+..+-
T Consensus        64 iwDvGGq~~lr~~W~nYfestdglIwvvDs----------sD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l  133 (185)
T KOG0073|consen   64 IWDVGGQKTLRSYWKNYFESTDGLIWVVDS----------SDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGAL  133 (185)
T ss_pred             EEEcCCcchhHHHHHHhhhccCeEEEEEEC----------chHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcccc
Confidence            699999999999999999999999999999          7999999999999999988888889999999999997432


Q ss_pred             Hhcc---ccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099         81 VKAG---KSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN  157 (174)
Q Consensus        81 ~~~~---~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~  157 (174)
                      -...   ...+++.                                          ++.+.+...-+||.+|+++.+.|+
T Consensus       134 ~~~~i~~~~~L~~l------------------------------------------~ks~~~~l~~cs~~tge~l~~gid  171 (185)
T KOG0073|consen  134 SLEEISKALDLEEL------------------------------------------AKSHHWRLVKCSAVTGEDLLEGID  171 (185)
T ss_pred             CHHHHHHhhCHHHh------------------------------------------ccccCceEEEEeccccccHHHHHH
Confidence            1100   0111111                                          234557788899999999999999


Q ss_pred             HHHHHHHHhh
Q psy12099        158 DCRDIIQRMH  167 (174)
Q Consensus       158 ~~~~~i~~~~  167 (174)
                      |+.+.+..+.
T Consensus       172 WL~~~l~~r~  181 (185)
T KOG0073|consen  172 WLCDDLMSRL  181 (185)
T ss_pred             HHHHHHHHHh
Confidence            9999988743

>cd04136 Rap_like Rap-like subfamily

Probab=99.82  E-value=6.1e-20  Score=133.74  Aligned_cols=110  Identities=21%  Similarity=0.204  Sum_probs=86.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||++++.+|..|+++++++|+|||+          ++..+++....|+..+.+.....+.|++|++||+|+..++
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  122 (163)
T cd04136          53 ILDTAGTEQFTAMRDLYIKNGQGFVLVYSI----------TSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDER  122 (163)
T ss_pred             EEECCCccccchHHHHHhhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence            699999999999999999999999999999          8899999999999888765445678999999999986432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.+..+..             .....++++||+++.||.++|+++.
T Consensus       123 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136         123 VV------------------------------SREEGQALAR-------------QWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             ee------------------------------cHHHHHHHHH-------------HcCCeEEEecCCCCCCHHHHHHHHH
Confidence            11                              0111222211             1125678999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            765

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.81  E-value=1.1e-19  Score=139.95  Aligned_cols=109  Identities=16%  Similarity=0.100  Sum_probs=87.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||++|+.+|..||++++++|+|||+          ++..++.....|+..+...  ..++|++|||||+|+....
T Consensus        66 i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~----------~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~  133 (219)
T PLN03071         66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDV----------TARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQ  133 (219)
T ss_pred             EEECCCchhhhhhhHHHcccccEEEEEEeC----------CCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhcc
Confidence            699999999999999999999999999999          8999999999999888654  3579999999999985422


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                               .+.+ .+..             .+.+.+++|||+++.||.++|.++.
T Consensus       134 v~-------------------------------~~~~-~~~~-------------~~~~~~~e~SAk~~~~i~~~f~~l~  168 (219)
T PLN03071        134 VK-------------------------------AKQV-TFHR-------------KKNLQYYEISAKSNYNFEKPFLYLA  168 (219)
T ss_pred             CC-------------------------------HHHH-HHHH-------------hcCCEEEEcCCCCCCCHHHHHHHHH
Confidence            11                               0111 1210             1335678999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+++.
T Consensus       169 ~~~~~~  174 (219)
T PLN03071        169 RKLAGD  174 (219)
T ss_pred             HHHHcC
Confidence            888643

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.80  E-value=1.5e-19  Score=134.56  Aligned_cols=120  Identities=13%  Similarity=0.155  Sum_probs=86.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+||++++.+|..||++++++|+|||+          +++++++.... |+..+...  ..++|++|+|||+|+...
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~----------~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~  120 (175)
T cd01874          53 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSV----------VSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDD  120 (175)
T ss_pred             EEECCCccchhhhhhhhcccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhC
Confidence            699999999999999999999999999999          89999999875 66665443  247899999999998653


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...  ...+    .....  .          .-..+++.++..+            .+.+.+++|||++|.||+++|+.+
T Consensus       121 ~~~--~~~l----~~~~~--~----------~v~~~~~~~~a~~------------~~~~~~~e~SA~tg~~v~~~f~~~  170 (175)
T cd01874         121 PST--IEKL----AKNKQ--K----------PITPETGEKLARD------------LKAVKYVECSALTQKGLKNVFDEA  170 (175)
T ss_pred             hhh--HHHh----hhccC--C----------CcCHHHHHHHHHH------------hCCcEEEEecCCCCCCHHHHHHHH
Confidence            211  1111    11110  0          0123445555221            123678899999999999999988


Q ss_pred             HHH
Q psy12099        160 RDI  162 (174)
Q Consensus       160 ~~~  162 (174)
                      .+.
T Consensus       171 ~~~  173 (175)
T cd01874         171 ILA  173 (175)
T ss_pred             HHH
Confidence            763

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.80  E-value=2.2e-19  Score=132.51  Aligned_cols=114  Identities=17%  Similarity=0.397  Sum_probs=87.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|+++++.+|.+||++++++|||+|.          ++..++.++..|+..+.+.....+.|++||+||+|+....
T Consensus        47 i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~----------s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~  116 (167)
T cd04161          47 IFDLGGGANFRGIWVNYYAEAHGLVFVVDS----------SDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNAL  116 (167)
T ss_pred             EEECCCcHHHHHHHHHHHcCCCEEEEEEEC----------CchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCC
Confidence            699999999999999999999999999999          7888999999999999887666789999999999997543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc------hhHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT------ENIRR  154 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~------~~i~~  154 (174)
                      -.   ..+.+.+   ..                         ..   +.+   ..+..+++..|||++|      .++.+
T Consensus       117 ~~---~~i~~~~---~l-------------------------~~---~~~---~~~~~~~~~~~Sa~~g~~~~~~~g~~~  159 (167)
T cd04161         117 LG---ADVIEYL---SL-------------------------EK---LVN---ENKSLCHIEPCSAIEGLGKKIDPSIVE  159 (167)
T ss_pred             CH---HHHHHhc---Cc-------------------------cc---ccC---CCCceEEEEEeEceeCCCCccccCHHH
Confidence            11   1111110   00                         00   000   1124578888999998      89999


Q ss_pred             HHHHHHH
Q psy12099        155 VFNDCRD  161 (174)
Q Consensus       155 ~f~~~~~  161 (174)
                      .|+||..
T Consensus       160 ~~~wl~~  166 (167)
T cd04161         160 GLRWLLA  166 (167)
T ss_pred             HHHHHhc
Confidence            9999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04144 Ras2 Ras2 subfamily

Probab=99.80  E-value=2.5e-19  Score=134.78  Aligned_cols=114  Identities=15%  Similarity=0.154  Sum_probs=88.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW--LRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~--~~~~~iilv~NK~Dl~~   78 (174)
                      ||||+|+++++.+|..||++++++|+|||+          ++.++++....|+..+.+...  ..+.|++|+|||+|+..
T Consensus        51 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~  120 (190)
T cd04144          51 VLDTAGQEEYTALRDQWIREGEGFILVYSI----------TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY  120 (190)
T ss_pred             EEECCCchhhHHHHHHHHHhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence            699999999999999999999999999999          899999998888887754322  35789999999999864


Q ss_pred             HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099         79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND  158 (174)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~  158 (174)
                      ++..    .                          .+.+..+..             ...+.++++||+++.||+++|++
T Consensus       121 ~~~v----~--------------------------~~~~~~~~~-------------~~~~~~~e~SAk~~~~v~~l~~~  157 (190)
T cd04144         121 EREV----S--------------------------TEEGAALAR-------------RLGCEFIEASAKTNVNVERAFYT  157 (190)
T ss_pred             cCcc----C--------------------------HHHHHHHHH-------------HhCCEEEEecCCCCCCHHHHHHH
Confidence            3211    0                          111222211             12246789999999999999999


Q ss_pred             HHHHHHHhh
Q psy12099        159 CRDIIQRMH  167 (174)
Q Consensus       159 ~~~~i~~~~  167 (174)
                      +.+.+..+.
T Consensus       158 l~~~l~~~~  166 (190)
T cd04144         158 LVRALRQQR  166 (190)
T ss_pred             HHHHHHHhh
Confidence            999887554

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04176 Rap2 Rap2 subgroup

Probab=99.80  E-value=2e-19  Score=131.42  Aligned_cols=110  Identities=15%  Similarity=0.154  Sum_probs=86.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++.+++.+...|+..+.+.....+.|++|++||+|+..+.
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~  122 (163)
T cd04176          53 ILDTAGTEQFASMRDLYIKNGQGFIVVYSL----------VNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER  122 (163)
T ss_pred             EEECCCcccccchHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcC
Confidence            699999999999999999999999999999          8999999999998888765445689999999999985422


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..    .                          ..++..+..             ...+.++++||+++.|+.++|.++.
T Consensus       123 ~~----~--------------------------~~~~~~~~~-------------~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176         123 EV----S--------------------------SAEGRALAE-------------EWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             cc----C--------------------------HHHHHHHHH-------------HhCCEEEEecCCCCCCHHHHHHHHH
Confidence            11    0                          111222210             1124567999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            643

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.80  E-value=2.6e-19  Score=129.88  Aligned_cols=109  Identities=17%  Similarity=0.109  Sum_probs=86.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++++|+|+          ++..++.+...|+..+.+.....+.|++|++||+|+....
T Consensus        53 i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~----------~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~  122 (162)
T cd04138          53 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAI----------NSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAART  122 (162)
T ss_pred             EEECCCCcchHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccce
Confidence            599999999999999999999999999999          7888999988888888765545678999999999986522


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                               ..++..+..             ...+.++++||+++.||+++|+++.
T Consensus       123 ~~-------------------------------~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138         123 VS-------------------------------SRQGQDLAK-------------SYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             ec-------------------------------HHHHHHHHH-------------HhCCeEEEecCCCCCCHHHHHHHHH
Confidence            11                               111222211             1224578999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04138         159 REI  161 (162)
T ss_pred             HHh
Confidence            654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PTZ00369 Ras-like protein; Provisional

Probab=99.80  E-value=3.7e-19  Score=133.76  Aligned_cols=113  Identities=17%  Similarity=0.131  Sum_probs=89.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|++.++.+|..|+++++++|+|+|+          ++..++.....|+..+.+.....++|++|++||+|+..+.
T Consensus        57 i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~----------s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~  126 (189)
T PTZ00369         57 ILDTAGQEEYSAMRDQYMRTGQGFLCVYSI----------TSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSER  126 (189)
T ss_pred             EEeCCCCccchhhHHHHhhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence            699999999999999999999999999999          8999999999999888765445688999999999985432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..    .                          .+++..+..             ...+.++++||+++.||.++|.++.
T Consensus       127 ~i----~--------------------------~~~~~~~~~-------------~~~~~~~e~Sak~~~gi~~~~~~l~  163 (189)
T PTZ00369        127 QV----S--------------------------TGEGQELAK-------------SFGIPFLETSAKQRVNVDEAFYELV  163 (189)
T ss_pred             cc----C--------------------------HHHHHHHHH-------------HhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            11    0                          112222211             1124678999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.+.
T Consensus       164 ~~l~~~  169 (189)
T PTZ00369        164 REIRKY  169 (189)
T ss_pred             HHHHHH
Confidence            888754

>cd04154 Arl2 Arl2 subfamily

Probab=99.80  E-value=3.5e-19  Score=131.81  Aligned_cols=111  Identities=23%  Similarity=0.321  Sum_probs=86.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||++++.+|..||++++++|+|+|.          ++..++.+...|+..+++.....++|++|++||+|+.+..
T Consensus        62 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  131 (173)
T cd04154          62 IWDVGGQKTLRPYWRNYFESTDALIWVVDS----------SDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL  131 (173)
T ss_pred             EEECCCCHHHHHHHHHHhCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC
Confidence            699999999999999999999999999999          7888999999999998876555789999999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      .   ...+++++...                                  .   ...+.+.++++||++|.||+++|+++.
T Consensus       132 ~---~~~~~~~~~~~----------------------------------~---~~~~~~~~~~~Sa~~g~gi~~l~~~l~  171 (173)
T cd04154         132 S---EEEIREALELD----------------------------------K---ISSHHWRIQPCSAVTGEGLLQGIDWLV  171 (173)
T ss_pred             C---HHHHHHHhCcc----------------------------------c---cCCCceEEEeccCCCCcCHHHHHHHHh
Confidence            1   11111111100                                  0   123457889999999999999999986


Q ss_pred             H
Q psy12099        161 D  161 (174)
Q Consensus       161 ~  161 (174)
                      +
T Consensus       172 ~  172 (173)
T cd04154         172 D  172 (173)
T ss_pred             c
Confidence            4

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04109 Rab28 Rab28 subfamily

Probab=99.79  E-value=3.4e-19  Score=136.65  Aligned_cols=114  Identities=14%  Similarity=0.145  Sum_probs=88.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW--LRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~--~~~~~iilv~NK~Dl~~   78 (174)
                      ||||+||+.++.+|..||++++++|+|||+          ++.++++....|+..+.+...  ..++|++||+||+|+.+
T Consensus        54 i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~----------t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~  123 (215)
T cd04109          54 VWDIGGQSIGGKMLDKYIYGAHAVFLVYDV----------TNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH  123 (215)
T ss_pred             EEECCCcHHHHHHHHHHhhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence            699999999999999999999999999999          899999999888888765432  24578999999999964


Q ss_pred             HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099         79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND  158 (174)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~  158 (174)
                      ++..                              ..+.+..+..             ...+.++++||++|+||+++|++
T Consensus       124 ~~~v------------------------------~~~~~~~~~~-------------~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109         124 NRTV------------------------------KDDKHARFAQ-------------ANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             cccc------------------------------CHHHHHHHHH-------------HcCCEEEEEECCCCCCHHHHHHH
Confidence            3211                              0122222211             12256778999999999999999


Q ss_pred             HHHHHHHhh
Q psy12099        159 CRDIIQRMH  167 (174)
Q Consensus       159 ~~~~i~~~~  167 (174)
                      +.+.+....
T Consensus       161 l~~~l~~~~  169 (215)
T cd04109         161 LAAELLGVD  169 (215)
T ss_pred             HHHHHHhcc
Confidence            999987653

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.79  E-value=4.5e-19  Score=130.52  Aligned_cols=67  Identities=22%  Similarity=0.500  Sum_probs=60.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +||++||++++.+|.+||++++++|+|+|.          ++..++.....|+..+....  .++|++|++||+|+..+
T Consensus        48 i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~----------t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~  114 (164)
T cd04162          48 LLEIGGSQNLRKYWKRYLSGSQGLIFVVDS----------ADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAA  114 (164)
T ss_pred             EEECCCCcchhHHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCC
Confidence            699999999999999999999999999999          78889999999999887653  58999999999998654

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.79  E-value=3.5e-19  Score=132.40  Aligned_cols=120  Identities=13%  Similarity=0.163  Sum_probs=86.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+||+.++.+|..|+++++++|+|||+          +++++|.+.. .|+..+...  ..+.|++|+|||+|+...
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~  120 (174)
T cd01871          53 LWDTAGQEDYDRLRPLSYPQTDVFLICFSL----------VSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDD  120 (174)
T ss_pred             EEECCCchhhhhhhhhhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccC
Confidence            699999999999999999999999999999          8999999986 466665443  257999999999999643


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      +..  ..++.+..   .   .          .-..+++.++..+            .+.+.+++|||+++.||+++|+.+
T Consensus       121 ~~~--~~~~~~~~---~---~----------~v~~~~~~~~~~~------------~~~~~~~e~Sa~~~~~i~~~f~~l  170 (174)
T cd01871         121 KDT--IEKLKEKK---L---T----------PITYPQGLAMAKE------------IGAVKYLECSALTQKGLKTVFDEA  170 (174)
T ss_pred             hhh--HHHHhhcc---C---C----------CCCHHHHHHHHHH------------cCCcEEEEecccccCCHHHHHHHH
Confidence            321  11111110   0   0          0123445554321            122467899999999999999998


Q ss_pred             HHH
Q psy12099        160 RDI  162 (174)
Q Consensus       160 ~~~  162 (174)
                      .+.
T Consensus       171 ~~~  173 (174)
T cd01871         171 IRA  173 (174)
T ss_pred             HHh
Confidence            763

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04128 Spg1 Spg1p

Probab=99.79  E-value=6.9e-19  Score=131.85  Aligned_cols=115  Identities=21%  Similarity=0.273  Sum_probs=86.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||++|+.+|..|+++++++|+|||+          ++..++.++..|+..+.+.. ....| +|+|||+|+..+.
T Consensus        53 iwDt~G~~~~~~~~~~~~~~a~~iilv~D~----------t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~  120 (182)
T cd04128          53 IWDLGGQREFINMLPLVCNDAVAILFMFDL----------TRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADL  120 (182)
T ss_pred             EEeCCCchhHHHhhHHHCcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccc
Confidence            699999999999999999999999999999          89999999999999886643 23566 5789999996421


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      -.  . .-.                      ...+++.+|..             .....+++|||+++.||+++|+++.
T Consensus       121 ~~--~-~~~----------------------~~~~~~~~~a~-------------~~~~~~~e~SAk~g~~v~~lf~~l~  162 (182)
T cd04128         121 PP--E-EQE----------------------EITKQARKYAK-------------AMKAPLIFCSTSHSINVQKIFKIVL  162 (182)
T ss_pred             cc--h-hhh----------------------hhHHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            00  0 000                      00122333311             1225678999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.++.
T Consensus       163 ~~l~~  167 (182)
T cd04128         163 AKAFD  167 (182)
T ss_pred             HHHHh
Confidence            98875

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04111 Rab39 Rab39 subfamily

Probab=99.79  E-value=5.6e-19  Score=135.28  Aligned_cols=113  Identities=15%  Similarity=0.114  Sum_probs=90.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||++++.+|..|+++++++|+|||+          ++.++++++..|+..+.+......+|++|++||+|+...+
T Consensus        56 i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~----------~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~  125 (211)
T cd04111          56 LWDTAGQERFRSITRSYYRNSVGVLLVFDI----------TNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQR  125 (211)
T ss_pred             EEeCCcchhHHHHHHHHhcCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccc
Confidence            699999999999999999999999999999          8999999999999998765444568899999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..             ...+.++++||+++.||.++|+++.
T Consensus       126 ~v------------------------------~~~~~~~~~~-------------~~~~~~~e~Sak~g~~v~e~f~~l~  162 (211)
T cd04111         126 QV------------------------------TREEAEKLAK-------------DLGMKYIETSARTGDNVEEAFELLT  162 (211)
T ss_pred             cc------------------------------CHHHHHHHHH-------------HhCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11                              0112222211             1236788999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.+.
T Consensus       163 ~~~~~~  168 (211)
T cd04111         163 QEIYER  168 (211)
T ss_pred             HHHHHH
Confidence            988765

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.79  E-value=1e-18  Score=130.71  Aligned_cols=117  Identities=21%  Similarity=0.301  Sum_probs=88.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|.          ++.+++.....|+..+.......+.|++|++||+|+....
T Consensus        56 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~----------~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~  125 (183)
T cd04152          56 FWDVGGQEKLRPLWKSYTRCTDGIVFVVDS----------VDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL  125 (183)
T ss_pred             EEECCCcHhHHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC
Confidence            699999999999999999999999999999          7888888888888887765445678999999999986421


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                       .  ...+.....                                  ++..  .....+.++++||++++|++++|+++.
T Consensus       126 -~--~~~~~~~~~----------------------------------~~~~--~~~~~~~~~~~SA~~~~gi~~l~~~l~  166 (183)
T cd04152         126 -S--VSEVEKLLA----------------------------------LHEL--SASTPWHVQPACAIIGEGLQEGLEKLY  166 (183)
T ss_pred             -C--HHHHHHHhC----------------------------------cccc--CCCCceEEEEeecccCCCHHHHHHHHH
Confidence             1  011111111                                  0000  112235678999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.++.+
T Consensus       167 ~~l~~~  172 (183)
T cd04152         167 EMILKR  172 (183)
T ss_pred             HHHHHH
Confidence            988643

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.79  E-value=6e-19  Score=130.01  Aligned_cols=108  Identities=16%  Similarity=0.097  Sum_probs=87.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||+.+..++.++|++++++|+|+|+          ++.+++.....|+..+.+..  .++|+++++||+|+....
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~  120 (166)
T cd00877          53 VWDTAGQEKFGGLRDGYYIGGQCAIIMFDV----------TSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRK  120 (166)
T ss_pred             EEECCCChhhccccHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhccccc
Confidence            699999999999999999999999999999          89999999988988886653  389999999999996322


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                                ..+.++.             ..+.+.+++|||+++.||+++|+++.
T Consensus       121 ~~--------------------------------~~~~~~~-------------~~~~~~~~e~Sa~~~~~v~~~f~~l~  155 (166)
T cd00877         121 VK--------------------------------AKQITFH-------------RKKNLQYYEISAKSNYNFEKPFLWLA  155 (166)
T ss_pred             CC--------------------------------HHHHHHH-------------HHcCCEEEEEeCCCCCChHHHHHHHH
Confidence            11                                0111111             12346788999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.+++
T Consensus       156 ~~~~~  160 (166)
T cd00877         156 RKLLG  160 (166)
T ss_pred             HHHHh
Confidence            99875

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04134 Rho3 Rho3 subfamily

Probab=99.79  E-value=5e-19  Score=133.07  Aligned_cols=124  Identities=12%  Similarity=0.169  Sum_probs=89.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+||+.++.+|..||++++++|+|||+          ++.++++... .|+..+...  ..+.|++||+||+|+..+
T Consensus        52 i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv----------~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~  119 (189)
T cd04134          52 LWDTAGQEEFDRLRSLSYADTDVIMLCFSV----------DSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREA  119 (189)
T ss_pred             EEECCCChhccccccccccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccC
Confidence            699999999999999999999999999999          8999998875 577776543  247899999999999764


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...  ...+.    ....            ..-..+++.++...            .+.+.+++|||+++.||+++|.++
T Consensus       120 ~~~--~~~~~----~~~~------------~~v~~~~~~~~~~~------------~~~~~~~e~SAk~~~~v~e~f~~l  169 (189)
T cd04134         120 RNE--RDDLQ----RYGK------------HTISYEEGLAVAKR------------INALRYLECSAKLNRGVNEAFTEA  169 (189)
T ss_pred             hhh--HHHHh----hccC------------CCCCHHHHHHHHHH------------cCCCEEEEccCCcCCCHHHHHHHH
Confidence            322  10110    0000            00012334333211            123567899999999999999999


Q ss_pred             HHHHHHh
Q psy12099        160 RDIIQRM  166 (174)
Q Consensus       160 ~~~i~~~  166 (174)
                      .+.++..
T Consensus       170 ~~~~~~~  176 (189)
T cd04134         170 ARVALNV  176 (189)
T ss_pred             HHHHhcc
Confidence            9988754

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01865 Rab3 Rab3 subfamily

Probab=99.79  E-value=6.9e-19  Score=129.18  Aligned_cols=111  Identities=21%  Similarity=0.201  Sum_probs=87.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..++++++++++|+|+          ++.++++....|+..+... ...+.|+++++||+|+.+++
T Consensus        54 l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~----------~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~  122 (165)
T cd01865          54 IWDTAGQERYRTITTAYYRGAMGFILMYDI----------TNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDER  122 (165)
T ss_pred             EEECCChHHHHHHHHHHccCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCccc
Confidence            699999999999999999999999999999          7889999999998887543 33578999999999996543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.+.++..             ...+.++++||+++.||.++|+++.
T Consensus       123 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (165)
T cd01865         123 VV------------------------------SSERGRQLAD-------------QLGFEFFEASAKENINVKQVFERLV  159 (165)
T ss_pred             cc------------------------------CHHHHHHHHH-------------HcCCEEEEEECCCCCCHHHHHHHHH
Confidence            11                              0122222211             1224678999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.+.+
T Consensus       160 ~~~~~  164 (165)
T cd01865         160 DIICD  164 (165)
T ss_pred             HHHHh
Confidence            87654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04157 Arl6 Arl6 subfamily

Probab=99.78  E-value=7.7e-19  Score=127.79  Aligned_cols=111  Identities=20%  Similarity=0.294  Sum_probs=84.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCC--CCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWL--RTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~--~~~~iilv~NK~Dl~~   78 (174)
                      +|||+|+++++.+|..||++++++|||+|.          ++..++..+..|+..+.+.+..  .+.|++|++||+|+..
T Consensus        49 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~  118 (162)
T cd04157          49 AFDMSGQGKYRGLWEHYYKNIQGIIFVIDS----------SDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD  118 (162)
T ss_pred             EEECCCCHhhHHHHHHHHccCCEEEEEEeC----------CcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence            699999999999999999999999999999          7888998888888888776433  4789999999999864


Q ss_pred             HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099         79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND  158 (174)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~  158 (174)
                      +...   ..+.+.+.                                  +..   .....+.++++||+++.||+++|++
T Consensus       119 ~~~~---~~~~~~l~----------------------------------~~~---~~~~~~~~~~~Sa~~g~gv~~~~~~  158 (162)
T cd04157         119 ALTA---VKITQLLG----------------------------------LEN---IKDKPWHIFASNALTGEGLDEGVQW  158 (162)
T ss_pred             CCCH---HHHHHHhC----------------------------------Ccc---ccCceEEEEEeeCCCCCchHHHHHH
Confidence            3210   11111100                                  000   1123466789999999999999999


Q ss_pred             HHH
Q psy12099        159 CRD  161 (174)
Q Consensus       159 ~~~  161 (174)
                      +.+
T Consensus       159 l~~  161 (162)
T cd04157         159 LQA  161 (162)
T ss_pred             Hhc
Confidence            865

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04117 Rab15 Rab15 subfamily

Probab=99.78  E-value=7.6e-19  Score=128.72  Aligned_cols=108  Identities=15%  Similarity=0.131  Sum_probs=85.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||++|+++++.+|..|+++++++++|||+          ++.+++++...|+..+.+. ...+.|+++++||+|+..++
T Consensus        53 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~  121 (161)
T cd04117          53 IWDTAGQERYQTITKQYYRRAQGIFLVYDI----------SSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKR  121 (161)
T ss_pred             EEeCCCcHhHHhhHHHHhcCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECccccccc
Confidence            699999999999999999999999999999          8999999999999887654 33578999999999986543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..             .....+++|||+++.||+++|.++.
T Consensus       122 ~v------------------------------~~~~~~~~~~-------------~~~~~~~e~Sa~~~~~v~~~f~~l~  158 (161)
T cd04117         122 QV------------------------------GDEQGNKLAK-------------EYGMDFFETSACTNSNIKESFTRLT  158 (161)
T ss_pred             CC------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11                              0123333321             1124568999999999999999997


Q ss_pred             HH
Q psy12099        161 DI  162 (174)
Q Consensus       161 ~~  162 (174)
                      +.
T Consensus       159 ~~  160 (161)
T cd04117         159 EL  160 (161)
T ss_pred             hh
Confidence            64

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.78  E-value=9.1e-19  Score=135.11  Aligned_cols=125  Identities=14%  Similarity=0.128  Sum_probs=88.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||+.|+.+|+.||++++++|+|||+          ++..+|+.+..+|...+.. ..+++|++|||||+|+....
T Consensus        53 iwDt~G~e~~~~l~~~~~~~~d~illvfdi----------s~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~  121 (222)
T cd04173          53 MWDTSGSSYYDNVRPLAYPDSDAVLICFDI----------SRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDL  121 (222)
T ss_pred             EEeCCCcHHHHHHhHHhccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccch
Confidence            699999999999999999999999999999          8999999997655554443 23679999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchh-HHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTEN-IRRVFNDC  159 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~-i~~~f~~~  159 (174)
                      -.     +...-. ..  ..|.          ..+++..+...            ..-+.+++|||+++.| |+++|..+
T Consensus       122 ~~-----~~~~~~-~~--~~pI----------s~e~g~~~ak~------------~~~~~y~E~SAk~~~~~V~~~F~~~  171 (222)
T cd04173         122 AT-----LRELSK-QR--LIPV----------THEQGTVLAKQ------------VGAVSYVECSSRSSERSVRDVFHVA  171 (222)
T ss_pred             hh-----hhhhhh-cc--CCcc----------CHHHHHHHHHH------------cCCCEEEEcCCCcCCcCHHHHHHHH
Confidence            11     111000 00  0111          23344444211            1224788999999986 99999999


Q ss_pred             HHHHHHh
Q psy12099        160 RDIIQRM  166 (174)
Q Consensus       160 ~~~i~~~  166 (174)
                      ....+.+
T Consensus       172 ~~~~~~~  178 (222)
T cd04173         172 TVASLGR  178 (222)
T ss_pred             HHHHHhc
Confidence            9987765

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04116 Rab9 Rab9 subfamily

Probab=99.78  E-value=7.3e-19  Score=129.35  Aligned_cols=109  Identities=16%  Similarity=0.170  Sum_probs=84.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC---CCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW---LRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~---~~~~~iilv~NK~Dl~   77 (174)
                      |||++||++++.+|..|+++++++|+|||+          ++.+++.....|...+.....   ..++|++|++||+|+.
T Consensus        58 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  127 (170)
T cd04116          58 IWDTAGQERFRSLRTPFYRGSDCCLLTFAV----------DDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP  127 (170)
T ss_pred             EEeCCChHHHHHhHHHHhcCCCEEEEEEEC----------CCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence            699999999999999999999999999999          889999998888887765432   3568999999999986


Q ss_pred             hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099         78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN  157 (174)
Q Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~  157 (174)
                      ...+.                               .+++.++..+            .....++++||+++.||.++|+
T Consensus       128 ~~~~~-------------------------------~~~~~~~~~~------------~~~~~~~e~Sa~~~~~v~~~~~  164 (170)
T cd04116         128 ERQVS-------------------------------TEEAQAWCRE------------NGDYPYFETSAKDATNVAAAFE  164 (170)
T ss_pred             ccccC-------------------------------HHHHHHHHHH------------CCCCeEEEEECCCCCCHHHHHH
Confidence            32111                               1223333211            1124678999999999999999


Q ss_pred             HHHHH
Q psy12099        158 DCRDI  162 (174)
Q Consensus       158 ~~~~~  162 (174)
                      .+.+.
T Consensus       165 ~~~~~  169 (170)
T cd04116         165 EAVRR  169 (170)
T ss_pred             HHHhh
Confidence            98864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04110 Rab35 Rab35 subfamily

Probab=99.78  E-value=1.5e-18  Score=131.59  Aligned_cols=113  Identities=19%  Similarity=0.179  Sum_probs=89.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||++||++++.+|..|+++++++|+|+|+          ++.+++..+..|+..+...  ....|++|++||+|+...+
T Consensus        59 l~D~~G~~~~~~~~~~~~~~a~~iilv~D~----------~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~  126 (199)
T cd04110          59 IWDTAGQERFRTITSTYYRGTHGVIVVYDV----------TNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERK  126 (199)
T ss_pred             EEeCCCchhHHHHHHHHhCCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccccccc
Confidence            699999999999999999999999999999          8899999999999887654  2578999999999986432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..             ...+.++++||+++.||.++|+++.
T Consensus       127 ~~------------------------------~~~~~~~~~~-------------~~~~~~~e~Sa~~~~gi~~lf~~l~  163 (199)
T cd04110         127 VV------------------------------ETEDAYKFAG-------------QMGISLFETSAKENINVEEMFNCIT  163 (199)
T ss_pred             cc------------------------------CHHHHHHHHH-------------HcCCEEEEEECCCCcCHHHHHHHHH
Confidence            11                              0122222221             1125678999999999999999999


Q ss_pred             HHHHHhhh
Q psy12099        161 DIIQRMHL  168 (174)
Q Consensus       161 ~~i~~~~~  168 (174)
                      +.++..+.
T Consensus       164 ~~~~~~~~  171 (199)
T cd04110         164 ELVLRAKK  171 (199)
T ss_pred             HHHHHhhh
Confidence            99987543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0075|consensus

Probab=99.77  E-value=1.7e-18  Score=122.96  Aligned_cols=113  Identities=21%  Similarity=0.266  Sum_probs=94.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||+|||.+||++|..|++++++++||+|.          .+++.+..+...+.+++..+....+|++++|||.|++.+.
T Consensus        69 lwD~gGq~rfrsmWerycR~v~aivY~VDa----------ad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL  138 (186)
T KOG0075|consen   69 LWDLGGQPRFRSMWERYCRGVSAIVYVVDA----------ADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL  138 (186)
T ss_pred             EEecCCCccHHHHHHHHhhcCcEEEEEeec----------CCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc
Confidence            699999999999999999999999999999          6899999999999999999999999999999999998753


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      -.   ..+                                |.+.  .+.   ....+.+-.+..|+++..||+.+.+|+.
T Consensus       139 ~~---~~l--------------------------------i~rm--gL~---sitdREvcC~siScke~~Nid~~~~Wli  178 (186)
T KOG0075|consen  139 SK---IAL--------------------------------IERM--GLS---SITDREVCCFSISCKEKVNIDITLDWLI  178 (186)
T ss_pred             cH---HHH--------------------------------HHHh--Ccc---ccccceEEEEEEEEcCCccHHHHHHHHH
Confidence            22   111                                1100  011   1456889999999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +..
T Consensus       179 ~hs  181 (186)
T KOG0075|consen  179 EHS  181 (186)
T ss_pred             HHh
Confidence            754

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.77  E-value=2.1e-18  Score=126.46  Aligned_cols=111  Identities=20%  Similarity=0.185  Sum_probs=88.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|+++++.+|..|+++++++|+|+|+          ++.+++.+...|+..+.... ..+.|+++++||+|+...+
T Consensus        55 i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~----------~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~  123 (166)
T cd01869          55 IWDTAGQERFRTITSSYYRGAHGIIIVYDV----------TDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKR  123 (166)
T ss_pred             EEECCCcHhHHHHHHHHhCcCCEEEEEEEC----------cCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhccccc
Confidence            699999999999999999999999999999          88999999999998875542 3568999999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..             ...+.++++||+++.||.++|..+.
T Consensus       124 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~v~~~~~~i~  160 (166)
T cd01869         124 VV------------------------------DYSEAQEFAD-------------ELGIPFLETSAKNATNVEQAFMTMA  160 (166)
T ss_pred             CC------------------------------CHHHHHHHHH-------------HcCCeEEEEECCCCcCHHHHHHHHH
Confidence            11                              1222333321             1235678999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T cd01869         161 REIKK  165 (166)
T ss_pred             HHHHh
Confidence            88763

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04151 Arl1 Arl1 subfamily

Probab=99.77  E-value=1.8e-18  Score=125.99  Aligned_cols=111  Identities=20%  Similarity=0.333  Sum_probs=83.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....++..+++.....+.|++|++||+|+.+..
T Consensus        47 i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~  116 (158)
T cd04151          47 VWDLGGQTSIRPYWRCYYSNTDAIIYVVDS----------TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL  116 (158)
T ss_pred             EEECCCCHHHHHHHHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC
Confidence            699999999999999999999999999999          7777888777888777766555679999999999986431


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..   ..+...+   .                               ...   .....+.++++||+++.||+++|+++.
T Consensus       117 ~~---~~i~~~~---~-------------------------------~~~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~  156 (158)
T cd04151         117 SE---AEISEKL---G-------------------------------LSE---LKDRTWSIFKTSAIKGEGLDEGMDWLV  156 (158)
T ss_pred             CH---HHHHHHh---C-------------------------------ccc---cCCCcEEEEEeeccCCCCHHHHHHHHh
Confidence            00   0111110   0                               000   112345788999999999999999987


Q ss_pred             H
Q psy12099        161 D  161 (174)
Q Consensus       161 ~  161 (174)
                      +
T Consensus       157 ~  157 (158)
T cd04151         157 N  157 (158)
T ss_pred             c
Confidence            5

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.77  E-value=2.3e-18  Score=126.61  Aligned_cols=111  Identities=16%  Similarity=0.147  Sum_probs=88.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++++..+|..++++++++|+|+|+          ++..++.+...|+..+.+.. ..+.|++|++||+|+.+.+
T Consensus        56 l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~  124 (167)
T cd01867          56 IWDTAGQERFRTITTAYYRGAMGIILVYDI----------TDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKR  124 (167)
T ss_pred             EEeCCchHHHHHHHHHHhCCCCEEEEEEEC----------cCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECccccccc
Confidence            699999999999999999999999999999          78999999999988876542 3578999999999997532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.+..+..             .....++++||+++.||+++|+++.
T Consensus       125 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~v~~~~~~i~  161 (167)
T cd01867         125 VV------------------------------SKEEGEALAD-------------EYGIKFLETSAKANINVEEAFFTLA  161 (167)
T ss_pred             CC------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11                              1122233221             1224678999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.+++
T Consensus       162 ~~~~~  166 (167)
T cd01867         162 KDIKK  166 (167)
T ss_pred             HHHHh
Confidence            99875

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.77  E-value=1.2e-18  Score=132.00  Aligned_cols=124  Identities=14%  Similarity=0.125  Sum_probs=81.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+||+.  .+...||++++++|+|||+          +++.+|+.... |...+...  .+++|++|+|||+||...
T Consensus        70 iwDTaG~~~--~~~~~~~~~ad~iilv~d~----------t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~  135 (195)
T cd01873          70 LWDTFGDHD--KDRRFAYGRSDVVLLCFSI----------ASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYA  135 (195)
T ss_pred             EEeCCCChh--hhhcccCCCCCEEEEEEEC----------CChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhcccc
Confidence            699999985  3566799999999999999          89999999874 76666443  247899999999998642


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      .............+....           ...-..+++.++..             +..+.+++|||+++.||+++|+.+
T Consensus       136 ~~~~~~~~~~~~~~~~~~-----------~~~V~~~e~~~~a~-------------~~~~~~~E~SAkt~~~V~e~F~~~  191 (195)
T cd01873         136 DLDEVNRARRPLARPIKN-----------ADILPPETGRAVAK-------------ELGIPYYETSVVTQFGVKDVFDNA  191 (195)
T ss_pred             ccchhhhccccccccccc-----------CCccCHHHHHHHHH-------------HhCCEEEEcCCCCCCCHHHHHHHH
Confidence            110000000000000000           00112445666532             233578899999999999999988


Q ss_pred             HHH
Q psy12099        160 RDI  162 (174)
Q Consensus       160 ~~~  162 (174)
                      .+.
T Consensus       192 ~~~  194 (195)
T cd01873         192 IRA  194 (195)
T ss_pred             HHh
Confidence            753

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.77  E-value=2.9e-18  Score=124.76  Aligned_cols=112  Identities=26%  Similarity=0.434  Sum_probs=85.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++.++..|..++++++++|+|+|.          ++..++.+...++..+++.....+.|++|++||+|+....
T Consensus        48 i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~----------~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  117 (160)
T cd04156          48 VWDVGGQEKMRTVWKCYLENTDGLVYVVDS----------SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL  117 (160)
T ss_pred             EEECCCCHhHHHHHHHHhccCCEEEEEEEC----------CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc
Confidence            699999999999999999999999999999          7888899999999998877666789999999999985321


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                       .  ...+...+   +.                    ..+             ...+.+.+.+|||++++||+++|++|.
T Consensus       118 -~--~~~i~~~~---~~--------------------~~~-------------~~~~~~~~~~~Sa~~~~gv~~~~~~i~  158 (160)
T cd04156         118 -T--AEEITRRF---KL--------------------KKY-------------CSDRDWYVQPCSAVTGEGLAEAFRKLA  158 (160)
T ss_pred             -C--HHHHHHHc---CC--------------------ccc-------------CCCCcEEEEecccccCCChHHHHHHHh
Confidence             0  01111110   00                    000             122346788999999999999999886


Q ss_pred             H
Q psy12099        161 D  161 (174)
Q Consensus       161 ~  161 (174)
                      .
T Consensus       159 ~  159 (160)
T cd04156         159 S  159 (160)
T ss_pred             c
Confidence            4

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.77  E-value=2.4e-18  Score=125.62  Aligned_cols=111  Identities=21%  Similarity=0.206  Sum_probs=87.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||++++.+|..++++++++|+|+|+          ++.+++++...|+..+.+.....+.|+++++||+|+..++
T Consensus        52 i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~  121 (164)
T smart00173       52 ILDTAGQEEFSAMRDQYMRTGEGFLLVYSI----------TDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER  121 (164)
T ss_pred             EEECCCcccchHHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence            699999999999999999999999999999          8899999999998888765444578999999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.+..+..             ...+.+.++||+++.||+++|+++.
T Consensus       122 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~i~~l~~~l~  158 (164)
T smart00173      122 VV------------------------------STEEGKELAR-------------QWGCPFLETSAKERVNVDEAFYDLV  158 (164)
T ss_pred             eE------------------------------cHHHHHHHHH-------------HcCCEEEEeecCCCCCHHHHHHHHH
Confidence            11                              0112222221             1125678999999999999999999


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.+.
T Consensus       159 ~~~~  162 (164)
T smart00173      159 REIR  162 (164)
T ss_pred             HHHh
Confidence            8764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.77  E-value=3.1e-18  Score=128.06  Aligned_cols=117  Identities=18%  Similarity=0.191  Sum_probs=88.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+||++++.+|..++++++++|+|+|+          ++.+++++... |+..+...  ..+.|++|++||+|+..+
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~  120 (187)
T cd04132          53 LWDTAGQEEYDRLRPLSYPDVDVLLICYAV----------DNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKD  120 (187)
T ss_pred             EEECCCchhHHHHHHHhCCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhC
Confidence            699999999999999999999999999999          88999998864 66665432  357899999999999654


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcce-eeeecccccchhHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYC-YPHFTCAVDTENIRRVFND  158 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~-~~~~tsA~d~~~i~~~f~~  158 (174)
                      ...  ...+                        ..+++.++...             ..+ .++++||+++.||.++|..
T Consensus       121 ~~~--~~~v------------------------~~~~~~~~~~~-------------~~~~~~~e~Sa~~~~~v~~~f~~  161 (187)
T cd04132         121 KNL--DRKV------------------------TPAQAESVAKK-------------QGAFAYLECSAKTMENVEEVFDT  161 (187)
T ss_pred             ccc--cCCc------------------------CHHHHHHHHHH-------------cCCcEEEEccCCCCCCHHHHHHH
Confidence            311  0000                        12233443211             112 5789999999999999999


Q ss_pred             HHHHHHHhhh
Q psy12099        159 CRDIIQRMHL  168 (174)
Q Consensus       159 ~~~~i~~~~~  168 (174)
                      +.+.+++...
T Consensus       162 l~~~~~~~~~  171 (187)
T cd04132         162 AIEEALKKEG  171 (187)
T ss_pred             HHHHHHhhhh
Confidence            9999987643

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.76  E-value=2.5e-18  Score=125.37  Aligned_cols=110  Identities=20%  Similarity=0.177  Sum_probs=86.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.+.....+.|++|++||+|+..++
T Consensus        54 i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~  123 (164)
T cd04145          54 ILDTAGQEEFSAMREQYMRTGEGFLLVFSV----------TDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQR  123 (164)
T ss_pred             EEECCCCcchhHHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccc
Confidence            699999999999999999999999999999          7899999999999888765444578999999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.+.++..             ...+.+.++||+++.||+++|+++.
T Consensus       124 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145         124 KV------------------------------SREEGQELAR-------------KLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             ee------------------------------cHHHHHHHHH-------------HcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            11                              0112223321             1224578999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.76  E-value=2.3e-18  Score=125.58  Aligned_cols=111  Identities=15%  Similarity=0.197  Sum_probs=87.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC----CCCCcEEEEEeCCch
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW----LRTISVILFLNKQDL   76 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~----~~~~~iilv~NK~Dl   76 (174)
                      +|||+|++.++.+|..++++++++|+|+|+          ++++++.....|+..+.+...    ..+.|+++++||+|+
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~----------~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  122 (168)
T cd04119          53 FFDLSGHPEYLEVRNEFYKDTQGVLLVYDV----------TDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDL  122 (168)
T ss_pred             EEECCccHHHHHHHHHHhccCCEEEEEEEC----------CCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhc
Confidence            699999999999999999999999999999          788999998888888865432    256899999999998


Q ss_pred             hhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHH
Q psy12099         77 LAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVF  156 (174)
Q Consensus        77 ~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f  156 (174)
                      ..++..                              ..+++..+..             ...+.++++||+++.||.++|
T Consensus       123 ~~~~~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~l~  159 (168)
T cd04119         123 TKHRAV------------------------------SEDEGRLWAE-------------SKGFKYFETSACTGEGVNEMF  159 (168)
T ss_pred             cccccc------------------------------CHHHHHHHHH-------------HcCCeEEEEECCCCCCHHHHH
Confidence            642211                              1122222211             122567899999999999999


Q ss_pred             HHHHHHHH
Q psy12099        157 NDCRDIIQ  164 (174)
Q Consensus       157 ~~~~~~i~  164 (174)
                      +++.+.++
T Consensus       160 ~~l~~~l~  167 (168)
T cd04119         160 QTLFSSIV  167 (168)
T ss_pred             HHHHHHHh
Confidence            99998876

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.76  E-value=2.8e-18  Score=127.25  Aligned_cols=111  Identities=21%  Similarity=0.355  Sum_probs=85.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++..|..||++++++|||+|.          ++.+++.....++..+++.....++|++|++||+|+....
T Consensus        63 l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~----------s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~  132 (174)
T cd04153          63 MWDIGGQESLRSSWNTYYTNTDAVILVIDS----------TDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM  132 (174)
T ss_pred             EEECCCCHHHHHHHHHHhhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC
Confidence            699999999999999999999999999999          7888999998889988877666789999999999986421


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                       .  ...+.+.   .+                               ...   ...+.+.+.++||+++.||+++|+++.
T Consensus       133 -~--~~~i~~~---l~-------------------------------~~~---~~~~~~~~~~~SA~~g~gi~e~~~~l~  172 (174)
T cd04153         133 -T--PAEISES---LG-------------------------------LTS---IRDHTWHIQGCCALTGEGLPEGLDWIA  172 (174)
T ss_pred             -C--HHHHHHH---hC-------------------------------ccc---ccCCceEEEecccCCCCCHHHHHHHHh
Confidence             1  0111111   00                               000   122446788999999999999999986


Q ss_pred             H
Q psy12099        161 D  161 (174)
Q Consensus       161 ~  161 (174)
                      .
T Consensus       173 ~  173 (174)
T cd04153         173 S  173 (174)
T ss_pred             c
Confidence            4

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.76  E-value=3.7e-18  Score=125.96  Aligned_cols=110  Identities=19%  Similarity=0.203  Sum_probs=87.1

Q ss_pred             CeeCCCCchhh-hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDER-RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r-~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+|+++++ .+|.+|+++++++|+|+|+          ++..++.....|+..+.......++|++|++||+|+...
T Consensus        55 i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~  124 (170)
T cd04115          55 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDV----------TNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQ  124 (170)
T ss_pred             EEeCCChHHHHHhhHHHhhcCCCEEEEEEEC----------CCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhh
Confidence            69999999998 5899999999999999999          899999999999988876554568999999999998754


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeeccccc---chhHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVD---TENIRRVF  156 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d---~~~i~~~f  156 (174)
                      +..    +                          .+.+..+..             ...+.+++|||++   +.||+++|
T Consensus       125 ~~~----~--------------------------~~~~~~~~~-------------~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115         125 IQV----P--------------------------TDLAQRFAD-------------AHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             cCC----C--------------------------HHHHHHHHH-------------HcCCcEEEEeccCCcCCCCHHHHH
Confidence            311    0                          112222211             1236678999999   99999999


Q ss_pred             HHHHHHH
Q psy12099        157 NDCRDII  163 (174)
Q Consensus       157 ~~~~~~i  163 (174)
                      ..+.+.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>KOG0076|consensus

Probab=99.76  E-value=6.7e-19  Score=128.08  Aligned_cols=117  Identities=21%  Similarity=0.298  Sum_probs=96.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      .||.|||+..|++|..||..++++||++|.          ++++||+++...|+.++.++...++|+++++||+|+.++.
T Consensus        73 fwdlgGQe~lrSlw~~yY~~~H~ii~viDa----------~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~  142 (197)
T KOG0076|consen   73 FWDLGGQESLRSLWKKYYWLAHGIIYVIDA----------TDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM  142 (197)
T ss_pred             EEEcCChHHHHHHHHHHHHHhceeEEeecC----------CCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh
Confidence            499999999999999999999999999999          8999999999999999999999999999999999998765


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      -.   ..+...|..-                               +.     ...+...+..+||.+|+||++...|+.
T Consensus       143 ~~---~El~~~~~~~-------------------------------e~-----~~~rd~~~~pvSal~gegv~egi~w~v  183 (197)
T KOG0076|consen  143 EA---AELDGVFGLA-------------------------------EL-----IPRRDNPFQPVSALTGEGVKEGIEWLV  183 (197)
T ss_pred             hH---HHHHHHhhhh-------------------------------hh-----cCCccCccccchhhhcccHHHHHHHHH
Confidence            32   2333333210                               00     234456667789999999999999988


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      ..+-++
T Consensus       184 ~~~~kn  189 (197)
T KOG0076|consen  184 KKLEKN  189 (197)
T ss_pred             HHHhhc
Confidence            887655

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.76  E-value=4.5e-18  Score=125.91  Aligned_cols=113  Identities=17%  Similarity=0.149  Sum_probs=86.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||++|+.+|..||++++++|+|+|+          ++..++.....|+..+.+.....++|+++|+||.|+....
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~  122 (170)
T cd04108          53 LWDTAGQERFKCIASTYYRGAQAIIIVFDL----------TDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPA  122 (170)
T ss_pred             EEeCCChHHHHhhHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccc
Confidence            699999999999999999999999999999          7889999999999988765444567899999999985431


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..    ..                        ..+.+..+..             .....+.++||+++.||.++|+.+.
T Consensus       123 ~~----~~------------------------~~~~~~~~~~-------------~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108         123 QY----AL------------------------MEQDAIKLAA-------------EMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             cc----cc------------------------cHHHHHHHHH-------------HcCCeEEEEECCCCCCHHHHHHHHH
Confidence            10    00                        0112222211             1124567999999999999999998


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      ..+.
T Consensus       162 ~~~~  165 (170)
T cd04108         162 ALTF  165 (170)
T ss_pred             HHHH
Confidence            8764

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.76  E-value=3.3e-18  Score=126.21  Aligned_cols=123  Identities=15%  Similarity=0.191  Sum_probs=88.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+||+.++.+|..++++++++|+|||+          ++.++++.... |+..+...  ..+.|++|++||+|+..+
T Consensus        50 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~  117 (174)
T smart00174       50 LWDTAGQEDYDRLRPLSYPDTDVFLICFSV----------DSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLRED  117 (174)
T ss_pred             EEECCCCcccchhchhhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhC
Confidence            699999999999999999999999999999          88999998864 77766543  357999999999999764


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...     ...+.. ...            ..-..+++..+...            .....++++||+++.||+++|+.+
T Consensus       118 ~~~-----~~~~~~-~~~------------~~v~~~~~~~~~~~------------~~~~~~~e~Sa~~~~~v~~lf~~l  167 (174)
T smart00174      118 KST-----LRELSK-QKQ------------EPVTYEQGEALAKR------------IGAVKYLECSALTQEGVREVFEEA  167 (174)
T ss_pred             hhh-----hhhhhc-ccC------------CCccHHHHHHHHHH------------cCCcEEEEecCCCCCCHHHHHHHH
Confidence            321     111111 100            00123344444221            112357899999999999999999


Q ss_pred             HHHHHH
Q psy12099        160 RDIIQR  165 (174)
Q Consensus       160 ~~~i~~  165 (174)
                      .+.+++
T Consensus       168 ~~~~~~  173 (174)
T smart00174      168 IRAALN  173 (174)
T ss_pred             HHHhcC
Confidence            988754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04112 Rab26 Rab26 subfamily

Probab=99.76  E-value=4.9e-18  Score=127.82  Aligned_cols=115  Identities=16%  Similarity=0.165  Sum_probs=89.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||++++..|..|+++++++|+|+|+          ++.+++++...|+..+... ...+.|++|++||+|+..++
T Consensus        54 i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~----------~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~  122 (191)
T cd04112          54 IWDTAGQERFRSVTHAYYRDAHALLLLYDI----------TNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGER  122 (191)
T ss_pred             EEeCCCcHHHHHhhHHHccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhcc
Confidence            699999999999999999999999999999          7889999998888887654 23478999999999986432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..    .                          .+++..+. ..            ..+.++++||+++.|++++|.++.
T Consensus       123 ~~----~--------------------------~~~~~~l~-~~------------~~~~~~e~Sa~~~~~v~~l~~~l~  159 (191)
T cd04112         123 VV----K--------------------------REDGERLA-KE------------YGVPFMETSAKTGLNVELAFTAVA  159 (191)
T ss_pred             cc----C--------------------------HHHHHHHH-HH------------cCCeEEEEeCCCCCCHHHHHHHHH
Confidence            11    0                          11122221 11            124678999999999999999999


Q ss_pred             HHHHHhhhh
Q psy12099        161 DIIQRMHLR  169 (174)
Q Consensus       161 ~~i~~~~~~  169 (174)
                      +.+......
T Consensus       160 ~~~~~~~~~  168 (191)
T cd04112         160 KELKHRKYE  168 (191)
T ss_pred             HHHHHhccc
Confidence            999876543

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04124 RabL2 RabL2 subfamily

Probab=99.75  E-value=9.5e-18  Score=122.80  Aligned_cols=108  Identities=19%  Similarity=0.251  Sum_probs=85.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||++++.+|..|+++++++|+|+|+          ++..++.....|+..+.+.  ..+.|+++++||+|+....
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~  120 (161)
T cd04124          53 FWDTAGQERFQTMHASYYHKAHACILVFDV----------TRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV  120 (161)
T ss_pred             EEeCCCchhhhhhhHHHhCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH
Confidence            699999999999999999999999999999          7888988888888887553  2468999999999984321


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                       .                                +++.++..             ...+.++++||+++.|+.++|+.+.
T Consensus       121 -~--------------------------------~~~~~~~~-------------~~~~~~~~~Sa~~~~gv~~l~~~l~  154 (161)
T cd04124         121 -T--------------------------------QKKFNFAE-------------KHNLPLYYVSAADGTNVVKLFQDAI  154 (161)
T ss_pred             -H--------------------------------HHHHHHHH-------------HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence             1                                01111210             1124577899999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.++++
T Consensus       155 ~~~~~~  160 (161)
T cd04124         155 KLAVSY  160 (161)
T ss_pred             HHHHhc
Confidence            988764

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04140 ARHI_like ARHI subfamily

Probab=99.75  E-value=5.1e-18  Score=124.54  Aligned_cols=108  Identities=17%  Similarity=0.170  Sum_probs=82.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC--CCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR--WLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~--~~~~~~iilv~NK~Dl~~   78 (174)
                      +|||+|+++++.+|..++++++++|+|+|+          ++..++++...|++.+.+..  ...++|++|++||+|+..
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  122 (165)
T cd04140          53 ITDTTGSHQFPAMQRLSISKGHAFILVYSV----------TSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH  122 (165)
T ss_pred             EEECCCCCcchHHHHHHhhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence            699999999999999999999999999999          88999999888887664322  235789999999999854


Q ss_pred             HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099         79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND  158 (174)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~  158 (174)
                      .+..                              ..+.+..+..             ...+.++++||+++.||+++|++
T Consensus       123 ~~~v------------------------------~~~~~~~~~~-------------~~~~~~~e~SA~~g~~v~~~f~~  159 (165)
T cd04140         123 KREV------------------------------SSNEGAACAT-------------EWNCAFMETSAKTNHNVQELFQE  159 (165)
T ss_pred             cCee------------------------------cHHHHHHHHH-------------HhCCcEEEeecCCCCCHHHHHHH
Confidence            2110                              0112222211             12245789999999999999999


Q ss_pred             HHH
Q psy12099        159 CRD  161 (174)
Q Consensus       159 ~~~  161 (174)
                      +.+
T Consensus       160 l~~  162 (165)
T cd04140         160 LLN  162 (165)
T ss_pred             HHh
Confidence            864

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.75  E-value=3.5e-18  Score=125.25  Aligned_cols=107  Identities=24%  Similarity=0.326  Sum_probs=81.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||+.     ..|+++++++|+|||+          +++++|+++..|+..+.......++|++|+|||.|+....
T Consensus        51 i~D~~g~~~-----~~~~~~~~~~ilv~d~----------~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~  115 (158)
T cd04103          51 IRDEGGAPD-----AQFASWVDAVIFVFSL----------ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN  115 (158)
T ss_pred             EEECCCCCc-----hhHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC
Confidence            699999985     3578999999999999          8999999999999998776555779999999999985321


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                          ...+                        ..+++.++..+            .+.+.+++|||+++.||+++|..+.
T Consensus       116 ----~~~v------------------------~~~~~~~~~~~------------~~~~~~~e~SAk~~~~i~~~f~~~~  155 (158)
T cd04103         116 ----PRVI------------------------DDARARQLCAD------------MKRCSYYETCATYGLNVERVFQEAA  155 (158)
T ss_pred             ----Cccc------------------------CHHHHHHHHHH------------hCCCcEEEEecCCCCCHHHHHHHHH
Confidence                1111                        12234444221            1236788999999999999999987


Q ss_pred             HH
Q psy12099        161 DI  162 (174)
Q Consensus       161 ~~  162 (174)
                      +.
T Consensus       156 ~~  157 (158)
T cd04103         156 QK  157 (158)
T ss_pred             hh
Confidence            54

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.75  E-value=5.7e-18  Score=123.41  Aligned_cols=110  Identities=21%  Similarity=0.224  Sum_probs=90.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||++|++++..++..++++++++|+|||+          ++.++++....|+..+..... .++|++|+|||.|+..++
T Consensus        52 i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~----------~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~  120 (162)
T PF00071_consen   52 IWDTSGQERFDSLRDIFYRNSDAIIIVFDV----------TDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDER  120 (162)
T ss_dssp             EEEETTSGGGHHHHHHHHTTESEEEEEEET----------TBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGS
T ss_pred             cccccccccccccccccccccccccccccc----------ccccccccccccccccccccc-ccccceeeeccccccccc
Confidence            699999999999999999999999999999          899999999999998866543 568999999999997632


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              +.+++.++..             .....+.++||+++.||.++|..+.
T Consensus       121 ~v------------------------------~~~~~~~~~~-------------~~~~~~~e~Sa~~~~~v~~~f~~~i  157 (162)
T PF00071_consen  121 EV------------------------------SVEEAQEFAK-------------ELGVPYFEVSAKNGENVKEIFQELI  157 (162)
T ss_dssp             SS------------------------------CHHHHHHHHH-------------HTTSEEEEEBTTTTTTHHHHHHHHH
T ss_pred             cc------------------------------hhhHHHHHHH-------------HhCCEEEEEECCCCCCHHHHHHHHH
Confidence            11                              1233444432             1227788999999999999999999


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.|+
T Consensus       158 ~~i~  161 (162)
T PF00071_consen  158 RKIL  161 (162)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9886

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd00879 Sar1 Sar1 subfamily

Probab=99.75  E-value=6.7e-18  Score=126.50  Aligned_cols=123  Identities=20%  Similarity=0.357  Sum_probs=90.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++.+|.+|+++++++|+|+|+          ++.+++.+...++..+++.....+.|+++++||+|+... 
T Consensus        67 l~D~~G~~~~~~~~~~~~~~ad~iilV~D~----------~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~-  135 (190)
T cd00879          67 TFDLGGHEQARRLWKDYFPEVDGIVFLVDA----------ADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA-  135 (190)
T ss_pred             EEECCCCHHHHHHHHHHhccCCEEEEEEEC----------CcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC-
Confidence            599999999999999999999999999999          788889989999999987666678999999999998642 


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      +.  ...+++++..+.-..                       .+...+..   ...+.+.+++|||++++||.++|+++.
T Consensus       136 ~~--~~~~~~~~~~~~~~~-----------------------~~~~~~~~---~~~~~~~~~~~Sa~~~~gv~e~~~~l~  187 (190)
T cd00879         136 VS--EEELRQALGLYGTTT-----------------------GKGVSLKV---SGIRPIEVFMCSVVKRQGYGEAFRWLS  187 (190)
T ss_pred             cC--HHHHHHHhCcccccc-----------------------cccccccc---cCceeEEEEEeEecCCCChHHHHHHHH
Confidence            12  233444443322100                       00000000   112446789999999999999999997


Q ss_pred             HH
Q psy12099        161 DI  162 (174)
Q Consensus       161 ~~  162 (174)
                      ..
T Consensus       188 ~~  189 (190)
T cd00879         188 QY  189 (190)
T ss_pred             hh
Confidence            64

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.75  E-value=8.1e-18  Score=126.04  Aligned_cols=119  Identities=19%  Similarity=0.266  Sum_probs=89.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|+++++.+|.+||++++++|||+|+          ++..++.++..++..+++.....++|++|++||+|+....
T Consensus        65 ~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~----------~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~  134 (184)
T smart00178       65 TFDLGGHQQARRLWKDYFPEVNGIVYLVDA----------YDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA  134 (184)
T ss_pred             EEECCCCHHHHHHHHHHhCCCCEEEEEEEC----------CcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC
Confidence            599999999999999999999999999999          7888999999999998876666789999999999986421


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                       .  ...+.+.+.-...  ....                         ..   ...+.+.++.+||+++.|+.++++++.
T Consensus       135 -~--~~~i~~~l~l~~~--~~~~-------------------------~~---~~~~~~~i~~~Sa~~~~g~~~~~~wl~  181 (184)
T smart00178      135 -S--EDELRYALGLTNT--TGSK-------------------------GK---VGVRPLEVFMCSVVRRMGYGEGFKWLS  181 (184)
T ss_pred             -C--HHHHHHHcCCCcc--cccc-------------------------cc---cCCceeEEEEeecccCCChHHHHHHHH
Confidence             1  1223322221110  0000                         00   123567899999999999999999997


Q ss_pred             HH
Q psy12099        161 DI  162 (174)
Q Consensus       161 ~~  162 (174)
                      +.
T Consensus       182 ~~  183 (184)
T smart00178      182 QY  183 (184)
T ss_pred             hh
Confidence            64

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01866 Rab2 Rab2 subfamily

Probab=99.75  E-value=9e-18  Score=123.66  Aligned_cols=111  Identities=15%  Similarity=0.183  Sum_probs=88.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||++|+++++.++..|+++++++|+|+|+          ++.+++.....|+..+.... .+++|++|++||.|+..+.
T Consensus        57 i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~  125 (168)
T cd01866          57 IWDTAGQESFRSITRSYYRGAAGALLVYDI----------TRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRR  125 (168)
T ss_pred             EEECCCcHHHHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECccccccc
Confidence            699999999999999999999999999999          78999999999998886543 3578999999999986432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..             ...+.+.++||+++.||.++|.++.
T Consensus       126 ~~------------------------------~~~~~~~~~~-------------~~~~~~~e~Sa~~~~~i~~~~~~~~  162 (168)
T cd01866         126 EV------------------------------SYEEGEAFAK-------------EHGLIFMETSAKTASNVEEAFINTA  162 (168)
T ss_pred             CC------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11                              1222333321             1235678999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.+++
T Consensus       163 ~~~~~  167 (168)
T cd01866         163 KEIYE  167 (168)
T ss_pred             HHHHh
Confidence            88764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PLN03110 Rab GTPase; Provisional

Probab=99.74  E-value=1.3e-17  Score=128.11  Aligned_cols=112  Identities=14%  Similarity=0.142  Sum_probs=88.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||++++.+|..|+++++++|+|+|+          ++..+++....|+..+.+. ...++|++|++||+|+...+
T Consensus        65 l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~  133 (216)
T PLN03110         65 IWDTAGQERYRAITSAYYRGAVGALLVYDI----------TKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLR  133 (216)
T ss_pred             EEECCCcHHHHHHHHHHhCCCCEEEEEEEC----------CChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhccccc
Confidence            699999999999999999999999999999          8899999988898887654 23578999999999985432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.+..+..             ...+.+++|||+++.||.++|+.+.
T Consensus       134 ~~------------------------------~~~~~~~l~~-------------~~~~~~~e~SA~~g~~v~~lf~~l~  170 (216)
T PLN03110        134 SV------------------------------AEEDGQALAE-------------KEGLSFLETSALEATNVEKAFQTIL  170 (216)
T ss_pred             CC------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11                              0111222210             1236788999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.+.
T Consensus       171 ~~i~~~  176 (216)
T PLN03110        171 LEIYHI  176 (216)
T ss_pred             HHHHHH
Confidence            888764

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.74  E-value=1.1e-17  Score=122.48  Aligned_cols=113  Identities=23%  Similarity=0.420  Sum_probs=87.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||+.++.+|..++++++++|+|+|.          ++.+++.....++..+++.....+.|++|++||+|+....
T Consensus        54 l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~----------~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~  123 (167)
T cd04160          54 FWDLGGQESLRSLWDKYYAECHAIIYVIDS----------TDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL  123 (167)
T ss_pred             EEECCCChhhHHHHHHHhCCCCEEEEEEEC----------chHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC
Confidence            699999999999999999999999999999          6777889999999998887666789999999999986531


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                       .  ...+.+++..+..                             .      .....+.++.+||+++.|++++|+++.
T Consensus       124 -~--~~~~~~~~~~~~~-----------------------------~------~~~~~~~~~~~Sa~~g~gv~e~~~~l~  165 (167)
T cd04160         124 -S--VEEIKEVFQDKAE-----------------------------E------IGRRDCLVLPVSALEGTGVREGIEWLV  165 (167)
T ss_pred             -C--HHHHHHHhccccc-----------------------------c------ccCCceEEEEeeCCCCcCHHHHHHHHh
Confidence             1  1122222222110                             0      112346788999999999999999987


Q ss_pred             H
Q psy12099        161 D  161 (174)
Q Consensus       161 ~  161 (174)
                      +
T Consensus       166 ~  166 (167)
T cd04160         166 E  166 (167)
T ss_pred             c
Confidence            5

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04125 RabA_like RabA-like subfamily

Probab=99.74  E-value=1.7e-17  Score=124.40  Aligned_cols=112  Identities=19%  Similarity=0.139  Sum_probs=88.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++.+|..++++++++|+|||+          ++..++.....|+..+.... ..+.|+++++||+|+.+.+
T Consensus        53 i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~----------~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~  121 (188)
T cd04125          53 IWDTNGQERFRSLNNSYYRGAHGYLLVYDV----------TDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNK  121 (188)
T ss_pred             EEECCCcHHHHhhHHHHccCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccc
Confidence            699999999999999999999999999999          88999999999888876542 3458999999999987432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.+..+..             ...+.++++||+++.||+++|.++.
T Consensus       122 ~v------------------------------~~~~~~~~~~-------------~~~~~~~evSa~~~~~i~~~f~~l~  158 (188)
T cd04125         122 VV------------------------------DSNIAKSFCD-------------SLNIPFFETSAKQSINVEEAFILLV  158 (188)
T ss_pred             cC------------------------------CHHHHHHHHH-------------HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            11                              0122333311             1234678999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.++++
T Consensus       159 ~~~~~~  164 (188)
T cd04125         159 KLIIKR  164 (188)
T ss_pred             HHHHHH
Confidence            998764

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0072|consensus

Probab=99.74  E-value=7.6e-18  Score=119.26  Aligned_cols=116  Identities=20%  Similarity=0.274  Sum_probs=95.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||++||.+.|..|..||.+.+++|||+|.          ++..++..+...+-.+++++.+.+..+++++||+|.....
T Consensus        66 vwdLggqtSirPyWRcYy~dt~avIyVVDs----------sd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~  135 (182)
T KOG0072|consen   66 VWDLGGQTSIRPYWRCYYADTDAVIYVVDS----------SDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL  135 (182)
T ss_pred             eeEccCcccccHHHHHHhcccceEEEEEec----------cchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh
Confidence            799999999999999999999999999999          7899999999999999999999999999999999997765


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  .                              ++...     ..+..   -+++.+.++.+||..|++++.+++|+.
T Consensus       136 t~--~------------------------------E~~~~-----L~l~~---Lk~r~~~Iv~tSA~kg~Gld~~~DWL~  175 (182)
T KOG0072|consen  136 TR--S------------------------------EVLKM-----LGLQK---LKDRIWQIVKTSAVKGEGLDPAMDWLQ  175 (182)
T ss_pred             hH--H------------------------------HHHHH-----hChHH---HhhheeEEEeeccccccCCcHHHHHHH
Confidence            43  1                              01100     00100   124568899999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+..+
T Consensus       176 ~~l~~~  181 (182)
T KOG0072|consen  176 RPLKSR  181 (182)
T ss_pred             HHHhcc
Confidence            988653

>cd04177 RSR1 RSR1 subgroup

Probab=99.73  E-value=1.6e-17  Score=122.25  Aligned_cols=112  Identities=16%  Similarity=0.099  Sum_probs=87.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++|+.+|..++++++++|+|+|+          ++.++++....|...+.+.....+.|+++++||.|+...+
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~----------~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~  122 (168)
T cd04177          53 ILDTAGTEQFTAMRELYIKSGQGFLLVYSV----------TSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDR  122 (168)
T ss_pred             EEeCCCcccchhhhHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccC
Confidence            699999999999999999999999999999          8899999998888888765445679999999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.+.++. ++           .+.+.++++||+.+.||.++|+++.
T Consensus       123 ~~------------------------------~~~~~~~~~-~~-----------~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177         123 QV------------------------------SREDGVSLS-QQ-----------WGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             cc------------------------------CHHHHHHHH-HH-----------cCCceEEEeeCCCCCCHHHHHHHHH
Confidence            11                              011122221 11           1225577999999999999999999


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.++
T Consensus       161 ~~~~  164 (168)
T cd04177         161 RQII  164 (168)
T ss_pred             HHHh
Confidence            8775

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.73  E-value=2.7e-17  Score=128.90  Aligned_cols=111  Identities=14%  Similarity=0.105  Sum_probs=86.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC--------CCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR--------WLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~--------~~~~~~iilv~N   72 (174)
                      ||||+|++.|+.++..|+.+++++|+|||+          ++.++|++...|++.+....        ...+.|++|++|
T Consensus        52 I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv----------~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgN  121 (247)
T cd04143          52 ILDTSGNHPFPAMRRLSILTGDVFILVFSL----------DNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGN  121 (247)
T ss_pred             EEECCCChhhhHHHHHHhccCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEE
Confidence            699999999999999999999999999999          89999999999999886542        235789999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI  152 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i  152 (174)
                      |+|+..++..                              ..+++.+++..            ...+.++++||+++.||
T Consensus       122 K~Dl~~~~~v------------------------------~~~ei~~~~~~------------~~~~~~~evSAktg~gI  159 (247)
T cd04143         122 KADRDFPREV------------------------------QRDEVEQLVGG------------DENCAYFEVSAKKNSNL  159 (247)
T ss_pred             Cccchhcccc------------------------------CHHHHHHHHHh------------cCCCEEEEEeCCCCCCH
Confidence            9999652211                              11223333211            12356789999999999


Q ss_pred             HHHHHHHHHHH
Q psy12099        153 RRVFNDCRDII  163 (174)
Q Consensus       153 ~~~f~~~~~~i  163 (174)
                      +++|+++....
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01868 Rab11_like Rab11-like

Probab=99.73  E-value=1.7e-17  Score=121.31  Aligned_cols=109  Identities=20%  Similarity=0.206  Sum_probs=85.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|+++++.+|..++++++++|+|+|+          ++.+++.....|+..+.+.. ..+.|++|++||+|+...+
T Consensus        56 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~  124 (165)
T cd01868          56 IWDTAGQERYRAITSAYYRGAVGALLVYDI----------TKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLR  124 (165)
T ss_pred             EEeCCChHHHHHHHHHHHCCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccc
Confidence            699999999999999999999999999999          78899999999988876553 3468999999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..++..++..             ...+.++++||+++.||+++|+++.
T Consensus       125 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868         125 AV------------------------------PTEEAKAFAE-------------KNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             cC------------------------------CHHHHHHHHH-------------HcCCEEEEEECCCCCCHHHHHHHHH
Confidence            11                              1122223211             1235678999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PLN03108 Rab family protein; Provisional

Probab=99.73  E-value=3e-17  Score=125.56  Aligned_cols=113  Identities=14%  Similarity=0.177  Sum_probs=89.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..++++++++|+|+|+          ++..++.....|+..+.... ..+.|+++++||+|+...+
T Consensus        59 l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~----------~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~  127 (210)
T PLN03108         59 IWDTAGQESFRSITRSYYRGAAGALLVYDI----------TRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRR  127 (210)
T ss_pred             EEeCCCcHHHHHHHHHHhccCCEEEEEEEC----------CcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCcccc
Confidence            699999999999999999999999999999          88999999888888875543 3578999999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.++..             ...+.++++||+++.||.++|.++.
T Consensus       128 ~~------------------------------~~~~~~~~~~-------------~~~~~~~e~Sa~~~~~v~e~f~~l~  164 (210)
T PLN03108        128 AV------------------------------STEEGEQFAK-------------EHGLIFMEASAKTAQNVEEAFIKTA  164 (210)
T ss_pred             CC------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11                              1222333321             1235688999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.++++.
T Consensus       165 ~~~~~~~  171 (210)
T PLN03108        165 AKIYKKI  171 (210)
T ss_pred             HHHHHHh
Confidence            9988653

>cd01864 Rab19 Rab19 subfamily

Probab=99.73  E-value=3.6e-17  Score=119.83  Aligned_cols=109  Identities=14%  Similarity=0.128  Sum_probs=85.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||++++..|..++++++++|+|+|+          ++..++.....|+..+.... ..++|+++|+||+|+...+
T Consensus        56 i~D~~G~~~~~~~~~~~~~~~d~~llv~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~  124 (165)
T cd01864          56 IWDTAGQERFRTITQSYYRSANGAIIAYDI----------TRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQR  124 (165)
T ss_pred             EEECCChHHHHHHHHHHhccCCEEEEEEEC----------cCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECccccccc
Confidence            699999999999999999999999999999          88999999889988886542 3578999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.+..+...            .+...+.++||+++.|++++|+++.
T Consensus       125 ~~------------------------------~~~~~~~~~~~------------~~~~~~~e~Sa~~~~~v~~~~~~l~  162 (165)
T cd01864         125 EV------------------------------LFEEACTLAEK------------NGMLAVLETSAKESQNVEEAFLLMA  162 (165)
T ss_pred             cc------------------------------CHHHHHHHHHH------------cCCcEEEEEECCCCCCHHHHHHHHH
Confidence            11                              11222222110            1224678999999999999999988


Q ss_pred             HH
Q psy12099        161 DI  162 (174)
Q Consensus       161 ~~  162 (174)
                      +.
T Consensus       163 ~~  164 (165)
T cd01864         163 TE  164 (165)
T ss_pred             Hh
Confidence            64

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.72  E-value=2.3e-17  Score=120.13  Aligned_cols=107  Identities=17%  Similarity=0.164  Sum_probs=83.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||++++.+|..|+++++++++|+|+          ++.+++.....|...+...  ..++|+++++||+|+..+.
T Consensus        55 i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~----------~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~  122 (162)
T cd04106          55 LWDTAGQEEFDAITKAYYRGAQACILVFST----------TDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQA  122 (162)
T ss_pred             EeeCCchHHHHHhHHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhccccc
Confidence            699999999999999999999999999999          7888999888888877543  3578999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..             ...+.++++||+++.|++++|+++.
T Consensus       123 ~v------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106         123 VI------------------------------TNEEAEALAK-------------RLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             CC------------------------------CHHHHHHHHH-------------HcCCeEEEEECCCCCCHHHHHHHHH
Confidence            11                              0122333321             1224678999999999999999987


Q ss_pred             HH
Q psy12099        161 DI  162 (174)
Q Consensus       161 ~~  162 (174)
                      ..
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            53

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04113 Rab4 Rab4 subfamily

Probab=99.72  E-value=2.4e-17  Score=120.10  Aligned_cols=109  Identities=20%  Similarity=0.224  Sum_probs=86.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++||++++..|.+++++++++|+|+|+          ++..++.....|+..+... ...++|++|++||.|+..+.
T Consensus        53 l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~  121 (161)
T cd04113          53 IWDTAGQERFRSVTRSYYRGAAGALLVYDI----------TNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQR  121 (161)
T ss_pred             EEECcchHHHHHhHHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhc
Confidence            699999999999999999999999999999          8899999998988876443 23578999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..             ...+.++++||+++.|+.++|+++.
T Consensus       122 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~i~~~~~~~~  158 (161)
T cd04113         122 EV------------------------------TFLEASRFAQ-------------ENGLLFLETSALTGENVEEAFLKCA  158 (161)
T ss_pred             cC------------------------------CHHHHHHHHH-------------HcCCEEEEEECCCCCCHHHHHHHHH
Confidence            11                              1222333321             1226788999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       159 ~~~  161 (161)
T cd04113         159 RSI  161 (161)
T ss_pred             HhC
Confidence            753

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PLN03118 Rab family protein; Provisional

Probab=99.72  E-value=4e-17  Score=124.72  Aligned_cols=113  Identities=18%  Similarity=0.168  Sum_probs=86.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC-CCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN-RWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~-~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+||++++.+|..|+++++++|+|+|+          ++.+++.....+|...+.. ....+.|++|++||+|+..+
T Consensus        66 l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~----------~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~  135 (211)
T PLN03118         66 IWDTAGQERFRTLTSSYYRNAQGIILVYDV----------TRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESE  135 (211)
T ss_pred             EEECCCchhhHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            699999999999999999999999999999          7899999887766554432 23456899999999998653


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      +..                              ..+++..+..             ...+.++++||+++.||+++|+++
T Consensus       136 ~~i------------------------------~~~~~~~~~~-------------~~~~~~~e~SAk~~~~v~~l~~~l  172 (211)
T PLN03118        136 RDV------------------------------SREEGMALAK-------------EHGCLFLECSAKTRENVEQCFEEL  172 (211)
T ss_pred             Ccc------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHH
Confidence            211                              0111222211             123567899999999999999999


Q ss_pred             HHHHHHh
Q psy12099        160 RDIIQRM  166 (174)
Q Consensus       160 ~~~i~~~  166 (174)
                      .+.+...
T Consensus       173 ~~~~~~~  179 (211)
T PLN03118        173 ALKIMEV  179 (211)
T ss_pred             HHHHHhh
Confidence            9988754

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.72  E-value=4e-17  Score=118.97  Aligned_cols=109  Identities=19%  Similarity=0.215  Sum_probs=87.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||++|+++++..|..++++++++|+|+|.          ++.+++.....|+..+..... .++|+++++||+|+...+
T Consensus        54 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~  122 (163)
T cd01860          54 IWDTAGQERYRSLAPMYYRGAAAAIVVYDI----------TSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKR  122 (163)
T ss_pred             EEeCCchHHHHHHHHHHhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccC
Confidence            699999999999999999999999999999          789999999999998876543 678999999999986432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+...             ..+.++++||+++.|+.++|+++.
T Consensus       123 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd01860         123 QV------------------------------STEEAQEYADE-------------NGLLFFETSAKTGENVNELFTEIA  159 (163)
T ss_pred             cC------------------------------CHHHHHHHHHH-------------cCCEEEEEECCCCCCHHHHHHHHH
Confidence            11                              11222222211             125688999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.|
T Consensus       160 ~~l  162 (163)
T cd01860         160 KKL  162 (163)
T ss_pred             HHh
Confidence            875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04118 Rab24 Rab24 subfamily

Probab=99.71  E-value=5.7e-17  Score=121.81  Aligned_cols=115  Identities=12%  Similarity=0.102  Sum_probs=87.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|+++++.+|..||++++++|+|+|+          ++.++++....|+..+.+.  ..+.|++||+||+|+....
T Consensus        54 i~D~~G~~~~~~~~~~~~~~~d~iilv~d~----------~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~  121 (193)
T cd04118          54 IWDTAGSERYEAMSRIYYRGAKAAIVCYDL----------TDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQD  121 (193)
T ss_pred             EEECCCchhhhhhhHhhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccc
Confidence            699999999999999999999999999999          8899999888888887654  2478999999999985421


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  ...+                        ..+++.+|..             ...+.++++||+++.||.++|+++.
T Consensus       122 ~~--~~~v------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gv~~l~~~i~  162 (193)
T cd04118         122 RS--LRQV------------------------DFHDVQDFAD-------------EIKAQHFETSSKTGQNVDELFQKVA  162 (193)
T ss_pred             cc--cCcc------------------------CHHHHHHHHH-------------HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            00  0000                        1122333321             1124567999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.++++
T Consensus       163 ~~~~~~  168 (193)
T cd04118         163 EDFVSR  168 (193)
T ss_pred             HHHHHh
Confidence            988765

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.71  E-value=5.7e-17  Score=118.34  Aligned_cols=108  Identities=15%  Similarity=0.146  Sum_probs=83.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++.++.+|.+++++++++|+|+|+          ++.+++.+...|+..+....  .+.|+++++||+|+..+.
T Consensus        56 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~  123 (164)
T cd04101          56 IFDSAGQELYSDMVSNYWESPSVFILVYDV----------SNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKA  123 (164)
T ss_pred             EEECCCHHHHHHHHHHHhCCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccccccc
Confidence            699999999999999999999999999999          78899988888888876542  568999999999985432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..    .                          ...+..+. .            ...+.++++||+++.|+.++|+.+.
T Consensus       124 ~~----~--------------------------~~~~~~~~-~------------~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (164)
T cd04101         124 EV----T--------------------------DAQAQAFA-Q------------ANQLKFFKTSALRGVGYEEPFESLA  160 (164)
T ss_pred             CC----C--------------------------HHHHHHHH-H------------HcCCeEEEEeCCCCCChHHHHHHHH
Confidence            11    0                          01111111 0            1124577999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04101         161 RAF  163 (164)
T ss_pred             HHh
Confidence            765

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04135 Tc10 TC10 subfamily

Probab=99.70  E-value=9.7e-17  Score=118.30  Aligned_cols=121  Identities=13%  Similarity=0.177  Sum_probs=85.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|++.++.+|..++++++++|+|+|+          ++..+++.... |...+...  ..+.|+++++||+|+..+
T Consensus        52 i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~----------~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~  119 (174)
T cd04135          52 LYDTAGQEDYDRLRPLSYPMTDVFLICFSV----------VNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDD  119 (174)
T ss_pred             EEeCCCcccccccccccCCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcC
Confidence            699999999999999999999999999999          88999988864 55554332  467999999999998654


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...  ...+...    ..            ..-..+++..+...            .....++++||+++.||+++|+.+
T Consensus       120 ~~~--~~~~~~~----~~------------~~v~~~~~~~~~~~------------~~~~~~~e~Sa~~~~gi~~~f~~~  169 (174)
T cd04135         120 PKT--LARLNDM----KE------------KPVTVEQGQKLAKE------------IGAHCYVECSALTQKGLKTVFDEA  169 (174)
T ss_pred             hhh--HHHHhhc----cC------------CCCCHHHHHHHHHH------------cCCCEEEEecCCcCCCHHHHHHHH
Confidence            321  1111111    00            00123344444211            111356799999999999999999


Q ss_pred             HHHH
Q psy12099        160 RDII  163 (174)
Q Consensus       160 ~~~i  163 (174)
                      .+.+
T Consensus       170 ~~~~  173 (174)
T cd04135         170 ILAI  173 (174)
T ss_pred             HHHh
Confidence            8876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.70  E-value=1.2e-16  Score=116.05  Aligned_cols=111  Identities=23%  Similarity=0.347  Sum_probs=86.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++..|..++++++++++|+|+          ++..++.....++..+.......+.|+++++||+|+....
T Consensus        47 i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~----------~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~  116 (158)
T cd00878          47 VWDVGGQDKIRPLWKHYYENTNGIIFVVDS----------SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL  116 (158)
T ss_pred             EEECCCChhhHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence            699999999999999999999999999999          7888999999999998876556689999999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..   ..+.+.                             +     ....   ...+.+.++++||+++.|+.++|+++.
T Consensus       117 ~~---~~~~~~-----------------------------~-----~~~~---~~~~~~~~~~~Sa~~~~gv~~~~~~l~  156 (158)
T cd00878         117 SV---SELIEK-----------------------------L-----GLEK---ILGRRWHIQPCSAVTGDGLDEGLDWLL  156 (158)
T ss_pred             CH---HHHHHh-----------------------------h-----Chhh---ccCCcEEEEEeeCCCCCCHHHHHHHHh
Confidence            00   011110                             0     0000   123457788999999999999999986


Q ss_pred             H
Q psy12099        161 D  161 (174)
Q Consensus       161 ~  161 (174)
                      +
T Consensus       157 ~  157 (158)
T cd00878         157 Q  157 (158)
T ss_pred             h
Confidence            4

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01863 Rab18 Rab18 subfamily

Probab=99.70  E-value=8.1e-17  Score=117.22  Aligned_cols=108  Identities=18%  Similarity=0.181  Sum_probs=86.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.+...|..++++++++|+|+|+          ++.+++.....|+..+.+.....+.|+++++||+|+....
T Consensus        53 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~  122 (161)
T cd01863          53 IWDTAGQERFRTLTSSYYRGAQGVILVYDV----------TRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENRE  122 (161)
T ss_pred             EEECCCchhhhhhhHHHhCCCCEEEEEEEC----------CCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccc
Confidence            699999999999999999999999999999          8899999988888888776656789999999999997322


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                               .+++..+..             ...+.+.++||+++.|++++|+++.
T Consensus       123 ~~-------------------------------~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~~~~~~~  158 (161)
T cd01863         123 VT-------------------------------REEGLKFAR-------------KHNMLFIETSAKTRDGVQQAFEELV  158 (161)
T ss_pred             cC-------------------------------HHHHHHHHH-------------HcCCEEEEEecCCCCCHHHHHHHHH
Confidence            11                               122223321             1236788999999999999999987


Q ss_pred             HH
Q psy12099        161 DI  162 (174)
Q Consensus       161 ~~  162 (174)
                      +.
T Consensus       159 ~~  160 (161)
T cd01863         159 EK  160 (161)
T ss_pred             Hh
Confidence            64

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.70  E-value=1.3e-16  Score=116.87  Aligned_cols=111  Identities=19%  Similarity=0.234  Sum_probs=82.7

Q ss_pred             CeeCCCCchh-hhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC-CCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDE-RRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW-LRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~-r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~-~~~~~iilv~NK~Dl~~   78 (174)
                      |||++|++++ ...+..++++++++|+|+|+          ++.++++....|+..+..... ..+.|+++|+||+|+..
T Consensus        51 i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  120 (165)
T cd04146          51 ILDTAGQQQADTEQLERSIRWADGFVLVYSI----------TDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH  120 (165)
T ss_pred             EEECCCCcccccchHHHHHHhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence            6999999963 56788899999999999999          889999988888777655332 35799999999999864


Q ss_pred             HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc-hhHHHHHH
Q psy12099         79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT-ENIRRVFN  157 (174)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~-~~i~~~f~  157 (174)
                      .+..                              ..+++..+..             .....++++||+++ .||+++|.
T Consensus       121 ~~~v------------------------------~~~~~~~~~~-------------~~~~~~~e~Sa~~~~~~v~~~f~  157 (165)
T cd04146         121 YRQV------------------------------STEEGEKLAS-------------ELGCLFFEVSAAEDYDGVHSVFH  157 (165)
T ss_pred             hCcc------------------------------CHHHHHHHHH-------------HcCCEEEEeCCCCCchhHHHHHH
Confidence            3211                              0122333311             11245779999999 59999999


Q ss_pred             HHHHHHH
Q psy12099        158 DCRDIIQ  164 (174)
Q Consensus       158 ~~~~~i~  164 (174)
                      .+.+.+.
T Consensus       158 ~l~~~~~  164 (165)
T cd04146         158 ELCREVR  164 (165)
T ss_pred             HHHHHHh
Confidence            9988664

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.69  E-value=7.6e-17  Score=119.25  Aligned_cols=118  Identities=16%  Similarity=0.187  Sum_probs=82.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+||++++.+|..|+++++++|+|||+          +++.+++... .|+..+...  ..+.|+++++||+|+...
T Consensus        52 i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~----------~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~  119 (173)
T cd04130          52 LCDTAGQDEFDKLRPLCYPDTDVFLLCFSV----------VNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTD  119 (173)
T ss_pred             EEECCCChhhccccccccCCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccC
Confidence            699999999999999999999999999999          8999999875 566666542  346899999999998643


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      .-     .+..+......             .-..+++..+...            .....++++||+++.||+++|+.+
T Consensus       120 ~~-----~~~~~~~~~~~-------------~v~~~~~~~~a~~------------~~~~~~~e~Sa~~~~~v~~lf~~~  169 (173)
T cd04130         120 VN-----VLIQLARYGEK-------------PVSQSRAKALAEK------------IGACEYIECSALTQKNLKEVFDTA  169 (173)
T ss_pred             hh-----HHHHHhhcCCC-------------CcCHHHHHHHHHH------------hCCCeEEEEeCCCCCCHHHHHHHH
Confidence            21     01111111000             0123445554321            112367899999999999999876


Q ss_pred             H
Q psy12099        160 R  160 (174)
Q Consensus       160 ~  160 (174)
                      .
T Consensus       170 ~  170 (173)
T cd04130         170 I  170 (173)
T ss_pred             H
Confidence            4

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.69  E-value=1.7e-16  Score=115.39  Aligned_cols=112  Identities=17%  Similarity=0.150  Sum_probs=87.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++||+.+...+..++++++++++|+|+          ++..++.....|+..+.......+.|+++++||+|+..+.
T Consensus        52 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  121 (164)
T cd04139          52 ILDTAGQEDYAAIRDNYHRSGEGFLLVFSI----------TDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKR  121 (164)
T ss_pred             EEECCChhhhhHHHHHHhhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccc
Confidence            699999999999999999999999999999          7888999999999988876445679999999999987521


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..    .                          .+....+..             ...+.++++||+++.|+.++|+++.
T Consensus       122 ~~----~--------------------------~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (164)
T cd04139         122 QV----S--------------------------SEEAANLAR-------------QWGVPYVETSAKTRQNVEKAFYDLV  158 (164)
T ss_pred             cc----C--------------------------HHHHHHHHH-------------HhCCeEEEeeCCCCCCHHHHHHHHH
Confidence            11    0                          111111111             0124578999999999999999998


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.+.+
T Consensus       159 ~~~~~  163 (164)
T cd04139         159 REIRQ  163 (164)
T ss_pred             HHHHh
Confidence            87753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01862 Rab7 Rab7 subfamily

Probab=99.69  E-value=1.8e-16  Score=116.33  Aligned_cols=114  Identities=11%  Similarity=0.108  Sum_probs=87.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC---CCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW---LRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~---~~~~~iilv~NK~Dl~   77 (174)
                      +||++|++.+..+|..++++++++|+|+|+          .+..++.+...|...++....   ..++|+++++||+|+.
T Consensus        53 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  122 (172)
T cd01862          53 IWDTAGQERFQSLGVAFYRGADCCVLVYDV----------TNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE  122 (172)
T ss_pred             EEeCCChHHHHhHHHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence            699999999999999999999999999999          788888888788777655422   3478999999999997


Q ss_pred             hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099         78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN  157 (174)
Q Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~  157 (174)
                      .++..    .                          .+....+...            ...+.++++||+++.|++++|+
T Consensus       123 ~~~~~----~--------------------------~~~~~~~~~~------------~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862         123 EKRQV----S--------------------------TKKAQQWCQS------------NGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ccccc----C--------------------------HHHHHHHHHH------------cCCceEEEEECCCCCCHHHHHH
Confidence            42211    0                          1112222111            1235678999999999999999


Q ss_pred             HHHHHHHHh
Q psy12099        158 DCRDIIQRM  166 (174)
Q Consensus       158 ~~~~~i~~~  166 (174)
                      ++.+.++++
T Consensus       161 ~i~~~~~~~  169 (172)
T cd01862         161 TIARKALEQ  169 (172)
T ss_pred             HHHHHHHhc
Confidence            999988765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01861 Rab6 Rab6 subfamily

Probab=99.69  E-value=1.2e-16  Score=116.17  Aligned_cols=108  Identities=15%  Similarity=0.183  Sum_probs=84.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..++++++++|+|+|+          ++++++.....|+..+.... ..+.|+++++||.|+....
T Consensus        53 ~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~  121 (161)
T cd01861          53 LWDTAGQERFRSLIPSYIRDSSVAVVVYDI----------TNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKR  121 (161)
T ss_pred             EEECCCcHHHHHHHHHHhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccC
Confidence            699999999999999999999999999999          88999999999999876543 2479999999999985322


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..    .                          .+++..+..             ...+.+.++||+++.|++++|+++.
T Consensus       122 ~~----~--------------------------~~~~~~~~~-------------~~~~~~~~~Sa~~~~~v~~l~~~i~  158 (161)
T cd01861         122 QV----S--------------------------TEEGEKKAK-------------ELNAMFIETSAKAGHNVKELFRKIA  158 (161)
T ss_pred             cc----C--------------------------HHHHHHHHH-------------HhCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11    1                          112222211             1225678999999999999999997


Q ss_pred             HH
Q psy12099        161 DI  162 (174)
Q Consensus       161 ~~  162 (174)
                      +.
T Consensus       159 ~~  160 (161)
T cd01861         159 SA  160 (161)
T ss_pred             Hh
Confidence            64

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.69  E-value=1.8e-16  Score=115.33  Aligned_cols=111  Identities=17%  Similarity=0.192  Sum_probs=87.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++++...+..++++++++|+|+|+          ++..+++....|+..+..... .++|+++++||+|+....
T Consensus        53 l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~~~~  121 (164)
T smart00175       53 IWDTAGQERFRSITSSYYRGAVGALLVYDI----------TNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLEDQR  121 (164)
T ss_pred             EEECCChHHHHHHHHHHhCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhccccc
Confidence            699999999999999999999999999999          889999998888888766532 579999999999975421


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              +.+.+.++..             ...+.++++||+++.|++++|+++.
T Consensus       122 ~~------------------------------~~~~~~~~~~-------------~~~~~~~e~Sa~~~~~i~~l~~~i~  158 (164)
T smart00175      122 QV------------------------------SREEAEAFAE-------------EHGLPFFETSAKTNTNVEEAFEELA  158 (164)
T ss_pred             CC------------------------------CHHHHHHHHH-------------HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            10                              1222333321             1225578999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.++.
T Consensus       159 ~~~~~  163 (164)
T smart00175      159 REILK  163 (164)
T ss_pred             HHHhh
Confidence            88764

Rab GTPases are implicated in vesicle trafficking.

>cd04123 Rab21 Rab21 subfamily

Probab=99.68  E-value=1.4e-16  Score=115.55  Aligned_cols=109  Identities=18%  Similarity=0.190  Sum_probs=83.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++.+|..++++++++|+|+|+          ++.+++.....|+..+..... .+.|+++++||+|+...+
T Consensus        53 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~  121 (162)
T cd04123          53 IWDTAGQERYHALGPIYYRDADGAILVYDI----------TDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQR  121 (162)
T ss_pred             EEECCchHHHHHhhHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccc
Confidence            699999999999999999999999999999          788899888888887755432 378999999999987432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..    .                          .+....+..             .....++++||+++.++.++|+++.
T Consensus       122 ~~----~--------------------------~~~~~~~~~-------------~~~~~~~~~s~~~~~gi~~~~~~l~  158 (162)
T cd04123         122 VV----S--------------------------KSEAEEYAK-------------SVGAKHFETSAKTGKGIEELFLSLA  158 (162)
T ss_pred             CC----C--------------------------HHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            10    0                          011112211             1124567999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       159 ~~~  161 (162)
T cd04123         159 KRM  161 (162)
T ss_pred             HHh
Confidence            765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>KOG0074|consensus

Probab=99.68  E-value=3.1e-17  Score=115.89  Aligned_cols=111  Identities=23%  Similarity=0.348  Sum_probs=89.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||+|||+..|..|..||.+++++|||+|.          ++..+|++.-+.+.+++........|++|++||+|+..+.
T Consensus        66 vwDiGGqr~IRpyWsNYyenvd~lIyVIDS----------~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa  135 (185)
T KOG0074|consen   66 VWDIGGQRGIRPYWSNYYENVDGLIYVIDS----------TDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA  135 (185)
T ss_pred             EEecCCccccchhhhhhhhccceEEEEEeC----------CchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc
Confidence            799999999999999999999999999998          8999999999989998888888899999999999998754


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      -.      +..                         |.+.      +++.   -..|.++++++||+.++++....+++.
T Consensus       136 ~~------eei-------------------------a~kl------nl~~---lrdRswhIq~csals~eg~~dg~~wv~  175 (185)
T KOG0074|consen  136 KV------EEI-------------------------ALKL------NLAG---LRDRSWHIQECSALSLEGSTDGSDWVQ  175 (185)
T ss_pred             ch------HHH-------------------------HHhc------chhh---hhhceEEeeeCccccccCccCcchhhh
Confidence            22      110                         1000      1111   345779999999999999888877765


Q ss_pred             H
Q psy12099        161 D  161 (174)
Q Consensus       161 ~  161 (174)
                      .
T Consensus       176 s  176 (185)
T KOG0074|consen  176 S  176 (185)
T ss_pred             c
Confidence            3

>cd01892 Miro2 Miro2 subfamily

Probab=99.68  E-value=1.5e-16  Score=117.60  Aligned_cols=110  Identities=12%  Similarity=0.101  Sum_probs=81.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++.+|..||++++++|+|+|.          ++..+++....|+..+..   ..++|+++++||+|+..++
T Consensus        58 ~~d~~g~~~~~~~~~~~~~~~d~~llv~d~----------~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~  124 (169)
T cd01892          58 LREVGEDEVAILLNDAELAACDVACLVYDS----------SDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQ  124 (169)
T ss_pred             EEecCCcccccccchhhhhcCCEEEEEEeC----------CCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccc
Confidence            599999999999999999999999999999          788898888888876532   2378999999999986432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ... ...                             +..+. ++    .       ..-.++++||+++.|++++|+.+.
T Consensus       125 ~~~-~~~-----------------------------~~~~~-~~----~-------~~~~~~~~Sa~~~~~v~~lf~~l~  162 (169)
T cd01892         125 QRY-EVQ-----------------------------PDEFC-RK----L-------GLPPPLHFSSKLGDSSNELFTKLA  162 (169)
T ss_pred             ccc-ccC-----------------------------HHHHH-HH----c-------CCCCCEEEEeccCccHHHHHHHHH
Confidence            110 000                             11110 00    0       001246899999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.++.
T Consensus       163 ~~~~~  167 (169)
T cd01892         163 TAAQY  167 (169)
T ss_pred             HHhhC
Confidence            88764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01893 Miro1 Miro1 subfamily

Probab=99.68  E-value=3.8e-16  Score=114.75  Aligned_cols=114  Identities=17%  Similarity=0.135  Sum_probs=82.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+|++.++..|..++++++++|+|+|+          ++..+++.... |...+... . .+.|++|++||+|+...
T Consensus        51 i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~----------~~~~s~~~~~~~~~~~i~~~-~-~~~pviiv~nK~Dl~~~  118 (166)
T cd01893          51 IVDTSSRPQDRANLAAEIRKANVICLVYSV----------DRPSTLERIRTKWLPLIRRL-G-VKVPIILVGNKSDLRDG  118 (166)
T ss_pred             EEeCCCchhhhHHHhhhcccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh-C-CCCCEEEEEEchhcccc
Confidence            699999999999999999999999999999          88899988764 44444332 2 37899999999999654


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...   ..                          .++....+..+|..          ...+.+|||+++.|++++|+.+
T Consensus       119 ~~~---~~--------------------------~~~~~~~~~~~~~~----------~~~~~e~Sa~~~~~v~~lf~~~  159 (166)
T cd01893         119 SSQ---AG--------------------------LEEEMLPIMNEFRE----------IETCVECSAKTLINVSEVFYYA  159 (166)
T ss_pred             cch---hH--------------------------HHHHHHHHHHHHhc----------ccEEEEeccccccCHHHHHHHH
Confidence            321   00                          01111112222211          1246799999999999999999


Q ss_pred             HHHHHH
Q psy12099        160 RDIIQR  165 (174)
Q Consensus       160 ~~~i~~  165 (174)
                      .+.+++
T Consensus       160 ~~~~~~  165 (166)
T cd01893         160 QKAVLH  165 (166)
T ss_pred             HHHhcC
Confidence            988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04142 RRP22 RRP22 subfamily

Probab=99.67  E-value=5e-16  Score=117.88  Aligned_cols=114  Identities=14%  Similarity=0.076  Sum_probs=83.9

Q ss_pred             CeeCCCCchhh----h----hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC--CCCCCcEEEE
Q psy12099          1 MFDVGGQRDER----R----KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR--WLRTISVILF   70 (174)
Q Consensus         1 iwD~~Gq~~~r----~----~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~--~~~~~~iilv   70 (174)
                      ||||+|++.+.    .    ....++++++++|+|||+          ++..+++....|++.+.+..  ...++|++|+
T Consensus        53 i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~----------~~~~S~~~~~~~~~~i~~~~~~~~~~~piiiv  122 (198)
T cd04142          53 ILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDI----------CSPDSFHYVKLLRQQILETRPAGNKEPPIVVV  122 (198)
T ss_pred             EEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence            69999976532    1    234568999999999999          89999999999988887653  2467999999


Q ss_pred             EeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccch
Q psy12099         71 LNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTE  150 (174)
Q Consensus        71 ~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~  150 (174)
                      +||+|+...+..  .                            .+++..+..            +...+.+++|||++|.
T Consensus       123 gNK~Dl~~~~~~--~----------------------------~~~~~~~~~------------~~~~~~~~e~Sak~g~  160 (198)
T cd04142         123 GNKRDQQRHRFA--P----------------------------RHVLSVLVR------------KSWKCGYLECSAKYNW  160 (198)
T ss_pred             EECccccccccc--c----------------------------HHHHHHHHH------------HhcCCcEEEecCCCCC
Confidence            999999654321  0                            111222111            1123567899999999


Q ss_pred             hHHHHHHHHHHHHHHh
Q psy12099        151 NIRRVFNDCRDIIQRM  166 (174)
Q Consensus       151 ~i~~~f~~~~~~i~~~  166 (174)
                      ||+++|+.+.+.++.+
T Consensus       161 ~v~~lf~~i~~~~~~~  176 (198)
T cd04142         161 HILLLFKELLISATTR  176 (198)
T ss_pred             CHHHHHHHHHHHhhcc
Confidence            9999999999988765

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.66  E-value=4.7e-16  Score=117.73  Aligned_cols=113  Identities=19%  Similarity=0.158  Sum_probs=86.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++.+|..|+++++++|+|+|+          ++..++++...|+..+.......+.|++|++||+|+....
T Consensus        51 i~D~~G~~~~~~~~~~~~~~ad~vilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~  120 (198)
T cd04147          51 ILDTSGSYSFPAMRKLSIQNSDAFALVYAV----------DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEE  120 (198)
T ss_pred             EEECCCchhhhHHHHHHhhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccc
Confidence            699999999999999999999999999999          7899999999998888776555679999999999986421


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      -.   ..                          .+.+.+....            .....+.++||+++.||.++|+++.
T Consensus       121 ~~---v~--------------------------~~~~~~~~~~------------~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147         121 RQ---VP--------------------------AKDALSTVEL------------DWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             cc---cc--------------------------HHHHHHHHHh------------hcCCcEEEecCCCCCCHHHHHHHHH
Confidence            00   00                          1111111100            1123466899999999999999999


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.+.
T Consensus       160 ~~~~  163 (198)
T cd04147         160 RQAN  163 (198)
T ss_pred             HHhh
Confidence            8765

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0395|consensus

Probab=99.66  E-value=6.9e-16  Score=116.94  Aligned_cols=112  Identities=20%  Similarity=0.159  Sum_probs=93.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |+||+||+.+..+..+|++++++.++||++          +++.+|+++..+++.++..+....+|++|||||+|+...+
T Consensus        55 ilDt~g~~~~~~~~~~~~~~~~gF~lVysi----------td~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R  124 (196)
T KOG0395|consen   55 ILDTAGQEEFSAMRDLYIRNGDGFLLVYSI----------TDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERER  124 (196)
T ss_pred             EEcCCCcccChHHHHHhhccCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcc
Confidence            689999999999999999999999999999          9999999999999999777777789999999999998754


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..    +                          .+++..+             +..-.+.+.+|||+...||.++|..+.
T Consensus       125 ~V----~--------------------------~eeg~~l-------------a~~~~~~f~E~Sak~~~~v~~~F~~L~  161 (196)
T KOG0395|consen  125 QV----S--------------------------EEEGKAL-------------ARSWGCAFIETSAKLNYNVDEVFYELV  161 (196)
T ss_pred             cc----C--------------------------HHHHHHH-------------HHhcCCcEEEeeccCCcCHHHHHHHHH
Confidence            33    1                          2222322             011224578999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      ..+..
T Consensus       162 r~~~~  166 (196)
T KOG0395|consen  162 REIRL  166 (196)
T ss_pred             HHHHh
Confidence            98876

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.66  E-value=6.8e-16  Score=114.56  Aligned_cols=114  Identities=15%  Similarity=0.160  Sum_probs=89.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++..|..++.+++++|+|+|+          ++..+++....++..+++.....+.|++|++||+|+....
T Consensus        53 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~  122 (180)
T cd04137          53 IVDTAGQDEYSILPQKYSIGIHGYILVYSV----------TSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR  122 (180)
T ss_pred             EEECCChHhhHHHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC
Confidence            699999999999999999999999999999          7899999999999999887655678999999999986422


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..    .                          .++...+. +            .....+.++||+++.++.++|.++.
T Consensus       123 ~~----~--------------------------~~~~~~~~-~------------~~~~~~~~~Sa~~~~gv~~l~~~l~  159 (180)
T cd04137         123 QV----S--------------------------TEEGKELA-E------------SWGAAFLESSARENENVEEAFELLI  159 (180)
T ss_pred             cc----C--------------------------HHHHHHHH-H------------HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            11    0                          01111110 0            0124677899999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.+.+..
T Consensus       160 ~~~~~~~  166 (180)
T cd04137         160 EEIEKVE  166 (180)
T ss_pred             HHHHHhc
Confidence            9887653

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04148 RGK RGK subfamily

Probab=99.65  E-value=6.8e-16  Score=118.99  Aligned_cols=110  Identities=19%  Similarity=0.155  Sum_probs=81.1

Q ss_pred             CeeCCCCchhhhhHhhhhc-CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFN-DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~-~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|++  ......+++ +++++|+|||+          ++..++.....|+..+.+.....+.|++||+||+|+...
T Consensus        54 i~Dt~G~~--~~~~~~~~~~~ad~iilV~d~----------td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~  121 (221)
T cd04148          54 VIDHWEQE--MWTEDSCMQYQGDAFVVVYSV----------TDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARS  121 (221)
T ss_pred             EEeCCCcc--hHHHhHHhhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcccc
Confidence            69999999  334456677 99999999999          899999999999888876544568999999999998653


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...    .                          .+++.++..             ...+.+++|||+++.||+++|+++
T Consensus       122 ~~v----~--------------------------~~~~~~~a~-------------~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148         122 REV----S--------------------------VQEGRACAV-------------VFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             cee----c--------------------------HHHHHHHHH-------------HcCCeEEEecCCCCCCHHHHHHHH
Confidence            211    0                          111222210             112456789999999999999999


Q ss_pred             HHHHHH
Q psy12099        160 RDIIQR  165 (174)
Q Consensus       160 ~~~i~~  165 (174)
                      .+.+..
T Consensus       159 ~~~~~~  164 (221)
T cd04148         159 VRQIRL  164 (221)
T ss_pred             HHHHHh
Confidence            988753

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.65  E-value=1.1e-15  Score=109.91  Aligned_cols=111  Identities=18%  Similarity=0.295  Sum_probs=85.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++..|..|+++++++++|+|+          ++..++.....++..++......+.|+++++||+|+..+.
T Consensus        48 ~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  117 (159)
T cd04159          48 VWDLGGQPRFRSMWERYCRGVNAIVYVVDA----------ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL  117 (159)
T ss_pred             EEECCCCHhHHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc
Confidence            699999999999999999999999999999          7788888888888888876656788999999999986431


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                            ...+......                               +..   ...+.+.++++||+++.++.++|+++.
T Consensus       118 ------~~~~~~~~~~-------------------------------~~~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~  157 (159)
T cd04159         118 ------SVDELIEQMN-------------------------------LKS---ITDREVSCYSISCKEKTNIDIVLDWLI  157 (159)
T ss_pred             ------CHHHHHHHhC-------------------------------ccc---ccCCceEEEEEEeccCCChHHHHHHHh
Confidence                  1111111110                               000   112346778999999999999999986


Q ss_pred             H
Q psy12099        161 D  161 (174)
Q Consensus       161 ~  161 (174)
                      +
T Consensus       158 ~  158 (159)
T cd04159         158 K  158 (159)
T ss_pred             h
Confidence            4

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.64  E-value=2.1e-15  Score=111.22  Aligned_cols=121  Identities=17%  Similarity=0.194  Sum_probs=82.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|++.++.+|..++++++++++|+|+          ++.++++.... |...+...  ..+.|+++++||+|+...
T Consensus        53 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~----------~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~  120 (175)
T cd01870          53 LWDTAGQEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRND  120 (175)
T ss_pred             EEeCCCchhhhhccccccCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccC
Confidence            699999999999999999999999999999          78888888754 55554432  357899999999998653


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...  ...+.    ....            ..-....+..+...            .....+++|||+++.||+++|+++
T Consensus       121 ~~~--~~~i~----~~~~------------~~v~~~~~~~~~~~------------~~~~~~~~~Sa~~~~~v~~lf~~l  170 (175)
T cd01870         121 EHT--RRELA----KMKQ------------EPVKPEEGRDMANK------------IGAFGYMECSAKTKEGVREVFEMA  170 (175)
T ss_pred             hhh--hhhhh----hccC------------CCccHHHHHHHHHH------------cCCcEEEEeccccCcCHHHHHHHH
Confidence            211  11111    0000            00012233333211            122467899999999999999998


Q ss_pred             HHHH
Q psy12099        160 RDII  163 (174)
Q Consensus       160 ~~~i  163 (174)
                      .+..
T Consensus       171 ~~~~  174 (175)
T cd01870         171 TRAA  174 (175)
T ss_pred             HHHh
Confidence            8643

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04114 Rab30 Rab30 subfamily

Probab=99.63  E-value=1.9e-15  Score=110.80  Aligned_cols=109  Identities=22%  Similarity=0.248  Sum_probs=82.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++..|..|++.++++|+|+|+          ++..++.....|+..+... ...+.|+++++||+|+...+
T Consensus        60 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~  128 (169)
T cd04114          60 IWDTAGQERFRSITQSYYRSANALILTYDI----------TCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERR  128 (169)
T ss_pred             EEECCCcHHHHHHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECccccccc
Confidence            699999999999999999999999999999          7888888887777765432 23468999999999986432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..      .                        .+...     .|...        ....++++||+++.|++++|+++.
T Consensus       129 ~i------~------------------------~~~~~-----~~~~~--------~~~~~~~~Sa~~~~gv~~l~~~i~  165 (169)
T cd04114         129 EV------S------------------------QQRAE-----EFSDA--------QDMYYLETSAKESDNVEKLFLDLA  165 (169)
T ss_pred             cc------C------------------------HHHHH-----HHHHH--------cCCeEEEeeCCCCCCHHHHHHHHH
Confidence            11      0                        00111     11111        125678999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       166 ~~~  168 (169)
T cd04114         166 CRL  168 (169)
T ss_pred             HHh
Confidence            865

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04155 Arl3 Arl3 subfamily

Probab=99.62  E-value=2.4e-15  Score=110.74  Aligned_cols=111  Identities=23%  Similarity=0.347  Sum_probs=84.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++..|..++++++++++|+|.          ++..++.....++..++......++|+++++||+|+....
T Consensus        62 ~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~----------~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  131 (173)
T cd04155          62 VWDIGGQRAIRPYWRNYFENTDCLIYVIDS----------ADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA  131 (173)
T ss_pred             EEECCCCHHHHHHHHHHhcCCCEEEEEEeC----------CCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC
Confidence            599999999999999999999999999999          6778888888888888776555679999999999986421


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                            .+.+.....+                               +..   ...+.+.+.++||++++|++++|+++.
T Consensus       132 ------~~~~i~~~l~-------------------------------~~~---~~~~~~~~~~~Sa~~~~gi~~~~~~l~  171 (173)
T cd04155         132 ------PAEEIAEALN-------------------------------LHD---LRDRTWHIQACSAKTGEGLQEGMNWVC  171 (173)
T ss_pred             ------CHHHHHHHcC-------------------------------Ccc---cCCCeEEEEEeECCCCCCHHHHHHHHh
Confidence                  1111111111                               111   123456778999999999999999986


Q ss_pred             H
Q psy12099        161 D  161 (174)
Q Consensus       161 ~  161 (174)
                      +
T Consensus       172 ~  172 (173)
T cd04155         172 K  172 (173)
T ss_pred             c
Confidence            4

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04129 Rho2 Rho2 subfamily

Probab=99.61  E-value=2.1e-15  Score=113.12  Aligned_cols=127  Identities=18%  Similarity=0.168  Sum_probs=88.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +||++|++.++..+..++++++++|+|+|+          ++.+++.+... |...+.+.  ..++|++|+|||+|+..+
T Consensus        53 i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i----------~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~  120 (187)
T cd04129          53 LWDTAGQEEYERLRPLSYSKAHVILIGFAV----------DTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQD  120 (187)
T ss_pred             EEECCCChhccccchhhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhC
Confidence            699999999998888899999999999999          78889988864 66666443  246999999999998543


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...     .....+               ......+.+..+.. .           -....+++|||+++.||+++|+++
T Consensus       121 ~~~-----~~~~~~---------------~~~~~~~~~~~~~~-~-----------~~~~~~~e~Sa~~~~~v~~~f~~l  168 (187)
T cd04129         121 AVA-----KEEYRT---------------QRFVPIQQGKRVAK-E-----------IGAKKYMECSALTGEGVDDVFEAA  168 (187)
T ss_pred             ccc-----cccccc---------------CCcCCHHHHHHHHH-H-----------hCCcEEEEccCCCCCCHHHHHHHH
Confidence            221     000000               00011233333321 1           112367899999999999999999


Q ss_pred             HHHHHHhhhhhc
Q psy12099        160 RDIIQRMHLRQY  171 (174)
Q Consensus       160 ~~~i~~~~~~~~  171 (174)
                      .+.++...-++.
T Consensus       169 ~~~~~~~~~~~~  180 (187)
T cd04129         169 TRAALLVRKSEP  180 (187)
T ss_pred             HHHHhcccCccc
Confidence            988875544443

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd00876 Ras Ras family

Probab=99.61  E-value=2.8e-15  Score=108.39  Aligned_cols=110  Identities=22%  Similarity=0.161  Sum_probs=87.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.+...+..++++++++|+|+|+          ++..++.+...|+..+.+.......|+++++||+|+....
T Consensus        51 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  120 (160)
T cd00876          51 ILDTAGQEEFSAMRDLYIRQGDGFILVYSI----------TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER  120 (160)
T ss_pred             EEECCChHHHHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc
Confidence            599999999999999999999999999999          7888999999999988776444679999999999987522


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.+..+...             ....+.++||+++.||+++|+++.
T Consensus       121 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~S~~~~~~i~~l~~~l~  157 (160)
T cd00876         121 QV------------------------------SKEEGKALAKE-------------WGCPFIETSAKDNINIDEVFKLLV  157 (160)
T ss_pred             ee------------------------------cHHHHHHHHHH-------------cCCcEEEeccCCCCCHHHHHHHHH
Confidence            11                              12223333221             124677999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.|
T Consensus       158 ~~i  160 (160)
T cd00876         158 REI  160 (160)
T ss_pred             hhC
Confidence            753

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.60  E-value=2.4e-15  Score=114.52  Aligned_cols=70  Identities=21%  Similarity=0.293  Sum_probs=62.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC------------------CC
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR------------------WL   62 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~------------------~~   62 (174)
                      ||||+||++|+.++..||++++++|+|||+          ++..+++.+..|+.++.+..                  ..
T Consensus        58 IwDtaG~e~~~~l~~~~yr~ad~iIlVyDv----------tn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~  127 (202)
T cd04102          58 LWDVGGSESVKSTRAVFYNQVNGIILVHDL----------TNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGG  127 (202)
T ss_pred             EEecCCchhHHHHHHHHhCcCCEEEEEEEC----------cChHHHHHHHHHHHHHHHhhccccccccccccccccccCC
Confidence            699999999999999999999999999999          89999999999999986531                  12


Q ss_pred             CCCcEEEEEeCCchhhHH
Q psy12099         63 RTISVILFLNKQDLLAEK   80 (174)
Q Consensus        63 ~~~~iilv~NK~Dl~~~~   80 (174)
                      .++|++|||||+|+..++
T Consensus       128 ~~~PiilVGnK~Dl~~~r  145 (202)
T cd04102         128 NQIPLLVIGTKLDQIPEK  145 (202)
T ss_pred             CCceEEEEEECccchhhc
Confidence            468999999999997654

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>KOG0393|consensus

Probab=99.59  E-value=5.6e-15  Score=110.93  Aligned_cols=124  Identities=14%  Similarity=0.142  Sum_probs=88.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+||+.|.++|+..|.++|.+|+||++          .++.++++. ..|+-++..+.  +++|++|+|+|.||..+
T Consensus        57 LwDTAGqedYDrlRplsY~~tdvfl~cfsv----------~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d  124 (198)
T KOG0393|consen   57 LWDTAGQEDYDRLRPLSYPQTDVFLLCFSV----------VSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDD  124 (198)
T ss_pred             eeecCCCcccccccccCCCCCCEEEEEEEc----------CChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhC
Confidence            699999999999999999999999999999          899999986 56666665443  78999999999999743


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ..     .+++.......+.             ..+++...        .+    .-.-+.+.++||++..|++++|+..
T Consensus       125 ~~-----~~~~l~~~~~~~V-------------t~~~g~~l--------A~----~iga~~y~EcSa~tq~~v~~vF~~a  174 (198)
T KOG0393|consen  125 PS-----TLEKLQRQGLEPV-------------TYEQGLEL--------AK----EIGAVKYLECSALTQKGVKEVFDEA  174 (198)
T ss_pred             HH-----HHHHHHhccCCcc-------------cHHHHHHH--------HH----HhCcceeeeehhhhhCCcHHHHHHH
Confidence            21     1122211111111             12222221        11    0122567899999999999999999


Q ss_pred             HHHHHHh
Q psy12099        160 RDIIQRM  166 (174)
Q Consensus       160 ~~~i~~~  166 (174)
                      ....+..
T Consensus       175 ~~~~l~~  181 (198)
T KOG0393|consen  175 IRAALRP  181 (198)
T ss_pred             HHHHhcc
Confidence            8888753

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.59  E-value=7.4e-15  Score=112.44  Aligned_cols=66  Identities=15%  Similarity=0.168  Sum_probs=59.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+...  ..+.|+++++||+|+..
T Consensus        62 ~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~  127 (215)
T PTZ00132         62 VWDTAGQEKFGGLRDGYYIKGQCAIIMFDV----------TSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKD  127 (215)
T ss_pred             EEECCCchhhhhhhHHHhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCcc
Confidence            599999999999999999999999999999          8999999998998887654  35789999999999854

>KOG4252|consensus

Probab=99.58  E-value=1.2e-14  Score=106.59  Aligned_cols=112  Identities=14%  Similarity=0.193  Sum_probs=88.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||+|||+.|..+..-||++|.+.++||+-          +++.+|+..++|.+.+.+..  ..+|.+++-||+|+.+.-
T Consensus        73 lWdtagqeEfDaItkAyyrgaqa~vLVFST----------TDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds  140 (246)
T KOG4252|consen   73 LWDTAGQEEFDAITKAYYRGAQASVLVFST----------TDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDS  140 (246)
T ss_pred             HHHhccchhHHHHHHHHhccccceEEEEec----------ccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhh
Confidence            599999999999999999999999999999          99999999999999987653  589999999999998753


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  .                         ...++.   ..+..             ....+.||++..-||..+|..++
T Consensus       141 ~~--~-------------------------~~evE~---lak~l-------------~~RlyRtSvked~NV~~vF~YLa  177 (246)
T KOG4252|consen  141 QM--D-------------------------KGEVEG---LAKKL-------------HKRLYRTSVKEDFNVMHVFAYLA  177 (246)
T ss_pred             hc--c-------------------------hHHHHH---HHHHh-------------hhhhhhhhhhhhhhhHHHHHHHH
Confidence            22  0                         001111   11111             12234599999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.+.++.
T Consensus       178 eK~~q~~  184 (246)
T KOG4252|consen  178 EKLTQQK  184 (246)
T ss_pred             HHHHHHH
Confidence            8887653

>cd00154 Rab Rab family

Probab=99.58  E-value=7.8e-15  Score=105.30  Aligned_cols=106  Identities=20%  Similarity=0.211  Sum_probs=83.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++..|..++++++++|+|+|+          ++.+++.....|+..+.... ..+.|+++++||+|+....
T Consensus        53 l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~  121 (159)
T cd00154          53 IWDTAGQERFRSITPSYYRGAHGAILVYDI----------TNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQR  121 (159)
T ss_pred             EEecCChHHHHHHHHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccc
Confidence            699999999999999999999999999999          78888998888888876653 2578999999999986221


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..++..++..             .....+.++||+++.++.++|.++.
T Consensus       122 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         122 QV------------------------------STEEAQQFAK-------------ENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             cc------------------------------cHHHHHHHHH-------------HcCCeEEEEecCCCCCHHHHHHHHh
Confidence            10                              1122333321             1236788999999999999999875

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PLN00023 GTP-binding protein; Provisional

Probab=99.56  E-value=6.4e-15  Score=118.62  Aligned_cols=69  Identities=14%  Similarity=0.207  Sum_probs=61.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC-----------CCCCcEEE
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW-----------LRTISVIL   69 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~-----------~~~~~iil   69 (174)
                      ||||+||++|+.+|..||++++++|+|||+          ++..+++.+..|++.+.....           ..++|++|
T Consensus        87 IWDTAGqErfrsL~~~yyr~AdgiILVyDI----------Tdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIIL  156 (334)
T PLN00023         87 LWDVSGHERYKDCRSLFYSQINGVIFVHDL----------SQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIV  156 (334)
T ss_pred             EEECCCChhhhhhhHHhccCCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEE
Confidence            699999999999999999999999999999          899999999999999875421           23689999


Q ss_pred             EEeCCchhhH
Q psy12099         70 FLNKQDLLAE   79 (174)
Q Consensus        70 v~NK~Dl~~~   79 (174)
                      ||||+||..+
T Consensus       157 VGNK~DL~~~  166 (334)
T PLN00023        157 IGNKADIAPK  166 (334)
T ss_pred             EEECcccccc
Confidence            9999999654

>cd01890 LepA LepA subfamily

Probab=99.55  E-value=2.5e-14  Score=105.85  Aligned_cols=106  Identities=11%  Similarity=0.102  Sum_probs=71.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++.++..|..++++++++|+|+|+          ++..+......| ..+..    .++|+++++||+|+....
T Consensus        71 l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~----------~~~~~~~~~~~~-~~~~~----~~~~iiiv~NK~Dl~~~~  135 (179)
T cd01890          71 LIDTPGHVDFSYEVSRSLAACEGALLLVDA----------TQGVEAQTLANF-YLALE----NNLEIIPVINKIDLPSAD  135 (179)
T ss_pred             EEECCCChhhHHHHHHHHHhcCeEEEEEEC----------CCCccHhhHHHH-HHHHH----cCCCEEEEEECCCCCcCC
Confidence            699999999999999999999999999999          444333333223 23222    367999999999985421


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..   ...                             .+ +.+.    ..   .  ....++++||++|.||+++|+++.
T Consensus       136 ~~---~~~-----------------------------~~-~~~~----~~---~--~~~~~~~~Sa~~g~gi~~l~~~l~  173 (179)
T cd01890         136 PE---RVK-----------------------------QQ-IEDV----LG---L--DPSEAILVSAKTGLGVEDLLEAIV  173 (179)
T ss_pred             HH---HHH-----------------------------HH-HHHH----hC---C--CcccEEEeeccCCCCHHHHHHHHH
Confidence            11   000                             00 1111    01   0  112467999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       174 ~~~  176 (179)
T cd01890         174 ERI  176 (179)
T ss_pred             hhC
Confidence            754

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd00157 Rho Rho (Ras homology) family

Probab=99.53  E-value=3.6e-14  Score=103.93  Aligned_cols=118  Identities=14%  Similarity=0.172  Sum_probs=81.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +||++||+.+...+..+++.++++++|+|+          ++..++..... |+..+...  ..+.|+++++||+|+...
T Consensus        52 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~  119 (171)
T cd00157          52 LWDTAGQEEYDRLRPLSYPNTDVFLICFSV----------DSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDD  119 (171)
T ss_pred             EEeCCCcccccccchhhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhc
Confidence            699999999999999999999999999999          78888887765 44444433  237999999999999764


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      .-.     . .+. .+..           . .-..+++.++...            .....++++||+++.|+.++|+++
T Consensus       120 ~~~-----~-~~~-~~~~-----------~-~v~~~~~~~~~~~------------~~~~~~~~~Sa~~~~gi~~l~~~i  168 (171)
T cd00157         120 ENT-----L-KKL-EKGK-----------E-PITPEEGEKLAKE------------IGAIGYMECSALTQEGVKEVFEEA  168 (171)
T ss_pred             hhh-----h-hhc-ccCC-----------C-ccCHHHHHHHHHH------------hCCeEEEEeecCCCCCHHHHHHHH
Confidence            321     0 111 0000           0 0012333433221            122378899999999999999988


Q ss_pred             HH
Q psy12099        160 RD  161 (174)
Q Consensus       160 ~~  161 (174)
                      .+
T Consensus       169 ~~  170 (171)
T cd00157         169 IR  170 (171)
T ss_pred             hh
Confidence            65

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.51  E-value=1.1e-13  Score=105.60  Aligned_cols=128  Identities=13%  Similarity=0.145  Sum_probs=84.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||++++.+|..|+++++++++|+|.          ....++.+....|...+........|+++++||+|++.+.
T Consensus        58 ~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~----------~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~  127 (219)
T COG1100          58 LWDTAGQEEYRSLRPEYYRGANGILIVYDS----------TLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ  127 (219)
T ss_pred             eecCCCHHHHHHHHHHHhcCCCEEEEEEec----------ccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence            699999999999999999999999999999          6766666665444444444333578999999999999765


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc--cchhHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV--DTENIRRVFND  158 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~--d~~~i~~~f~~  158 (174)
                      ..  ...+...+.  ..              ..+.....+..      ..   ...... +.++||+  .+.+|.++|..
T Consensus       128 ~~--~~~~~~~~~--~~--------------~~~~~~~~~~~------~~---~~~~~~-~~~~s~~~~~~~~v~~~~~~  179 (219)
T COG1100         128 SS--SEEILNQLN--RE--------------VVLLVLAPKAV------LP---EVANPA-LLETSAKSLTGPNVNELFKE  179 (219)
T ss_pred             hH--HHHHHhhhh--cC--------------cchhhhHhHHh------hh---hhcccc-eeEeecccCCCcCHHHHHHH
Confidence            33  111111100  00              00111111110      00   011223 6789999  99999999999


Q ss_pred             HHHHHHHh
Q psy12099        159 CRDIIQRM  166 (174)
Q Consensus       159 ~~~~i~~~  166 (174)
                      +...+...
T Consensus       180 ~~~~~~~~  187 (219)
T COG1100         180 LLRKLLEE  187 (219)
T ss_pred             HHHHHHHh
Confidence            99888654

>cd04171 SelB SelB subfamily

Probab=99.45  E-value=5e-13  Score=97.01  Aligned_cols=109  Identities=14%  Similarity=0.128  Sum_probs=68.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||+++......++++++++|+|+|+          ++ ....++...+..+ ..  ....|+++++||+|+..+.
T Consensus        55 ~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~----------~~-~~~~~~~~~~~~~-~~--~~~~~~ilv~NK~Dl~~~~  120 (164)
T cd04171          55 FIDVPGHEKFIKNMLAGAGGIDLVLLVVAA----------DE-GIMPQTREHLEIL-EL--LGIKRGLVVLTKADLVDED  120 (164)
T ss_pred             EEECCChHHHHHHHHhhhhcCCEEEEEEEC----------CC-CccHhHHHHHHHH-HH--hCCCcEEEEEECccccCHH
Confidence            699999999988888899999999999999          33 1112222222221 11  1224999999999996542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  . .                         ..++..+++    ..      .......++++||+++.|++++|+.+.
T Consensus       121 ~~--~-~-------------------------~~~~~~~~~----~~------~~~~~~~~~~~Sa~~~~~v~~l~~~l~  162 (164)
T cd04171         121 WL--E-L-------------------------VEEEIRELL----AG------TFLADAPIFPVSAVTGEGIEELKEYLD  162 (164)
T ss_pred             HH--H-H-------------------------HHHHHHHHH----Hh------cCcCCCcEEEEeCCCCcCHHHHHHHHh
Confidence            10  0 0                         001111111    11      001235678999999999999998875


Q ss_pred             H
Q psy12099        161 D  161 (174)
Q Consensus       161 ~  161 (174)
                      .
T Consensus       163 ~  163 (164)
T cd04171         163 E  163 (164)
T ss_pred             h
Confidence            3

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG4423|consensus

Probab=99.43  E-value=1.7e-13  Score=101.11  Aligned_cols=116  Identities=11%  Similarity=0.088  Sum_probs=89.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC---CCCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR---WLRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~---~~~~~~iilv~NK~Dl~   77 (174)
                      +||++||++|..+..-||+.+++..+|||+          ++...++.+..|.+++....   ....+|+++++||||..
T Consensus        79 LwdIagQerfg~mtrVyykea~~~~iVfdv----------t~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e  148 (229)
T KOG4423|consen   79 LWDIAGQERFGNMTRVYYKEAHGAFIVFDV----------TRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQE  148 (229)
T ss_pred             HhcchhhhhhcceEEEEecCCcceEEEEEc----------cccccccHHHHHHHhccCcccCCCCCcchheeccchhccC
Confidence            699999999999999999999999999999          78889999999999875543   33457999999999986


Q ss_pred             hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099         78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN  157 (174)
Q Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~  157 (174)
                      ..-..+....+..+..                                         .+...-..+||||...|+.++-+
T Consensus       149 ~~a~~~~~~~~d~f~k-----------------------------------------engf~gwtets~Kenkni~Ea~r  187 (229)
T KOG4423|consen  149 KSAKNEATRQFDNFKK-----------------------------------------ENGFEGWTETSAKENKNIPEAQR  187 (229)
T ss_pred             hHhhhhhHHHHHHHHh-----------------------------------------ccCccceeeeccccccChhHHHH
Confidence            5432200011111111                                         12234567899999999999999


Q ss_pred             HHHHHHHHhh
Q psy12099        158 DCRDIIQRMH  167 (174)
Q Consensus       158 ~~~~~i~~~~  167 (174)
                      .+.+.|+.+.
T Consensus       188 ~lVe~~lvnd  197 (229)
T KOG4423|consen  188 ELVEKILVND  197 (229)
T ss_pred             HHHHHHHhhc
Confidence            9999988764

>cd01898 Obg Obg subfamily

Probab=99.40  E-value=9.6e-13  Score=96.34  Aligned_cols=109  Identities=14%  Similarity=0.083  Sum_probs=72.2

Q ss_pred             CeeCCCCc----hhhhhHhhh---hcCCCEEEEEEeCCCccccccCCCCc-chHHHHHHHHHHHHcCC-CCCCCcEEEEE
Q psy12099          1 MFDVGGQR----DERRKWIQC---FNDVTAIIFVTACSSYNMVLREDPTQ-NRLRESLDLFKSIWNNR-WLRTISVILFL   71 (174)
Q Consensus         1 iwD~~Gq~----~~r~~w~~y---~~~~~~ii~v~d~s~~~~~~~e~~~~-~~~~~~~~~~~~i~~~~-~~~~~~iilv~   71 (174)
                      +|||+|+.    .++.++..|   +++++++|+|+|.          ++. +++.....|.+.+.... ...+.|+++++
T Consensus        52 l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~  121 (170)
T cd01898          52 VADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDL----------SGDDDPVEDYKTIRNELELYNPELLEKPRIVVL  121 (170)
T ss_pred             EEecCcccCcccccCCchHHHHHHHHhCCEEEEEEec----------CCCCCHHHHHHHHHHHHHHhCccccccccEEEE
Confidence            69999973    333344444   4469999999999          666 67777767766665432 23578999999


Q ss_pred             eCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchh
Q psy12099         72 NKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTEN  151 (174)
Q Consensus        72 NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~  151 (174)
                      ||+|+......      .                         +....+..            ......++.+||+++.+
T Consensus       122 NK~Dl~~~~~~------~-------------------------~~~~~~~~------------~~~~~~~~~~Sa~~~~g  158 (170)
T cd01898         122 NKIDLLDEEEL------F-------------------------ELLKELLK------------ELWGKPVFPISALTGEG  158 (170)
T ss_pred             EchhcCCchhh------H-------------------------HHHHHHHh------------hCCCCCEEEEecCCCCC
Confidence            99998543211      0                         11111110            00235677899999999


Q ss_pred             HHHHHHHHHHH
Q psy12099        152 IRRVFNDCRDI  162 (174)
Q Consensus       152 i~~~f~~~~~~  162 (174)
                      ++++|+++.+.
T Consensus       159 i~~l~~~i~~~  169 (170)
T cd01898         159 LDELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.39  E-value=1.8e-12  Score=94.78  Aligned_cols=106  Identities=22%  Similarity=0.149  Sum_probs=68.7

Q ss_pred             CeeCCCCchhhhhHh----------hhhcCCCEEEEEEeCCCccccccCCCCcch--HHHHHHHHHHHHcCCCCCCCcEE
Q psy12099          1 MFDVGGQRDERRKWI----------QCFNDVTAIIFVTACSSYNMVLREDPTQNR--LRESLDLFKSIWNNRWLRTISVI   68 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~----------~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~--~~~~~~~~~~i~~~~~~~~~~ii   68 (174)
                      ||||+|+.. +..|.          .....++++|+|+|.          ++..+  ++....|+..+...  ..+.|++
T Consensus        51 i~Dt~G~~~-~~~~~~~~~~~~~~~~~~~~~d~~l~v~d~----------~~~~~~~~~~~~~~~~~l~~~--~~~~pvi  117 (168)
T cd01897          51 VIDTPGLLD-RPLEERNTIEMQAITALAHLRAAVLFLFDP----------SETCGYSLEEQLSLFEEIKPL--FKNKPVI  117 (168)
T ss_pred             EEECCCcCC-ccccCCchHHHHHHHHHHhccCcEEEEEeC----------CcccccchHHHHHHHHHHHhh--cCcCCeE
Confidence            699999842 11111          111236899999999          44443  45556677776433  3578999


Q ss_pred             EEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeeccccc
Q psy12099         69 LFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVD  148 (174)
Q Consensus        69 lv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d  148 (174)
                      +++||+|+......                                ....++     .        ....+.+++|||++
T Consensus       118 lv~NK~Dl~~~~~~--------------------------------~~~~~~-----~--------~~~~~~~~~~Sa~~  152 (168)
T cd01897         118 VVLNKIDLLTFEDL--------------------------------SEIEEE-----E--------ELEGEEVLKISTLT  152 (168)
T ss_pred             EEEEccccCchhhH--------------------------------HHHHHh-----h--------hhccCceEEEEecc
Confidence            99999999653211                                001111     0        11235678999999


Q ss_pred             chhHHHHHHHHHHHHH
Q psy12099        149 TENIRRVFNDCRDIIQ  164 (174)
Q Consensus       149 ~~~i~~~f~~~~~~i~  164 (174)
                      +.|++++|+++.+.++
T Consensus       153 ~~gi~~l~~~l~~~~~  168 (168)
T cd01897         153 EEGVDEVKNKACELLL  168 (168)
T ss_pred             cCCHHHHHHHHHHHhC
Confidence            9999999999988763

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.36  E-value=8.1e-13  Score=94.34  Aligned_cols=98  Identities=18%  Similarity=0.168  Sum_probs=63.4

Q ss_pred             CeeCCCC-----chhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCc
Q psy12099          1 MFDVGGQ-----RDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQD   75 (174)
Q Consensus         1 iwD~~Gq-----~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~D   75 (174)
                      +|||+|+     +.++.+.. .+++++++|+|+|+          ++..++.. ..|.. ..      ..|+++++||+|
T Consensus        39 ~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~----------~~~~s~~~-~~~~~-~~------~~p~ilv~NK~D   99 (142)
T TIGR02528        39 AIDTPGEYVENRRLYSALIV-TAADADVIALVQSA----------TDPESRFP-PGFAS-IF------VKPVIGLVTKID   99 (142)
T ss_pred             eecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecC----------CCCCcCCC-hhHHH-hc------cCCeEEEEEeec
Confidence            5999998     34555544 58999999999999          55555433 23322 21      239999999999


Q ss_pred             hhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHH
Q psy12099         76 LLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRV  155 (174)
Q Consensus        76 l~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~  155 (174)
                      +.+....                               .+.+.+++..            .....++++||+++.|++++
T Consensus       100 l~~~~~~-------------------------------~~~~~~~~~~------------~~~~~~~~~Sa~~~~gi~~l  136 (142)
T TIGR02528       100 LAEADVD-------------------------------IERAKELLET------------AGAEPIFEISSVDEQGLEAL  136 (142)
T ss_pred             cCCcccC-------------------------------HHHHHHHHHH------------cCCCcEEEEecCCCCCHHHH
Confidence            8642110                               1122233211            01124678999999999999


Q ss_pred             HHHHH
Q psy12099        156 FNDCR  160 (174)
Q Consensus       156 f~~~~  160 (174)
                      |+++.
T Consensus       137 ~~~l~  141 (142)
T TIGR02528       137 VDYLN  141 (142)
T ss_pred             HHHHh
Confidence            98874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.35  E-value=1e-11  Score=90.56  Aligned_cols=112  Identities=15%  Similarity=0.098  Sum_probs=72.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++.++.+|..+++.++++++|+|.++          .. .......+..+..    .+.|+++++||+|+....
T Consensus        54 iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~----------~~-~~~~~~~~~~~~~----~~~p~ivv~NK~Dl~~~~  118 (168)
T cd01887          54 FIDTPGHEAFTNMRARGASLTDIAILVVAADD----------GV-MPQTIEAIKLAKA----ANVPFIVALNKIDKPNAN  118 (168)
T ss_pred             EEeCCCcHHHHHHHHHHHhhcCEEEEEEECCC----------Cc-cHHHHHHHHHHHH----cCCCEEEEEEceeccccc
Confidence            69999999999999999999999999999943          21 1122222332221    367999999999986432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..    .+...+..+.                         ..    ...   .....+.++.+||+++.|+.++|+++.
T Consensus       119 ~~----~~~~~~~~~~-------------------------~~----~~~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~  162 (168)
T cd01887         119 PE----RVKNELSELG-------------------------LQ----GED---EWGGDVQIVPTSAKTGEGIDDLLEAIL  162 (168)
T ss_pred             HH----HHHHHHHHhh-------------------------cc----ccc---cccCcCcEEEeecccCCCHHHHHHHHH
Confidence            11    1111000000                         00    000   012346778999999999999999987


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +..
T Consensus       163 ~~~  165 (168)
T cd01887         163 LLA  165 (168)
T ss_pred             Hhh
Confidence            653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.33  E-value=1.6e-12  Score=97.92  Aligned_cols=96  Identities=15%  Similarity=0.110  Sum_probs=65.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++|+..|..|+++++++|+|+|.+          +. .+.....++..+..    .++|+++++||+|+..+.
T Consensus        69 l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~----------~~-~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~  133 (194)
T cd01891          69 IVDTPGHADFGGEVERVLSMVDGVLLLVDAS----------EG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPDAR  133 (194)
T ss_pred             EEECCCcHHHHHHHHHHHHhcCEEEEEEECC----------CC-ccHHHHHHHHHHHH----cCCCEEEEEECCCCCCCC
Confidence            6999999999999999999999999999993          31 12233334444332    368999999999996433


Q ss_pred             Hhccccchhhhhhc-------cCCCCCCCCCCCCCCCC
Q psy12099         81 VKAGKSRLEDYFQE-------FTRYQTPLDATPDPGED  111 (174)
Q Consensus        81 ~~~~~~~l~~~~~~-------~~~~~~~~~a~~~~g~~  111 (174)
                      .......+.+++..       .+.+..++||++|.|.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~  171 (194)
T cd01891         134 PEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASL  171 (194)
T ss_pred             HHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccc
Confidence            21001234444422       23456788999998864

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.32  E-value=9e-12  Score=87.66  Aligned_cols=108  Identities=21%  Similarity=0.227  Sum_probs=79.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|+..+...|..+++.++++|+|+|+          +...++.....|+..........+.|+++++||+|+....
T Consensus        49 l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~  118 (157)
T cd00882          49 IWDTAGQERFRSLRRLYYRGADGIILVYDV----------TDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER  118 (157)
T ss_pred             EEecCChHHHHhHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc
Confidence            699999999999999999999999999999          7777777777764444444445689999999999986542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  . .                           ....    ..+        .....+.++.+||+++.++.++++++.
T Consensus       119 ~~--~-~---------------------------~~~~----~~~--------~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         119 VV--S-E---------------------------EELA----EQL--------AKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             ch--H-H---------------------------HHHH----HHH--------HhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            11  0 0                           0000    000        112346788999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.32  E-value=1.1e-11  Score=101.17  Aligned_cols=112  Identities=15%  Similarity=0.191  Sum_probs=76.3

Q ss_pred             CeeCCCCc-------hhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC-CCCCCCcEEEEEe
Q psy12099          1 MFDVGGQR-------DERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN-RWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~-------~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~-~~~~~~~iilv~N   72 (174)
                      ||||+|.-       .....|..+++.++++|+|+|+          ++.+++++...|.+++... +.+.+.|++||+|
T Consensus       210 i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~----------s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~N  279 (335)
T PRK12299        210 IADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDI----------EAVDPVEDYKTIRNELEKYSPELADKPRILVLN  279 (335)
T ss_pred             EEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcC----------CCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEE
Confidence            69999973       2344555567789999999999          5555677777777766443 2345789999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI  152 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i  152 (174)
                      |+|+..+...  .                            .+....++.             ...+.++++||+++++|
T Consensus       280 KiDL~~~~~~--~----------------------------~~~~~~~~~-------------~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        280 KIDLLDEEEE--R----------------------------EKRAALELA-------------ALGGPVFLISAVTGEGL  316 (335)
T ss_pred             CcccCCchhH--H----------------------------HHHHHHHHH-------------hcCCCEEEEEcCCCCCH
Confidence            9998643211  0                            001111110             01245778999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy12099        153 RRVFNDCRDIIQR  165 (174)
Q Consensus       153 ~~~f~~~~~~i~~  165 (174)
                      +++|+++.+.+..
T Consensus       317 ~eL~~~L~~~l~~  329 (335)
T PRK12299        317 DELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988754

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.32  E-value=8.9e-12  Score=92.40  Aligned_cols=120  Identities=10%  Similarity=0.111  Sum_probs=75.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH-
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE-   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~-   79 (174)
                      +|||+|+..++..|..++++++++|+|+|.+          .... .....++.....    .+.|+++++||+|+..+ 
T Consensus        66 liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~-~~~~~~~~~~~~----~~~~i~iv~nK~D~~~~~  130 (189)
T cd00881          66 FIDTPGHEDFSSEVIRGLSVSDGAILVVDAN----------EGVQ-PQTREHLRIARE----GGLPIIVAINKIDRVGEE  130 (189)
T ss_pred             EEeCCCcHHHHHHHHHHHHhcCEEEEEEECC----------CCCc-HHHHHHHHHHHH----CCCCeEEEEECCCCcchh
Confidence            5999999999999999999999999999993          3222 222333333322    46899999999999752 


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ........+.+.+...+..               ...+..+             .......++++||+++.|+.++|..+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~-------------~~~~~~~v~~~Sa~~g~gi~~l~~~l  182 (189)
T cd00881         131 DLEEVLREIKELLGLIGFI---------------STKEEGT-------------RNGLLVPIVPGSALTGIGVEELLEAI  182 (189)
T ss_pred             cHHHHHHHHHHHHcccccc---------------chhhhhc-------------ccCCcceEEEEecccCcCHHHHHHHH
Confidence            1110001122222211100               0000000             11235678899999999999999998


Q ss_pred             HHHH
Q psy12099        160 RDII  163 (174)
Q Consensus       160 ~~~i  163 (174)
                      .+.+
T Consensus       183 ~~~l  186 (189)
T cd00881         183 VEHL  186 (189)
T ss_pred             HhhC
Confidence            8764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>KOG0096|consensus

Probab=99.31  E-value=1.1e-12  Score=96.99  Aligned_cols=107  Identities=19%  Similarity=0.171  Sum_probs=89.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|||.+..+...||=...|+|++||+          +.......+..|.++++...  .|+||+++|||.|....+
T Consensus        63 ~wdtagqEk~gglrdgyyI~~qcAiimFdV----------tsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~  130 (216)
T KOG0096|consen   63 VWDTAGQEKKGGLRDGYYIQGQCAIIMFDV----------TSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARK  130 (216)
T ss_pred             eeecccceeecccccccEEecceeEEEeee----------eehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccc
Confidence            599999999999999999999999999999          88888999999999987764  479999999999997765


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  ..++.                              |             ..++.+.+++.||+..-|....|.+++
T Consensus       131 ~k--~k~v~------------------------------~-------------~rkknl~y~~iSaksn~NfekPFl~La  165 (216)
T KOG0096|consen  131 VK--AKPVS------------------------------F-------------HRKKNLQYYEISAKSNYNFERPFLWLA  165 (216)
T ss_pred             cc--cccce------------------------------e-------------eecccceeEEeecccccccccchHHHh
Confidence            44  22211                              1             235668889999999999999999998


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      ..+.
T Consensus       166 rKl~  169 (216)
T KOG0096|consen  166 RKLT  169 (216)
T ss_pred             hhhc
Confidence            7664

>PRK04213 GTP-binding protein; Provisional

Probab=99.31  E-value=1.4e-11  Score=93.11  Aligned_cols=120  Identities=13%  Similarity=0.205  Sum_probs=68.9

Q ss_pred             CeeCCC-----------CchhhhhHhhhhc-C---CCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCC
Q psy12099          1 MFDVGG-----------QRDERRKWIQCFN-D---VTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTI   65 (174)
Q Consensus         1 iwD~~G-----------q~~~r~~w~~y~~-~---~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~   65 (174)
                      +|||+|           +++++..|.+|++ +   ++++++|+|.+.+......-............+..+ ..   .++
T Consensus        56 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~---~~~  131 (201)
T PRK04213         56 LTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFL-RE---LGI  131 (201)
T ss_pred             EEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHH-HH---cCC
Confidence            699999           8999999999986 3   468888888854432110000000111112222222 21   368


Q ss_pred             cEEEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcc--eeeee
Q psy12099         66 SVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHY--CYPHF  143 (174)
Q Consensus        66 ~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~--~~~~~  143 (174)
                      |+++++||+|+.... .   ....++                              .+.+. +..    ..+.  ..++.
T Consensus       132 p~iiv~NK~Dl~~~~-~---~~~~~~------------------------------~~~~~-~~~----~~~~~~~~~~~  172 (201)
T PRK04213        132 PPIVAVNKMDKIKNR-D---EVLDEI------------------------------AERLG-LYP----PWRQWQDIIAP  172 (201)
T ss_pred             CeEEEEECccccCcH-H---HHHHHH------------------------------HHHhc-CCc----cccccCCcEEE
Confidence            999999999986432 1   011111                              01000 000    0011  24678


Q ss_pred             cccccchhHHHHHHHHHHHHH
Q psy12099        144 TCAVDTENIRRVFNDCRDIIQ  164 (174)
Q Consensus       144 tsA~d~~~i~~~f~~~~~~i~  164 (174)
                      +||+++ ||+++|+++.+.+-
T Consensus       173 ~SA~~g-gi~~l~~~l~~~~~  192 (201)
T PRK04213        173 ISAKKG-GIEELKEAIRKRLH  192 (201)
T ss_pred             EecccC-CHHHHHHHHHHhhc
Confidence            999999 99999999988764

>KOG1673|consensus

Probab=99.31  E-value=2e-11  Score=87.87  Aligned_cols=115  Identities=19%  Similarity=0.278  Sum_probs=85.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||+|||++++.+-+.-..++-+++|+||+          +.+.++....+|+++.....  +..--+|+|+|.|++-..
T Consensus        73 IwdlgG~~~~~n~lPiac~dsvaIlFmFDL----------t~r~TLnSi~~WY~QAr~~N--ktAiPilvGTKyD~fi~l  140 (205)
T KOG1673|consen   73 IWDLGGQREFINMLPIACKDSVAILFMFDL----------TRRSTLNSIKEWYRQARGLN--KTAIPILVGTKYDLFIDL  140 (205)
T ss_pred             EEecCCcHhhhccCceeecCcEEEEEEEec----------CchHHHHHHHHHHHHHhccC--CccceEEeccchHhhhcC
Confidence            799999999999999999999999999999          89999999999999976532  233335779999987542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                       +   ..+       .              .+....|+.|.+.             -....+++||....||+.+|.-+.
T Consensus       141 -p---~e~-------Q--------------~~I~~qar~YAk~-------------mnAsL~F~Sts~sINv~KIFK~vl  182 (205)
T KOG1673|consen  141 -P---PEL-------Q--------------ETISRQARKYAKV-------------MNASLFFCSTSHSINVQKIFKIVL  182 (205)
T ss_pred             -C---HHH-------H--------------HHHHHHHHHHHHH-------------hCCcEEEeeccccccHHHHHHHHH
Confidence             1   111       1              0123345555321             123567899999999999999988


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      ..+++
T Consensus       183 AklFn  187 (205)
T KOG1673|consen  183 AKLFN  187 (205)
T ss_pred             HHHhC
Confidence            87764

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.30  E-value=2.1e-11  Score=92.78  Aligned_cols=111  Identities=13%  Similarity=0.012  Sum_probs=69.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++.+..-+.....+++++|+|+|.          ++......+...+..+..   ....|++|++||+|+..+.
T Consensus        87 ~iDtPG~~~~~~~~~~~~~~~D~~llVvd~----------~~~~~~~~t~~~l~~~~~---~~~~~iiivvNK~Dl~~~~  153 (203)
T cd01888          87 FVDCPGHEILMATMLSGAAVMDGALLLIAA----------NEPCPQPQTSEHLAALEI---MGLKHIIIVQNKIDLVKEE  153 (203)
T ss_pred             EEECCChHHHHHHHHHhhhcCCEEEEEEEC----------CCCCCCcchHHHHHHHHH---cCCCcEEEEEEchhccCHH
Confidence            699999999999888888999999999999          332111111222222211   1225799999999996531


Q ss_pred             -HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         81 -VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        81 -~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                       ..                                 ...+.+...+...      ....+.++.+||++++||+++|+.+
T Consensus       154 ~~~---------------------------------~~~~~i~~~~~~~------~~~~~~i~~vSA~~g~gi~~L~~~l  194 (203)
T cd01888         154 QAL---------------------------------ENYEQIKKFVKGT------IAENAPIIPISAQLKYNIDVLLEYI  194 (203)
T ss_pred             HHH---------------------------------HHHHHHHHHHhcc------ccCCCcEEEEeCCCCCCHHHHHHHH
Confidence             11                                 0111111111110      0123557789999999999999998


Q ss_pred             HHHH
Q psy12099        160 RDII  163 (174)
Q Consensus       160 ~~~i  163 (174)
                      .+.+
T Consensus       195 ~~~l  198 (203)
T cd01888         195 VKKI  198 (203)
T ss_pred             HHhC
Confidence            7644

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.28  E-value=1.6e-11  Score=88.55  Aligned_cols=101  Identities=16%  Similarity=0.089  Sum_probs=67.9

Q ss_pred             CeeCCCCchhhh------hHhhhhc--CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDERR------KWIQCFN--DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r~------~w~~y~~--~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +|||+|++.+..      ++..++.  +++++|+|+|.          .+.+.   ...++..+..    .+.|+++++|
T Consensus        47 liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~----------~~~~~---~~~~~~~~~~----~~~~~iiv~N  109 (158)
T cd01879          47 IVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDA----------TNLER---NLYLTLQLLE----LGLPVVVALN  109 (158)
T ss_pred             EEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeC----------Ccchh---HHHHHHHHHH----cCCCEEEEEe
Confidence            699999988765      4777885  99999999999          44332   2234444433    2689999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI  152 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i  152 (174)
                      |+|+......  ...                          .   ..+ ..            ...+.++++||.++.|+
T Consensus       110 K~Dl~~~~~~--~~~--------------------------~---~~~-~~------------~~~~~~~~iSa~~~~~~  145 (158)
T cd01879         110 MIDEAEKRGI--KID--------------------------L---DKL-SE------------LLGVPVVPTSARKGEGI  145 (158)
T ss_pred             hhhhcccccc--hhh--------------------------H---HHH-HH------------hhCCCeEEEEccCCCCH
Confidence            9998643211  000                          0   011 11            01245779999999999


Q ss_pred             HHHHHHHHHH
Q psy12099        153 RRVFNDCRDI  162 (174)
Q Consensus       153 ~~~f~~~~~~  162 (174)
                      .++|+.+...
T Consensus       146 ~~l~~~l~~~  155 (158)
T cd01879         146 DELKDAIAEL  155 (158)
T ss_pred             HHHHHHHHHH
Confidence            9999988764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.27  E-value=7.2e-12  Score=95.42  Aligned_cols=69  Identities=26%  Similarity=0.430  Sum_probs=58.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCC-CEEEEEEeCCCccccccCCCCc-chHHHHHHHHHHHHcCCCC--CCCcEEEEEeCCch
Q psy12099          1 MFDVGGQRDERRKWIQCFNDV-TAIIFVTACSSYNMVLREDPTQ-NRLRESLDLFKSIWNNRWL--RTISVILFLNKQDL   76 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~-~~ii~v~d~s~~~~~~~e~~~~-~~~~~~~~~~~~i~~~~~~--~~~~iilv~NK~Dl   76 (174)
                      |||++||+++|..|..|++++ +++|||+|.          ++. +++.++..++..++.....  .++|++|++||+|+
T Consensus        52 l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~----------~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl  121 (203)
T cd04105          52 LVDVPGHPKLRDKLLETLKNSAKGIVFVVDS----------ATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDL  121 (203)
T ss_pred             EEECCCCHHHHHHHHHHHhccCCEEEEEEEC----------ccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhh
Confidence            699999999999999999999 999999999          555 7788888888777654322  57899999999999


Q ss_pred             hhH
Q psy12099         77 LAE   79 (174)
Q Consensus        77 ~~~   79 (174)
                      +.+
T Consensus       122 ~~a  124 (203)
T cd04105         122 FTA  124 (203)
T ss_pred             ccc
Confidence            754

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.27  E-value=2.1e-11  Score=86.86  Aligned_cols=105  Identities=23%  Similarity=0.177  Sum_probs=73.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCc-chHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQ-NRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~-~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +||++|++.++.+|..+++.+.++++++|++          .. .++.... .+...+..... .+.|+++++||+|+..
T Consensus        54 ~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~----------~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~  122 (161)
T TIGR00231        54 LLDTAGQEDYRAIRRLYYRAVESSLRVFDIV----------ILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRD  122 (161)
T ss_pred             EEECCCcccchHHHHHHHhhhhEEEEEEEEe----------eeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCc
Confidence            5999999999999999999999999999994          33 4555544 44444433322 2789999999999965


Q ss_pred             HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099         79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND  158 (174)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~  158 (174)
                      ....   ......++.                                         .....++++||+++.++.++|+.
T Consensus       123 ~~~~---~~~~~~~~~-----------------------------------------~~~~~~~~~sa~~~~gv~~~~~~  158 (161)
T TIGR00231       123 AKLK---THVAFLFAK-----------------------------------------LNGEPIIPLSAETGKNIDSAFKI  158 (161)
T ss_pred             chhh---HHHHHHHhh-----------------------------------------ccCCceEEeecCCCCCHHHHHHH
Confidence            4311   111111111                                         11234779999999999999988


Q ss_pred             HH
Q psy12099        159 CR  160 (174)
Q Consensus       159 ~~  160 (174)
                      +.
T Consensus       159 l~  160 (161)
T TIGR00231       159 VE  160 (161)
T ss_pred             hh
Confidence            74

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.24  E-value=2.9e-11  Score=88.54  Aligned_cols=105  Identities=12%  Similarity=0.160  Sum_probs=66.5

Q ss_pred             CeeCCCCchhhhhHh----hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCch
Q psy12099          1 MFDVGGQRDERRKWI----QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDL   76 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~----~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl   76 (174)
                      +|||+|+...+..|.    ..+++++++|+|+|.          ++..++..  .|+..+     ..+.|+++++||+|+
T Consensus        41 ~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~----------~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl  103 (158)
T PRK15467         41 DIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA----------NDPESRLP--AGLLDI-----GVSKRQIAVISKTDM  103 (158)
T ss_pred             cccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC----------CCcccccC--HHHHhc-----cCCCCeEEEEEcccc
Confidence            599999843333332    237899999999999          44433211  233332     135799999999998


Q ss_pred             hhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHH
Q psy12099         77 LAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVF  156 (174)
Q Consensus        77 ~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f  156 (174)
                      .....                                 +.+.+++...           .-...++++||++++||.++|
T Consensus       104 ~~~~~---------------------------------~~~~~~~~~~-----------~~~~p~~~~Sa~~g~gi~~l~  139 (158)
T PRK15467        104 PDADV---------------------------------AATRKLLLET-----------GFEEPIFELNSHDPQSVQQLV  139 (158)
T ss_pred             CcccH---------------------------------HHHHHHHHHc-----------CCCCCEEEEECCCccCHHHHH
Confidence            54211                                 1122222110           111467889999999999999


Q ss_pred             HHHHHHHHHh
Q psy12099        157 NDCRDIIQRM  166 (174)
Q Consensus       157 ~~~~~~i~~~  166 (174)
                      +.+.+.+.+.
T Consensus       140 ~~l~~~~~~~  149 (158)
T PRK15467        140 DYLASLTKQE  149 (158)
T ss_pred             HHHHHhchhh
Confidence            9998876543

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.24  E-value=6.1e-11  Score=87.03  Aligned_cols=109  Identities=18%  Similarity=0.138  Sum_probs=71.9

Q ss_pred             CeeCCCCc----hhhhhH---hhhhcCCCEEEEEEeCCCccccccCCCCc------chHHHHHHHHHHHHcCCC------
Q psy12099          1 MFDVGGQR----DERRKW---IQCFNDVTAIIFVTACSSYNMVLREDPTQ------NRLRESLDLFKSIWNNRW------   61 (174)
Q Consensus         1 iwD~~Gq~----~~r~~w---~~y~~~~~~ii~v~d~s~~~~~~~e~~~~------~~~~~~~~~~~~i~~~~~------   61 (174)
                      +|||+|+.    ..+.++   ..++++++++++|+|.          .+.      +++.+...|...+.....      
T Consensus        48 i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (176)
T cd01881          48 VADIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDA----------SEDDDIGGVDPLEDYEILNAELKLYDLETILGL  117 (176)
T ss_pred             EEeccccchhhhcCCCccHHHHHHHhccCEEEEEEec----------cCCccccccCHHHHHHHHHHHHHHhhhhhHHHH
Confidence            69999973    223333   3457889999999999          555      566666666666654332      


Q ss_pred             CCCCcEEEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceee
Q psy12099         62 LRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYP  141 (174)
Q Consensus        62 ~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~  141 (174)
                      ..+.|+++++||+|+......      ..+                             .....        .......+
T Consensus       118 ~~~~p~ivv~NK~Dl~~~~~~------~~~-----------------------------~~~~~--------~~~~~~~~  154 (176)
T cd01881         118 LTAKPVIYVLNKIDLDDAEEL------EEE-----------------------------LVREL--------ALEEGAEV  154 (176)
T ss_pred             HhhCCeEEEEEchhcCchhHH------HHH-----------------------------HHHHH--------hcCCCCCE
Confidence            247899999999999653211      000                             00000        11223557


Q ss_pred             eecccccchhHHHHHHHHHHH
Q psy12099        142 HFTCAVDTENIRRVFNDCRDI  162 (174)
Q Consensus       142 ~~tsA~d~~~i~~~f~~~~~~  162 (174)
                      +.+||+++.+++++++.+...
T Consensus       155 ~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         155 VPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             EEEehhhhcCHHHHHHHHHhh
Confidence            899999999999999988654

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.23  E-value=3.1e-11  Score=105.20  Aligned_cols=63  Identities=13%  Similarity=0.221  Sum_probs=48.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +|||+|++.|...|..++++++++|+|+|.          ++.........|.. ...    .+.|+++++||+|+..
T Consensus        74 liDTPG~~dF~~~v~~~l~~aD~aILVvDa----------t~g~~~qt~~~~~~-~~~----~~ipiIiViNKiDl~~  136 (595)
T TIGR01393        74 LIDTPGHVDFSYEVSRSLAACEGALLLVDA----------AQGIEAQTLANVYL-ALE----NDLEIIPVINKIDLPS  136 (595)
T ss_pred             EEECCCcHHHHHHHHHHHHhCCEEEEEecC----------CCCCCHhHHHHHHH-HHH----cCCCEEEEEECcCCCc
Confidence            699999999999999999999999999999          44433333333332 222    3679999999999864

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.22  E-value=5.7e-11  Score=87.65  Aligned_cols=105  Identities=14%  Similarity=0.127  Sum_probs=73.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ++||.||+||+.+|..+++++.++|+++|.          +....+ +....++-+...   ..+|++++.||+||+...
T Consensus        72 LfgtPGq~RF~fm~~~l~~ga~gaivlVDs----------s~~~~~-~a~~ii~f~~~~---~~ip~vVa~NK~DL~~a~  137 (187)
T COG2229          72 LFGTPGQERFKFMWEILSRGAVGAIVLVDS----------SRPITF-HAEEIIDFLTSR---NPIPVVVAINKQDLFDAL  137 (187)
T ss_pred             EecCCCcHHHHHHHHHHhCCcceEEEEEec----------CCCcch-HHHHHHHHHhhc---cCCCEEEEeeccccCCCC
Confidence            579999999999999999999999999999          666666 444444433211   128999999999998764


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      -+   +.+.++                          .+.              ....+.+..++|+++++.++.+..+.
T Consensus       138 pp---e~i~e~--------------------------l~~--------------~~~~~~vi~~~a~e~~~~~~~L~~ll  174 (187)
T COG2229         138 PP---EKIREA--------------------------LKL--------------ELLSVPVIEIDATEGEGARDQLDVLL  174 (187)
T ss_pred             CH---HHHHHH--------------------------HHh--------------ccCCCceeeeecccchhHHHHHHHHH
Confidence            21   222221                          111              11346777889999988888777665


Q ss_pred             HH
Q psy12099        161 DI  162 (174)
Q Consensus       161 ~~  162 (174)
                      ..
T Consensus       175 ~~  176 (187)
T COG2229         175 LK  176 (187)
T ss_pred             hh
Confidence            43

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.22  E-value=6e-11  Score=96.63  Aligned_cols=112  Identities=13%  Similarity=0.142  Sum_probs=71.5

Q ss_pred             CeeCCCCch-------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC-CCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRD-------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN-RWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~-------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~-~~~~~~~iilv~N   72 (174)
                      ||||+|+..       ....|..+++.++++|+|+|+++.+       ..+.++....|.+++... +.+.+.|++||+|
T Consensus       209 i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~-------~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~N  281 (329)
T TIGR02729       209 IADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLD-------GRDPIEDYEIIRNELKKYSPELAEKPRIVVLN  281 (329)
T ss_pred             EEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCcccc-------ccCHHHHHHHHHHHHHHhhhhhccCCEEEEEe
Confidence            699999842       3344555567899999999994221       114555555555555332 2345789999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI  152 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i  152 (174)
                      |+|+..+...                                +...+.+.+.            ..+.++.+||+++++|
T Consensus       282 K~DL~~~~~~--------------------------------~~~~~~l~~~------------~~~~vi~iSAktg~GI  317 (329)
T TIGR02729       282 KIDLLDEEEL--------------------------------AELLKELKKA------------LGKPVFPISALTGEGL  317 (329)
T ss_pred             CccCCChHHH--------------------------------HHHHHHHHHH------------cCCcEEEEEccCCcCH
Confidence            9998654211                                0111111110            1145778999999999


Q ss_pred             HHHHHHHHHHH
Q psy12099        153 RRVFNDCRDII  163 (174)
Q Consensus       153 ~~~f~~~~~~i  163 (174)
                      +++|+++.+.+
T Consensus       318 ~eL~~~I~~~l  328 (329)
T TIGR02729       318 DELLYALAELL  328 (329)
T ss_pred             HHHHHHHHHHh
Confidence            99999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.22  E-value=5.1e-11  Score=103.48  Aligned_cols=136  Identities=8%  Similarity=-0.036  Sum_probs=77.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||+.|+.+|..+++.++++|+|+|.++=       ....++    +.+..+ ..   .+.|+++++||+|+....
T Consensus        73 ~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g-------~~~qt~----e~i~~l-~~---~~vpiIVv~NK~Dl~~~~  137 (590)
T TIGR00491        73 FIDTPGHEAFTNLRKRGGALADLAILIVDINEG-------FKPQTQ----EALNIL-RM---YKTPFVVAANKIDRIPGW  137 (590)
T ss_pred             EEECCCcHhHHHHHHHHHhhCCEEEEEEECCcC-------CCHhHH----HHHHHH-HH---cCCCEEEEEECCCccchh
Confidence            599999999999999999999999999999310       012222    222222 11   368999999999997432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhc------CCCCCcceeeeecccccchhHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTA------SGDGKHYCYPHFTCAVDTENIRR  154 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~------~~~~~~~~~~~~tsA~d~~~i~~  154 (174)
                      ..   ..-..++        .++|+.+......+++....+...+....-.      ...-...+.+..+||++|+|+.+
T Consensus       138 ~~---~~~~~f~--------e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGide  206 (590)
T TIGR00491       138 RS---HEGRPFM--------ESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPE  206 (590)
T ss_pred             hh---ccCchHH--------HHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhH
Confidence            11   0001111        1122222122222222222222222211000      00112346788999999999999


Q ss_pred             HHHHHHHH
Q psy12099        155 VFNDCRDI  162 (174)
Q Consensus       155 ~f~~~~~~  162 (174)
                      +++++...
T Consensus       207 Ll~~l~~l  214 (590)
T TIGR00491       207 LLTMLAGL  214 (590)
T ss_pred             HHHHHHHH
Confidence            99887653

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd01878 HflX HflX subfamily

Probab=99.21  E-value=7.4e-11  Score=89.38  Aligned_cols=102  Identities=17%  Similarity=0.161  Sum_probs=68.3

Q ss_pred             CeeCCCC---------chhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEE
Q psy12099          1 MFDVGGQ---------RDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFL   71 (174)
Q Consensus         1 iwD~~Gq---------~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~   71 (174)
                      +|||+|+         +.++..+ ..+.+++++++|+|.          ++..++.....|... +......+.|+++|+
T Consensus        93 i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~----------~~~~~~~~~~~~~~~-l~~~~~~~~~viiV~  160 (204)
T cd01878          93 LTDTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDA----------SDPDYEEQIETVEKV-LKELGAEDIPMILVL  160 (204)
T ss_pred             EeCCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEEC----------CCCChhhHHHHHHHH-HHHcCcCCCCEEEEE
Confidence            6999998         3344443 346789999999999          566665554333333 333234568999999


Q ss_pred             eCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchh
Q psy12099         72 NKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTEN  151 (174)
Q Consensus        72 NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~  151 (174)
                      ||+|+..+...  .    ..                                          .......++++||+++.|
T Consensus       161 NK~Dl~~~~~~--~----~~------------------------------------------~~~~~~~~~~~Sa~~~~g  192 (204)
T cd01878         161 NKIDLLDDEEL--E----ER------------------------------------------LEAGRPDAVFISAKTGEG  192 (204)
T ss_pred             EccccCChHHH--H----HH------------------------------------------hhcCCCceEEEEcCCCCC
Confidence            99998654321  0    00                                          001224567999999999


Q ss_pred             HHHHHHHHHHH
Q psy12099        152 IRRVFNDCRDI  162 (174)
Q Consensus       152 i~~~f~~~~~~  162 (174)
                      +.++|+++.+.
T Consensus       193 i~~l~~~L~~~  203 (204)
T cd01878         193 LDELLEAIEEL  203 (204)
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd01889 SelB_euk SelB subfamily

Probab=99.21  E-value=2.3e-10  Score=86.08  Aligned_cols=115  Identities=15%  Similarity=0.122  Sum_probs=66.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+..+.+........++++|+|+|.+          +....... +.+. +...   .+.|+++++||+|+....
T Consensus        72 i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~----------~~~~~~~~-~~~~-~~~~---~~~~~iiv~NK~Dl~~~~  136 (192)
T cd01889          72 LVDCPGHASLIRTIIGGAQIIDLMLLVVDAT----------KGIQTQTA-ECLV-IGEI---LCKKLIVVLNKIDLIPEE  136 (192)
T ss_pred             EEECCCcHHHHHHHHHHHhhCCEEEEEEECC----------CCccHHHH-HHHH-HHHH---cCCCEEEEEECcccCCHH
Confidence            6999999654222222335678999999993          32221111 1111 1111   256999999999986422


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  .                          ...++..+.+...+...      ....+.++.+||+++.|+.++++++.
T Consensus       137 ~~--~--------------------------~~~~~~~~~l~~~~~~~------~~~~~~vi~iSa~~g~gi~~L~~~l~  182 (192)
T cd01889         137 ER--E--------------------------RKIEKMKKKLQKTLEKT------RFKNSPIIPVSAKPGGGEAELGKDLN  182 (192)
T ss_pred             HH--H--------------------------HHHHHHHHHHHHHHHhc------CcCCCCEEEEeccCCCCHHHHHHHHH
Confidence            11  0                          01122222222222211      11346678999999999999999998


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.|.
T Consensus       183 ~~~~  186 (192)
T cd01889         183 NLIV  186 (192)
T ss_pred             hccc
Confidence            8764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.20  E-value=1.2e-10  Score=97.73  Aligned_cols=110  Identities=13%  Similarity=0.234  Sum_probs=68.7

Q ss_pred             CeeCCCCchhhhhH-----------hhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099          1 MFDVGGQRDERRKW-----------IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL   69 (174)
Q Consensus         1 iwD~~Gq~~~r~~w-----------~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil   69 (174)
                      +|||+|+++.+..+           ..+++.++++|+|+|.          ++..+..+ ..++..+..    .+.|+++
T Consensus       224 liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~----------~~~~~~~~-~~~~~~~~~----~~~~iii  288 (429)
T TIGR03594       224 LIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDA----------TEGITEQD-LRIAGLILE----AGKALVI  288 (429)
T ss_pred             EEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEEC----------CCCccHHH-HHHHHHHHH----cCCcEEE
Confidence            69999987765443           3468899999999999          44433333 234444432    3689999


Q ss_pred             EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099         70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT  149 (174)
Q Consensus        70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~  149 (174)
                      ++||+|+......                               .+...+.+...+.        .-..+.++++||++|
T Consensus       289 v~NK~Dl~~~~~~-------------------------------~~~~~~~~~~~~~--------~~~~~~vi~~SA~~g  329 (429)
T TIGR03594       289 VVNKWDLVKDEKT-------------------------------REEFKKELRRKLP--------FLDFAPIVFISALTG  329 (429)
T ss_pred             EEECcccCCCHHH-------------------------------HHHHHHHHHHhcc--------cCCCCceEEEeCCCC
Confidence            9999999721100                               1111111211111        112256678899999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy12099        150 ENIRRVFNDCRDIIQ  164 (174)
Q Consensus       150 ~~i~~~f~~~~~~i~  164 (174)
                      .||.++|+++.+...
T Consensus       330 ~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       330 QGVDKLLDAIDEVYE  344 (429)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999988887654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.18  E-value=2.1e-10  Score=97.64  Aligned_cols=110  Identities=12%  Similarity=0.124  Sum_probs=69.8

Q ss_pred             CeeCCCC----------chhhhhH-hhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099          1 MFDVGGQ----------RDERRKW-IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL   69 (174)
Q Consensus         1 iwD~~Gq----------~~~r~~w-~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil   69 (174)
                      +|||+|+          +.++.+. ..++++++++|+|+|.          ++..+..+. .++..+..    .+.|++|
T Consensus       263 l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da----------~~~~s~~~~-~~~~~~~~----~~~piIi  327 (472)
T PRK03003        263 FVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDA----------SEPISEQDQ-RVLSMVIE----AGRALVL  327 (472)
T ss_pred             EEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeC----------CCCCCHHHH-HHHHHHHH----cCCCEEE
Confidence            6999996          4444443 3467899999999999          565555544 44555443    3689999


Q ss_pred             EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099         70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT  149 (174)
Q Consensus        70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~  149 (174)
                      |+||+|+..+...   ..+.                             +-+...+        .......++++||++|
T Consensus       328 V~NK~Dl~~~~~~---~~~~-----------------------------~~i~~~l--------~~~~~~~~~~~SAk~g  367 (472)
T PRK03003        328 AFNKWDLVDEDRR---YYLE-----------------------------REIDREL--------AQVPWAPRVNISAKTG  367 (472)
T ss_pred             EEECcccCChhHH---HHHH-----------------------------HHHHHhc--------ccCCCCCEEEEECCCC
Confidence            9999999642111   0000                             0011100        0111234578999999


Q ss_pred             hhHHHHHHHHHHHHHH
Q psy12099        150 ENIRRVFNDCRDIIQR  165 (174)
Q Consensus       150 ~~i~~~f~~~~~~i~~  165 (174)
                      .||+++|+.+.+.+.+
T Consensus       368 ~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        368 RAVDKLVPALETALES  383 (472)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999876643

>KOG0077|consensus

Probab=99.18  E-value=3e-11  Score=87.73  Aligned_cols=123  Identities=20%  Similarity=0.263  Sum_probs=92.1

Q ss_pred             eeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHH
Q psy12099          2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKV   81 (174)
Q Consensus         2 wD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~   81 (174)
                      +|+||+..-|+.|..||-.+++++|.+|.          -+.+|+.+++..++.++....+.++|+++++||.|.+....
T Consensus        69 ~DLGGH~qArr~wkdyf~~v~~iv~lvda----------~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~s  138 (193)
T KOG0077|consen   69 FDLGGHLQARRVWKDYFPQVDAIVYLVDA----------YDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAAS  138 (193)
T ss_pred             EccccHHHHHHHHHHHHhhhceeEeeeeh----------hhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCccc
Confidence            79999999999999999999999999999          89999999999999999998899999999999999987542


Q ss_pred             hccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHHH
Q psy12099         82 KAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRD  161 (174)
Q Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~~  161 (174)
                      +   .+++-.+.-++.       .+|.|..                  .......+++.++.+|...+.+--+.|.|+..
T Consensus       139 e---~~l~~~l~l~~~-------t~~~~~v------------------~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~q  190 (193)
T KOG0077|consen  139 E---DELRFHLGLSNF-------TTGKGKV------------------NLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQ  190 (193)
T ss_pred             H---HHHHHHHHHHHH-------hcccccc------------------cccCCCCCeEEEEEEEEEccCccceeeeehhh
Confidence            2   233222211110       0011100                  00013456788889999999888888887765


Q ss_pred             H
Q psy12099        162 I  162 (174)
Q Consensus       162 ~  162 (174)
                      .
T Consensus       191 y  191 (193)
T KOG0077|consen  191 Y  191 (193)
T ss_pred             h
Confidence            4

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.12  E-value=2.4e-10  Score=97.30  Aligned_cols=63  Identities=19%  Similarity=0.195  Sum_probs=45.4

Q ss_pred             CeeCCCCc--------hhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQR--------DERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~--------~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +|||+|++        .++..+..++++++++|||+|.          ++..+... ..+... +..   .+.|++||+|
T Consensus        90 l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~----------~~~~s~~~-~~i~~~-l~~---~~~piilV~N  154 (472)
T PRK03003         90 VVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDA----------TVGATATD-EAVARV-LRR---SGKPVILAAN  154 (472)
T ss_pred             EEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEEC----------CCCCCHHH-HHHHHH-HHH---cCCCEEEEEE
Confidence            69999987        3566788899999999999999          44433322 222322 222   4689999999


Q ss_pred             CCchhh
Q psy12099         73 KQDLLA   78 (174)
Q Consensus        73 K~Dl~~   78 (174)
                      |+|+..
T Consensus       155 K~Dl~~  160 (472)
T PRK03003        155 KVDDER  160 (472)
T ss_pred             CccCCc
Confidence            999853

>TIGR00436 era GTP-binding protein Era

Probab=99.12  E-value=6.1e-10  Score=88.33  Aligned_cols=135  Identities=15%  Similarity=0.073  Sum_probs=76.4

Q ss_pred             CeeCCCCchhh--------hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDER--------RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r--------~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +|||+|....+        +.+..+++++|++++|+|.          ++..+..   ..+...+..   .+.|+++++|
T Consensus        52 ~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~----------~~~~~~~---~~i~~~l~~---~~~p~ilV~N  115 (270)
T TIGR00436        52 FIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDS----------DQWNGDG---EFVLTKLQN---LKRPVVLTRN  115 (270)
T ss_pred             EEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEEC----------CCCCchH---HHHHHHHHh---cCCCEEEEEE
Confidence            59999985421        2245678999999999999          4444432   222222322   3689999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCC-CCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchh
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTR-YQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTEN  151 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~-~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~  151 (174)
                      |+|+......  ...+..+....+. ...+.||++|.|.++..+...++             ....++++.....+|...
T Consensus       116 K~Dl~~~~~~--~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~-------------l~~~~~~~~~~~~t~~~~  180 (270)
T TIGR00436       116 KLDNKFKDKL--LPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVH-------------LPEGPFRYPEDYVTDQPD  180 (270)
T ss_pred             CeeCCCHHHH--HHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHh-------------CCCCCCCCCCcccCCCCH
Confidence            9999643211  1122222222221 46889999998866554444433             223445555555555544


Q ss_pred             HHHHHHHHHHHHHHh
Q psy12099        152 IRRVFNDCRDIIQRM  166 (174)
Q Consensus       152 i~~~f~~~~~~i~~~  166 (174)
                      -..+=+-+++.++..
T Consensus       181 ~~~~~e~ire~~~~~  195 (270)
T TIGR00436       181 RFKISEIIREKIIRY  195 (270)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            333344445555443

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.12  E-value=1.8e-10  Score=90.28  Aligned_cols=57  Identities=19%  Similarity=0.254  Sum_probs=46.6

Q ss_pred             chhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcc-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          8 RDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQN-RLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         8 ~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~-~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      ++++.+.+.|+++++++++|+|+          +++. ++.....|+..+ ..   .++|++|++||+||..
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~----------~~p~~s~~~l~r~l~~~-~~---~~i~~vIV~NK~DL~~   81 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSA----------VLPELSLNQLDRFLVVA-EA---QNIEPIIVLNKIDLLD   81 (245)
T ss_pred             cccceEECcccccCCEEEEEEEC----------CCCCCCHHHHHHHHHHH-HH---CCCCEEEEEECcccCC
Confidence            78888999999999999999999          6555 777776776654 22   5789999999999964

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.09  E-value=2.4e-10  Score=99.35  Aligned_cols=109  Identities=11%  Similarity=0.141  Sum_probs=70.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||+.|..+|..+++.+|++|+|+|.          ++. ....+.+.+....    ..++|+++++||+|+....
T Consensus       139 ~iDTPGhe~F~~~r~rga~~aDiaILVVda----------~dg-v~~qT~e~i~~~~----~~~vPiIVviNKiDl~~~~  203 (587)
T TIGR00487       139 FLDTPGHEAFTSMRARGAKVTDIVVLVVAA----------DDG-VMPQTIEAISHAK----AANVPIIVAINKIDKPEAN  203 (587)
T ss_pred             EEECCCCcchhhHHHhhhccCCEEEEEEEC----------CCC-CCHhHHHHHHHHH----HcCCCEEEEEECcccccCC
Confidence            699999999999999999999999999998          321 2223333333321    2468999999999986421


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      .    ..+.+.+.+++                       +....          ......+..+||++|.||.++|+++.
T Consensus       204 ~----e~v~~~L~~~g-----------------------~~~~~----------~~~~~~~v~iSAktGeGI~eLl~~I~  246 (587)
T TIGR00487       204 P----DRVKQELSEYG-----------------------LVPED----------WGGDTIFVPVSALTGDGIDELLDMIL  246 (587)
T ss_pred             H----HHHHHHHHHhh-----------------------hhHHh----------cCCCceEEEEECCCCCChHHHHHhhh
Confidence            1    11111111111                       00000          01224567899999999999998886


Q ss_pred             H
Q psy12099        161 D  161 (174)
Q Consensus       161 ~  161 (174)
                      .
T Consensus       247 ~  247 (587)
T TIGR00487       247 L  247 (587)
T ss_pred             h
Confidence            4

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.09  E-value=3.6e-10  Score=98.64  Aligned_cols=63  Identities=17%  Similarity=0.177  Sum_probs=47.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +|||+|++.|...|..+++.++++|+|+|.          ++....... ..+.....    .+.|+++|+||+|+..
T Consensus        78 LiDTPGh~dF~~~v~~sl~~aD~aILVVDa----------s~gv~~qt~-~~~~~~~~----~~lpiIvViNKiDl~~  140 (600)
T PRK05433         78 LIDTPGHVDFSYEVSRSLAACEGALLVVDA----------SQGVEAQTL-ANVYLALE----NDLEIIPVLNKIDLPA  140 (600)
T ss_pred             EEECCCcHHHHHHHHHHHHHCCEEEEEEEC----------CCCCCHHHH-HHHHHHHH----CCCCEEEEEECCCCCc
Confidence            699999999999999999999999999999          343222222 22222222    3679999999999864

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.08  E-value=9.4e-11  Score=81.14  Aligned_cols=63  Identities=27%  Similarity=0.363  Sum_probs=51.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHH---HHHHHcCCCCCCCcEEEEEeCCc
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDL---FKSIWNNRWLRTISVILFLNKQD   75 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~---~~~i~~~~~~~~~~iilv~NK~D   75 (174)
                      +||++|++.+...|..++.+++++|+|||+          ++..++..+..+   +..+...  ..++|++|++||.|
T Consensus        54 ~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~----------s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D  119 (119)
T PF08477_consen   54 FWDFGGQEEFYSQHQFFLKKADAVILVYDL----------SDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD  119 (119)
T ss_dssp             EEEESSSHCHHCTSHHHHHHSCEEEEEEEC----------CGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred             EEecCccceecccccchhhcCcEEEEEEcC----------CChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence            599999999999999889999999999999          788888887444   5554332  34699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK15494 era GTPase Era; Provisional

Probab=99.08  E-value=4.8e-10  Score=91.76  Aligned_cols=132  Identities=11%  Similarity=0.130  Sum_probs=70.8

Q ss_pred             CeeCCCCc-hhhhhH-------hhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEE
Q psy12099          1 MFDVGGQR-DERRKW-------IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFL   71 (174)
Q Consensus         1 iwD~~Gq~-~~r~~w-------~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~   71 (174)
                      +|||+|+. .+..+-       ..++++++++|||+|.+          +  ++.+.. .++..+ ..   .+.|.+||+
T Consensus       104 ~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~----------~--s~~~~~~~il~~l-~~---~~~p~IlVi  167 (339)
T PRK15494        104 LYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSL----------K--SFDDITHNILDKL-RS---LNIVPIFLL  167 (339)
T ss_pred             EEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECC----------C--CCCHHHHHHHHHH-Hh---cCCCEEEEE
Confidence            69999994 222221       13478999999999983          2  222222 233333 22   245778899


Q ss_pred             eCCchhhHHHhccccchhhhhhccC--CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099         72 NKQDLLAEKVKAGKSRLEDYFQEFT--RYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT  149 (174)
Q Consensus        72 NK~Dl~~~~~~~~~~~l~~~~~~~~--~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~  149 (174)
                      ||+|+..+..    ..+.+++....  ....++||++|.|.++.++...++             ....+.++...-.+|.
T Consensus       168 NKiDl~~~~~----~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~-------------l~~~~~~~~~~~~td~  230 (339)
T PRK15494        168 NKIDIESKYL----NDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSK-------------AKISPWLYAEDDITDL  230 (339)
T ss_pred             EhhcCccccH----HHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHh-------------CCCCCCCCCCCCCCCC
Confidence            9999864321    23444443332  235678888887754444333332             2344555554444443


Q ss_pred             hhHHHH-HHHHHHHHHHh
Q psy12099        150 ENIRRV-FNDCRDIIQRM  166 (174)
Q Consensus       150 ~~i~~~-f~~~~~~i~~~  166 (174)
                       ..+.. =+-|++.++..
T Consensus       231 -~~~~~~~eiiRe~~~~~  247 (339)
T PRK15494        231 -PMRFIAAEITREQLFLN  247 (339)
T ss_pred             -CHHHHHHHHHHHHHHhh
Confidence             33333 33355555543

>KOG3883|consensus

Probab=99.08  E-value=9.2e-10  Score=79.18  Aligned_cols=111  Identities=14%  Similarity=0.132  Sum_probs=84.2

Q ss_pred             CeeCCCCchh-hhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDE-RRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~-r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ++||+|-..+ ..+-.|||+-+|+.++|||.          .+.++|+....+-..+-....-+.+||++++||.|+-+.
T Consensus        64 lyDTaGlq~~~~eLprhy~q~aDafVLVYs~----------~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p  133 (198)
T KOG3883|consen   64 LYDTAGLQGGQQELPRHYFQFADAFVLVYSP----------MDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP  133 (198)
T ss_pred             EeecccccCchhhhhHhHhccCceEEEEecC----------CCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence            5899998877 66788999999999999999          788888876555555544555567999999999999654


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...                              +.+-|..|             +++..+..++++|+|...+-+-|..+
T Consensus       134 ~~v------------------------------d~d~A~~W-------------a~rEkvkl~eVta~dR~sL~epf~~l  170 (198)
T KOG3883|consen  134 REV------------------------------DMDVAQIW-------------AKREKVKLWEVTAMDRPSLYEPFTYL  170 (198)
T ss_pred             hhc------------------------------CHHHHHHH-------------HhhhheeEEEEEeccchhhhhHHHHH
Confidence            322                              12234455             23345778899999999999999998


Q ss_pred             HHHHH
Q psy12099        160 RDIIQ  164 (174)
Q Consensus       160 ~~~i~  164 (174)
                      ...+-
T Consensus       171 ~~rl~  175 (198)
T KOG3883|consen  171 ASRLH  175 (198)
T ss_pred             HHhcc
Confidence            87654

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.08  E-value=3.5e-09  Score=79.46  Aligned_cols=112  Identities=16%  Similarity=0.255  Sum_probs=74.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ++|++|+..|......-.+.+|++|+|+|.          .+.-. ....+.+..+..    .+.|+++++||+|+....
T Consensus        74 ~iDtPG~~~f~~~~~~~~~~~D~ailvVda----------~~g~~-~~~~~~l~~~~~----~~~p~ivvlNK~D~~~~~  138 (188)
T PF00009_consen   74 LIDTPGHEDFIKEMIRGLRQADIAILVVDA----------NDGIQ-PQTEEHLKILRE----LGIPIIVVLNKMDLIEKE  138 (188)
T ss_dssp             EEEESSSHHHHHHHHHHHTTSSEEEEEEET----------TTBST-HHHHHHHHHHHH----TT-SEEEEEETCTSSHHH
T ss_pred             ecccccccceeecccceecccccceeeeec----------ccccc-cccccccccccc----cccceEEeeeeccchhhh
Confidence            579999999999888889999999999999          33222 233444444432    367899999999998544


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCC-cceeeeecccccchhHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGK-HYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~-~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ..                                 +..+-+...+.....   ... ..+.+..+||+.|.|+.++++.+
T Consensus       139 ~~---------------------------------~~~~~~~~~l~~~~~---~~~~~~~~vi~~Sa~~g~gi~~Ll~~l  182 (188)
T PF00009_consen  139 LE---------------------------------EIIEEIKEKLLKEYG---ENGEEIVPVIPISALTGDGIDELLEAL  182 (188)
T ss_dssp             HH---------------------------------HHHHHHHHHHHHHTT---STTTSTEEEEEEBTTTTBTHHHHHHHH
T ss_pred             HH---------------------------------HHHHHHHHHhccccc---cCccccceEEEEecCCCCCHHHHHHHH
Confidence            33                                 111111112211111   122 35788899999999999999988


Q ss_pred             HHHH
Q psy12099        160 RDII  163 (174)
Q Consensus       160 ~~~i  163 (174)
                      .+.+
T Consensus       183 ~~~~  186 (188)
T PF00009_consen  183 VELL  186 (188)
T ss_dssp             HHHS
T ss_pred             HHhC
Confidence            7654

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.07  E-value=3.4e-10  Score=92.95  Aligned_cols=66  Identities=18%  Similarity=0.200  Sum_probs=46.6

Q ss_pred             CeeCCCC---------chhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEE
Q psy12099          1 MFDVGGQ---------RDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFL   71 (174)
Q Consensus         1 iwD~~Gq---------~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~   71 (174)
                      +|||+|.         +.|++.+. ++.++|++|+|+|.          +++.+......| ..++......+.|+++|+
T Consensus       241 l~DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~----------s~~~~~~~~~~~-~~~L~~l~~~~~piIlV~  308 (351)
T TIGR03156       241 LTDTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDA----------SDPDREEQIEAV-EKVLEELGAEDIPQLLVY  308 (351)
T ss_pred             EEecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEEC----------CCCchHHHHHHH-HHHHHHhccCCCCEEEEE
Confidence            6999998         45555543 58899999999999          666655544332 233333233578999999


Q ss_pred             eCCchhh
Q psy12099         72 NKQDLLA   78 (174)
Q Consensus        72 NK~Dl~~   78 (174)
                      ||+|+..
T Consensus       309 NK~Dl~~  315 (351)
T TIGR03156       309 NKIDLLD  315 (351)
T ss_pred             EeecCCC
Confidence            9999854

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01894 EngA1 EngA1 subfamily

Probab=99.04  E-value=1.2e-09  Score=78.41  Aligned_cols=100  Identities=18%  Similarity=0.266  Sum_probs=64.7

Q ss_pred             CeeCCCCchhhh--------hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDERR--------KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r~--------~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +|||+|+..++.        .+..++++++++|+|+|.          .+...... .. +..++..   .+.|+++++|
T Consensus        49 i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~~~~~-~~-~~~~~~~---~~~piiiv~n  113 (157)
T cd01894          49 LIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDG----------REGLTPAD-EE-IAKYLRK---SKKPVILVVN  113 (157)
T ss_pred             EEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEec----------cccCCccH-HH-HHHHHHh---cCCCEEEEEE
Confidence            699999988654        455678899999999998          33222221 12 2222222   2489999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI  152 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i  152 (174)
                      |+|+......      .                                 ..+..+        ..-.+.++||+++.++
T Consensus       114 K~D~~~~~~~------~---------------------------------~~~~~~--------~~~~~~~~Sa~~~~gv  146 (157)
T cd01894         114 KVDNIKEEDE------A---------------------------------AEFYSL--------GFGEPIPISAEHGRGI  146 (157)
T ss_pred             CcccCChHHH------H---------------------------------HHHHhc--------CCCCeEEEecccCCCH
Confidence            9998654211      0                                 000000        0013568999999999


Q ss_pred             HHHHHHHHHH
Q psy12099        153 RRVFNDCRDI  162 (174)
Q Consensus       153 ~~~f~~~~~~  162 (174)
                      +++|+++.+.
T Consensus       147 ~~l~~~l~~~  156 (157)
T cd01894         147 GDLLDAILEL  156 (157)
T ss_pred             HHHHHHHHhh
Confidence            9999999865

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.03  E-value=3.4e-10  Score=87.13  Aligned_cols=70  Identities=17%  Similarity=0.133  Sum_probs=44.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~   77 (174)
                      +|||+|++.|...+....+.++++|+|+|.++=.   .+ ............+... .  .....|+++++||+|+.
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~---~~-~~~~~~~~~~~~~~~~-~--~~~~~~iiivvNK~Dl~  150 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGE---FE-AGFEKGGQTREHALLA-R--TLGVKQLIVAVNKMDDV  150 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCc---cc-cccccccchHHHHHHH-H--HcCCCeEEEEEEccccc
Confidence            6999999999888888888999999999994210   00 0001111222222222 2  12346899999999997

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.03  E-value=1.4e-09  Score=91.80  Aligned_cols=101  Identities=19%  Similarity=0.194  Sum_probs=64.9

Q ss_pred             CeeCCCCchhhhhH--------hhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDERRKW--------IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r~~w--------~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +|||+|++.+...+        ..++++++++|+|+|.          ++..+.+..  |+..+..    .+.|+++|+|
T Consensus       255 l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~----------s~~~s~~~~--~l~~~~~----~~~piIlV~N  318 (442)
T TIGR00450       255 LLDTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDA----------SQPLTKDDF--LIIDLNK----SKKPFILVLN  318 (442)
T ss_pred             EeeCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEEC----------CCCCChhHH--HHHHHhh----CCCCEEEEEE
Confidence            69999997654332        4688999999999999          555555443  5555432    3679999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEF  125 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f  125 (174)
                      |+|+...       +...+.+.++.+..++||++ .|..+.++...+.+.+.+
T Consensus       319 K~Dl~~~-------~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~~~  363 (442)
T TIGR00450       319 KIDLKIN-------SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINAFY  363 (442)
T ss_pred             CccCCCc-------chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence            9998643       11222233333345577776 466666666655555443

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.03  E-value=6.2e-10  Score=98.63  Aligned_cols=110  Identities=14%  Similarity=0.156  Sum_probs=71.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++.|..+|..+++.++++|+|+|..          +.. ...+.+.+..+.    ..++|+++++||+|+....
T Consensus       299 fiDTPGhe~F~~mr~rg~~~aDiaILVVDA~----------dGv-~~QT~E~I~~~k----~~~iPiIVViNKiDl~~~~  363 (742)
T CHL00189        299 FLDTPGHEAFSSMRSRGANVTDIAILIIAAD----------DGV-KPQTIEAINYIQ----AANVPIIVAINKIDKANAN  363 (742)
T ss_pred             EEECCcHHHHHHHHHHHHHHCCEEEEEEECc----------CCC-ChhhHHHHHHHH----hcCceEEEEEECCCccccC
Confidence            6999999999999999999999999999983          311 112223333322    2468999999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..    .+.+.+..++                       .+..          .....+.+..+||++|.||.++|+.+.
T Consensus       364 ~e----~v~~eL~~~~-----------------------ll~e----------~~g~~vpvv~VSAktG~GIdeLle~I~  406 (742)
T CHL00189        364 TE----RIKQQLAKYN-----------------------LIPE----------KWGGDTPMIPISASQGTNIDKLLETIL  406 (742)
T ss_pred             HH----HHHHHHHHhc-----------------------cchH----------hhCCCceEEEEECCCCCCHHHHHHhhh
Confidence            11    1111111111                       0000          001235677899999999999998886


Q ss_pred             HH
Q psy12099        161 DI  162 (174)
Q Consensus       161 ~~  162 (174)
                      ..
T Consensus       407 ~l  408 (742)
T CHL00189        407 LL  408 (742)
T ss_pred             hh
Confidence            54

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.03  E-value=8e-10  Score=93.56  Aligned_cols=128  Identities=18%  Similarity=0.221  Sum_probs=74.2

Q ss_pred             CeeCCCCchhhh--------hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDERR--------KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r~--------~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +|||+|++.+..        ....++++++++|+|+|.          ++..+..+. .++..      ..+.|+++|+|
T Consensus       267 l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~----------s~~~s~~~~-~~l~~------~~~~piiiV~N  329 (449)
T PRK05291        267 LIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDA----------SEPLTEEDD-EILEE------LKDKPVIVVLN  329 (449)
T ss_pred             EEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecC----------CCCCChhHH-HHHHh------cCCCCcEEEEE
Confidence            699999975432        123478999999999999          555554433 33332      34689999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI  152 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i  152 (174)
                      |+|+......      .   ........+.||++|.|.++..+...+.+.    ....   ....  ....++......+
T Consensus       330 K~DL~~~~~~------~---~~~~~~~i~iSAktg~GI~~L~~~L~~~l~----~~~~---~~~~--~~~~~~~R~~~~l  391 (449)
T PRK05291        330 KADLTGEIDL------E---EENGKPVIRISAKTGEGIDELREAIKELAF----GGFG---GNQE--GVFLTNARHLEAL  391 (449)
T ss_pred             hhhccccchh------h---hccCCceEEEEeeCCCCHHHHHHHHHHHHh----hccc---cccc--cceehHHHHHHHH
Confidence            9999653211      1   112233567888888885555444443332    1110   0001  1233555555666


Q ss_pred             HHHHHHHHHHH
Q psy12099        153 RRVFNDCRDII  163 (174)
Q Consensus       153 ~~~f~~~~~~i  163 (174)
                      +.+.+.+.+.+
T Consensus       392 ~~a~~~l~~~~  402 (449)
T PRK05291        392 ERALEHLERAL  402 (449)
T ss_pred             HHHHHHHHHHH
Confidence            66666665443

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.01  E-value=2e-09  Score=91.69  Aligned_cols=73  Identities=18%  Similarity=0.280  Sum_probs=43.0

Q ss_pred             CeeCCCCc----hhhhh---HhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC----------CCC
Q psy12099          1 MFDVGGQR----DERRK---WIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR----------WLR   63 (174)
Q Consensus         1 iwD~~Gq~----~~r~~---w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~----------~~~   63 (174)
                      ||||+|.-    ..+.+   ...+++.++++|+|+|+++..      +..+.+.+...+..++....          .+.
T Consensus       210 laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e------~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~  283 (500)
T PRK12296        210 VADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLE------PGRDPLSDIDALEAELAAYAPALDGDLGLGDLA  283 (500)
T ss_pred             EEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccc------cccCchhhHHHHHHHHHHhhhcccccchhhhhc
Confidence            69999952    22222   233567899999999995321      11233333323332332111          245


Q ss_pred             CCcEEEEEeCCchhhH
Q psy12099         64 TISVILFLNKQDLLAE   79 (174)
Q Consensus        64 ~~~iilv~NK~Dl~~~   79 (174)
                      +.|++|++||+|+...
T Consensus       284 ~kP~IVVlNKiDL~da  299 (500)
T PRK12296        284 ERPRLVVLNKIDVPDA  299 (500)
T ss_pred             CCCEEEEEECccchhh
Confidence            7899999999999754

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.01  E-value=1.4e-09  Score=97.15  Aligned_cols=109  Identities=13%  Similarity=0.137  Sum_probs=71.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++.|..+|..+++.+|++|+|+|.          ++. ....+.+.+...    ...++|+++++||+|+....
T Consensus       341 fiDTPGhe~F~~m~~rga~~aDiaILVVdA----------ddG-v~~qT~e~i~~a----~~~~vPiIVviNKiDl~~a~  405 (787)
T PRK05306        341 FLDTPGHEAFTAMRARGAQVTDIVVLVVAA----------DDG-VMPQTIEAINHA----KAAGVPIIVAINKIDKPGAN  405 (787)
T ss_pred             EEECCCCccchhHHHhhhhhCCEEEEEEEC----------CCC-CCHhHHHHHHHH----HhcCCcEEEEEECccccccC
Confidence            699999999999999999999999999999          332 122233333322    12468999999999996432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..    .+...+.+++                       ++...          ....+.++.+||++|.||.++|+++.
T Consensus       406 ~e----~V~~eL~~~~-----------------------~~~e~----------~g~~vp~vpvSAktG~GI~eLle~I~  448 (787)
T PRK05306        406 PD----RVKQELSEYG-----------------------LVPEE----------WGGDTIFVPVSAKTGEGIDELLEAIL  448 (787)
T ss_pred             HH----HHHHHHHHhc-----------------------ccHHH----------hCCCceEEEEeCCCCCCchHHHHhhh
Confidence            11    1111111111                       00000          01235678899999999999999886


Q ss_pred             H
Q psy12099        161 D  161 (174)
Q Consensus       161 ~  161 (174)
                      .
T Consensus       449 ~  449 (787)
T PRK05306        449 L  449 (787)
T ss_pred             h
Confidence            4

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.00  E-value=1.6e-09  Score=94.42  Aligned_cols=64  Identities=17%  Similarity=0.195  Sum_probs=46.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~~   79 (174)
                      +||++|+++|.+.+..++.+++++|+|+|.          ++. .+..+.+.+.. +..   .++| +++++||+|+..+
T Consensus        54 ~iDtPGhe~f~~~~~~g~~~aD~aILVVDa----------~~G-~~~qT~ehl~i-l~~---lgi~~iIVVlNK~Dlv~~  118 (581)
T TIGR00475        54 FIDVPGHEKFISNAIAGGGGIDAALLVVDA----------DEG-VMTQTGEHLAV-LDL---LGIPHTIVVITKADRVNE  118 (581)
T ss_pred             EEECCCHHHHHHHHHhhhccCCEEEEEEEC----------CCC-CcHHHHHHHHH-HHH---cCCCeEEEEEECCCCCCH
Confidence            699999999999999999999999999999          331 11222222222 221   2466 9999999999653

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.00  E-value=1.2e-09  Score=95.27  Aligned_cols=62  Identities=18%  Similarity=0.121  Sum_probs=44.8

Q ss_pred             CeeCCCCchhhhh------Hhhhhc--CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDERRK------WIQCFN--DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r~~------w~~y~~--~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +|||+|+.++...      +..|+.  +++++|+|+|.          ++.+   ....+..++.+    .+.|+++++|
T Consensus        45 lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDa----------t~le---r~l~l~~ql~~----~~~PiIIVlN  107 (591)
T TIGR00437        45 IVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDA----------SNLE---RNLYLTLQLLE----LGIPMILALN  107 (591)
T ss_pred             EEECCCccccCccchHHHHHHHHHhhcCCCEEEEEecC----------Ccch---hhHHHHHHHHh----cCCCEEEEEe
Confidence            6999999988654      556654  78999999999          4432   23444444433    3689999999


Q ss_pred             CCchhhH
Q psy12099         73 KQDLLAE   79 (174)
Q Consensus        73 K~Dl~~~   79 (174)
                      |+|+.++
T Consensus       108 K~Dl~~~  114 (591)
T TIGR00437       108 LVDEAEK  114 (591)
T ss_pred             hhHHHHh
Confidence            9998654

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.00  E-value=2.8e-09  Score=89.43  Aligned_cols=70  Identities=19%  Similarity=0.193  Sum_probs=45.1

Q ss_pred             CeeCCCCch----hhhh---HhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC-CCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRD----ERRK---WIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN-RWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~----~r~~---w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~-~~~~~~~iilv~N   72 (174)
                      +|||+|...    .+.+   |..+.+.++++|+|+|+++.+       ..+.+++...|.+++... +.+.+.|++|++|
T Consensus       210 laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~-------~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~N  282 (424)
T PRK12297        210 MADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSE-------GRDPIEDYEKINKELKLYNPRLLERPQIVVAN  282 (424)
T ss_pred             EEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccc-------cCChHHHHHHHHHHHhhhchhccCCcEEEEEe
Confidence            699999732    2223   334456799999999995321       224555555555554332 2345789999999


Q ss_pred             CCchh
Q psy12099         73 KQDLL   77 (174)
Q Consensus        73 K~Dl~   77 (174)
                      |+|+.
T Consensus       283 K~DL~  287 (424)
T PRK12297        283 KMDLP  287 (424)
T ss_pred             CCCCc
Confidence            99984

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.00  E-value=2.4e-09  Score=93.26  Aligned_cols=135  Identities=10%  Similarity=-0.029  Sum_probs=74.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||+.|+.+|..+++.++++|+|+|.++=       -...++    ..+..+ ..   .++|+++++||+|+....
T Consensus        75 ~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g-------~~~qt~----e~i~~~-~~---~~vpiIvviNK~D~~~~~  139 (586)
T PRK04004         75 FIDTPGHEAFTNLRKRGGALADIAILVVDINEG-------FQPQTI----EAINIL-KR---RKTPFVVAANKIDRIPGW  139 (586)
T ss_pred             EEECCChHHHHHHHHHhHhhCCEEEEEEECCCC-------CCHhHH----HHHHHH-HH---cCCCEEEEEECcCCchhh
Confidence            599999999999999999999999999999310       012222    222222 11   368999999999985321


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcC------CCCCcceeeeecccccchhHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTAS------GDGKHYCYPHFTCAVDTENIRR  154 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~------~~~~~~~~~~~tsA~d~~~i~~  154 (174)
                      .           ++++.....++++.+....+.+++...-+...+....-..      ..-...+.+..+||++++|+.+
T Consensus       140 ~-----------~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~d  208 (586)
T PRK04004        140 K-----------STEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPD  208 (586)
T ss_pred             h-----------hhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHH
Confidence            1           1111111112222111112222222222221111110000      0112346788999999999999


Q ss_pred             HHHHHHH
Q psy12099        155 VFNDCRD  161 (174)
Q Consensus       155 ~f~~~~~  161 (174)
                      +++.+..
T Consensus       209 Ll~~i~~  215 (586)
T PRK04004        209 LLMVLAG  215 (586)
T ss_pred             HHHHHHH
Confidence            9888754

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=98.98  E-value=1.2e-09  Score=91.86  Aligned_cols=65  Identities=20%  Similarity=0.214  Sum_probs=43.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchH--HHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRL--RESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~--~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      ||||+||+.|......++++++++|+|+|.+          +.+..  .....++ .++..  ....|+++++||+|+..
T Consensus        89 iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~----------~~~~~~~~~t~~~~-~~~~~--~~~~~iIVviNK~Dl~~  155 (426)
T TIGR00483        89 IVDCPGHRDFIKNMITGASQADAAVLVVAVG----------DGEFEVQPQTREHA-FLART--LGINQLIVAINKMDSVN  155 (426)
T ss_pred             EEECCCHHHHHHHHHhhhhhCCEEEEEEECC----------CCCcccCCchHHHH-HHHHH--cCCCeEEEEEEChhccC
Confidence            6999999998776666778999999999994          33211  1111111 12221  22358999999999963

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01895 EngA2 EngA2 subfamily

Probab=98.97  E-value=6.6e-09  Score=75.50  Aligned_cols=108  Identities=17%  Similarity=0.268  Sum_probs=65.5

Q ss_pred             CeeCCCCchhh----------h-hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099          1 MFDVGGQRDER----------R-KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL   69 (174)
Q Consensus         1 iwD~~Gq~~~r----------~-~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil   69 (174)
                      +|||+|+....          . ....++++++++|+|+|.          .+..+.. ...++..+..    .+.|+++
T Consensus        54 iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~----------~~~~~~~-~~~~~~~~~~----~~~~~ii  118 (174)
T cd01895          54 LIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDA----------TEGITEQ-DLRIAGLILE----EGKALVI  118 (174)
T ss_pred             EEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeC----------CCCcchh-HHHHHHHHHh----cCCCEEE
Confidence            69999975431          1 123467899999999999          4443322 2233333322    3579999


Q ss_pred             EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099         70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT  149 (174)
Q Consensus        70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~  149 (174)
                      ++||+|+......                              ..+...+.+.+.+.        ......++.+||+++
T Consensus       119 v~nK~Dl~~~~~~------------------------------~~~~~~~~~~~~~~--------~~~~~~~~~~Sa~~~  160 (174)
T cd01895         119 VVNKWDLVEKDSK------------------------------TMKEFKKEIRRKLP--------FLDYAPIVFISALTG  160 (174)
T ss_pred             EEeccccCCccHH------------------------------HHHHHHHHHHhhcc--------cccCCceEEEeccCC
Confidence            9999998654200                              01112222222111        011246778999999


Q ss_pred             hhHHHHHHHHHH
Q psy12099        150 ENIRRVFNDCRD  161 (174)
Q Consensus       150 ~~i~~~f~~~~~  161 (174)
                      .|+.++++.+..
T Consensus       161 ~~i~~~~~~l~~  172 (174)
T cd01895         161 QGVDKLFDAIDE  172 (174)
T ss_pred             CCHHHHHHHHHH
Confidence            999999998865

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.95  E-value=3.5e-09  Score=88.66  Aligned_cols=112  Identities=13%  Similarity=0.143  Sum_probs=69.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||+.|.+.|......++++|+|+|.+          +........+.+..+ ..  ....|+++++||+|+....
T Consensus        84 liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~----------~g~~~~qt~e~l~~l-~~--~gi~~iIVvvNK~Dl~~~~  150 (406)
T TIGR03680        84 FVDAPGHETLMATMLSGAALMDGALLVIAAN----------EPCPQPQTKEHLMAL-EI--IGIKNIVIVQNKIDLVSKE  150 (406)
T ss_pred             EEECCCHHHHHHHHHHHHHHCCEEEEEEECC----------CCccccchHHHHHHH-HH--cCCCeEEEEEEccccCCHH
Confidence            6999999999999998889999999999993          211112222222222 11  1234789999999986432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  ..                          .+++..+++...          ....+.+..+||+++.|+.++++.+.
T Consensus       151 ~~--~~--------------------------~~~~i~~~l~~~----------~~~~~~ii~vSA~~g~gi~~L~e~L~  192 (406)
T TIGR03680       151 KA--LE--------------------------NYEEIKEFVKGT----------VAENAPIIPVSALHNANIDALLEAIE  192 (406)
T ss_pred             HH--HH--------------------------HHHHHHhhhhhc----------ccCCCeEEEEECCCCCChHHHHHHHH
Confidence            11  00                          011122221110          01235567889999999998888887


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      ..+
T Consensus       193 ~~l  195 (406)
T TIGR03680       193 KFI  195 (406)
T ss_pred             HhC
Confidence            654

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=98.95  E-value=5.2e-09  Score=91.29  Aligned_cols=64  Identities=14%  Similarity=0.210  Sum_probs=52.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+|+..|...+..+++.++++|+|+|.          .+ ..+.....++..+..    .++|+++|+||+|+..+
T Consensus        68 lIDTPGh~DF~~ev~~~l~~aD~alLVVDa----------~~-G~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a  131 (594)
T TIGR01394        68 IVDTPGHADFGGEVERVLGMVDGVLLLVDA----------SE-GPMPQTRFVLKKALE----LGLKPIVVINKIDRPSA  131 (594)
T ss_pred             EEECCCHHHHHHHHHHHHHhCCEEEEEEeC----------CC-CCcHHHHHHHHHHHH----CCCCEEEEEECCCCCCc
Confidence            699999999999999999999999999999          33 234555667776654    35799999999998654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK11058 GTPase HflX; Provisional

Probab=98.95  E-value=4.8e-09  Score=88.25  Aligned_cols=67  Identities=16%  Similarity=0.138  Sum_probs=44.4

Q ss_pred             CeeCCCCchh--hhhHh------hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDE--RRKWI------QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~--r~~w~------~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +|||+|..+.  ..+|.      .++++++++|+|+|.          +++....... .+..++......+.|+++++|
T Consensus       249 l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDa----------S~~~~~e~l~-~v~~iL~el~~~~~pvIiV~N  317 (426)
T PRK11058        249 LADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDA----------ADVRVQENIE-AVNTVLEEIDAHEIPTLLVMN  317 (426)
T ss_pred             EEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeC----------CCccHHHHHH-HHHHHHHHhccCCCCEEEEEE
Confidence            6999998442  23333      346899999999999          5665544432 222233322234689999999


Q ss_pred             CCchhh
Q psy12099         73 KQDLLA   78 (174)
Q Consensus        73 K~Dl~~   78 (174)
                      |+|+..
T Consensus       318 KiDL~~  323 (426)
T PRK11058        318 KIDMLD  323 (426)
T ss_pred             cccCCC
Confidence            999854

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=98.93  E-value=5.4e-09  Score=74.93  Aligned_cols=96  Identities=16%  Similarity=0.112  Sum_probs=65.0

Q ss_pred             CeeCCCCchhhh--------hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDERR--------KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r~--------~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +|||+|...+..        ....++..++++++|+|+          ++..+......+..       ..+.|+++++|
T Consensus        53 i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~----------~~~~~~~~~~~~~~-------~~~~~vi~v~n  115 (157)
T cd04164          53 LIDTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDA----------SRGLDEEDLEILEL-------PADKPIIVVLN  115 (157)
T ss_pred             EEECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEEC----------CCCCCHHHHHHHHh-------hcCCCEEEEEE
Confidence            699999755421        122467799999999999          55554444332222       34689999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI  152 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i  152 (174)
                      |+|+.....     .      .                                       .......+.++||+++.|+
T Consensus       116 K~D~~~~~~-----~------~---------------------------------------~~~~~~~~~~~Sa~~~~~v  145 (157)
T cd04164         116 KSDLLPDSE-----L------L---------------------------------------SLLAGKPIIAISAKTGEGL  145 (157)
T ss_pred             chhcCCccc-----c------c---------------------------------------cccCCCceEEEECCCCCCH
Confidence            999865320     0      0                                       0112245678999999999


Q ss_pred             HHHHHHHHHHH
Q psy12099        153 RRVFNDCRDII  163 (174)
Q Consensus       153 ~~~f~~~~~~i  163 (174)
                      .++++++.+.+
T Consensus       146 ~~l~~~l~~~~  156 (157)
T cd04164         146 DELKEALLELA  156 (157)
T ss_pred             HHHHHHHHHhh
Confidence            99999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK10218 GTP-binding protein; Provisional

Probab=98.92  E-value=7.6e-09  Score=90.34  Aligned_cols=65  Identities=15%  Similarity=0.199  Sum_probs=49.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+..|...|..+++.++++|+|+|.          .+. -......++..+..    .+.|++++.||+|+....
T Consensus        72 liDTPG~~df~~~v~~~l~~aDg~ILVVDa----------~~G-~~~qt~~~l~~a~~----~gip~IVviNKiD~~~a~  136 (607)
T PRK10218         72 IVDTPGHADFGGEVERVMSMVDSVLLVVDA----------FDG-PMPQTRFVTKKAFA----YGLKPIVVINKVDRPGAR  136 (607)
T ss_pred             EEECCCcchhHHHHHHHHHhCCEEEEEEec----------ccC-ccHHHHHHHHHHHH----cCCCEEEEEECcCCCCCc
Confidence            699999999999999999999999999999          332 12233444554433    367889999999987543

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.91  E-value=6.6e-09  Score=87.50  Aligned_cols=61  Identities=23%  Similarity=0.288  Sum_probs=43.6

Q ss_pred             CeeCCCCch--------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchH-H-HHHHHHHHHHcCCCCCCCcEEEE
Q psy12099          1 MFDVGGQRD--------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRL-R-ESLDLFKSIWNNRWLRTISVILF   70 (174)
Q Consensus         1 iwD~~Gq~~--------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~-~-~~~~~~~~i~~~~~~~~~~iilv   70 (174)
                      +|||+|++.        ++..+..++++++++|||+|.          .+.-+. + +...|+..       .+.|++++
T Consensus        53 liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~----------~~~~~~~~~~~~~~l~~-------~~~piilv  115 (435)
T PRK00093         53 LIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDG----------RAGLTPADEEIAKILRK-------SNKPVILV  115 (435)
T ss_pred             EEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEEC----------CCCCCHHHHHHHHHHHH-------cCCcEEEE
Confidence            699999987        455677789999999999999          332222 1 22233322       26899999


Q ss_pred             EeCCchhh
Q psy12099         71 LNKQDLLA   78 (174)
Q Consensus        71 ~NK~Dl~~   78 (174)
                      +||+|+..
T Consensus       116 ~NK~D~~~  123 (435)
T PRK00093        116 VNKVDGPD  123 (435)
T ss_pred             EECccCcc
Confidence            99999643

>cd00880 Era_like Era (E

Probab=98.90  E-value=7.8e-09  Score=73.45  Aligned_cols=107  Identities=20%  Similarity=0.129  Sum_probs=69.1

Q ss_pred             CeeCCCCchhhh-------hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q psy12099          1 MFDVGGQRDERR-------KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNK   73 (174)
Q Consensus         1 iwD~~Gq~~~r~-------~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK   73 (174)
                      +||++|+.....       .+..+++.++++++|+|.          .+........ ++....    ..+.|+++++||
T Consensus        49 ~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~----------~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK  113 (163)
T cd00880          49 LIDTPGIDEAGGLGREREELARRVLERADLILFVVDA----------DLRADEEEEK-LLELLR----ERGKPVLLVLNK  113 (163)
T ss_pred             EEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeC----------CCCCCHHHHH-HHHHHH----hcCCeEEEEEEc
Confidence            699999877653       445588999999999999          4444433332 233322    347899999999


Q ss_pred             CchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHH
Q psy12099         74 QDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIR  153 (174)
Q Consensus        74 ~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~  153 (174)
                      +|+......      ...                          ..  ....   ..   .......++.+||+++.++.
T Consensus       114 ~D~~~~~~~------~~~--------------------------~~--~~~~---~~---~~~~~~~~~~~sa~~~~~v~  153 (163)
T cd00880         114 IDLLPEEEE------EEL--------------------------LE--LRLL---IL---LLLLGLPVIAVSALTGEGID  153 (163)
T ss_pred             cccCChhhH------HHH--------------------------HH--HHHh---hc---ccccCCceEEEeeeccCCHH
Confidence            998654211      000                          00  0000   00   12234677889999999999


Q ss_pred             HHHHHHHHH
Q psy12099        154 RVFNDCRDI  162 (174)
Q Consensus       154 ~~f~~~~~~  162 (174)
                      +++.++.+.
T Consensus       154 ~l~~~l~~~  162 (163)
T cd00880         154 ELREALIEA  162 (163)
T ss_pred             HHHHHHHhh
Confidence            999988764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK00093 GTP-binding protein Der; Reviewed

Probab=98.89  E-value=1.2e-08  Score=85.90  Aligned_cols=109  Identities=15%  Similarity=0.235  Sum_probs=66.9

Q ss_pred             CeeCCCCchhhhh-----------HhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099          1 MFDVGGQRDERRK-----------WIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL   69 (174)
Q Consensus         1 iwD~~Gq~~~r~~-----------w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil   69 (174)
                      +|||+|.++....           ...+++.++++|+|+|.          ++..+..+ ..++..+..    .+.|+++
T Consensus       225 lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~----------~~~~~~~~-~~i~~~~~~----~~~~~iv  289 (435)
T PRK00093        225 LIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDA----------TEGITEQD-LRIAGLALE----AGRALVI  289 (435)
T ss_pred             EEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeC----------CCCCCHHH-HHHHHHHHH----cCCcEEE
Confidence            5999997543322           13467899999999999          44433332 234444332    3579999


Q ss_pred             EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099         70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT  149 (174)
Q Consensus        70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~  149 (174)
                      ++||+|+..+...                                ++..+.+...+..        ...+.++++||+++
T Consensus       290 v~NK~Dl~~~~~~--------------------------------~~~~~~~~~~l~~--------~~~~~i~~~SA~~~  329 (435)
T PRK00093        290 VVNKWDLVDEKTM--------------------------------EEFKKELRRRLPF--------LDYAPIVFISALTG  329 (435)
T ss_pred             EEECccCCCHHHH--------------------------------HHHHHHHHHhccc--------ccCCCEEEEeCCCC
Confidence            9999999743211                                1111112222111        12256778999999


Q ss_pred             hhHHHHHHHHHHHHH
Q psy12099        150 ENIRRVFNDCRDIIQ  164 (174)
Q Consensus       150 ~~i~~~f~~~~~~i~  164 (174)
                      .||.++|+.+.+...
T Consensus       330 ~gv~~l~~~i~~~~~  344 (435)
T PRK00093        330 QGVDKLLEAIDEAYE  344 (435)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999988776543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.88  E-value=1.4e-08  Score=90.60  Aligned_cols=63  Identities=13%  Similarity=0.182  Sum_probs=43.7

Q ss_pred             CeeCCCCch----------hhhh-HhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099          1 MFDVGGQRD----------ERRK-WIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL   69 (174)
Q Consensus         1 iwD~~Gq~~----------~r~~-w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil   69 (174)
                      +|||+|+.+          +..+ ...+++.++++|+|+|.          ++..+..+. .++..+..    .+.|++|
T Consensus       502 liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDa----------t~~~s~~~~-~i~~~~~~----~~~piIi  566 (712)
T PRK09518        502 FIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDA----------SQPISEQDL-KVMSMAVD----AGRALVL  566 (712)
T ss_pred             EEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEEC----------CCCCCHHHH-HHHHHHHH----cCCCEEE
Confidence            699999642          2222 23457899999999999          555554443 34555433    3689999


Q ss_pred             EEeCCchhh
Q psy12099         70 FLNKQDLLA   78 (174)
Q Consensus        70 v~NK~Dl~~   78 (174)
                      |+||+|+..
T Consensus       567 V~NK~DL~~  575 (712)
T PRK09518        567 VFNKWDLMD  575 (712)
T ss_pred             EEEchhcCC
Confidence            999999964

>cd04168 TetM_like Tet(M)-like subfamily

Probab=98.86  E-value=2.3e-08  Score=77.98  Aligned_cols=63  Identities=19%  Similarity=0.263  Sum_probs=49.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +|||+|+..|...|..+++.++++|+|+|.+          +.-. .....+++.+..    .+.|+++++||+|+..
T Consensus        68 liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~----------~g~~-~~~~~~~~~~~~----~~~P~iivvNK~D~~~  130 (237)
T cd04168          68 LIDTPGHMDFIAEVERSLSVLDGAILVISAV----------EGVQ-AQTRILWRLLRK----LNIPTIIFVNKIDRAG  130 (237)
T ss_pred             EEeCCCccchHHHHHHHHHHhCeEEEEEeCC----------CCCC-HHHHHHHHHHHH----cCCCEEEEEECccccC
Confidence            6999999999999999999999999999993          3222 234455554432    3689999999999974

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.85  E-value=7.3e-09  Score=92.32  Aligned_cols=62  Identities=19%  Similarity=0.210  Sum_probs=43.4

Q ss_pred             CeeCCCCch--------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCc-chHHHHHHHHHHHHcCCCCCCCcEEEEE
Q psy12099          1 MFDVGGQRD--------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQ-NRLRESLDLFKSIWNNRWLRTISVILFL   71 (174)
Q Consensus         1 iwD~~Gq~~--------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~-~~~~~~~~~~~~i~~~~~~~~~~iilv~   71 (174)
                      +|||+|++.        +...+..+++.++++|||+|.+          +. ...+  ..+.+.+ ..   .+.|+++|+
T Consensus       327 liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~----------~~~~~~d--~~i~~~L-r~---~~~pvIlV~  390 (712)
T PRK09518        327 LVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQ----------VGLTSTD--ERIVRML-RR---AGKPVVLAV  390 (712)
T ss_pred             EEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECC----------CCCCHHH--HHHHHHH-Hh---cCCCEEEEE
Confidence            699999873        4566677899999999999993          21 1111  1233332 22   478999999


Q ss_pred             eCCchhh
Q psy12099         72 NKQDLLA   78 (174)
Q Consensus        72 NK~Dl~~   78 (174)
                      ||+|+..
T Consensus       391 NK~D~~~  397 (712)
T PRK09518        391 NKIDDQA  397 (712)
T ss_pred             ECccccc
Confidence            9999853

>PRK00089 era GTPase Era; Reviewed

Probab=98.82  E-value=2.9e-08  Score=79.42  Aligned_cols=101  Identities=19%  Similarity=0.259  Sum_probs=58.7

Q ss_pred             CeeCCCCchhh--------hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDER--------RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r--------~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +|||+|....+        ..+..++.++|++++|+|.+          +  .+.....++...+..   .+.|+++++|
T Consensus        57 ~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~----------~--~~~~~~~~i~~~l~~---~~~pvilVlN  121 (292)
T PRK00089         57 FVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDAD----------E--KIGPGDEFILEKLKK---VKTPVILVLN  121 (292)
T ss_pred             EEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCC----------C--CCChhHHHHHHHHhh---cCCCEEEEEE
Confidence            58999975432        23445678999999999994          3  111222333333332   3589999999


Q ss_pred             CCchhhH-HHhccccchhhhhhccC-CCCCCCCCCCCCCCChHHHHHH
Q psy12099         73 KQDLLAE-KVKAGKSRLEDYFQEFT-RYQTPLDATPDPGEDPIVIRAK  118 (174)
Q Consensus        73 K~Dl~~~-~~~~~~~~l~~~~~~~~-~~~~~~~a~~~~g~~~~~~~a~  118 (174)
                      |+|+... ...  ...++.+...++ ....+.||++|.|.++..+...
T Consensus       122 KiDl~~~~~~l--~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~  167 (292)
T PRK00089        122 KIDLVKDKEEL--LPLLEELSELMDFAEIVPISALKGDNVDELLDVIA  167 (292)
T ss_pred             CCcCCCCHHHH--HHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHH
Confidence            9999732 111  122333332222 2356788888888554444333

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.81  E-value=2.2e-08  Score=83.99  Aligned_cols=112  Identities=13%  Similarity=0.130  Sum_probs=63.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++.|..-...-...++++|+|+|.          ++..........+..+ ..  ....|+++++||+|+..+.
T Consensus        89 liDtPG~~~f~~~~~~~~~~~D~~llVVDa----------~~~~~~~~t~~~l~~l-~~--~~i~~iiVVlNK~Dl~~~~  155 (411)
T PRK04000         89 FVDAPGHETLMATMLSGAALMDGAILVIAA----------NEPCPQPQTKEHLMAL-DI--IGIKNIVIVQNKIDLVSKE  155 (411)
T ss_pred             EEECCCHHHHHHHHHHHHhhCCEEEEEEEC----------CCCCCChhHHHHHHHH-HH--cCCCcEEEEEEeeccccch
Confidence            699999998875433334456999999999          3321111112222222 11  1224789999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..      .                      +..++...++..          .....+.++.+||+++.|+.++++.+.
T Consensus       156 ~~------~----------------------~~~~~i~~~l~~----------~~~~~~~ii~vSA~~g~gI~~L~~~L~  197 (411)
T PRK04000        156 RA------L----------------------ENYEQIKEFVKG----------TVAENAPIIPVSALHKVNIDALIEAIE  197 (411)
T ss_pred             hH------H----------------------HHHHHHHHHhcc----------ccCCCCeEEEEECCCCcCHHHHHHHHH
Confidence            11      0                      001111122110          001234567899999999999998887


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       198 ~~l  200 (411)
T PRK04000        198 EEI  200 (411)
T ss_pred             HhC
Confidence            654

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.81  E-value=5.4e-08  Score=72.85  Aligned_cols=107  Identities=9%  Similarity=0.077  Sum_probs=63.4

Q ss_pred             CeeCCCC----------chhhhhHhhhhcCC---CEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE
Q psy12099          1 MFDVGGQ----------RDERRKWIQCFNDV---TAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV   67 (174)
Q Consensus         1 iwD~~Gq----------~~~r~~w~~y~~~~---~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i   67 (174)
                      ||||+|.          ++++.+...|++.+   +++++|+|.          +......+  .++...+..   .+.|+
T Consensus        74 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~----------~~~~~~~~--~~i~~~l~~---~~~~~  138 (196)
T PRK00454         74 LVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDS----------RHPLKELD--LQMIEWLKE---YGIPV  138 (196)
T ss_pred             EeCCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEec----------CCCCCHHH--HHHHHHHHH---cCCcE
Confidence            6999994          55666667777755   578888887          33222111  112222221   36799


Q ss_pred             EEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc
Q psy12099         68 ILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV  147 (174)
Q Consensus        68 ilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~  147 (174)
                      ++++||+|+......                                +.....+...+..         ....+..+||+
T Consensus       139 iiv~nK~Dl~~~~~~--------------------------------~~~~~~i~~~l~~---------~~~~~~~~Sa~  177 (196)
T PRK00454        139 LIVLTKADKLKKGER--------------------------------KKQLKKVRKALKF---------GDDEVILFSSL  177 (196)
T ss_pred             EEEEECcccCCHHHH--------------------------------HHHHHHHHHHHHh---------cCCceEEEEcC
Confidence            999999998653211                                0001111111110         12455689999


Q ss_pred             cchhHHHHHHHHHHHH
Q psy12099        148 DTENIRRVFNDCRDII  163 (174)
Q Consensus       148 d~~~i~~~f~~~~~~i  163 (174)
                      ++.|++++|+.+.+.+
T Consensus       178 ~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        178 KKQGIDELRAAIAKWL  193 (196)
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999887654

>cd04163 Era Era subfamily

Probab=98.80  E-value=1.2e-08  Score=73.31  Aligned_cols=105  Identities=20%  Similarity=0.286  Sum_probs=64.2

Q ss_pred             CeeCCCCchhh--------hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDER--------RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r--------~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +|||+|.....        ..+..++..++++++|+|.+          +.  +.....++...+..   .+.|+++++|
T Consensus        55 liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~----------~~--~~~~~~~~~~~~~~---~~~~~iiv~n  119 (168)
T cd04163          55 FVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDAS----------EP--IGEGDEFILELLKK---SKTPVILVLN  119 (168)
T ss_pred             EEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECC----------Cc--cCchHHHHHHHHHH---hCCCEEEEEE
Confidence            59999975433        34456788999999999994          33  11112222222222   1579999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI  152 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i  152 (174)
                      |+|+......     +.                          +....+..           ......+..+|++++.++
T Consensus       120 K~Dl~~~~~~-----~~--------------------------~~~~~~~~-----------~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163         120 KIDLVKDKED-----LL--------------------------PLLEKLKE-----------LGPFAEIFPISALKGENV  157 (168)
T ss_pred             chhccccHHH-----HH--------------------------HHHHHHHh-----------ccCCCceEEEEeccCCCh
Confidence            9998632111     11                          11111111           011245678999999999


Q ss_pred             HHHHHHHHHH
Q psy12099        153 RRVFNDCRDI  162 (174)
Q Consensus       153 ~~~f~~~~~~  162 (174)
                      +++|+.+.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=98.80  E-value=3e-08  Score=82.54  Aligned_cols=111  Identities=13%  Similarity=0.176  Sum_probs=64.3

Q ss_pred             CeeCCCCchh-------hhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC-CCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDE-------RRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN-RWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~-------r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~-~~~~~~~iilv~N   72 (174)
                      ++||+|.-.-       ......+++.++++++|+|++..+       ..+.+.+...|.+.+... +.+.+.|++|++|
T Consensus       211 ~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~-------~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlN  283 (390)
T PRK12298        211 VADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPID-------GSDPVENARIIINELEKYSPKLAEKPRWLVFN  283 (390)
T ss_pred             EEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCccc-------ccChHHHHHHHHHHHHhhhhhhcCCCEEEEEe
Confidence            5899997431       112234578999999999994321       334555555565655432 2345789999999


Q ss_pred             CCchhhHHHhccccchhhhhhccC--CCCCCCCCCCCCCCChHHHHHHHH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFT--RYQTPLDATPDPGEDPIVIRAKYF  120 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~--~~~~~~~a~~~~g~~~~~~~a~~~  120 (174)
                      |+|+..+...  ...+..+...++  ....+.||+++.|.++..+...++
T Consensus       284 KiDl~~~~el--~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~  331 (390)
T PRK12298        284 KIDLLDEEEA--EERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTF  331 (390)
T ss_pred             CCccCChHHH--HHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHH
Confidence            9999653211  122223322222  134667777777755444444433

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.79  E-value=2.3e-08  Score=84.19  Aligned_cols=65  Identities=20%  Similarity=0.244  Sum_probs=41.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchH-HHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRL-RESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~-~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +|||+|++.|.+......+.++++|+|+|.+          +...+ ......+.. +..  ....|+++++||+|+..
T Consensus        88 liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~----------~~~~~~~~~~~~~~~-~~~--~~~~~iivviNK~Dl~~  153 (425)
T PRK12317         88 IVDCPGHRDFVKNMITGASQADAAVLVVAAD----------DAGGVMPQTREHVFL-ART--LGINQLIVAINKMDAVN  153 (425)
T ss_pred             EEECCCcccchhhHhhchhcCCEEEEEEEcc----------cCCCCCcchHHHHHH-HHH--cCCCeEEEEEEcccccc
Confidence            6999999887655455568999999999994          21111 112222222 221  12347999999999964

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=98.78  E-value=4.6e-08  Score=75.93  Aligned_cols=118  Identities=22%  Similarity=0.339  Sum_probs=71.3

Q ss_pred             CeeCCCCchhhh-----hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC--CCCCCCcEEEEEeC
Q psy12099          1 MFDVGGQRDERR-----KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN--RWLRTISVILFLNK   73 (174)
Q Consensus         1 iwD~~Gq~~~r~-----~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~--~~~~~~~iilv~NK   73 (174)
                      |||.|||..+-.     .....|+++.++|||+|+          .+.+ +.+.+..+...+..  ...+++.+.++..|
T Consensus        52 iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~----------qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK  120 (232)
T PF04670_consen   52 IWDCPGQDDFMENYFNSQREEIFSNVGVLIYVFDA----------QSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHK  120 (232)
T ss_dssp             EEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEEET----------T-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-
T ss_pred             EEEcCCccccccccccccHHHHHhccCEEEEEEEc----------cccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEee
Confidence            699999976543     357789999999999999          4332 45555555554433  12468899999999


Q ss_pred             CchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHH
Q psy12099         74 QDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIR  153 (174)
Q Consensus        74 ~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~  153 (174)
                      +|+..+...  .                          +.+....+-+.+.-.+...      ..+.+|.||--| ..+-
T Consensus       121 ~D~l~~~~r--~--------------------------~~~~~~~~~i~~~~~~~~~------~~~~~~~TSI~D-~Sly  165 (232)
T PF04670_consen  121 MDLLSEDER--E--------------------------EIFRDIQQRIRDELEDLGI------EDITFFLTSIWD-ESLY  165 (232)
T ss_dssp             CCCS-HHHH--H--------------------------HHHHHHHHHHHHHHHHTT-------TSEEEEEE-TTS-THHH
T ss_pred             cccCCHHHH--H--------------------------HHHHHHHHHHHHHhhhccc------cceEEEeccCcC-cHHH
Confidence            999755432  1                          0122222223322222211      258899999999 5788


Q ss_pred             HHHHHHHHHHH
Q psy12099        154 RVFNDCRDIIQ  164 (174)
Q Consensus       154 ~~f~~~~~~i~  164 (174)
                      ++|..|...++
T Consensus       166 ~A~S~Ivq~Li  176 (232)
T PF04670_consen  166 EAWSKIVQKLI  176 (232)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHHHc
Confidence            88887776654

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG0090|consensus

Probab=98.78  E-value=8.8e-09  Score=77.96  Aligned_cols=139  Identities=19%  Similarity=0.240  Sum_probs=83.6

Q ss_pred             CeeCCCCchhhhhHhhhhc---CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC--CCCCCcEEEEEeCCc
Q psy12099          1 MFDVGGQRDERRKWIQCFN---DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR--WLRTISVILFLNKQD   75 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~---~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~--~~~~~~iilv~NK~D   75 (174)
                      +.|.+|+.+.|.+-..||.   .+.++|||+|.+.|         .....+..+.+-.++...  .-..+|++|+.||+|
T Consensus        86 LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f---------~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqD  156 (238)
T KOG0090|consen   86 LVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATF---------LKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQD  156 (238)
T ss_pred             EEeCCCcHHHHHHHHHHccccccceeEEEEEecccc---------chhhHHHHHHHHHHHHhhccccCCCCEEEEecchh
Confidence            4699999999999999998   79999999999855         334456666666665543  245689999999999


Q ss_pred             hhhHHHhcc-ccchhhhhhc----cC---CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc
Q psy12099         76 LLAEKVKAG-KSRLEDYFQE----FT---RYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV  147 (174)
Q Consensus        76 l~~~~~~~~-~~~l~~~~~~----~~---~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~  147 (174)
                      ++.++-..- ...+++-...    -.   .......|    ....+..+...|   +|..+.      ...+.+-++|++
T Consensus       157 l~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~----~~~tlg~~g~dF---~fs~l~------~~~V~F~e~S~~  223 (238)
T KOG0090|consen  157 LFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIA----KDFTLGKEGEDF---KFSHLE------DQKVTFAEASAK  223 (238)
T ss_pred             hhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccc----cccccccccccc---chhhcc------cceeEEeecccC
Confidence            986542100 0111111000    00   00000000    011111222333   343332      245788899999


Q ss_pred             cchhHHHHHHHHHHH
Q psy12099        148 DTENIRRVFNDCRDI  162 (174)
Q Consensus       148 d~~~i~~~f~~~~~~  162 (174)
                      ++ +|.+.-+|+++.
T Consensus       224 ~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  224 TG-EIDQWESWIREA  237 (238)
T ss_pred             cC-ChHHHHHHHHHh
Confidence            99 899988888764

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.77  E-value=3.8e-08  Score=75.08  Aligned_cols=64  Identities=17%  Similarity=0.179  Sum_probs=43.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +|||+|++.|...+...++.++++|+|+|.+          +.- .......+.. +..  ....++++++||+|+..
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~----------~~~-~~~~~~~~~~-~~~--~~~~~iIvviNK~D~~~  144 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDAR----------KGV-LEQTRRHSYI-LSL--LGIRHVVVAVNKMDLVD  144 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECC----------CCc-cHhHHHHHHH-HHH--cCCCcEEEEEEchhccc
Confidence            6999999998877888899999999999993          221 1112222222 221  12246788999999863

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.76  E-value=3.1e-08  Score=86.80  Aligned_cols=63  Identities=14%  Similarity=0.230  Sum_probs=43.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~   78 (174)
                      +|||+|+++|.+.....+.++|++|+|+|.          .+ .-.....+.+.- +..   .++| +++++||+|+..
T Consensus        55 ~IDtPGhe~fi~~m~~g~~~~D~~lLVVda----------~e-g~~~qT~ehl~i-l~~---lgi~~iIVVlNKiDlv~  118 (614)
T PRK10512         55 FIDVPGHEKFLSNMLAGVGGIDHALLVVAC----------DD-GVMAQTREHLAI-LQL---TGNPMLTVALTKADRVD  118 (614)
T ss_pred             EEECCCHHHHHHHHHHHhhcCCEEEEEEEC----------CC-CCcHHHHHHHHH-HHH---cCCCeEEEEEECCccCC
Confidence            699999999977667778999999999998          32 112223333322 221   1344 679999999964

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=98.73  E-value=3.2e-08  Score=83.13  Aligned_cols=64  Identities=22%  Similarity=0.251  Sum_probs=44.5

Q ss_pred             CeeCCCC--------chhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQ--------RDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq--------~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      ||||+|.        +.++..+..++++++++|||+|.          .+.-...+  ..+..+++.   .+.|+++++|
T Consensus        51 liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~----------~~~~~~~d--~~i~~~l~~---~~~piilVvN  115 (429)
T TIGR03594        51 LIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDG----------REGLTPED--EEIAKWLRK---SGKPVILVAN  115 (429)
T ss_pred             EEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeC----------CCCCCHHH--HHHHHHHHH---hCCCEEEEEE
Confidence            6999996        66677788899999999999999          33222111  112222222   3679999999


Q ss_pred             CCchhhH
Q psy12099         73 KQDLLAE   79 (174)
Q Consensus        73 K~Dl~~~   79 (174)
                      |+|+...
T Consensus       116 K~D~~~~  122 (429)
T TIGR03594       116 KIDGKKE  122 (429)
T ss_pred             CccCCcc
Confidence            9998653

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04167 Snu114p Snu114p subfamily

Probab=98.72  E-value=1.3e-07  Score=72.29  Aligned_cols=62  Identities=15%  Similarity=0.205  Sum_probs=47.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~   77 (174)
                      +|||+|++.|...+..+++.++++|+|+|.+          +..+. ....++.....    .+.|+++++||+|+.
T Consensus        75 iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~----------~~~~~-~~~~~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167          75 IIDTPGHVNFMDEVAAALRLSDGVVLVVDVV----------EGVTS-NTERLIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             EEECCCCcchHHHHHHHHHhCCEEEEEEECC----------CCCCH-HHHHHHHHHHH----cCCCEEEEEECcccC
Confidence            6999999999999999999999999999993          33332 22334444322    348999999999985

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.69  E-value=4.2e-08  Score=72.90  Aligned_cols=95  Identities=11%  Similarity=0.202  Sum_probs=58.7

Q ss_pred             CeeCCCCc----------hhhhhHhhhhcC---CCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE
Q psy12099          1 MFDVGGQR----------DERRKWIQCFND---VTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV   67 (174)
Q Consensus         1 iwD~~Gq~----------~~r~~w~~y~~~---~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i   67 (174)
                      +|||+|..          .+..+-..|++.   ++++|+|+|.          ++.-+..+. ..+.. +..   .+.|+
T Consensus        68 liDtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~----------~~~~~~~~~-~~~~~-~~~---~~~pv  132 (179)
T TIGR03598        68 LVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDI----------RHPLKELDL-EMLEW-LRE---RGIPV  132 (179)
T ss_pred             EEeCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecC----------CCCCCHHHH-HHHHH-HHH---cCCCE
Confidence            69999953          233333466664   5799999998          332222221 22332 222   36899


Q ss_pred             EEEEeCCchhhHH-HhccccchhhhhhccC--CCCCCCCCCCCCCC
Q psy12099         68 ILFLNKQDLLAEK-VKAGKSRLEDYFQEFT--RYQTPLDATPDPGE  110 (174)
Q Consensus        68 ilv~NK~Dl~~~~-~~~~~~~l~~~~~~~~--~~~~~~~a~~~~g~  110 (174)
                      ++++||+|+..+. .......++++++...  ....++||++|+|.
T Consensus       133 iiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi  178 (179)
T TIGR03598       133 LIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGI  178 (179)
T ss_pred             EEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCC
Confidence            9999999997432 1111245666777653  25789999999985

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.68  E-value=1.1e-07  Score=87.08  Aligned_cols=63  Identities=11%  Similarity=0.096  Sum_probs=45.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +|||+||+.|..+....+..++++|+|+|.          ++.- ...+.+.+..+..    .++|+++++||+|+..
T Consensus       530 fiDTPGhe~F~~lr~~g~~~aDivlLVVDa----------~~Gi-~~qT~e~I~~lk~----~~iPiIVViNKiDL~~  592 (1049)
T PRK14845        530 FIDTPGHEAFTSLRKRGGSLADLAVLVVDI----------NEGF-KPQTIEAINILRQ----YKTPFVVAANKIDLIP  592 (1049)
T ss_pred             EEECCCcHHHHHHHHhhcccCCEEEEEEEC----------cccC-CHhHHHHHHHHHH----cCCCEEEEEECCCCcc
Confidence            699999999999888888999999999999          3310 0112222222222    2579999999999853

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.68  E-value=1.3e-08  Score=75.96  Aligned_cols=71  Identities=27%  Similarity=0.436  Sum_probs=51.2

Q ss_pred             CeeCCCCchhhhhHhh---hhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCc
Q psy12099          1 MFDVGGQRDERRKWIQ---CFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW--LRTISVILFLNKQD   75 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~---y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~--~~~~~iilv~NK~D   75 (174)
                      |.|+.|+++.|..-..   |..++.+||||+|.+         +....+.++.+.+-.++....  ...+|++|+.||+|
T Consensus        53 lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs---------~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~D  123 (181)
T PF09439_consen   53 LVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSS---------TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQD  123 (181)
T ss_dssp             EEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETT---------THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TT
T ss_pred             EEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCc---------cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcc
Confidence            4699999999985444   478999999999995         345567777777777766543  34689999999999


Q ss_pred             hhhHH
Q psy12099         76 LLAEK   80 (174)
Q Consensus        76 l~~~~   80 (174)
                      ++.++
T Consensus       124 l~~A~  128 (181)
T PF09439_consen  124 LFTAK  128 (181)
T ss_dssp             STT--
T ss_pred             ccccC
Confidence            98754

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=98.68  E-value=1.1e-07  Score=73.50  Aligned_cols=63  Identities=14%  Similarity=0.204  Sum_probs=48.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +|||+|++.|......+++.++++|+|+|+          .+.... .....+.....    .++|++|++||+|+..
T Consensus        77 iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~----------~~g~~~-~t~~~l~~~~~----~~~p~ilviNKiD~~~  139 (222)
T cd01885          77 LIDSPGHVDFSSEVTAALRLCDGALVVVDA----------VEGVCV-QTETVLRQALK----ERVKPVLVINKIDRLI  139 (222)
T ss_pred             EECCCCccccHHHHHHHHHhcCeeEEEEEC----------CCCCCH-HHHHHHHHHHH----cCCCEEEEEECCCcch
Confidence            599999999999999999999999999999          443322 23344444432    3579999999999863

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.64  E-value=3.6e-07  Score=72.62  Aligned_cols=63  Identities=14%  Similarity=0.159  Sum_probs=47.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +|||+|+..+...|..+++.++++|+|+|.+          +.-. ......+..+..    .+.|++++.||+|+.+
T Consensus        68 liDTPG~~df~~~~~~~l~~aD~ailVVDa~----------~g~~-~~t~~~~~~~~~----~~~p~ivviNK~D~~~  130 (270)
T cd01886          68 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAV----------AGVE-PQTETVWRQADR----YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             EEECCCcHHHHHHHHHHHHHcCEEEEEEECC----------CCCC-HHHHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence            5899999999999999999999999999994          2211 122344444332    3579999999999975

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01855 YqeH YqeH

Probab=98.63  E-value=6.8e-08  Score=72.53  Aligned_cols=52  Identities=19%  Similarity=0.099  Sum_probs=36.3

Q ss_pred             hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099         10 ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus        10 ~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      ++..+..|+++++++|+|+|+++.+         .+..      ..+..  ...+.|+++|+||+|+..
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~---------~~~~------~~l~~--~~~~~~~ilV~NK~Dl~~   75 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFP---------GSLI------PRLRL--FGGNNPVILVGNKIDLLP   75 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCC---------Cccc------hhHHH--hcCCCcEEEEEEchhcCC
Confidence            5889999999999999999995422         1111      11111  124679999999999864

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK13768 GTPase; Provisional

Probab=98.60  E-value=5.1e-08  Score=76.75  Aligned_cols=129  Identities=15%  Similarity=0.137  Sum_probs=70.5

Q ss_pred             CeeCCCCch---hhhhHhhhhcC-----CCEEEEEEeCCCccccccCCCCcchHHHH--HHHHHHHHcCCCCCCCcEEEE
Q psy12099          1 MFDVGGQRD---ERRKWIQCFND-----VTAIIFVTACSSYNMVLREDPTQNRLRES--LDLFKSIWNNRWLRTISVILF   70 (174)
Q Consensus         1 iwD~~Gq~~---~r~~w~~y~~~-----~~~ii~v~d~s~~~~~~~e~~~~~~~~~~--~~~~~~i~~~~~~~~~~iilv   70 (174)
                      |||++|+..   ++..|..+++.     ++++++++|.          ....+..+.  ..++......  ..+.|++++
T Consensus       101 ~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~----------~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v  168 (253)
T PRK13768        101 LVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDA----------VLAKTPSDFVSLLLLALSVQL--RLGLPQIPV  168 (253)
T ss_pred             EEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEech----------HHhCCHHHHHHHHHHHHHHHH--HcCCCEEEE
Confidence            699999966   46777666554     8899999999          333222221  1222211111  136899999


Q ss_pred             EeCCchhhHHHhccccchhhhhhc-------cCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeee
Q psy12099         71 LNKQDLLAEKVKAGKSRLEDYFQE-------FTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHF  143 (174)
Q Consensus        71 ~NK~Dl~~~~~~~~~~~l~~~~~~-------~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~  143 (174)
                      +||+|+..+...   ..+.+++.+       .....         |..   .....-+...+.+..       ....++.
T Consensus       169 ~nK~D~~~~~~~---~~~~~~l~~~~~~~~~l~~~~---------~~~---~~~~~~~~~~i~~~~-------~~~~vi~  226 (253)
T PRK13768        169 LNKADLLSEEEL---ERILKWLEDPEYLLEELKLEK---------GLQ---GLLSLELLRALEETG-------LPVRVIP  226 (253)
T ss_pred             EEhHhhcCchhH---HHHHHHHhCHHHHHHHHhccc---------chH---HHHHHHHHHHHHHHC-------CCCcEEE
Confidence            999998754211   112222221       11000         000   111111222222211       1235678


Q ss_pred             cccccchhHHHHHHHHHHHH
Q psy12099        144 TCAVDTENIRRVFNDCRDII  163 (174)
Q Consensus       144 tsA~d~~~i~~~f~~~~~~i  163 (174)
                      +||+++++++++.+++.+.+
T Consensus       227 iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        227 VSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             EECCCCcCHHHHHHHHHHHc
Confidence            99999999999999987654

>PRK13351 elongation factor G; Reviewed

Probab=98.60  E-value=6.8e-07  Score=79.54  Aligned_cols=65  Identities=15%  Similarity=0.210  Sum_probs=50.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+..|...|..+++.++++|+|+|.          ++..... ....|..+..    .++|+++++||+|+....
T Consensus        77 liDtPG~~df~~~~~~~l~~aD~~ilVvd~----------~~~~~~~-~~~~~~~~~~----~~~p~iiviNK~D~~~~~  141 (687)
T PRK13351         77 LIDTPGHIDFTGEVERSLRVLDGAVVVFDA----------VTGVQPQ-TETVWRQADR----YGIPRLIFINKMDRVGAD  141 (687)
T ss_pred             EEECCCcHHHHHHHHHHHHhCCEEEEEEeC----------CCCCCHH-HHHHHHHHHh----cCCCEEEEEECCCCCCCC
Confidence            699999999999999999999999999999          4443333 2344444332    268999999999998643

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.59  E-value=2e-07  Score=80.47  Aligned_cols=63  Identities=19%  Similarity=0.277  Sum_probs=47.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +|||+|+..|......+++.++++|+|+|.+          +.- ......+++...    ..++|+++++||+|+..
T Consensus        83 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~----------~gv-~~~t~~l~~~~~----~~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         83 LLDTPGHEDFSEDTYRTLTAVDSALMVIDAA----------KGV-EPQTRKLMEVCR----LRDTPIFTFINKLDRDG  145 (526)
T ss_pred             EEECCCchhhHHHHHHHHHHCCEEEEEEecC----------CCC-CHHHHHHHHHHH----hcCCCEEEEEECCcccc
Confidence            6999999999988888999999999999994          321 112334444332    24789999999999875

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.59  E-value=3.9e-07  Score=70.51  Aligned_cols=129  Identities=14%  Similarity=0.157  Sum_probs=69.7

Q ss_pred             CeeCCCCchhhhhHhhhhc--CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFN--DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~--~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +.||+|+++|.+-......  .++++++|+|.          .... ......++..+..    .+.|++++.||+|+..
T Consensus        88 liDtpG~~~~~~~~~~~~~~~~~D~~llVvda----------~~g~-~~~d~~~l~~l~~----~~ip~ivvvNK~D~~~  152 (224)
T cd04165          88 FIDLAGHERYLKTTLFGLTGYAPDYAMLVVAA----------NAGI-IGMTKEHLGLALA----LNIPVFVVVTKIDLAP  152 (224)
T ss_pred             EEECCCcHHHHHHHHHhhcccCCCEEEEEEEC----------CCCC-cHHHHHHHHHHHH----cCCCEEEEEECccccC
Confidence            4699999998665444443  68999999998          2221 2333344444332    2578999999999864


Q ss_pred             HH-HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099         79 EK-VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN  157 (174)
Q Consensus        79 ~~-~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~  157 (174)
                      +. +......+.+++...+....|...++.   ++....|.+.             .....+.++.+||.+|+|++.+..
T Consensus       153 ~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~---~~~~~~~~~~-------------~~~~~~pi~~vSavtg~Gi~~L~~  216 (224)
T cd04165         153 ANILQETLKDLKRILKVPGVRKLPVPVKSD---DDVVLAASNF-------------SSERIVPIFQVSNVTGEGLDLLHA  216 (224)
T ss_pred             HHHHHHHHHHHHHHhcCCCccccceeeecc---cceeehhhcC-------------CccccCcEEEeeCCCccCHHHHHH
Confidence            32 221112333333221111111111110   0001111111             223446788999999999999887


Q ss_pred             HHH
Q psy12099        158 DCR  160 (174)
Q Consensus       158 ~~~  160 (174)
                      .+.
T Consensus       217 ~L~  219 (224)
T cd04165         217 FLN  219 (224)
T ss_pred             HHH
Confidence            663

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=98.54  E-value=4.1e-07  Score=70.72  Aligned_cols=32  Identities=19%  Similarity=0.313  Sum_probs=24.5

Q ss_pred             CeeCCCCchhh-------hhHhhhhcCCCEEEEEEeCCC
Q psy12099          1 MFDVGGQRDER-------RKWIQCFNDVTAIIFVTACSS   32 (174)
Q Consensus         1 iwD~~Gq~~~r-------~~w~~y~~~~~~ii~v~d~s~   32 (174)
                      +||++|+.+..       ..+..++++++++++|+|.++
T Consensus        51 l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~V~D~t~   89 (233)
T cd01896          51 LLDLPGIIEGAADGKGRGRQVIAVARTADLILMVLDATK   89 (233)
T ss_pred             EEECCCcccccccchhHHHHHHHhhccCCEEEEEecCCc
Confidence            59999985432       234568999999999999953

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.53  E-value=8.5e-07  Score=78.96  Aligned_cols=64  Identities=16%  Similarity=0.158  Sum_probs=48.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|+..+...+..+++.++++|+|+|.          .+.... ....++..+..    .+.|+++++||+|+...
T Consensus        79 liDTPG~~~~~~~~~~~l~~~D~~ilVvda----------~~g~~~-~~~~~~~~~~~----~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        79 IIDTPGHVDFTVEVERSLRVLDGAVAVLDA----------VGGVQP-QSETVWRQANR----YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             EEECCCCcchhHHHHHHHHHhCEEEEEEeC----------CCCCCh-hHHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence            599999999998999999999999999999          332222 22344444322    35799999999999753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.51  E-value=3.7e-07  Score=75.38  Aligned_cols=55  Identities=20%  Similarity=0.170  Sum_probs=38.4

Q ss_pred             CchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          7 QRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         7 q~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      ++.|+.+...|+++++.+++|+|+.++.         .+      |...+.+.  ..+.|+++|+||+|+..
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~---------~s------~~~~l~~~--~~~~piilV~NK~DLl~  104 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE---------GS------LIPELKRF--VGGNPVLLVGNKIDLLP  104 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC---------CC------ccHHHHHH--hCCCCEEEEEEchhhCC
Confidence            4678888888999999999999995432         11      11222111  12579999999999964

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.48  E-value=1.8e-06  Score=62.18  Aligned_cols=106  Identities=11%  Similarity=0.109  Sum_probs=62.6

Q ss_pred             CeeCCC----------CchhhhhHhhhhcC---CCEEEEEEeCCCccccccCCCCcc-hH-HHHHHHHHHHHcCCCCCCC
Q psy12099          1 MFDVGG----------QRDERRKWIQCFND---VTAIIFVTACSSYNMVLREDPTQN-RL-RESLDLFKSIWNNRWLRTI   65 (174)
Q Consensus         1 iwD~~G----------q~~~r~~w~~y~~~---~~~ii~v~d~s~~~~~~~e~~~~~-~~-~~~~~~~~~i~~~~~~~~~   65 (174)
                      +|||+|          ++.++..+..|+..   ++++++++|.          .... .. .....|+..       .+.
T Consensus        49 ~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~----------~~~~~~~~~~~~~~l~~-------~~~  111 (170)
T cd01876          49 LVDLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDS----------RHGPTEIDLEMLDWLEE-------LGI  111 (170)
T ss_pred             EecCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEc----------CcCCCHhHHHHHHHHHH-------cCC
Confidence            589998          34566667777764   5688899988          3221 11 222333332       147


Q ss_pred             cEEEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecc
Q psy12099         66 SVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTC  145 (174)
Q Consensus        66 ~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~ts  145 (174)
                      |+++++||+|+......  . .                         ........+..           ......++.+|
T Consensus       112 ~vi~v~nK~D~~~~~~~--~-~-------------------------~~~~~~~~l~~-----------~~~~~~~~~~S  152 (170)
T cd01876         112 PFLVVLTKADKLKKSEL--A-K-------------------------ALKEIKKELKL-----------FEIDPPIILFS  152 (170)
T ss_pred             CEEEEEEchhcCChHHH--H-H-------------------------HHHHHHHHHHh-----------ccCCCceEEEe
Confidence            99999999998533211  0 0                         00111111110           01224566899


Q ss_pred             cccchhHHHHHHHHHHH
Q psy12099        146 AVDTENIRRVFNDCRDI  162 (174)
Q Consensus       146 A~d~~~i~~~f~~~~~~  162 (174)
                      |+++.++.++++.+.+.
T Consensus       153 a~~~~~~~~l~~~l~~~  169 (170)
T cd01876         153 SLKGQGIDELRALIEKW  169 (170)
T ss_pred             cCCCCCHHHHHHHHHHh
Confidence            99999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04169 RF3 RF3 subfamily

Probab=98.46  E-value=4.1e-07  Score=72.15  Aligned_cols=64  Identities=23%  Similarity=0.371  Sum_probs=47.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|+..|...+..+++.++++|+|+|.+          +.-. .....+++.. .   ..++|+++++||+|+...
T Consensus        75 liDTPG~~df~~~~~~~l~~aD~~IlVvda~----------~g~~-~~~~~i~~~~-~---~~~~P~iivvNK~D~~~a  138 (267)
T cd04169          75 LLDTPGHEDFSEDTYRTLTAVDSAVMVIDAA----------KGVE-PQTRKLFEVC-R---LRGIPIITFINKLDREGR  138 (267)
T ss_pred             EEECCCchHHHHHHHHHHHHCCEEEEEEECC----------CCcc-HHHHHHHHHH-H---hcCCCEEEEEECCccCCC
Confidence            6999999999987788899999999999994          3211 1223344332 2   236899999999998643

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.46  E-value=3.1e-06  Score=64.08  Aligned_cols=62  Identities=18%  Similarity=0.317  Sum_probs=42.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~   77 (174)
                      +.||+|+..|..-...-...++++|+|+|..          ..- .......+..+..    .+.| ++++.||+|+.
T Consensus        69 ~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~----------~g~-~~~~~~~~~~~~~----~~~~~iIvviNK~D~~  131 (195)
T cd01884          69 HVDCPGHADYIKNMITGAAQMDGAILVVSAT----------DGP-MPQTREHLLLARQ----VGVPYIVVFLNKADMV  131 (195)
T ss_pred             EEECcCHHHHHHHHHHHhhhCCEEEEEEECC----------CCC-cHHHHHHHHHHHH----cCCCcEEEEEeCCCCC
Confidence            4699999888776666778999999999993          221 1223334444332    2355 78999999986

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00503 prfC peptide chain release factor 3

Probab=98.45  E-value=1.1e-06  Score=75.86  Aligned_cols=63  Identities=17%  Similarity=0.241  Sum_probs=45.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +|||+|+..|......+++.++++|+|+|.+          +. -......+++ ++..   .++|+++++||+|+..
T Consensus        84 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~----------~g-v~~~t~~l~~-~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        84 LLDTPGHEDFSEDTYRTLTAVDNCLMVIDAA----------KG-VETRTRKLME-VTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             EEECCChhhHHHHHHHHHHhCCEEEEEEECC----------CC-CCHHHHHHHH-HHHh---cCCCEEEEEECccccC
Confidence            6999999999886667899999999999994          21 1112233443 3332   4689999999999863

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01859 MJ1464 MJ1464

Probab=98.44  E-value=5.6e-07  Score=65.34  Aligned_cols=54  Identities=17%  Similarity=0.143  Sum_probs=35.7

Q ss_pred             hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099         10 ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus        10 ~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +|.++.|..++++.+|+|+|.+          +.....+ ..+. ..+..   .+.|+++++||+|+..
T Consensus         2 ~~~~~~~i~~~aD~vl~V~D~~----------~~~~~~~-~~l~-~~~~~---~~~p~iiv~NK~Dl~~   55 (156)
T cd01859           2 WKRLVRRIIKESDVVLEVLDAR----------DPELTRS-RKLE-RYVLE---LGKKLLIVLNKADLVP   55 (156)
T ss_pred             HHHHHHHHHhhCCEEEEEeeCC----------CCcccCC-HHHH-HHHHh---CCCcEEEEEEhHHhCC
Confidence            4678899999999999999993          2211111 1111 11221   2579999999999854

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK12736 elongation factor Tu; Reviewed

Probab=98.43  E-value=3e-06  Score=70.80  Aligned_cols=63  Identities=21%  Similarity=0.299  Sum_probs=42.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~   78 (174)
                      ++||+|++.|.+....-...+|++|+|+|.          ... -.....+.+..+..    .++| ++++.||+|+..
T Consensus        79 ~iDtPGh~~f~~~~~~~~~~~d~~llVvd~----------~~g-~~~~t~~~~~~~~~----~g~~~~IvviNK~D~~~  142 (394)
T PRK12736         79 HVDCPGHADYVKNMITGAAQMDGAILVVAA----------TDG-PMPQTREHILLARQ----VGVPYLVVFLNKVDLVD  142 (394)
T ss_pred             EEECCCHHHHHHHHHHHHhhCCEEEEEEEC----------CCC-CchhHHHHHHHHHH----cCCCEEEEEEEecCCcc
Confidence            589999998876555556788999999999          321 12233344443322    2466 778999999863

>KOG1144|consensus

Probab=98.36  E-value=3.5e-06  Score=74.01  Aligned_cols=140  Identities=16%  Similarity=0.061  Sum_probs=87.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +.||.|+++|-.+....-.-|+.+|+|+|+-    --.|   +.+ .+++.   .+    ..+++||||.+||.|.+...
T Consensus       544 vIdtpghEsFtnlRsrgsslC~~aIlvvdIm----hGle---pqt-iESi~---lL----R~rktpFivALNKiDRLYgw  608 (1064)
T KOG1144|consen  544 VIDTPGHESFTNLRSRGSSLCDLAILVVDIM----HGLE---PQT-IESIN---LL----RMRKTPFIVALNKIDRLYGW  608 (1064)
T ss_pred             EecCCCchhhhhhhhccccccceEEEEeehh----ccCC---cch-hHHHH---HH----HhcCCCeEEeehhhhhhccc
Confidence            4699999999999888888999999999991    1111   111 12222   22    23689999999999987543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcC------CCCCcceeeeecccccchhHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTAS------GDGKHYCYPHFTCAVDTENIRR  154 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~------~~~~~~~~~~~tsA~d~~~i~~  154 (174)
                      -..-..++...+.....           .....|..-.+-|...|..+.-+.      -...+.+.+..|||.+|++|-.
T Consensus       609 k~~p~~~i~~~lkkQ~k-----------~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipd  677 (1064)
T KOG1144|consen  609 KSCPNAPIVEALKKQKK-----------DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPD  677 (1064)
T ss_pred             ccCCCchHHHHHHHhhH-----------HHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHH
Confidence            22113455554444432           112334444445555665552210      0233446677899999999999


Q ss_pred             HHHHHHHHHHHh
Q psy12099        155 VFNDCRDIIQRM  166 (174)
Q Consensus       155 ~f~~~~~~i~~~  166 (174)
                      ++..|...-+..
T Consensus       678 Ll~llv~ltQk~  689 (1064)
T KOG1144|consen  678 LLLLLVQLTQKT  689 (1064)
T ss_pred             HHHHHHHHHHHH
Confidence            998888765544

>PRK00098 GTPase RsgA; Reviewed

Probab=98.35  E-value=8.1e-07  Score=71.55  Aligned_cols=46  Identities=30%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099         19 NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL   77 (174)
Q Consensus        19 ~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~   77 (174)
                      .++|.+++|+|+          +++.......+.|...+..   .++|++|++||+|+.
T Consensus        79 aniD~vllV~d~----------~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~  124 (298)
T PRK00098         79 ANVDQAVLVFAA----------KEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLL  124 (298)
T ss_pred             ecCCEEEEEEEC----------CCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcC
Confidence            799999999999          5554433333333222332   468999999999995

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.34  E-value=7e-06  Score=68.58  Aligned_cols=63  Identities=17%  Similarity=0.265  Sum_probs=40.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE-EEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV-ILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i-ilv~NK~Dl~~   78 (174)
                      +|||+|++.|..-...-...++++|+|+|.          ... -.....+.+..+...    ++|. ++++||+|+..
T Consensus        79 liDtpGh~~f~~~~~~~~~~~D~~ilVvda----------~~g-~~~qt~e~l~~~~~~----gi~~iIvvvNK~Dl~~  142 (394)
T TIGR00485        79 HVDCPGHADYVKNMITGAAQMDGAILVVSA----------TDG-PMPQTREHILLARQV----GVPYIVVFLNKCDMVD  142 (394)
T ss_pred             EEECCchHHHHHHHHHHHhhCCEEEEEEEC----------CCC-CcHHHHHHHHHHHHc----CCCEEEEEEEecccCC
Confidence            699999998875444444567999999999          331 112233444443221    4564 56899999864

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.34  E-value=1.5e-06  Score=78.01  Aligned_cols=99  Identities=17%  Similarity=0.195  Sum_probs=65.0

Q ss_pred             CeeCCCCchhhh----------hHhhhh--cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEE
Q psy12099          1 MFDVGGQRDERR----------KWIQCF--NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVI   68 (174)
Q Consensus         1 iwD~~Gq~~~r~----------~w~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~ii   68 (174)
                      +|||+|+.++..          .+..|+  +.+|++|+|+|.          ++.++   .+.++.++.+    .+.|++
T Consensus        54 lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDa----------t~ler---~l~l~~ql~e----~giPvI  116 (772)
T PRK09554         54 LVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDA----------SNLER---NLYLTLQLLE----LGIPCI  116 (772)
T ss_pred             EEECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecC----------Ccchh---hHHHHHHHHH----cCCCEE
Confidence            699999987643          234454  489999999999          44433   3445555543    268999


Q ss_pred             EEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHH
Q psy12099         69 LFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAK  118 (174)
Q Consensus        69 lv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~  118 (174)
                      +++||+|+.+++-.  ...++++-...+.+..+.||.+|+|.++..+.+.
T Consensus       117 vVlNK~Dl~~~~~i--~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~  164 (772)
T PRK09554        117 VALNMLDIAEKQNI--RIDIDALSARLGCPVIPLVSTRGRGIEALKLAID  164 (772)
T ss_pred             EEEEchhhhhccCc--HHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHH
Confidence            99999998754321  2234444445566678899999998554443333

>PLN00043 elongation factor 1-alpha; Provisional

Probab=98.33  E-value=1.7e-06  Score=73.38  Aligned_cols=62  Identities=16%  Similarity=0.186  Sum_probs=44.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchH-------HHHHHHHHHHHcCCCCCCC-cEEEEEe
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRL-------RESLDLFKSIWNNRWLRTI-SVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~-------~~~~~~~~~i~~~~~~~~~-~iilv~N   72 (174)
                      +.|++||+.|.+.....++.++++|+|+|..          + ..+       ....+.+..+ ..   .++ +++++.|
T Consensus        89 liDtPGh~df~~~~~~g~~~aD~aIlVVda~----------~-G~~e~g~~~~~qT~eh~~~~-~~---~gi~~iIV~vN  153 (447)
T PLN00043         89 VIDAPGHRDFIKNMITGTSQADCAVLIIDST----------T-GGFEAGISKDGQTREHALLA-FT---LGVKQMICCCN  153 (447)
T ss_pred             EEECCCHHHHHHHHHhhhhhccEEEEEEEcc----------c-CceecccCCCchHHHHHHHH-HH---cCCCcEEEEEE
Confidence            4799999999998899999999999999993          2 111       1223333322 11   244 6888999


Q ss_pred             CCchh
Q psy12099         73 KQDLL   77 (174)
Q Consensus        73 K~Dl~   77 (174)
                      |+|+.
T Consensus       154 KmD~~  158 (447)
T PLN00043        154 KMDAT  158 (447)
T ss_pred             cccCC
Confidence            99986

>PRK12740 elongation factor G; Reviewed

Probab=98.32  E-value=3.6e-06  Score=74.71  Aligned_cols=64  Identities=14%  Similarity=0.199  Sum_probs=48.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|+..+...|..+++.+|++|+|+|.+          ..... .....+..+..    .+.|+++++||+|+...
T Consensus        64 liDtPG~~~~~~~~~~~l~~aD~vllvvd~~----------~~~~~-~~~~~~~~~~~----~~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         64 LIDTPGHVDFTGEVERALRVLDGAVVVVCAV----------GGVEP-QTETVWRQAEK----YGVPRIIFVNKMDRAGA  127 (668)
T ss_pred             EEECCCcHHHHHHHHHHHHHhCeEEEEEeCC----------CCcCH-HHHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence            5999999999899999999999999999994          33222 23344444332    36799999999998744

>KOG0462|consensus

Probab=98.28  E-value=1.9e-06  Score=73.32  Aligned_cols=106  Identities=15%  Similarity=0.202  Sum_probs=70.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +.||.|+--|+.--..-+.-|+|+|+|+|.          ..-- ....+.-|....+    .+..+|.|+||.|++.+.
T Consensus       129 LIDTPGHvDFs~EVsRslaac~G~lLvVDA----------~qGv-qAQT~anf~lAfe----~~L~iIpVlNKIDlp~ad  193 (650)
T KOG0462|consen  129 LIDTPGHVDFSGEVSRSLAACDGALLVVDA----------SQGV-QAQTVANFYLAFE----AGLAIIPVLNKIDLPSAD  193 (650)
T ss_pred             eecCCCcccccceehehhhhcCceEEEEEc----------CcCc-hHHHHHHHHHHHH----cCCeEEEeeeccCCCCCC
Confidence            469999999988778888899999999999          3332 2333333333333    367899999999999876


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      .......+   +.-|.                              .      ..   -....+|||.|.|+.+++++|.
T Consensus       194 pe~V~~q~---~~lF~------------------------------~------~~---~~~i~vSAK~G~~v~~lL~AII  231 (650)
T KOG0462|consen  194 PERVENQL---FELFD------------------------------I------PP---AEVIYVSAKTGLNVEELLEAII  231 (650)
T ss_pred             HHHHHHHH---HHHhc------------------------------C------Cc---cceEEEEeccCccHHHHHHHHH
Confidence            44111122   22221                              1      01   1344689999999999998888


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.|
T Consensus       232 ~rV  234 (650)
T KOG0462|consen  232 RRV  234 (650)
T ss_pred             hhC
Confidence            765

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.27  E-value=7.5e-06  Score=59.87  Aligned_cols=63  Identities=27%  Similarity=0.329  Sum_probs=43.1

Q ss_pred             CeeCCCC------chhhhhHhhhh--cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQ------RDERRKWIQCF--NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq------~~~r~~w~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +.|++|-      ....+.+..|.  +..|++|.|+|.          ++   ++..+.+..++...    +.|+++++|
T Consensus        51 lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa----------~~---l~r~l~l~~ql~e~----g~P~vvvlN  113 (156)
T PF02421_consen   51 LVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDA----------TN---LERNLYLTLQLLEL----GIPVVVVLN  113 (156)
T ss_dssp             EEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEG----------GG---HHHHHHHHHHHHHT----TSSEEEEEE
T ss_pred             EEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCC----------CC---HHHHHHHHHHHHHc----CCCEEEEEe
Confidence            3577773      23445666675  689999999999          44   56666666666643    589999999


Q ss_pred             CCchhhHH
Q psy12099         73 KQDLLAEK   80 (174)
Q Consensus        73 K~Dl~~~~   80 (174)
                      |+|...++
T Consensus       114 ~~D~a~~~  121 (156)
T PF02421_consen  114 KMDEAERK  121 (156)
T ss_dssp             THHHHHHT
T ss_pred             CHHHHHHc
Confidence            99987654

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=6.1e-06  Score=70.10  Aligned_cols=115  Identities=12%  Similarity=0.122  Sum_probs=73.0

Q ss_pred             eeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHH
Q psy12099          2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKV   81 (174)
Q Consensus         2 wD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~   81 (174)
                      .||+|++-|-.+...=..=+|.+|+|++.           +.--+-...+-++..    .-.++||++..||+|.++...
T Consensus        60 iDTPGHeAFt~mRaRGa~vtDIaILVVa~-----------dDGv~pQTiEAI~ha----k~a~vP~iVAiNKiDk~~~np  124 (509)
T COG0532          60 IDTPGHEAFTAMRARGASVTDIAILVVAA-----------DDGVMPQTIEAINHA----KAAGVPIVVAINKIDKPEANP  124 (509)
T ss_pred             EcCCcHHHHHHHHhcCCccccEEEEEEEc-----------cCCcchhHHHHHHHH----HHCCCCEEEEEecccCCCCCH
Confidence            69999999999988666678999999999           222223333323222    235899999999999985431


Q ss_pred             hccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHHH
Q psy12099         82 KAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRD  161 (174)
Q Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~~  161 (174)
                          ..+..-..+++-                       ...          ...+.+-+..+||+.|+|+.+++..+.-
T Consensus       125 ----~~v~~el~~~gl-----------------------~~E----------~~gg~v~~VpvSA~tg~Gi~eLL~~ill  167 (509)
T COG0532         125 ----DKVKQELQEYGL-----------------------VPE----------EWGGDVIFVPVSAKTGEGIDELLELILL  167 (509)
T ss_pred             ----HHHHHHHHHcCC-----------------------CHh----------hcCCceEEEEeeccCCCCHHHHHHHHHH
Confidence                122222222221                       001          1123466778899999999999888775


Q ss_pred             HHHHhhh
Q psy12099        162 IIQRMHL  168 (174)
Q Consensus       162 ~i~~~~~  168 (174)
                      .-....+
T Consensus       168 ~aev~el  174 (509)
T COG0532         168 LAEVLEL  174 (509)
T ss_pred             HHHHHhh
Confidence            5443333

>PRK12289 GTPase RsgA; Reviewed

Probab=98.24  E-value=3.3e-06  Score=69.52  Aligned_cols=52  Identities=17%  Similarity=0.167  Sum_probs=34.6

Q ss_pred             hHhhhhcCCCEEEEEEeCCCccccccCCCCcc-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099         13 KWIQCFNDVTAIIFVTACSSYNMVLREDPTQN-RLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus        13 ~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~-~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +....+.++|.+++|+|+          .++. .......++..+ .   ..++|++||+||+||..
T Consensus        82 L~R~~~aNvD~vLlV~d~----------~~p~~~~~~LdR~L~~a-~---~~~ip~ILVlNK~DLv~  134 (352)
T PRK12289         82 LDRPPVANADQILLVFAL----------AEPPLDPWQLSRFLVKA-E---STGLEIVLCLNKADLVS  134 (352)
T ss_pred             eechhhhcCCEEEEEEEC----------CCCCCCHHHHHHHHHHH-H---HCCCCEEEEEEchhcCC
Confidence            344568899999999999          4433 222223333333 1   24689999999999964

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.18  E-value=1.9e-05  Score=67.15  Aligned_cols=65  Identities=14%  Similarity=0.167  Sum_probs=41.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +.|++|++.|-+-...-...+|++++|+|.          ...-......+.+.. +..  ..-.+++++.||+|+..
T Consensus       121 ~IDtPGH~~fi~~m~~g~~~~D~alLVVda----------~~g~~~~qT~ehl~i-~~~--lgi~~iIVvlNKiDlv~  185 (460)
T PTZ00327        121 FVDCPGHDILMATMLNGAAVMDAALLLIAA----------NESCPQPQTSEHLAA-VEI--MKLKHIIILQNKIDLVK  185 (460)
T ss_pred             eeeCCCHHHHHHHHHHHHhhCCEEEEEEEC----------CCCccchhhHHHHHH-HHH--cCCCcEEEEEecccccC
Confidence            479999998866555556789999999999          321111122222222 221  12247899999999874

>PRK12735 elongation factor Tu; Reviewed

Probab=98.17  E-value=2.4e-05  Score=65.45  Aligned_cols=63  Identities=19%  Similarity=0.272  Sum_probs=40.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEE-EEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVI-LFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~ii-lv~NK~Dl~~   78 (174)
                      ++||+|++.|.+-...-...+|++++|+|.          .+.. .....+.+..+..    .++|.+ ++.||+|+..
T Consensus        79 ~iDtPGh~~f~~~~~~~~~~aD~~llVvda----------~~g~-~~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~  142 (396)
T PRK12735         79 HVDCPGHADYVKNMITGAAQMDGAILVVSA----------ADGP-MPQTREHILLARQ----VGVPYIVVFLNKCDMVD  142 (396)
T ss_pred             EEECCCHHHHHHHHHhhhccCCEEEEEEEC----------CCCC-chhHHHHHHHHHH----cCCCeEEEEEEecCCcc
Confidence            589999988865544556788999999999          3211 1222334433321    246754 6799999963

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.10  E-value=4.7e-06  Score=65.96  Aligned_cols=64  Identities=19%  Similarity=0.184  Sum_probs=48.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|+..+...+..+++.++++|+|+|.+          ..... .....|+.+.    ..+.|+++++||+|+...
T Consensus        68 liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~----------~g~~~-~~~~~~~~~~----~~~~p~iivvNK~D~~~~  131 (268)
T cd04170          68 LIDTPGYADFVGETRAALRAADAALVVVSAQ----------SGVEV-GTEKLWEFAD----EAGIPRIIFINKMDRERA  131 (268)
T ss_pred             EEECcCHHHHHHHHHHHHHHCCEEEEEEeCC----------CCCCH-HHHHHHHHHH----HcCCCEEEEEECCccCCC
Confidence            6999999999899999999999999999993          33222 2233344332    236799999999998754

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.06  E-value=1.4e-05  Score=67.01  Aligned_cols=64  Identities=17%  Similarity=0.160  Sum_probs=41.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      ++||+|++.|-+-...-...+|++|+|+|..          ..- .....+.+..+ ..  ....+++++.||+|+..
T Consensus        84 liDtPGh~~f~~~~~~~~~~aD~allVVda~----------~G~-~~qt~~~~~~~-~~--~~~~~iivviNK~D~~~  147 (406)
T TIGR02034        84 VADTPGHEQYTRNMATGASTADLAVLLVDAR----------KGV-LEQTRRHSYIA-SL--LGIRHVVLAVNKMDLVD  147 (406)
T ss_pred             EEeCCCHHHHHHHHHHHHhhCCEEEEEEECC----------CCC-ccccHHHHHHH-HH--cCCCcEEEEEEeccccc
Confidence            5899999998665555678999999999983          111 11111222221 11  12346899999999864

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK12739 elongation factor G; Reviewed

Probab=98.06  E-value=4e-05  Score=68.46  Aligned_cols=64  Identities=16%  Similarity=0.196  Sum_probs=47.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ++||+|+..|..-|...++.+|++|+|+|.+          ..-. ......+..+..    .+.|++++.||+|+..+
T Consensus        77 liDTPG~~~f~~e~~~al~~~D~~ilVvDa~----------~g~~-~qt~~i~~~~~~----~~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         77 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAV----------SGVE-PQSETVWRQADK----YGVPRIVFVNKMDRIGA  140 (691)
T ss_pred             EEcCCCHHHHHHHHHHHHHHhCeEEEEEeCC----------CCCC-HHHHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence            5899999999999999999999999999983          3211 222344444432    35799999999999853

>KOG1707|consensus

Probab=98.03  E-value=1.4e-05  Score=68.53  Aligned_cols=114  Identities=18%  Similarity=0.148  Sum_probs=76.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW--LRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~--~~~~~iilv~NK~Dl~~   78 (174)
                      |.|++-.+..+-.-.+=.+.|+++..|+++          ++..+++.....|--+++...  .-++||||||||+|+..
T Consensus        60 ivD~ss~~~~~~~l~~EirkA~vi~lvyav----------d~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~  129 (625)
T KOG1707|consen   60 IVDTSSDSDDRLCLRKEIRKADVICLVYAV----------DDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD  129 (625)
T ss_pred             EEecccccchhHHHHHHHhhcCEEEEEEec----------CChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc
Confidence            346654444344446678899999999999          888999998777777776644  24789999999999865


Q ss_pred             HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099         79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND  158 (174)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~  158 (174)
                      ....    .++                          .-..=|-..|.++.+          ..+|||+.-.|+.++|..
T Consensus       130 ~~~~----s~e--------------------------~~~~pim~~f~EiEt----------ciecSA~~~~n~~e~fYy  169 (625)
T KOG1707|consen  130 NENN----SDE--------------------------VNTLPIMIAFAEIET----------CIECSALTLANVSELFYY  169 (625)
T ss_pred             cccc----chh--------------------------HHHHHHHHHhHHHHH----------HHhhhhhhhhhhHhhhhh
Confidence            3211    010                          001113334444433          347899999999999988


Q ss_pred             HHHHHH
Q psy12099        159 CRDIIQ  164 (174)
Q Consensus       159 ~~~~i~  164 (174)
                      ..+.++
T Consensus       170 aqKaVi  175 (625)
T KOG1707|consen  170 AQKAVI  175 (625)
T ss_pred             hhheee
Confidence            777665

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.02  E-value=2e-05  Score=67.43  Aligned_cols=64  Identities=16%  Similarity=0.121  Sum_probs=39.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      ++||+|++.|.+-...-...+|++|+|+|..          ..- .....+.+.. +..  ....|++++.||+|+..
T Consensus       111 ~iDTPGh~~f~~~~~~~l~~aD~allVVDa~----------~G~-~~qt~~~~~l-~~~--lg~~~iIvvvNKiD~~~  174 (474)
T PRK05124        111 IADTPGHEQYTRNMATGASTCDLAILLIDAR----------KGV-LDQTRRHSFI-ATL--LGIKHLVVAVNKMDLVD  174 (474)
T ss_pred             EEECCCcHHHHHHHHHHHhhCCEEEEEEECC----------CCc-cccchHHHHH-HHH--hCCCceEEEEEeecccc
Confidence            5899999998654444468999999999983          210 0001111111 111  11247899999999863

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.02  E-value=3.1e-05  Score=60.44  Aligned_cols=131  Identities=15%  Similarity=0.094  Sum_probs=64.4

Q ss_pred             CeeCCCCchhhhhHhhhh--------cCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEE
Q psy12099          1 MFDVGGQRDERRKWIQCF--------NDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFL   71 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~--------~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~   71 (174)
                      |+||+||-++-..|..--        ...-++++++|.+-.       ++...+-.+ +.-+..+++    -+.|.+.++
T Consensus        95 l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~-------~~~~~f~s~~L~s~s~~~~----~~lP~vnvl  163 (238)
T PF03029_consen   95 LFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFC-------SDPSKFVSSLLLSLSIMLR----LELPHVNVL  163 (238)
T ss_dssp             EEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG--------SSHHHHHHHHHHHHHHHHH----HTSEEEEEE
T ss_pred             EEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccc-------cChhhHHHHHHHHHHHHhh----CCCCEEEee
Confidence            589999988877776554        567789999998422       233333332 222333333    268999999


Q ss_pred             eCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHH-HHHHHHHhhhcCCCCCcce-eeeecccccc
Q psy12099         72 NKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF-IRDEFLRISTASGDGKHYC-YPHFTCAVDT  149 (174)
Q Consensus        72 NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~-i~~~f~~~~~~~~~~~~~~-~~~~tsA~d~  149 (174)
                      ||+|+..+..+    ..-+|+.+..                ........ .......+... ......+ .+...|++++
T Consensus       164 sK~Dl~~~~~~----~~l~~~~d~~----------------~l~~~~~~~~~~l~~~i~~~-l~~~~~~~~f~pls~~~~  222 (238)
T PF03029_consen  164 SKIDLLSKYLE----FILEWFEDPD----------------SLEDLLESDYKKLNEEIAEL-LDDFGLVIRFIPLSSKDG  222 (238)
T ss_dssp             --GGGS-HHHH----HHHHHHHSHH----------------HHHHHHHT-HHHHHHHHHHH-CCCCSSS---EE-BTTTT
T ss_pred             eccCcccchhH----HHHHHhcChH----------------HHHHHHHHHHHHHHHHHHHH-HhhcCCCceEEEEECCCh
Confidence            99999875422    2223333332                12221110 01111111111 1122223 6788999999


Q ss_pred             hhHHHHHHHHHHHH
Q psy12099        150 ENIRRVFNDCRDII  163 (174)
Q Consensus       150 ~~i~~~f~~~~~~i  163 (174)
                      +++.+++..+.+.+
T Consensus       223 ~~~~~L~~~id~a~  236 (238)
T PF03029_consen  223 EGMEELLAAIDKAN  236 (238)
T ss_dssp             TTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999998887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.02  E-value=1.9e-05  Score=64.91  Aligned_cols=45  Identities=24%  Similarity=0.287  Sum_probs=33.3

Q ss_pred             CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099         20 DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus        20 ~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      |+|.+++|+++          .+..++.....|+..+ .   ..++|++||+||+||..
T Consensus       120 NvD~vlIV~s~----------~p~~s~~~Ldr~L~~a-~---~~~i~~VIVlNK~DL~~  164 (347)
T PRK12288        120 NIDQIVIVSAV----------LPELSLNIIDRYLVAC-E---TLGIEPLIVLNKIDLLD  164 (347)
T ss_pred             EccEEEEEEeC----------CCCCCHHHHHHHHHHH-H---hcCCCEEEEEECccCCC
Confidence            48999999998          6666666665655433 2   24689999999999964

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.00  E-value=2.4e-05  Score=62.75  Aligned_cols=49  Identities=18%  Similarity=0.180  Sum_probs=35.6

Q ss_pred             hhcCCCEEEEEEeCCCccccccCCCCcc-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099         17 CFNDVTAIIFVTACSSYNMVLREDPTQN-RLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus        17 y~~~~~~ii~v~d~s~~~~~~~e~~~~~-~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ...++|.+++|+|+          .++. ++.....|+..+..    .++|++||+||+||..+
T Consensus        75 i~anvD~vllV~d~----------~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~  124 (287)
T cd01854          75 IAANVDQLVIVVSL----------NEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDD  124 (287)
T ss_pred             EEEeCCEEEEEEEc----------CCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCCh
Confidence            36799999999999          5555 55555555554432    36899999999999643

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=97.98  E-value=9.1e-05  Score=55.96  Aligned_cols=60  Identities=13%  Similarity=0.098  Sum_probs=35.8

Q ss_pred             CeeCCCCchhhhhHhhh-----hcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCC
Q psy12099          1 MFDVGGQRDERRKWIQC-----FNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQ   74 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y-----~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~   74 (174)
                      +|||+|.......-..|     +.+++.+|++.+-           .   +.+.. .+++. +...   +.|+++|+||+
T Consensus        56 l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~-----------~---~~~~d~~~~~~-l~~~---~~~~ilV~nK~  117 (197)
T cd04104          56 LWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST-----------R---FSSNDVKLAKA-IQCM---GKKFYFVRTKV  117 (197)
T ss_pred             EEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC-----------C---CCHHHHHHHHH-HHHh---CCCEEEEEecc
Confidence            69999985432222223     6788888887433           2   22222 33333 3321   57999999999


Q ss_pred             chhh
Q psy12099         75 DLLA   78 (174)
Q Consensus        75 Dl~~   78 (174)
                      |+..
T Consensus       118 D~~~  121 (197)
T cd04104         118 DRDL  121 (197)
T ss_pred             cchh
Confidence            9853

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>CHL00071 tufA elongation factor Tu

Probab=97.97  E-value=0.00012  Score=61.58  Aligned_cols=63  Identities=17%  Similarity=0.278  Sum_probs=43.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~   78 (174)
                      +.||+|++.|-+-...-...+|++++|+|.          ... -.....+.+..+..    .+.| ++++.||+|+..
T Consensus        79 ~iDtPGh~~~~~~~~~~~~~~D~~ilVvda----------~~g-~~~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~  142 (409)
T CHL00071         79 HVDCPGHADYVKNMITGAAQMDGAILVVSA----------ADG-PMPQTKEHILLAKQ----VGVPNIVVFLNKEDQVD  142 (409)
T ss_pred             EEECCChHHHHHHHHHHHHhCCEEEEEEEC----------CCC-CcHHHHHHHHHHHH----cCCCEEEEEEEccCCCC
Confidence            369999988866666667899999999999          321 12334444444322    2467 778999999874

>PLN03126 Elongation factor Tu; Provisional

Probab=97.96  E-value=5.8e-05  Score=64.58  Aligned_cols=63  Identities=19%  Similarity=0.263  Sum_probs=44.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~   78 (174)
                      ++|++|++.|-+-...-...+|++|+|+|.          .+. -.....+++..+..    .++| ++++.||+|+..
T Consensus       148 liDtPGh~~f~~~~~~g~~~aD~ailVVda----------~~G-~~~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~  211 (478)
T PLN03126        148 HVDCPGHADYVKNMITGAAQMDGAILVVSG----------ADG-PMPQTKEHILLAKQ----VGVPNMVVFLNKQDQVD  211 (478)
T ss_pred             EEECCCHHHHHHHHHHHHhhCCEEEEEEEC----------CCC-CcHHHHHHHHHHHH----cCCCeEEEEEecccccC
Confidence            589999999876655566789999999998          322 22334455544332    2466 788999999864

>KOG1489|consensus

Probab=97.96  E-value=2.5e-05  Score=62.72  Aligned_cols=88  Identities=17%  Similarity=0.261  Sum_probs=59.0

Q ss_pred             hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHH-cCCCCCCCcEEEEEeCCchhhHHHhccccchhhhhhc
Q psy12099         16 QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIW-NNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQE   94 (174)
Q Consensus        16 ~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~-~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~   94 (174)
                      .+.+.++..+||+|+|.+..       .+-++....++.++- -+..+.+.|.+||+||+|+++..    ..-+++.++.
T Consensus       270 rHiER~~~l~fVvD~s~~~~-------~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae----~~~l~~L~~~  338 (366)
T KOG1489|consen  270 RHIERCKGLLFVVDLSGKQL-------RNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE----KNLLSSLAKR  338 (366)
T ss_pred             HHHHhhceEEEEEECCCccc-------CCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH----HHHHHHHHHH
Confidence            34568999999999965422       255555555554442 22346778999999999997543    2235666666


Q ss_pred             cCCC-CCCCCCCCCCCCChHH
Q psy12099         95 FTRY-QTPLDATPDPGEDPIV  114 (174)
Q Consensus        95 ~~~~-~~~~~a~~~~g~~~~~  114 (174)
                      -..+ ..|.||++|+|..+..
T Consensus       339 lq~~~V~pvsA~~~egl~~ll  359 (366)
T KOG1489|consen  339 LQNPHVVPVSAKSGEGLEELL  359 (366)
T ss_pred             cCCCcEEEeeeccccchHHHH
Confidence            6554 7899999998864443

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.88  E-value=1.7e-05  Score=70.14  Aligned_cols=98  Identities=15%  Similarity=0.116  Sum_probs=58.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh--
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA--   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~--   78 (174)
                      ++||+|++.|......-...+|++|+|+|..          ... .....+.+..+ ..  ....+++|+.||+|+.+  
T Consensus       108 liDtPG~~~f~~~~~~~~~~aD~~llVvda~----------~g~-~~~t~e~~~~~-~~--~~~~~iivvvNK~D~~~~~  173 (632)
T PRK05506        108 VADTPGHEQYTRNMVTGASTADLAIILVDAR----------KGV-LTQTRRHSFIA-SL--LGIRHVVLAVNKMDLVDYD  173 (632)
T ss_pred             EEECCChHHHHHHHHHHHHhCCEEEEEEECC----------CCc-cccCHHHHHHH-HH--hCCCeEEEEEEecccccch
Confidence            5899999988665555578999999999983          211 11111222211 11  12357899999999963  


Q ss_pred             -HHHhccccchhhhhhccCC---CCCCCCCCCCCCCCh
Q psy12099         79 -EKVKAGKSRLEDYFQEFTR---YQTPLDATPDPGEDP  112 (174)
Q Consensus        79 -~~~~~~~~~l~~~~~~~~~---~~~~~~a~~~~g~~~  112 (174)
                       +.+......+.+++..++.   +..|.||++|.|..+
T Consensus       174 ~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        174 QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence             1111001233333333332   367899999999763

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=97.88  E-value=0.00013  Score=61.99  Aligned_cols=63  Identities=19%  Similarity=0.258  Sum_probs=42.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcc---hH---HHHHHHHHHHHcCCCCCCC-cEEEEEeC
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQN---RL---RESLDLFKSIWNNRWLRTI-SVILFLNK   73 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~---~~---~~~~~~~~~i~~~~~~~~~-~iilv~NK   73 (174)
                      +.||+|++.|-.-...-...+|++|+|+|.+          ...   .+   ....+.+..+. .   .++ +++++.||
T Consensus        89 lIDtPGh~~f~~~~~~g~~~aD~ailVVda~----------~G~~e~~~~~~~qT~eh~~~~~-~---~gi~~iiv~vNK  154 (446)
T PTZ00141         89 IIDAPGHRDFIKNMITGTSQADVAILVVAST----------AGEFEAGISKDGQTREHALLAF-T---LGVKQMIVCINK  154 (446)
T ss_pred             EEECCChHHHHHHHHHhhhhcCEEEEEEEcC----------CCceecccCCCccHHHHHHHHH-H---cCCCeEEEEEEc
Confidence            5799999999887777788999999999993          210   00   12233333321 1   244 47899999


Q ss_pred             Cchh
Q psy12099         74 QDLL   77 (174)
Q Consensus        74 ~Dl~   77 (174)
                      +|..
T Consensus       155 mD~~  158 (446)
T PTZ00141        155 MDDK  158 (446)
T ss_pred             cccc
Confidence            9953

>KOG1532|consensus

Probab=97.87  E-value=8.7e-05  Score=58.76  Aligned_cols=135  Identities=14%  Similarity=0.227  Sum_probs=73.8

Q ss_pred             CeeCCCC-chhh-----hhHhhhh--cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQ-RDER-----RKWIQCF--NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq-~~~r-----~~w~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      |.||.|| |.|-     ++...-+  ....+++||+|...       .+++..|-...-+--+++..   .+.|+++++|
T Consensus       120 liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~r-------s~~p~tFMSNMlYAcSilyk---tklp~ivvfN  189 (366)
T KOG1532|consen  120 LIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPR-------STSPTTFMSNMLYACSILYK---TKLPFIVVFN  189 (366)
T ss_pred             EEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCc-------CCCchhHHHHHHHHHHHHHh---ccCCeEEEEe
Confidence            4688998 3332     1111111  24578889999832       13455555444444444432   4689999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCC--CCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccch
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATP--DPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTE  150 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~--~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~  150 (174)
                      |+|+......      .+|..+|...   ..|..  +.+=..+.....+.....|.          +.+...-+||.+|.
T Consensus       190 K~Dv~d~~fa------~eWm~DfE~F---qeAl~~~~~~y~s~l~~SmSL~leeFY----------~~lrtv~VSs~tG~  250 (366)
T KOG1532|consen  190 KTDVSDSEFA------LEWMTDFEAF---QEALNEAESSYMSNLTRSMSLMLEEFY----------RSLRTVGVSSVTGE  250 (366)
T ss_pred             cccccccHHH------HHHHHHHHHH---HHHHHhhccchhHHhhhhHHHHHHHHH----------hhCceEEEecccCC
Confidence            9999765432      3555555410   00000  00001122222333333332          23455678999999


Q ss_pred             hHHHHHHHHHHHHH
Q psy12099        151 NIRRVFNDCRDIIQ  164 (174)
Q Consensus       151 ~i~~~f~~~~~~i~  164 (174)
                      +..+.|.+|...+-
T Consensus       251 G~ddf~~av~~~vd  264 (366)
T KOG1532|consen  251 GFDDFFTAVDESVD  264 (366)
T ss_pred             cHHHHHHHHHHHHH
Confidence            99999999887654

>cd01858 NGP_1 NGP-1

Probab=97.87  E-value=5.7e-05  Score=54.90  Aligned_cols=49  Identities=16%  Similarity=0.158  Sum_probs=30.1

Q ss_pred             hhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099         17 CFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus        17 y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      -++++|.+++|+|.+          ++..- .. ..+...+.. ...+.|+++++||+|+..
T Consensus         5 ~l~~aD~il~VvD~~----------~p~~~-~~-~~i~~~l~~-~~~~~p~ilVlNKiDl~~   53 (157)
T cd01858           5 VIDSSDVVIQVLDAR----------DPMGT-RC-KHVEEYLKK-EKPHKHLIFVLNKCDLVP   53 (157)
T ss_pred             hhhhCCEEEEEEECC----------CCccc-cC-HHHHHHHHh-ccCCCCEEEEEEchhcCC
Confidence            357999999999993          32110 01 122222222 123579999999999964

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.85  E-value=6.3e-05  Score=45.44  Aligned_cols=45  Identities=36%  Similarity=0.425  Sum_probs=30.4

Q ss_pred             CCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCc
Q psy12099         21 VTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQD   75 (174)
Q Consensus        21 ~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~D   75 (174)
                      .++|+|++|.|+.+        --++++-..+++++...  +.+.|+++|.||+|
T Consensus        14 ~~~ilfi~D~Se~C--------Gysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQC--------GYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TT--------SS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCC--------CCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence            57899999997543        33677778888888643  67999999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PRK09866 hypothetical protein; Provisional

Probab=97.82  E-value=0.00027  Score=62.08  Aligned_cols=112  Identities=9%  Similarity=0.061  Sum_probs=63.0

Q ss_pred             CeeCCCCchh-----hhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCc
Q psy12099          1 MFDVGGQRDE-----RRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQD   75 (174)
Q Consensus         1 iwD~~Gq~~~-----r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~D   75 (174)
                      +.||+|-..-     ...-...+.++|.|+||+|.          +..-+..+ ....+. ++. ..++.|++++.||+|
T Consensus       234 FVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDa----------t~~~s~~D-eeIlk~-Lkk-~~K~~PVILVVNKID  300 (741)
T PRK09866        234 LLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDY----------TQLKSISD-EEVREA-ILA-VGQSVPLYVLVNKFD  300 (741)
T ss_pred             EEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeC----------CCCCChhH-HHHHHH-HHh-cCCCCCEEEEEEccc
Confidence            3599998541     22344578899999999998          43222222 122232 222 122369999999999


Q ss_pred             hhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHH
Q psy12099         76 LLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRV  155 (174)
Q Consensus        76 l~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~  155 (174)
                      +.++.-                              ...+....++...+...      ....-.++.+||+.|.|++.+
T Consensus       301 l~dree------------------------------ddkE~Lle~V~~~L~q~------~i~f~eIfPVSAlkG~nid~L  344 (741)
T PRK09866        301 QQDRNS------------------------------DDADQVRALISGTLMKG------CITPQQIFPVSSMWGYLANRA  344 (741)
T ss_pred             CCCccc------------------------------chHHHHHHHHHHHHHhc------CCCCceEEEEeCCCCCCHHHH
Confidence            853210                              01222333333222110      011234667899999998888


Q ss_pred             HHHHHH
Q psy12099        156 FNDCRD  161 (174)
Q Consensus       156 f~~~~~  161 (174)
                      .+.|..
T Consensus       345 LdeI~~  350 (741)
T PRK09866        345 RHELAN  350 (741)
T ss_pred             HHHHHh
Confidence            887765

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.81  E-value=2.9e-05  Score=55.56  Aligned_cols=74  Identities=19%  Similarity=0.211  Sum_probs=45.0

Q ss_pred             hhcCCCEEEEEEeCCCccccccCCCCcchHH--HHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhccccchhhhhhc
Q psy12099         17 CFNDVTAIIFVTACSSYNMVLREDPTQNRLR--ESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQE   94 (174)
Q Consensus        17 y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~--~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~   94 (174)
                      ..+++|.+++|+|.          .++.+..  ....++..    . ..+.|+++++||+|+..+...   ....+++..
T Consensus         8 ~i~~aD~vl~ViD~----------~~p~~~~~~~l~~~l~~----~-~~~k~~iivlNK~DL~~~~~~---~~~~~~~~~   69 (141)
T cd01857           8 VVERSDIVVQIVDA----------RNPLLFRPPDLERYVKE----V-DPRKKNILLLNKADLLTEEQR---KAWAEYFKK   69 (141)
T ss_pred             HHhhCCEEEEEEEc----------cCCcccCCHHHHHHHHh----c-cCCCcEEEEEechhcCCHHHH---HHHHHHHHh
Confidence            46789999999999          3332211  22222222    1 146899999999999643321   233445544


Q ss_pred             cCCCCCCCCCCCCC
Q psy12099         95 FTRYQTPLDATPDP  108 (174)
Q Consensus        95 ~~~~~~~~~a~~~~  108 (174)
                      .+....+.||.+|.
T Consensus        70 ~~~~ii~iSa~~~~   83 (141)
T cd01857          70 EGIVVVFFSALKEN   83 (141)
T ss_pred             cCCeEEEEEecCCC
Confidence            44456677888775

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG1160 Predicted GTPases [General function prediction only]

Probab=97.80  E-value=0.00021  Score=59.92  Aligned_cols=110  Identities=15%  Similarity=0.262  Sum_probs=63.8

Q ss_pred             CeeCCCCchhhhhHh-----------hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099          1 MFDVGGQRDERRKWI-----------QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL   69 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~-----------~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil   69 (174)
                      +.||||-++-.+...           .-.+.++.|++|.|.          +..-+ +.-+.....+.+    ...+++|
T Consensus       230 liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa----------~~~~~-~qD~~ia~~i~~----~g~~~vI  294 (444)
T COG1160         230 LIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDA----------TEGIS-EQDLRIAGLIEE----AGRGIVI  294 (444)
T ss_pred             EEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEEC----------CCCch-HHHHHHHHHHHH----cCCCeEE
Confidence            468999876544332           223478999999999          33322 222233333332    3679999


Q ss_pred             EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099         70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT  149 (174)
Q Consensus        70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~  149 (174)
                      +.||.|+.++.-.    .                          .++...-+..+|.-+.        ...++++||+.+
T Consensus       295 vvNKWDl~~~~~~----~--------------------------~~~~k~~i~~~l~~l~--------~a~i~~iSA~~~  336 (444)
T COG1160         295 VVNKWDLVEEDEA----T--------------------------MEEFKKKLRRKLPFLD--------FAPIVFISALTG  336 (444)
T ss_pred             EEEccccCCchhh----H--------------------------HHHHHHHHHHHhcccc--------CCeEEEEEecCC
Confidence            9999998764110    0                          1111122222222211        235677888888


Q ss_pred             hhHHHHHHHHHHHH
Q psy12099        150 ENIRRVFNDCRDII  163 (174)
Q Consensus       150 ~~i~~~f~~~~~~i  163 (174)
                      .++..+|+.+.+..
T Consensus       337 ~~i~~l~~~i~~~~  350 (444)
T COG1160         337 QGLDKLFEAIKEIY  350 (444)
T ss_pred             CChHHHHHHHHHHH
Confidence            88888888877654

>cd01899 Ygr210 Ygr210 subfamily

Probab=97.80  E-value=0.00031  Score=57.18  Aligned_cols=32  Identities=25%  Similarity=0.349  Sum_probs=26.1

Q ss_pred             CeeCCCC----chhhhhHhh---hhcCCCEEEEEEeCCC
Q psy12099          1 MFDVGGQ----RDERRKWIQ---CFNDVTAIIFVTACSS   32 (174)
Q Consensus         1 iwD~~Gq----~~~r~~w~~---y~~~~~~ii~v~d~s~   32 (174)
                      +|||+|+    ++++.+-..   ++++|+++|+|+|+++
T Consensus        73 l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          73 LIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             EEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence            6999998    666665444   4899999999999975

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=97.76  E-value=3.7e-05  Score=68.91  Aligned_cols=64  Identities=19%  Similarity=0.310  Sum_probs=46.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|+..|.......++.+|++|+|+|..          +.- .......+....+    .+.|+++++||+|....
T Consensus        90 liDTPG~~~f~~~~~~al~~aD~~llVvda~----------~g~-~~~t~~~~~~~~~----~~~p~ivviNKiD~~~~  153 (720)
T TIGR00490        90 LIDTPGHVDFGGDVTRAMRAVDGAIVVVCAV----------EGV-MPQTETVLRQALK----ENVKPVLFINKVDRLIN  153 (720)
T ss_pred             EEeCCCccccHHHHHHHHHhcCEEEEEEecC----------CCC-CccHHHHHHHHHH----cCCCEEEEEEChhcccc
Confidence            5999999999888888999999999999983          211 1122233443322    25688899999998743

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK00049 elongation factor Tu; Reviewed

Probab=97.74  E-value=0.00039  Score=58.22  Aligned_cols=63  Identities=19%  Similarity=0.272  Sum_probs=41.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEE-EEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVI-LFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~ii-lv~NK~Dl~~   78 (174)
                      +.||+|++.|..-...-...+|++++|+|.          ... -.....+.+..+..    .+.|++ ++.||+|+..
T Consensus        79 ~iDtPG~~~f~~~~~~~~~~aD~~llVVDa----------~~g-~~~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~  142 (396)
T PRK00049         79 HVDCPGHADYVKNMITGAAQMDGAILVVSA----------ADG-PMPQTREHILLARQ----VGVPYIVVFLNKCDMVD  142 (396)
T ss_pred             EEECCCHHHHHHHHHhhhccCCEEEEEEEC----------CCC-CchHHHHHHHHHHH----cCCCEEEEEEeecCCcc
Confidence            369999988765555556899999999998          322 11233344444332    246865 5899999863

>PRK00007 elongation factor G; Reviewed

Probab=97.74  E-value=0.00028  Score=63.09  Aligned_cols=64  Identities=16%  Similarity=0.137  Sum_probs=44.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +.||+|+..|-.-...-.+.++++|+|+|..          ..- .......+..+...    +.|++++.||+|+..+
T Consensus        79 liDTPG~~~f~~ev~~al~~~D~~vlVvda~----------~g~-~~qt~~~~~~~~~~----~~p~iv~vNK~D~~~~  142 (693)
T PRK00007         79 IIDTPGHVDFTIEVERSLRVLDGAVAVFDAV----------GGV-EPQSETVWRQADKY----KVPRIAFVNKMDRTGA  142 (693)
T ss_pred             EEeCCCcHHHHHHHHHHHHHcCEEEEEEECC----------CCc-chhhHHHHHHHHHc----CCCEEEEEECCCCCCC
Confidence            4699999877665556678999999999983          221 12334445554432    5788999999999754

>COG1159 Era GTPase [General function prediction only]

Probab=97.67  E-value=0.00024  Score=56.67  Aligned_cols=100  Identities=20%  Similarity=0.264  Sum_probs=56.2

Q ss_pred             eeCCCCchhhhhH--------hhhhcCCCEEEEEEeCCCccccccCCCC-cchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          2 FDVGGQRDERRKW--------IQCFNDVTAIIFVTACSSYNMVLREDPT-QNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         2 wD~~Gq~~~r~~w--------~~y~~~~~~ii~v~d~s~~~~~~~e~~~-~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      .||.|=.+-+..-        ..-+.++|.++||+|.          +. ....+  ...++. ++.   .+.|++++.|
T Consensus        59 vDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~----------~~~~~~~d--~~il~~-lk~---~~~pvil~iN  122 (298)
T COG1159          59 VDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDA----------DEGWGPGD--EFILEQ-LKK---TKTPVILVVN  122 (298)
T ss_pred             EeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEec----------cccCCccH--HHHHHH-Hhh---cCCCeEEEEE
Confidence            5888864333222        2345699999999999          33 22211  122222 222   4689999999


Q ss_pred             CCchhhHHHhccccchhhhhh---ccCCCCCCCCCCCCCCCChHHHHHHHH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQ---EFTRYQTPLDATPDPGEDPIVIRAKYF  120 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~---~~~~~~~~~~a~~~~g~~~~~~~a~~~  120 (174)
                      |.|....+..  -.++..+..   +|. ...|.||++|.|.+...+....+
T Consensus       123 KID~~~~~~~--l~~~~~~~~~~~~f~-~ivpiSA~~g~n~~~L~~~i~~~  170 (298)
T COG1159         123 KIDKVKPKTV--LLKLIAFLKKLLPFK-EIVPISALKGDNVDTLLEIIKEY  170 (298)
T ss_pred             ccccCCcHHH--HHHHHHHHHhhCCcc-eEEEeeccccCCHHHHHHHHHHh
Confidence            9998765431  112222222   122 45778888887765444444433

>PLN03127 Elongation factor Tu; Provisional

Probab=97.63  E-value=0.00096  Score=56.77  Aligned_cols=63  Identities=19%  Similarity=0.302  Sum_probs=40.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~   78 (174)
                      +.||+|++.|-.....-...+|++++|+|.          .+.. .....+.+..+..    .++| ++++.||+|+..
T Consensus       128 ~iDtPGh~~f~~~~~~g~~~aD~allVVda----------~~g~-~~qt~e~l~~~~~----~gip~iIvviNKiDlv~  191 (447)
T PLN03127        128 HVDCPGHADYVKNMITGAAQMDGGILVVSA----------PDGP-MPQTKEHILLARQ----VGVPSLVVFLNKVDVVD  191 (447)
T ss_pred             EEECCCccchHHHHHHHHhhCCEEEEEEEC----------CCCC-chhHHHHHHHHHH----cCCCeEEEEEEeeccCC
Confidence            469999988755444444679999999998          3221 1223333443322    2467 578899999864

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=97.62  E-value=0.00011  Score=62.00  Aligned_cols=66  Identities=18%  Similarity=0.276  Sum_probs=45.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +.||.|+--|.---..-+..|-|+|+|+|.          +.--.-+...+.+..+ .+    +..|+-|+||.||+.+.
T Consensus        80 lIDTPGHVDFsYEVSRSLAACEGalLvVDA----------sQGveAQTlAN~YlAl-e~----~LeIiPViNKIDLP~Ad  144 (603)
T COG0481          80 LIDTPGHVDFSYEVSRSLAACEGALLVVDA----------SQGVEAQTLANVYLAL-EN----NLEIIPVLNKIDLPAAD  144 (603)
T ss_pred             EcCCCCccceEEEehhhHhhCCCcEEEEEC----------ccchHHHHHHHHHHHH-Hc----CcEEEEeeecccCCCCC
Confidence            369999977765555566789999999999          4443333333444443 22    56788889999998765


Q ss_pred             H
Q psy12099         81 V   81 (174)
Q Consensus        81 ~   81 (174)
                      .
T Consensus       145 p  145 (603)
T COG0481         145 P  145 (603)
T ss_pred             H
Confidence            3

>PRK13796 GTPase YqeH; Provisional

Probab=97.55  E-value=0.00048  Score=57.09  Aligned_cols=22  Identities=9%  Similarity=0.067  Sum_probs=16.2

Q ss_pred             eeeecccccchhHHHHHHHHHH
Q psy12099        140 YPHFTCAVDTENIRRVFNDCRD  161 (174)
Q Consensus       140 ~~~~tsA~d~~~i~~~f~~~~~  161 (174)
                      .++.+||+++.|++++++.+.+
T Consensus       135 ~v~~vSAk~g~gI~eL~~~I~~  156 (365)
T PRK13796        135 DVVLISAQKGHGIDELLEAIEK  156 (365)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3567788888888888777754

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=97.52  E-value=0.00029  Score=57.30  Aligned_cols=100  Identities=14%  Similarity=0.146  Sum_probs=63.8

Q ss_pred             hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHc-CCCCCCCcEEEEEeCCchhhHHHhccccchhhhhhc
Q psy12099         16 QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWN-NRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQE   94 (174)
Q Consensus        16 ~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~-~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~   94 (174)
                      .+.+.+..+++|+|++..+.       .+-.++...+..++-. ++.+.+.|.+|++||+|+......  ...+.+.+..
T Consensus       233 rHIERt~vL~hviD~s~~~~-------~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~--~~~~~~~l~~  303 (369)
T COG0536         233 RHIERTRVLLHVIDLSPIDG-------RDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEE--LEELKKALAE  303 (369)
T ss_pred             HHHHhhheeEEEEecCcccC-------CCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHH--HHHHHHHHHH
Confidence            34567899999999964421       2234444444444432 245778899999999995433222  2344455554


Q ss_pred             c-CCCCCC-CCCCCCCCCChHHHHHHHHHHHH
Q psy12099         95 F-TRYQTP-LDATPDPGEDPIVIRAKYFIRDE  124 (174)
Q Consensus        95 ~-~~~~~~-~~a~~~~g~~~~~~~a~~~i~~~  124 (174)
                      . .+.... .||.+++|.++......+++...
T Consensus       304 ~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         304 ALGWEVFYLISALTREGLDELLRALAELLEET  335 (369)
T ss_pred             hcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence            3 332222 89999999998888888877654

>COG1160 Predicted GTPases [General function prediction only]

Probab=97.50  E-value=0.0003  Score=59.03  Aligned_cols=100  Identities=19%  Similarity=0.264  Sum_probs=66.3

Q ss_pred             CeeCCCCchh---------hhhHhhhhcCCCEEEEEEeCCCccccccCCCC-cchHHHHHHHHHHHHcCCCCCCCcEEEE
Q psy12099          1 MFDVGGQRDE---------RRKWIQCFNDVTAIIFVTACSSYNMVLREDPT-QNRLRESLDLFKSIWNNRWLRTISVILF   70 (174)
Q Consensus         1 iwD~~Gq~~~---------r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~-~~~~~~~~~~~~~i~~~~~~~~~~iilv   70 (174)
                      +.||||-+..         +.....-+..||++|||+|.          .. ....+   +.+-+++..   .+.|++|+
T Consensus        55 lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~----------~~Git~~D---~~ia~~Lr~---~~kpviLv  118 (444)
T COG1160          55 LIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDG----------REGITPAD---EEIAKILRR---SKKPVILV  118 (444)
T ss_pred             EEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeC----------CCCCCHHH---HHHHHHHHh---cCCCEEEE
Confidence            4688887632         23344556799999999999          22 22222   222333331   36899999


Q ss_pred             EeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHH
Q psy12099         71 LNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFI  121 (174)
Q Consensus        71 ~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i  121 (174)
                      .||+|-...     .....++..-.-+.+.+.||.-|.|..+..++..+.+
T Consensus       119 vNK~D~~~~-----e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l  164 (444)
T COG1160         119 VNKIDNLKA-----EELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELL  164 (444)
T ss_pred             EEcccCchh-----hhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence            999998743     2344455555556788999999999888877776664

>COG2262 HflX GTPases [General function prediction only]

Probab=97.50  E-value=0.00052  Score=56.97  Aligned_cols=49  Identities=24%  Similarity=0.396  Sum_probs=36.8

Q ss_pred             CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099         20 DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus        20 ~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      .+|.++.|+|.          +++ ...+-.+....++..-...++|+++++||.|+...
T Consensus       271 ~aDlllhVVDa----------Sdp-~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~  319 (411)
T COG2262         271 EADLLLHVVDA----------SDP-EILEKLEAVEDVLAEIGADEIPIILVLNKIDLLED  319 (411)
T ss_pred             cCCEEEEEeec----------CCh-hHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCc
Confidence            78999999999          566 34444455566666655667999999999997654

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.47  E-value=0.00064  Score=49.25  Aligned_cols=42  Identities=24%  Similarity=0.243  Sum_probs=26.1

Q ss_pred             CEEEEEEeCCCccccccCCCCcchHHHHHHHHH-HHHcCCCCCCCcEEEEEeCCchhh
Q psy12099         22 TAIIFVTACSSYNMVLREDPTQNRLRESLDLFK-SIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus        22 ~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~-~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      |.+|+|+|.          .++.....  .++. ..+.   ..+.|+++++||+|+..
T Consensus         1 Dvvl~VvD~----------~~p~~~~~--~~i~~~~~~---~~~~p~IiVlNK~Dl~~   43 (155)
T cd01849           1 DVILEVLDA----------RDPLGTRS--PDIERVLIK---EKGKKLILVLNKADLVP   43 (155)
T ss_pred             CEEEEEEec----------cCCccccC--HHHHHHHHh---cCCCCEEEEEechhcCC
Confidence            578999999          33332221  1222 2222   23689999999999954

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG3886|consensus

Probab=97.45  E-value=0.00019  Score=55.46  Aligned_cols=66  Identities=21%  Similarity=0.441  Sum_probs=46.0

Q ss_pred             CeeCCCCchhh-----hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHH----HHHcCCCCCCCcEEEEE
Q psy12099          1 MFDVGGQRDER-----RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFK----SIWNNRWLRTISVILFL   71 (174)
Q Consensus         1 iwD~~Gq~~~r-----~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~----~i~~~~~~~~~~iilv~   71 (174)
                      +||.|||+.+-     ..-.+-|+++.++|+|||+          + .+.++.-...++    .++++  .+...+..+.
T Consensus        57 lwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDv----------e-s~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~  123 (295)
T KOG3886|consen   57 LWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDV----------E-SREMEKDFHYYQKCLEALLQN--SPEAKIFCLL  123 (295)
T ss_pred             hhccCCcHHHHHHHHhhcchhhheeheeeeeeeec----------c-chhhhhhHHHHHHHHHHHHhc--CCcceEEEEE
Confidence            59999998553     3456788999999999999          2 333333334443    34444  3466788899


Q ss_pred             eCCchhhH
Q psy12099         72 NKQDLLAE   79 (174)
Q Consensus        72 NK~Dl~~~   79 (174)
                      .|+|+..+
T Consensus       124 hKmDLv~~  131 (295)
T KOG3886|consen  124 HKMDLVQE  131 (295)
T ss_pred             eechhccc
Confidence            99999743

>KOG1145|consensus

Probab=97.42  E-value=0.00069  Score=58.25  Aligned_cols=66  Identities=14%  Similarity=0.184  Sum_probs=45.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +.||.|+.-|..+...=-..+|.+|+|+..          .+ .-+....+-    +.+....++|+++..||+|.++..
T Consensus       205 FLDTPGHaAF~aMRaRGA~vtDIvVLVVAa----------dD-GVmpQT~Ea----IkhAk~A~VpiVvAinKiDkp~a~  269 (683)
T KOG1145|consen  205 FLDTPGHAAFSAMRARGANVTDIVVLVVAA----------DD-GVMPQTLEA----IKHAKSANVPIVVAINKIDKPGAN  269 (683)
T ss_pred             EecCCcHHHHHHHHhccCccccEEEEEEEc----------cC-CccHhHHHH----HHHHHhcCCCEEEEEeccCCCCCC
Confidence            369999999999887544556888999987          22 222223222    233345689999999999988654


Q ss_pred             H
Q psy12099         81 V   81 (174)
Q Consensus        81 ~   81 (174)
                      .
T Consensus       270 p  270 (683)
T KOG1145|consen  270 P  270 (683)
T ss_pred             H
Confidence            3

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.28  E-value=0.0019  Score=46.48  Aligned_cols=97  Identities=20%  Similarity=0.282  Sum_probs=57.6

Q ss_pred             eeCCCCchhhhhHh----hhhcCCCEEEEEEeCCCccccccCCCCcch-HHHHHHHHHHHHcCCCCCCCcEEEEEeCCch
Q psy12099          2 FDVGGQRDERRKWI----QCFNDVTAIIFVTACSSYNMVLREDPTQNR-LRESLDLFKSIWNNRWLRTISVILFLNKQDL   76 (174)
Q Consensus         2 wD~~Gq~~~r~~w~----~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~-~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl   76 (174)
                      .||.|-=-+.+.+-    ..-.+|+.|++|.|.          ++..+ +--.   |..+     + +.|++=|.||+|+
T Consensus        41 IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da----------t~~~~~~pP~---fa~~-----f-~~pvIGVITK~Dl  101 (143)
T PF10662_consen   41 IDTPGEYIENPRFYHALIVTAQDADVVLLLQDA----------TEPRSVFPPG---FASM-----F-NKPVIGVITKIDL  101 (143)
T ss_pred             EECChhheeCHHHHHHHHHHHhhCCEEEEEecC----------CCCCccCCch---hhcc-----c-CCCEEEEEECccC
Confidence            47777533332222    223489999999999          33322 1100   1111     1 4699999999999


Q ss_pred             hhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHH
Q psy12099         77 LAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVF  156 (174)
Q Consensus        77 ~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f  156 (174)
                      ....                               .+.+.|.++++.          +.-+.  ++++||.++++|+++.
T Consensus       102 ~~~~-------------------------------~~i~~a~~~L~~----------aG~~~--if~vS~~~~eGi~eL~  138 (143)
T PF10662_consen  102 PSDD-------------------------------ANIERAKKWLKN----------AGVKE--IFEVSAVTGEGIEELK  138 (143)
T ss_pred             ccch-------------------------------hhHHHHHHHHHH----------cCCCC--eEEEECCCCcCHHHHH
Confidence            8211                               123344444432          22233  4789999999999998


Q ss_pred             HHHH
Q psy12099        157 NDCR  160 (174)
Q Consensus       157 ~~~~  160 (174)
                      +.|.
T Consensus       139 ~~L~  142 (143)
T PF10662_consen  139 DYLE  142 (143)
T ss_pred             HHHh
Confidence            8775

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01856 YlqF YlqF

Probab=97.27  E-value=0.001  Score=49.04  Aligned_cols=50  Identities=28%  Similarity=0.189  Sum_probs=30.6

Q ss_pred             hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099         12 RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus        12 ~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      ..-.....++|.+++|+|.+          ....-. .......      ..+.|+++++||+|+..
T Consensus        11 ~~~~~~i~~aD~il~v~D~~----------~~~~~~-~~~i~~~------~~~k~~ilVlNK~Dl~~   60 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDAR----------IPLSSR-NPLLEKI------LGNKPRIIVLNKADLAD   60 (171)
T ss_pred             HHHHHHHhhCCEEEEEeecc----------CccCcC-ChhhHhH------hcCCCEEEEEehhhcCC
Confidence            33345678999999999994          221100 0111111      12468999999999864

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01850 CDC_Septin CDC/Septin

Probab=97.24  E-value=0.00054  Score=54.64  Aligned_cols=77  Identities=19%  Similarity=0.277  Sum_probs=42.6

Q ss_pred             chhhhhHhhhhcC--CCEEEEEEeCCCccccccCCCCcchHHH-HHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH-Hhc
Q psy12099          8 RDERRKWIQCFND--VTAIIFVTACSSYNMVLREDPTQNRLRE-SLDLFKSIWNNRWLRTISVILFLNKQDLLAEK-VKA   83 (174)
Q Consensus         8 ~~~r~~w~~y~~~--~~~ii~v~d~s~~~~~~~e~~~~~~~~~-~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~-~~~   83 (174)
                      +..+..+..++.+  +++++|+++.          +. ..+.. -++.++.+..     .+|+++|+||+|+..+. +..
T Consensus       100 ~e~~~~r~~~~~d~rvh~~ly~i~~----------~~-~~l~~~D~~~lk~l~~-----~v~vi~VinK~D~l~~~e~~~  163 (276)
T cd01850         100 EESRIKRNPRIPDTRVHACLYFIEP----------TG-HGLKPLDIEFMKRLSK-----RVNIIPVIAKADTLTPEELKE  163 (276)
T ss_pred             HHhhhcccccCCCCceEEEEEEEeC----------CC-CCCCHHHHHHHHHHhc-----cCCEEEEEECCCcCCHHHHHH
Confidence            3333344355554  6778888876          22 12222 2455555432     58999999999996421 111


Q ss_pred             cccchhhhhhccCCCCC
Q psy12099         84 GKSRLEDYFQEFTRYQT  100 (174)
Q Consensus        84 ~~~~l~~~~~~~~~~~~  100 (174)
                      ....+.+.+..++-..+
T Consensus       164 ~k~~i~~~l~~~~i~~~  180 (276)
T cd01850         164 FKQRIMEDIEEHNIKIY  180 (276)
T ss_pred             HHHHHHHHHHHcCCceE
Confidence            13456666666665433

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=97.15  E-value=0.00092  Score=56.36  Aligned_cols=100  Identities=19%  Similarity=0.257  Sum_probs=59.8

Q ss_pred             CeeCCCCchhh--------hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDER--------RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r--------~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      |.||||-+.-.        .+...-.+.||.|+||+|.+          .... ......+.     ....+.|+++|.|
T Consensus       269 l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~----------~~~~-~~d~~~~~-----~~~~~~~~i~v~N  332 (454)
T COG0486         269 LVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDAS----------QPLD-KEDLALIE-----LLPKKKPIIVVLN  332 (454)
T ss_pred             EEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCC----------CCCc-hhhHHHHH-----hcccCCCEEEEEe
Confidence            46999986432        12234567999999999994          3211 11112222     1235789999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIR  122 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~  122 (174)
                      |.||..+...   ..+ +..+.+  +....||++|+|.+...++..+++.
T Consensus       333 K~DL~~~~~~---~~~-~~~~~~--~~i~iSa~t~~Gl~~L~~~i~~~~~  376 (454)
T COG0486         333 KADLVSKIEL---ESE-KLANGD--AIISISAKTGEGLDALREAIKQLFG  376 (454)
T ss_pred             chhccccccc---chh-hccCCC--ceEEEEecCccCHHHHHHHHHHHHh
Confidence            9999875422   111 222222  3567899999997655555444443

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=97.07  E-value=0.00047  Score=47.25  Aligned_cols=56  Identities=5%  Similarity=0.015  Sum_probs=40.7

Q ss_pred             hhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099         11 RRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus        11 r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ......+++++++++.|++.          +..+++...  |...+.... -.+.|+++++||.|+..+
T Consensus        37 ~~~~~~~~~s~~~~~~v~~~----------~~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~   92 (124)
T smart00010       37 DVYDPTSYESFDVVLQCWRV----------DDRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEE   92 (124)
T ss_pred             hhccccccCCCCEEEEEEEc----------cCHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhh
Confidence            34456788999999999999          777777554  655554322 246889999999998543

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=96.96  E-value=0.0033  Score=50.07  Aligned_cols=47  Identities=21%  Similarity=0.212  Sum_probs=29.8

Q ss_pred             hhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099         15 IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus        15 ~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      ....+.+|.+|+|+|..          .+.+...  ..+...+     .+.|+++|+||+|+..
T Consensus        16 ~~~l~~aDvVl~V~Dar----------~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~   62 (276)
T TIGR03596        16 KEKLKLVDVVIEVLDAR----------IPLSSRN--PMIDEIR-----GNKPRLIVLNKADLAD   62 (276)
T ss_pred             HHHHhhCCEEEEEEeCC----------CCCCCCC--hhHHHHH-----CCCCEEEEEEccccCC
Confidence            34567999999999983          2211111  1122222     2579999999999853

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR00101 ureG urease accessory protein UreG

Probab=96.92  E-value=0.00072  Score=51.37  Aligned_cols=26  Identities=15%  Similarity=-0.032  Sum_probs=22.5

Q ss_pred             eeeeecccccchhHHHHHHHHHHHHH
Q psy12099        139 CYPHFTCAVDTENIRRVFNDCRDIIQ  164 (174)
Q Consensus       139 ~~~~~tsA~d~~~i~~~f~~~~~~i~  164 (174)
                      ..+++|||++|+||+++|+++.+..+
T Consensus       171 ~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       171 KPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            56789999999999999999987653

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK07560 elongation factor EF-2; Reviewed

Probab=96.92  E-value=0.0013  Score=59.18  Aligned_cols=64  Identities=19%  Similarity=0.304  Sum_probs=45.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +.||+|+..|.......++.+|++|+|+|..          ..- .......+......    +.|.+++.||+|+...
T Consensus        91 liDtPG~~df~~~~~~~l~~~D~avlVvda~----------~g~-~~~t~~~~~~~~~~----~~~~iv~iNK~D~~~~  154 (731)
T PRK07560         91 LIDTPGHVDFGGDVTRAMRAVDGAIVVVDAV----------EGV-MPQTETVLRQALRE----RVKPVLFINKVDRLIK  154 (731)
T ss_pred             EEcCCCccChHHHHHHHHHhcCEEEEEEECC----------CCC-CccHHHHHHHHHHc----CCCeEEEEECchhhcc
Confidence            4699999999887788889999999999983          221 12233444443332    3577899999998743

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=96.92  E-value=0.005  Score=52.23  Aligned_cols=65  Identities=15%  Similarity=0.216  Sum_probs=43.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |.||.|+.-|..--..-+.=+|++++++|.++           ..+-...-..+..+..    +.+-|+|.||.|.+.++
T Consensus        72 IvDTPGHADFGGEVERvl~MVDgvlLlVDA~E-----------GpMPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Ar  136 (603)
T COG1217          72 IVDTPGHADFGGEVERVLSMVDGVLLLVDASE-----------GPMPQTRFVLKKALAL----GLKPIVVINKIDRPDAR  136 (603)
T ss_pred             EecCCCcCCccchhhhhhhhcceEEEEEEccc-----------CCCCchhhhHHHHHHc----CCCcEEEEeCCCCCCCC
Confidence            57999998877766667778999999999942           1222222333444432    44556778999998765

>PTZ00416 elongation factor 2; Provisional

Probab=96.89  E-value=0.0017  Score=59.39  Aligned_cols=62  Identities=18%  Similarity=0.278  Sum_probs=46.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~   77 (174)
                      +.||+|+..|-.-...-++.+|++|+|+|..          ..- .......|+.+..    .+.|+++|.||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~----------~g~-~~~t~~~~~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCV----------EGV-CVQTETVLRQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECC----------CCc-CccHHHHHHHHHH----cCCCEEEEEEChhhh
Confidence            4699999988777777889999999999983          221 1223345555543    257999999999998

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.87  E-value=0.0037  Score=47.51  Aligned_cols=24  Identities=4%  Similarity=-0.132  Sum_probs=21.2

Q ss_pred             eeeeecccccchhHHHHHHHHHHH
Q psy12099        139 CYPHFTCAVDTENIRRVFNDCRDI  162 (174)
Q Consensus       139 ~~~~~tsA~d~~~i~~~f~~~~~~  162 (174)
                      ..++.+||+++.|++++|+++.+.
T Consensus       182 ~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       182 AEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            568899999999999999998764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=96.86  E-value=0.0019  Score=59.09  Aligned_cols=62  Identities=16%  Similarity=0.210  Sum_probs=46.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~   77 (174)
                      +.||+|+..|-.-...-.+.+|++|+|+|..          ..-. ......|+.+..    .+.|++++.||+|+.
T Consensus       102 liDtPGh~dF~~e~~~al~~~D~ailVvda~----------~Gv~-~~t~~~~~~~~~----~~~p~i~~iNK~D~~  163 (843)
T PLN00116        102 LIDSPGHVDFSSEVTAALRITDGALVVVDCI----------EGVC-VQTETVLRQALG----ERIRPVLTVNKMDRC  163 (843)
T ss_pred             EECCCCHHHHHHHHHHHHhhcCEEEEEEECC----------CCCc-ccHHHHHHHHHH----CCCCEEEEEECCccc
Confidence            4699999999887777889999999999983          2211 123344555543    368999999999998

>KOG1490|consensus

Probab=96.84  E-value=0.0036  Score=53.47  Aligned_cols=96  Identities=18%  Similarity=0.155  Sum_probs=63.3

Q ss_pred             CEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhccccchhhhhhccCCCCCC
Q psy12099         22 TAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTP  101 (174)
Q Consensus        22 ~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~  101 (174)
                      .+|+|+.|+|+-+        --+..+-..+|.++.  |.|.|.|+||++||+|+...      +++.            
T Consensus       249 aaVLYfmDLSe~C--------GySva~QvkLfhsIK--pLFaNK~~IlvlNK~D~m~~------edL~------------  300 (620)
T KOG1490|consen  249 SAVLYFMDLSEMC--------GYSVAAQVKLYHSIK--PLFANKVTILVLNKIDAMRP------EDLD------------  300 (620)
T ss_pred             hhheeeeechhhh--------CCCHHHHHHHHHHhH--HHhcCCceEEEeecccccCc------cccC------------
Confidence            5789999996421        245667788898874  56899999999999998642      2221            


Q ss_pred             CCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHHHHHHHhh
Q psy12099        102 LDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMH  167 (174)
Q Consensus       102 ~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~~~i~~~~  167 (174)
                                +.-++..+.+.            ....+.+.+||..+.+||-.|=....+.++...
T Consensus       301 ----------~~~~~ll~~~~------------~~~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~R  344 (620)
T KOG1490|consen  301 ----------QKNQELLQTII------------DDGNVKVVQTSCVQEEGVMDVRTTACEALLAAR  344 (620)
T ss_pred             ----------HHHHHHHHHHH------------hccCceEEEecccchhceeeHHHHHHHHHHHHH
Confidence                      11111222221            123367788999999988887777666666543

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=96.84  E-value=0.024  Score=42.52  Aligned_cols=104  Identities=12%  Similarity=0.275  Sum_probs=57.1

Q ss_pred             hhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhccccchhhhhhccC
Q psy12099         17 CFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFT   96 (174)
Q Consensus        17 y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~   96 (174)
                      ...+++++|||+++..+         ...-...++++..+.....  -.++++++|+.|....      ..+.++..+..
T Consensus        80 ~~~g~~~illVi~~~~~---------t~~d~~~l~~l~~~fg~~~--~~~~ivv~T~~d~l~~------~~~~~~~~~~~  142 (196)
T cd01852          80 SAPGPHAFLLVVPLGRF---------TEEEEQAVETLQELFGEKV--LDHTIVLFTRGDDLEG------GTLEDYLENSC  142 (196)
T ss_pred             cCCCCEEEEEEEECCCc---------CHHHHHHHHHHHHHhChHh--HhcEEEEEECccccCC------CcHHHHHHhcc
Confidence            35789999999998321         1222344555555544221  2478899999996542      23444433221


Q ss_pred             CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeec--ccccchhHHHHHHHHHHHHHH
Q psy12099         97 RYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFT--CAVDTENIRRVFNDCRDIIQR  165 (174)
Q Consensus        97 ~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~t--sA~d~~~i~~~f~~~~~~i~~  165 (174)
                                            ..+.    .+...  ++.+-..+...  ++.++.++.++++.|.+.+..
T Consensus       143 ----------------------~~l~----~l~~~--c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         143 ----------------------EALK----RLLEK--CGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             ----------------------HHHH----HHHHH--hCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence                                  1111    11110  22232222222  478899999999999888765

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=96.77  E-value=0.0038  Score=52.03  Aligned_cols=31  Identities=19%  Similarity=0.323  Sum_probs=26.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCC
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACS   31 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s   31 (174)
                      |.|+.|++-|-+-...=...||++|+|+|++
T Consensus        89 IiDaPGHrdFvknmItGasqAD~aVLVV~a~  119 (428)
T COG5256          89 IIDAPGHRDFVKNMITGASQADVAVLVVDAR  119 (428)
T ss_pred             EeeCCchHHHHHHhhcchhhccEEEEEEECC
Confidence            5799999888887777778899999999994

>PRK01889 GTPase RsgA; Reviewed

Probab=96.66  E-value=0.015  Score=48.14  Aligned_cols=47  Identities=17%  Similarity=0.262  Sum_probs=27.9

Q ss_pred             cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099         19 NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus        19 ~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      .++|.+++|+++.         ++.+. . .++-+-.++.   ..+++.+||+||+||..+
T Consensus       111 ANvD~vliV~s~~---------p~~~~-~-~ldr~L~~a~---~~~i~piIVLNK~DL~~~  157 (356)
T PRK01889        111 ANVDTVFIVCSLN---------HDFNL-R-RIERYLALAW---ESGAEPVIVLTKADLCED  157 (356)
T ss_pred             EeCCEEEEEEecC---------CCCCh-h-HHHHHHHHHH---HcCCCEEEEEEChhcCCC
Confidence            5789999999992         12221 1 1122222222   236777899999999643

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=96.63  E-value=0.0083  Score=48.08  Aligned_cols=46  Identities=22%  Similarity=0.234  Sum_probs=29.6

Q ss_pred             hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099         16 QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus        16 ~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      .-...+|.+|+|+|..          .+.+...  ..+...+.     +.|+++|+||+|+..
T Consensus        20 ~~l~~aDvIL~VvDar----------~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~   65 (287)
T PRK09563         20 ENLKLVDVVIEVLDAR----------IPLSSEN--PMIDKIIG-----NKPRLLILNKSDLAD   65 (287)
T ss_pred             HHhhhCCEEEEEEECC----------CCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCC
Confidence            3567999999999983          2211111  12233332     579999999999853

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.35  E-value=0.017  Score=39.43  Aligned_cols=56  Identities=21%  Similarity=0.369  Sum_probs=34.7

Q ss_pred             CeeCCCCch----------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEE
Q psy12099          1 MFDVGGQRD----------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILF   70 (174)
Q Consensus         1 iwD~~Gq~~----------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv   70 (174)
                      ++||+|-..          ++..+. ..+.++++|||+|.          ..... ......++.+ +    .+.|+++|
T Consensus        51 ~vDtpG~~~~~~~~~~~~~~~~~~~-~~~~~d~ii~vv~~----------~~~~~-~~~~~~~~~l-~----~~~~~i~v  113 (116)
T PF01926_consen   51 LVDTPGINDGESQDNDGKEIRKFLE-QISKSDLIIYVVDA----------SNPIT-EDDKNILREL-K----NKKPIILV  113 (116)
T ss_dssp             EEESSSCSSSSHHHHHHHHHHHHHH-HHCTESEEEEEEET----------TSHSH-HHHHHHHHHH-H----TTSEEEEE
T ss_pred             EEeCCCCcccchhhHHHHHHHHHHH-HHHHCCEEEEEEEC----------CCCCC-HHHHHHHHHH-h----cCCCEEEE
Confidence            579988632          122333 34799999999998          44211 2223333443 2    57899999


Q ss_pred             EeC
Q psy12099         71 LNK   73 (174)
Q Consensus        71 ~NK   73 (174)
                      +||
T Consensus       114 ~NK  116 (116)
T PF01926_consen  114 LNK  116 (116)
T ss_dssp             EES
T ss_pred             EcC
Confidence            998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>KOG0705|consensus

Probab=96.27  E-value=0.014  Score=50.43  Aligned_cols=102  Identities=21%  Similarity=0.249  Sum_probs=69.7

Q ss_pred             hhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhccccchhhhhhc
Q psy12099         15 IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQE   94 (174)
Q Consensus        15 ~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~   94 (174)
                      ..|-.-++++||||.+          .+.++++....+...+........+|+++++.+. .......  ...       
T Consensus        90 aQft~wvdavIfvf~~----------~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd-~iS~~~~--rv~-------  149 (749)
T KOG0705|consen   90 AQFCQWVDAVVFVFSV----------EDEQSFQAVQALAHEMSSYRNISDLPLILVGTQD-HISAKRP--RVI-------  149 (749)
T ss_pred             hhhhhhccceEEEEEe----------ccccCHHHHHHHHhhcccccccccchHHhhcCcc-hhhcccc--ccc-------
Confidence            4566789999999999          8999999888877777655444567888877653 3222222  000       


Q ss_pred             cCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHHHHHHHh
Q psy12099         95 FTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRM  166 (174)
Q Consensus        95 ~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~~~i~~~  166 (174)
                                        ....+....            ++.++..++++||+.|.|+..+|..+...++..
T Consensus       150 ------------------~da~~r~l~------------~~~krcsy~et~atyGlnv~rvf~~~~~k~i~~  191 (749)
T KOG0705|consen  150 ------------------TDDRARQLS------------AQMKRCSYYETCATYGLNVERVFQEVAQKIVQL  191 (749)
T ss_pred             ------------------chHHHHHHH------------HhcCccceeecchhhhhhHHHHHHHHHHHHHHH
Confidence                              111122221            234567788999999999999999999877654

>COG0218 Predicted GTPase [General function prediction only]

Probab=96.24  E-value=0.053  Score=41.12  Aligned_cols=49  Identities=18%  Similarity=0.339  Sum_probs=30.3

Q ss_pred             hHhhhhc---CCCEEEEEEeCCCccccccCCCCcch-HH-HHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099         13 KWIQCFN---DVTAIIFVTACSSYNMVLREDPTQNR-LR-ESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus        13 ~w~~y~~---~~~~ii~v~d~s~~~~~~~e~~~~~~-~~-~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +..+|++   +-.+++.++|.          ...-. .+ +..+|+..       .++|+++++||+|...
T Consensus        96 ~i~~YL~~R~~L~~vvlliD~----------r~~~~~~D~em~~~l~~-------~~i~~~vv~tK~DKi~  149 (200)
T COG0218          96 LIEEYLEKRANLKGVVLLIDA----------RHPPKDLDREMIEFLLE-------LGIPVIVVLTKADKLK  149 (200)
T ss_pred             HHHHHHhhchhheEEEEEEEC----------CCCCcHHHHHHHHHHHH-------cCCCeEEEEEccccCC
Confidence            3356765   45788888998          22221 11 22333332       3789999999999765

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=96.19  E-value=0.02  Score=46.66  Aligned_cols=109  Identities=15%  Similarity=0.155  Sum_probs=67.1

Q ss_pred             eeCCCCchhhhhHhhhhcCC---CEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          2 FDVGGQRDERRKWIQCFNDV---TAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         2 wD~~Gq~~~r~~w~~y~~~~---~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      .|..|+|-.-   ...+.++   |++|+|++..   +++.+....+.       +-.+ .-  +.-..++++-||.||..
T Consensus        91 VDaPGHe~LM---ATMLsGAAlMDgAlLvIaAN---EpcPQPQT~EH-------l~Al-eI--igik~iiIvQNKIDlV~  154 (415)
T COG5257          91 VDAPGHETLM---ATMLSGAALMDGALLVIAAN---EPCPQPQTREH-------LMAL-EI--IGIKNIIIVQNKIDLVS  154 (415)
T ss_pred             eeCCchHHHH---HHHhcchhhhcceEEEEecC---CCCCCCchHHH-------HHHH-hh--hccceEEEEecccceec
Confidence            4777777533   3445554   8899999883   33322222222       2111 11  12246899999999986


Q ss_pred             HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099         79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND  158 (174)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~  158 (174)
                      +...                            -+++++.++|++...        +.  ...+.-+||..+.||+.+++.
T Consensus       155 ~E~A----------------------------lE~y~qIk~FvkGt~--------Ae--~aPIIPiSA~~~~NIDal~e~  196 (415)
T COG5257         155 RERA----------------------------LENYEQIKEFVKGTV--------AE--NAPIIPISAQHKANIDALIEA  196 (415)
T ss_pred             HHHH----------------------------HHHHHHHHHHhcccc--------cC--CCceeeehhhhccCHHHHHHH
Confidence            5322                            135677777765432        11  234567899999999999999


Q ss_pred             HHHHHH
Q psy12099        159 CRDIIQ  164 (174)
Q Consensus       159 ~~~~i~  164 (174)
                      +.+.|-
T Consensus       197 i~~~Ip  202 (415)
T COG5257         197 IEKYIP  202 (415)
T ss_pred             HHHhCC
Confidence            998773

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.09  E-value=0.068  Score=43.83  Aligned_cols=55  Identities=13%  Similarity=0.138  Sum_probs=30.1

Q ss_pred             eeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         2 wD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      .||+|-..-...   ...-+|.++++.+.          .....+.....   .++.      ..-++|.||.|+..
T Consensus       154 ieT~Gv~qs~~~---i~~~aD~vlvv~~p----------~~gd~iq~~k~---gi~E------~aDIiVVNKaDl~~  208 (332)
T PRK09435        154 VETVGVGQSETA---VAGMVDFFLLLQLP----------GAGDELQGIKK---GIME------LADLIVINKADGDN  208 (332)
T ss_pred             EECCCCccchhH---HHHhCCEEEEEecC----------CchHHHHHHHh---hhhh------hhheEEeehhcccc
Confidence            567776522211   34568998888754          33333333221   1221      22379999999864

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=96.07  E-value=0.038  Score=45.54  Aligned_cols=62  Identities=18%  Similarity=0.257  Sum_probs=39.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH--HHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD--LFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~--~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      |=||.|++.|-+-...=-..|+.+|+++|.           ...-++.+..  .+..++     .-..++|..||+||.+
T Consensus        90 iADTPGHeQYTRNMaTGASTadlAIlLVDA-----------R~Gvl~QTrRHs~I~sLL-----GIrhvvvAVNKmDLvd  153 (431)
T COG2895          90 IADTPGHEQYTRNMATGASTADLAILLVDA-----------RKGVLEQTRRHSFIASLL-----GIRHVVVAVNKMDLVD  153 (431)
T ss_pred             EecCCcHHHHhhhhhcccccccEEEEEEec-----------chhhHHHhHHHHHHHHHh-----CCcEEEEEEeeecccc
Confidence            359999998865444334567899999998           3333333321  122222     2347888899999975

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.00  E-value=0.039  Score=44.48  Aligned_cols=16  Identities=31%  Similarity=0.268  Sum_probs=13.1

Q ss_pred             CCcEEEEEeCCchhhH
Q psy12099         64 TISVILFLNKQDLLAE   79 (174)
Q Consensus        64 ~~~iilv~NK~Dl~~~   79 (174)
                      +.|.++++||+|+...
T Consensus       172 ~~~~ivv~NK~Dl~~~  187 (300)
T TIGR00750       172 EIADIYVVNKADGEGA  187 (300)
T ss_pred             hhccEEEEEcccccch
Confidence            5677999999999754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG0468|consensus

Probab=96.00  E-value=0.017  Score=51.10  Aligned_cols=65  Identities=12%  Similarity=0.203  Sum_probs=47.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |.||.|+-.|..-...-++-+|++++|+|+.          +--. ...-..++..++    .+.|+++++||.|+.-..
T Consensus       201 ilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~----------EGVm-lntEr~ikhaiq----~~~~i~vviNKiDRLilE  265 (971)
T KOG0468|consen  201 ILDTPGHVNFSDETTASLRLSDGVVLVVDVA----------EGVM-LNTERIIKHAIQ----NRLPIVVVINKVDRLILE  265 (971)
T ss_pred             eecCCCcccchHHHHHHhhhcceEEEEEEcc----------cCce-eeHHHHHHHHHh----ccCcEEEEEehhHHHHHH
Confidence            5799999999888888889999999999993          2222 222233344443    368999999999987543

>KOG1423|consensus

Probab=95.85  E-value=0.058  Score=43.72  Aligned_cols=49  Identities=27%  Similarity=0.416  Sum_probs=31.7

Q ss_pred             hcCCCEEEEEEeCCCccccccCCCCcchHH-HHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHH
Q psy12099         18 FNDVTAIIFVTACSSYNMVLREDPTQNRLR-ESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKV   81 (174)
Q Consensus        18 ~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~-~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~   81 (174)
                      ...||+++.++|.++         .+.-+. ..+..++.      ..++|-+|+.||.|....+.
T Consensus       153 ~q~AD~vvVv~Das~---------tr~~l~p~vl~~l~~------ys~ips~lvmnkid~~k~k~  202 (379)
T KOG1423|consen  153 AQNADCVVVVVDASA---------TRTPLHPRVLHMLEE------YSKIPSILVMNKIDKLKQKR  202 (379)
T ss_pred             HhhCCEEEEEEeccC---------CcCccChHHHHHHHH------HhcCCceeeccchhcchhhh
Confidence            457999999999952         222222 12222232      24678899999999987763

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=95.40  E-value=0.02  Score=51.26  Aligned_cols=65  Identities=17%  Similarity=0.227  Sum_probs=47.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +.||.|+=-|-.--..-++-+|++|.|+|..           ..-...+...|+....    .++|.++|.||+|.....
T Consensus        80 lIDTPGHVDFt~EV~rslrvlDgavvVvdav-----------eGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~a~  144 (697)
T COG0480          80 LIDTPGHVDFTIEVERSLRVLDGAVVVVDAV-----------EGVEPQTETVWRQADK----YGVPRILFVNKMDRLGAD  144 (697)
T ss_pred             EeCCCCccccHHHHHHHHHhhcceEEEEECC-----------CCeeecHHHHHHHHhh----cCCCeEEEEECccccccC
Confidence            4699999777776677778899999999982           2222234455666544    378999999999987554

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=95.29  E-value=0.13  Score=43.47  Aligned_cols=64  Identities=19%  Similarity=0.234  Sum_probs=39.8

Q ss_pred             eeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         2 wD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      .|+.|++++-+--..=..+.+++++|++.          + ..-.....+.+.- ++.  +.....++++||+|+.++
T Consensus        55 IDvpgh~~~i~~miag~~~~d~alLvV~~----------d-eGl~~qtgEhL~i-Ldl--lgi~~giivltk~D~~d~  118 (447)
T COG3276          55 IDVPGHPDFISNLLAGLGGIDYALLVVAA----------D-EGLMAQTGEHLLI-LDL--LGIKNGIIVLTKADRVDE  118 (447)
T ss_pred             eeCCCcHHHHHHHHhhhcCCceEEEEEeC----------c-cCcchhhHHHHHH-HHh--cCCCceEEEEeccccccH
Confidence            58889887765444445688999999998          2 2222222222222 121  234467899999999865

>KOG3905|consensus

Probab=95.29  E-value=0.4  Score=39.36  Aligned_cols=26  Identities=15%  Similarity=0.103  Sum_probs=22.4

Q ss_pred             eeeeecccccchhHHHHHHHHHHHHH
Q psy12099        139 CYPHFTCAVDTENIRRVFNDCRDIIQ  164 (174)
Q Consensus       139 ~~~~~tsA~d~~~i~~~f~~~~~~i~  164 (174)
                      ...++||++.+.|++-++..|...+.
T Consensus       265 aaLiyTSvKE~KNidllyKYivhr~y  290 (473)
T KOG3905|consen  265 AALIYTSVKETKNIDLLYKYIVHRSY  290 (473)
T ss_pred             ceeEEeecccccchHHHHHHHHHHhc
Confidence            45678999999999999999987765

>COG1084 Predicted GTPase [General function prediction only]

Probab=95.26  E-value=0.068  Score=43.52  Aligned_cols=47  Identities=21%  Similarity=0.347  Sum_probs=35.7

Q ss_pred             CCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099         21 VTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus        21 ~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      .++|+|++|.|+.+        -=++++-..+|+++...  +. .|+++|.||.|+..
T Consensus       248 ~~~IlF~~D~Se~c--------gy~lE~Q~~L~~eIk~~--f~-~p~v~V~nK~D~~~  294 (346)
T COG1084         248 AGVILFLFDPSETC--------GYSLEEQISLLEEIKEL--FK-APIVVVINKIDIAD  294 (346)
T ss_pred             cCeEEEEEcCcccc--------CCCHHHHHHHHHHHHHh--cC-CCeEEEEecccccc
Confidence            46799999997532        34566777888887654  44 89999999999873

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=95.24  E-value=0.069  Score=47.24  Aligned_cols=88  Identities=16%  Similarity=0.085  Sum_probs=60.8

Q ss_pred             hhHhhhh--cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhccccchh
Q psy12099         12 RKWIQCF--NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLE   89 (174)
Q Consensus        12 ~~w~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~   89 (174)
                      ....+|.  ..+|.+|-|+|.          ++.   +..+...-++++-    +.|+++++|+.|.-+++--  ..+..
T Consensus        71 ~Var~~ll~~~~D~ivnVvDA----------tnL---eRnLyltlQLlE~----g~p~ilaLNm~D~A~~~Gi--~ID~~  131 (653)
T COG0370          71 KVARDFLLEGKPDLIVNVVDA----------TNL---ERNLYLTLQLLEL----GIPMILALNMIDEAKKRGI--RIDIE  131 (653)
T ss_pred             HHHHHHHhcCCCCEEEEEccc----------chH---HHHHHHHHHHHHc----CCCeEEEeccHhhHHhcCC--cccHH
Confidence            3455665  367999999999          444   4455555555543    6789999999998766422  34555


Q ss_pred             hhhhccCCCCCCCCCCCCCCCChHHHHHH
Q psy12099         90 DYFQEFTRYQTPLDATPDPGEDPIVIRAK  118 (174)
Q Consensus        90 ~~~~~~~~~~~~~~a~~~~g~~~~~~~a~  118 (174)
                      +.-...+-+..+++|++|+|.++....+.
T Consensus       132 ~L~~~LGvPVv~tvA~~g~G~~~l~~~i~  160 (653)
T COG0370         132 KLSKLLGVPVVPTVAKRGEGLEELKRAII  160 (653)
T ss_pred             HHHHHhCCCEEEEEeecCCCHHHHHHHHH
Confidence            55566777889999999999655544443

>KOG0458|consensus

Probab=95.05  E-value=0.018  Score=49.91  Aligned_cols=68  Identities=24%  Similarity=0.294  Sum_probs=37.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCcc--ccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYN--MVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~--~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~   77 (174)
                      |.|..|+.-|-.-...=-..+|..|+|+|++- +  +.-++  ..+...+...+++.      +.-..++++.||+|+.
T Consensus       259 liDaPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd--~~gQtrEha~llr~------Lgi~qlivaiNKmD~V  328 (603)
T KOG0458|consen  259 LIDAPGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFD--PGGQTREHALLLRS------LGISQLIVAINKMDLV  328 (603)
T ss_pred             EecCCCccccchhhhccccccceEEEEEECCc-chhhhccC--CCCchHHHHHHHHH------cCcceEEEEeeccccc
Confidence            35777876665444433346789999999941 0  00001  11122222222222      2345889999999986

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=94.91  E-value=0.048  Score=46.13  Aligned_cols=63  Identities=24%  Similarity=0.420  Sum_probs=45.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +.||.|++-|..=.-.-+..+|++|.|+|.+         .-.+  ...+++|+ +++   +.++||+-+.||+|...
T Consensus        85 LLDTPGHeDFSEDTYRtLtAvDsAvMVIDaA---------KGiE--~qT~KLfe-Vcr---lR~iPI~TFiNKlDR~~  147 (528)
T COG4108          85 LLDTPGHEDFSEDTYRTLTAVDSAVMVIDAA---------KGIE--PQTLKLFE-VCR---LRDIPIFTFINKLDREG  147 (528)
T ss_pred             ccCCCCccccchhHHHHHHhhheeeEEEecc---------cCcc--HHHHHHHH-HHh---hcCCceEEEeecccccc
Confidence            5799999988766555567899999999994         2221  12334443 343   57899999999999864

>KOG3887|consensus

Probab=94.87  E-value=0.57  Score=36.97  Aligned_cols=120  Identities=21%  Similarity=0.231  Sum_probs=68.6

Q ss_pred             CeeCCCCchhhhh---HhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC-CCCCCCcEEEEEeCCch
Q psy12099          1 MFDVGGQRDERRK---WIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN-RWLRTISVILFLNKQDL   76 (174)
Q Consensus         1 iwD~~Gq~~~r~~---w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~-~~~~~~~iilv~NK~Dl   76 (174)
                      +||.+||-.+-.-   ....|+++-+.|||+|.           ..+.++....+-.-+.+. .-.+++-+=++..|.|.
T Consensus        79 v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDa-----------Qddy~eala~L~~~v~raykvNp~in~EVfiHKvDG  147 (347)
T KOG3887|consen   79 VWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDA-----------QDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDG  147 (347)
T ss_pred             EeecCCccccCCCccCHHHHHhccCeEEEEEec-----------hHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccC
Confidence            6999999655322   24568999999999998           233333332322222221 12457788899999998


Q ss_pred             hhHHHhcc-ccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHH
Q psy12099         77 LAEKVKAG-KSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRV  155 (174)
Q Consensus        77 ~~~~~~~~-~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~  155 (174)
                      ..+..+.. ...+                         .+.+.+-+++.        +-.+-++.+|.||-.|- .|-++
T Consensus       148 Lsdd~kietqrdI-------------------------~qr~~d~l~d~--------gle~v~vsf~LTSIyDH-SIfEA  193 (347)
T KOG3887|consen  148 LSDDFKIETQRDI-------------------------HQRTNDELADA--------GLEKVQVSFYLTSIYDH-SIFEA  193 (347)
T ss_pred             CchhhhhhhHHHH-------------------------HHHhhHHHHhh--------hhccceEEEEEeeecch-HHHHH
Confidence            86643310 0111                         11111112211        12345688899988875 46667


Q ss_pred             HHHHHHHHHH
Q psy12099        156 FNDCRDIIQR  165 (174)
Q Consensus       156 f~~~~~~i~~  165 (174)
                      |..+...++.
T Consensus       194 FSkvVQkLip  203 (347)
T KOG3887|consen  194 FSKVVQKLIP  203 (347)
T ss_pred             HHHHHHHHhh
Confidence            7766665543

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=94.78  E-value=0.35  Score=40.55  Aligned_cols=123  Identities=14%  Similarity=0.115  Sum_probs=66.3

Q ss_pred             eeCCCCchhhhhH--hhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          2 FDVGGQRDERRKW--IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         2 wD~~Gq~~~r~~w--~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      .||+|+|++-+-.  -..-+..|..++++..          ++- -..-..+.+--++.    ...|++++.+|+|+..+
T Consensus       206 VDtvGHEpwLrTtirGL~gqk~dYglLvVaA----------ddG-~~~~tkEHLgi~~a----~~lPviVvvTK~D~~~d  270 (527)
T COG5258         206 VDTVGHEPWLRTTIRGLLGQKVDYGLLVVAA----------DDG-VTKMTKEHLGIALA----MELPVIVVVTKIDMVPD  270 (527)
T ss_pred             EecCCccHHHHHHHHHHhccccceEEEEEEc----------cCC-cchhhhHhhhhhhh----hcCCEEEEEEecccCcH
Confidence            6999999986533  3344678999999987          222 22233333333322    36799999999998743


Q ss_pred             H-HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHH
Q psy12099         80 K-VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVF  156 (174)
Q Consensus        80 ~-~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f  156 (174)
                      . +......++..+.--+..+.+...      ..+.-.|..-++           ..+.-+.++.||+.+|++.+-+-
T Consensus       271 dr~~~v~~ei~~~Lk~v~Rip~~vk~------~~d~v~aa~a~k-----------~~~~vvPi~~tSsVTg~GldlL~  331 (527)
T COG5258         271 DRFQGVVEEISALLKRVGRIPLIVKD------TDDVVLAAKAMK-----------AGRGVVPIFYTSSVTGEGLDLLD  331 (527)
T ss_pred             HHHHHHHHHHHHHHHHhcccceeeec------cchhHHhhhhhh-----------cCCceEEEEEEecccCccHHHHH
Confidence            3 221112333333322222222110      001111111111           22336788999999999876443

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=94.69  E-value=0.36  Score=34.20  Aligned_cols=98  Identities=22%  Similarity=0.333  Sum_probs=58.0

Q ss_pred             eeCCCCchhhhhHhhh----hcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099          2 FDVGGQRDERRKWIQC----FNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL   77 (174)
Q Consensus         2 wD~~Gq~~~r~~w~~y----~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~   77 (174)
                      .||.|---..+.|-|-    ..+++.+++|-..          +++.+.      |-.....  .-..|+|=+.+|.||.
T Consensus        42 IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a----------nd~~s~------f~p~f~~--~~~k~vIgvVTK~DLa  103 (148)
T COG4917          42 IDTPGEYFEHPRWYHALITTLQDADVIIYVHAA----------NDPESR------FPPGFLD--IGVKKVIGVVTKADLA  103 (148)
T ss_pred             cCCchhhhhhhHHHHHHHHHhhccceeeeeecc----------cCcccc------CCccccc--ccccceEEEEeccccc
Confidence            3666654444556332    3588889999888          555331      1111111  1234688888999998


Q ss_pred             hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099         78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN  157 (174)
Q Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~  157 (174)
                      +..                                +++.++.|+..          ++.  -.++++||.|.++|++++.
T Consensus       104 ed~--------------------------------dI~~~~~~L~e----------aGa--~~IF~~s~~d~~gv~~l~~  139 (148)
T COG4917         104 EDA--------------------------------DISLVKRWLRE----------AGA--EPIFETSAVDNQGVEELVD  139 (148)
T ss_pred             chH--------------------------------hHHHHHHHHHH----------cCC--cceEEEeccCcccHHHHHH
Confidence            421                                12233334332          222  2467899999999999998


Q ss_pred             HHHH
Q psy12099        158 DCRD  161 (174)
Q Consensus       158 ~~~~  161 (174)
                      .+..
T Consensus       140 ~L~~  143 (148)
T COG4917         140 YLAS  143 (148)
T ss_pred             HHHh
Confidence            7753

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=94.67  E-value=0.086  Score=38.08  Aligned_cols=60  Identities=17%  Similarity=0.279  Sum_probs=37.4

Q ss_pred             CeeCCCCc----hhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCC
Q psy12099          1 MFDVGGQR----DERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQ   74 (174)
Q Consensus         1 iwD~~Gq~----~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~   74 (174)
                      +.||.|-.    ....++..|+..++++|||.+.          +..-+-.+. ..+......   ....+++|.||.
T Consensus       105 lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~----------~~~~~~~~~-~~l~~~~~~---~~~~~i~V~nk~  168 (168)
T PF00350_consen  105 LVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDA----------NQDLTESDM-EFLKQMLDP---DKSRTIFVLNKA  168 (168)
T ss_dssp             EEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEET----------TSTGGGHHH-HHHHHHHTT---TCSSEEEEEE-G
T ss_pred             EEeCCccccchhhhHHHHHHhhccCCEEEEEecc----------CcccchHHH-HHHHHHhcC---CCCeEEEEEcCC
Confidence            46777763    2346789999999999999999          443332333 333333332   233488888984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>cd01882 BMS1 Bms1

Probab=94.54  E-value=0.36  Score=37.19  Aligned_cols=59  Identities=10%  Similarity=0.155  Sum_probs=33.0

Q ss_pred             eeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099          2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA   78 (174)
Q Consensus         2 wD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~   78 (174)
                      .||+|.-  ..+. ...+.++.+++++|.+          ..... .....+.. +..   .+.| ++++.||.|+..
T Consensus        88 vDtPg~~--~~~l-~~ak~aDvVllviDa~----------~~~~~-~~~~i~~~-l~~---~g~p~vi~VvnK~D~~~  147 (225)
T cd01882          88 IECPNDI--NAMI-DIAKVADLVLLLIDAS----------FGFEM-ETFEFLNI-LQV---HGFPRVMGVLTHLDLFK  147 (225)
T ss_pred             EeCCchH--HHHH-HHHHhcCEEEEEEecC----------cCCCH-HHHHHHHH-HHH---cCCCeEEEEEeccccCC
Confidence            5777743  2222 2357899999999983          22111 11222332 222   2356 455999999863

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG1143|consensus

Probab=94.46  E-value=0.16  Score=42.46  Aligned_cols=123  Identities=14%  Similarity=0.129  Sum_probs=67.6

Q ss_pred             CeeCCCCchhhhhHhhhhcC--CCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFND--VTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~--~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +.|++|+.+|.+-..+-+.+  .+++++|++.          . ..--....+.+.-+..    -++|+.++.+|+|+..
T Consensus       253 fiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA----------~-~Gi~~tTrEHLgl~~A----L~iPfFvlvtK~Dl~~  317 (591)
T KOG1143|consen  253 FIDLAGHAKYQKTTIHGLTGYTPHFACLVVSA----------D-RGITWTTREHLGLIAA----LNIPFFVLVTKMDLVD  317 (591)
T ss_pred             EeecccchhhheeeeeecccCCCceEEEEEEc----------C-CCCccccHHHHHHHHH----hCCCeEEEEEeecccc
Confidence            36999999998877665543  4677777776          1 1111111222222221    2789999999999986


Q ss_pred             HHHh-ccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHH
Q psy12099         79 EKVK-AGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRR  154 (174)
Q Consensus        79 ~~~~-~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~  154 (174)
                      ..-. ..-.+++......+..-.|--   =+..++.+.+|.+-             +....+.++-.|..+|++++-
T Consensus       318 ~~~~~~tv~~l~nll~~~Gc~kvp~~---Vt~~ddAv~Aaq~~-------------~s~nivPif~vSsVsGegl~l  378 (591)
T KOG1143|consen  318 RQGLKKTVKDLSNLLAKAGCTKVPKR---VTTKDDAVKAAQEL-------------CSGNIVPIFAVSSVSGEGLRL  378 (591)
T ss_pred             chhHHHHHHHHHHHHhhcCccccceE---eechHHHHHHHHHh-------------ccCCceeEEEEeecCccchhH
Confidence            5211 002345545444443211110   02334455555543             233456777788888887653

>COG1162 Predicted GTPases [General function prediction only]

Probab=94.22  E-value=0.13  Score=41.59  Aligned_cols=18  Identities=39%  Similarity=0.588  Sum_probs=14.0

Q ss_pred             CCCcEEEEEeCCchhhHH
Q psy12099         63 RTISVILFLNKQDLLAEK   80 (174)
Q Consensus        63 ~~~~iilv~NK~Dl~~~~   80 (174)
                      .++..+|++||+||..+.
T Consensus       109 ~gi~pvIvlnK~DL~~~~  126 (301)
T COG1162         109 GGIEPVIVLNKIDLLDDE  126 (301)
T ss_pred             cCCcEEEEEEccccCcch
Confidence            467777889999998654

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=93.58  E-value=0.13  Score=41.47  Aligned_cols=25  Identities=12%  Similarity=-0.068  Sum_probs=21.4

Q ss_pred             ceeeeecccccchhHHHHHHHHHHH
Q psy12099        138 YCYPHFTCAVDTENIRRVFNDCRDI  162 (174)
Q Consensus       138 ~~~~~~tsA~d~~~i~~~f~~~~~~  162 (174)
                      ...++.+||+++++++++.+++.+.
T Consensus       263 ~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        263 EIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHh
Confidence            3567889999999999999999763

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=93.53  E-value=0.26  Score=46.94  Aligned_cols=72  Identities=18%  Similarity=0.354  Sum_probs=44.1

Q ss_pred             CeeCCC----Cc----hhhhhHhhhhc---------CCCEEEEEEeCCCccccccCCCCcchH---HHHHHHHHHHHcCC
Q psy12099          1 MFDVGG----QR----DERRKWIQCFN---------DVTAIIFVTACSSYNMVLREDPTQNRL---RESLDLFKSIWNNR   60 (174)
Q Consensus         1 iwD~~G----q~----~~r~~w~~y~~---------~~~~ii~v~d~s~~~~~~~e~~~~~~~---~~~~~~~~~i~~~~   60 (174)
                      ++||+|    |+    ..+..|..++.         ..+|||+++|+++.-.    .+...+.   ......+.++.+. 
T Consensus       165 liDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~----~~~~~~~~~a~~lR~rl~el~~~-  239 (1169)
T TIGR03348       165 LIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLT----ADPAERKAHARAIRQRLQELREQ-  239 (1169)
T ss_pred             EEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhC----CCHHHHHHHHHHHHHHHHHHHHH-
Confidence            478998    22    34567877654         6899999999953211    1111111   2233444554433 


Q ss_pred             CCCCCcEEEEEeCCchh
Q psy12099         61 WLRTISVILFLNKQDLL   77 (174)
Q Consensus        61 ~~~~~~iilv~NK~Dl~   77 (174)
                      .....||.|+++|+|+.
T Consensus       240 lg~~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       240 LGARFPVYLVLTKADLL  256 (1169)
T ss_pred             hCCCCCEEEEEecchhh
Confidence            23478999999999985

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG1424|consensus

Probab=93.43  E-value=0.22  Score=42.89  Aligned_cols=59  Identities=20%  Similarity=0.280  Sum_probs=35.5

Q ss_pred             hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHh
Q psy12099         10 ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVK   82 (174)
Q Consensus        10 ~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~   82 (174)
                      .|.+|. -.+-.|.||.++|.          -++ .|.....+-.-+ .. .......+|+.||.||......
T Consensus       165 WRQLWR-VlErSDivvqIVDA----------RnP-llfr~~dLe~Yv-ke-~d~~K~~~LLvNKaDLl~~~qr  223 (562)
T KOG1424|consen  165 WRQLWR-VLERSDIVVQIVDA----------RNP-LLFRSPDLEDYV-KE-VDPSKANVLLVNKADLLPPEQR  223 (562)
T ss_pred             HHHHHH-HHhhcceEEEEeec----------CCc-cccCChhHHHHH-hc-cccccceEEEEehhhcCCHHHH
Confidence            355665 34577999999999          333 222222222222 22 1245678899999999876543

>smart00053 DYNc Dynamin, GTPase

Probab=93.23  E-value=0.34  Score=37.95  Aligned_cols=54  Identities=20%  Similarity=0.178  Sum_probs=32.6

Q ss_pred             hhhHhhhhcCC-CEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099         11 RRKWIQCFNDV-TAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus        11 r~~w~~y~~~~-~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +.+...|.++. +.+++|+|..         .+... .+.....+.+-    ....+.++|+||.|...
T Consensus       152 ~~lv~~yi~~~~~IIL~Vvda~---------~d~~~-~d~l~ia~~ld----~~~~rti~ViTK~D~~~  206 (240)
T smart00053      152 KDMIKQFISKEECLILAVTPAN---------VDLAN-SDALKLAKEVD----PQGERTIGVITKLDLMD  206 (240)
T ss_pred             HHHHHHHHhCccCeEEEEEECC---------CCCCc-hhHHHHHHHHH----HcCCcEEEEEECCCCCC
Confidence            34567788854 5778888772         12221 12233333331    24679999999999864

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=92.91  E-value=0.71  Score=36.62  Aligned_cols=53  Identities=17%  Similarity=0.266  Sum_probs=31.9

Q ss_pred             CCCEEEEEEeCCCccccccCCCCcch-HH----HHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099         20 DVTAIIFVTACSSYNMVLREDPTQNR-LR----ESLDLFKSIWNNRWLRTISVILFLNKQDLL   77 (174)
Q Consensus        20 ~~~~ii~v~d~s~~~~~~~e~~~~~~-~~----~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~   77 (174)
                      ..+|||+++|+.+-   + ..+...+ +.    ....-+.++.+. .....||.|++||+|+.
T Consensus        25 PlnGvil~vs~~~L---l-~~~~~~r~l~~~a~~lR~rL~el~~~-lg~~~PVYvv~Tk~D~l   82 (266)
T PF14331_consen   25 PLNGVILTVSVDDL---L-NADEAERELEALARALRQRLEELQRT-LGVRLPVYVVFTKCDLL   82 (266)
T ss_pred             CCCEEEEEEEHHHH---h-cCChhhhHHHHHHHHHHHHHHHHHHH-hCCCCCeEeeeECCCcc
Confidence            57999999999432   1 1122222 22    223334444332 33578999999999985

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=92.67  E-value=0.11  Score=38.49  Aligned_cols=16  Identities=38%  Similarity=0.596  Sum_probs=13.6

Q ss_pred             CCcEEEEEeCCchhhH
Q psy12099         64 TISVILFLNKQDLLAE   79 (174)
Q Consensus        64 ~~~iilv~NK~Dl~~~   79 (174)
                      +.|+++++||+|+...
T Consensus        30 ~kp~IlVlNK~DL~~~   45 (172)
T cd04178          30 NKKLVLVLNKIDLVPK   45 (172)
T ss_pred             CCCEEEEEehhhcCCH
Confidence            5799999999999643

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG1191|consensus

Probab=92.66  E-value=0.52  Score=40.50  Aligned_cols=24  Identities=17%  Similarity=0.263  Sum_probs=18.4

Q ss_pred             ecccccchhHHHHHHHHHHHHHHh
Q psy12099        143 FTCAVDTENIRRVFNDCRDIIQRM  166 (174)
Q Consensus       143 ~tsA~d~~~i~~~f~~~~~~i~~~  166 (174)
                      ++|++++++++.+.+.+.+.....
T Consensus       429 ~vs~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  429 EVSCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             EeeechhhhHHHHHHHHHHHHHHh
Confidence            378888888888888887776654

>COG3596 Predicted GTPase [General function prediction only]

Probab=92.21  E-value=0.97  Score=36.19  Aligned_cols=124  Identities=9%  Similarity=0.127  Sum_probs=73.4

Q ss_pred             CeeCCCCch-------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q psy12099          1 MFDVGGQRD-------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNK   73 (174)
Q Consensus         1 iwD~~Gq~~-------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK   73 (174)
                      +||+.|-+.       +|.+...|....+-++.+.+.          .++. +.-....+++++....  +.+++++.|.
T Consensus        91 lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~----------~dra-L~~d~~f~~dVi~~~~--~~~~i~~VtQ  157 (296)
T COG3596          91 LWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKA----------DDRA-LGTDEDFLRDVIILGL--DKRVLFVVTQ  157 (296)
T ss_pred             EecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccC----------CCcc-ccCCHHHHHHHHHhcc--CceeEEEEeh
Confidence            699999876       788888899999988888888          3332 2223355666654422  3789999999


Q ss_pred             CchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHH
Q psy12099         74 QDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIR  153 (174)
Q Consensus        74 ~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~  153 (174)
                      +|....        ...|  ++++             ...-.+..+|+..+-..+.+.- ..-+  .++..++...-|++
T Consensus       158 ~D~a~p--------~~~W--~~~~-------------~~p~~a~~qfi~~k~~~~~~~~-q~V~--pV~~~~~r~~wgl~  211 (296)
T COG3596         158 ADRAEP--------GREW--DSAG-------------HQPSPAIKQFIEEKAEALGRLF-QEVK--PVVAVSGRLPWGLK  211 (296)
T ss_pred             hhhhcc--------cccc--cccc-------------CCCCHHHHHHHHHHHHHHHHHH-hhcC--CeEEeccccCccHH
Confidence            997432        1111  0110             1112235666666655554411 0112  23344567788888


Q ss_pred             HHHHHHHHHH
Q psy12099        154 RVFNDCRDII  163 (174)
Q Consensus       154 ~~f~~~~~~i  163 (174)
                      .+...+...+
T Consensus       212 ~l~~ali~~l  221 (296)
T COG3596         212 ELVRALITAL  221 (296)
T ss_pred             HHHHHHHHhC
Confidence            8887776554

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=91.41  E-value=0.37  Score=39.18  Aligned_cols=67  Identities=7%  Similarity=0.156  Sum_probs=35.9

Q ss_pred             CeeCCCCchhhhh-------Hhhhh--cCCCEEEEEEeCCCccccccCCCCcchH-HHHHHHHHHHHcCCCCCCCcEEEE
Q psy12099          1 MFDVGGQRDERRK-------WIQCF--NDVTAIIFVTACSSYNMVLREDPTQNRL-RESLDLFKSIWNNRWLRTISVILF   70 (174)
Q Consensus         1 iwD~~Gq~~~r~~-------w~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~-~~~~~~~~~i~~~~~~~~~~iilv   70 (174)
                      |+||+|.......       -..|.  .+.+++|||..+..        ...... ...++.+..+.....  -.+.+++
T Consensus        90 VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~--------~R~~~~DkqlLk~Iqe~FG~~i--w~~~IVV  159 (313)
T TIGR00991        90 IIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDA--------YRVDTLDGQVIRAITDSFGKDI--WRKSLVV  159 (313)
T ss_pred             EEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCc--------ccCCHHHHHHHHHHHHHhhhhh--hccEEEE
Confidence            6899998643211       11222  26899999977611        111111 123343444433221  1368999


Q ss_pred             EeCCchh
Q psy12099         71 LNKQDLL   77 (174)
Q Consensus        71 ~NK~Dl~   77 (174)
                      +++.|..
T Consensus       160 fTh~d~~  166 (313)
T TIGR00991       160 LTHAQFS  166 (313)
T ss_pred             EECCccC
Confidence            9999965

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=90.88  E-value=1.2  Score=32.68  Aligned_cols=61  Identities=21%  Similarity=0.150  Sum_probs=39.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      |.|++|.-...  -...+..++.+|+++..           +..++.....+++.+.+    .+.|+.+++||.|...
T Consensus        97 iiDtpp~~~~~--~~~~l~~aD~vliv~~~-----------~~~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~  157 (179)
T cd03110          97 IIDGPPGIGCP--VIASLTGADAALLVTEP-----------TPSGLHDLERAVELVRH----FGIPVGVVINKYDLND  157 (179)
T ss_pred             EEECcCCCcHH--HHHHHHcCCEEEEEecC-----------CcccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCc
Confidence            46888654322  23456889999999987           34455555555554432    1457889999999643

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>KOG1707|consensus

Probab=90.80  E-value=1.3  Score=38.79  Aligned_cols=65  Identities=9%  Similarity=0.200  Sum_probs=45.4

Q ss_pred             cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhccccchhhhhhccCC
Q psy12099         19 NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTR   97 (174)
Q Consensus        19 ~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~   97 (174)
                      ..|+.+.++||+          +++.++.-....++.--.   ....|+++++.|.|+.+..-.. ..+..+++.+++-
T Consensus       494 ~~cDv~~~~YDs----------S~p~sf~~~a~v~~~~~~---~~~~Pc~~va~K~dlDe~~Q~~-~iqpde~~~~~~i  558 (625)
T KOG1707|consen  494 AACDVACLVYDS----------SNPRSFEYLAEVYNKYFD---LYKIPCLMVATKADLDEVPQRY-SIQPDEFCRQLGL  558 (625)
T ss_pred             ceeeeEEEeccc----------CCchHHHHHHHHHHHhhh---ccCCceEEEeeccccchhhhcc-CCChHHHHHhcCC
Confidence            468999999999          677887766665554322   2578999999999997655221 2233677777764

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=90.61  E-value=0.65  Score=35.25  Aligned_cols=25  Identities=12%  Similarity=-0.073  Sum_probs=21.0

Q ss_pred             eeeeecccccchhHHHHHHHHHHHH
Q psy12099        139 CYPHFTCAVDTENIRRVFNDCRDII  163 (174)
Q Consensus       139 ~~~~~tsA~d~~~i~~~f~~~~~~i  163 (174)
                      ..+.+||+++|++++++++++....
T Consensus       176 ~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         176 APIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             CCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            5677899999999999999887643

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=90.26  E-value=3.2  Score=31.52  Aligned_cols=51  Identities=22%  Similarity=0.387  Sum_probs=31.1

Q ss_pred             hhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099         17 CFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus        17 y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +..+.+++|+|+.+..|         ...-...++++..+......  ..++|+++..|.+.
T Consensus        80 ~~~g~ha~llVi~~~r~---------t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~~~  130 (212)
T PF04548_consen   80 CSPGPHAFLLVIPLGRF---------TEEDREVLELLQEIFGEEIW--KHTIVVFTHADELE  130 (212)
T ss_dssp             TTT-ESEEEEEEETTB----------SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGGGT
T ss_pred             ccCCCeEEEEEEecCcc---------hHHHHHHHHHHHHHccHHHH--hHhhHHhhhccccc
Confidence            34689999999999321         11223455666776655433  25778888888654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=89.27  E-value=1.3  Score=36.07  Aligned_cols=82  Identities=18%  Similarity=0.276  Sum_probs=44.3

Q ss_pred             eeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH--
Q psy12099          2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE--   79 (174)
Q Consensus         2 wD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~--   79 (174)
                      .|+.|+.-|-+-...=--..|+.|+|++.++=       +-+.+-+..       +-.....-..+++|+||+|+.+.  
T Consensus        80 VDcPGHaDYvKNMItgAaqmDgAILVVsA~dG-------pmPqTrEHi-------LlarqvGvp~ivvflnK~Dmvdd~e  145 (394)
T COG0050          80 VDCPGHADYVKNMITGAAQMDGAILVVAATDG-------PMPQTREHI-------LLARQVGVPYIVVFLNKVDMVDDEE  145 (394)
T ss_pred             ccCCChHHHHHHHhhhHHhcCccEEEEEcCCC-------CCCcchhhh-------hhhhhcCCcEEEEEEecccccCcHH
Confidence            47788776654333222346899999988432       112221111       11111122357888899999852  


Q ss_pred             HHhccccchhhhhhccCC
Q psy12099         80 KVKAGKSRLEDYFQEFTR   97 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~   97 (174)
                      .+.-....+.+.+..|+.
T Consensus       146 llelVemEvreLLs~y~f  163 (394)
T COG0050         146 LLELVEMEVRELLSEYGF  163 (394)
T ss_pred             HHHHHHHHHHHHHHHcCC
Confidence            222113567777777764

>KOG2423|consensus

Probab=89.10  E-value=1.3  Score=37.48  Aligned_cols=59  Identities=22%  Similarity=0.337  Sum_probs=39.2

Q ss_pred             CCchhhhhHhhhhc---CCCEEEEEEeCCCccccccCCCCc--chHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          6 GQRDERRKWIQCFN---DVTAIIFVTACSSYNMVLREDPTQ--NRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         6 Gq~~~r~~w~~y~~---~~~~ii~v~d~s~~~~~~~e~~~~--~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||.  .++|.-.|.   ..|++|=|.|.          .++  .+-    ..++..+... -+...+++|+||+||.-.-
T Consensus       198 GQS--kRIW~ELyKViDSSDVvvqVlDA----------RDPmGTrc----~~ve~ylkke-~phKHli~vLNKvDLVPtw  260 (572)
T KOG2423|consen  198 GQS--KRIWGELYKVIDSSDVVVQVLDA----------RDPMGTRC----KHVEEYLKKE-KPHKHLIYVLNKVDLVPTW  260 (572)
T ss_pred             cch--hHHHHHHHHhhcccceeEEeeec----------cCCccccc----HHHHHHHhhc-CCcceeEEEeeccccccHH
Confidence            554  578988775   77899999998          333  222    2233444432 3567899999999997544


Q ss_pred             H
Q psy12099         81 V   81 (174)
Q Consensus        81 ~   81 (174)
                      +
T Consensus       261 v  261 (572)
T KOG2423|consen  261 V  261 (572)
T ss_pred             H
Confidence            3

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=88.97  E-value=0.95  Score=35.45  Aligned_cols=59  Identities=24%  Similarity=0.238  Sum_probs=39.2

Q ss_pred             eeC-CCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099          2 FDV-GGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL   77 (174)
Q Consensus         2 wD~-~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~   77 (174)
                      .|| ||-|.|.+...   +++|.+|.|+|-           +..++..+ +-+..+.+.-.  =.+|.+++||.|-.
T Consensus       139 vDtEAGiEHfgRg~~---~~vD~vivVvDp-----------S~~sl~ta-eri~~L~~elg--~k~i~~V~NKv~e~  198 (255)
T COG3640         139 VDTEAGIEHFGRGTI---EGVDLVIVVVDP-----------SYKSLRTA-ERIKELAEELG--IKRIFVVLNKVDEE  198 (255)
T ss_pred             Eecccchhhhccccc---cCCCEEEEEeCC-----------cHHHHHHH-HHHHHHHHHhC--CceEEEEEeeccch
Confidence            455 77777665544   699999999998           34444443 33444444322  35899999999965

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=86.92  E-value=1.1  Score=35.66  Aligned_cols=22  Identities=18%  Similarity=0.209  Sum_probs=15.0

Q ss_pred             eeeecccccchhHHHHHHHHHH
Q psy12099        140 YPHFTCAVDTENIRRVFNDCRD  161 (174)
Q Consensus       140 ~~~~tsA~d~~~i~~~f~~~~~  161 (174)
                      .+..|||..+.+|.++++.|.+
T Consensus       206 pV~~tsA~~~~Gi~eL~~~i~~  227 (266)
T PF03308_consen  206 PVLKTSALEGEGIDELWEAIDE  227 (266)
T ss_dssp             EEEEEBTTTTBSHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHH
Confidence            5556777777777777766654

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG0447|consensus

Probab=86.87  E-value=4.6  Score=35.69  Aligned_cols=102  Identities=17%  Similarity=0.181  Sum_probs=56.8

Q ss_pred             chhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhccccc
Q psy12099          8 RDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSR   87 (174)
Q Consensus         8 ~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~   87 (174)
                      +...++..+|+++.++||+|+--..        -+.++     .....++........--|+|++|.|+.++.+.. +.+
T Consensus       436 d~I~~msKayM~NPNAIILCIQDGS--------VDAER-----SnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~-PdR  501 (980)
T KOG0447|consen  436 ETIFSISKAYMQNPNAIILCIQDGS--------VDAER-----SIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVAS-PSR  501 (980)
T ss_pred             HHHHHHHHHHhcCCCeEEEEeccCC--------cchhh-----hhHHHHHHhcCCCCCeeEEEEeecchhhhccCC-HHH
Confidence            3445788999999999999984311        12222     223344444344456778889999998764331 334


Q ss_pred             hhhhhhccCCCCCCCCC------CCCCCCC-hHHHHHHHHHHHHHH
Q psy12099         88 LEDYFQEFTRYQTPLDA------TPDPGED-PIVIRAKYFIRDEFL  126 (174)
Q Consensus        88 l~~~~~~~~~~~~~~~a------~~~~g~~-~~~~~a~~~i~~~f~  126 (174)
                      +++...   |..+|-.|      .||.|.. +++++..+|=.+-|.
T Consensus       502 I~kIle---GKLFPMKALGYfaVVTGrGnssdSIdaIR~YEE~FF~  544 (980)
T KOG0447|consen  502 IQQIIE---GKLFPMKALGYFAVVTGKGNSSESIEAIREYEEEFFQ  544 (980)
T ss_pred             HHHHHh---cCccchhhcceeEEEecCCCcchhHHHHHHHHHHHhh
Confidence            443321   11122222      3555544 566666776555444

>PRK09602 translation-associated GTPase; Reviewed

Probab=86.79  E-value=1.7  Score=36.57  Aligned_cols=32  Identities=28%  Similarity=0.383  Sum_probs=24.5

Q ss_pred             CeeCCC----CchhhhhHhhh---hcCCCEEEEEEeCCC
Q psy12099          1 MFDVGG----QRDERRKWIQC---FNDVTAIIFVTACSS   32 (174)
Q Consensus         1 iwD~~G----q~~~r~~w~~y---~~~~~~ii~v~d~s~   32 (174)
                      +|||+|    +...+.+-..+   +++++++++|+|++.
T Consensus        76 i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~  114 (396)
T PRK09602         76 LIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASG  114 (396)
T ss_pred             EEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence            589999    44455554455   889999999999974

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=86.20  E-value=3.3  Score=29.21  Aligned_cols=62  Identities=16%  Similarity=0.297  Sum_probs=40.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~   77 (174)
                      |.|+++.-.  ......+..+|.++++++.           +..++......++.+.+..  ...++.++.|+.+-.
T Consensus        49 IiD~p~~~~--~~~~~~l~~aD~vviv~~~-----------~~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~  110 (139)
T cd02038          49 IIDTGAGIS--DNVLDFFLAADEVIVVTTP-----------EPTSITDAYALIKKLAKQL--RVLNFRVVVNRAESP  110 (139)
T ss_pred             EEECCCCCC--HHHHHHHHhCCeEEEEcCC-----------ChhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence            468876432  2234567889999999987           4555665555555553321  355788999999754

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=85.59  E-value=4.2  Score=35.13  Aligned_cols=70  Identities=13%  Similarity=0.173  Sum_probs=43.9

Q ss_pred             CcEEEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeec
Q psy12099         65 ISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFT  144 (174)
Q Consensus        65 ~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~t  144 (174)
                      +||+||.+|+|.......  ...       |.              ++.++-..+|++.-..         .+..-.++|
T Consensus       197 ipi~VV~tksD~~~~Lek--~~~-------~~--------------~e~~DfIqq~LR~~cL---------~yGAsL~yt  244 (472)
T PF05783_consen  197 IPIVVVCTKSDKIETLEK--ETD-------WK--------------EEHFDFIQQYLRTFCL---------KYGASLIYT  244 (472)
T ss_pred             cceEEEEecccHHHHHhh--hcc-------cc--------------hhhHHHHHHHHHHHHH---------hcCCeEEEe
Confidence            699999999998764322  101       11              1233444455443221         233456679


Q ss_pred             ccccchhHHHHHHHHHHHHHHh
Q psy12099        145 CAVDTENIRRVFNDCRDIIQRM  166 (174)
Q Consensus       145 sA~d~~~i~~~f~~~~~~i~~~  166 (174)
                      |++...|++-++..|...+...
T Consensus       245 s~~~~~n~~~L~~yi~h~l~~~  266 (472)
T PF05783_consen  245 SVKEEKNLDLLYKYILHRLYGF  266 (472)
T ss_pred             eccccccHHHHHHHHHHHhccC
Confidence            9999999999999887776544

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG0461|consensus

Probab=84.76  E-value=9.3  Score=31.94  Aligned_cols=27  Identities=19%  Similarity=0.001  Sum_probs=19.0

Q ss_pred             eeeeecccccc----hhHHHHHHHHHHHHHH
Q psy12099        139 CYPHFTCAVDT----ENIRRVFNDCRDIIQR  165 (174)
Q Consensus       139 ~~~~~tsA~d~----~~i~~~f~~~~~~i~~  165 (174)
                      ..+.+.||.+|    +.|.++-+.+...|..
T Consensus       164 ~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  164 SPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             CceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence            56678899999    6666666666666653

>COG1161 Predicted GTPases [General function prediction only]

Probab=83.77  E-value=3.6  Score=33.61  Aligned_cols=57  Identities=19%  Similarity=0.282  Sum_probs=35.3

Q ss_pred             CchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          7 QRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         7 q~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +.++.+.-......++.|+-|+|.          -++.+...  ..+..++.     +.|.++++||.||....
T Consensus        21 ~~k~~~~~~~~~~~~d~vvevvDa----------r~P~~s~~--~~l~~~v~-----~k~~i~vlNK~DL~~~~   77 (322)
T COG1161          21 MKKAKRQLKEVLKSVDVVVEVVDA----------RDPLGTRN--PELERIVK-----EKPKLLVLNKADLAPKE   77 (322)
T ss_pred             hHHHHHHHHHhcccCCEEEEEEec----------cccccccC--ccHHHHHc-----cCCcEEEEehhhcCCHH
Confidence            344445555677899999999999          33332211  11233332     33449999999998654

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=82.93  E-value=16  Score=27.85  Aligned_cols=63  Identities=11%  Similarity=0.049  Sum_probs=37.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~   77 (174)
                      |.|+++.-  .......+..++.+|+++..           +..++......+..+++. ...+.++.++.|+.|..
T Consensus       119 iiD~pp~~--~~~~~~~l~~ad~vii~~~~-----------~~~s~~~~~~~~~~l~~~-~~~~~~~~iv~n~~~~~  181 (246)
T TIGR03371       119 LIDVPRGP--SPITRQALAAADLVLVVVNA-----------DAACYATLHQQALALFAG-SGPRIGPHFLINQFDPA  181 (246)
T ss_pred             EEECCCCc--hHHHHHHHHhCCeEEEEeCC-----------CHHHHHHHHHHHHHHhhc-ccccccceEEeeccCcc
Confidence            46777742  23344556788888888876           344444444344444442 12345678899999854

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=81.95  E-value=4  Score=33.19  Aligned_cols=53  Identities=17%  Similarity=0.134  Sum_probs=27.4

Q ss_pred             EEEEeCCchhhHHHhcc----ccchh-hhhh--ccCCCCCCCCCCCCCCCChHHHHHHHH
Q psy12099         68 ILFLNKQDLLAEKVKAG----KSRLE-DYFQ--EFTRYQTPLDATPDPGEDPIVIRAKYF  120 (174)
Q Consensus        68 ilv~NK~Dl~~~~~~~~----~~~l~-~~~~--~~~~~~~~~~a~~~~g~~~~~~~a~~~  120 (174)
                      +++.||.|+........    ...+. ++..  .+..+..-++|.+|+|.++..+...++
T Consensus       193 i~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h  252 (323)
T COG1703         193 IIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDH  252 (323)
T ss_pred             eeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHH
Confidence            67889999766532200    01111 1112  222234556677777766666665554

>PHA02518 ParA-like protein; Provisional

Probab=80.38  E-value=21  Score=26.46  Aligned_cols=28  Identities=7%  Similarity=-0.039  Sum_probs=21.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeC
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTAC   30 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~   30 (174)
                      |+|++|..  .......+..+|.+|.++..
T Consensus        81 iiD~p~~~--~~~~~~~l~~aD~viip~~p  108 (211)
T PHA02518         81 VVDGAPQD--SELARAALRIADMVLIPVQP  108 (211)
T ss_pred             EEeCCCCc--cHHHHHHHHHCCEEEEEeCC
Confidence            57998864  34455667799999999877

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
1cs4_C	394	Complex Of Gs-Alpha With The Catalytic Domains Of M		7e-91
3sn6_A	380	Crystal Structure Of The Beta2 Adrenergic Receptor-		8e-91
1azs_C	402	Complex Of Gs-Alpha With The Catalytic Domains Of M		9e-91
1cjk_C	402	Complex Of Gs-Alpha With The Catalytic Domains Of M		9e-91
1cul_C	380	Complex Of Gs-Alpha With The Catalytic Domains Of M		9e-91
3ah8_A	355	Structure Of Heterotrimeric G Protein Galpha-Q Beta		4e-33
3ohm_A	327	Crystal Structure Of Activated G Alpha Q Bound To I		5e-33
2bcj_Q	353	Crystal Structure Of G Protein-coupled Receptor Kin		5e-33
4ekc_A	347	Structure Of Human Regulator Of G Protein Signaling		7e-33
4gnk_A	353	Crystal Structure Of Galphaq In Complex With Full-l		8e-33
1tnd_A	324	The 2.2 Angstroms Crystal Structure Of Transducin-A		2e-32
3v00_C	356	Studies Of A Constitutively Active G-Alpha Subunit		4e-32
1fqj_A	325	Crystal Structure Of The Heterotrimeric Complex Of		6e-32
3c7k_A	333	Molecular Architecture Of Galphao And The Structura		8e-32
4g5o_A	330	Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length		8e-32
2ode_A	350	Crystal Structure Of The Heterodimeric Complex Of H		9e-32
4g5r_A	330	Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330		1e-31
2ihb_A	323	Crystal Structure Of The Heterodimeric Complex Of H		1e-31
4g5q_A	330	Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330		1e-31
3onw_A	328	Structure Of A G-Alpha-I1 Mutant With Enhanced Affi		2e-31
1gp2_A	353	G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 Wi		2e-31
1y3a_A	329	Structure Of G-Alpha-I1 Bound To A Gdp-Selective Pe		2e-31
1as0_A	353	Gtp-Gamma-S Bound G42v Gia1 Length = 353		2e-31
2xns_A	327	Crystal Structure Of Human G Alpha I1 Bound To A De		2e-31
3qi2_A	328	A Galpha P-Loop Mutation Prevents Transition To The		2e-31
1svk_A	353	Structure Of The K180p Mutant Of Gi Alpha Subunit B		2e-31
1kjy_A	325	Crystal Structure Of Human G[alpha]i1 Bound To The		2e-31
2ik8_A	324	Crystal Structure Of The Heterodimeric Complex Of H		2e-31
3qe0_A	325	A Galpha-I1 P-Loop Mutation Prevents Transition To		2e-31
2gtp_A	323	Crystal Structure Of The Heterodimeric Complex Of H		2e-31
2zjy_A	356	Structure Of The K349p Mutant Of Gi Alpha 1 Subunit		3e-31
3ffb_A	360	Crystal Structure Of A Fast Activating G Protein Mu		5e-31
2g83_A	313	Structure Of Activated G-alpha-i1 Bound To A Nucleo		5e-31
3d7m_A	354	Crystal Structure Of The G Protein Fast-Exchange Do		5e-31
1gg2_A	353	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		8e-31
3ums_A	354	Crystal Structure Of The G202a Mutant Of Human G-Al		9e-31
1gil_A	353	Structure Of Active Conformations Of Gia1 And The M		1e-30
1bh2_A	315	A326s Mutant Of An Inhibitory Alpha Subunit Length		1e-30
1got_A	350	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		3e-30
1shz_A	340	Crystal Structure Of The P115rhogef Rgrgs Domain In		6e-30
3cx7_A	338	Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co		3e-29
1zcb_A	362	Crystal Structure Of G Alpha 13 In Complex With Gdp		3e-29
3umr_A	354	Crystal Structure Of The G202d Mutant Of Human G-Al		4e-29
3cx6_A	338	Crystal Structure Of Pdzrhogef Rgrgs Domain In A Co		2e-28
1zca_A	359	Crystal Structure Of G Alpha 12 In Complex With Gdp		7e-27
4fid_A	340	Crystal Structure Of A Heterotrimeric G-Protein Sub		2e-20
2xtz_A	354	Crystal Structure Of The G Alpha Protein Atgpa1 Fro		2e-16
2nzz_A	37	Nmr Structure Analysis Of The Penetratin Conjugated		2e-05
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		8e-04

>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And Mg Length = 394

Iteration: 1
 Score =  328 bits (842), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 154/174 (88%), Positives = 162/174 (93%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct: 221 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 281 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 340
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 341 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394

>pdb|3SN6|A Chain A, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 380

Iteration: 1
 Score =  328 bits (842), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 154/174 (88%), Positives = 162/174 (93%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct: 207 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 266
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 267 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 326
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 327 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 380

>pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase Length = 402

Iteration: 1
 Score =  328 bits (841), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 154/174 (88%), Positives = 162/174 (93%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct: 221 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 281 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 340
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 341 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394

>pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With Adenosine 5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn Length = 402

Iteration: 1
 Score =  328 bits (841), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 154/174 (88%), Positives = 162/174 (93%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct: 221 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 281 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 340
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 341 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394

>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg Length = 380

Iteration: 1
 Score =  328 bits (841), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 154/174 (88%), Positives = 162/174 (93%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct: 207 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 266
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 267 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 326
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 327 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 380

>pdb|3AH8|A Chain A, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma In Complex With An Inhibitor Ym-254890 Length = 355

Iteration: 1
 Score =  137 bits (344), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 78/174 (44%), Positives = 102/174 (58%), Gaps = 17/174 (9%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           M DVGGQR ERRKWI CF +VT+I+F+ A S Y+ VL E   +NR+ ES  LF++I    
Sbjct: 199 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 258
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W +  SVILFLNK+DLL EK+    S L DYF E+   Q    A            A+ F
Sbjct: 259 WFQNSSVILFLNKKDLLEEKIMY--SHLVDYFPEYDGPQRDAQA------------AREF 304
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           I   F+ ++    D     Y HFTCA DTENIR VF   +D I +++L++Y L+
Sbjct: 305 ILKMFVDLNP---DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 355

>pdb|3OHM|A Chain A, Crystal Structure Of Activated G Alpha Q Bound To Its Effector Phospholipase C Beta 3 Length = 327

Iteration: 1
 Score =  136 bits (343), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 78/174 (44%), Positives = 102/174 (58%), Gaps = 17/174 (9%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           M DVGGQR ERRKWI CF +VT+I+F+ A S Y+ VL E   +NR+ ES  LF++I    
Sbjct: 171 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W +  SVILFLNK+DLL EK+    S L DYF E+   Q    A            A+ F
Sbjct: 231 WFQNSSVILFLNKKDLLEEKIMY--SHLVDYFPEYDGPQRDAQA------------AREF 276
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           I   F+ ++    D     Y HFTCA DTENIR VF   +D I +++L++Y L+
Sbjct: 277 ILKMFVDLNP---DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 327

>pdb|2BCJ|Q Chain Q, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 353

Iteration: 1
 Score =  136 bits (343), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 78/174 (44%), Positives = 102/174 (58%), Gaps = 17/174 (9%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           M DVGGQR ERRKWI CF +VT+I+F+ A S Y+ VL E   +NR+ ES  LF++I    
Sbjct: 197 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 256
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W +  SVILFLNK+DLL EK+    S L DYF E+   Q    A            A+ F
Sbjct: 257 WFQNSSVILFLNKKDLLEEKIMY--SHLVDYFPEYDGPQRDAQA------------AREF 302
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           I   F+ ++    D     Y HFTCA DTENIR VF   +D I +++L++Y L+
Sbjct: 303 ILKMFVDLNP---DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 353

>pdb|4EKC|A Chain A, Structure Of Human Regulator Of G Protein Signaling 2 (rgs2) In Complex With Murine Galpha-q(r183c) Length = 347

Iteration: 1
 Score =  136 bits (342), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 78/174 (44%), Positives = 102/174 (58%), Gaps = 17/174 (9%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           M DVGGQR ERRKWI CF +VT+I+F+ A S Y+ VL E   +NR+ ES  LF++I    
Sbjct: 191 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 250
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W +  SVILFLNK+DLL EK+    S L DYF E+   Q    A            A+ F
Sbjct: 251 WFQNSSVILFLNKKDLLEEKIMY--SHLVDYFPEYDGPQRDAQA------------AREF 296
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           I   F+ ++    D     Y HFTCA DTENIR VF   +D I +++L++Y L+
Sbjct: 297 ILKMFVDLNP---DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 347

>pdb|4GNK|A Chain A, Crystal Structure Of Galphaq In Complex With Full-length Human Plcbeta3 Length = 353

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 78/174 (44%), Positives = 102/174 (58%), Gaps = 17/174 (9%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           M DVGGQR ERRKWI CF +VT+I+F+ A S Y+ VL E   +NR+ ES  LF++I    
Sbjct: 197 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 256
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W +  SVILFLNK+DLL EK+    S L DYF E+   Q    A            A+ F
Sbjct: 257 WFQNSSVILFLNKKDLLEEKIMY--SHLVDYFPEYDGPQRDAQA------------AREF 302
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           I   F+ ++    D     Y HFTCA DTENIR VF   +D I +++L++Y L+
Sbjct: 303 ILKMFVDLNP---DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 353

>pdb|1TND|A Chain A, The 2.2 Angstroms Crystal Structure Of Transducin-Alpha Complexed With Gtp Gamma S Length = 324

Iteration: 1
 Score =  134 bits (338), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 105/169 (62%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VT IIF+ A S+Y+MVL ED   NR+ ESL LF SI N+R
Sbjct: 168 MFDVGGQRSERKKWIHCFEGVTCIIFIAALSAYDMVLVEDDEVNRMHESLHLFNSICNHR 227
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           +  T S++LFLNK+D+ +EK+K  K+ L   F ++          P+  ED     A  +
Sbjct: 228 YFATTSIVLFLNKKDVFSEKIK--KAHLSICFPDYN--------GPNTYED-----AGNY 272
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +FL ++    D K   Y H TCA DT+N++ VF+   DII + +L+
Sbjct: 273 IKVQFLELNMRR-DVKE-IYSHMTCATDTQNVKFVFDAVTDIIIKENLK 319

>pdb|3V00|C Chain C, Studies Of A Constitutively Active G-Alpha Subunit Provide Insights Into The Mechanism Of G Protein Activation. Length = 356

Iteration: 1
 Score =  133 bits (335), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 200 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMHLFNSICNNK 259
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 260 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAGN-------------Y 304
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +FL ++    D K   Y H TCA DT+N++ VF+   DII + +L+
Sbjct: 305 IKVQFLELNMRR-DVKE-IYSHMTCATDTQNVKFVFDAVTDIIIKENLK 351

>pdb|1FQJ|A Chain A, Crystal Structure Of The Heterotrimeric Complex Of The Rgs Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)- (GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)] Length = 325

Iteration: 1
 Score =  133 bits (334), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 76/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 169 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 228
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 229 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAGN-------------Y 273
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +FL ++    D K   Y H TCA DT+N++ VF+   DII + +L+
Sbjct: 274 IKVQFLELNMRR-DVKE-IYSHMTCATDTQNVKFVFDAVTDIIIKENLK 320

>pdb|3C7K|A Chain A, Molecular Architecture Of Galphao And The Structural Basis For Rgs16-Mediated Deactivation Length = 333

Iteration: 1
 Score =  132 bits (333), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 80/169 (47%), Positives = 98/169 (57%), Gaps = 18/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           +FDVGGQR ER+KWI CF DVTAIIF  A S Y+ VL ED T NR+ ESL LF SI NN+
Sbjct: 178 LFDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRMHESLMLFDSICNNK 237
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           +    S+ILFLNK+DL  EK+K  KS L   F E+    T  DA               +
Sbjct: 238 FFIDTSIILFLNKKDLFGEKIK--KSPLTICFPEYPGSNTYEDAAA-------------Y 282
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +F      S + + YC  H TCA DT NI+ VF+   DII   +LR
Sbjct: 283 IQTQF-ESKNRSPNKEIYC--HMTCATDTNNIQVVFDAVTDIIIANNLR 328

>pdb|4G5O|A Chain A, Structure Of Lgn Gl4GALPHAI3(Q147L) COMPLEX Length = 330

Iteration: 1
 Score =  132 bits (333), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 102/170 (60%), Gaps = 17/170 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 174 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 233
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  +S L   + E+T   T  +A               +
Sbjct: 234 WFTETSIILFLNKKDLFEEKIK--RSPLTICYPEYTGSNTYEEAAA-------------Y 278
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQ 170
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L++
Sbjct: 279 IQCQFEDLNRRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKE 326

>pdb|2ODE|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs8 And Activated Gi Alpha 3 Length = 350

Iteration: 1
 Score =  132 bits (333), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 102/170 (60%), Gaps = 17/170 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 197 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  +S L   + E+T   T  +A               +
Sbjct: 257 WFTETSIILFLNKKDLFEEKIK--RSPLTICYPEYTGSNTYEEAAA-------------Y 301
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQ 170
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L++
Sbjct: 302 IQCQFEDLNRRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKE 349

>pdb|4G5R|A Chain A, Structure Of Lgn Gl4GALPHAI3 COMPLEX Length = 330

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 102/170 (60%), Gaps = 17/170 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 174 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 233
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  +S L   + E+T   T  +A               +
Sbjct: 234 WFTETSIILFLNKKDLFEEKIK--RSPLTICYPEYTGSNTYEEAAA-------------Y 278
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQ 170
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L++
Sbjct: 279 IQCQFEDLNRRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKE 326

>pdb|2IHB|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs10 And Activated Gi Alpha 3 Length = 323

Iteration: 1
 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 102/170 (60%), Gaps = 17/170 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 167 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 226
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  +S L   + E+T   T  +A               +
Sbjct: 227 WFTETSIILFLNKKDLFEEKIK--RSPLTICYPEYTGSNTYEEAAA-------------Y 271
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQ 170
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L++
Sbjct: 272 IQCQFEDLNRRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLKE 319

>pdb|4G5Q|A Chain A, Structure Of Lgn Gl4GALPHAI1 COMPLEX Length = 330

Iteration: 1
 Score =  132 bits (331), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 174 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 233
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 234 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 278
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L+
Sbjct: 279 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 325

>pdb|3ONW|A Chain A, Structure Of A G-Alpha-I1 Mutant With Enhanced Affinity For The Rgs14 Goloco Motif. Length = 328

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 172 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 231
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 232 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 276
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L+
Sbjct: 277 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 323

>pdb|1GP2|A Chain A, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 197 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 257 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 301
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L+
Sbjct: 302 IQCQFEDLNKRK-DTKEI-YTHFTCATDTKNVQFVFDAVTDVIIKNNLK 348

>pdb|1Y3A|A Chain A, Structure Of G-Alpha-I1 Bound To A Gdp-Selective Peptide Provides Insight Into Guanine Nucleotide Exchange Length = 329

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 173 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 232
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 233 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 277
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L+
Sbjct: 278 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 324

>pdb|1AS0|A Chain A, Gtp-Gamma-S Bound G42v Gia1 Length = 353

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 197 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 257 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 301
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L+
Sbjct: 302 IQCQFEDLNKRK-DTKEI-YTHFTCATDTKNVQFVFDAVTDVIIKNNLK 348

>pdb|2XNS|A Chain A, Crystal Structure Of Human G Alpha I1 Bound To A Designed Helical Peptide Derived From The Goloco Motif Of Rgs14 Length = 327

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 171 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 230
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 231 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 275
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L+
Sbjct: 276 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 322

>pdb|3QI2|A Chain A, A Galpha P-Loop Mutation Prevents Transition To The Activated State: G42r Bound To Rgs14 Goloco Length = 328

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 172 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 231
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 232 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 276
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L+
Sbjct: 277 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 323

>pdb|1SVK|A Chain A, Structure Of The K180p Mutant Of Gi Alpha Subunit Bound To Alf4 And Gdp Length = 353

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 197 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 257 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 301
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L+
Sbjct: 302 IQCQFEDLNKRK-DTKEI-YTHFTCATDTKNVQFVFDAVTDVIIKNNLK 348

>pdb|1KJY|A Chain A, Crystal Structure Of Human G[alpha]i1 Bound To The Goloco Motif Of Rgs14 Length = 325

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 169 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 228
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 229 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 273
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L+
Sbjct: 274 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 320

>pdb|2IK8|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs16 And Activated Gi Alpha 1 Length = 324

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 168 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 227
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 228 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 272
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L+
Sbjct: 273 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 319

>pdb|3QE0|A Chain A, A Galpha-I1 P-Loop Mutation Prevents Transition To The Activated State Length = 325

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 169 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 228
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 229 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 273
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L+
Sbjct: 274 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 320

>pdb|2GTP|A Chain A, Crystal Structure Of The Heterodimeric Complex Of Human Rgs1 And Activated Gi Alpha 1 Length = 323

Iteration: 1
 Score =  131 bits (329), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 100/169 (59%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 167 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 226
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 227 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 271
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L+
Sbjct: 272 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 318

>pdb|2ZJY|A Chain A, Structure Of The K349p Mutant Of Gi Alpha 1 Subunit Bound To Alf4 And Gdp Length = 356

Iteration: 1
 Score =  130 bits (327), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 99/168 (58%), Gaps = 17/168 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 200 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 259
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 260 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 304
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHL 168
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L
Sbjct: 305 IQCQFEDLNKRK-DTKEI-YTHFTCATDTKNVQFVFDAVTDVIIKNNL 350

>pdb|2G83|A Chain A, Structure Of Activated G-alpha-i1 Bound To A Nucleotide- State-selective Peptide: Minimal Determinants For Recognizing The Active Form Of A G Protein Alpha Subunit Length = 313

Iteration: 1
 Score =  130 bits (326), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 74/163 (45%), Positives = 96/163 (58%), Gaps = 17/163 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 166 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 225
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 226 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 270
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDII 163
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I
Sbjct: 271 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVI 311

>pdb|3D7M|A Chain A, Crystal Structure Of The G Protein Fast-Exchange Double Mutant I56cQ333C Length = 354

Iteration: 1
 Score =  130 bits (326), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 75/169 (44%), Positives = 99/169 (58%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 198 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 257
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 258 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 302
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +F  ++    D K   Y HFTCA DT+N+  VF+   D+I + +L+
Sbjct: 303 IQCQFEDLNKRK-DTKEI-YTHFTCATDTKNVCFVFDAVTDVIIKNNLK 349

>pdb|1GG2|A Chain A, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 353

Iteration: 1
 Score =  129 bits (324), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 99/169 (58%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVG QR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 197 MFDVGAQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 257 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 301
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L+
Sbjct: 302 IQCQFEDLNKRK-DTKEI-YTHFTCATDTKNVQFVFDAVTDVIIKNNLK 348

>pdb|3UMS|A Chain A, Crystal Structure Of The G202a Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score =  129 bits (324), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 99/169 (58%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDV GQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 198 MFDVAGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 257
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 258 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 302
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L+
Sbjct: 303 IQCQFEDLNKRK-DTKEI-YTHFTCATDTKNVQFVFDAVTDVIIKNNLK 349

>pdb|1GIL|A Chain A, Structure Of Active Conformations Of Gia1 And The Mechanism Of Gtp Hydrolysis Length = 353

Iteration: 1
 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 99/169 (58%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGG R ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 197 MFDVGGLRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 257 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 301
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L+
Sbjct: 302 IQCQFEDLNKRK-DTKEI-YTHFTCATDTKNVQFVFDAVTDVIIKNNLK 348

>pdb|1BH2|A Chain A, A326s Mutant Of An Inhibitory Alpha Subunit Length = 315

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 96/163 (58%), Gaps = 17/163 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 167 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 226
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 227 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 271
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDII 163
           I+ +F  ++    D K   Y HFTC+ DT+N++ VF+   D+I
Sbjct: 272 IQCQFEDLNKRK-DTKE-IYTHFTCSTDTKNVQFVFDAVTDVI 312

>pdb|1GOT|A Chain A, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 350

Iteration: 1
 Score =  127 bits (319), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 75/168 (44%), Positives = 97/168 (57%), Gaps = 17/168 (10%)
Query: 2   FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW 61
           FDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR  ES  LF SI NN+W
Sbjct: 195 FDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEXNRXHESXKLFDSICNNKW 254
Query: 62  LRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFI 121
               S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +I
Sbjct: 255 FTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAGN-------------YI 299
Query: 122 RDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           + +FL ++    D K   Y H TCA DT+N++ VF+   DII + +L+
Sbjct: 300 KVQFLELNXRR-DVKE-IYSHXTCATDTQNVKFVFDAVTDIIIKENLK 345

>pdb|1SHZ|A Chain A, Crystal Structure Of The P115rhogef Rgrgs Domain In A Complex With Galpha(13):galpha(i1) Chimera Length = 340

Iteration: 1
 Score =  126 bits (317), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 74/169 (43%), Positives = 99/169 (58%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KW +CF  VTAIIF  A S Y+ VL ED   NR+ ES+ LF SI NN+
Sbjct: 184 MFDVGGQRSERKKWFECFEGVTAIIFCVALSDYDQVLMEDRQTNRMHESMKLFDSICNNK 243
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 244 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 288
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L+
Sbjct: 289 IQCQFEDLNKRK-DTKE-IYTHFTCATDTKNVQFVFDAVTDVIIKNNLK 335

>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp-Alf4 Length = 338

Iteration: 1
 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/174 (41%), Positives = 102/174 (58%), Gaps = 18/174 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           M DVGGQR ER++W +CF+ VT+I+F+ + S ++ VL ED   NRL ESL++F++I NNR
Sbjct: 181 MVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 240
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIR-AKY 119
               +S+ILFLNK DLL EKV+     ++DYF EF               DP  +R  + 
Sbjct: 241 VFSNVSIILFLNKTDLLEEKVQV--VSIKDYFLEFE-------------GDPHCLRDVQK 285
Query: 120 FIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 173
           F+ + F          +   Y HFT A++TENIR VF D +D I   +L+Q  L
Sbjct: 286 FLVECFR--GKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLML 337

>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp Length = 362

Iteration: 1
 Score =  124 bits (310), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/174 (41%), Positives = 102/174 (58%), Gaps = 18/174 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           M DVGGQR ER++W +CF+ VT+I+F+ + S ++ VL ED   NRL ESL++F++I NNR
Sbjct: 205 MVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 264
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIR-AKY 119
               +S+ILFLNK DLL EKV+     ++DYF EF               DP  +R  + 
Sbjct: 265 VFSNVSIILFLNKTDLLEEKVQV--VSIKDYFLEFE-------------GDPHCLRDVQK 309
Query: 120 FIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 173
           F+ + F          +   Y HFT A++TENIR VF D +D I   +L+Q  L
Sbjct: 310 FLVECFR--GKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLML 361

>pdb|3UMR|A Chain A, Crystal Structure Of The G202d Mutant Of Human G-Alpha-I1 Length = 354

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 73/169 (43%), Positives = 98/169 (57%), Gaps = 17/169 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDV GQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 198 MFDVDGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 257
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
                S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 258 CFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEAAA-------------Y 302
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I+ +F  ++    D K   Y HFTCA DT+N++ VF+   D+I + +L+
Sbjct: 303 IQCQFEDLNKRK-DTKEI-YTHFTCATDTKNVQFVFDAVTDVIIKNNLK 349

>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex With Galpha-13 Bound To Gdp Length = 338

Iteration: 1
 Score =  121 bits (303), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 101/174 (58%), Gaps = 18/174 (10%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           M DVGG R ER++W +CF+ VT+I+F+ + S ++ VL ED   NRL ESL++F++I NNR
Sbjct: 181 MVDVGGLRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 240
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIR-AKY 119
               +S+ILFLNK DLL EKV+     ++DYF EF               DP  +R  + 
Sbjct: 241 VFSNVSIILFLNKTDLLEEKVQV--VSIKDYFLEFE-------------GDPHCLRDVQK 285
Query: 120 FIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 173
           F+ + F          +   Y HFT A++TENIR VF D +D I   +L+Q  L
Sbjct: 286 FLVECFR--GKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLML 337

>pdb|1ZCA|A Chain A, Crystal Structure Of G Alpha 12 In Complex With Gdp, Mg2+ And Alf4- Length = 359

Iteration: 1
 Score =  116 bits (290), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 99/173 (57%), Gaps = 17/173 (9%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           M DVGGQR +R+KW QCF+ +T+I+F+ + S Y+ VL ED   NRL ES+++F++I NN+
Sbjct: 203 MVDVGGQRSQRQKWFQCFDGITSILFMVSSSEYDQVLMEDRRTNRLVESMNIFETIVNNK 262
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
               +S+ILFLNK DLL EKVK+    ++ +F +F          P   ED      + F
Sbjct: 263 LFFNVSIILFLNKMDLLVEKVKS--VSIKKHFPDFK-------GDPHRLEDVQRYLVQCF 313
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 173
            R    R            + HFT A+DTENIR VF+  +D I + +L+   L
Sbjct: 314 DRKRRNRSKP--------LFHHFTTAIDTENIRFVFHAVKDTILQENLKDIML 358

>pdb|4FID|A Chain A, Crystal Structure Of A Heterotrimeric G-Protein Subunit From Entamoeba Histolytica, Ehg-Alpha-1 Length = 340

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 86/178 (48%), Gaps = 27/178 (15%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           + DVGGQR ER+ W+  F+DV   IFVT+ + Y+  L ED   +RL ES+ +FK I  N 
Sbjct: 165 LIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDXKLYEDGNTSRLTESIAVFKDIXTNE 224
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           +L+    ++FLNK DL  EK+   K  L   F E+T            G D  V  A+Y 
Sbjct: 225 FLKGAVKLIFLNKXDLFEEKLT--KVPLNTIFPEYT------------GGDNAVXGAQYI 270
Query: 121 -------IRDEFLRISTASGDG------KHYCYPHFTCAVDTENIRRVFNDCRDIIQR 165
                  ++ E   IS A G            Y + T A D  NI+RVF    D+I +
Sbjct: 271 QQLFTGKLQTEEXNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFXLAVDVIXK 328

>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From Arabidopsis Thaliana Length = 354

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 6/174 (3%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           +FDVGGQR+ERRKWI  F  VTA+IF  A S Y+  L ED  +NR+ E+ +LF  +    
Sbjct: 187 LFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 246
Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
                S +LFLNK D+  +KV      + ++F+++     P+ +     E       K F
Sbjct: 247 CFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDY----QPVSSGKQEIEHAYEFVKKKF 302
Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
             +E    +TA          + T A+D + +++ F    + ++R +L +  LL
Sbjct: 303 --EELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLLEAGLL 354

>pdb|2NZZ|A Chain A, Nmr Structure Analysis Of The Penetratin Conjugated Gas (374-394) Peptide Length = 37

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/22 (90%), Positives = 21/22 (95%)
Query: 153 RRVFNDCRDIIQRMHLRQYELL 174
           +RVFND RDIIQRMHLRQYELL
Sbjct: 16  KRVFNDARDIIQRMHLRQYELL 37

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           ++DVGGQ   R  W   +     +IFV  C+           ++R+ E+      I N+R
Sbjct: 370 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCAD----------RDRIDEARQELHRIINDR 419
Query: 61  WLRTISVILFLNKQDL 76
            +R   +++F NKQDL
Sbjct: 420 EMRDAIILIFANKQDL 435

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	1e-73
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	5e-66
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	2e-61
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	4e-58
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	1e-55
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	3e-09
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-08
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	5e-08
2nzz_A	37	Penetratin conjugated GAS (374-394) peptide; confo	7e-08
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	8e-08
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	8e-08
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	1e-07
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-07
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-07
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	2e-07
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	2e-07
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	3e-07
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	4e-07
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	5e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-07
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	3e-06
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	4e-06
3llu_A	196	RAS-related GTP-binding protein C; structural geno	5e-05
2ged_A	193	SR-beta, signal recognition particle receptor beta	7e-05
1nrj_B	218	SR-beta, signal recognition particle receptor beta	1e-04

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402

 Score =  225 bits (575), Expect = 1e-73
 Identities = 154/174 (88%), Positives = 162/174 (93%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct: 221 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 280

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 281 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 340

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL
Sbjct: 341 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 394

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354

 Score =  204 bits (521), Expect = 5e-66
 Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 12/177 (6%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           +FDVGGQR+ERRKWI  F  VTA+IF  A S Y+  L ED  +NR+ E+ +LF  +    
Sbjct: 187 LFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP 246

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
                S +LFLNK D+  +KV      + ++F+++          P       +  A  F
Sbjct: 247 CFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDY---------QPVSSGKQEIEHAYEF 297

Query: 121 IRDEFLRI---STASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           ++ +F  +   +TA          + T A+D + +++ F    + ++R +L +  LL
Sbjct: 298 VKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRRRNLLEAGLL 354

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327

 Score =  192 bits (489), Expect = 2e-61
 Identities = 78/174 (44%), Positives = 102/174 (58%), Gaps = 17/174 (9%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           M DVGGQR ERRKWI CF +VT+I+F+ A S Y+ VL E   +NR+ ES  LF++I    
Sbjct: 171 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W +  SVILFLNK+DLL EK+    S L DYF E+   Q    A            A+ F
Sbjct: 231 WFQNSSVILFLNKKDLLEEKIM--YSHLVDYFPEYDGPQRDAQA------------AREF 276

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           I   F+ ++    D     Y HFTCA DTENIR VF   +D I +++L++Y L+
Sbjct: 277 ILKMFVDLNP---DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV 327

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362

 Score =  184 bits (469), Expect = 4e-58
 Identities = 71/173 (41%), Positives = 101/173 (58%), Gaps = 16/173 (9%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           M DVGGQR ER++W +CF+ VT+I+F+ + S ++ VL ED   NRL ESL++F++I NNR
Sbjct: 205 MVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 264

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
               +S+ILFLNK DLL EKV+     ++DYF EF             G+   +   + F
Sbjct: 265 VFSNVSIILFLNKTDLLEEKVQ--VVSIKDYFLEFE------------GDPHCLRDVQKF 310

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYEL 173
           + + F          +   Y HFT A++TENIR VF D +D I   +L+Q  L
Sbjct: 311 LVECFR--GKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLKQLML 361

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353

 Score =  177 bits (451), Expect = 1e-55
 Identities = 73/174 (41%), Positives = 97/174 (55%), Gaps = 17/174 (9%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 197 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 256

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   +             P+         A  +
Sbjct: 257 WFTDTSIILFLNKKDLFEEKIK--KSPLTICY-------------PEYAGSNTYEEAAAY 301

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQYELL 174
           I+ +F  ++          Y HFTCA DT+N++ VF+   D+I + +L+   L 
Sbjct: 302 IQCQFEDLNKR--KDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNLKDCGLF 353

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 10/76 (13%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
            FD+GG    RR W      +  I+F+  C+        D    RL ES +   S+  + 
Sbjct: 73  TFDLGGHIQARRVWKNYLPAINGIVFLVDCA--------DH--ERLLESKEELDSLMTDE 122

Query: 61  WLRTISVILFLNKQDL 76
            +  + +++  NK D 
Sbjct: 123 TIANVPILILGNKIDR 138

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 10/76 (13%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
            FD+GG    RR W   F +V  I+F+   +        D    R  E+     +++N  
Sbjct: 71  TFDLGGHIQARRLWKDYFPEVNGIVFLVDAA--------D--PERFDEARVELDALFNIA 120

Query: 61  WLRTISVILFLNKQDL 76
            L+ +  ++  NK D 
Sbjct: 121 ELKDVPFVILGNKIDA 136

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 49.5 bits (119), Expect = 5e-08
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 10/76 (13%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           ++DVGGQ+  R  W   F     +I+V   +           + R+++     +S+    
Sbjct: 66  IWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------RQRMQDCQRELQSLLVEE 115

Query: 61  WLRTISVILFLNKQDL 76
            L   ++++F NKQDL
Sbjct: 116 RLAGATLLIFANKQDL 131

>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A Length = 37

 Score = 45.8 bits (108), Expect = 7e-08
 Identities = 20/22 (90%), Positives = 21/22 (95%)

Query: 153 RRVFNDCRDIIQRMHLRQYELL 174
           +RVFND RDIIQRMHLRQYELL
Sbjct: 16  KRVFNDARDIIQRMHLRQYELL 37

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 48.8 bits (117), Expect = 8e-08
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 10/76 (13%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           M+D+GGQ   R  W   + +   +I V   +           + R+  + +    +  + 
Sbjct: 69  MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHE 118

Query: 61  WLRTISVILFLNKQDL 76
            LR   +++F NKQD+
Sbjct: 119 DLRKAGLLIFANKQDV 134

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 48.8 bits (117), Expect = 8e-08
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           ++D+GGQ   R  W   + D  A+IFV   +           ++R+  +      +    
Sbjct: 66  VWDLGGQTSIRPYWRCYYADTAAVIFVVDSTD----------KDRMSTASKELHLMLQEE 115

Query: 61  WLRTISVILFLNKQDL 76
            L+  ++++F NKQD 
Sbjct: 116 ELQDAALLVFANKQDQ 131

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 10/76 (13%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           M+D+GGQ   R  W   + +   +I V   +           + R+  + +    +  + 
Sbjct: 64  MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTD----------RERISVTREELYKMLAHE 113

Query: 61  WLRTISVILFLNKQDL 76
            LR   +++F NKQD+
Sbjct: 114 DLRKAGLLIFANKQDV 129

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 12/77 (15%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPT-QNRLRESLDLFKSIWNN 59
           ++D+GGQR  R  W   F +   +I+V            D   + R  E+      +   
Sbjct: 64  VWDIGGQRKIRPYWRSYFENTDILIYVI-----------DSADRKRFEETGQELTELLEE 112

Query: 60  RWLRTISVILFLNKQDL 76
             L  + V++F NKQDL
Sbjct: 113 EKLSCVPVLIFANKQDL 129

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 10/76 (13%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           ++D+GG    R  W   +++  A+I+V            D  ++R+  S     ++    
Sbjct: 55  VWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC--------D--RDRIGISKSELVAMLEEE 104

Query: 61  WLRTISVILFLNKQDL 76
            LR   +++F NKQD+
Sbjct: 105 ELRKAILVVFANKQDM 120

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           ++DVGGQ   R  W   F +   +IFV   +           + R+ E+ +    +    
Sbjct: 48  VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSND----------RERVNEAREELMRMLAED 97

Query: 61  WLRTISVILFLNKQDL 76
            LR   +++F NKQDL
Sbjct: 98  ELRDAVLLVFANKQDL 113

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 47.2 bits (113), Expect = 2e-07
 Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 10/76 (13%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           ++D+GGQ   R  W   F+D  A+I+V   +        D  ++R+  +     ++ +  
Sbjct: 70  VWDLGGQTGVRPYWRCYFSDTDAVIYVVDST--------D--RDRMGVAKHELYALLDED 119

Query: 61  WLRTISVILFLNKQDL 76
            LR   +++F NKQDL
Sbjct: 120 ELRKSLLLIFANKQDL 135

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 10/76 (13%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           ++D+GGQ   R  W +    V+AI+++   +        D  Q ++  S +   ++ +  
Sbjct: 71  LWDIGGQPRFRSMWERYCRGVSAIVYMVDAA--------D--QEKIEASKNELHNLLDKP 120

Query: 61  WLRTISVILFLNKQDL 76
            L+ I V++  NK+DL
Sbjct: 121 QLQGIPVLVLGNKRDL 136

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 46.9 bits (112), Expect = 4e-07
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 12/77 (15%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPT-QNRLRESLDLFKSIWNN 59
           ++DVGGQ   R  W   F +   +IFV            D   + R++ES D  + +   
Sbjct: 77  VWDVGGQDKIRPLWRHYFQNTQGLIFVV-----------DSNDRERVQESADELQKMLQE 125

Query: 60  RWLRTISVILFLNKQDL 76
             LR   +++F NKQD+
Sbjct: 126 DELRDAVLLVFANKQDM 142

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 10/76 (13%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           ++DVGGQ   R  W   F +   +IFV        V   D  + R+ E+ +    +    
Sbjct: 213 VWDVGGQDKIRPLWRHYFQNTQGLIFV--------VDSND--RERVNEAREELMRMLAED 262

Query: 61  WLRTISVILFLNKQDL 76
            LR   +++F NKQDL
Sbjct: 263 ELRDAVLLVFANKQDL 278

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 16/81 (19%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN- 59
           ++ V GQ             V  I+FV            D   NRLR + +  +++  N 
Sbjct: 78  LYTVPGQVFYNASRKLILRGVDGIVFVA-----------DSAPNRLRANAESMRNMRENL 126

Query: 60  ----RWLRTISVILFLNKQDL 76
                 L  + +++ +NK+DL
Sbjct: 127 AEYGLTLDDVPIVIQVNKRDL 147

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 12/78 (15%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           +FD+ GQ   R  W   + +  AIIFV   S        D  + R+  + +   ++ N+ 
Sbjct: 71  VFDMSGQGRYRNLWEHYYKEGQAIIFVIDSS--------D--RLRMVVAKEELDTLLNHP 120

Query: 61  WL--RTISVILFLNKQDL 76
            +  R I ++ F NK DL
Sbjct: 121 DIKHRRIPILFFANKMDL 138

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 41.1 bits (96), Expect = 5e-05
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 13/90 (14%)

Query: 1   MFDVGGQRDERRKWIQC---FNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIW 57
           ++D  GQ D           F    A+I+V                 RL  ++     + 
Sbjct: 73  IWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQD-----DYMEALTRLHITVSKAYKV- 126

Query: 58  NNRWLRTISVILFLNKQDLLAEKVKAGKSR 87
                  ++  +F++K D L++  K    R
Sbjct: 127 ----NPDMNFEVFIHKVDGLSDDHKIETQR 152

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 11/94 (11%)

Query: 1   MFDVGGQRDERRKWIQCFNDVT----AIIFVTACSSYNMVLREDPTQNRLRESLDLFKSI 56
           + D  G    R K              +IF+   +     L          E L    SI
Sbjct: 95  LVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTT------TAEFLVDILSI 148

Query: 57  WNNRWLRTISVILFLNKQDLL-AEKVKAGKSRLE 89
             +     I +++  NK +L  A      K  LE
Sbjct: 149 TESSCENGIDILIACNKSELFTARPPSKIKDALE 182

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 11/94 (11%)

Query: 1   MFDVGGQRDERRKWIQCFNDVT----AIIFVTACSSYNMVLREDPTQNRLRESLDLFKSI 56
           + D  G    R K              +IF+   +     L          E L    SI
Sbjct: 59  LVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTT------TAEFLVDILSI 112

Query: 57  WNNRWLRTISVILFLNKQDLL-AEKVKAGKSRLE 89
             +     I +++  NK +L  A      K  LE
Sbjct: 113 TESSCENGIDILIACNKSELFTARPPSKIKDALE 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	100.0
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	100.0
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	100.0
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	100.0
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	100.0
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.89
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.82
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.82
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.81
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.8
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.8
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.79
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.79
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.79
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.79
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.79
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.79
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.79
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.79
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.79
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.78
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.78
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.78
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.78
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.78
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.77
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.77
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.77
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.77
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.77
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.77
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.77
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.77
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.77
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.77
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.76
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.76
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.76
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.76
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.76
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.76
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.76
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.76
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.76
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.76
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.76
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.76
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.76
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.75
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.75
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.75
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.75
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.75
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.75
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.75
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.75
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.75
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.75
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.75
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.75
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.74
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.74
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.74
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.74
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.74
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.74
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.74
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.74
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.74
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.74
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.74
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.74
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.74
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.74
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.74
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.73
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.73
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.73
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.73
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.73
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.73
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.73
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.73
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.73
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.73
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.72
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.72
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.72
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.72
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.72
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.72
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.71
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.71
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.71
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.71
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.71
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.71
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.71
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.7
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.7
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.69
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.69
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.68
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.68
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.68
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.66
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.65
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.45
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.64
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.63
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.62
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.59
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.57
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.57
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.55
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.52
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.51
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.51
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.5
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.49
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.49
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.48
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.47
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.47
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.4
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.39
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.39
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.36
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.35
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.34
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.34
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.33
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.32
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.29
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.27
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.26
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.25
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.24
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.21
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.19
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.18
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.17
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.16
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.16
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.16
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.15
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.14
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.12
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.12
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.12
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.12
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.11
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.11
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.1
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.09
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.08
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.06
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.06
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.05
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.04
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.03
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.0
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.99
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	98.97
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.97
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	98.97
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.95
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	98.95
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	98.92
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.91
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.9
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.84
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	98.83
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	98.82
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.81
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.79
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	98.79
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.78
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.77
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.76
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.76
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.74
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.74
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.7
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.68
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.67
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.59
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.51
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.5
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.48
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.41
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.41
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.41
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.36
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.35
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.35
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.19
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.18
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.17
1wxq_A	397	GTP-binding protein; structural genomics, riken st	97.88
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.88
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.85
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	97.8
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.79
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	97.53
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	97.52
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.49
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	97.37
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.24
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.9
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	96.8
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.56
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.39
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.17
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	95.39
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	85.59
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	83.02

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=100.00  E-value=8.4e-42  Score=275.30  Aligned_cols=157  Identities=48%  Similarity=0.833  Sum_probs=144.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||||||+++|++|.+||++++++|||+|+|+||+++.++++.+++.+++.||.++++++++.++|++|||||+|+++++
T Consensus       171 iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~k  250 (327)
T 3ohm_A          171 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEK  250 (327)
T ss_dssp             EEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHH
T ss_pred             EEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      +.  ..+++.|||+|++            .+.++++|.+||.++|.++++   +..+.+++|+|||+|+.||+.+|..++
T Consensus       251 i~--~~~l~~~fp~y~g------------~~~~~e~a~~fi~~~F~~~~~---~~~~~i~~~~TsA~d~~nV~~vF~~v~  313 (327)
T 3ohm_A          251 IM--YSHLVDYFPEYDG------------PQRDAQAAREFILKMFVDLNP---DSDKIIYSHFTCATDTENIRFVFAAVK  313 (327)
T ss_dssp             TT--TSCGGGTCTTCCS------------CSSCHHHHHHHHHHHHHSSCT---TTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             hc--cchHhhhchhccC------------CCCCHHHHHHHHHHHHHhhcc---cccCCcEEEEEEeecCHHHHHHHHHHH
Confidence            88  7899999999984            445789999999999999987   567889999999999999999999999


Q ss_pred             HHHHHhhhhhccCC
Q psy12099        161 DIIQRMHLRQYELL  174 (174)
Q Consensus       161 ~~i~~~~~~~~~l~  174 (174)
                      +.|++++|+++||+
T Consensus       314 ~~Il~~~l~~~~l~  327 (327)
T 3ohm_A          314 DTILQLNLKEYNLV  327 (327)
T ss_dssp             HHHHHTTCC-----
T ss_pred             HHHHHHhHHhcCCC
Confidence            99999999999985

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=100.00  E-value=2.5e-39  Score=266.99  Aligned_cols=174  Identities=89%  Similarity=1.432  Sum_probs=155.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||||||+++|++|.+||++++++|||||+++||+++.|+.+.++|.++..||..+++++++.++|++|||||+|++.++
T Consensus       221 iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k  300 (402)
T 1azs_C          221 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEK  300 (402)
T ss_dssp             EEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHH
T ss_pred             ecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhh
Confidence            69999999999999999999999999999999999999999999999999999999998888899999999999999888


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      +..+..++++|||+|.+...+..+...+|.+.++++|..||..+|.++++......+.+++|+|||+|+.||+++|.++.
T Consensus       301 i~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~  380 (402)
T 1azs_C          301 VLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCR  380 (402)
T ss_dssp             HHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             hcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHH
Confidence            74224689999999997666666666667777899999999999999876322234579999999999999999999999


Q ss_pred             HHHHHhhhhhccCC
Q psy12099        161 DIIQRMHLRQYELL  174 (174)
Q Consensus       161 ~~i~~~~~~~~~l~  174 (174)
                      +.|++++++.+||+
T Consensus       381 ~~I~~~~l~~~~~~  394 (402)
T 1azs_C          381 DIIQRMHLRQYELL  394 (402)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhcCc
Confidence            99999999999985

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=100.00  E-value=6e-40  Score=265.49  Aligned_cols=158  Identities=36%  Similarity=0.599  Sum_probs=141.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||||||+++|++|.+||++++++|||+|+|+|||++.|+.+.+++.+++.||..+++++++.++|++|||||+|++.++
T Consensus       165 iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~ek  244 (340)
T 4fid_A          165 LIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEK  244 (340)
T ss_dssp             EEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHH
T ss_pred             cccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhh
Confidence            69999999999999999999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHH------HHhhhcCC--------CCCcceeeeeccc
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEF------LRISTASG--------DGKHYCYPHFTCA  146 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f------~~~~~~~~--------~~~~~~~~~~tsA  146 (174)
                      +.  ..+++++||+|.+            .. ++++|.+||.++|      .++++...        +.++.+++|+|||
T Consensus       245 i~--~~~l~~~fp~y~g------------~~-~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA  309 (340)
T 4fid_A          245 LT--KVPLNTIFPEYTG------------GD-NAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNA  309 (340)
T ss_dssp             HH--HSCGGGTCTTCCC------------TT-CHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECT
T ss_pred             cC--cchHHHhhhhhcC------------CC-CHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEe
Confidence            88  7899999999984            22 6999999999999      66665221        1126799999999


Q ss_pred             ccchhHHHHHHHHHHHHHHhhhhhccCC
Q psy12099        147 VDTENIRRVFNDCRDIIQRMHLRQYELL  174 (174)
Q Consensus       147 ~d~~~i~~~f~~~~~~i~~~~~~~~~l~  174 (174)
                      +|+.||+.+|..+++.|++ +|+++||+
T Consensus       310 ~dt~nv~~vF~~v~~~Il~-~l~~~~~~  336 (340)
T 4fid_A          310 TDGSNIKRVFMLAVDVIMK-NMAANGKM  336 (340)
T ss_dssp             TCHHHHHHHHHHHHHHHHH-HHHHTTCC
T ss_pred             eCcHHHHHHHHHHHHHHHH-HHHHcCCC
Confidence            9999999999999999999 99999885

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=100.00  E-value=3e-37  Score=252.21  Aligned_cols=157  Identities=45%  Similarity=0.755  Sum_probs=132.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||||||+++|++|.+||++++++|||+|+|+||+++.||.+.+++.++..||..+++++++.++|++||+||+|++.++
T Consensus       205 i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~k  284 (362)
T 1zcb_A          205 MVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEK  284 (362)
T ss_dssp             EEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHH
T ss_pred             EEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhh
Confidence            69999999999999999999999999999999999999999999999999999999998888999999999999999998


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      +.  ..++..+||+|++            ...++++|.+|+..+|.++++.  ...+.+++|+|||++++||+++|.++.
T Consensus       285 i~--~~~l~~~fp~y~g------------~~~~~~e~~~~~~~~f~~l~~~--~~~~~~~~~~tSA~d~~nV~~vF~~v~  348 (362)
T 1zcb_A          285 VQ--VVSIKDYFLEFEG------------DPHCLRDVQKFLVECFRGKRRD--QQQRPLYHHFTTAINTENIRLVFRDVK  348 (362)
T ss_dssp             TT--TCCGGGTCTTCCS------------CTTCHHHHHHHHHHHHHTTCSS--CC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred             cc--ccchhhcCccccC------------CCCCHHHHHHHHHHHHHHhhcc--cCCCceEEEEEecCCchhHHHHHHHHH
Confidence            87  7899999999984            2235789999999999988761  114678999999999999999999999


Q ss_pred             HHHHHhhhhhccCC
Q psy12099        161 DIIQRMHLRQYELL  174 (174)
Q Consensus       161 ~~i~~~~~~~~~l~  174 (174)
                      +.|++++|++ ||+
T Consensus       349 ~~i~~~~l~~-~l~  361 (362)
T 1zcb_A          349 DTILHDNLKQ-LML  361 (362)
T ss_dssp             HHHHHHHHC-----
T ss_pred             HHHHHHHHHh-hcc
Confidence            9999999999 885

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=100.00  E-value=6.8e-37  Score=249.36  Aligned_cols=157  Identities=46%  Similarity=0.802  Sum_probs=139.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||||||+++|++|.+||++++++|||+|+++||+++.|+...+++.++..||..+++++++.++|++||+||+|++.++
T Consensus       197 iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~k  276 (353)
T 1cip_A          197 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEK  276 (353)
T ss_dssp             EEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHH
T ss_pred             EEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhh
Confidence            69999999999999999999999999999999999999999999999999999999998888999999999999999988


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      +.  ..+++.+||+|.+.             .+.++|.+|+..+|.++++.  ...+.+++|+|||+++.||+++|.++.
T Consensus       277 i~--~~~l~~~fp~~~g~-------------~~~~e~~~~~~~~f~~l~~~--~~~~~~~~~etSA~~~~nV~~vF~~v~  339 (353)
T 1cip_A          277 IK--KSPLTICYPEYAGS-------------NTYEEAAAYIQCQFEDLNKR--KDTKEIYTHFTCATDTKNVQFVFDAVT  339 (353)
T ss_dssp             HT--TSCGGGTCTTCCSC-------------SCHHHHHHHHHHHHHTTCSC--TTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cc--ccchhhcccccCCC-------------CCHHHHHHHHHHHHHHhhcc--cCCCceEEEEEECcCchhHHHHHHHHH
Confidence            87  68999999999852             25789999999999998752  134679999999999999999999999


Q ss_pred             HHHHHhhhhhccCC
Q psy12099        161 DIIQRMHLRQYELL  174 (174)
Q Consensus       161 ~~i~~~~~~~~~l~  174 (174)
                      +.|++++++++||+
T Consensus       340 ~~i~~~~l~~~~l~  353 (353)
T 1cip_A          340 DVIIKNNLKDCGLF  353 (353)
T ss_dssp             HHHHHHC-------
T ss_pred             HHHHHHHHHHcCCC
Confidence            99999999999985

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=100.00  E-value=6.4e-36  Score=243.66  Aligned_cols=163  Identities=33%  Similarity=0.541  Sum_probs=138.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||||||+++|++|.+||++++++|||+|+++|||++.|+.+.++|+++..||+.+++++.+.++|++|||||+|++.++
T Consensus       187 iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k  266 (354)
T 2xtz_A          187 LFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKK  266 (354)
T ss_dssp             EEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHH
T ss_pred             EEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhh
Confidence            69999999999999999999999999999999999999999999999999999999998878899999999999999888


Q ss_pred             Hhccccch--hhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCC---CCcceeeeecccccchhHHHH
Q psy12099         81 VKAGKSRL--EDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGD---GKHYCYPHFTCAVDTENIRRV  155 (174)
Q Consensus        81 ~~~~~~~l--~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~---~~~~~~~~~tsA~d~~~i~~~  155 (174)
                      +.  ..++  .+|||+|.+...        | +.++++|.+|+.++|.++++....   ..+.+++|+|||++++||+++
T Consensus       267 ~~--~v~l~~~~~fp~y~~~~~--------~-~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~v  335 (354)
T 2xtz_A          267 VL--DVPLNVCEWFRDYQPVSS--------G-KQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKT  335 (354)
T ss_dssp             TT--TSCGGGSGGGTTCCCCSS--------H-HHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHH
T ss_pred             cc--cccccccccccccccccC--------C-CcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHH
Confidence            75  3444  456999973110        2 346889999999999988431111   135678899999999999999


Q ss_pred             HHHHHHHHHHhhhhhccCC
Q psy12099        156 FNDCRDIIQRMHLRQYELL  174 (174)
Q Consensus       156 f~~~~~~i~~~~~~~~~l~  174 (174)
                      |.++.+.|++++++.+||+
T Consensus       336 F~~v~~~I~~~~l~~~~l~  354 (354)
T 2xtz_A          336 FKLVDETLRRRNLLEAGLL  354 (354)
T ss_dssp             HHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHHhccCC
Confidence            9999999999999999985

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.89  E-value=1e-23  Score=160.99  Aligned_cols=111  Identities=15%  Similarity=0.186  Sum_probs=91.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||++|++++..||++++++|+|||+          ++.++|+.+..|+..+.... .+++|++|||||+|+..++
T Consensus        66 iwDtaGqe~~~~l~~~~~~~a~~~ilv~di----------~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r  134 (216)
T 4dkx_A           66 LWDTAGLERFRSLIPSYIRDSAAAVVVYDI----------TNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKR  134 (216)
T ss_dssp             EECCSCTTTCGGGHHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGC
T ss_pred             EEECCCchhhhhHHHHHhccccEEEEEeec----------chhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcC
Confidence            699999999999999999999999999999          89999999999999986653 3679999999999997653


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              +.+++.+|...             ..+.+++|||++|.||+++|+.|+
T Consensus       135 ~V------------------------------~~~e~~~~a~~-------------~~~~~~e~SAktg~nV~e~F~~i~  171 (216)
T 4dkx_A          135 QV------------------------------SIEEGERKAKE-------------LNVMFIETSAKAGYNVKQLFRRVA  171 (216)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             cc------------------------------cHHHHhhHHHH-------------hCCeeEEEeCCCCcCHHHHHHHHH
Confidence            22                              13345544321             236688999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.|.+
T Consensus       172 ~~i~~  176 (216)
T 4dkx_A          172 AALPG  176 (216)
T ss_dssp             HHC--
T ss_pred             HHHHh
Confidence            88764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.82  E-value=3.7e-20  Score=136.50  Aligned_cols=116  Identities=22%  Similarity=0.366  Sum_probs=89.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||++++..|..|+++++++|+|+|+          ++..++.+...|+..++......+.|++|++||+|+..+.
T Consensus        64 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~  133 (181)
T 1fzq_A           64 VWDIGGQRKIRPYWRSYFENTDILIYVIDS----------ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA  133 (181)
T ss_dssp             EEECSSCGGGHHHHHHHHTTCSEEEEEEET----------TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred             EEECCCCHHHHHHHHHHhCCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence            699999999999999999999999999999          7889999999999998776556789999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..   ..+.+.+                                  .+..   ...+.+.+++|||+++.||+++|+++.
T Consensus       134 ~~---~~~~~~~----------------------------------~~~~---~~~~~~~~~~~Sa~~g~gi~~l~~~l~  173 (181)
T 1fzq_A          134 PA---SEIAEGL----------------------------------NLHT---IRDRVWQIQSCSALTGEGVQDGMNWVC  173 (181)
T ss_dssp             CH---HHHHHHT----------------------------------TGGG---CCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             CH---HHHHHHh----------------------------------Cchh---ccCCceEEEEccCCCCCCHHHHHHHHH
Confidence            10   0111110                                  0111   223457789999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.++
T Consensus       174 ~~~~~~  179 (181)
T 1fzq_A          174 KNVNAK  179 (181)
T ss_dssp             HTC---
T ss_pred             HHHHhc
Confidence            877543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.82  E-value=7.2e-20  Score=131.76  Aligned_cols=116  Identities=22%  Similarity=0.383  Sum_probs=89.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++.+++.....|+..++......+.|++|++||+|+..+.
T Consensus        48 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  117 (164)
T 1r8s_A           48 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM  117 (164)
T ss_dssp             EEECCCCGGGHHHHHHHTTTCSEEEEEEET----------TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             EEEcCCChhhHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC
Confidence            699999999999999999999999999999          7889999999999998877666789999999999996531


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                            ..++.....+                               ...   ...+.+.++++||+++.||+++|+++.
T Consensus       118 ------~~~~~~~~~~-------------------------------~~~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~  157 (164)
T 1r8s_A          118 ------NAAEITDKLG-------------------------------LHS---LRHRNWYIQATCATSGDGLYEGLDWLS  157 (164)
T ss_dssp             ------CHHHHHHHTT-------------------------------GGG---CSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             ------CHHHHHHHhC-------------------------------ccc---ccCccEEEEEcccCCCcCHHHHHHHHH
Confidence                  1111100000                               000   223456788999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.++
T Consensus       158 ~~i~~~  163 (164)
T 1r8s_A          158 NQLRNQ  163 (164)
T ss_dssp             HHC---
T ss_pred             HHHhhc
Confidence            887543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.81  E-value=2.2e-19  Score=129.91  Aligned_cols=116  Identities=17%  Similarity=0.272  Sum_probs=91.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++..|..|+++++++|+|+|+          ++..++.....|+..++......+.|++|++||+|+..+.
T Consensus        55 ~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  124 (171)
T 1upt_A           55 VWDLGGLTSIRPYWRCYYSNTDAVIYVVDS----------CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM  124 (171)
T ss_dssp             EEEECCCGGGGGGGGGGCTTCSEEEEEEET----------TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             EEECCCChhhhHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence            699999999999999999999999999999          7888999999999999887656789999999999996531


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..   ..+.+.+                                  ....   .....+.++++||+++.||+++|+++.
T Consensus       125 ~~---~~~~~~~----------------------------------~~~~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~  164 (171)
T 1upt_A          125 TS---SEMANSL----------------------------------GLPA---LKDRKWQIFKTSATKGTGLDEAMEWLV  164 (171)
T ss_dssp             CH---HHHHHHH----------------------------------TGGG---CTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             CH---HHHHHHh----------------------------------Cchh---ccCCceEEEECcCCCCcCHHHHHHHHH
Confidence            00   0111100                                  0000   223457888999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.++
T Consensus       165 ~~i~~~  170 (171)
T 1upt_A          165 ETLKSR  170 (171)
T ss_dssp             HHHHTC
T ss_pred             HHHhhc
Confidence            887643

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.80  E-value=1.4e-19  Score=133.68  Aligned_cols=117  Identities=13%  Similarity=0.141  Sum_probs=86.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||++++.+|..|+++++++|+|+|+++....    .+..++.....|+..+.  ....+.|++||+||+|+..+.
T Consensus        78 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~----~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~  151 (198)
T 3t1o_A           78 LYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLR----ANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDAL  151 (198)
T ss_dssp             EEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHH----HHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCC
T ss_pred             EEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhh----HhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhccccc
Confidence            699999999999999999999999999999210000    04566777777777762  234689999999999986531


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcce-eeeecccccchhHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYC-YPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~-~~~~tsA~d~~~i~~~f~~~  159 (174)
                       .                               .+++.++.             ....+ .++++||+++.||+++|+++
T Consensus       152 -~-------------------------------~~~~~~~~-------------~~~~~~~~~~~Sa~~~~gv~~l~~~l  186 (198)
T 3t1o_A          152 -P-------------------------------VEMVRAVV-------------DPEGKFPVLEAVATEGKGVFETLKEV  186 (198)
T ss_dssp             -C-------------------------------HHHHHHHH-------------CTTCCSCEEECBGGGTBTHHHHHHHH
T ss_pred             -C-------------------------------HHHHHHHH-------------HhcCCceEEEEecCCCcCHHHHHHHH
Confidence             1                               12233331             12234 78899999999999999999


Q ss_pred             HHHHHHhhh
Q psy12099        160 RDIIQRMHL  168 (174)
Q Consensus       160 ~~~i~~~~~  168 (174)
                      .+.++++..
T Consensus       187 ~~~i~~~~~  195 (198)
T 3t1o_A          187 SRLVLARVA  195 (198)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999987654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.80  E-value=1.2e-19  Score=135.73  Aligned_cols=124  Identities=18%  Similarity=0.325  Sum_probs=87.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||++++.+|..|+++++++|+|+|+          ++..++.+...|+..+++.....+.|++|++||+|+..+ 
T Consensus        73 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-  141 (198)
T 1f6b_A           73 TFDLGGHIQARRVWKNYLPAINGIVFLVDC----------ADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA-  141 (198)
T ss_dssp             EEEECC----CCGGGGGGGGCSEEEEEEET----------TCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC-
T ss_pred             EEECCCcHhhHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc-
Confidence            699999999999999999999999999999          889999999999999987655678999999999999752 


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      +.  ...+.+++....    ..++.++.+.                  ..   ...+.+.+++|||+++.||+++|+++.
T Consensus       142 ~~--~~~~~~~~~~~~----~~~~~~~~~~------------------~~---~~~~~~~~~~~SA~~g~gv~~l~~~l~  194 (198)
T 1f6b_A          142 IS--EERLREMFGLYG----QTTGKGSVSL------------------KE---LNARPLEVFMCSVLKRQGYGEGFRWMA  194 (198)
T ss_dssp             CC--HHHHHHHHTCTT----TCCCSSCCCT------------------TT---CCSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred             CC--HHHHHHHhCccc----cccccccccc------------------cc---ccCceEEEEEEECCCCCCHHHHHHHHH
Confidence            11  223344433322    0111110000                  00   012457789999999999999999987


Q ss_pred             HH
Q psy12099        161 DI  162 (174)
Q Consensus       161 ~~  162 (174)
                      +.
T Consensus       195 ~~  196 (198)
T 1f6b_A          195 QY  196 (198)
T ss_dssp             TT
T ss_pred             Hh
Confidence            54

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.79  E-value=3e-19  Score=131.88  Aligned_cols=117  Identities=18%  Similarity=0.287  Sum_probs=92.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++..|..|+++++++|+|+|+          ++.+++.....|+..++......+.|+++++||+|+..+.
T Consensus        70 ~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  139 (189)
T 2x77_A           70 VWDLGGQTGVRPYWRCYFSDTDAVIYVVDS----------TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA  139 (189)
T ss_dssp             EEEECCSSSSCCCCSSSSTTCCEEEEEEET----------TCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC
T ss_pred             EEECCCCHhHHHHHHHHhhcCCEEEEEEeC----------CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC
Confidence            699999999999999999999999999999          7888999999999999887666789999999999996531


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..   ..+.+...                                  ...   ...+.+.++++||+++.||+++|+++.
T Consensus       140 ~~---~~~~~~~~----------------------------------~~~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~  179 (189)
T 2x77_A          140 SE---AEIAEQLG----------------------------------VSS---IMNRTWTIVKSSSKTGDGLVEGMDWLV  179 (189)
T ss_dssp             CH---HHHHHHTT----------------------------------GGG---CCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             CH---HHHHHHhC----------------------------------hhh---ccCCceEEEEccCCCccCHHHHHHHHH
Confidence            00   01111100                                  000   223456789999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.+.++.
T Consensus       180 ~~i~~~~  186 (189)
T 2x77_A          180 ERLREQG  186 (189)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhcc
Confidence            9887653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.79  E-value=1.5e-19  Score=130.39  Aligned_cols=113  Identities=19%  Similarity=0.180  Sum_probs=75.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++.++.+|..|+++++++|+|+|+          ++..++.....|+..+.......+.|++|++||+|+..++
T Consensus        53 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  122 (166)
T 3q72_A           53 VYDIWEQDGGRWLPGHCMAMGDAYVIVYSV----------TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR  122 (166)
T ss_dssp             EEECC---------------CCEEEEEEET----------TCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSC
T ss_pred             EEECCCCccchhhhhhhhhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccccc
Confidence            699999999999999999999999999999          8899999999999998876556789999999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.+..+..             ...+.++++||+++.||+++|+++.
T Consensus       123 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A          123 EV------------------------------SVDEGRACAV-------------VFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------HTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHH-------------HhCCcEEEeccCCCCCHHHHHHHHH
Confidence            11                              1122222211             1235788999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+..+
T Consensus       160 ~~~~~~  165 (166)
T 3q72_A          160 RQIRLR  165 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.79  E-value=3e-19  Score=132.65  Aligned_cols=119  Identities=20%  Similarity=0.347  Sum_probs=90.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.+...|+..+++.....+.|++|++||+|+..+ 
T Consensus        71 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-  139 (190)
T 1m2o_B           71 TFDLGGHIQARRLWKDYFPEVNGIVFLVDA----------ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA-  139 (190)
T ss_dssp             EEECCCSGGGTTSGGGGCTTCCEEEEEEET----------TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC-
T ss_pred             EEECCCCHHHHHHHHHHHhcCCEEEEEEEC----------CChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC-
Confidence            699999999999999999999999999999          889999999999999987655678999999999999752 


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  ...+.+++.....        .+.|.                 +     +..+.+.+++|||+++.||+++|+++.
T Consensus       140 ~~--~~~~~~~~~~~~~--------~~~~~-----------------~-----~~~~~~~~~~~Sa~~g~gi~~l~~~l~  187 (190)
T 1m2o_B          140 VS--EAELRSALGLLNT--------TGSQR-----------------I-----EGQRPVEVFMCSVVMRNGYLEAFQWLS  187 (190)
T ss_dssp             CC--HHHHHHHTTCSSC--------CC--------------------C-----CSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred             CC--HHHHHHHhCCccc--------ccccc-----------------c-----cccceEEEEEeECCcCCCHHHHHHHHH
Confidence            11  1233333322210        00010                 0     123457789999999999999999987


Q ss_pred             HH
Q psy12099        161 DI  162 (174)
Q Consensus       161 ~~  162 (174)
                      +.
T Consensus       188 ~~  189 (190)
T 1m2o_B          188 QY  189 (190)
T ss_dssp             TT
T ss_pred             hh
Confidence            53

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.79  E-value=4.7e-19  Score=130.39  Aligned_cols=116  Identities=22%  Similarity=0.333  Sum_probs=91.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++..|..|+++++++|+|+|+          ++..++.+...|+..++......+.|+++++||+|+..+.
T Consensus        66 ~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  135 (186)
T 1ksh_A           66 IWDVGGQKSLRSYWRNYFESTDGLIWVVDS----------ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL  135 (186)
T ss_dssp             EEEECCSHHHHTTGGGGCTTCSEEEEEEET----------TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             EEECCCCHhHHHHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence            699999999999999999999999999999          8899999999999999887666789999999999996531


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..   ..+.+.+                                  ....   .....+.++++||+++.||+++|+++.
T Consensus       136 ~~---~~~~~~~----------------------------------~~~~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~  175 (186)
T 1ksh_A          136 SC---NAIQEAL----------------------------------ELDS---IRSHHWRIQGCSAVTGEDLLPGIDWLL  175 (186)
T ss_dssp             CH---HHHHHHT----------------------------------TGGG---CCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             CH---HHHHHHh----------------------------------Chhh---ccCCceEEEEeeCCCCCCHHHHHHHHH
Confidence            10   0111110                                  0000   223457889999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.++
T Consensus       176 ~~i~~~  181 (186)
T 1ksh_A          176 DDISSR  181 (186)
T ss_dssp             HHHHTC
T ss_pred             HHHHhc
Confidence            887654

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.79  E-value=1.8e-19  Score=133.61  Aligned_cols=118  Identities=18%  Similarity=0.305  Sum_probs=91.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCC-------CCCcEEEEEeC
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWL-------RTISVILFLNK   73 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~-------~~~~iilv~NK   73 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..++.....       .+.|++||+||
T Consensus        67 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~----------~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK  136 (199)
T 4bas_A           67 VFDMGGAKKFRGLWETYYDNIDAVIFVVDS----------SDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANK  136 (199)
T ss_dssp             EEEECCSGGGGGGGGGGCTTCSEEEEEEET----------TCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEEC
T ss_pred             EEECCCCHhHHHHHHHHHhcCCEEEEEEEC----------CcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEEC
Confidence            699999999999999999999999999999          8899999999999998776332       37899999999


Q ss_pred             CchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHH
Q psy12099         74 QDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIR  153 (174)
Q Consensus        74 ~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~  153 (174)
                      +|+..+.      ...+.                          .+.+...+  +     .....+.+++|||+++.||+
T Consensus       137 ~Dl~~~~------~~~~~--------------------------~~~~~~~~--~-----~~~~~~~~~~~Sa~~g~gv~  177 (199)
T 4bas_A          137 MDAAGAK------TAAEL--------------------------VEILDLTT--L-----MGDHPFVIFASNGLKGTGVH  177 (199)
T ss_dssp             TTSTTCC------CHHHH--------------------------HHHHTHHH--H-----HTTSCEEEEECBTTTTBTHH
T ss_pred             cCCCCCC------CHHHH--------------------------HHHhcchh--h-----ccCCeeEEEEeeCCCccCHH
Confidence            9997542      11111                          01110000  0     02345788999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q psy12099        154 RVFNDCRDIIQRMH  167 (174)
Q Consensus       154 ~~f~~~~~~i~~~~  167 (174)
                      ++|+++.+.+.++.
T Consensus       178 ~l~~~l~~~~~~~~  191 (199)
T 4bas_A          178 EGFSWLQETASRQS  191 (199)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988664

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.79  E-value=4.1e-19  Score=130.11  Aligned_cols=116  Identities=21%  Similarity=0.302  Sum_probs=88.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++..|..|+++++++|+|+|+          ++..++.+...|+..+++.....+.|+++++||+|+..+.
T Consensus        66 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  135 (183)
T 1moz_A           66 VWDLGGQTSIRPYWRCYYADTAAVIFVVDS----------TDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL  135 (183)
T ss_dssp             EEEEC----CCTTGGGTTTTEEEEEEEEET----------TCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC
T ss_pred             EEECCCCHhHHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC
Confidence            699999999999999999999999999999          7889999999999998876556789999999999996531


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                       .  ...+.+.+...                                  .   .....+.++++||+++.||+++|+++.
T Consensus       136 -~--~~~i~~~~~~~----------------------------------~---~~~~~~~~~~~Sa~~~~gi~~l~~~l~  175 (183)
T 1moz_A          136 -S--ASEVSKELNLV----------------------------------E---LKDRSWSIVASSAIKGEGITEGLDWLI  175 (183)
T ss_dssp             -C--HHHHHHHTTTT----------------------------------T---CCSSCEEEEEEBGGGTBTHHHHHHHHH
T ss_pred             -C--HHHHHHHhCcc----------------------------------c---ccCCceEEEEccCCCCcCHHHHHHHHH
Confidence             0  11121111100                                  0   223456788999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.++
T Consensus       176 ~~~~~~  181 (183)
T 1moz_A          176 DVIKEE  181 (183)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            988765

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.79  E-value=2.5e-19  Score=133.27  Aligned_cols=114  Identities=23%  Similarity=0.399  Sum_probs=85.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..++......+.|++||+||+|+..+.
T Consensus        77 i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~----------~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~  146 (192)
T 2b6h_A           77 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM  146 (192)
T ss_dssp             EEECC-----CTTHHHHHHTCCEEEEEEET----------TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             EEECCCCHhHHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC
Confidence            699999999999999999999999999999          7889999999999999877666789999999999996531


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                            ..++.....+                               ...   ...+.+.+++|||+++.||+++|+++.
T Consensus       147 ------~~~~i~~~~~-------------------------------~~~---~~~~~~~~~~~SA~~g~gi~~l~~~l~  186 (192)
T 2b6h_A          147 ------PVSELTDKLG-------------------------------LQH---LRSRTWYVQATCATQGTGLYDGLDWLS  186 (192)
T ss_dssp             ------CHHHHHHHTT-------------------------------GGG---CSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             ------CHHHHHHHhC-------------------------------ccc---ccCCceEEEECcCCCcCCHHHHHHHHH
Confidence                  1111111110                               000   223456788999999999999999998


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.+.
T Consensus       187 ~~i~  190 (192)
T 2b6h_A          187 HELS  190 (192)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            8764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.79  E-value=3e-19  Score=133.74  Aligned_cols=113  Identities=16%  Similarity=0.143  Sum_probs=90.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.... ..+.|++||+||+|+..++
T Consensus        82 i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~----------~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~  150 (201)
T 2hup_A           82 IWDTAGQERFRTITQSYYRSANGAILAYDI----------TKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELR  150 (201)
T ss_dssp             EECCTTCGGGHHHHHHHHTTCSEEEEEEET----------TBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGC
T ss_pred             EEECCCcHhHHHHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCcccccc
Confidence            699999999999999999999999999999          78889998888988876543 3678999999999997532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcce-eeeecccccchhHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYC-YPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~-~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ..                              ..+++.++...             ..+ .+++|||+++.||+++|+++
T Consensus       151 ~v------------------------------~~~~~~~~~~~-------------~~~~~~~~~SA~~g~gi~~l~~~l  187 (201)
T 2hup_A          151 EV------------------------------SLAEAQSLAEH-------------YDILCAIETSAKDSSNVEEAFLRV  187 (201)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------TTCSEEEECBTTTTBSHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHHH-------------cCCCEEEEEeCCCCCCHHHHHHHH
Confidence            11                              12233333211             124 67899999999999999999


Q ss_pred             HHHHHHhh
Q psy12099        160 RDIIQRMH  167 (174)
Q Consensus       160 ~~~i~~~~  167 (174)
                      .+.+.++.
T Consensus       188 ~~~i~~~~  195 (201)
T 2hup_A          188 ATELIMRH  195 (201)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99998653

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.79  E-value=7.4e-19  Score=129.65  Aligned_cols=114  Identities=19%  Similarity=0.357  Sum_probs=85.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++.+++.....|+..+.......+.|++||+||+|+..+.
T Consensus        64 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~  133 (187)
T 1zj6_A           64 MWDIGGQESLRSSWNTYYTNTEFVIVVVDS----------TDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM  133 (187)
T ss_dssp             EEECCC----CGGGHHHHTTCCEEEEEEET----------TCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC
T ss_pred             EEECCCCHhHHHHHHHHhcCCCEEEEEEeC----------CCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC
Confidence            699999999999999999999999999999          7888999999999999876555689999999999996421


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                            ..                          ++..+++     ....   .....+.++++||+++.||+++|+++.
T Consensus       134 ------~~--------------------------~~i~~~~-----~~~~---~~~~~~~~~~~Sa~~g~gi~~l~~~l~  173 (187)
T 1zj6_A          134 ------TV--------------------------AEISQFL-----KLTS---IKDHQWHIQACCALTGEGLCQGLEWMM  173 (187)
T ss_dssp             ------CH--------------------------HHHHHHH-----TGGG---CCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             ------CH--------------------------HHHHHHh-----Chhh---hcCCCcEEEEccCCCCcCHHHHHHHHH
Confidence                  00                          1111111     0110   123457888999999999999999999


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.+.
T Consensus       174 ~~~~  177 (187)
T 1zj6_A          174 SRLK  177 (187)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.78  E-value=5.4e-19  Score=129.86  Aligned_cols=112  Identities=19%  Similarity=0.358  Sum_probs=87.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.+...|+..++......+.|++|++||+|+..+.
T Consensus        69 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~  138 (181)
T 2h17_A           69 MWDIGGQESLRSSWNTYYTNTEFVIVVVDS----------TDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM  138 (181)
T ss_dssp             EEEESSSGGGTCGGGGGGTTCCEEEEEEET----------TCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             EEECCCCHhHHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC
Confidence            699999999999999999999999999999          7889999999999998876555789999999999996521


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..   ..+.+.+                                  ....   .....+.++++||+++.||+++|+++.
T Consensus       139 ~~---~~i~~~~----------------------------------~~~~---~~~~~~~~~~~Sa~~g~gi~~l~~~l~  178 (181)
T 2h17_A          139 TV---AEISQFL----------------------------------KLTS---IKDHQWHIQACCALTGEGLCQGLEWMM  178 (181)
T ss_dssp             CH---HHHHHHT----------------------------------TGGG---CCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             CH---HHHHHHh----------------------------------Cccc---ccCCceEEEEccCCCCcCHHHHHHHHH
Confidence            00   1111111                                  0011   223456889999999999999999987


Q ss_pred             HH
Q psy12099        161 DI  162 (174)
Q Consensus       161 ~~  162 (174)
                      +.
T Consensus       179 ~~  180 (181)
T 2h17_A          179 SR  180 (181)
T ss_dssp             TC
T ss_pred             hh
Confidence            54

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.78  E-value=3.4e-19  Score=130.47  Aligned_cols=114  Identities=17%  Similarity=0.097  Sum_probs=89.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..+++....|+..+.+.....+.|++|++||+|+..++
T Consensus        58 l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  127 (181)
T 3t5g_A           58 LVDTAGQDEYSIFPQTYSIDINGYILVYSV----------TSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER  127 (181)
T ss_dssp             EEECCCCCTTCCCCGGGTTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTC
T ss_pred             EEeCCCchhhhHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcc
Confidence            699999999999999999999999999999          8899999999999988776555689999999999986432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+...             ..+.++++||+++.||.++|+++.
T Consensus       128 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~v~~l~~~l~  164 (181)
T 3t5g_A          128 VI------------------------------SYEEGKALAES-------------WNAAFLESSAKENQTAVDVFRRII  164 (181)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------TTCEEEECCTTSHHHHHHHHHHHH
T ss_pred             ee------------------------------cHHHHHHHHHH-------------hCCcEEEEecCCCCCHHHHHHHHH
Confidence            11                              12233333221             235688999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.+.+.+
T Consensus       165 ~~~~~~~  171 (181)
T 3t5g_A          165 LEAEKMD  171 (181)
T ss_dssp             HHHHTC-
T ss_pred             HHHHHhc
Confidence            9887653

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.78  E-value=7.6e-20  Score=147.00  Aligned_cols=120  Identities=16%  Similarity=0.174  Sum_probs=78.9

Q ss_pred             CeeCCCCchhhh---hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC--CCCCCCcEEEEEeCCc
Q psy12099          1 MFDVGGQRDERR---KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN--RWLRTISVILFLNKQD   75 (174)
Q Consensus         1 iwD~~Gq~~~r~---~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~--~~~~~~~iilv~NK~D   75 (174)
                      |||||||++|++   .+.+||++++++|+|+|+          ++.  +.++..||..++..  ...+++|++|+|||+|
T Consensus        50 IWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Di----------td~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~D  117 (331)
T 3r7w_B           50 VMELPGQLNYFEPSYDSERLFKSVGALVYVIDS----------QDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVD  117 (331)
T ss_dssp             EEECCSCSSSCCCSHHHHHHHTTCSEEEEECCC----------SSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCC
T ss_pred             EEECCCchhccchhhhhhhhccCCCEEEEEEEC----------Cch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcc
Confidence            699999999985   469999999999999999          555  55566666554432  1235799999999999


Q ss_pred             hhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHH
Q psy12099         76 LLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRV  155 (174)
Q Consensus        76 l~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~  155 (174)
                      +..+...  ....++.                     ..+++.++        .+. +.....+.+++|||+| .||.++
T Consensus       118 L~~~~~R--~~~~R~V---------------------~~~~~~~l--------a~~-~~~~~~i~f~eTSAkd-~nV~eA  164 (331)
T 3r7w_B          118 GLSEDFK--VDAQRDI---------------------MQRTGEEL--------LEL-GLDGVQVSFYLTSIFD-HSIYEA  164 (331)
T ss_dssp             SSCSHHH--HHHHHHH---------------------HHHHHHTT--------SSS-SCSCCCEEEECCCSSS-SHHHHH
T ss_pred             cCchhhh--hhHHHHh---------------------hHHHHHHH--------Hhh-cccccCceEEEeccCC-CcHHHH
Confidence            9753211  0000000                     00111111        000 0002468899999999 599999


Q ss_pred             HHHHHHHHHH
Q psy12099        156 FNDCRDIIQR  165 (174)
Q Consensus       156 f~~~~~~i~~  165 (174)
                      |..+...|+.
T Consensus       165 Fs~iv~~li~  174 (331)
T 3r7w_B          165 FSRIVQKLIP  174 (331)
T ss_dssp             HHHHHTTSST
T ss_pred             HHHHHHHHHh
Confidence            9999977653

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.78  E-value=2.8e-19  Score=131.10  Aligned_cols=115  Identities=15%  Similarity=0.113  Sum_probs=77.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.... ..++|++||+||+|+..++
T Consensus        61 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~  129 (183)
T 2fu5_C           61 IWDTAGQERFRTITTAYYRGAMGIMLVYDI----------TNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKR  129 (183)
T ss_dssp             EEEC---------CCTTTTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCC
T ss_pred             EEcCCCChhhhhhHHHHHhcCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccC
Confidence            699999999999999999999999999999          78889998888888876542 3578999999999986432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+...             ..+.++++||+++.||+++|.++.
T Consensus       130 ~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~i~~l~~~l~  166 (183)
T 2fu5_C          130 QV------------------------------SKERGEKLALD-------------YGIKFMETSAKANINVENAFFTLA  166 (183)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCEEEECCC---CCHHHHHHHHH
T ss_pred             cC------------------------------CHHHHHHHHHH-------------cCCeEEEEeCCCCCCHHHHHHHHH
Confidence            11                              12233333221             225788999999999999999999


Q ss_pred             HHHHHhhhh
Q psy12099        161 DIIQRMHLR  169 (174)
Q Consensus       161 ~~i~~~~~~  169 (174)
                      +.+.++..+
T Consensus       167 ~~i~~~~~~  175 (183)
T 2fu5_C          167 RDIKAKMDK  175 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhhc
Confidence            999876544

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.78  E-value=7.8e-19  Score=129.89  Aligned_cols=115  Identities=18%  Similarity=0.293  Sum_probs=89.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++++..|..|+++++++|+|+|+          ++..++.....|+..++......+.|++||+||+|+..+.
T Consensus        71 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~  140 (188)
T 1zd9_A           71 LWDIGGQPRFRSMWERYCRGVSAIVYMVDA----------ADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL  140 (188)
T ss_dssp             EEEECCSHHHHTTHHHHHTTCSEEEEEEET----------TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC
T ss_pred             EEECCCCHhHHHHHHHHHccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC
Confidence            699999999999999999999999999999          7889999999999999876555789999999999996531


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                            ...+......                               ...   .....+.++++||+++.||+++|+++.
T Consensus       141 ------~~~~~~~~~~-------------------------------~~~---~~~~~~~~~~~SA~~g~gv~~l~~~l~  180 (188)
T 1zd9_A          141 ------DEKELIEKMN-------------------------------LSA---IQDREICCYSISCKEKDNIDITLQWLI  180 (188)
T ss_dssp             ------CHHHHHHHTT-------------------------------GGG---CCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             ------CHHHHHHHhC-------------------------------hhh---hccCCeeEEEEECCCCCCHHHHHHHHH
Confidence                  1011100000                               000   123446778999999999999999998


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.+.+
T Consensus       181 ~~~~~  185 (188)
T 1zd9_A          181 QHSKS  185 (188)
T ss_dssp             HTCC-
T ss_pred             HHHHh
Confidence            87644

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.77  E-value=3.9e-19  Score=128.50  Aligned_cols=113  Identities=19%  Similarity=0.201  Sum_probs=84.9

Q ss_pred             CeeCCCCchhhh-hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERR-KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~-~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|++.++. +|..|+++++++|+|+|+          ++..++.....|+..+.......+.|++|++||+|+..+
T Consensus        55 i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  124 (169)
T 3q85_A           55 VYDIWEQGDAGGWLQDHCLQTGDAFLIVFSV----------TDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS  124 (169)
T ss_dssp             EECCCCC--------CHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGG
T ss_pred             EEECCCccccchhhhhhhhccCCEEEEEEEC----------CChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhc
Confidence            699999999987 889999999999999999          889999999999999887655568999999999999754


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      +..                              ..+++..+..             ...+.++++||+++.||+++|+++
T Consensus       125 ~~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A          125 REV------------------------------SLEEGRHLAG-------------TLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             CCS------------------------------CHHHHHHHHH-------------HTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             ccC------------------------------CHHHHHHHHH-------------HcCCcEEEecCccCCCHHHHHHHH
Confidence            211                              1222333321             123577899999999999999999


Q ss_pred             HHHHHHh
Q psy12099        160 RDIIQRM  166 (174)
Q Consensus       160 ~~~i~~~  166 (174)
                      .+.+..+
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.77  E-value=6.4e-19  Score=129.00  Aligned_cols=116  Identities=20%  Similarity=0.169  Sum_probs=93.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.......+.|++||+||+|+..++
T Consensus        70 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  139 (187)
T 2a9k_A           70 ILDTAGQEDYAAIRDNYFRSGEGFLCVFSI----------TEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR  139 (187)
T ss_dssp             EEECCCTTCCHHHHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGC
T ss_pred             EEECCCCcccHHHHHHHhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccC
Confidence            699999999999999999999999999999          7889999999998888776555589999999999996542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.++...             ..+.++++||+++.||+++|+++.
T Consensus       140 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~  176 (187)
T 2a9k_A          140 QV------------------------------SVEEAKNRAEQ-------------WNVNYVETSAKTRANVDKVFFDLM  176 (187)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHHH-------------cCCeEEEeCCCCCCCHHHHHHHHH
Confidence            11                              12233333221             235688999999999999999999


Q ss_pred             HHHHHhhhh
Q psy12099        161 DIIQRMHLR  169 (174)
Q Consensus       161 ~~i~~~~~~  169 (174)
                      +.+.++..+
T Consensus       177 ~~i~~~~~~  185 (187)
T 2a9k_A          177 REIRARKME  185 (187)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHhhcc
Confidence            999876543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.77  E-value=6.1e-19  Score=131.75  Aligned_cols=114  Identities=16%  Similarity=0.175  Sum_probs=89.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|++.++.+|..|+++++++|+|+|+          ++..++.....|+..+.......++|++||+||+|+..++
T Consensus        76 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  145 (201)
T 3oes_A           76 LVDTAGQDEYSILPYSFIIGVHGYVLVYSV----------TSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPER  145 (201)
T ss_dssp             EEEECCCCTTCCCCGGGTTTCCEEEEEEET----------TCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGC
T ss_pred             EEECCCccchHHHHHHHHhcCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCcccc
Confidence            699999999999999999999999999999          8899999999999998876555689999999999997543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+...             ..+.++++||+++.||+++|+++.
T Consensus       146 ~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~v~~l~~~l~  182 (201)
T 3oes_A          146 EV------------------------------QAVEGKKLAES-------------WGATFMESSARENQLTQGIFTKVI  182 (201)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHHH-------------hCCeEEEEeCCCCCCHHHHHHHHH
Confidence            11                              11223333211             225678999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.+.+..
T Consensus       183 ~~i~~~~  189 (201)
T 3oes_A          183 QEIARVE  189 (201)
T ss_dssp             HHHHHC-
T ss_pred             HHHHhhh
Confidence            9987653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.77  E-value=4.2e-19  Score=132.56  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=89.5

Q ss_pred             CeeCCCCchhhh-hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERR-KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~-~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|+++++. +|..|+++++++|+|+|+          ++..++.....|+..+.......++|++|++||+|+..+
T Consensus        76 i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  145 (195)
T 3cbq_A           76 VYDIWEQGDAGGWLRDHCLQTGDAFLIVFSV----------TDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS  145 (195)
T ss_dssp             EECCCCCSGGGHHHHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTT
T ss_pred             EEecCCCccchhhhHHHhhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcccc
Confidence            699999998876 899999999999999999          889999999999988876544457999999999999653


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      +..                              ..+++..+...             ..+.+++|||+++.||+++|+++
T Consensus       146 ~~v------------------------------~~~~~~~~a~~-------------~~~~~~e~Sa~~~~~v~~lf~~l  182 (195)
T 3cbq_A          146 REV------------------------------SLEEGRHLAGT-------------LSCKHIETSAALHHNTRELFEGA  182 (195)
T ss_dssp             CCS------------------------------CHHHHHHHHHH-------------TTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             CCc------------------------------CHHHHHHHHHH-------------hCCEEEEEcCCCCCCHHHHHHHH
Confidence            211                              12223333211             12567899999999999999999


Q ss_pred             HHHHHHhh
Q psy12099        160 RDIIQRMH  167 (174)
Q Consensus       160 ~~~i~~~~  167 (174)
                      .+.+..+.
T Consensus       183 ~~~i~~~~  190 (195)
T 3cbq_A          183 VRQIRLRR  190 (195)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHhc
Confidence            99886543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.77  E-value=3e-19  Score=130.97  Aligned_cols=112  Identities=17%  Similarity=0.148  Sum_probs=90.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++.++.+|..|+++++++|+|+|+          ++..++.....|+..+.......+.|++|++||+|+..++
T Consensus        70 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  139 (183)
T 3kkq_A           70 VLDTAGQEEFSAMREQYMRTGDGFLIVYSV----------TDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR  139 (183)
T ss_dssp             EEECCSCGGGCSSHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTC
T ss_pred             EEECCCchhhHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhcc
Confidence            599999999999999999999999999999          8899999999998888765455688999999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc-cchhHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV-DTENIRRVFNDC  159 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~-d~~~i~~~f~~~  159 (174)
                      ..                              ..+++..+...             ..+.++++||+ ++.||+++|+++
T Consensus       140 ~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~~v~~l~~~l  176 (183)
T 3kkq_A          140 KV------------------------------TRDQGKEMATK-------------YNIPYIETSAKDPPLNVDKTFHDL  176 (183)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCCEEEEBCSSSCBSHHHHHHHH
T ss_pred             Cc------------------------------CHHHHHHHHHH-------------hCCeEEEeccCCCCCCHHHHHHHH
Confidence            11                              12223333221             12568899999 999999999999


Q ss_pred             HHHHHH
Q psy12099        160 RDIIQR  165 (174)
Q Consensus       160 ~~~i~~  165 (174)
                      .+.+.+
T Consensus       177 ~~~i~~  182 (183)
T 3kkq_A          177 VRVIRQ  182 (183)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            998875

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.77  E-value=4.5e-19  Score=127.38  Aligned_cols=112  Identities=21%  Similarity=0.166  Sum_probs=87.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.......+.|+++++||+|+..++
T Consensus        56 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  125 (168)
T 1u8z_A           56 ILDTAGQEDYAAIRDNYFRSGEGFLCVFSI----------TEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR  125 (168)
T ss_dssp             EEECCC---CHHHHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGC
T ss_pred             EEECCCcchhHHHHHHHhhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccC
Confidence            699999999999999999999999999999          7889999999998888776555689999999999996542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.++...             ..+.++++||+++.||+++|+++.
T Consensus       126 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~  162 (168)
T 1u8z_A          126 QV------------------------------SVEEAKNRADQ-------------WNVNYVETSAKTRANVDKVFFDLM  162 (168)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHHH-------------cCCeEEEeCCCCCCCHHHHHHHHH
Confidence            11                              12233333221             125688999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.+.+
T Consensus       163 ~~i~~  167 (168)
T 1u8z_A          163 REIRA  167 (168)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.77  E-value=1.1e-18  Score=128.43  Aligned_cols=115  Identities=15%  Similarity=0.137  Sum_probs=91.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++..|..|+++++++|+|+|+          ++..++.....|+..+.......+.|++||+||+|+..++
T Consensus        74 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  143 (195)
T 3bc1_A           74 LWDTAGLERFRSLTTAFFRDAMGFLLLFDL----------TNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQR  143 (195)
T ss_dssp             EEEECCSGGGHHHHHHTTTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGC
T ss_pred             EEeCCCcHHHHHHHHHHHcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence            699999999999999999999999999999          7888999888999888766544689999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.+.++...             ..+.++++||+++.||+++|+++.
T Consensus       144 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~v~~l~~~l~  180 (195)
T 3bc1_A          144 AV------------------------------KEEEARELAEK-------------YGIPYFETSAANGTNISHAIEMLL  180 (195)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHHH-------------cCCCEEEEECCCCCCHHHHHHHHH
Confidence            11                              01223333211             125678999999999999999999


Q ss_pred             HHHHHhhh
Q psy12099        161 DIIQRMHL  168 (174)
Q Consensus       161 ~~i~~~~~  168 (174)
                      +.+.++..
T Consensus       181 ~~~~~~~~  188 (195)
T 3bc1_A          181 DLIMKRME  188 (195)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99987643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.77  E-value=7.7e-19  Score=130.11  Aligned_cols=114  Identities=17%  Similarity=0.173  Sum_probs=90.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.... ..+.|++||+||+|+..++
T Consensus        74 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~  142 (191)
T 2a5j_A           74 IWDTAGQESFRSITRSYYRGAAGALLVYDI----------TRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRR  142 (191)
T ss_dssp             EECCTTGGGTSCCCHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGC
T ss_pred             EEECCCchhhhhhHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCcc
Confidence            699999999999999999999999999999          78889998888888876542 3578999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+...             ..+.++++||+++.||+++|+++.
T Consensus       143 ~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~  179 (191)
T 2a5j_A          143 DV------------------------------KREEGEAFARE-------------HGLIFMETSAKTACNVEEAFINTA  179 (191)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHHH-------------cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11                              12233333221             225688999999999999999999


Q ss_pred             HHHHHhhh
Q psy12099        161 DIIQRMHL  168 (174)
Q Consensus       161 ~~i~~~~~  168 (174)
                      +.+.++..
T Consensus       180 ~~i~~~~~  187 (191)
T 2a5j_A          180 KEIYRKIQ  187 (191)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987643

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.77  E-value=1.9e-18  Score=127.79  Aligned_cols=114  Identities=22%  Similarity=0.327  Sum_probs=89.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCC--CCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWL--RTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~--~~~~iilv~NK~Dl~~   78 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..++.....  .+.|++||+||+|+..
T Consensus        71 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~  140 (190)
T 2h57_A           71 VFDMSGQGRYRNLWEHYYKEGQAIIFVIDS----------SDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD  140 (190)
T ss_dssp             EEEECCSTTTGGGGGGGGGGCSEEEEEEET----------TCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred             EEECCCCHHHHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence            699999999999999999999999999999          7889999999999999877555  6899999999999964


Q ss_pred             HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099         79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND  158 (174)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~  158 (174)
                      +.      .                          .++..+++     .+..   .....+.++++||+++.||+++|++
T Consensus       141 ~~------~--------------------------~~~~~~~~-----~~~~---~~~~~~~~~~~Sa~~~~gi~~l~~~  180 (190)
T 2h57_A          141 AV------T--------------------------SVKVSQLL-----CLEN---IKDKPWHICASDAIKGEGLQEGVDW  180 (190)
T ss_dssp             CC------C--------------------------HHHHHHHH-----TGGG---CCSSCEEEEECBTTTTBTHHHHHHH
T ss_pred             CC------C--------------------------HHHHHHHh-----Chhh---ccCCceEEEEccCCCCcCHHHHHHH
Confidence            21      1                          11111111     1111   1224578889999999999999999


Q ss_pred             HHHHHH
Q psy12099        159 CRDIIQ  164 (174)
Q Consensus       159 ~~~~i~  164 (174)
                      +.+.+.
T Consensus       181 l~~~i~  186 (190)
T 2h57_A          181 LQDQIQ  186 (190)
T ss_dssp             HHHHC-
T ss_pred             HHHHHH
Confidence            988764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.77  E-value=8.1e-19  Score=127.83  Aligned_cols=114  Identities=19%  Similarity=0.169  Sum_probs=91.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+++.....+.|++|++||+|+..++
T Consensus        61 ~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  130 (181)
T 2fn4_A           61 ILDTAGQEEFGAMREQYMRAGHGFLLVFAI----------NDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQR  130 (181)
T ss_dssp             EEECCCTTTTSCCHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGC
T ss_pred             EEECCCchhhHHHHHHHHhhCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence            699999999999999999999999999999          7889999999999888665555678999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..             ...+.++++||+++.||+++|+++.
T Consensus       131 ~v------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gv~~l~~~l~  167 (181)
T 2fn4_A          131 QV------------------------------PRSEASAFGA-------------SHHVAYFEASAKLRLNVDEAFEQLV  167 (181)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------HTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHH-------------HcCCeEEEecCCCCCCHHHHHHHHH
Confidence            11                              0122333311             1235788999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.+.+..
T Consensus       168 ~~~~~~~  174 (181)
T 2fn4_A          168 RAVRKYQ  174 (181)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            9987654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.76  E-value=9.8e-19  Score=128.39  Aligned_cols=113  Identities=17%  Similarity=0.116  Sum_probs=87.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++.++.+|..|+++++++|+|+|+          ++..++.....|+..+.......+.|+++++||+|+....
T Consensus        56 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~  125 (189)
T 4dsu_A           56 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAI----------NNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRT  125 (189)
T ss_dssp             EEECCCC---CTTHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCS
T ss_pred             EEECCCcHHHHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccc
Confidence            599999999999999999999999999999          8899999999999888776556689999999999986422


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                               .+.+..+...             ..+.++++||+++.||+++|+++.
T Consensus       126 ~~-------------------------------~~~~~~~~~~-------------~~~~~~~~Sa~~g~gi~~l~~~l~  161 (189)
T 4dsu_A          126 VD-------------------------------TKQAQDLARS-------------YGIPFIETSAKTRQGVDDAFYTLV  161 (189)
T ss_dssp             SC-------------------------------HHHHHHHHHH-------------HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             cC-------------------------------HHHHHHHHHH-------------cCCeEEEEeCCCCCCHHHHHHHHH
Confidence            11                               1222222111             125678999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.+.+..
T Consensus       162 ~~~~~~~  168 (189)
T 4dsu_A          162 REIRKHK  168 (189)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9987653

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.76  E-value=9.7e-19  Score=129.15  Aligned_cols=112  Identities=16%  Similarity=0.148  Sum_probs=90.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.......+.|++||+||+|+....
T Consensus        68 i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~  137 (195)
T 1x3s_A           68 IWDTAGQERFRTLTPSYYRGAQGVILVYDV----------TRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE  137 (195)
T ss_dssp             EEEECSSGGGCCSHHHHHTTCCEEEEEEET----------TCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC
T ss_pred             EEeCCCchhhhhhhHHHhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc
Confidence            699999999999999999999999999999          7888998888998888765445678999999999984321


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      +.                               .+++..+...             ..+.++++||+++.||+++|+++.
T Consensus       138 ~~-------------------------------~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~  173 (195)
T 1x3s_A          138 VD-------------------------------RNEGLKFARK-------------HSMLFIEASAKTCDGVQCAFEELV  173 (195)
T ss_dssp             SC-------------------------------HHHHHHHHHH-------------TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             cC-------------------------------HHHHHHHHHH-------------cCCEEEEecCCCCCCHHHHHHHHH
Confidence            11                               2233333221             235688999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.+.
T Consensus       174 ~~~~~~  179 (195)
T 1x3s_A          174 EKIIQT  179 (195)
T ss_dssp             HHHHTS
T ss_pred             HHHHhh
Confidence            988754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.76  E-value=4.7e-19  Score=129.31  Aligned_cols=114  Identities=17%  Similarity=0.172  Sum_probs=79.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.... ..+.|++|++||+|+..++
T Consensus        64 ~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~  132 (180)
T 2g6b_A           64 MWDTAGQERFRSVTHAYYRDAHALLLLYDV----------TNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHER  132 (180)
T ss_dssp             EEECCCC--------CCGGGCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCC
T ss_pred             EEeCCCcHHHHHHHHHHccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCccc
Confidence            699999999999999999999999999999          78888888888888876543 2578999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+...             ..+.++++||+++.||+++|+++.
T Consensus       133 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~  169 (180)
T 2g6b_A          133 VV------------------------------KREDGEKLAKE-------------YGLPFMETSAKTGLNVDLAFTAIA  169 (180)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHHH-------------cCCeEEEEeCCCCCCHHHHHHHHH
Confidence            11                              11223333211             125678999999999999999999


Q ss_pred             HHHHHhhh
Q psy12099        161 DIIQRMHL  168 (174)
Q Consensus       161 ~~i~~~~~  168 (174)
                      +.+.++..
T Consensus       170 ~~~~~~~~  177 (180)
T 2g6b_A          170 KELKRRSM  177 (180)
T ss_dssp             HHHHC---
T ss_pred             HHHHHHhc
Confidence            98876543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.76  E-value=1.5e-18  Score=129.35  Aligned_cols=114  Identities=20%  Similarity=0.162  Sum_probs=92.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.......+.|++||+||+|+..++
T Consensus        66 l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  135 (206)
T 2bov_A           66 ILDTAGQEDYAAIRDNYFRSGEGFLCVFSI----------TEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR  135 (206)
T ss_dssp             EEECCCTTCCHHHHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGC
T ss_pred             EEcCCChhhhHHHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccc
Confidence            699999999999999999999999999999          7889999999999988776545689999999999996542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.++...             ..+.++++||+++.||+++|.++.
T Consensus       136 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~g~gi~~l~~~l~  172 (206)
T 2bov_A          136 QV------------------------------SVEEAKNRAEQ-------------WNVNYVETSAKTRANVDKVFFDLM  172 (206)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             cc------------------------------cHHHHHHHHHH-------------hCCeEEEEeCCCCCCHHHHHHHHH
Confidence            11                              12233333321             125688999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.+..+.
T Consensus       173 ~~i~~~~  179 (206)
T 2bov_A          173 REIRARK  179 (206)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcc
Confidence            9988754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.76  E-value=1.2e-18  Score=129.82  Aligned_cols=117  Identities=16%  Similarity=0.110  Sum_probs=83.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCC--CCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRW--LRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~--~~~~~iilv~NK~Dl~~   78 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.....  ..+.|++||+||+|+..
T Consensus        77 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  146 (208)
T 2yc2_C           77 LLDTAGSDLYKEQISQYWNGVYYAILVFDV----------SSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP  146 (208)
T ss_dssp             EEETTTTHHHHHHHSTTCCCCCEEEEEEET----------TCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred             EEECCCcHHHHHHHHHHHhhCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence            699999999999999999999999999999          788999999999888876533  25789999999999976


Q ss_pred             -HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeeccccc-chhHHHHH
Q psy12099         79 -EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVD-TENIRRVF  156 (174)
Q Consensus        79 -~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d-~~~i~~~f  156 (174)
                       ++..                              ..+++.++...             ..+.++++||++ +.||+++|
T Consensus       147 ~~~~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~gi~~l~  183 (208)
T 2yc2_C          147 QRHQV------------------------------RLDMAQDWATT-------------NTLDFFDVSANPPGKDADAPF  183 (208)
T ss_dssp             ---CC------------------------------CHHHHHHHHHH-------------TTCEEEECCC-------CHHH
T ss_pred             hhccC------------------------------CHHHHHHHHHH-------------cCCEEEEeccCCCCcCHHHHH
Confidence             2211                              12233443221             226788999999 99999999


Q ss_pred             HHHHHHHHHhhhhh
Q psy12099        157 NDCRDIIQRMHLRQ  170 (174)
Q Consensus       157 ~~~~~~i~~~~~~~  170 (174)
                      +++.+.+.+...+.
T Consensus       184 ~~i~~~~~~~~~~~  197 (208)
T 2yc2_C          184 LSIATTFYRNYEDK  197 (208)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999888665443

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.76  E-value=1.3e-18  Score=126.84  Aligned_cols=117  Identities=12%  Similarity=0.090  Sum_probs=80.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC---CCCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR---WLRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~---~~~~~~iilv~NK~Dl~   77 (174)
                      +|||+|+++++..|..|+++++++|+|+|+          ++..++.....|+..+....   ...+.|++|++||+|+.
T Consensus        62 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  131 (182)
T 1ky3_A           62 VWDTAGQERFQSLGVAFYRGADCCVLVYDV----------TNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE  131 (182)
T ss_dssp             EECCC----------CCSTTCCEEEEEEET----------TCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred             EEECCCChHhhhhhHHHhhcCCEEEEEEEC----------CChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence            699999999999999999999999999999          78888888888888776542   23678999999999995


Q ss_pred             hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099         78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN  157 (174)
Q Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~  157 (174)
                      .....   .                          ..+++..+...            ...+.++++||+++.||+++|+
T Consensus       132 ~~~~~---v--------------------------~~~~~~~~~~~------------~~~~~~~~~Sa~~~~gi~~l~~  170 (182)
T 1ky3_A          132 ESKKI---V--------------------------SEKSAQELAKS------------LGDIPLFLTSAKNAINVDTAFE  170 (182)
T ss_dssp             GGGCC---S--------------------------CHHHHHHHHHH------------TTSCCEEEEBTTTTBSHHHHHH
T ss_pred             ccccc---C--------------------------CHHHHHHHHHh------------cCCCeEEEEecCCCCCHHHHHH
Confidence            43211   0                          11223333210            1235678999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy12099        158 DCRDIIQRMHL  168 (174)
Q Consensus       158 ~~~~~i~~~~~  168 (174)
                      ++.+.+++++.
T Consensus       171 ~l~~~~~~~~~  181 (182)
T 1ky3_A          171 EIARSALQQNQ  181 (182)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhhc
Confidence            99999987653

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.76  E-value=5.4e-19  Score=128.74  Aligned_cols=115  Identities=17%  Similarity=0.187  Sum_probs=86.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC-CCCCCc-EEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR-WLRTIS-VILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~-~~~~~~-iilv~NK~Dl~~   78 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.... ...+.| ++|++||+|+..
T Consensus        60 ~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~  129 (178)
T 2hxs_A           60 IWDIGGQTIGGKMLDKYIYGAQGVLLVYDI----------TNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH  129 (178)
T ss_dssp             EEECTTCCTTCTTHHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred             EEECCCCccccchhhHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence            699999999999999999999999999999          78888888888877765421 112344 899999999965


Q ss_pred             HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099         79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND  158 (174)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~  158 (174)
                      ++..                              ..+++..+...             ..+.++++||+++.||+++|++
T Consensus       130 ~~~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~  166 (178)
T 2hxs_A          130 MRTI------------------------------KPEKHLRFCQE-------------NGFSSHFVSAKTGDSVFLCFQK  166 (178)
T ss_dssp             GCSS------------------------------CHHHHHHHHHH-------------HTCEEEEECTTTCTTHHHHHHH
T ss_pred             cccc------------------------------CHHHHHHHHHH-------------cCCcEEEEeCCCCCCHHHHHHH
Confidence            3211                              12233333221             1256789999999999999999


Q ss_pred             HHHHHHHhhh
Q psy12099        159 CRDIIQRMHL  168 (174)
Q Consensus       159 ~~~~i~~~~~  168 (174)
                      +.+.+.+..+
T Consensus       167 l~~~~~~~~~  176 (178)
T 2hxs_A          167 VAAEILGIKL  176 (178)
T ss_dssp             HHHHHTTCCC
T ss_pred             HHHHHHhhhh
Confidence            9998876543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.76  E-value=2.4e-18  Score=127.37  Aligned_cols=114  Identities=18%  Similarity=0.176  Sum_probs=90.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.... ..+.|++|++||+|+...+
T Consensus        78 i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~----------~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~  146 (193)
T 2oil_A           78 IWDTAGLERYRAITSAYYRGAVGALLVFDL----------TKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAR  146 (193)
T ss_dssp             EEEESCCCTTCTTHHHHHTTCCEEEEEEET----------TCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGC
T ss_pred             EEeCCCchhhhhhhHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCccccc
Confidence            699999999999999999999999999999          78888888888888876543 3578999999999996542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..             ...+.++++||+++.||+++|+++.
T Consensus       147 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~l~  183 (193)
T 2oil_A          147 EV------------------------------PTEEARMFAE-------------NNGLLFLETSALDSTNVELAFETVL  183 (193)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------HTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11                              1223333321             1235788999999999999999999


Q ss_pred             HHHHHhhh
Q psy12099        161 DIIQRMHL  168 (174)
Q Consensus       161 ~~i~~~~~  168 (174)
                      +.++++..
T Consensus       184 ~~i~~~~~  191 (193)
T 2oil_A          184 KEIFAKVS  191 (193)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99987644

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.76  E-value=2.2e-18  Score=126.46  Aligned_cols=112  Identities=20%  Similarity=0.237  Sum_probs=89.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++..|..|+++++++|+|+|+          ++..++.....|+..+.... ..+.|++|++||+|+..++
T Consensus        63 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~  131 (186)
T 2bme_A           63 IWDTAGQERFRSVTRSYYRGAAGALLVYDI----------TSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADR  131 (186)
T ss_dssp             EEEECCSGGGHHHHHTTSTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGC
T ss_pred             EEeCCCcHHHHHHHHHHHhcCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccccccc
Confidence            699999999999999999999999999999          78889988888887765432 2578999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..             ...+.++++||+++.||+++|+++.
T Consensus       132 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~l~  168 (186)
T 2bme_A          132 EV------------------------------TFLEASRFAQ-------------ENELMFLETSALTGENVEEAFVQCA  168 (186)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------HTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHH-------------HcCCEEEEecCCCCCCHHHHHHHHH
Confidence            11                              1223333321             1236788999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.++++
T Consensus       169 ~~~~~~  174 (186)
T 2bme_A          169 RKILNK  174 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998865

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.76  E-value=2e-18  Score=131.03  Aligned_cols=113  Identities=17%  Similarity=0.186  Sum_probs=87.5

Q ss_pred             CeeCCCCch-hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRD-ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~-~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|++. ++.++..||++++++|+|||+          ++..+|.....|+..+.......++|++||+||+|+..+
T Consensus        91 ~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydv----------t~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~  160 (211)
T 2g3y_A           91 LLDMWENKGENEWLHDHCMQVGDAYLIVYSI----------TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC  160 (211)
T ss_dssp             EECCTTTTHHHHHHHHCCCCCCSEEEEEEET----------TCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGG
T ss_pred             EeecCCCcchhhhHHHHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcC
Confidence            599999988 677888999999999999999          899999999889888765433457999999999999653


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      +..    .                          .+++..+..             ...+.+++|||+++.||+++|+++
T Consensus       161 r~v----~--------------------------~~e~~~~a~-------------~~~~~~~e~SAk~g~~v~elf~~l  197 (211)
T 2g3y_A          161 REV----S--------------------------VSEGRACAV-------------VFDCKFIETSAAVQHNVKELFEGI  197 (211)
T ss_dssp             CCS----C--------------------------HHHHHHHHH-------------HHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             ceE----e--------------------------HHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHH
Confidence            211    1                          122222211             112567899999999999999999


Q ss_pred             HHHHHHh
Q psy12099        160 RDIIQRM  166 (174)
Q Consensus       160 ~~~i~~~  166 (174)
                      .+.+..+
T Consensus       198 ~~~i~~~  204 (211)
T 2g3y_A          198 VRQVRLR  204 (211)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988644

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.76  E-value=1.4e-18  Score=131.49  Aligned_cols=123  Identities=13%  Similarity=0.111  Sum_probs=89.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHH-HHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRE-SLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~-~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.. ...|+..+...  ..++|++||+||+|+..+
T Consensus        79 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~  146 (214)
T 3q3j_B           79 LWDTSGSPYYDNVRPLCYSDSDAVLLCFDI----------SRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTD  146 (214)
T ss_dssp             EEEECCSGGGTTTGGGGCTTCSEEEEEEET----------TCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGC
T ss_pred             EEECCCCHhHHHHHHHHcCCCeEEEEEEEC----------cCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccc
Confidence            699999999999999999999999999999          88999998 46676666544  257999999999999764


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcce-eeeecccccchh-HHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYC-YPHFTCAVDTEN-IRRVFN  157 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~-~~~~tsA~d~~~-i~~~f~  157 (174)
                      ...  ...+.   .....             .-..+++..+...             ..+ .+++|||+++.| |+++|+
T Consensus       147 ~~~--~~~~~---~~~~~-------------~v~~~~~~~~~~~-------------~~~~~~~e~SA~~g~g~v~~lf~  195 (214)
T 3q3j_B          147 LST--LMELS---HQKQA-------------PISYEQGCAIAKQ-------------LGAEIYLEGSAFTSEKSIHSIFR  195 (214)
T ss_dssp             HHH--HHHHH---HTTCC-------------CCCHHHHHHHHHH-------------HTCSEEEECCTTTCHHHHHHHHH
T ss_pred             hhh--hhhhc---ccccC-------------ccCHHHHHHHHHH-------------cCCCEEEEeccCCCcccHHHHHH
Confidence            221  00000   00000             0123344444321             224 678999999998 999999


Q ss_pred             HHHHHHHHh
Q psy12099        158 DCRDIIQRM  166 (174)
Q Consensus       158 ~~~~~i~~~  166 (174)
                      .+.+.++.+
T Consensus       196 ~l~~~~~~~  204 (214)
T 3q3j_B          196 TASMLCLNK  204 (214)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHhcc
Confidence            999988755

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.76  E-value=2e-18  Score=129.68  Aligned_cols=113  Identities=19%  Similarity=0.214  Sum_probs=89.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.... ..+.|++||+||+|+..++
T Consensus        79 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~----------~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~  147 (201)
T 2ew1_A           79 IWDTAGQERFRSITQSYYRSANALILTYDI----------TCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERR  147 (201)
T ss_dssp             EEEECCSGGGHHHHGGGSTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGC
T ss_pred             EEECCCcHHHHHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccc
Confidence            699999999999999999999999999999          78889988888888775432 3578999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+...             ..+.++++||+++.||+++|+++.
T Consensus       148 ~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~g~gv~~l~~~l~  184 (201)
T 2ew1_A          148 EV------------------------------SQQRAEEFSEA-------------QDMYYLETSAKESDNVEKLFLDLA  184 (201)
T ss_dssp             SS------------------------------CHHHHHHHHHH-------------HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHHH-------------cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11                              11223333211             225678999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.+..+.
T Consensus       185 ~~i~~~~  191 (201)
T 2ew1_A          185 CRLISEA  191 (201)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.76  E-value=1.8e-18  Score=124.08  Aligned_cols=112  Identities=16%  Similarity=0.159  Sum_probs=89.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.......+.|+++++||+|+..++
T Consensus        55 l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  124 (167)
T 1kao_A           55 ILDTAGTEQFASMRDLYIKNGQGFILVYSL----------VNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESER  124 (167)
T ss_dssp             EEECCCTTCCHHHHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGC
T ss_pred             EEECCCchhhHHHHHHHhccCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccc
Confidence            699999999999999999999999999999          7888999999999888776555689999999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+...             ..+.++++||+++.||+++|+++.
T Consensus       125 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~  161 (167)
T 1kao_A          125 EV------------------------------SSSEGRALAEE-------------WGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             cC------------------------------CHHHHHHHHHH-------------hCCCEEEecCCCCcCHHHHHHHHH
Confidence            11                              01223333211             124678999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.+.+
T Consensus       162 ~~~~~  166 (167)
T 1kao_A          162 RQMNY  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            87753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.75  E-value=2e-18  Score=125.71  Aligned_cols=115  Identities=20%  Similarity=0.184  Sum_probs=91.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++.++.+|..|+++++++|+|+|+          ++..++.....|+..+...  ..+.|++||+||+|+..++
T Consensus        62 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~  129 (181)
T 3tw8_B           62 IWDTAGQERFRTITSTYYRGTHGVIVVYDV----------TSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERK  129 (181)
T ss_dssp             EEEETTGGGCSSCCGGGGTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGC
T ss_pred             EEcCCCchhhhhhHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhc
Confidence            699999999999999999999999999999          7889999988888887654  3578999999999987643


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.+..+...             ..+.++++||+++.||+++|+++.
T Consensus       130 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~  166 (181)
T 3tw8_B          130 VV------------------------------ETEDAYKFAGQ-------------MGIQLFETSAKENVNVEEMFNCIT  166 (181)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHHH-------------cCCeEEEEECCCCCCHHHHHHHHH
Confidence            21                              01222332211             124678999999999999999999


Q ss_pred             HHHHHhhhhh
Q psy12099        161 DIIQRMHLRQ  170 (174)
Q Consensus       161 ~~i~~~~~~~  170 (174)
                      +.+.+...+.
T Consensus       167 ~~~~~~~~~~  176 (181)
T 3tw8_B          167 ELVLRAKKDN  176 (181)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhhhh
Confidence            9998765544

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.75  E-value=1.6e-18  Score=126.03  Aligned_cols=111  Identities=19%  Similarity=0.168  Sum_probs=87.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++..|..|+++++++|+|+|+          ++..++.....|+..+.... ..+.|++|++||+|+..++
T Consensus        68 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~  136 (179)
T 1z0f_A           68 IWDTAGQERFRAVTRSYYRGAAGALMVYDI----------TRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQR  136 (179)
T ss_dssp             EEECTTGGGTCHHHHHHHHTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGC
T ss_pred             EEECCCChHhhhhHHHHhccCCEEEEEEeC----------cCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccccccc
Confidence            699999999999999999999999999999          78888888888888775542 3578999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.++...             ..+.++++||+++.||+++|+++.
T Consensus       137 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~  173 (179)
T 1z0f_A          137 DV------------------------------TYEEAKQFAEE-------------NGLLFLEASAKTGENVEDAFLEAA  173 (179)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHHH-------------cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11                              12333443221             235788999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.+++
T Consensus       174 ~~i~~  178 (179)
T 1z0f_A          174 KKIYQ  178 (179)
T ss_dssp             HHHC-
T ss_pred             HHHhh
Confidence            88754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.75  E-value=2.2e-18  Score=124.97  Aligned_cols=114  Identities=15%  Similarity=0.133  Sum_probs=82.4

Q ss_pred             CeeCCCCch--hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRD--ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~--~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +|||+|++.  ++.++..|+++++++|+|+|+          ++..++.....|+..+.......+.|++|++||+|+..
T Consensus        56 ~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~  125 (175)
T 2nzj_A           56 VVDTWEAEKLDKSWSQESCLQGGSAYVIVYSI----------ADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR  125 (175)
T ss_dssp             EECCC-------CHHHHHTTTSCSEEEEEEET----------TCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred             EEecCCCCccchhhhHHhhcccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence            699999998  677888999999999999999          88999999989988887654456799999999999965


Q ss_pred             HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099         79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND  158 (174)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~  158 (174)
                      ++..                              ..+++..+...             ..+.++++||+++.||+++|++
T Consensus       126 ~~~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~g~gi~~l~~~  162 (175)
T 2nzj_A          126 CREV------------------------------SVEEGRACAVV-------------FDCKFIETSATLQHNVAELFEG  162 (175)
T ss_dssp             TCCS------------------------------CHHHHHHHHHH-------------HTSEEEECBTTTTBSHHHHHHH
T ss_pred             cccc------------------------------CHHHHHHHHHH-------------cCCeEEEEecCCCCCHHHHHHH
Confidence            3211                              01223332211             1256789999999999999999


Q ss_pred             HHHHHHHhh
Q psy12099        159 CRDIIQRMH  167 (174)
Q Consensus       159 ~~~~i~~~~  167 (174)
                      +.+.+..+.
T Consensus       163 l~~~~~~~~  171 (175)
T 2nzj_A          163 VVRQLRLRR  171 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999987654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.75  E-value=1.3e-18  Score=131.18  Aligned_cols=113  Identities=17%  Similarity=0.196  Sum_probs=90.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.......+.|++||+||+|+..++
T Consensus        88 l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~----------~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~  157 (217)
T 2f7s_A           88 LWDTAGQERFRSLTTAFFRDAMGFLLMFDL----------TSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR  157 (217)
T ss_dssp             EEEEESHHHHHHHHHHHHTTCCEEEEEEET----------TCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGC
T ss_pred             EEECCCcHhHHhHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccccc
Confidence            699999999999999999999999999999          7889999888888887665444689999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.++...             ..+.++++||+++.||+++|+++.
T Consensus       158 ~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~g~gi~~l~~~l~  194 (217)
T 2f7s_A          158 EV------------------------------NERQARELADK-------------YGIPYFETSAATGQNVEKAVETLL  194 (217)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------TTCCEEEEBTTTTBTHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHHH-------------CCCcEEEEECCCCCCHHHHHHHHH
Confidence            11                              01223333211             225678999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.++
T Consensus       195 ~~i~~~  200 (217)
T 2f7s_A          195 DLIMKR  200 (217)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998765

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.75  E-value=2.6e-18  Score=123.76  Aligned_cols=109  Identities=17%  Similarity=0.163  Sum_probs=86.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++..|..|+++++++|+|+|+          ++..++.....|+..+.... .++.|++|++||+|+..++
T Consensus        59 ~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~  127 (170)
T 1r2q_A           59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDI----------TNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKR  127 (170)
T ss_dssp             EEEECCSGGGGGGHHHHHTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGC
T ss_pred             EEeCCCcHHhhhhhHHhccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCcccc
Confidence            699999999999999999999999999999          78889999888888876543 3578999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.++..             ...+.++++||+++.||+++|+++.
T Consensus       128 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~g~gi~~l~~~i~  164 (170)
T 1r2q_A          128 AV------------------------------DFQEAQSYAD-------------DNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------HTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHH-------------HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            11                              1223333321             1235788999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       165 ~~~  167 (170)
T 1r2q_A          165 KKL  167 (170)
T ss_dssp             HTS
T ss_pred             HHH
Confidence            754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.75  E-value=1.4e-18  Score=125.06  Aligned_cols=112  Identities=20%  Similarity=0.182  Sum_probs=88.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.......+.|+++++||+|+..++
T Consensus        55 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  124 (167)
T 1c1y_A           55 ILDTAGTEQFTAMRDLYMKNGQGFALVYSI----------TAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER  124 (167)
T ss_dssp             EEEECSSCSSTTHHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGC
T ss_pred             EEECCChHHHHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccc
Confidence            699999999999999999999999999999          7888999888888888765445689999999999997542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+...            ...+.++++||+++.||+++|+++.
T Consensus       125 ~~------------------------------~~~~~~~~~~~------------~~~~~~~~~Sa~~~~gi~~l~~~l~  162 (167)
T 1c1y_A          125 VV------------------------------GKEQGQNLARQ------------WCNCAFLESSAKSKINVNEIFYDLV  162 (167)
T ss_dssp             CS------------------------------CHHHHHHHHHH------------TTSCEEEECBTTTTBSHHHHHHHHH
T ss_pred             cC------------------------------CHHHHHHHHHH------------ccCCcEEEecCCCCCCHHHHHHHHH
Confidence            11                              11223333211            0135688999999999999999998


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.+.
T Consensus       163 ~~i~  166 (167)
T 1c1y_A          163 RQIN  166 (167)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8763

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.75  E-value=2.2e-18  Score=128.83  Aligned_cols=113  Identities=20%  Similarity=0.221  Sum_probs=90.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.... ..+.|++||+||+|+..++
T Consensus        78 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~  146 (200)
T 2o52_A           78 IWDTAGQERFRSVTRSYYRGAAGALLVYDI----------TSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPER  146 (200)
T ss_dssp             EECCTTHHHHSCCCHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGC
T ss_pred             EEcCCCcHhHHHHHHHHhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccc
Confidence            699999999999999999999999999999          78889998888888876543 2578999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..             ...+.++++||+++.||+++|+++.
T Consensus       147 ~v------------------------------~~~~~~~~~~-------------~~~~~~~~~SA~~g~gi~~l~~~l~  183 (200)
T 2o52_A          147 EV------------------------------TFLEASRFAQ-------------ENELMFLETSALTGENVEEAFLKCA  183 (200)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------HTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11                              1223333321             1236788999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.++++.
T Consensus       184 ~~i~~~~  190 (200)
T 2o52_A          184 RTILNKI  190 (200)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988653

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.75  E-value=3.2e-18  Score=126.59  Aligned_cols=113  Identities=21%  Similarity=0.174  Sum_probs=89.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.... ..+.|++||+||+|+..++
T Consensus        69 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~  137 (196)
T 3tkl_A           69 IWDTAGQERFRTITSSYYRGAHGIIVVYDV----------TDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKK  137 (196)
T ss_dssp             EEEECCSGGGCTTHHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTC
T ss_pred             EEECCCcHhhhhhHHHHHhhCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccccccc
Confidence            699999999999999999999999999999          78889988888888875543 3578999999999986543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.+..+..             ...+.++++||+++.||+++|+++.
T Consensus       138 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~g~gv~~l~~~l~  174 (196)
T 3tkl_A          138 VV------------------------------DYTTAKEFAD-------------SLGIPFLETSAKNATNVEQSFMTMA  174 (196)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------HTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHH-------------HcCCcEEEEeCCCCCCHHHHHHHHH
Confidence            11                              1122222211             1225688999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.+.++.
T Consensus       175 ~~i~~~~  181 (196)
T 3tkl_A          175 AEIKKRM  181 (196)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9988653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.75  E-value=4.1e-18  Score=126.87  Aligned_cols=125  Identities=13%  Similarity=0.136  Sum_probs=90.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.+.. .|+..+...  ..+.|++||+||+|+..+
T Consensus        72 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~  139 (201)
T 2q3h_A           72 LCDTAGQDEFDKLRPLCYTNTDIFLLCFSV----------VSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLRED  139 (201)
T ss_dssp             EEECCCSTTCSSSGGGGGTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGC
T ss_pred             EEECCCCHHHHHHhHhhcCCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhc
Confidence            699999999999999999999999999999          7889999887 677766543  247899999999999764


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...  ...+.+.   ...             ....+++..+...     .       ..+.++++||+++.||+++|+++
T Consensus       140 ~~~--~~~~~~~---~~~-------------~v~~~~~~~~~~~-----~-------~~~~~~~~Sa~~g~gi~~l~~~l  189 (201)
T 2q3h_A          140 VKV--LIELDKC---KEK-------------PVPEEAAKLLAEE-----I-------KAASYIECSALTQKNLKEVFDAA  189 (201)
T ss_dssp             HHH--HHHHHTT---TCC-------------CCCHHHHHHHHHH-----H-------TCSEEEECCTTTCTTHHHHHHHH
T ss_pred             hhh--hhhhccc---ccc-------------cCCHHHHHHHHHh-----c-------CCcEEEEEecCCCCCHHHHHHHH
Confidence            311  0111100   000             0113334444221     0       11367899999999999999999


Q ss_pred             HHHHHHhh
Q psy12099        160 RDIIQRMH  167 (174)
Q Consensus       160 ~~~i~~~~  167 (174)
                      .+.+++..
T Consensus       190 ~~~~~~~~  197 (201)
T 2q3h_A          190 IVAGIQYS  197 (201)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhccc
Confidence            99988654

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.75  E-value=2.5e-18  Score=126.89  Aligned_cols=117  Identities=15%  Similarity=0.104  Sum_probs=79.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.+...|+..+.......+.|++||+||+|+....
T Consensus        73 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~  142 (190)
T 3con_A           73 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAI----------NNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRT  142 (190)
T ss_dssp             EEECCC-----------CTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC
T ss_pred             EEECCChHHHHHHHHHhhCcCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCccc
Confidence            699999999999999999999999999999          7888888888888877654434578999999999986521


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                               .+++.++...             ..+.++++||+++.|++++|+++.
T Consensus       143 ~~-------------------------------~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~  178 (190)
T 3con_A          143 VD-------------------------------TKQAHELAKS-------------YGIPFIETSAKTRQGVEDAFYTLV  178 (190)
T ss_dssp             SC-------------------------------HHHHHHHHHH-------------HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             CC-------------------------------HHHHHHHHHH-------------cCCeEEEEeCCCCCCHHHHHHHHH
Confidence            11                               1223333211             124678999999999999999999


Q ss_pred             HHHHHhhhhhc
Q psy12099        161 DIIQRMHLRQY  171 (174)
Q Consensus       161 ~~i~~~~~~~~  171 (174)
                      +.+.+...++.
T Consensus       179 ~~~~~~~~~~l  189 (190)
T 3con_A          179 REIRQYRMKKL  189 (190)
T ss_dssp             HHHHHHC----
T ss_pred             HHHHHHHHhhc
Confidence            99987765543

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.75  E-value=2.7e-18  Score=126.94  Aligned_cols=112  Identities=21%  Similarity=0.272  Sum_probs=86.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++++     |+++++++|+|||+          ++..++.....|+..+.......+.|++|++||+|+..+.
T Consensus        71 i~Dt~G~~~~~-----~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  135 (184)
T 3ihw_A           71 IRDEGGPPELQ-----FAAWVDAVVFVFSL----------EDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAAN  135 (184)
T ss_dssp             EEECSSSCCHH-----HHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTB
T ss_pred             EEECCCChhhh-----eecCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc
Confidence            59999999988     88999999999999          8999999999999998776545678999999999985321


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..    .+                        ..+++..+...            ...+.++++||+++.||+++|+++.
T Consensus       136 ~~----~v------------------------~~~~~~~~~~~------------~~~~~~~e~Sa~~~~gv~~lf~~l~  175 (184)
T 3ihw_A          136 PR----VI------------------------DDSRARKLSTD------------LKRCTYYETCATYGLNVERVFQDVA  175 (184)
T ss_dssp             CC----CS------------------------CHHHHHHHHHH------------TTTCEEEEEBTTTTBTHHHHHHHHH
T ss_pred             cc----cc------------------------CHHHHHHHHHH------------cCCCeEEEecCCCCCCHHHHHHHHH
Confidence            11    00                        12233333221            1125678999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.++++.
T Consensus       176 ~~i~~~~  182 (184)
T 3ihw_A          176 QKVVALR  182 (184)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9988764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.75  E-value=3.7e-18  Score=124.19  Aligned_cols=113  Identities=15%  Similarity=0.160  Sum_probs=87.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC---CCCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR---WLRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~---~~~~~~iilv~NK~Dl~   77 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+....   ...+.|+++++||+|+.
T Consensus        60 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~  129 (177)
T 1wms_A           60 IWDTAGQERFRSLRTPFYRGSDCCLLTFSV----------DDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS  129 (177)
T ss_dssp             EEECCCCGGGHHHHGGGGTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred             EEeCCCchhhhhhHHHHHhcCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence            699999999999999999999999999999          78888888888877765432   23578999999999986


Q ss_pred             hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099         78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN  157 (174)
Q Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~  157 (174)
                      ....                               ..+++.++...            ...+.++++||+++.||+++|+
T Consensus       130 ~~~~-------------------------------~~~~~~~~~~~------------~~~~~~~~~Sa~~~~gi~~l~~  166 (177)
T 1wms_A          130 ERQV-------------------------------STEEAQAWCRD------------NGDYPYFETSAKDATNVAAAFE  166 (177)
T ss_dssp             SCSS-------------------------------CHHHHHHHHHH------------TTCCCEEECCTTTCTTHHHHHH
T ss_pred             cccc-------------------------------CHHHHHHHHHh------------cCCceEEEEeCCCCCCHHHHHH
Confidence            3211                               12233333221            1235678999999999999999


Q ss_pred             HHHHHHHHh
Q psy12099        158 DCRDIIQRM  166 (174)
Q Consensus       158 ~~~~~i~~~  166 (174)
                      ++.+.++++
T Consensus       167 ~l~~~~~~~  175 (177)
T 1wms_A          167 EAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHhh
Confidence            999988753

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.74  E-value=1.3e-18  Score=128.90  Aligned_cols=112  Identities=18%  Similarity=0.167  Sum_probs=89.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|++.++.+|..|+++++++|+|+|+          ++..+++....|+..+... ...+.|++||+||+|+..++
T Consensus        76 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~  144 (191)
T 3dz8_A           76 IWDTAGQERYRTITTAYYRGAMGFILMYDI----------TNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEER  144 (191)
T ss_dssp             EECHHHHHHCHHHHHHHHTTCCEEEEEEET----------TCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGC
T ss_pred             EEeCCChHHHHHHHHHHHccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCcccc
Confidence            699999999999999999999999999999          7889998888888887553 34679999999999996543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+...             ..+.++++||+++.||+++|+++.
T Consensus       145 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~  181 (191)
T 3dz8_A          145 VV------------------------------PTEKGQLLAEQ-------------LGFDFFEASAKENISVRQAFERLV  181 (191)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHHH-------------cCCeEEEEECCCCCCHHHHHHHHH
Confidence            21                              11223333211             225688999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.++
T Consensus       182 ~~i~~~  187 (191)
T 3dz8_A          182 DAICDK  187 (191)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998765

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.74  E-value=2.1e-18  Score=127.71  Aligned_cols=111  Identities=17%  Similarity=0.190  Sum_probs=83.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC--CCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR--WLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~--~~~~~~iilv~NK~Dl~~   78 (174)
                      ||||+|+++++.+ ..|+++++++|+|||+          ++..++.....|+..+....  ...+.|++|++||+|+..
T Consensus        73 i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  141 (187)
T 3c5c_A           73 VMDTADLDTPRNC-ERYLNWAHAFLVVYSV----------DSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ  141 (187)
T ss_dssp             EEECCC---CCCT-HHHHTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred             EEECCCCCcchhH-HHHHhhCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence            6999999999885 7899999999999999          78999999988988876542  125789999999999965


Q ss_pred             HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeeccc-ccchhHHHHHH
Q psy12099         79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCA-VDTENIRRVFN  157 (174)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA-~d~~~i~~~f~  157 (174)
                      ++..                              ..+++.++...             ..+.++++|| +++.||+++|+
T Consensus       142 ~~~v------------------------------~~~~~~~~~~~-------------~~~~~~e~Sa~~~g~gv~~lf~  178 (187)
T 3c5c_A          142 YRQV------------------------------TKAEGVALAGR-------------FGCLFFEVSACLDFEHVQHVFH  178 (187)
T ss_dssp             GCSS------------------------------CHHHHHHHHHH-------------HTCEEEECCSSSCSHHHHHHHH
T ss_pred             cCcc------------------------------CHHHHHHHHHH-------------cCCcEEEEeecCccccHHHHHH
Confidence            3211                              12334444321             1256789999 89999999999


Q ss_pred             HHHHHHHH
Q psy12099        158 DCRDIIQR  165 (174)
Q Consensus       158 ~~~~~i~~  165 (174)
                      .+.+.+.+
T Consensus       179 ~l~~~i~~  186 (187)
T 3c5c_A          179 EAVREARR  186 (187)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            99988753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.74  E-value=3.9e-18  Score=125.96  Aligned_cols=112  Identities=21%  Similarity=0.192  Sum_probs=88.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+... ...+.|++||+||+|+..++
T Consensus        75 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~  143 (189)
T 2gf9_A           75 IWDTAGQERYRTITTAYYRGAMGFLLMYDI----------ANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDER  143 (189)
T ss_dssp             EEECCSCCSSCCSGGGGGTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGC
T ss_pred             EEeCCCcHHHhhhHHHhccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccccccc
Confidence            699999999999999999999999999999          7888888888888887554 24578999999999996542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.++...             ..+.++++||+++.||+++|+++.
T Consensus       144 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~g~gi~~l~~~l~  180 (189)
T 2gf9_A          144 VV------------------------------PAEDGRRLADD-------------LGFEFFEASAKENINVKQVFERLV  180 (189)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             CC------------------------------CHHHHHHHHHH-------------cCCeEEEEECCCCCCHHHHHHHHH
Confidence            11                              01223333211             125688999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.++
T Consensus       181 ~~i~~~  186 (189)
T 2gf9_A          181 DVICEK  186 (189)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.74  E-value=4.7e-18  Score=126.18  Aligned_cols=113  Identities=17%  Similarity=0.117  Sum_probs=87.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+... ...+.|++||+||+|+..++
T Consensus        79 l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~----------~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~  147 (192)
T 2il1_A           79 IWDTAGQERFNSITSAYYRSAKGIILVYDI----------TKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDR  147 (192)
T ss_dssp             EEEECCSGGGHHHHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGC
T ss_pred             EEeCCCcHHHHHHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccccccc
Confidence            699999999999999999999999999999          7888888887777665433 34578999999999996542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..            ....+.++++||+++.||+++|+++.
T Consensus       148 ~v------------------------------~~~~~~~~~~------------~~~~~~~~~~SA~~g~gi~~l~~~l~  185 (192)
T 2il1_A          148 EI------------------------------TRQQGEKFAQ------------QITGMRFCEASAKDNFNVDEIFLKLV  185 (192)
T ss_dssp             CS------------------------------CHHHHHHHHH------------TSTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHH------------hcCCCeEEEEeCCCCCCHHHHHHHHH
Confidence            11                              0122222211            01235678999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.++++
T Consensus       186 ~~i~~~  191 (192)
T 2il1_A          186 DDILKK  191 (192)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            988754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.74  E-value=2.8e-18  Score=126.76  Aligned_cols=111  Identities=19%  Similarity=0.189  Sum_probs=85.5

Q ss_pred             CeeCCCCchhh-hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDER-RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r-~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+|+++++ .+|..|+++++++|+|+|+          ++..++.....|+..+.......+.|++|++||+|+..+
T Consensus        73 l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  142 (189)
T 1z06_A           73 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDM----------TNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA  142 (189)
T ss_dssp             EEECCCSHHHHTTTHHHHHTTCCEEEEEEET----------TCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred             EEECCCchhhhhhhhHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            69999999999 8999999999999999999          788999998899888876654567999999999999654


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc---hhHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT---ENIRRVF  156 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~---~~i~~~f  156 (174)
                      +..                              ..+.+..+..             ...+.++++||+++   .||+++|
T Consensus       143 ~~v------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~~~~i~~l~  179 (189)
T 1z06_A          143 IQV------------------------------PTDLAQKFAD-------------THSMPLFETSAKNPNDNDHVEAIF  179 (189)
T ss_dssp             CCS------------------------------CHHHHHHHHH-------------HTTCCEEECCSSSGGGGSCHHHHH
T ss_pred             cee------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCcCCcccCHHHHH
Confidence            211                              0122333321             12256789999999   9999999


Q ss_pred             HHHHHHHH
Q psy12099        157 NDCRDIIQ  164 (174)
Q Consensus       157 ~~~~~~i~  164 (174)
                      .++.+.+.
T Consensus       180 ~~l~~~i~  187 (189)
T 1z06_A          180 MTLAHKLK  187 (189)
T ss_dssp             HHHC----
T ss_pred             HHHHHHHh
Confidence            99988764

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.74  E-value=4.7e-18  Score=127.12  Aligned_cols=112  Identities=22%  Similarity=0.168  Sum_probs=89.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.... ..+.|++||+||+|+..++
T Consensus        61 l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~  129 (206)
T 2bcg_Y           61 IWDTAGQERFRTITSSYYRGSHGIIIVYDV----------TDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKR  129 (206)
T ss_dssp             EECCTTTTTTTCCCGGGGTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTC
T ss_pred             EEeCCChHHHHHHHHHhccCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccc
Confidence            699999999999999999999999999999          78889999888888875543 3578999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.+..+..             ...+.++++||+++.||+++|.++.
T Consensus       130 ~~------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~g~gi~~l~~~l~  166 (206)
T 2bcg_Y          130 VV------------------------------EYDVAKEFAD-------------ANKMPFLETSALDSTNVEDAFLTMA  166 (206)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------HTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHH-------------HcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            11                              1222333321             1225678999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.+.
T Consensus       167 ~~i~~~  172 (206)
T 2bcg_Y          167 RQIKES  172 (206)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988765

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.74  E-value=2.9e-18  Score=127.47  Aligned_cols=113  Identities=19%  Similarity=0.186  Sum_probs=90.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++. +.+|..|+++++++|+|+|+          ++.+++.....|+..+.......+.|++||+||+|+..++
T Consensus        80 l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~  148 (196)
T 2atv_A           80 ILDTAGQED-TIQREGHMRWGEGFVLVYDI----------TDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR  148 (196)
T ss_dssp             EEECCCCCC-CHHHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGC
T ss_pred             EEECCCCCc-ccchhhhhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccccc
Confidence            699999999 88999999999999999999          7888999988888887765445688999999999997642


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccch-hHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTE-NIRRVFNDC  159 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~-~i~~~f~~~  159 (174)
                      ..                              ..+++..+...             ..+.++++||+++. ||+++|+++
T Consensus       149 ~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~g~~gi~~l~~~l  185 (196)
T 2atv_A          149 QV------------------------------STEEGEKLATE-------------LACAFYECSACTGEGNITEIFYEL  185 (196)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHHH-------------hCCeEEEECCCcCCcCHHHHHHHH
Confidence            11                              12233333221             12578899999999 999999999


Q ss_pred             HHHHHHhh
Q psy12099        160 RDIIQRMH  167 (174)
Q Consensus       160 ~~~i~~~~  167 (174)
                      .+.++++.
T Consensus       186 ~~~i~~~~  193 (196)
T 2atv_A          186 CREVRRRR  193 (196)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhc
Confidence            99998654

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.74  E-value=5e-19  Score=133.52  Aligned_cols=112  Identities=11%  Similarity=0.026  Sum_probs=73.4

Q ss_pred             eCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHH---HHHHcCCC-CCCCcEEEEEeCC-chh
Q psy12099          3 DVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLF---KSIWNNRW-LRTISVILFLNKQ-DLL   77 (174)
Q Consensus         3 D~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~---~~i~~~~~-~~~~~iilv~NK~-Dl~   77 (174)
                      |.|||++.|.+|.+||++++++|||+|.          ++..+++ +.+.+   ..++++.. +.++|++|++||+ |++
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDS----------sD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp  176 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANA----------EAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV  176 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEEC----------BTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEecc----------ccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence            5789999999999999999999999999          4555543 54544   44555543 5789999999995 775


Q ss_pred             hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099         78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN  157 (174)
Q Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~  157 (174)
                      ... .  ...+.+.                                  ..++.   . ++.++++.|||++|+++.+.++
T Consensus       177 ~Am-s--~~EI~e~----------------------------------L~L~~---l-~R~W~Iq~csA~TGeGL~EGLd  215 (227)
T 3l82_B          177 KRM-P--CFYLAHE----------------------------------LHLNL---L-NHPWLVQDTEAETLTGFLNGIE  215 (227)
T ss_dssp             CBC-C--HHHHHHH----------------------------------TTGGG---G-CSCEEEEEEETTTCTTHHHHHH
T ss_pred             CCC-C--HHHHHHH----------------------------------cCCcC---C-CCCEEEEEeECCCCcCHHHHHH
Confidence            432 1  1111111                                  12222   1 3689999999999999999999


Q ss_pred             HHHHHHHHh
Q psy12099        158 DCRDIIQRM  166 (174)
Q Consensus       158 ~~~~~i~~~  166 (174)
                      |+.+.+.++
T Consensus       216 WL~~~l~~k  224 (227)
T 3l82_B          216 WILEEVESK  224 (227)
T ss_dssp             HHTTTTTTC
T ss_pred             HHHHHHHhh
Confidence            998877544

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.74  E-value=3.3e-18  Score=124.85  Aligned_cols=112  Identities=17%  Similarity=0.215  Sum_probs=88.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++..|..|+++++++|+|+|+          ++..++.....|+..+.... ..+.|++|++||+|+..++
T Consensus        65 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~  133 (181)
T 2efe_B           65 IWDTAGQERYHSLAPMYYRGAAAAIIVFDV----------TNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDAR  133 (181)
T ss_dssp             EEECCCSGGGGGGTHHHHTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTC
T ss_pred             EEeCCCChhhhhhhHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccc
Confidence            699999999999999999999999999999          78889999989988876643 3578999999999996432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.++...             ..+.++++||+++.||+++|+++.
T Consensus       134 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~g~gi~~l~~~l~  170 (181)
T 2efe_B          134 KV------------------------------TAEDAQTYAQE-------------NGLFFMETSAKTATNVKEIFYEIA  170 (181)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------TTCEEEECCSSSCTTHHHHHHHHH
T ss_pred             cC------------------------------CHHHHHHHHHH-------------cCCEEEEEECCCCCCHHHHHHHHH
Confidence            11                              12233333221             235688999999999999999998


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+...
T Consensus       171 ~~~~~~  176 (181)
T 2efe_B          171 RRLPRV  176 (181)
T ss_dssp             HTCC--
T ss_pred             HHHHhc
Confidence            876543

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.74  E-value=4.3e-18  Score=126.97  Aligned_cols=113  Identities=18%  Similarity=0.165  Sum_probs=88.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+... ...+.|++||+||+|+..++
T Consensus        61 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~  129 (203)
T 1zbd_A           61 IWDTAGLERYRTITTAYYRGAMGFILMYDI----------TNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDER  129 (203)
T ss_dssp             EEEECCSGGGHHHHHTTGGGCSEEEEEEET----------TCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSC
T ss_pred             EEECCCchhhcchHHHhhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCccc
Confidence            699999999999999999999999999999          7888998888888887554 24578999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.+..+...             ..+.++++||+++.||+++|+++.
T Consensus       130 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~  166 (203)
T 1zbd_A          130 VV------------------------------SSERGRQLADH-------------LGFEFFEASAKDNINVKQTFERLV  166 (203)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHHH-------------CCCeEEEEECCCCCCHHHHHHHHH
Confidence            11                              11223333211             124678999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.+.++.
T Consensus       167 ~~i~~~~  173 (203)
T 1zbd_A          167 DVICEKM  173 (203)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.74  E-value=2.1e-18  Score=131.04  Aligned_cols=112  Identities=18%  Similarity=0.224  Sum_probs=85.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.... ..+.|++||+||+|+..++
T Consensus        66 i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~----------~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~  134 (223)
T 3cpj_B           66 IWDTAGQERYRAITSAYYRGAVGALIVYDI----------SKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLR  134 (223)
T ss_dssp             EECCTTTTTTTCCCGGGTTTCCEEEEEEC-----------CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGC
T ss_pred             EEECCCccchhhhHHHHhccCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccc
Confidence            699999999999999999999999999999          78899999888888876542 3578999999999997532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+...             ..+.++++||+++.||+++|+++.
T Consensus       135 ~v------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~  171 (223)
T 3cpj_B          135 AV------------------------------PTEESKTFAQE-------------NQLLFTETSALNSENVDKAFEELI  171 (223)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------TTCEEEECCCC-CCCHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHHH-------------cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11                              11223333211             235778999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.++
T Consensus       172 ~~i~~~  177 (223)
T 3cpj_B          172 NTIYQK  177 (223)
T ss_dssp             HHHTTC
T ss_pred             HHHHHH
Confidence            988754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.74  E-value=2.1e-18  Score=127.94  Aligned_cols=114  Identities=16%  Similarity=0.165  Sum_probs=86.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.+. ..|...+...  ..+.|++||+||+|+..+
T Consensus        75 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~  142 (194)
T 3reg_A           75 LWDTAGQEEYDRLRPLSYADSDVVLLCFAV----------NNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKD  142 (194)
T ss_dssp             EEEECCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCT
T ss_pred             EEECCCcHHHHHHhHhhccCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccC
Confidence            699999999999999999999999999999          889999887 4555554432  357899999999999753


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCccee-eeecccccchhHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCY-PHFTCAVDTENIRRVFND  158 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~-~~~tsA~d~~~i~~~f~~  158 (174)
                      ...  ..                          ..+++..+...             ..+. ++++||+++.||+++|++
T Consensus       143 ~~~--~~--------------------------~~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~  181 (194)
T 3reg_A          143 GSD--DV--------------------------TKQEGDDLCQK-------------LGCVAYIEASSVAKIGLNEVFEK  181 (194)
T ss_dssp             TTT--CC--------------------------CHHHHHHHHHH-------------HTCSCEEECBTTTTBSHHHHHHH
T ss_pred             CCC--cc--------------------------cHHHHHHHHHh-------------cCCCEEEEeecCCCCCHHHHHHH
Confidence            211  00                          12233333221             1133 789999999999999999


Q ss_pred             HHHHHHHhh
Q psy12099        159 CRDIIQRMH  167 (174)
Q Consensus       159 ~~~~i~~~~  167 (174)
                      +.+.++++.
T Consensus       182 l~~~i~~~~  190 (194)
T 3reg_A          182 SVDCIFSNK  190 (194)
T ss_dssp             HHHHHHCSC
T ss_pred             HHHHHHhcC
Confidence            999987653

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.74  E-value=3.2e-18  Score=123.62  Aligned_cols=110  Identities=17%  Similarity=0.169  Sum_probs=79.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+... ...+.|++|++||+|+..++
T Consensus        59 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~  127 (170)
T 1z08_A           59 IWDTAGQERFHALGPIYYRDSNGAILVYDI----------TDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKER  127 (170)
T ss_dssp             EEECCCC-------CCSSTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGC
T ss_pred             EEECCCcHhhhhhHHHHhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECccccccc
Confidence            699999999999999999999999999999          7888888888888776543 22468999999999997542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.++...             ..+.++++||+++.||+++|+++.
T Consensus       128 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~  164 (170)
T 1z08_A          128 HV------------------------------SIQEAESYAES-------------VGAKHYHTSAKQNKGIEELFLDLC  164 (170)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------TTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHHH-------------cCCeEEEecCCCCCCHHHHHHHHH
Confidence            11                              12233333221             225678999999999999999999


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.+.
T Consensus       165 ~~~~  168 (170)
T 1z08_A          165 KRMI  168 (170)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8875

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.74  E-value=3e-18  Score=128.76  Aligned_cols=120  Identities=12%  Similarity=0.142  Sum_probs=86.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.... .|+..+...  ..+.|++||+||+|+..+
T Consensus        61 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~  128 (212)
T 2j0v_A           61 LWDTAGQEDYSRLRPLSYRGADIFVLAFSL----------ISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDD  128 (212)
T ss_dssp             EECCCCCCCCCC--CGGGTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTC
T ss_pred             EEECCCcHHHHHHHHhhccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhC
Confidence            699999999999999999999999999999          8889998887 676666443  247899999999999754


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...  ...      ...              .-..+++..+...     .       ....++++||+++.||+++|+++
T Consensus       129 ~~~--~~~------~~~--------------~v~~~~~~~~~~~-----~-------~~~~~~~~Sa~~g~gi~~l~~~l  174 (212)
T 2j0v_A          129 KGY--LAD------HTN--------------VITSTQGEELRKQ-----I-------GAAAYIECSSKTQQNVKAVFDTA  174 (212)
T ss_dssp             HHH--HHT------CSS--------------CCCHHHHHHHHHH-----H-------TCSEEEECCTTTCTTHHHHHHHH
T ss_pred             ccc--ccc------ccC--------------CCCHHHHHHHHHH-----c-------CCceEEEccCCCCCCHHHHHHHH
Confidence            321  000      000              0012334433221     0       11367899999999999999999


Q ss_pred             HHHHHHh
Q psy12099        160 RDIIQRM  166 (174)
Q Consensus       160 ~~~i~~~  166 (174)
                      .+.+++.
T Consensus       175 ~~~~~~~  181 (212)
T 2j0v_A          175 IKVVLQP  181 (212)
T ss_dssp             HHHHHCC
T ss_pred             HHHHhhh
Confidence            9988754

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.74  E-value=6e-18  Score=125.31  Aligned_cols=122  Identities=13%  Similarity=0.206  Sum_probs=88.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.... .|+..+...  ..++|++||+||+|+..+
T Consensus        70 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~  137 (194)
T 2atx_A           70 LYDTAGQEDYDRLRPLSYPMTDVFLICFSV----------VNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDD  137 (194)
T ss_dssp             EECCCCSSSSTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTC
T ss_pred             EEECCCCcchhHHHHHhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccc
Confidence            699999999999999999999999999999          8888998887 677766543  247899999999999754


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...  ...+    .+...            ..-..+++..+....            ....++++||+++.||+++|+++
T Consensus       138 ~~~--~~~~----~~~~~------------~~v~~~~~~~~~~~~------------~~~~~~~~Sa~~g~gi~~l~~~l  187 (194)
T 2atx_A          138 PKT--LARL----NDMKE------------KPICVEQGQKLAKEI------------GACCYVECSALTQKGLKTVFDEA  187 (194)
T ss_dssp             HHH--HHHH----TTTTC------------CCCCHHHHHHHHHHH------------TCSCEEECCTTTCTTHHHHHHHH
T ss_pred             ccc--hhhc----ccccC------------cccCHHHHHHHHHHc------------CCcEEEEeeCCCCCCHHHHHHHH
Confidence            311  0111    11100            001234444443211            11267899999999999999999


Q ss_pred             HHHHH
Q psy12099        160 RDIIQ  164 (174)
Q Consensus       160 ~~~i~  164 (174)
                      .+.++
T Consensus       188 ~~~i~  192 (194)
T 2atx_A          188 IIAIL  192 (194)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98876

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.73  E-value=5.6e-18  Score=124.72  Aligned_cols=123  Identities=11%  Similarity=0.051  Sum_probs=87.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++... ..|+..+...  ..+.|++|++||+|+..+
T Consensus        59 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~  126 (184)
T 1m7b_A           59 LWDTSGSPYYDNVRPLSYPDSDAVLICFDI----------SRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTD  126 (184)
T ss_dssp             EEEECCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGC
T ss_pred             EEECCCChhhhhhHHhhcCCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcc
Confidence            699999999999999999999999999999          788899888 4666665433  257899999999999753


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc-cchhHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV-DTENIRRVFND  158 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~-d~~~i~~~f~~  158 (174)
                      ...     +.+.-.+...             .-..+++..+....            ..+.+++|||+ ++.||+++|+.
T Consensus       127 ~~~-----~~~~~~~~~~-------------~v~~~~~~~~~~~~------------~~~~~~e~Sa~~~~~gi~~l~~~  176 (184)
T 1m7b_A          127 VST-----LVELSNHRQT-------------PVSYDQGANMAKQI------------GAATYIECSALQSENSVRDIFHV  176 (184)
T ss_dssp             HHH-----HHHHHTTTCC-------------CCCHHHHHHHHHHH------------TCSEEEECBTTTBHHHHHHHHHH
T ss_pred             hhh-----HhhhhhcccC-------------CCCHHHHHHHHHHc------------CCcEEEEeeecCCCcCHHHHHHH
Confidence            211     1111000000             01234444443210            12567899998 78999999999


Q ss_pred             HHHHHHH
Q psy12099        159 CRDIIQR  165 (174)
Q Consensus       159 ~~~~i~~  165 (174)
                      +.+.+++
T Consensus       177 i~~~~l~  183 (184)
T 1m7b_A          177 ATLACVN  183 (184)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998874

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.73  E-value=3e-18  Score=123.60  Aligned_cols=111  Identities=17%  Similarity=0.216  Sum_probs=87.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++..|..|+++++++|+|+|+          ++..++.....|+..+.... ..+.|+++++||+|+....
T Consensus        56 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~  124 (170)
T 1g16_A           56 IWDTAGQERFRTITTAYYRGAMGIILVYDI----------TDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRV  124 (170)
T ss_dssp             EECCTTGGGTSCCCHHHHTTEEEEEEEEET----------TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCC
T ss_pred             EEeCCCChhhhhhHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCc
Confidence            699999999999999999999999999999          78888888888888876542 3578999999999993221


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                               .+.+..+...             ..+.++++||+++.||+++|+++.
T Consensus       125 ~~-------------------------------~~~~~~~~~~-------------~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A          125 VT-------------------------------ADQGEALAKE-------------LGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             SC-------------------------------HHHHHHHHHH-------------HTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             cC-------------------------------HHHHHHHHHH-------------cCCeEEEEECCCCCCHHHHHHHHH
Confidence            11                               1223333211             125678999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.++
T Consensus       161 ~~~~~~  166 (170)
T 1g16_A          161 KLIQEK  166 (170)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            988754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.73  E-value=3e-18  Score=123.40  Aligned_cols=112  Identities=18%  Similarity=0.176  Sum_probs=86.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++..|..|+++++++|+|+|+          ++..++.....|+..+.... ..+.|+++++||+|+..+.
T Consensus        56 ~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~  124 (170)
T 1ek0_A           56 IWDTAGQERFASLAPXYYRNAQAALVVYDV----------TKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEG  124 (170)
T ss_dssp             EEEECCSGGGGGGHHHHHTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSS
T ss_pred             EEECCCChhhhhhhhhhhccCcEEEEEEec----------CChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccc
Confidence            699999999999999999999999999999          78889999988888886653 3578999999999997532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..   ..+                        ..+.+.++...             ..+.++++||+++.||+++|+++.
T Consensus       125 ~~---~~v------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~  164 (170)
T 1ek0_A          125 GE---RKV------------------------AREEGEKLAEE-------------KGLLFFETSAKTGENVNDVFLGIG  164 (170)
T ss_dssp             CC---CCS------------------------CHHHHHHHHHH-------------HTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             cc---cCC------------------------CHHHHHHHHHH-------------cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            10   000                        11223333211             235788999999999999999988


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       165 ~~i  167 (170)
T 1ek0_A          165 EKI  167 (170)
T ss_dssp             TTS
T ss_pred             HHH
Confidence            754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.73  E-value=2.7e-18  Score=123.59  Aligned_cols=110  Identities=15%  Similarity=0.119  Sum_probs=87.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++.++.+|..|+++++++|+|+|+          ++..++.....|+..+....  .+.|+++++||+|+..++
T Consensus        58 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~  125 (168)
T 1z2a_A           58 LWDTAGQEEFDAITKAYYRGAQACVLVFST----------TDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDS  125 (168)
T ss_dssp             EECCTTGGGTTCCCHHHHTTCCEEEEEEET----------TCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGC
T ss_pred             EEcCCCcHhHHHHHHHHhcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCccc
Confidence            699999999999999999999999999999          78888888888888876543  578999999999997532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.++...             ..+.++++||+++.||+++|+++.
T Consensus       126 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~i~~l~~~l~  162 (168)
T 1z2a_A          126 CI------------------------------KNEEAEGLAKR-------------LKLRFYRTSVKEDLNVSEVFKYLA  162 (168)
T ss_dssp             SS------------------------------CHHHHHHHHHH-------------HTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHHH-------------cCCeEEEEecCCCCCHHHHHHHHH
Confidence            11                              01223333211             125678999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.+++
T Consensus       163 ~~~~~  167 (168)
T 1z2a_A          163 EKHLQ  167 (168)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            88764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.73  E-value=7e-18  Score=125.12  Aligned_cols=111  Identities=18%  Similarity=0.122  Sum_probs=87.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.... ..+.|++||+||+|+..++
T Consensus        76 i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~  144 (192)
T 2fg5_A           76 IWDTAGQERFHSLAPMYYRGSAAAVIVYDI----------TKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIR  144 (192)
T ss_dssp             EEEECCSGGGGGGTHHHHTTCSEEEEEEET----------TCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGC
T ss_pred             EEcCCCchhhHhhhHHhhccCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECccccccc
Confidence            699999999999999999999999999999          78889999888888875542 4578999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.++..             ...+.++++||+++.||+++|+++.
T Consensus       145 ~v------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~l~  181 (192)
T 2fg5_A          145 EV------------------------------PLKDAKEYAE-------------SIGAIVVETSAKNAINIEELFQGIS  181 (192)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------TTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            11                              1223333321             1236788999999999999999998


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.+.+
T Consensus       182 ~~i~~  186 (192)
T 2fg5_A          182 RQIPP  186 (192)
T ss_dssp             HTCC-
T ss_pred             HHHHh
Confidence            87654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.73  E-value=4.8e-18  Score=128.36  Aligned_cols=126  Identities=15%  Similarity=0.177  Sum_probs=74.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.... .|+..+...  ..++|++||+||+|+..+
T Consensus        86 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~  153 (214)
T 2j1l_A           86 IWDTAGQDDYDRLRPLFYPDASVLLLCFDV----------TSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKD  153 (214)
T ss_dssp             EEEC---------------CEEEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSC
T ss_pred             EEECCCchhhhHHHHHHhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhcc
Confidence            699999999999999999999999999999          7888998886 566666443  257899999999999754


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...  ...+..    ...  .          .-..+++..+...            .....++++||+++.||+++|+++
T Consensus       154 ~~~--~~~~~~----~~~--~----------~v~~~~~~~~~~~------------~~~~~~~~~SA~~g~gi~el~~~l  203 (214)
T 2j1l_A          154 KSL--VNKLRR----NGL--E----------PVTYHRGQEMARS------------VGAVAYLECSARLHDNVHAVFQEA  203 (214)
T ss_dssp             HHH--HHHHHH----TTC--C----------CCCHHHHHHHHHH------------TTCSEEEECBTTTTBSHHHHHHHH
T ss_pred             chh--hhhhcc----ccc--C----------cccHHHHHHHHHh------------cCCCEEEEecCCCCCCHHHHHHHH
Confidence            321  011110    000  0          0123344444221            011367899999999999999999


Q ss_pred             HHHHHHhhh
Q psy12099        160 RDIIQRMHL  168 (174)
Q Consensus       160 ~~~i~~~~~  168 (174)
                      .+.+++...
T Consensus       204 ~~~~~~~~~  212 (214)
T 2j1l_A          204 AEVALSSRG  212 (214)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHhhc
Confidence            999986644

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.73  E-value=1.3e-17  Score=123.36  Aligned_cols=109  Identities=18%  Similarity=0.175  Sum_probs=87.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|++.++.+|..|+++++++|+|+|+          ++..++.+...|+..+....   +.|+++|+||+|+ .+.
T Consensus        97 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~----------~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~-~~~  162 (208)
T 3clv_A           97 IWDTAGQERYASIVPLYYRGATCAIVVFDI----------SNSNTLDRAKTWVNQLKISS---NYIIILVANKIDK-NKF  162 (208)
T ss_dssp             EEECTTGGGCTTTHHHHHTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTC-C-C
T ss_pred             EEECCCcHHHHHHHHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCc-ccc
Confidence            699999999999999999999999999999          78888988888888886543   3899999999993 211


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.+++..             ..+.++++||+++.||.++|+++.
T Consensus       163 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~i~~l~~~l~  199 (208)
T 3clv_A          163 QV------------------------------DILEVQKYAQD-------------NNLLFIQTSAKTGTNIKNIFYMLA  199 (208)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------TTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             cC------------------------------CHHHHHHHHHH-------------cCCcEEEEecCCCCCHHHHHHHHH
Confidence            00                              12334444322             235788999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.++
T Consensus       200 ~~~~~~  205 (208)
T 3clv_A          200 EEIYKN  205 (208)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988765

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.73  E-value=8.2e-18  Score=135.58  Aligned_cols=115  Identities=22%  Similarity=0.386  Sum_probs=87.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||+.++.+|..|+++++++|+|+|+          ++..++.....++..++......++|++||+||+|+..+.
T Consensus       213 i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~  282 (329)
T 3o47_A          213 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM  282 (329)
T ss_dssp             EEECC-----CCSHHHHHTTEEEEEEEEET----------TCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             EEECCCCHhHHHHHHHHhccCCEEEEEEEC----------CchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc
Confidence            699999999999999999999999999999          7899999999999999887767789999999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                            ...+....++                               ..   ......+.++++||+++.||+++|++|.
T Consensus       283 ------~~~~i~~~~~-------------------------------~~---~~~~~~~~~~~vSAk~g~gi~el~~~l~  322 (329)
T 3o47_A          283 ------NAAEITDKLG-------------------------------LH---SLRHRNWYIQATCATSGDGLYEGLDWLS  322 (329)
T ss_dssp             ------CHHHHHHHHT-------------------------------CT---TCCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             ------CHHHHHHHhc-------------------------------hh---hhhcCCCEEEEEECCCCcCHHHHHHHHH
Confidence                  1111111111                               00   0233557889999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.+.+
T Consensus       323 ~~l~~  327 (329)
T 3o47_A          323 NQLRN  327 (329)
T ss_dssp             HHHTC
T ss_pred             HHHHh
Confidence            88754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.73  E-value=9.8e-18  Score=125.27  Aligned_cols=122  Identities=18%  Similarity=0.152  Sum_probs=86.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.... .|...+...  ..+.|++||+||+|+..+
T Consensus        77 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~  144 (201)
T 2gco_A           77 LWDTAGQEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQD  144 (201)
T ss_dssp             EECCCCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTC
T ss_pred             EEECCCchhHHHHHHHhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcC
Confidence            699999999999999999999999999999          7888888884 555554332  247899999999999764


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...  ...+.+.....                -..+++..+...            .....++++||+++.||+++|+++
T Consensus       145 ~~~--~~~~~~~~~~~----------------v~~~~~~~~~~~------------~~~~~~~~~SA~~g~gi~~l~~~i  194 (201)
T 2gco_A          145 EHT--RRELAKMKQEP----------------VRSEEGRDMANR------------ISAFGYLECSAKTKEGVREVFEMA  194 (201)
T ss_dssp             HHH--HHHHHTTTCCC----------------CCHHHHHHHHHH------------TTCSEEEECCTTTCTTHHHHHHHH
T ss_pred             ccc--hhhhcccccCc----------------CCHHHHHHHHHh------------CCCcEEEEeeCCCCCCHHHHHHHH
Confidence            322  11111111000                013334444221            011267899999999999999999


Q ss_pred             HHHHH
Q psy12099        160 RDIIQ  164 (174)
Q Consensus       160 ~~~i~  164 (174)
                      .+.++
T Consensus       195 ~~~~l  199 (201)
T 2gco_A          195 TRAGL  199 (201)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98876

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.73  E-value=8.1e-18  Score=122.87  Aligned_cols=120  Identities=13%  Similarity=0.130  Sum_probs=85.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.... .|+..+...  ..+.|++|++||+|+..+
T Consensus        60 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~  127 (182)
T 3bwd_D           60 LWDTAGQEDYNRLRPLSYRGADVFILAFSL----------ISKASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDD  127 (182)
T ss_dssp             EECCCC-CTTTTTGGGGGTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTC
T ss_pred             EEECCCChhhhhhHHhhccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcC
Confidence            699999999999999999999999999999          7888998887 566665443  247899999999999754


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...     ... .+ ..             ..-..+++..+...     .       ....++++||+++.||+++|+++
T Consensus       128 ~~~-----~~~-~~-~~-------------~~v~~~~~~~~~~~-----~-------~~~~~~~~Sa~~~~gi~~l~~~l  175 (182)
T 3bwd_D          128 KQF-----FID-HP-GA-------------VPITTVQGEELKKL-----I-------GAPAYIECSSKSQENVKGVFDAA  175 (182)
T ss_dssp             HHH-----HHH-C---C-------------CCCCHHHHHHHHHH-----H-------TCSEEEECCTTTCTTHHHHHHHH
T ss_pred             ccc-----ccc-cc-cC-------------CCCCHHHHHHHHHH-----c-------CCCEEEEEECCCCCCHHHHHHHH
Confidence            321     000 00 00             00112334443221     0       11367899999999999999999


Q ss_pred             HHHHH
Q psy12099        160 RDIIQ  164 (174)
Q Consensus       160 ~~~i~  164 (174)
                      .+.++
T Consensus       176 ~~~i~  180 (182)
T 3bwd_D          176 IRVVL  180 (182)
T ss_dssp             HHHHS
T ss_pred             HHHHh
Confidence            88764

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.72  E-value=1.1e-17  Score=126.03  Aligned_cols=123  Identities=11%  Similarity=0.051  Sum_probs=87.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++... ..|+..+...  ..+.|++||+||+|+..+
T Consensus        80 i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~----------~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~  147 (205)
T 1gwn_A           80 LWDTSGSPYYDNVRPLSYPDSDAVLICFDI----------SRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTD  147 (205)
T ss_dssp             EEEECCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGC
T ss_pred             EEeCCCcHhhhHHHHhhccCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccc
Confidence            699999999999999999999999999999          788899888 5666666443  257899999999999753


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc-cchhHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV-DTENIRRVFND  158 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~-d~~~i~~~f~~  158 (174)
                      ...     +.++-.+...             .-..+++..+....            ..+.+++|||+ ++.||+++|+.
T Consensus       148 ~~~-----~~~~~~~~~~-------------~v~~~~~~~~~~~~------------~~~~~~e~SAk~~~~gv~~lf~~  197 (205)
T 1gwn_A          148 VST-----LVELSNHRQT-------------PVSYDQGANMAKQI------------GAATYIECSALQSENSVRDIFHV  197 (205)
T ss_dssp             HHH-----HHHHHTTTCC-------------CCCHHHHHHHHHHH------------TCSEEEECCTTTCHHHHHHHHHH
T ss_pred             hhh-----hhhhcccccC-------------CCCHHHHHHHHHHc------------CCCEEEEeeeccCCcCHHHHHHH
Confidence            211     1111000000             00233444443210            12467899998 68999999999


Q ss_pred             HHHHHHH
Q psy12099        159 CRDIIQR  165 (174)
Q Consensus       159 ~~~~i~~  165 (174)
                      +.+.+++
T Consensus       198 l~~~~l~  204 (205)
T 1gwn_A          198 ATLACVN  204 (205)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9998875

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.72  E-value=7e-18  Score=120.73  Aligned_cols=111  Identities=18%  Similarity=0.133  Sum_probs=87.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++..|..|+++++++|+|+|+          ++..++.....|+..+.......+.|+++++||+|+....
T Consensus        55 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~  124 (166)
T 2ce2_X           55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAI----------NNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART  124 (166)
T ss_dssp             EEECCCCSSCCHHHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC
T ss_pred             EEECCCchhhhHHHHHhhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc
Confidence            599999999999999999999999999999          7888998888888887665444578999999999986521


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                               .+.+.++...             ..+.++++||+++.|++++|+++.
T Consensus       125 ~~-------------------------------~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X          125 VE-------------------------------SRQAQDLARS-------------YGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             SC-------------------------------HHHHHHHHHH-------------HTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             cC-------------------------------HHHHHHHHHH-------------cCCeEEEecCCCCCCHHHHHHHHH
Confidence            11                               1222333211             125678999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T 2ce2_X          161 REIRQ  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            88753

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.72  E-value=9.1e-18  Score=125.27  Aligned_cols=114  Identities=15%  Similarity=0.143  Sum_probs=88.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC---CCCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR---WLRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~---~~~~~~iilv~NK~Dl~   77 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+....   ...+.|++||+||+|+.
T Consensus        61 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  130 (207)
T 1vg8_A           61 IWDTAGQERFQSLGVAFYRGADCCVLVFDV----------TAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE  130 (207)
T ss_dssp             EEEECSSGGGSCSCCGGGTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred             EEeCCCcHHHHHhHHHHHhCCcEEEEEEEC----------CCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence            699999999999999999999999999999          78888888888877775432   12478999999999986


Q ss_pred             hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099         78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN  157 (174)
Q Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~  157 (174)
                      .....                               .+.+..+...            ...+.++++||+++.||+++|+
T Consensus       131 ~~~~~-------------------------------~~~~~~~~~~------------~~~~~~~~~Sa~~g~gi~~l~~  167 (207)
T 1vg8_A          131 NRQVA-------------------------------TKRAQAWCYS------------KNNIPYFETSAKEAINVEQAFQ  167 (207)
T ss_dssp             CCCSC-------------------------------HHHHHHHHHH------------TTSCCEEECBTTTTBSHHHHHH
T ss_pred             ccccC-------------------------------HHHHHHHHHh------------cCCceEEEEeCCCCCCHHHHHH
Confidence            32111                               1223333211            1235678999999999999999


Q ss_pred             HHHHHHHHhh
Q psy12099        158 DCRDIIQRMH  167 (174)
Q Consensus       158 ~~~~~i~~~~  167 (174)
                      ++.+.+.++.
T Consensus       168 ~l~~~~~~~~  177 (207)
T 1vg8_A          168 TIARNALKQE  177 (207)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999988654

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.72  E-value=1.6e-17  Score=123.71  Aligned_cols=113  Identities=16%  Similarity=0.165  Sum_probs=83.8

Q ss_pred             CeeCCCCch-hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRD-ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~-~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|++. ++.++..|+++++++|+|||+          ++..++.....|+..+.......++|++|++||+|+...
T Consensus        60 ~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv----------~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~  129 (192)
T 2cjw_A           60 LLDMWENKGENEWLHDHCMQVGDAYLIVYSI----------TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRX  129 (192)
T ss_dssp             EECCCCC----CTTGGGHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGG
T ss_pred             EEEeccCcchhhhHHHhhcccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcc
Confidence            599999987 678899999999999999999          899999999888887765433357899999999998653


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      +..    .                          .+++..+..             ...+.+++|||+++.||+++|+++
T Consensus       130 r~v----~--------------------------~~~~~~~a~-------------~~~~~~~e~SA~~g~~v~~lf~~l  166 (192)
T 2cjw_A          130 REV----S--------------------------VSEGRAXAV-------------VFDXKFIETSAAVQHNVKELFEGI  166 (192)
T ss_dssp             CCS----C--------------------------HHHHHHHHH-------------HTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             ccc----c--------------------------HHHHHHHHH-------------HhCCceEEeccccCCCHHHHHHHH
Confidence            211    1                          112222211             112467899999999999999999


Q ss_pred             HHHHHHh
Q psy12099        160 RDIIQRM  166 (174)
Q Consensus       160 ~~~i~~~  166 (174)
                      .+.+...
T Consensus       167 ~~~~~~~  173 (192)
T 2cjw_A          167 VRQVRLR  173 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9988644

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.72  E-value=6.9e-17  Score=120.19  Aligned_cols=118  Identities=17%  Similarity=0.143  Sum_probs=80.8

Q ss_pred             CeeCCCCchhhhh-H--hhhhcCCCEEEEEEeCCCccccccCCCCc--chHHHHHHHHHHHHcCCCCCCCcEEEEEeCCc
Q psy12099          1 MFDVGGQRDERRK-W--IQCFNDVTAIIFVTACSSYNMVLREDPTQ--NRLRESLDLFKSIWNNRWLRTISVILFLNKQD   75 (174)
Q Consensus         1 iwD~~Gq~~~r~~-w--~~y~~~~~~ii~v~d~s~~~~~~~e~~~~--~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~D   75 (174)
                      ||||+||++|+.. |  ..||++++++|+|+|+          ++.  +++.....|+..+...  ..++|++||+||+|
T Consensus        73 i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D  140 (196)
T 3llu_A           73 IWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDA----------QDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVD  140 (196)
T ss_dssp             EEECCSSCCTTCTTCCHHHHHHTCSEEEEEEET----------TSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGG
T ss_pred             EEECCCCHHHHhhhhhcccccccCCEEEEEEEC----------CCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccc
Confidence            6999999998766 4  8999999999999999          555  5666666777766432  35899999999999


Q ss_pred             hhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHH
Q psy12099         76 LLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRV  155 (174)
Q Consensus        76 l~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~  155 (174)
                      +..+...  ....+..                     ..+.+..+     ....    .....+.+++|||++ .||+++
T Consensus       141 l~~~~~~--~~~~~~v---------------------~~~~~~~~-----~~~~----~~~~~~~~~e~Sa~~-~~v~~~  187 (196)
T 3llu_A          141 GLSDDHK--IETQRDI---------------------HQRANDDL-----ADAG----LEKLHLSFYLTSIYD-HSIFEA  187 (196)
T ss_dssp             GSCHHHH--HHHHHHH---------------------HHHHHHHH-----HHTT----CTTSCEEEEEECTTS-THHHHH
T ss_pred             cCchhhh--hHHHhHH---------------------HHHHHHHH-----HHhh----hhcCCcceEEEEech-hhHHHH
Confidence            8654211  0000000                     01111111     1110    123457889999999 999999


Q ss_pred             HHHHHHHH
Q psy12099        156 FNDCRDII  163 (174)
Q Consensus       156 f~~~~~~i  163 (174)
                      |..+.+.|
T Consensus       188 f~~l~~~l  195 (196)
T 3llu_A          188 FSKVVQKL  195 (196)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998865

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.71  E-value=2.1e-17  Score=119.10  Aligned_cols=109  Identities=18%  Similarity=0.131  Sum_probs=85.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+... ..++.|++|++||+|+..++
T Consensus        59 ~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~  127 (170)
T 1z0j_A           59 IWDTAGLERFRALAPMYYRGSAAAIIVYDI----------TKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVR  127 (170)
T ss_dssp             EEEECCSGGGGGGTHHHHTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGC
T ss_pred             EEcCCCchhhhcccHhhCcCCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCcccccc
Confidence            699999999999999999999999999999          7888888888888877653 34678999999999997532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.+..+..             ...+.++++||+++.||+++|+++.
T Consensus       128 ~v------------------------------~~~~~~~~~~-------------~~~~~~~~~Sa~~~~~i~~l~~~i~  164 (170)
T 1z0j_A          128 EV------------------------------MERDAKDYAD-------------SIHAIFVETSAKNAININELFIEIS  164 (170)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------HTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHH-------------HcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            11                              0122333321             1225688999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       165 ~~i  167 (170)
T 1z0j_A          165 RRI  167 (170)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            765

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.71  E-value=2.1e-17  Score=124.05  Aligned_cols=125  Identities=18%  Similarity=0.186  Sum_probs=88.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++... ..|+..+...  ..+.|++||+||+|+..+
T Consensus        77 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~  144 (207)
T 2fv8_A           77 LWDTAGQEDYDRLRPLSYPDTDVILMCFSV----------DSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSD  144 (207)
T ss_dssp             EEECTTCTTCTTTGGGGCTTCCEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGC
T ss_pred             EEECCCcHHHHHHHHhhcCCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhcc
Confidence            699999999999999999999999999999          788888888 4565555432  257899999999999764


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...  ...+.+.....                -..+++..+...            .....++++||+++.||+++|+++
T Consensus       145 ~~~--~~~~~~~~~~~----------------v~~~~~~~~~~~------------~~~~~~~~~SA~~g~gi~el~~~l  194 (207)
T 2fv8_A          145 EHV--RTELARMKQEP----------------VRTDDGRAMAVR------------IQAYDYLECSAKTKEGVREVFETA  194 (207)
T ss_dssp             HHH--HHHHHHTTCCC----------------CCHHHHHHHHHH------------TTCSEEEECCTTTCTTHHHHHHHH
T ss_pred             ccc--hhhhhhcccCC----------------CCHHHHHHHHHh------------cCCCEEEEeeCCCCCCHHHHHHHH
Confidence            322  11222111000                012334443211            011267899999999999999999


Q ss_pred             HHHHHHhh
Q psy12099        160 RDIIQRMH  167 (174)
Q Consensus       160 ~~~i~~~~  167 (174)
                      .+.+++..
T Consensus       195 ~~~i~~~~  202 (207)
T 2fv8_A          195 TRAALQKR  202 (207)
T ss_dssp             HHHHHSCC
T ss_pred             HHHHHHHh
Confidence            99887553

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.71  E-value=2.3e-17  Score=120.74  Aligned_cols=123  Identities=12%  Similarity=0.144  Sum_probs=87.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.... .|+..+...  ..+.|++|++||+|+..+
T Consensus        57 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~  124 (186)
T 1mh1_A           57 LWDTAGQEDYDRLRPLSYPQTDVSLICFSL----------VSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDD  124 (186)
T ss_dssp             EECCCCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTC
T ss_pred             EEECCCCHhHHHHHHHhccCCcEEEEEEEC----------CChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEccccccc
Confidence            699999999999999999999999999999          7888898887 566666543  237899999999999754


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...  ...+.+    ...            ..-..+++..+...            .....++++||+++.||+++|+++
T Consensus       125 ~~~--~~~~~~----~~~------------~~v~~~~~~~~~~~------------~~~~~~~~~Sa~~g~gi~~l~~~l  174 (186)
T 1mh1_A          125 KDT--IEKLKE----KKL------------TPITYPQGLAMAKE------------IGAVKYLECSALTQRGLKTVFDEA  174 (186)
T ss_dssp             HHH--HHHHHH----TTC------------CCCCHHHHHHHHHH------------TTCSEEEECCTTTCTTHHHHHHHH
T ss_pred             chh--hhhhcc----ccc------------ccCCHHHHHHHHHh------------cCCcEEEEecCCCccCHHHHHHHH
Confidence            311  111111    000            00013334443221            011367899999999999999999


Q ss_pred             HHHHHH
Q psy12099        160 RDIIQR  165 (174)
Q Consensus       160 ~~~i~~  165 (174)
                      .+.++.
T Consensus       175 ~~~~~~  180 (186)
T 1mh1_A          175 IRAVLC  180 (186)
T ss_dssp             HHHHSC
T ss_pred             HHHHhc
Confidence            988764

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.71  E-value=1.4e-17  Score=124.19  Aligned_cols=117  Identities=15%  Similarity=0.123  Sum_probs=86.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++++..|..|+++++++|+|+|+          ++..++.....|+..+... ...+.|++||+||+|+....
T Consensus        81 i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~----------~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~  149 (199)
T 2p5s_A           81 LWDTAGQERFRSIAKSYFRKADGVLLLYDV----------TCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTA  149 (199)
T ss_dssp             EEECTTCTTCHHHHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHH
T ss_pred             EEECCCCcchhhhHHHHHhhCCEEEEEEEC----------CChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccccccc
Confidence            699999999999999999999999999999          7888888888888776443 23578999999999997543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      .......+                        ..+.+..+...             ..+.++++||+++.||.++|.++.
T Consensus       150 ~~~~~~~v------------------------~~~~~~~~~~~-------------~~~~~~~~SA~~g~gv~el~~~l~  192 (199)
T 2p5s_A          150 ATEGQKCV------------------------PGHFGEKLAMT-------------YGALFCETSAKDGSNIVEAVLHLA  192 (199)
T ss_dssp             HHTTCCCC------------------------CHHHHHHHHHH-------------HTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             cccccccc------------------------CHHHHHHHHHH-------------cCCeEEEeeCCCCCCHHHHHHHHH
Confidence            21000000                        12233333221             225678999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.+.+
T Consensus       193 ~~i~~  197 (199)
T 2p5s_A          193 REVKK  197 (199)
T ss_dssp             HHHTC
T ss_pred             HHHHh
Confidence            88753

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.71  E-value=6.9e-18  Score=122.64  Aligned_cols=110  Identities=16%  Similarity=0.190  Sum_probs=86.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++..|..|+++++++|+|+|+          ++..++.....|+..+.... ..+.|+++|+||+|+..++
T Consensus        67 ~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~  135 (179)
T 2y8e_A           67 LWDTAGQERFRSLIPSYIRDSTVAVVVYDI----------TNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKR  135 (179)
T ss_dssp             EEEECCSGGGGGGSHHHHHTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGC
T ss_pred             EEECCCcHHHHHHHHHHhcCCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccC
Confidence            699999999999999999999999999999          78888888888888876542 3578999999999997542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+...             ..+.++++||+++.||+++|+++.
T Consensus       136 ~~------------------------------~~~~~~~~~~~-------------~~~~~~~~Sa~~~~~i~~l~~~l~  172 (179)
T 2y8e_A          136 QV------------------------------STEEGERKAKE-------------LNVMFIETSAKAGYNVKQLFRRVA  172 (179)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             cC------------------------------CHHHHHHHHHH-------------cCCeEEEEeCCCCCCHHHHHHHHH
Confidence            11                              11223333221             125678999999999999999998


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.+.
T Consensus       173 ~~~~  176 (179)
T 2y8e_A          173 AALP  176 (179)
T ss_dssp             HTCC
T ss_pred             HHHh
Confidence            7654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.71  E-value=1.1e-17  Score=125.50  Aligned_cols=121  Identities=12%  Similarity=0.151  Sum_probs=86.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.+.. .|+..+....  .+.|++||+||+|+..+
T Consensus        82 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~  149 (204)
T 4gzl_A           82 LWDTAGLEDYDRLRPLSYPQTDVFLICFSL----------VSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDD  149 (204)
T ss_dssp             EEEECCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTC
T ss_pred             EEECCCchhhHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccc
Confidence            699999999999999999999999999999          8899999887 5666654432  57899999999999764


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...  ...+.+    ...            ..-..+++..+...            .....++++||+++.||+++|+++
T Consensus       150 ~~~--~~~~~~----~~~------------~~v~~~~~~~~~~~------------~~~~~~~~~SA~~g~gi~~l~~~l  199 (204)
T 4gzl_A          150 KDT--IEKLKE----KKL------------TPITYPQGLAMAKE------------IGAVKYLECSALTQRGLKTVFDEA  199 (204)
T ss_dssp             HHH--HHHHHH----TTC------------CCCCHHHHHHHHHH------------TTCSEEEECCTTTCTTHHHHHHHH
T ss_pred             hhh--hhhhhc----ccc------------ccccHHHHHHHHHh------------cCCcEEEEeeCCCCCCHHHHHHHH
Confidence            322  111111    000            00123344444221            112347899999999999999999


Q ss_pred             HHHH
Q psy12099        160 RDII  163 (174)
Q Consensus       160 ~~~i  163 (174)
                      .+.+
T Consensus       200 ~~~~  203 (204)
T 4gzl_A          200 IRAV  203 (204)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            8754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.71  E-value=3.2e-17  Score=119.56  Aligned_cols=114  Identities=18%  Similarity=0.171  Sum_probs=82.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHc--CCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWN--NRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~--~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +|||+||++     ..|+++++++|+|+|+          ++..++.....|+..+..  .....++|++|++||+|+..
T Consensus        58 i~Dt~G~~~-----~~~~~~~d~~ilv~D~----------~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  122 (178)
T 2iwr_A           58 IREEAGAPD-----AKFSGWADAVIFVFSL----------EDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA  122 (178)
T ss_dssp             EEECSSSCC-----HHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBT
T ss_pred             EEECCCCch-----hHHHHhCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence            699999987     5689999999999999          889999888886544422  22235789999999999853


Q ss_pred             HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099         79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND  158 (174)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~  158 (174)
                      ....  ..                          ..+++.++...            ...+.+++|||+++.||+++|++
T Consensus       123 ~~~~--~v--------------------------~~~~~~~~~~~------------~~~~~~~~~Sa~~~~~i~~lf~~  162 (178)
T 2iwr_A          123 SSPR--VV--------------------------GDARARALXAD------------MKRCSYYETXATYGLNVDRVFQE  162 (178)
T ss_dssp             TBCC--CS--------------------------CHHHHHHHHHH------------HSSEEEEEEBTTTTBTHHHHHHH
T ss_pred             cccC--cC--------------------------CHHHHHHHHHh------------hcCCeEEEEeccccCCHHHHHHH
Confidence            2100  00                          12333333221            02367889999999999999999


Q ss_pred             HHHHHHHhhhh
Q psy12099        159 CRDIIQRMHLR  169 (174)
Q Consensus       159 ~~~~i~~~~~~  169 (174)
                      +.+.+++...+
T Consensus       163 l~~~~~~~~~~  173 (178)
T 2iwr_A          163 VAQKVVTLRKQ  173 (178)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999876443

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.70  E-value=1.2e-17  Score=126.43  Aligned_cols=109  Identities=17%  Similarity=0.116  Sum_probs=85.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+...  ..+.|++||+||+|+..+.
T Consensus        68 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~  135 (221)
T 3gj0_A           68 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDV----------TSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRK  135 (221)
T ss_dssp             EEEECSGGGTSCCCHHHHTTCCEEEEEEET----------TCHHHHHTHHHHHHHHHHH--STTCCEEEEEECTTSSSCS
T ss_pred             EEeCCChHHHhHHHHHHHhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCcccccc
Confidence            699999999999999999999999999999          7889999988888888765  2478999999999996543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..   .....                             +..             ...+.++++||+++.||+++|.++.
T Consensus       136 ~~---~~~~~-----------------------------~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~l~  170 (221)
T 3gj0_A          136 VK---AKSIV-----------------------------FHR-------------KKNLQYYDISAKSNYNFEKPFLWLA  170 (221)
T ss_dssp             SC---GGGCC-----------------------------HHH-------------HHTCEEEECBGGGTBTTTHHHHHHH
T ss_pred             cc---HHHHH-----------------------------HHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            22   11111                             110             1225677889999999999999888


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.++..
T Consensus       171 ~~l~~~  176 (221)
T 3gj0_A          171 RKLIGD  176 (221)
T ss_dssp             HHHHTC
T ss_pred             HHHHhC
Confidence            887654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.70  E-value=2.1e-17  Score=123.84  Aligned_cols=111  Identities=17%  Similarity=0.220  Sum_probs=86.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++.++.+|..|+++++++|+|+|+          ++..++.....|+..+.... ..+.|++||+||+|+....
T Consensus        73 l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~  141 (213)
T 3cph_A           73 LWDTAGQERFRTITTAYYRGAMGIILVYDV----------TDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRV  141 (213)
T ss_dssp             EECCTTGGGGTCCCHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCC
T ss_pred             EEeCCCcHHHHHHHHHHhccCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccc
Confidence            699999999999999999999999999999          78888888888888876542 3478999999999983221


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                               .+.+..+...             ..+.++++||+++.||+++|+++.
T Consensus       142 ~~-------------------------------~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l~  177 (213)
T 3cph_A          142 VT-------------------------------ADQGEALAKE-------------LGIPFIESSAKNDDNVNEIFFTLA  177 (213)
T ss_dssp             SC-------------------------------HHHHHHHHHH-------------HTCCEEECBTTTTBSSHHHHHHHH
T ss_pred             cC-------------------------------HHHHHHHHHH-------------cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11                               1222222211             124678999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+..+
T Consensus       178 ~~~~~~  183 (213)
T 3cph_A          178 KLIQEK  183 (213)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988765

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.69  E-value=4.9e-17  Score=122.59  Aligned_cols=112  Identities=11%  Similarity=-0.007  Sum_probs=86.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++.++.+|..|+++++++|+|+|+          ++..++.....|+..+.... ..+.|++||+||+|+..+.
T Consensus        65 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~  133 (218)
T 4djt_A           65 VWDTAGQEKKAVLKDVYYIGASGAILFFDV----------TSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQ  133 (218)
T ss_dssp             EEEECSGGGTSCCCHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC---
T ss_pred             EEecCCchhhchHHHHHhhcCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccc
Confidence            699999999999999999999999999999          78888888888887775442 3458999999999997542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..    .                          .+.+..+             +....+.++++||+++.||+++|+++.
T Consensus       134 ~~----~--------------------------~~~~~~~-------------~~~~~~~~~~~Sa~~g~gv~~l~~~l~  170 (218)
T 4djt_A          134 KI----S--------------------------KKLVMEV-------------LKGKNYEYFEISAKTAHNFGLPFLHLA  170 (218)
T ss_dssp             -C----C--------------------------HHHHHHH-------------TTTCCCEEEEEBTTTTBTTTHHHHHHH
T ss_pred             cc----C--------------------------HHHHHHH-------------HHHcCCcEEEEecCCCCCHHHHHHHHH
Confidence            11    0                          1112222             223446788999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+...
T Consensus       171 ~~~~~~  176 (218)
T 4djt_A          171 RIFTGR  176 (218)
T ss_dssp             HHHHCC
T ss_pred             HHHhcc
Confidence            988754

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.69  E-value=8.7e-18  Score=125.27  Aligned_cols=110  Identities=19%  Similarity=0.177  Sum_probs=77.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+... ...+.|++||+||+|+..++
T Consensus        86 i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~  154 (199)
T 3l0i_B           86 IWDTAGQERFRTITSSYYRGAHGIIVVYDV----------TDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKK  154 (199)
T ss_dssp             EECCTTCTTCCCCSCC--CCCSEEEECC-C----------CCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--C
T ss_pred             EEECCCcHhHHHHHHHHhhcCCEEEEEEEC----------CCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccc
Confidence            699999999999999999999999999999          7899999998888887544 34578999999999997543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ... ......+..                                          ...+.++++||+++.||+++|+++.
T Consensus       155 ~v~-~~~~~~~~~------------------------------------------~~~~~~~~vSA~~g~gv~~l~~~l~  191 (199)
T 3l0i_B          155 VVD-YTTAKEFAD------------------------------------------SLGIPFLETSAKNATNVEQSFMTMA  191 (199)
T ss_dssp             CCC-SCC-CHHHH------------------------------------------TTTCCBCCCCC---HHHHHHHHHHT
T ss_pred             cCC-HHHHHHHHH------------------------------------------HcCCeEEEEECCCCCCHHHHHHHHH
Confidence            210 011111111                                          1225577899999999999999998


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.+.
T Consensus       192 ~~l~  195 (199)
T 3l0i_B          192 AEIK  195 (199)
T ss_dssp             TTTT
T ss_pred             HHHH
Confidence            7664

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.68  E-value=1.1e-17  Score=120.63  Aligned_cols=111  Identities=18%  Similarity=0.203  Sum_probs=83.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC-CCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR-WLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~-~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.... ...+.|+++++||+|+..+
T Consensus        55 ~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~  124 (172)
T 2erx_A           55 ITDTTGSHQFPAMQRLSISKGHAFILVYSI----------TSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS  124 (172)
T ss_dssp             EEECCSCSSCHHHHHHHHHHCSEEEEEEET----------TCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred             EEECCCchhhHHHHHHhcccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc
Confidence            699999999999999999999999999999          78888888888877765431 2357899999999998654


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      +..    .                          .+.+..+..             ...+.++++||+++.||+++|+++
T Consensus       125 ~~v----~--------------------------~~~~~~~~~-------------~~~~~~~~~Sa~~~~gi~~l~~~l  161 (172)
T 2erx_A          125 REV----Q--------------------------SSEAEALAR-------------TWKCAFMETSAKLNHNVKELFQEL  161 (172)
T ss_dssp             CCS----C--------------------------HHHHHHHHH-------------HHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             ccc----C--------------------------HHHHHHHHH-------------HhCCeEEEecCCCCcCHHHHHHHH
Confidence            211    0                          111222211             112567899999999999999999


Q ss_pred             HHHHH
Q psy12099        160 RDIIQ  164 (174)
Q Consensus       160 ~~~i~  164 (174)
                      .+.+.
T Consensus       162 ~~~~~  166 (172)
T 2erx_A          162 LNLEK  166 (172)
T ss_dssp             HHTCC
T ss_pred             HHHHh
Confidence            87654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.68  E-value=7.6e-18  Score=132.62  Aligned_cols=112  Identities=12%  Similarity=0.034  Sum_probs=78.0

Q ss_pred             eCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHH---HHHcCCC-CCCCcEEEEEeC-Cchh
Q psy12099          3 DVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFK---SIWNNRW-LRTISVILFLNK-QDLL   77 (174)
Q Consensus         3 D~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~---~i~~~~~-~~~~~iilv~NK-~Dl~   77 (174)
                      |+|||++.|.+|.+||++++++|||+|.          ++.+|++ +.+.+.   .++++.. ..++|++|++|| +|+.
T Consensus       193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDS----------sDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp  261 (312)
T 3l2o_B          193 QQGSRYSVIPQIQKVCEVVDGFIYVANA----------EAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV  261 (312)
T ss_dssp             ----CCCCCHHHHHHHHHCSEEEECCBC----------BTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTS
T ss_pred             CCCCHHHHHHHHHHHhcCCCEEEEEecC----------CcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCccccc
Confidence            5799999999999999999999999999          5666654 444333   4555443 578999999996 6886


Q ss_pred             hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099         78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN  157 (174)
Q Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~  157 (174)
                      ...-.   ..+.+.                                  ..++.   . ++.++++.|||++|+++.+.++
T Consensus       262 ~Ams~---~EI~e~----------------------------------L~L~~---l-~r~W~Iq~csA~tGeGL~EGld  300 (312)
T 3l2o_B          262 KRMPC---FYLAHE----------------------------------LHLNL---L-NHPWLVQDTEAETLTGFLNGIE  300 (312)
T ss_dssp             CBCCH---HHHHHH----------------------------------TTGGG---G-CSCEEEEEEETTTCTTHHHHHH
T ss_pred             CCCCH---HHHHHH----------------------------------cCCcc---C-CCcEEEEecccCCCcCHHHHHH
Confidence            53211   111111                                  11222   1 3689999999999999999999


Q ss_pred             HHHHHHHHh
Q psy12099        158 DCRDIIQRM  166 (174)
Q Consensus       158 ~~~~~i~~~  166 (174)
                      |+.+.+.++
T Consensus       301 WL~~~l~~k  309 (312)
T 3l2o_B          301 WILEEVESK  309 (312)
T ss_dssp             HHHHHSCC-
T ss_pred             HHHHHHHhh
Confidence            999887544

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.68  E-value=1.1e-17  Score=124.02  Aligned_cols=112  Identities=21%  Similarity=0.193  Sum_probs=84.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC-CCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR-WLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~-~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.....|+..+.... ...+.|++||+||+|+..+
T Consensus        60 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~  129 (199)
T 2gf0_A           60 ITDTTGSHQFPAMQRLSISKGHAFILVFSV----------TSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR  129 (199)
T ss_dssp             EEECCGGGSCHHHHHHHHHHCSEEEEEEET----------TCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC
T ss_pred             EEeCCChHHhHHHHHHhhccCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc
Confidence            699999999999999999999999999999          78888888777776654422 1347899999999998642


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      .+.                               .+.+..+...             ..+.++++||+++.||+++|+++
T Consensus       130 ~~~-------------------------------~~~~~~~~~~-------------~~~~~~~~Sa~~~~gi~~l~~~l  165 (199)
T 2gf0_A          130 EVD-------------------------------TREAQAVAQE-------------WKCAFMETSAKMNYNVKELFQEL  165 (199)
T ss_dssp             SSC-------------------------------HHHHHHHHHH-------------HTCEEEECBTTTTBSHHHHHHHH
T ss_pred             ccC-------------------------------HHHHHHHHHH-------------hCCeEEEEecCCCCCHHHHHHHH
Confidence            111                               1222222211             12567899999999999999999


Q ss_pred             HHHHHHh
Q psy12099        160 RDIIQRM  166 (174)
Q Consensus       160 ~~~i~~~  166 (174)
                      .+.+..+
T Consensus       166 ~~~~~~~  172 (199)
T 2gf0_A          166 LTLETRR  172 (199)
T ss_dssp             HHHCSSS
T ss_pred             HHHHhhh
Confidence            9877543

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.66  E-value=5.9e-17  Score=119.43  Aligned_cols=114  Identities=14%  Similarity=0.105  Sum_probs=83.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCc-chHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQ-NRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~-~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+||++++.+|..|+++++++++|+|+          ++. .++.....|+..+....  .++|++||+||+|+..+
T Consensus        60 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~  127 (184)
T 2zej_A           60 VWDFAGREEFYSTHPHFMTQRALYLAVYDL----------SKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDE  127 (184)
T ss_dssp             EEEECSHHHHHTTSHHHHHHSEEEEEEEEG----------GGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCH
T ss_pred             EEecCCCHHHHHhhHHHccCCcEEEEEEeC----------CcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccc
Confidence            699999999999999999999999999999          565 46777888888875532  47899999999999754


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcce----eeeecccccch-hHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYC----YPHFTCAVDTE-NIRR  154 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~----~~~~tsA~d~~-~i~~  154 (174)
                      +..  .....                         +.+..+             +....+    .++++||+++. ++.+
T Consensus       128 ~~~--~~~~~-------------------------~~~~~~-------------~~~~~~~~~~~~~~~Sa~~~~~~~~~  167 (184)
T 2zej_A          128 KQR--KACMS-------------------------KITKEL-------------LNKRGFPAIRDYHFVNATEESDALAK  167 (184)
T ss_dssp             HHH--HHHHH-------------------------HHHHHT-------------TTCTTSCEEEEEEECCTTSCCHHHHH
T ss_pred             hhh--HHHHH-------------------------HHHHHH-------------HHhcCCcchhheEEEecccCchhHHH
Confidence            322  00000                         001111             111122    37899999995 9999


Q ss_pred             HHHHHHHHHHHh
Q psy12099        155 VFNDCRDIIQRM  166 (174)
Q Consensus       155 ~f~~~~~~i~~~  166 (174)
                      +++.+.+.+.+.
T Consensus       168 l~~~i~~~~~~~  179 (184)
T 2zej_A          168 LRKTIINESLNF  179 (184)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcc
Confidence            999998877654

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.65  E-value=3.4e-16  Score=117.58  Aligned_cols=69  Identities=16%  Similarity=0.267  Sum_probs=55.9

Q ss_pred             CeeCCCCchhhh-hHhhhhcCCCEEEEEEeCCCccccccCCCCc-chHHHHHHHHHHHHcCC--CCCCCcEEEEEeCCch
Q psy12099          1 MFDVGGQRDERR-KWIQCFNDVTAIIFVTACSSYNMVLREDPTQ-NRLRESLDLFKSIWNNR--WLRTISVILFLNKQDL   76 (174)
Q Consensus         1 iwD~~Gq~~~r~-~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~-~~~~~~~~~~~~i~~~~--~~~~~~iilv~NK~Dl   76 (174)
                      ||||+||++++. +|..|+++++++|+|+|+          ++. .++.....++..++...  ...+.|++||+||+|+
T Consensus        58 i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  127 (214)
T 2fh5_B           58 LIDLPGHESLRFQLLDRFKSSARAVVFVVDS----------AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI  127 (214)
T ss_dssp             EEECCCCHHHHHHHHHHHGGGEEEEEEEEET----------TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTS
T ss_pred             EEECCCChhHHHHHHHHHHhhCCEEEEEEEC----------CCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCC
Confidence            699999999998 899999999999999999          553 34667777777665442  2346899999999999


Q ss_pred             hhH
Q psy12099         77 LAE   79 (174)
Q Consensus        77 ~~~   79 (174)
                      ..+
T Consensus       128 ~~~  130 (214)
T 2fh5_B          128 AMA  130 (214)
T ss_dssp             TTC
T ss_pred             CCc
Confidence            753

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.45  E-value=1.4e-17  Score=124.56  Aligned_cols=121  Identities=12%  Similarity=0.142  Sum_probs=83.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.+.. .|+..+...  ..+.|++||+||+|+..+
T Consensus        82 i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~----------~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~  149 (204)
T 3th5_A           82 LWDTAGQEDYDRLRPLSYPQTDVFLICFSL----------VSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDD  149 (204)
Confidence            699999999999999999999999999999          7888888876 555555432  237899999999999764


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcce-eeeecccccchhHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYC-YPHFTCAVDTENIRRVFND  158 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~-~~~~tsA~d~~~i~~~f~~  158 (174)
                      ...  ...+...   ...             ....+++..+.             ..... .++++||+++.||+++|++
T Consensus       150 ~~~--~~~~~~~---~~~-------------~v~~~~~~~~~-------------~~~~~~~~~~vSA~~g~gi~~l~~~  198 (204)
T 3th5_A          150 KDT--IEKLKEK---KLT-------------PITYPQGLAMA-------------KEIGAVKYLECSALTQRGLKTVFDE  198 (204)
Confidence            321  1111100   000             00111222221             11223 5678999999999999999


Q ss_pred             HHHHHH
Q psy12099        159 CRDIIQ  164 (174)
Q Consensus       159 ~~~~i~  164 (174)
                      +.+.++
T Consensus       199 l~~~il  204 (204)
T 3th5_A          199 AIRAVL  204 (204)
Confidence            987653

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.64  E-value=4.5e-16  Score=123.99  Aligned_cols=123  Identities=12%  Similarity=0.140  Sum_probs=87.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-DLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|+++++.+|..|+++++++|+|+|+          ++..++.... .|+..+....  .++|++||+||+|+...
T Consensus       207 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~  274 (332)
T 2wkq_A          207 LWDTAGLEDYDRLRPLSYPQTDVFLICFSL----------VSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDD  274 (332)
T ss_dssp             EEEECCCGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTC
T ss_pred             EEeCCCchhhhHHHHHhccCCCEEEEEEeC----------CCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccc
Confidence            699999999999999999999999999999          7888988886 5666654432  37899999999999754


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...  ...+.    +...            ..-..+++.++...            .....++++||+++.||+++|+.+
T Consensus       275 ~~~--~~~~~----~~~~------------~~v~~~~~~~~~~~------------~~~~~~~~~Sa~~~~gi~~l~~~l  324 (332)
T 2wkq_A          275 KDT--IEKLK----EKKL------------TPITYPQGLAMAKE------------IGAVKYLECSALTQRGLKTVFDEA  324 (332)
T ss_dssp             HHH--HHHHH----HTTC------------CCCCHHHHHHHHHH------------TTCSEEEECCTTTCTTHHHHHHHH
T ss_pred             cch--hhhcc----cccc------------ccccHHHHHHHHHH------------cCCcEEEEecCCCCcCHHHHHHHH
Confidence            211  01111    1000            00123444444321            011367899999999999999999


Q ss_pred             HHHHHH
Q psy12099        160 RDIIQR  165 (174)
Q Consensus       160 ~~~i~~  165 (174)
                      .+.+++
T Consensus       325 ~~~~~~  330 (332)
T 2wkq_A          325 IRAVLC  330 (332)
T ss_dssp             HHHHHC
T ss_pred             HHHHhc
Confidence            988764

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.63  E-value=2.2e-16  Score=122.74  Aligned_cols=107  Identities=14%  Similarity=0.100  Sum_probs=81.1

Q ss_pred             CCCCchhhhhHhhhhc---------------------CCCEEEEEEeCCCccccccCCCCc--chHHHHHHHHHHHHcCC
Q psy12099          4 VGGQRDERRKWIQCFN---------------------DVTAIIFVTACSSYNMVLREDPTQ--NRLRESLDLFKSIWNNR   60 (174)
Q Consensus         4 ~~Gq~~~r~~w~~y~~---------------------~~~~ii~v~d~s~~~~~~~e~~~~--~~~~~~~~~~~~i~~~~   60 (174)
                      ++||++|+.+|..||+                     +++++|+|+|+          ++.  .+++....|+..+....
T Consensus       125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~----------t~~~~~s~~~~~~~l~~i~~~~  194 (255)
T 3c5h_A          125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV----------SRGMNRNFDDQLKFVSNLYNQL  194 (255)
T ss_dssp             HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC----------BC----CHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC----------CCCchhhHHHHHHHHHHHHHHh
Confidence            8999999999999998                     89999999999          677  89999888888876542


Q ss_pred             CCCCCcEEEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCccee
Q psy12099         61 WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCY  140 (174)
Q Consensus        61 ~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~  140 (174)
                      ...++|++||+||+|+..++..                                +++..+..            ....+.
T Consensus       195 ~~~~~piilV~NK~Dl~~~~~v--------------------------------~~~~~~~~------------~~~~~~  230 (255)
T 3c5h_A          195 AKTKKPIVVVLTKCDEGVERYI--------------------------------RDAHTFAL------------SKKNLQ  230 (255)
T ss_dssp             HHTTCCEEEEEECGGGBCHHHH--------------------------------HHHHHHHH------------TSSSCC
T ss_pred             ccCCCCEEEEEEcccccccHHH--------------------------------HHHHHHHH------------hcCCCe
Confidence            3357899999999998643211                                11222211            012356


Q ss_pred             eeecccccchhHHHHHHHHHHHHH
Q psy12099        141 PHFTCAVDTENIRRVFNDCRDIIQ  164 (174)
Q Consensus       141 ~~~tsA~d~~~i~~~f~~~~~~i~  164 (174)
                      ++++||+++.||+++|+++.+.+.
T Consensus       231 ~~e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          231 VVETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            789999999999999999988763

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.62  E-value=1.3e-15  Score=110.63  Aligned_cols=117  Identities=12%  Similarity=0.118  Sum_probs=79.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|+++++.+|..++++++++|+|+|+          ++.. .....+.+..+.    ..+.|++|++||+|+....
T Consensus        59 l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~-~~~~~~~l~~~~----~~~~p~ilv~nK~Dl~~~~  123 (178)
T 2lkc_A           59 FLDTPGHEAFTTMRARGAQVTDIVILVVAA----------DDGV-MPQTVEAINHAK----AANVPIIVAINKMDKPEAN  123 (178)
T ss_dssp             ESCCCSSSSSSCSCCSSCCCCCEEEEEEET----------TCCC-CHHHHHHHHHHG----GGSCCEEEEEETTTSSCSC
T ss_pred             EEECCCCHHHHHHHHHHHhhCCEEEEEEEC----------CCCC-cHHHHHHHHHHH----hCCCCEEEEEECccCCcCC
Confidence            699999999999999999999999999999          4422 233334444432    2368999999999996521


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      .    ..+...+.....                              ...   .....+.++++||+++.||+++|+++.
T Consensus       124 ~----~~~~~~~~~~~~------------------------------~~~---~~~~~~~~~~~Sa~~~~gv~~l~~~l~  166 (178)
T 2lkc_A          124 P----DRVMQELMEYNL------------------------------VPE---EWGGDTIFCKLSAKTKEGLDHLLEMIL  166 (178)
T ss_dssp             H----HHHHHHHTTTTC------------------------------CBT---TTTSSEEEEECCSSSSHHHHHHHHHHH
T ss_pred             H----HHHHHHHHhcCc------------------------------Chh---HcCCcccEEEEecCCCCCHHHHHHHHH
Confidence            1    111111111110                              000   011236788999999999999999999


Q ss_pred             HHHHHhhhh
Q psy12099        161 DIIQRMHLR  169 (174)
Q Consensus       161 ~~i~~~~~~  169 (174)
                      +.+....++
T Consensus       167 ~~~~~~~~~  175 (178)
T 2lkc_A          167 LVSEMEELK  175 (178)
T ss_dssp             HHHHHTTTT
T ss_pred             Hhhhhhccc
Confidence            988776654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.59  E-value=5.2e-15  Score=107.09  Aligned_cols=102  Identities=13%  Similarity=0.011  Sum_probs=71.7

Q ss_pred             CeeCCCCchhh------hhHhhhhc--CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDER------RKWIQCFN--DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r------~~w~~y~~--~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +|||+|+++++      .++..|++  +++++++|+|.          ++.++   ...|+..+..    .+.|+++++|
T Consensus        54 i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~----------~~~~~---~~~~~~~~~~----~~~p~ilv~n  116 (165)
T 2wji_A           54 VVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDA----------TALER---NLYLTLQLME----MGANLLLALN  116 (165)
T ss_dssp             EEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEET----------TCHHH---HHHHHHHHHH----TTCCEEEEEE
T ss_pred             EEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecC----------CchhH---hHHHHHHHHh----cCCCEEEEEE
Confidence            69999999885      56678886  89999999999          44333   3446666543    2689999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI  152 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i  152 (174)
                      |+|+..++..  ...                             +..+. +.            ..+.++++||+++.||
T Consensus       117 K~Dl~~~~~~--~~~-----------------------------~~~~~-~~------------~~~~~~~~SA~~~~~v  152 (165)
T 2wji_A          117 KMDLAKSLGI--EID-----------------------------VDKLE-KI------------LGVKVVPLSAAKKMGI  152 (165)
T ss_dssp             CHHHHHHTTC--CCC-----------------------------HHHHH-HH------------HTSCEEECBGGGTBSH
T ss_pred             chHhccccCh--hhH-----------------------------HHHHH-HH------------hCCCEEEEEcCCCCCH
Confidence            9999654311  001                             11111 11            1145789999999999


Q ss_pred             HHHHHHHHHHH
Q psy12099        153 RRVFNDCRDII  163 (174)
Q Consensus       153 ~~~f~~~~~~i  163 (174)
                      +++|+++.+.+
T Consensus       153 ~~l~~~l~~~~  163 (165)
T 2wji_A          153 EELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.57  E-value=3.7e-15  Score=118.92  Aligned_cols=117  Identities=16%  Similarity=0.160  Sum_probs=80.1

Q ss_pred             CeeCCCCchh-----hhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHH---HHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDE-----RRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLF---KSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~-----r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~---~~i~~~~~~~~~~iilv~N   72 (174)
                      ||||+||+++     +.+|..|+++++++|+|+|+          ++..++.+...|.   ..+...  .+++|++|++|
T Consensus        56 i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~----------t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~N  123 (307)
T 3r7w_A           56 LWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDV----------ESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLH  123 (307)
T ss_dssp             EEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEET----------TCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEE
T ss_pred             EEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEEC----------CChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEe
Confidence            6999999999     88999999999999999999          7888888876554   343322  35799999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI  152 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i  152 (174)
                      |+|+..+...  . .+.+                     ...+++.++...     .     +-..+.+++|||++ .++
T Consensus       124 K~Dl~~~~~r--~-~~~~---------------------v~~~~~~~~~~~-----~-----g~~~~~~~~tSa~~-~~i  168 (307)
T 3r7w_A          124 KMDLVQLDKR--E-ELFQ---------------------IMMKNLSETSSE-----F-----GFPNLIGFPTSIWD-ESL  168 (307)
T ss_dssp             CGGGSCHHHH--H-HHHH---------------------HHHHHHHHHHHT-----T-----TCCSCEEEECCTTS-SHH
T ss_pred             cccccchhhh--h-HHHH---------------------HHHHHHHHHHHH-----c-----CCCCeEEEEeeecC-ChH
Confidence            9999762111  0 0000                     001122222110     0     00136788999999 899


Q ss_pred             HHHHHHHHHHHH
Q psy12099        153 RRVFNDCRDIIQ  164 (174)
Q Consensus       153 ~~~f~~~~~~i~  164 (174)
                      .++|..+...++
T Consensus       169 ~e~~~~iv~~li  180 (307)
T 3r7w_A          169 YKAWSQIVCSLI  180 (307)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHc
Confidence            999988876543

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.57  E-value=7.3e-15  Score=109.39  Aligned_cols=112  Identities=20%  Similarity=0.214  Sum_probs=86.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|+++++.+|..|+++++++|+|+|+          ++..++.+...|+..+... ...+.|+++++||+|+...+
T Consensus        58 i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~  126 (199)
T 2f9l_A           58 IWDTAGQERYRRITSAYYRGAVGALLVYDI----------AKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLR  126 (199)
T ss_dssp             EEECSSGGGTTCCCHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGC
T ss_pred             EEECCCchhhhhhhHHHHhcCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECccccccc
Confidence            599999999999999999999999999999          7888888877787766432 23468999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.|..+...             ..+.+..|||+++.+++++|+.+.
T Consensus       127 ~~------------------------------~~~~a~~l~~~-------------~~~~~~d~Sal~~~~i~~l~~~l~  163 (199)
T 2f9l_A          127 AV------------------------------PTDEARAFAEK-------------NNLSFIETSALDSTNVEEAFKNIL  163 (199)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             Cc------------------------------CHHHHHHHHHH-------------cCCeEEEEeCCCCCCHHHHHHHHH
Confidence            11                              12234444221             235667799999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+.+.
T Consensus       164 ~~~~~~  169 (199)
T 2f9l_A          164 TEIYRI  169 (199)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.55  E-value=5.4e-15  Score=117.70  Aligned_cols=101  Identities=12%  Similarity=0.047  Sum_probs=73.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcc-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQN-RLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~-~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||  |++++.+|+.||++++++|+|+|+          +++. ++.....|+..+..    .++|++||+||+||..+
T Consensus        67 iwD~--qer~~~l~~~~~~~ad~vilV~D~----------~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~  130 (301)
T 1u0l_A           67 IENV--LHRKNLLTKPHVANVDQVILVVTV----------KMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDE  130 (301)
T ss_dssp             EEEE--CCCSCEETTTTEESCCEEEEEECS----------STTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCH
T ss_pred             EEEE--ccccceeeccccccCCEEEEEEeC----------CCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCc
Confidence            6999  999999999999999999999999          6665 56666667665532    47899999999999654


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ...                                +++.++.. .+    .     .. +.+++|||+++.||+++|..+
T Consensus       131 ~~v--------------------------------~~~~~~~~-~~----~-----~~-~~~~~~SAktg~gv~~lf~~l  167 (301)
T 1u0l_A          131 DDL--------------------------------RKVRELEE-IY----S-----GL-YPIVKTSAKTGMGIEELKEYL  167 (301)
T ss_dssp             HHH--------------------------------HHHHHHHH-HH----T-----TT-SCEEECCTTTCTTHHHHHHHH
T ss_pred             hhH--------------------------------HHHHHHHH-HH----h-----hh-CcEEEEECCCCcCHHHHHHHh
Confidence            211                                11111111 11    1     11 567789999999999999876


Q ss_pred             H
Q psy12099        160 R  160 (174)
Q Consensus       160 ~  160 (174)
                      .
T Consensus       168 ~  168 (301)
T 1u0l_A          168 K  168 (301)
T ss_dssp             S
T ss_pred             c
Confidence            5

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.52  E-value=1.8e-14  Score=102.83  Aligned_cols=101  Identities=14%  Similarity=0.184  Sum_probs=70.6

Q ss_pred             CeeCCCCch-------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q psy12099          1 MFDVGGQRD-------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNK   73 (174)
Q Consensus         1 iwD~~Gq~~-------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK   73 (174)
                      +|||+|++.       ++..|..++++++++|+|+|.          ++..+.  ...++..++..   .+.|+++++||
T Consensus        53 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~--~~~~~~~~~~~---~~~p~ilv~nK  117 (161)
T 2dyk_A           53 LVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDG----------RAELTQ--ADYEVAEYLRR---KGKPVILVATK  117 (161)
T ss_dssp             EEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEES----------SSCCCH--HHHHHHHHHHH---HTCCEEEEEEC
T ss_pred             EEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEEC----------CCcccH--hHHHHHHHHHh---cCCCEEEEEEC
Confidence            699999987       577888999999999999999          443222  12333333333   46899999999


Q ss_pred             CchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHH
Q psy12099         74 QDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIR  153 (174)
Q Consensus        74 ~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~  153 (174)
                      +|+..+..     .+.++. .++                                         ...++++||+++.||+
T Consensus       118 ~Dl~~~~~-----~~~~~~-~~~-----------------------------------------~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A          118 VDDPKHEL-----YLGPLY-GLG-----------------------------------------FGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CCSGGGGG-----GCGGGG-GGS-----------------------------------------SCSCEECBTTTTBSHH
T ss_pred             cccccchH-----hHHHHH-hCC-----------------------------------------CCCeEEEecccCCChH
Confidence            99976521     112221 111                                         0146789999999999


Q ss_pred             HHHHHHHHHH
Q psy12099        154 RVFNDCRDII  163 (174)
Q Consensus       154 ~~f~~~~~~i  163 (174)
                      ++|+++.+.+
T Consensus       151 ~l~~~l~~~l  160 (161)
T 2dyk_A          151 ELLEAIWERL  160 (161)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999987653

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.51  E-value=7.3e-14  Score=106.22  Aligned_cols=117  Identities=15%  Similarity=0.118  Sum_probs=76.1

Q ss_pred             CeeCCCC------chh---hhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchH--HHHHHHHHHHHcCCCCCCCcEEE
Q psy12099          1 MFDVGGQ------RDE---RRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRL--RESLDLFKSIWNNRWLRTISVIL   69 (174)
Q Consensus         1 iwD~~Gq------~~~---r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~--~~~~~~~~~i~~~~~~~~~~iil   69 (174)
                      ||||+|+      ++.   ...+..+++.++++|+|+|+          ++..++  .....|+..+...  ..+.|++|
T Consensus        80 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~l~~~--~~~~piil  147 (228)
T 2qu8_A           80 IIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDI----------SEQCGLTIKEQINLFYSIKSV--FSNKSIVI  147 (228)
T ss_dssp             EEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEET----------TCTTSSCHHHHHHHHHHHHTC--C-CCCEEE
T ss_pred             EEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEec----------ccccCcchHHHHHHHHHHHHh--hcCCcEEE
Confidence            6999999      441   12345578899999999999          555554  3345667666543  34789999


Q ss_pred             EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099         70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT  149 (174)
Q Consensus        70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~  149 (174)
                      |+||+|+......  ...                         ..+.+..+...           ....+.++++||+++
T Consensus       148 v~nK~Dl~~~~~~--~~~-------------------------~~~~~~~~~~~-----------~~~~~~~~~~SA~~g  189 (228)
T 2qu8_A          148 GFNKIDKCNMDSL--SID-------------------------NKLLIKQILDN-----------VKNPIKFSSFSTLTG  189 (228)
T ss_dssp             EEECGGGCC--CC--CHH-------------------------HHHHHHHHHHH-----------CCSCEEEEECCTTTC
T ss_pred             EEeCcccCCchhh--HHH-------------------------HHHHHHHHHHh-----------cCCCceEEEEecccC
Confidence            9999999654211  000                         01112222110           012267889999999


Q ss_pred             hhHHHHHHHHHHHHHHhh
Q psy12099        150 ENIRRVFNDCRDIIQRMH  167 (174)
Q Consensus       150 ~~i~~~f~~~~~~i~~~~  167 (174)
                      .||.++|+++.+.+.+..
T Consensus       190 ~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          190 VGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             TTHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999999887653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.51  E-value=9.6e-14  Score=102.35  Aligned_cols=108  Identities=10%  Similarity=0.099  Sum_probs=74.9

Q ss_pred             CeeCCC----------CchhhhhHhhhhcCC---CEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE
Q psy12099          1 MFDVGG----------QRDERRKWIQCFNDV---TAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV   67 (174)
Q Consensus         1 iwD~~G----------q~~~r~~w~~y~~~~---~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i   67 (174)
                      +|||+|          ++.++.+|..|++++   +++|+|+|.          ++..+..+. .++..+ ..   .+.|+
T Consensus        73 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~-~~~~~~-~~---~~~p~  137 (195)
T 1svi_A           73 FVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDL----------RHAPSNDDV-QMYEFL-KY---YGIPV  137 (195)
T ss_dssp             EEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEET----------TSCCCHHHH-HHHHHH-HH---TTCCE
T ss_pred             EEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEEC----------CCCCCHHHH-HHHHHH-HH---cCCCE
Confidence            699999          999999999999887   999999999          555554442 222222 21   46899


Q ss_pred             EEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc
Q psy12099         68 ILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV  147 (174)
Q Consensus        68 ilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~  147 (174)
                      ++++||+|+..+...      ..                      ..+++.+    .+        +....+.++++||+
T Consensus       138 i~v~nK~Dl~~~~~~------~~----------------------~~~~~~~----~~--------~~~~~~~~~~~Sa~  177 (195)
T 1svi_A          138 IVIATKADKIPKGKW------DK----------------------HAKVVRQ----TL--------NIDPEDELILFSSE  177 (195)
T ss_dssp             EEEEECGGGSCGGGH------HH----------------------HHHHHHH----HH--------TCCTTSEEEECCTT
T ss_pred             EEEEECcccCChHHH------HH----------------------HHHHHHH----HH--------cccCCCceEEEEcc
Confidence            999999999754211      00                      0111111    11        11234678899999


Q ss_pred             cchhHHHHHHHHHHHH
Q psy12099        148 DTENIRRVFNDCRDII  163 (174)
Q Consensus       148 d~~~i~~~f~~~~~~i  163 (174)
                      ++.||+++|+++.+.+
T Consensus       178 ~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          178 TKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999998765

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.50  E-value=3.7e-14  Score=105.16  Aligned_cols=109  Identities=17%  Similarity=0.156  Sum_probs=83.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|+++++.+|..|+++++++++|+|+          ++..++.....|+..+... ...+.|+++++||+|+...+
T Consensus        82 i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~  150 (191)
T 1oix_A           82 IWDTAGLERYRAITSAYYRGAVGALLVYDI----------AKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLR  150 (191)
T ss_dssp             EEEECSCCSSSCCCHHHHTTCCEEEEEEET----------TCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGC
T ss_pred             EEECCCCcchhhhhHHHhhcCCEEEEEEEC----------cCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccccccc
Confidence            599999999999999999999999999999          7777887777777765432 23468999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.|..+..+             ..+.+..|||+|+.+++++|+.+.
T Consensus       151 ~~------------------------------~~~~a~~l~~~-------------~~~~~ld~Sald~~~v~~l~~~l~  187 (191)
T 1oix_A          151 AV------------------------------PTDEARAFAEK-------------NGLSFIETSALDSTNVEAAFQTIL  187 (191)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             cc------------------------------CHHHHHHHHHH-------------cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11                              12334444321             235667799999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       188 ~~i  190 (191)
T 1oix_A          188 TEI  190 (191)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.49  E-value=6.2e-14  Score=102.82  Aligned_cols=105  Identities=12%  Similarity=0.018  Sum_probs=75.2

Q ss_pred             CeeCCCCchhh------hhHhhhhc--CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDER------RKWIQCFN--DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r------~~w~~y~~--~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +|||+|++.++      .+|..|++  +++++++|+|.          ++   +.....|+..+..    .+.|++|++|
T Consensus        58 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~----------~~---~~~~~~~~~~~~~----~~~piilv~n  120 (188)
T 2wjg_A           58 VVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDA----------TA---LERNLYLTLQLME----MGANLLLALN  120 (188)
T ss_dssp             EEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEG----------GG---HHHHHHHHHHHHT----TTCCEEEEEE
T ss_pred             EEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecc----------hh---HHHHHHHHHHHHh----cCCCEEEEEE
Confidence            69999999885      57888886  59999999999          33   4445566666654    3689999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI  152 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i  152 (174)
                      |+|+..+...  ....                             ..+. +.            ..+.++++||+++.||
T Consensus       121 K~Dl~~~~~~--~~~~-----------------------------~~~~-~~------------~~~~~~~~Sa~~~~~v  156 (188)
T 2wjg_A          121 KMDLAKSLGI--EIDV-----------------------------DKLE-KI------------LGVKVVPLSAAKKMGI  156 (188)
T ss_dssp             CHHHHHHTTC--CCCH-----------------------------HHHH-HH------------HTSCEEECBGGGTBSH
T ss_pred             hhhccccccc--hHHH-----------------------------HHHH-HH------------hCCCeEEEEecCCCCH
Confidence            9999764321  1111                             1111 10            1245789999999999


Q ss_pred             HHHHHHHHHHHHHh
Q psy12099        153 RRVFNDCRDIIQRM  166 (174)
Q Consensus       153 ~~~f~~~~~~i~~~  166 (174)
                      .++|+++.+.+...
T Consensus       157 ~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          157 EELKKAISIAVKDK  170 (188)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887544

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.49  E-value=2.5e-15  Score=113.15  Aligned_cols=145  Identities=11%  Similarity=0.137  Sum_probs=87.1

Q ss_pred             CeeCCCCchhhhhHhhhhcC----CCEEEEEEeCCCccccccCCC-CcchHHHHHHHHHHHHcCC---CCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDERRKWIQCFND----VTAIIFVTACSSYNMVLREDP-TQNRLRESLDLFKSIWNNR---WLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~----~~~ii~v~d~s~~~~~~~e~~-~~~~~~~~~~~~~~i~~~~---~~~~~~iilv~N   72 (174)
                      +|||+|++.++..|..|+++    ++++|+|+|.          + +..++.....|+..++...   ...++|++|++|
T Consensus        59 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n  128 (218)
T 1nrj_B           59 LVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDS----------TVDPKKLTTTAEFLVDILSITESSCENGIDILIACN  128 (218)
T ss_dssp             EEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEET----------TSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred             EEECCCcHHHHHHHHHHHHhccccCCEEEEEEEC----------CCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEE
Confidence            59999999999999999988    8999999999          6 7788888888888887643   235799999999


Q ss_pred             CCchhhHHHhc-----cccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc
Q psy12099         73 KQDLLAEKVKA-----GKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV  147 (174)
Q Consensus        73 K~Dl~~~~~~~-----~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~  147 (174)
                      |+|+..+....     -...+..+...++....++||++|.+.  +...+...+... ....-.  .-...++....|+.
T Consensus       129 K~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~~--~~~~~~~~l~~~-~~f~~~--~~~~~v~~~~~s~~  203 (218)
T 1nrj_B          129 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEED--YAENTLDVLQST-DGFKFA--NLEASVVAFEGSIN  203 (218)
T ss_dssp             CTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC----------------CTTC-----CCCGG--GSSSCEEEEECBTT
T ss_pred             chHhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc--chhhhcccccCC-CCcccc--ccCCceEEEecccc
Confidence            99997542110     011233443444445567888877553  233333222221 111000  11234667777777


Q ss_pred             cchhHHHHHHHHHH
Q psy12099        148 DTENIRRVFNDCRD  161 (174)
Q Consensus       148 d~~~i~~~f~~~~~  161 (174)
                      .+ +|.++++++.+
T Consensus       204 ~~-~i~~~~~~~~~  216 (218)
T 1nrj_B          204 KR-KISQWREWIDE  216 (218)
T ss_dssp             TT-BCHHHHHHHHH
T ss_pred             CC-cHHHHHHHHHh
Confidence            66 68888888865

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.48  E-value=1.2e-13  Score=101.47  Aligned_cols=108  Identities=13%  Similarity=0.130  Sum_probs=73.4

Q ss_pred             CeeCCC----------CchhhhhHhhhhcCC---CEEEEEEeCCCccccccCCCCcch--HHHHHHHHHHHHcCCCCCCC
Q psy12099          1 MFDVGG----------QRDERRKWIQCFNDV---TAIIFVTACSSYNMVLREDPTQNR--LRESLDLFKSIWNNRWLRTI   65 (174)
Q Consensus         1 iwD~~G----------q~~~r~~w~~y~~~~---~~ii~v~d~s~~~~~~~e~~~~~~--~~~~~~~~~~i~~~~~~~~~   65 (174)
                      +|||+|          ++.++.+|..|++++   +++++|+|.          ++..+  ......|+...       +.
T Consensus        72 i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~----------~~~~~~~~~~~~~~~~~~-------~~  134 (195)
T 3pqc_A           72 FVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDG----------RIPPQDSDLMMVEWMKSL-------NI  134 (195)
T ss_dssp             EEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEET----------TSCCCHHHHHHHHHHHHT-------TC
T ss_pred             EEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecC----------CCCCCHHHHHHHHHHHHc-------CC
Confidence            699999          889999999999876   899999998          33322  22333343332       68


Q ss_pred             cEEEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecc
Q psy12099         66 SVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTC  145 (174)
Q Consensus        66 ~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~ts  145 (174)
                      |+++|+||+|+..+...  ..                          ..+.+.++.        .    ....+.++++|
T Consensus       135 p~i~v~nK~Dl~~~~~~--~~--------------------------~~~~~~~~~--------~----~~~~~~~~~~S  174 (195)
T 3pqc_A          135 PFTIVLTKMDKVKMSER--AK--------------------------KLEEHRKVF--------S----KYGEYTIIPTS  174 (195)
T ss_dssp             CEEEEEECGGGSCGGGH--HH--------------------------HHHHHHHHH--------H----SSCCSCEEECC
T ss_pred             CEEEEEEChhcCChHHH--HH--------------------------HHHHHHHHH--------h----hcCCCceEEEe
Confidence            99999999999643211  00                          111122221        1    11235788999


Q ss_pred             cccchhHHHHHHHHHHHHHH
Q psy12099        146 AVDTENIRRVFNDCRDIIQR  165 (174)
Q Consensus       146 A~d~~~i~~~f~~~~~~i~~  165 (174)
                      |+++.||+++|+++.+.+.+
T Consensus       175 a~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          175 SVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHHC-
T ss_pred             cCCCCCHHHHHHHHHHHhhc
Confidence            99999999999999987743

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.47  E-value=2e-14  Score=104.88  Aligned_cols=102  Identities=15%  Similarity=0.255  Sum_probs=70.4

Q ss_pred             CeeCCCCchhh---------hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEE
Q psy12099          1 MFDVGGQRDER---------RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFL   71 (174)
Q Consensus         1 iwD~~Gq~~~r---------~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~   71 (174)
                      +|||+|++++.         +.| .++++++++|+|+|.          ++..++. ...|+..+.+. ...++|++||+
T Consensus        56 l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~ad~~i~v~D~----------~~~~s~~-~~~~~~~~~~~-~~~~~p~ilv~  122 (172)
T 2gj8_A           56 IIDTAGLREASDEVERIGIERAW-QEIEQADRVLFMVDG----------TTTDAVD-PAEIWPEFIAR-LPAKLPITVVR  122 (172)
T ss_dssp             EEECCCCSCCSSHHHHHHHHHHH-HHHHTCSEEEEEEET----------TTCCCCS-HHHHCHHHHHH-SCTTCCEEEEE
T ss_pred             EEECCCcccchhHHHHHHHHHHH-HHHHhCCEEEEEEEC----------CCCCCHH-HHHHHHHHHHh-cccCCCEEEEE
Confidence            69999997532         123 478999999999999          5555544 34666665543 23578999999


Q ss_pred             eCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchh
Q psy12099         72 NKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTEN  151 (174)
Q Consensus        72 NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~  151 (174)
                      ||+|+..+..     ..                                             +......+++|||+++.|
T Consensus       123 NK~Dl~~~~~-----~~---------------------------------------------~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A          123 NKADITGETL-----GM---------------------------------------------SEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             ECHHHHCCCC-----EE---------------------------------------------EEETTEEEEECCTTTCTT
T ss_pred             ECccCCcchh-----hh---------------------------------------------hhccCCceEEEeCCCCCC
Confidence            9999853211     00                                             001125678999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy12099        152 IRRVFNDCRDIIQR  165 (174)
Q Consensus       152 i~~~f~~~~~~i~~  165 (174)
                      |+++|+++.+.+-.
T Consensus       153 v~~l~~~l~~~~~~  166 (172)
T 2gj8_A          153 VDVLRNHLKQSMGF  166 (172)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999877643

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.47  E-value=1.3e-14  Score=106.33  Aligned_cols=116  Identities=16%  Similarity=0.133  Sum_probs=76.2

Q ss_pred             CeeCCC-----------CchhhhhHhhhhcC-CCEEEEEEeCCCccccccCCCCcchHHHHHHHHHH---------HHcC
Q psy12099          1 MFDVGG-----------QRDERRKWIQCFND-VTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKS---------IWNN   59 (174)
Q Consensus         1 iwD~~G-----------q~~~r~~w~~y~~~-~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~---------i~~~   59 (174)
                      +|||+|           +++++..|..|+++ ++++++|+++          .+..++......|..         +...
T Consensus        48 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v----------~d~~s~~~~~~~~~~~~~~~~~~~~~~~  117 (190)
T 2cxx_A           48 IIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLV----------VDGKAAPEIIKRWEKRGEIPIDVEFYQF  117 (190)
T ss_dssp             EEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEE----------EETTHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             EEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEE----------EcchhhhhHHHhhhccCccHHHHHHHHH
Confidence            599999           89999999999987 8877777777          566666665322221         1111


Q ss_pred             CCCCCCcEEEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCC--Cc
Q psy12099         60 RWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDG--KH  137 (174)
Q Consensus        60 ~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~--~~  137 (174)
                      ....+.|+++++||+|+..+. .   ..++++...++                                     ..  ..
T Consensus       118 ~~~~~~piilv~nK~Dl~~~~-~---~~~~~~~~~~~-------------------------------------~~~~~~  156 (190)
T 2cxx_A          118 LRELDIPTIVAVNKLDKIKNV-Q---EVINFLAEKFE-------------------------------------VPLSEI  156 (190)
T ss_dssp             HHHTTCCEEEEEECGGGCSCH-H---HHHHHHHHHHT-------------------------------------CCGGGH
T ss_pred             HHhcCCceEEEeehHhccCcH-H---HHHHHHHHHhh-------------------------------------hhhhcc
Confidence            112478999999999997543 1   01111111111                                     00  00


Q ss_pred             ceeeeecccccchhHHHHHHHHHHHHHHhh
Q psy12099        138 YCYPHFTCAVDTENIRRVFNDCRDIIQRMH  167 (174)
Q Consensus       138 ~~~~~~tsA~d~~~i~~~f~~~~~~i~~~~  167 (174)
                      ...++++||+++.||+++|+++.+.+.+..
T Consensus       157 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          157 DKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             HHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             CCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence            134689999999999999999999887654

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.40  E-value=1.6e-12  Score=97.81  Aligned_cols=117  Identities=9%  Similarity=0.027  Sum_probs=74.2

Q ss_pred             CeeCCC----------CchhhhhHhhhhcC---CCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE
Q psy12099          1 MFDVGG----------QRDERRKWIQCFND---VTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV   67 (174)
Q Consensus         1 iwD~~G----------q~~~r~~w~~y~~~---~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i   67 (174)
                      ||||+|          ++.++.++..|++.   ++++|+|+|.          ++.-+ .....++..+..    .+.|+
T Consensus        83 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~----------~~~~~-~~~~~~~~~l~~----~~~p~  147 (223)
T 4dhe_A           83 LVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDA----------RRPLT-ELDRRMIEWFAP----TGKPI  147 (223)
T ss_dssp             EEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEET----------TSCCC-HHHHHHHHHHGG----GCCCE
T ss_pred             EEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeC----------CCCCC-HHHHHHHHHHHh----cCCCE
Confidence            699999          67778888899887   6779999999          33322 222334444332    46899


Q ss_pred             EEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc
Q psy12099         68 ILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV  147 (174)
Q Consensus        68 ilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~  147 (174)
                      ++|+||+|+......  .                              .....+.+.+......  .......++++||+
T Consensus       148 i~v~nK~Dl~~~~~~--~------------------------------~~~~~~~~~l~~~~~~--~~~~~~~~~~~SA~  193 (223)
T 4dhe_A          148 HSLLTKCDKLTRQES--I------------------------------NALRATQKSLDAYRDA--GYAGKLTVQLFSAL  193 (223)
T ss_dssp             EEEEECGGGSCHHHH--H------------------------------HHHHHHHHHHHHHHHH--TCCSCEEEEEEBTT
T ss_pred             EEEEeccccCChhhH--H------------------------------HHHHHHHHHHHhhhhc--ccCCCCeEEEeecC
Confidence            999999999754321  0                              0111111111111000  01234678899999


Q ss_pred             cchhHHHHHHHHHHHHHHh
Q psy12099        148 DTENIRRVFNDCRDIIQRM  166 (174)
Q Consensus       148 d~~~i~~~f~~~~~~i~~~  166 (174)
                      ++.||.++|+++.+.+...
T Consensus       194 ~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          194 KRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             TTBSHHHHHHHHHHHHC--
T ss_pred             CCcCHHHHHHHHHHhcCcc
Confidence            9999999999999887543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.39  E-value=6.6e-13  Score=104.30  Aligned_cols=97  Identities=20%  Similarity=0.192  Sum_probs=67.4

Q ss_pred             CeeCCCCchhh------hhHhhhhc--CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDER------RKWIQCFN--DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r------~~w~~y~~--~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +|||+|+++++      .++..|+.  +++++|+|+|.          ++.++   ...|...+..    .+.|++|++|
T Consensus        53 l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~----------t~~e~---~~~~~~~l~~----~~~p~ilv~N  115 (272)
T 3b1v_A           53 IQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDA----------TNLER---NLYLTTQLIE----TGIPVTIALN  115 (272)
T ss_dssp             EEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEG----------GGHHH---HHHHHHHHHH----TCSCEEEEEE
T ss_pred             EEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecC----------CchHh---HHHHHHHHHh----cCCCEEEEEE
Confidence            69999999987      67888886  69999999999          45433   3455555543    3689999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIR  116 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~  116 (174)
                      |+|+...+..  ......+...++.+..++||++|.|.++.++.
T Consensus       116 K~Dl~~~~~~--~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~  157 (272)
T 3b1v_A          116 MIDVLDGQGK--KINVDKLSYHLGVPVVATSALKQTGVDQVVKK  157 (272)
T ss_dssp             CHHHHHHTTC--CCCHHHHHHHHTSCEEECBTTTTBSHHHHHHH
T ss_pred             ChhhCCcCCc--HHHHHHHHHHcCCCEEEEEccCCCCHHHHHHH
Confidence            9999765422  23444444445555667777777775443333

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.39  E-value=3.5e-13  Score=112.79  Aligned_cols=113  Identities=13%  Similarity=0.130  Sum_probs=76.7

Q ss_pred             CeeCCC----------CchhhhhHhh-hhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099          1 MFDVGG----------QRDERRKWIQ-CFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL   69 (174)
Q Consensus         1 iwD~~G----------q~~~r~~w~~-y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil   69 (174)
                      ||||+|          +++|+.++.. |++.++++|+|+|.          ++.-. .....++..+..    .+.|++|
T Consensus       247 l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~----------~~~~~-~~~~~~~~~~~~----~~~~~il  311 (456)
T 4dcu_A          247 IVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDG----------EEGII-EQDKRIAGYAHE----AGKAVVI  311 (456)
T ss_dssp             ETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEET----------TTCCC-HHHHHHHHHHHH----TTCEEEE
T ss_pred             EEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeC----------CCCcC-HHHHHHHHHHHH----cCCCEEE
Confidence            699999          8999998775 78999999999999          33222 233344444433    4689999


Q ss_pred             EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099         70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT  149 (174)
Q Consensus        70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~  149 (174)
                      ++||+|+..+..                              ...+++.+++.+.+...        ....++++||++|
T Consensus       312 v~NK~Dl~~~~~------------------------------~~~~~~~~~~~~~~~~~--------~~~~~~~~SA~~g  353 (456)
T 4dcu_A          312 VVNKWDAVDKDE------------------------------STMKEFEENIRDHFQFL--------DYAPILFMSALTK  353 (456)
T ss_dssp             EEECGGGSCCCS------------------------------SHHHHHHHHHHHHCGGG--------TTSCEEECCTTTC
T ss_pred             EEEChhcCCCch------------------------------HHHHHHHHHHHHhcccC--------CCCCEEEEcCCCC
Confidence            999999864321                              12333444444332211        1245778999999


Q ss_pred             hhHHHHHHHHHHHHHHh
Q psy12099        150 ENIRRVFNDCRDIIQRM  166 (174)
Q Consensus       150 ~~i~~~f~~~~~~i~~~  166 (174)
                      .||.++|+.+.+.+.+.
T Consensus       354 ~gv~~l~~~i~~~~~~~  370 (456)
T 4dcu_A          354 KRIHTLMPAIIKASENH  370 (456)
T ss_dssp             TTGGGHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHh
Confidence            99999999888877544

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.36  E-value=1.6e-12  Score=101.19  Aligned_cols=99  Identities=15%  Similarity=0.106  Sum_probs=68.2

Q ss_pred             CeeCCCCchhhhhH------hhhh--cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDERRKW------IQCF--NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r~~w------~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      ||||+|+.+++..|      ..|+  ++++++|+|+|.          ++.++   ...|+..+..    .+.|++|++|
T Consensus        56 l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~----------t~~~~---~~~~~~~l~~----~~~pvilv~N  118 (258)
T 3a1s_A           56 LIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADS----------VNPEQ---SLYLLLEILE----MEKKVILAMT  118 (258)
T ss_dssp             EEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEET----------TSCHH---HHHHHHHHHT----TTCCEEEEEE
T ss_pred             EEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCC----------Cchhh---HHHHHHHHHh----cCCCEEEEEE
Confidence            69999999988644      6676  589999999999          55443   3446666654    2689999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAK  118 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~  118 (174)
                      |+|+...+-.  .....++...++.+..++||++|.|.++.++.+.
T Consensus       119 K~Dl~~~~~i--~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~  162 (258)
T 3a1s_A          119 AIDEAKKTGM--KIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIV  162 (258)
T ss_dssp             CHHHHHHTTC--CBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHH
T ss_pred             CcCCCCccch--HHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHH
Confidence            9999765432  2344555555555666777777777554444443

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.35  E-value=6.2e-13  Score=113.29  Aligned_cols=105  Identities=14%  Similarity=0.173  Sum_probs=71.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||+.++..+..|+++++++|+|+|++          +.++   ...|...+....  .+.|++||+||+|+..+.
T Consensus       102 i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s----------~~~~---~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~  166 (535)
T 3dpu_A          102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSR----------TDSN---KHYWLRHIEKYG--GKSPVIVVMNKIDENPSY  166 (535)
T ss_dssp             EECCCSCCTTTTTCHHHHHSSEEEEEEECGG----------GGGG---HHHHHHHHHHHS--SSCCEEEEECCTTTCTTC
T ss_pred             EEECCcHHHHHHHHHHHccCCcEEEEEEeCC----------Cchh---HHHHHHHHHHhC--CCCCEEEEEECCCccccc
Confidence            6999999999999999999999999999994          3333   345555554332  368999999999997543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFI  121 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i  121 (174)
                      .. ....+.+.++..+.+..++||++|.|.++.++...+.+
T Consensus       167 ~v-~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~  206 (535)
T 3dpu_A          167 NI-EQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAV  206 (535)
T ss_dssp             CC-CHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHH
T ss_pred             cc-CHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHH
Confidence            11 02345566666666667778888877776666555443

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.34  E-value=9.4e-13  Score=102.50  Aligned_cols=90  Identities=19%  Similarity=0.131  Sum_probs=57.7

Q ss_pred             CeeCCCCchhhh----------hHhhhh--cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEE
Q psy12099          1 MFDVGGQRDERR----------KWIQCF--NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVI   68 (174)
Q Consensus         1 iwD~~Gq~~~r~----------~w~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~ii   68 (174)
                      ||||+|+.+++.          ++..|+  ++++++|+|+|.          ++.++.   ..+...+..    .+.|++
T Consensus        52 lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDa----------s~~~~~---~~l~~~l~~----~~~pvi  114 (256)
T 3iby_A           52 ITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDA----------CHLERH---LYLTSQLFE----LGKPVV  114 (256)
T ss_dssp             EEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEG----------GGHHHH---HHHHHHHTT----SCSCEE
T ss_pred             EEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeC----------CCchhH---HHHHHHHHH----cCCCEE
Confidence            699999988875          677888  999999999999          554433   333334332    268999


Q ss_pred             EEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCC
Q psy12099         69 LFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPG  109 (174)
Q Consensus        69 lv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g  109 (174)
                      +++||+|+...+-.  ...+..+....+.+..++||++|.|
T Consensus       115 lv~NK~Dl~~~~~~--~~~~~~l~~~lg~~vi~~SA~~g~g  153 (256)
T 3iby_A          115 VALNMMDIAEHRGI--SIDTEKLESLLGCSVIPIQAHKNIG  153 (256)
T ss_dssp             EEEECHHHHHHTTC--EECHHHHHHHHCSCEEECBGGGTBS
T ss_pred             EEEEChhcCCcCCc--HHHHHHHHHHcCCCEEEEECCCCCC
Confidence            99999999765422  2233333333333344455555544

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.34  E-value=2e-12  Score=101.47  Aligned_cols=63  Identities=19%  Similarity=0.188  Sum_probs=46.1

Q ss_pred             CeeCCCCchhh----------hhHhhhh--cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEE
Q psy12099          1 MFDVGGQRDER----------RKWIQCF--NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVI   68 (174)
Q Consensus         1 iwD~~Gq~~~r----------~~w~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~ii   68 (174)
                      +|||+|+.+++          .++..|+  ++++++|+|+|.          ++.++..   .+...+...    +.|++
T Consensus        54 liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~----------~~~~~~~---~~~~~l~~~----~~p~i  116 (274)
T 3i8s_A           54 LVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDA----------SNLERNL---YLTLQLLEL----GIPCI  116 (274)
T ss_dssp             EEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEG----------GGHHHHH---HHHHHHHHH----TCCEE
T ss_pred             EEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecC----------CChHHHH---HHHHHHHhc----CCCEE
Confidence            69999998877          4456665  799999999999          5544433   333333322    68999


Q ss_pred             EEEeCCchhhHH
Q psy12099         69 LFLNKQDLLAEK   80 (174)
Q Consensus        69 lv~NK~Dl~~~~   80 (174)
                      +++||+|+....
T Consensus       117 vv~NK~Dl~~~~  128 (274)
T 3i8s_A          117 VALNMLDIAEKQ  128 (274)
T ss_dssp             EEEECHHHHHHT
T ss_pred             EEEECccchhhh
Confidence            999999997653

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.33  E-value=1.1e-12  Score=109.28  Aligned_cols=112  Identities=13%  Similarity=0.143  Sum_probs=74.9

Q ss_pred             CeeCCCC----------chhhhhHh-hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099          1 MFDVGGQ----------RDERRKWI-QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL   69 (174)
Q Consensus         1 iwD~~Gq----------~~~r~~w~-~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil   69 (174)
                      ||||+|+          |+|+.++. .+++.++++|+|+|.          ++..+..+. .|+..+..    .+.|++|
T Consensus       227 l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~----------~~~~s~~~~-~~~~~~~~----~~~~iii  291 (436)
T 2hjg_A          227 IVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDG----------EEGIIEQDK-RIAGYAHE----AGKAVVI  291 (436)
T ss_dssp             ETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEET----------TTCCCHHHH-HHHHHHHH----TTCEEEE
T ss_pred             EEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcC----------CcCCcHHHH-HHHHHHHH----cCCcEEE
Confidence            6999998          77777766 488999999999999          565555443 56665543    3689999


Q ss_pred             EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099         70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT  149 (174)
Q Consensus        70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~  149 (174)
                      ++||+|+..+...                              ..++..+.+.+.+...        ....++++||++|
T Consensus       292 v~NK~Dl~~~~~~------------------------------~~~~~~~~~~~~l~~~--------~~~~~~~~SA~tg  333 (436)
T 2hjg_A          292 VVNKWDAVDKDES------------------------------TMKEFEENIRDHFQFL--------DYAPILFMSALTK  333 (436)
T ss_dssp             EEECGGGSCCCTT------------------------------HHHHHHHHHHHHCGGG--------TTSCEEECCTTTC
T ss_pred             EEECccCCCcchH------------------------------HHHHHHHHHHHhcccC--------CCCCEEEEecccC
Confidence            9999998653210                              1112222222222111        1245678888888


Q ss_pred             hhHHHHHHHHHHHHHH
Q psy12099        150 ENIRRVFNDCRDIIQR  165 (174)
Q Consensus       150 ~~i~~~f~~~~~~i~~  165 (174)
                      .||.++|+.+.+.+.+
T Consensus       334 ~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          334 KRIHTLMPAIIKASEN  349 (436)
T ss_dssp             TTGGGHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            8888888888776654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.32  E-value=4e-12  Score=101.34  Aligned_cols=99  Identities=18%  Similarity=0.191  Sum_probs=64.6

Q ss_pred             CeeCCCCch----------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEE
Q psy12099          1 MFDVGGQRD----------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILF   70 (174)
Q Consensus         1 iwD~~Gq~~----------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv   70 (174)
                      +|||+|+..          +...+..++++++++|+|+|.          ++..+..+...|+..+..    .+.|+++|
T Consensus        63 lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~----------~~~~~~~~~~~~~~~l~~----~~~pvilV  128 (308)
T 3iev_A           63 FLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDA----------TEGWRPRDEEIYQNFIKP----LNKPVIVV  128 (308)
T ss_dssp             EEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEET----------TTBSCHHHHHHHHHHTGG----GCCCEEEE
T ss_pred             EEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeC----------CCCCCchhHHHHHHHHHh----cCCCEEEE
Confidence            699999954          447888999999999999999          666666665555666543    36899999


Q ss_pred             EeCCchh-hHHHhccccchhhhhhccC--CCCCCCCCCCCCCCChHHH
Q psy12099         71 LNKQDLL-AEKVKAGKSRLEDYFQEFT--RYQTPLDATPDPGEDPIVI  115 (174)
Q Consensus        71 ~NK~Dl~-~~~~~~~~~~l~~~~~~~~--~~~~~~~a~~~~g~~~~~~  115 (174)
                      +||+|+. .....  ...+..+...++  ....++||++|.|.++.++
T Consensus       129 ~NK~Dl~~~~~~~--~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~  174 (308)
T 3iev_A          129 INKIDKIGPAKNV--LPLIDEIHKKHPELTEIVPISALKGANLDELVK  174 (308)
T ss_dssp             EECGGGSSSGGGG--HHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHH
T ss_pred             EECccCCCCHHHH--HHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHH
Confidence            9999997 32211  112222222222  2345666666666443333

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.29  E-value=9.2e-12  Score=102.66  Aligned_cols=112  Identities=15%  Similarity=0.086  Sum_probs=77.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++.|...+..++..++++|+|+|.          ++..++....+++..+...   ...|+++++||+|+....
T Consensus        79 iiDtPGh~~~~~~~~~~~~~~D~~ilVvda----------~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~  145 (403)
T 3sjy_A           79 FIDAPGHEVLMATMLSGAALMDGAILVVAA----------NEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKE  145 (403)
T ss_dssp             EEECCCCGGGHHHHHHHHTTCSEEEEEEET----------TSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHH
T ss_pred             EEECCCcHHHHHHHHHHHhhCCEEEEEEEC----------CCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchH
Confidence            699999999999999999999999999999          5555556666666544321   235899999999997543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  ..                          ..++..+++    ..      .....+.++.+||+++.||.++|+.+.
T Consensus       146 ~~--~~--------------------------~~~~i~~~l----~~------~~~~~~~ii~vSA~~g~gi~~L~~~l~  187 (403)
T 3sjy_A          146 EA--LS--------------------------QYRQIKQFT----KG------TWAENVPIIPVSALHKINIDSLIEGIE  187 (403)
T ss_dssp             HH--HH--------------------------HHHHHHHHH----TT------STTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             HH--HH--------------------------HHHHHHHHH----Hh------hCCCCCEEEEEECCCCcChHHHHHHHH
Confidence            11  00                          011111111    00      111245678999999999999999988


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       188 ~~l  190 (403)
T 3sjy_A          188 EYI  190 (403)
T ss_dssp             HHS
T ss_pred             HhC
Confidence            755

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.27  E-value=2.2e-11  Score=95.06  Aligned_cols=96  Identities=20%  Similarity=0.212  Sum_probs=66.3

Q ss_pred             CeeCCCCchhhh------hHhhhh--cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDERR------KWIQCF--NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r~------~w~~y~--~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      ||||+|+.++..      ++..|+  .+++++|+|+|.          ++.   .....++..+...   ...|+++++|
T Consensus        54 l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~----------~~~---~~~~~~~~~~~~~---~~~p~ilv~N  117 (271)
T 3k53_A           54 VVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDS----------TCL---MRNLFLTLELFEM---EVKNIILVLN  117 (271)
T ss_dssp             EEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEG----------GGH---HHHHHHHHHHHHT---TCCSEEEEEE
T ss_pred             EEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecC----------Ccc---hhhHHHHHHHHhc---CCCCEEEEEE
Confidence            699999999887      788888  789999999999          443   4455666666543   2389999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIV  114 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~  114 (174)
                      |+|+...+-.  ......+...++.+..|+||++|.|.++.+
T Consensus       118 K~Dl~~~~~~--~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~  157 (271)
T 3k53_A          118 KFDLLKKKGA--KIDIKKMRKELGVPVIPTNAKKGEGVEELK  157 (271)
T ss_dssp             CHHHHHHHTC--CCCHHHHHHHHSSCEEECBGGGTBTHHHHH
T ss_pred             ChhcCccccc--HHHHHHHHHHcCCcEEEEEeCCCCCHHHHH
Confidence            9999865433  233444444444555566666666643333

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.26  E-value=2.2e-11  Score=96.84  Aligned_cols=92  Identities=14%  Similarity=0.141  Sum_probs=57.9

Q ss_pred             CeeCCCCch--------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRD--------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~--------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +|||+|+..        +...+..++++++++|+|+|.          ++.-+..  ..|+...+... ..+.|+++|+|
T Consensus        59 l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~----------~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~N  125 (301)
T 1wf3_A           59 FVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDL----------RHPPTPE--DELVARALKPL-VGKVPILLVGN  125 (301)
T ss_dssp             EEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEET----------TSCCCHH--HHHHHHHHGGG-TTTSCEEEEEE
T ss_pred             EecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEEC----------CCCCChH--HHHHHHHHHhh-cCCCCEEEEEE
Confidence            699999976        667778899999999999999          4432222  23443333332 24789999999


Q ss_pred             CCchhhHHH-hccccchhhhhhccCCCCCCCCCCCCCC
Q psy12099         73 KQDLLAEKV-KAGKSRLEDYFQEFTRYQTPLDATPDPG  109 (174)
Q Consensus        73 K~Dl~~~~~-~~~~~~l~~~~~~~~~~~~~~~a~~~~g  109 (174)
                      |+|+..+.. .  ...+++++ .+ ....|+||++|.|
T Consensus       126 K~Dl~~~~~~~--~~~~~~~~-~~-~~~~~iSA~~g~g  159 (301)
T 1wf3_A          126 KLDAAKYPEEA--MKAYHELL-PE-AEPRMLSALDERQ  159 (301)
T ss_dssp             CGGGCSSHHHH--HHHHHHTS-TT-SEEEECCTTCHHH
T ss_pred             CcccCCchHHH--HHHHHHhc-Cc-CcEEEEeCCCCCC
Confidence            999974321 1  11222221 11 1245677776655

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.25  E-value=1.8e-12  Score=95.37  Aligned_cols=69  Identities=19%  Similarity=0.328  Sum_probs=59.6

Q ss_pred             CeeCCCCchhhhhHhhhhcC----CCEEEEEEeCCCccccccCCC-CcchHHHHHHHHHHHHcCCC---CCCCcEEEEEe
Q psy12099          1 MFDVGGQRDERRKWIQCFND----VTAIIFVTACSSYNMVLREDP-TQNRLRESLDLFKSIWNNRW---LRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~----~~~ii~v~d~s~~~~~~~e~~-~~~~~~~~~~~~~~i~~~~~---~~~~~iilv~N   72 (174)
                      +|||+|++.++..|..|+++    ++++|+|+|+          + +..++.....|+..++....   ..+.|++||+|
T Consensus        95 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n  164 (193)
T 2ged_A           95 LVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDS----------TVDPKKLTTTAEFLVDILSITESSCENGIDILIACN  164 (193)
T ss_dssp             EEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEET----------TCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred             EEECCCCchHHHHHHHHHHhhcccCCEEEEEEEC----------CCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEE
Confidence            69999999999999999987    8999999999          6 78889998899888875432   25789999999


Q ss_pred             CCchhhH
Q psy12099         73 KQDLLAE   79 (174)
Q Consensus        73 K~Dl~~~   79 (174)
                      |+|+..+
T Consensus       165 K~Dl~~~  171 (193)
T 2ged_A          165 KSELFTA  171 (193)
T ss_dssp             CTTSTTC
T ss_pred             chHhcCC
Confidence            9999754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.24  E-value=2.9e-11  Score=100.69  Aligned_cols=64  Identities=19%  Similarity=0.284  Sum_probs=46.1

Q ss_pred             CeeCCCCch---------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEE
Q psy12099          1 MFDVGGQRD---------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFL   71 (174)
Q Consensus         1 iwD~~Gq~~---------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~   71 (174)
                      ||||||++.         ++..+..|+++++++|||+|.          ++.-+..+  .++..+++.   .+.|++|++
T Consensus        53 l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~----------~~~~~~~d--~~i~~~l~~---~~~p~ilv~  117 (439)
T 1mky_A           53 LVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDG----------KRGITKED--ESLADFLRK---STVDTILVA  117 (439)
T ss_dssp             EEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEET----------TTCCCHHH--HHHHHHHHH---HTCCEEEEE
T ss_pred             EEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEEC----------CCCCCHHH--HHHHHHHHH---cCCCEEEEE
Confidence            699999764         577899999999999999999          44322221  223333332   268999999


Q ss_pred             eCCchhhH
Q psy12099         72 NKQDLLAE   79 (174)
Q Consensus        72 NK~Dl~~~   79 (174)
                      ||+|+...
T Consensus       118 NK~D~~~~  125 (439)
T 1mky_A          118 NKAENLRE  125 (439)
T ss_dssp             ESCCSHHH
T ss_pred             eCCCCccc
Confidence            99998653

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.21  E-value=1.1e-11  Score=105.71  Aligned_cols=64  Identities=14%  Similarity=0.219  Sum_probs=50.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+||+.|..++..+++.++++|+|+|.          ++. .+....+.+..+..    .++|+++++||+|+...
T Consensus        56 ~iDTPGhe~f~~~~~~~~~~aD~vILVVDa----------~dg-~~~qt~e~l~~~~~----~~vPiIVViNKiDl~~~  119 (537)
T 3izy_P           56 FLDTPGHAAFSAMRARGTQVTDIVILVVAA----------DDG-VMKQTVESIQHAKD----AHVPIVLAINKCDKAEA  119 (537)
T ss_dssp             CEECSSSCCTTTSBBSSSBSBSSCEEECBS----------SSC-CCHHHHHHHHHHHT----TTCCEEECCBSGGGTTT
T ss_pred             EEECCChHHHHHHHHHHHccCCEEEEEEEC----------CCC-ccHHHHHHHHHHHH----cCCcEEEEEeccccccc
Confidence            799999999999999999999999999999          332 23344455554432    36799999999999754

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.19  E-value=4.2e-11  Score=99.67  Aligned_cols=64  Identities=20%  Similarity=0.257  Sum_probs=43.6

Q ss_pred             CeeCCCCc--------hhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQR--------DERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~--------~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      ||||+|++        .++..|..++++++++|||+|.          .+..+..+  .++..++..   .+.|++|++|
T Consensus        55 l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~----------~~~~~~~d--~~~~~~l~~---~~~pvilv~N  119 (436)
T 2hjg_A           55 LIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNG----------REGVTAAD--EEVAKILYR---TKKPVVLAVN  119 (436)
T ss_dssp             EEC---------CHHHHHHHHHHHHHHHCSEEEEEEET----------TTCSCHHH--HHHHHHHTT---CCSCEEEEEE
T ss_pred             EEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeC----------CCCCCHHH--HHHHHHHHH---cCCCEEEEEE
Confidence            69999996        7899999999999999999999          44433332  344455543   4689999999


Q ss_pred             CCchhhH
Q psy12099         73 KQDLLAE   79 (174)
Q Consensus        73 K~Dl~~~   79 (174)
                      |+|+...
T Consensus       120 K~D~~~~  126 (436)
T 2hjg_A          120 KLDNTEM  126 (436)
T ss_dssp             CCCC---
T ss_pred             CccCccc
Confidence            9998754

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.18  E-value=4e-11  Score=100.96  Aligned_cols=63  Identities=17%  Similarity=0.170  Sum_probs=37.8

Q ss_pred             CeeCCCCchhhhhH--------hhhhcCCCEEEEEEeCCCccccccCCCCcchHH---HHHHHHHHHHcCCCCCCCcEEE
Q psy12099          1 MFDVGGQRDERRKW--------IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLR---ESLDLFKSIWNNRWLRTISVIL   69 (174)
Q Consensus         1 iwD~~Gq~~~r~~w--------~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~---~~~~~~~~i~~~~~~~~~~iil   69 (174)
                      +|||+|++.++..|        ..++++++++|+|+|.          ++..++.   ....++..+      .+.|+++
T Consensus       285 liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~----------s~~~s~~~~~~~~~~l~~l------~~~piIv  348 (476)
T 3gee_A          285 LTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDL----------GTERLDDELTEIRELKAAH------PAAKFLT  348 (476)
T ss_dssp             EEC--------------------CCCSSCSEEEEEEET----------TTCSSGGGHHHHHHHHHHC------TTSEEEE
T ss_pred             EEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEEC----------CCCcchhhhHHHHHHHHhc------CCCCEEE
Confidence            69999998877554        4578999999999999          4554443   344444432      2689999


Q ss_pred             EEeCCchhhH
Q psy12099         70 FLNKQDLLAE   79 (174)
Q Consensus        70 v~NK~Dl~~~   79 (174)
                      |+||+|+...
T Consensus       349 V~NK~Dl~~~  358 (476)
T 3gee_A          349 VANKLDRAAN  358 (476)
T ss_dssp             EEECTTSCTT
T ss_pred             EEECcCCCCc
Confidence            9999999754

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.17  E-value=4.1e-11  Score=99.50  Aligned_cols=101  Identities=20%  Similarity=0.175  Sum_probs=73.5

Q ss_pred             CeeCCCCchhhhh-------HhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q psy12099          1 MFDVGGQRDERRK-------WIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNK   73 (174)
Q Consensus         1 iwD~~Gq~~~r~~-------w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK   73 (174)
                      +|||+|++.+..+       +..++++++++|+|+|.          .......   .|+..+...    +.|+++|+||
T Consensus        87 liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~----------~~~~~~~---~~l~~l~~~----~~piIvV~NK  149 (423)
T 3qq5_A           87 LVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS----------APTPYED---DVVNLFKEM----EIPFVVVVNK  149 (423)
T ss_dssp             EEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS----------SCCHHHH---HHHHHHHHT----TCCEEEECCC
T ss_pred             EEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC----------CChHHHH---HHHHHHHhc----CCCEEEEEeC
Confidence            6999999877654       56689999999999998          3443333   344443322    6899999999


Q ss_pred             CchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHH
Q psy12099         74 QDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFI  121 (174)
Q Consensus        74 ~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i  121 (174)
                      +|+..+...   ...+++...++....++||++|.|.++.++...+.+
T Consensus       150 ~Dl~~~~~~---~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l  194 (423)
T 3qq5_A          150 IDVLGEKAE---ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL  194 (423)
T ss_dssp             CTTTTCCCT---HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred             cCCCCccHH---HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            999765321   233445556667789999999999988887776654

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.16  E-value=1.8e-10  Score=93.39  Aligned_cols=109  Identities=17%  Similarity=0.269  Sum_probs=75.6

Q ss_pred             CeeCCCCchhh---------hhHhhhhcCCCEEEEEEeCCCccccccCCCCcc--hHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099          1 MFDVGGQRDER---------RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQN--RLRESLDLFKSIWNNRWLRTISVIL   69 (174)
Q Consensus         1 iwD~~Gq~~~r---------~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~--~~~~~~~~~~~i~~~~~~~~~~iil   69 (174)
                      +|||+|+....         .....+...++++|+|+|+          ++..  ++.+...|+..+....  .+.|+++
T Consensus       218 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~----------s~~~~~~~~~~~~~~~~i~~~~--~~~piil  285 (357)
T 2e87_A          218 IIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDP----------SEHCGFPLEEQIHLFEEVHGEF--KDLPFLV  285 (357)
T ss_dssp             EEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECT----------TCTTSSCHHHHHHHHHHHHHHT--TTSCEEE
T ss_pred             EEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeC----------CccccCCHHHHHHHHHHHHHhc--CCCCEEE
Confidence            69999985431         2223455689999999999          5554  6677778888776532  2789999


Q ss_pred             EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc
Q psy12099         70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT  149 (174)
Q Consensus        70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~  149 (174)
                      ++||+|+.....                                ++++.+++..             ..+.++++||++|
T Consensus       286 V~NK~Dl~~~~~--------------------------------~~~~~~~~~~-------------~~~~~~~iSA~~g  320 (357)
T 2e87_A          286 VINKIDVADEEN--------------------------------IKRLEKFVKE-------------KGLNPIKISALKG  320 (357)
T ss_dssp             EECCTTTCCHHH--------------------------------HHHHHHHHHH-------------TTCCCEECBTTTT
T ss_pred             EEECcccCChHH--------------------------------HHHHHHHHHh-------------cCCCeEEEeCCCC
Confidence            999999865321                                1112222210             1245778999999


Q ss_pred             hhHHHHHHHHHHHHHHh
Q psy12099        150 ENIRRVFNDCRDIIQRM  166 (174)
Q Consensus       150 ~~i~~~f~~~~~~i~~~  166 (174)
                      +||+++|+++.+.+...
T Consensus       321 ~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          321 TGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             BTHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHH
Confidence            99999999999887543

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.16  E-value=7.3e-11  Score=97.42  Aligned_cols=112  Identities=18%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||+.|.+.+......+|++|+|+|.          ++......+.+.+..+..   ....|+++++||+|+....
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda----------~~g~~~~qt~e~l~~~~~---l~~~~iivv~NK~Dl~~~~  151 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAA----------NEPCPQPQTKEHLMALEI---LGIDKIIIVQNKIDLVDEK  151 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEET----------TSCSSCHHHHHHHHHHHH---TTCCCEEEEEECTTSSCTT
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEEC----------CCCCCCchhHHHHHHHHH---cCCCeEEEEEEccCCCCHH
Confidence            699999999999888888899999999999          432212222233222211   1235899999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                            .+.++++.+++..          .....+.++.+||+++.||.++|+.+.
T Consensus       152 ~~----------------------------~~~~~~i~~~l~~----------~~~~~~~~i~vSA~~g~gi~~L~~~l~  193 (408)
T 1s0u_A          152 QA----------------------------EENYEQIKEFVKG----------TIAENAPIIPISAHHEANIDVLLKAIQ  193 (408)
T ss_dssp             TT----------------------------TTHHHHHHHHHTT----------STTTTCCEEEC------CHHHHHHHHH
T ss_pred             HH----------------------------HHHHHHHHHHHhh----------cCCCCCeEEEeeCCCCCCHHHHHHHHH
Confidence            11                            0122333333211          011235678899999999999999988


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       194 ~~i  196 (408)
T 1s0u_A          194 DFI  196 (408)
T ss_dssp             HHS
T ss_pred             HhC
Confidence            754

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.16  E-value=5.4e-11  Score=102.61  Aligned_cols=138  Identities=9%  Similarity=-0.025  Sum_probs=78.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||+.|...+..+++.++++|+|+|.          ++.- ...+.+.+..+..    .++|+++++||+|+....
T Consensus        74 liDTPGhe~F~~~~~r~~~~aD~aILVvDa----------~~Gv-~~qT~e~l~~l~~----~~vPiIVViNKiDl~~~~  138 (594)
T 1g7s_A           74 FIDTPGHEAFTTLRKRGGALADLAILIVDI----------NEGF-KPQTQEALNILRM----YRTPFVVAANKIDRIHGW  138 (594)
T ss_dssp             EECCCTTSCCTTSBCSSSBSCSEEEEEEET----------TTCC-CHHHHHHHHHHHH----TTCCEEEEEECGGGSTTC
T ss_pred             EEECCCcHHHHHHHHHHHhhCCEEEEEEEC----------CCCc-cHhHHHHHHHHHH----cCCeEEEEeccccccccc
Confidence            699999999999999999999999999999          4410 1122223333222    468999999999996431


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhc------CCCCCcceeeeecccccchhHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTA------SGDGKHYCYPHFTCAVDTENIRR  154 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~------~~~~~~~~~~~~tsA~d~~~i~~  154 (174)
                      ..   .....++.        ++++.+.+..+.+.+...-+...+....-.      .......+.++.+||++|.||.+
T Consensus       139 ~~---~~~~~~~e--------~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~e  207 (594)
T 1g7s_A          139 RV---HEGRPFME--------TFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPE  207 (594)
T ss_dssp             CC---CTTCCHHH--------HHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHH
T ss_pred             cc---ccCCchHH--------HHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchh
Confidence            10   00000111        111111111112222111122222211000      00012446788999999999999


Q ss_pred             HHHHHHHHHH
Q psy12099        155 VFNDCRDIIQ  164 (174)
Q Consensus       155 ~f~~~~~~i~  164 (174)
                      +++++...+.
T Consensus       208 Ll~~I~~~~~  217 (594)
T 1g7s_A          208 LLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhhcc
Confidence            9999987664

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.15  E-value=7.8e-11  Score=97.11  Aligned_cols=63  Identities=16%  Similarity=0.286  Sum_probs=49.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~   78 (174)
                      ||||+|++.|.+.+..+++.+|++|+|+|.          ++.. +....+++..+..    .++| +++++||+|+..
T Consensus        79 iiDtpG~~~f~~~~~~~~~~aD~~ilVvda----------~~g~-~~qt~~~l~~~~~----~~ip~iivviNK~Dl~~  142 (405)
T 2c78_A           79 HVDCPGHADYIKNMITGAAQMDGAILVVSA----------ADGP-MPQTREHILLARQ----VGVPYIVVFMNKVDMVD  142 (405)
T ss_dssp             EEECCCSGGGHHHHHHHHTTCSSEEEEEET----------TTCC-CHHHHHHHHHHHH----TTCCCEEEEEECGGGCC
T ss_pred             EEECCChHHHHHHHHHHHHHCCEEEEEEEC----------CCCC-cHHHHHHHHHHHH----cCCCEEEEEEECccccC
Confidence            699999999999999999999999999999          3332 2344556655432    2567 899999999973

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.14  E-value=6.7e-11  Score=95.68  Aligned_cols=108  Identities=14%  Similarity=0.141  Sum_probs=74.9

Q ss_pred             CeeCCCCc----hhhhhHhhhhc---CCCEEEEEEeCCCccccccCCCC---cchHHHHHHHHHHHHcCC-CCCCCcEEE
Q psy12099          1 MFDVGGQR----DERRKWIQCFN---DVTAIIFVTACSSYNMVLREDPT---QNRLRESLDLFKSIWNNR-WLRTISVIL   69 (174)
Q Consensus         1 iwD~~Gq~----~~r~~w~~y~~---~~~~ii~v~d~s~~~~~~~e~~~---~~~~~~~~~~~~~i~~~~-~~~~~~iil   69 (174)
                      ||||+|+.    .++.++..|++   .++++|+|+|+          ++   .+.+.+...|..++.... ...+.|++|
T Consensus       210 l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~----------s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~il  279 (342)
T 1lnz_A          210 MADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDM----------SGLEGRDPYDDYLTINQELSEYNLRLTERPQII  279 (342)
T ss_dssp             EEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEES----------SCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCB
T ss_pred             EecCCCCcccccccchhHHHHHHHHHhccEEEEEEEC----------CcccccChHHHHHHHHHHHHHhhhhhcCCCEEE
Confidence            69999964    34556666665   49999999999          45   677777777777775532 246889999


Q ss_pred             EEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHH
Q psy12099         70 FLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFI  121 (174)
Q Consensus        70 v~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i  121 (174)
                      |+||+|+..+...  ...+.+.+... ....++||++++|.++.++...+.+
T Consensus       280 V~NK~Dl~~~~e~--~~~l~~~l~~~-~~v~~iSA~tg~gi~eL~~~l~~~l  328 (342)
T 1lnz_A          280 VANKMDMPEAAEN--LEAFKEKLTDD-YPVFPISAVTREGLRELLFEVANQL  328 (342)
T ss_dssp             EEECTTSTTHHHH--HHHHHHHCCSC-CCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred             EEECccCCCCHHH--HHHHHHHhhcC-CCEEEEECCCCcCHHHHHHHHHHHH
Confidence            9999999764321  12233333221 4578999999999876666655543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.12  E-value=8.5e-11  Score=99.07  Aligned_cols=61  Identities=15%  Similarity=0.338  Sum_probs=45.0

Q ss_pred             CeeCCCCc-hhh--------hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEE
Q psy12099          1 MFDVGGQR-DER--------RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFL   71 (174)
Q Consensus         1 iwD~~Gq~-~~r--------~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~   71 (174)
                      ||||+|++ .+.        ..+..+++.++++|+|+|.          ++..++.+ .++++. +     .+.|+++|+
T Consensus       295 l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~----------s~~~s~~~-~~il~~-l-----~~~piivV~  357 (482)
T 1xzp_A          295 IVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDA----------SSPLDEED-RKILER-I-----KNKRYLVVI  357 (482)
T ss_dssp             EEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEET----------TSCCCHHH-HHHHHH-H-----TTSSEEEEE
T ss_pred             EEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecC----------CCCCCHHH-HHHHHH-h-----cCCCEEEEE
Confidence            69999998 553        3345689999999999999          55555543 233333 2     367999999


Q ss_pred             eCCchhh
Q psy12099         72 NKQDLLA   78 (174)
Q Consensus        72 NK~Dl~~   78 (174)
                      ||+|+..
T Consensus       358 NK~DL~~  364 (482)
T 1xzp_A          358 NKVDVVE  364 (482)
T ss_dssp             EECSSCC
T ss_pred             ECccccc
Confidence            9999964

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.12  E-value=2.1e-10  Score=98.86  Aligned_cols=64  Identities=13%  Similarity=0.218  Sum_probs=50.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|++.|...+..+++.++++|+|+|.          ++.........|. ....    .+.|+++++||+|+...
T Consensus        77 liDTPGh~dF~~ev~r~l~~aD~aILVVDa----------~~gv~~qt~~~~~-~a~~----~~ipiIvviNKiDl~~a  140 (600)
T 2ywe_A           77 LIDTPGHVDFSYEVSRALAACEGALLLIDA----------SQGIEAQTVANFW-KAVE----QDLVIIPVINKIDLPSA  140 (600)
T ss_dssp             EECCCCSGGGHHHHHHHHHTCSEEEEEEET----------TTBCCHHHHHHHH-HHHH----TTCEEEEEEECTTSTTC
T ss_pred             EEECCCcHhHHHHHHHHHHhCCEEEEEEEC----------CCCccHHHHHHHH-HHHH----CCCCEEEEEeccCcccc
Confidence            699999999999999999999999999999          5555544443333 3332    36899999999999653

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.12  E-value=2.1e-10  Score=96.63  Aligned_cols=65  Identities=20%  Similarity=0.239  Sum_probs=45.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchH------HHHHHHHHHHHcCCCCCCCcEEEEEeCC
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRL------RESLDLFKSIWNNRWLRTISVILFLNKQ   74 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~------~~~~~~~~~i~~~~~~~~~~iilv~NK~   74 (174)
                      ||||+|+++|.+.+..++++++++|+|+|.          ++....      ....+.... +..  ....|++|++||+
T Consensus       115 iiDTPG~~~f~~~~~~~~~~aD~~llVvDa----------~~g~~~~~~~~~~qt~e~~~~-~~~--~~~~~iIvviNK~  181 (483)
T 3p26_A          115 IVDAPGHRDFVPNAIMGISQADMAILCVDC----------STNAFESGFDLDGQTKEHMLL-ASS--LGIHNLIIAMNKM  181 (483)
T ss_dssp             EECCCCCGGGHHHHHHHHTTCSEEEEEEEC----------CC------CCCCHHHHHHHHH-HHH--TTCCCEEEEEECG
T ss_pred             EEECCCcHHHHHHHHHhhhhCCEEEEEEEC----------CCCccccccchhhhHHHHHHH-HHH--cCCCcEEEEEECc
Confidence            699999999999999999999999999999          333211      122222222 221  2235799999999


Q ss_pred             chhh
Q psy12099         75 DLLA   78 (174)
Q Consensus        75 Dl~~   78 (174)
                      |+..
T Consensus       182 Dl~~  185 (483)
T 3p26_A          182 DNVD  185 (483)
T ss_dssp             GGGT
T ss_pred             Cccc
Confidence            9975

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.12  E-value=1.1e-10  Score=96.00  Aligned_cols=63  Identities=17%  Similarity=0.242  Sum_probs=47.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~   78 (174)
                      ||||+|++.|.+.+..+++.++++|+|+|.          ++.. +....+++..+..    .++| +++++||+|+..
T Consensus        70 iiDtpG~~~f~~~~~~~~~~aD~~ilVvda----------~~g~-~~qt~e~l~~~~~----~~vp~iivviNK~Dl~~  133 (397)
T 1d2e_A           70 HTDCPGHADYVKNMITGTAPLDGCILVVAA----------NDGP-MPQTREHLLLARQ----IGVEHVVVYVNKADAVQ  133 (397)
T ss_dssp             EEECSSHHHHHHHHHHTSSCCSEEEEEEET----------TTCS-CHHHHHHHHHHHH----TTCCCEEEEEECGGGCS
T ss_pred             EEECCChHHHHHHHHhhHhhCCEEEEEEEC----------CCCC-CHHHHHHHHHHHH----cCCCeEEEEEECcccCC
Confidence            699999999999999999999999999999          3322 2334444433322    2577 789999999974

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.11  E-value=1.4e-10  Score=99.98  Aligned_cols=64  Identities=17%  Similarity=0.213  Sum_probs=50.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+|++.|...+..+++.++++|+|+|.          ++.........|. ....    .+.|+++++||+|+...
T Consensus        75 liDTPGh~dF~~ev~~~l~~aD~aILVVDa----------~~gv~~qt~~~~~-~~~~----~~ipiIvViNKiDl~~a  138 (599)
T 3cb4_D           75 FIDTPGHVDFSYEVSRSLAACEGALLVVDA----------GQGVEAQTLANCY-TAME----MDLEVVPVLNKIDLPAA  138 (599)
T ss_dssp             EEECCCCGGGHHHHHHHHHHCSEEEEEEET----------TTCCCTHHHHHHH-HHHH----TTCEEEEEEECTTSTTC
T ss_pred             EEECCCchHHHHHHHHHHHHCCEEEEEEEC----------CCCCCHHHHHHHH-HHHH----CCCCEEEeeeccCcccc
Confidence            699999999999999999999999999999          4544444333333 3332    36799999999999753

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.11  E-value=2.1e-11  Score=101.55  Aligned_cols=64  Identities=20%  Similarity=0.261  Sum_probs=48.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHH-------HHHHHHHcCCCCCCCcEEEEEeC
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESL-------DLFKSIWNNRWLRTISVILFLNK   73 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~-------~~~~~i~~~~~~~~~~iilv~NK   73 (174)
                      ||||+|++.|.+.+..+++.++++|+|+|.          ++ .+++...       +.+.....   ..-.|+++++||
T Consensus        88 iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa----------~~-gsfe~~~~~~~qt~~~~~~~~~---~~~~~iivviNK  153 (435)
T 1jny_A           88 IIDAPGHRDFVKNMITGASQADAAILVVSA----------KK-GEYEAGMSVEGQTREHIILAKT---MGLDQLIVAVNK  153 (435)
T ss_dssp             ECCCSSSTTHHHHHHHTSSCCSEEEEEEEC----------ST-THHHHHHSTTCHHHHHHHHHHH---TTCTTCEEEEEC
T ss_pred             EEECCCcHHHHHHHHhhhhhcCEEEEEEEC----------CC-CccccccccchHHHHHHHHHHH---cCCCeEEEEEEc
Confidence            699999999999999999999999999999          45 5555332       22222111   123479999999


Q ss_pred             Cchhh
Q psy12099         74 QDLLA   78 (174)
Q Consensus        74 ~Dl~~   78 (174)
                      +|+..
T Consensus       154 ~Dl~~  158 (435)
T 1jny_A          154 MDLTE  158 (435)
T ss_dssp             GGGSS
T ss_pred             ccCCC
Confidence            99965

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.10  E-value=3.3e-10  Score=95.51  Aligned_cols=112  Identities=13%  Similarity=0.098  Sum_probs=72.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++.|.+.+..+++.+|++|+|+|.          ++. ......+.+..+ ..   .++|+++++||+|+..+.
T Consensus        77 iiDtPGh~~~~~~~~~~~~~aD~~ilVvda----------~~g-~~~qt~e~l~~~-~~---~~ip~IvviNK~Dl~~~~  141 (482)
T 1wb1_A           77 LVDAPGHADLIRAVVSAADIIDLALIVVDA----------KEG-PKTQTGEHMLIL-DH---FNIPIIVVITKSDNAGTE  141 (482)
T ss_dssp             ECCCSSHHHHHHHHHHHTTSCCEEEEEEET----------TTC-SCHHHHHHHHHH-HH---TTCCBCEEEECTTSSCHH
T ss_pred             EEECCChHHHHHHHHHHHhhCCEEEEEEec----------CCC-ccHHHHHHHHHH-HH---cCCCEEEEEECCCcccch
Confidence            699999999999999999999999999999          331 112222333322 11   357889999999997532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  . .                         ..++..+++..    .     ..-..+.+..+||+++.||.++++.+.
T Consensus       142 ~~--~-~-------------------------~~~~l~~~l~~----~-----~~~~~~~ii~vSA~~g~gI~~L~~~L~  184 (482)
T 1wb1_A          142 EI--K-R-------------------------TEMIMKSILQS----T-----HNLKNSSIIPISAKTGFGVDELKNLII  184 (482)
T ss_dssp             HH--H-H-------------------------HHHHHHHHHHH----S-----SSGGGCCEEECCTTTCTTHHHHHHHHH
T ss_pred             hH--H-H-------------------------HHHHHHHHHhh----h-----cccccceEEEEECcCCCCHHHHHHHHH
Confidence            11  0 0                         01112222211    0     001135677899999999999999988


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.+-
T Consensus       185 ~~i~  188 (482)
T 1wb1_A          185 TTLN  188 (482)
T ss_dssp             HHHH
T ss_pred             Hhhc
Confidence            8764

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.09  E-value=4.7e-10  Score=95.54  Aligned_cols=63  Identities=17%  Similarity=0.270  Sum_probs=50.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      ||||+|++.|+..+..+++.++++|+|+|.          ++.... ....+|..+..    .++|+++|+||+|+..
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~allVvDa----------~~g~~~-~t~~~~~~~~~----~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           86 LLDTPGHADFTEDTYRTLTAVDSALMVIDA----------AKGVEP-RTIKLMEVCRL----RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             EECCCCSTTCCHHHHHGGGGCSEEEEEEET----------TTCSCH-HHHHHHHHHHT----TTCCEEEEEECTTSCC
T ss_pred             EEECCCchhHHHHHHHHHHhCCEEEEEEeC----------CCCCCH-HHHHHHHHHHH----cCCCEEEEEeCCCCcc
Confidence            699999999999999999999999999999          443333 33445555432    3689999999999964

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.08  E-value=3.1e-10  Score=93.61  Aligned_cols=112  Identities=15%  Similarity=0.116  Sum_probs=70.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++.|.+.+......+|++|+|+|.          ++......+.+.+..+..   ....|+++++||+|+....
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda----------~~g~~~~qt~e~l~~~~~---~~~~~iivviNK~Dl~~~~  153 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAA----------NEPCPRPQTREHLMALQI---IGQKNIIIAQNKIELVDKE  153 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEET----------TSCSSCHHHHHHHHHHHH---HTCCCEEEEEECGGGSCHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEEC----------CCCCCChhHHHHHHHHHH---cCCCcEEEEEECccCCCHH
Confidence            699999999998888888889999999999          432112222222222211   1235899999999997543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  .                          +.+++..+|+..          .....+.++.+||+++.||.++|+++.
T Consensus       154 ~~--~--------------------------~~~~~i~~~l~~----------~~~~~~~~i~vSA~~g~gi~~L~~~l~  195 (410)
T 1kk1_A          154 KA--L--------------------------ENYRQIKEFIEG----------TVAENAPIIPISALHGANIDVLVKAIE  195 (410)
T ss_dssp             HH--H--------------------------HHHHHHHHHHTT----------STTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             HH--H--------------------------HHHHHHHHHHHh----------cCcCCCeEEEeeCCCCCCHHHHHHHHH
Confidence            11  0                          011222222210          001235677899999999999999887


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       196 ~~~  198 (410)
T 1kk1_A          196 DFI  198 (410)
T ss_dssp             HHS
T ss_pred             HhC
Confidence            654

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.06  E-value=6.7e-11  Score=100.05  Aligned_cols=64  Identities=13%  Similarity=0.193  Sum_probs=47.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +|||+||+.|...|..+++.+|++|+|+|.+          +. .+..+.+.+..+.    ..+.|+++++||+|+...
T Consensus        55 ~iDTPGhe~f~~~~~~~~~~aD~aILVVda~----------~g-~~~qT~e~l~~~~----~~~vPiIVviNKiDl~~~  118 (501)
T 1zo1_I           55 FLDTPGHAAFTSMRARGAQATDIVVLVVAAD----------DG-VMPQTIEAIQHAK----AAQVPVVVAVNKIDKPEA  118 (501)
T ss_dssp             EECCCTTTCCTTSBCSSSBSCSSEEEEEETT----------TB-SCTTTHHHHHHHH----HTTCCEEEEEECSSSSTT
T ss_pred             EEECCCcHHHHHHHHHHHhhCCEEEEEeecc----------cC-ccHHHHHHHHHHH----hcCceEEEEEEecccccc
Confidence            6999999999999999999999999999983          31 1112223333322    136899999999999753

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.06  E-value=5.5e-10  Score=93.07  Aligned_cols=64  Identities=13%  Similarity=0.162  Sum_probs=46.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcc---hH---HHHHHHHHHHHcCCCCCCCc-EEEEEeC
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQN---RL---RESLDLFKSIWNNRWLRTIS-VILFLNK   73 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~---~~---~~~~~~~~~i~~~~~~~~~~-iilv~NK   73 (174)
                      ||||+||++|.+.+..+++.+|++|+|+|.+          +..   .+   ....+.+..+..    .++| +++++||
T Consensus        99 iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~----------~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK  164 (439)
T 3j2k_7           99 ILDAPGHKSFVPNMIGGASQADLAVLVISAR----------KGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINK  164 (439)
T ss_pred             EEECCChHHHHHHHHhhHhhCCEEEEEEECC----------CCccccccCCCchHHHHHHHHHH----cCCCeEEEEeec
Confidence            6999999999999999999999999999993          321   01   122233322221    2455 9999999


Q ss_pred             Cchhh
Q psy12099         74 QDLLA   78 (174)
Q Consensus        74 ~Dl~~   78 (174)
                      +|+..
T Consensus       165 ~Dl~~  169 (439)
T 3j2k_7          165 MDDPT  169 (439)
T ss_pred             CCCcc
Confidence            99853

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.05  E-value=6.7e-10  Score=92.46  Aligned_cols=112  Identities=19%  Similarity=0.256  Sum_probs=65.8

Q ss_pred             CeeCCCCchhhhhH------------hhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEE
Q psy12099          1 MFDVGGQRDERRKW------------IQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVI   68 (174)
Q Consensus         1 iwD~~Gq~~~r~~w------------~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~ii   68 (174)
                      +|||+|+++.+...            ..+++.++++++|+|.          ++..+..+ ..+. ..+..   .+.|++
T Consensus       232 l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~----------~~~~~~~~-~~i~-~~l~~---~~~~~i  296 (439)
T 1mky_A          232 FVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDA----------TQGITRQD-QRMA-GLMER---RGRASV  296 (439)
T ss_dssp             ESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEET----------TTCCCHHH-HHHH-HHHHH---TTCEEE
T ss_pred             EEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeC----------CCCCCHHH-HHHH-HHHHH---cCCCEE
Confidence            59999997655432            3467889999999999          44333332 2222 22222   368999


Q ss_pred             EEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeeccccc
Q psy12099         69 LFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVD  148 (174)
Q Consensus        69 lv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d  148 (174)
                      +++||+|+......    .                          .++....+...+...        ....++++||++
T Consensus       297 lv~NK~Dl~~~~~~----~--------------------------~~~~~~~~~~~~~~~--------~~~~~~~~SA~~  338 (439)
T 1mky_A          297 VVFNKWDLVVHREK----R--------------------------YDEFTKLFREKLYFI--------DYSPLIFTSADK  338 (439)
T ss_dssp             EEEECGGGSTTGGG----C--------------------------HHHHHHHHHHHCGGG--------TTSCEEECBTTT
T ss_pred             EEEECccCCCchhh----H--------------------------HHHHHHHHHHHhccC--------CCCcEEEEECCC
Confidence            99999999753211    0                          111111222222111        124567899999


Q ss_pred             chhHHHHHHHHHHHHHH
Q psy12099        149 TENIRRVFNDCRDIIQR  165 (174)
Q Consensus       149 ~~~i~~~f~~~~~~i~~  165 (174)
                      |.||.++|+.+.+.+.+
T Consensus       339 g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          339 GWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999876654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.04  E-value=2.1e-10  Score=95.95  Aligned_cols=64  Identities=20%  Similarity=0.259  Sum_probs=46.7

Q ss_pred             CeeCCC--------CchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGG--------QRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~G--------q~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      ||||+|        +++++..+..++++++++|||+|.          .+.  +.....++..++..   .+.|++|++|
T Consensus        75 liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~----------~~~--~~~~d~~l~~~l~~---~~~pvilV~N  139 (456)
T 4dcu_A           75 LIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNG----------REG--VTAADEEVAKILYR---TKKPVVLAVN  139 (456)
T ss_dssp             EECCCC------CCHHHHHHHHHHHHHHCSEEEEEEES----------SSC--SCHHHHHHHHHHTT---CCSCEEEEEE
T ss_pred             EEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeC----------CCC--CChHHHHHHHHHHH---cCCCEEEEEE
Confidence            699999        999999999999999999999998          332  22233445555544   4789999999


Q ss_pred             CCchhhH
Q psy12099         73 KQDLLAE   79 (174)
Q Consensus        73 K~Dl~~~   79 (174)
                      |+|+...
T Consensus       140 K~D~~~~  146 (456)
T 4dcu_A          140 KLDNTEM  146 (456)
T ss_dssp             CC-----
T ss_pred             Cccchhh
Confidence            9998653

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.03  E-value=3.3e-10  Score=94.23  Aligned_cols=99  Identities=12%  Similarity=0.047  Sum_probs=68.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh--
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA--   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~--   78 (174)
                      ||||+||+.|.+.+..+++.++++|+|+|.          ++.. +....+++..+..   ....|+++++||+|+..  
T Consensus       108 iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa----------~~g~-~~qt~~~l~~~~~---~~~~~iIvviNK~Dl~~~~  173 (434)
T 1zun_B          108 IADTPGHEQYTRNMATGASTCDLAIILVDA----------RYGV-QTQTRRHSYIASL---LGIKHIVVAINKMDLNGFD  173 (434)
T ss_dssp             EEECCCSGGGHHHHHHHHTTCSEEEEEEET----------TTCS-CHHHHHHHHHHHH---TTCCEEEEEEECTTTTTSC
T ss_pred             EEECCChHHHHHHHHHHHhhCCEEEEEEEC----------CCCC-cHHHHHHHHHHHH---cCCCeEEEEEEcCcCCccc
Confidence            699999999999999999999999999999          3322 2333444433322   12236999999999975  


Q ss_pred             -HHHhccccchhhhhhccC-----CCCCCCCCCCCCCCChH
Q psy12099         79 -EKVKAGKSRLEDYFQEFT-----RYQTPLDATPDPGEDPI  113 (174)
Q Consensus        79 -~~~~~~~~~l~~~~~~~~-----~~~~~~~a~~~~g~~~~  113 (174)
                       +........+.+++..++     .+..++||++|.|.++.
T Consensus       174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence             222101234555665555     34678999999997753

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.00  E-value=1e-09  Score=92.11  Aligned_cols=94  Identities=18%  Similarity=0.255  Sum_probs=50.1

Q ss_pred             CeeCCCCchhhhhHh--------hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDERRKWI--------QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~--------~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +|||+|++.+...+.        .++++++++|+|+|.          ++..+... ..++..+      .+.|+++|+|
T Consensus       276 liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~----------s~~~~~~~-~~i~~~l------~~~piivV~N  338 (462)
T 3geh_A          276 VLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDA----------ATGWTTGD-QEIYEQV------KHRPLILVMN  338 (462)
T ss_dssp             ECC--------------------CCCCSCSEEEEEEET----------TTCSCHHH-HHHHHHH------TTSCEEEEEE
T ss_pred             EEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEecc----------CCCCCHHH-HHHHHhc------cCCcEEEEEE
Confidence            699999977654443        368899999999999          44444333 3444443      2369999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIR  116 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~  116 (174)
                      |+|+......   ..+.++.  ...+..++||++|.|.++.++.
T Consensus       339 K~Dl~~~~~~---~~~~~~~--~~~~~i~iSAktg~Gi~eL~~~  377 (462)
T 3geh_A          339 KIDLVEKQLI---TSLEYPE--NITQIVHTAAAQKQGIDSLETA  377 (462)
T ss_dssp             CTTSSCGGGS---TTCCCCT--TCCCEEEEBTTTTBSHHHHHHH
T ss_pred             CCCCCcchhh---HHHHHhc--cCCcEEEEECCCCCCHHHHHHH
Confidence            9999765422   1122211  1123456777777775444433

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.99  E-value=1.7e-09  Score=88.23  Aligned_cols=108  Identities=8%  Similarity=-0.020  Sum_probs=71.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE-EEEEe-CCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV-ILFLN-KQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i-ilv~N-K~Dl~~   78 (174)
                      +|||+|+++|.+....+++.++++|+|+| +.         .  .+....+++..+..    .++|. ++++| |+|+ .
T Consensus        64 iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~---------g--~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~  126 (370)
T 2elf_A           64 FVDAHSYPKTLKSLITALNISDIAVLCIP-PQ---------G--LDAHTGECIIALDL----LGFKHGIIALTRSDST-H  126 (370)
T ss_dssp             EEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT---------C--CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-C
T ss_pred             EEECCChHHHHHHHHHHHHHCCEEEEEEc-CC---------C--CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-C
Confidence            69999999999888889999999999999 42         1  12333444444322    24566 88888 9999 4


Q ss_pred             HHH-hccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeee--ccccc---chhH
Q psy12099         79 EKV-KAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHF--TCAVD---TENI  152 (174)
Q Consensus        79 ~~~-~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~--tsA~d---~~~i  152 (174)
                      +.. ......+++++..++                                       ...+.+..  +||++   ++||
T Consensus       127 ~~~~~~~~~~i~~~l~~~~---------------------------------------~~~~~ii~~~~SA~~~~~g~gi  167 (370)
T 2elf_A          127 MHAIDELKAKLKVITSGTV---------------------------------------LQDWECISLNTNKSAKNPFEGV  167 (370)
T ss_dssp             HHHHHHHHHHHHHHTTTST---------------------------------------TTTCEEEECCCCTTSSSTTTTH
T ss_pred             HHHHHHHHHHHHHHHHhcC---------------------------------------CCceEEEecccccccCcCCCCH
Confidence            321 100012222222111                                       12356778  99999   9999


Q ss_pred             HHHHHHHHHHHH
Q psy12099        153 RRVFNDCRDIIQ  164 (174)
Q Consensus       153 ~~~f~~~~~~i~  164 (174)
                      +++++.+.+.+-
T Consensus       168 ~~L~~~l~~~~~  179 (370)
T 2elf_A          168 DELKARINEVAE  179 (370)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcc
Confidence            999999887654

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=98.97  E-value=1.1e-09  Score=91.76  Aligned_cols=63  Identities=17%  Similarity=0.240  Sum_probs=46.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcc---hHH---HHHHHHHHHHcCCCCCCCc-EEEEEeC
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQN---RLR---ESLDLFKSIWNNRWLRTIS-VILFLNK   73 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~---~~~---~~~~~~~~i~~~~~~~~~~-iilv~NK   73 (174)
                      ||||+||+.|.+.+..+++.++++|+|+|.          ++..   +|+   ...+.+..+..    .++| +++++||
T Consensus        89 iiDtPGh~~f~~~~~~~~~~aD~~ilVvda----------~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK  154 (458)
T 1f60_A           89 VIDAPGHRDFIKNMITGTSQADCAILIIAG----------GVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNK  154 (458)
T ss_dssp             EEECCCCTTHHHHHHHSSSCCSEEEEEEEC----------SHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEEC
T ss_pred             EEECCCcHHHHHHHHhhhhhCCEEEEEEeC----------CcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEc
Confidence            699999999999999999999999999999          3321   111   23333332221    2454 9999999


Q ss_pred             Cchh
Q psy12099         74 QDLL   77 (174)
Q Consensus        74 ~Dl~   77 (174)
                      +|+.
T Consensus       155 ~Dl~  158 (458)
T 1f60_A          155 MDSV  158 (458)
T ss_dssp             GGGG
T ss_pred             cccc
Confidence            9997

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.97  E-value=6.7e-10  Score=88.30  Aligned_cols=60  Identities=15%  Similarity=0.087  Sum_probs=47.8

Q ss_pred             CCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcc-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          6 GQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQN-RLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         6 Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~-~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      .|++++.+...|++++|++|+|+|+          +++. ++.....|+..+..    .++|++||+||+|+..+
T Consensus        65 i~er~~~l~r~~~~naD~vliV~d~----------~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~  125 (302)
T 2yv5_A           65 VEERKNLLIRPKVANVDRVIIVETL----------KMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNE  125 (302)
T ss_dssp             ECCCSCEEETTEEESCCEEEEEECS----------TTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCH
T ss_pred             eCChHHHHhHHHHHhcCEEEEEEEC----------CCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCc
Confidence            4899999999999999999999999          5554 66655566654432    47899999999999654

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=98.97  E-value=1.1e-09  Score=84.50  Aligned_cols=119  Identities=13%  Similarity=0.195  Sum_probs=66.0

Q ss_pred             CeeCCCCchhh-----------hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchH-HHHHHHHHHHHcCCCCCCCcEE
Q psy12099          1 MFDVGGQRDER-----------RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRL-RESLDLFKSIWNNRWLRTISVI   68 (174)
Q Consensus         1 iwD~~Gq~~~r-----------~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~-~~~~~~~~~i~~~~~~~~~~ii   68 (174)
                      ||||+|+..+.           +....++++++++|+|+|.          +..... .....++..+.... . ..|++
T Consensus        75 iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~----------~~~~~~~~~~~~~l~~~~~~~-~-~~~~i  142 (260)
T 2xtp_A           75 IIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQL----------GRYTSQDQQAAQRVKEIFGED-A-MGHTI  142 (260)
T ss_dssp             EEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEET----------TCCCHHHHHHHHHHHHHHCGG-G-GGGEE
T ss_pred             EEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeC----------CCCCHHHHHHHHHHHHHhCch-h-hccEE
Confidence            69999986542           2334578999999999999          332222 22344555543321 1 34555


Q ss_pred             EEEe-CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCc--ceeeeecc
Q psy12099         69 LFLN-KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKH--YCYPHFTC  145 (174)
Q Consensus        69 lv~N-K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~--~~~~~~ts  145 (174)
                      +++| |+|+....       +..+..+...                 +++.+++..          ...+  .+....+|
T Consensus       143 ~vv~nK~Dl~~~~-------~~~~i~~~~~-----------------~~~~~~~~~----------~~~~~~~~~~~~~S  188 (260)
T 2xtp_A          143 VLFTHKEDLNGGS-------LMDYMHDSDN-----------------KALSKLVAA----------CGGRICAFNNRAEG  188 (260)
T ss_dssp             EEEECGGGGTTCC-------HHHHHHHCCC-----------------HHHHHHHHH----------TTTCEEECCTTCCH
T ss_pred             EEEEcccccCCcc-------HHHHHHhcch-----------------HHHHHHHHH----------hCCeEEEecCcccc
Confidence            5555 99996432       2222111110                 111111110          1111  12225789


Q ss_pred             cccchhHHHHHHHHHHHHHH
Q psy12099        146 AVDTENIRRVFNDCRDIIQR  165 (174)
Q Consensus       146 A~d~~~i~~~f~~~~~~i~~  165 (174)
                      |+++.|+.++|+.|.+.+..
T Consensus       189 A~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          189 SNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHh
Confidence            99999999999999887764

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.95  E-value=8.8e-10  Score=100.55  Aligned_cols=63  Identities=21%  Similarity=0.288  Sum_probs=47.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~   78 (174)
                      ||||+||+.|.+.+..+++.++++|+|+|.+          +.. +....+++..+..    .++| +++++||+|+..
T Consensus       363 IIDTPGHedF~~~mi~gas~AD~aILVVDAt----------dGv-~~QTrEhL~ll~~----lgIP~IIVVINKiDLv~  426 (1289)
T 3avx_A          363 HVDCPGHADYVKNMITGAAQMDGAILVVAAT----------DGP-MPQTREHILLGRQ----VGVPYIIVFLNKCDMVD  426 (1289)
T ss_dssp             EEECCCHHHHHHHHHHTSCCCSEEEEEEETT----------TCS-CTTHHHHHHHHHH----HTCSCEEEEEECCTTCC
T ss_pred             EEECCChHHHHHHHHHHHhhCCEEEEEEcCC----------ccC-cHHHHHHHHHHHH----cCCCeEEEEEeeccccc
Confidence            6999999999999999999999999999994          321 2233444443322    2567 889999999974

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=98.95  E-value=2.4e-09  Score=87.22  Aligned_cols=117  Identities=14%  Similarity=0.056  Sum_probs=73.2

Q ss_pred             CeeCCCC---------chhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcc-hHHHHHHHHHHHHcCCCCCCCcEEEE
Q psy12099          1 MFDVGGQ---------RDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQN-RLRESLDLFKSIWNNRWLRTISVILF   70 (174)
Q Consensus         1 iwD~~Gq---------~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~-~~~~~~~~~~~i~~~~~~~~~~iilv   70 (174)
                      +|||+|+         +.+++.+. ++..++.+++|+|+          ++.. ...+....+..++......+.|+++|
T Consensus       230 l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~----------s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV  298 (364)
T 2qtf_A          230 LVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDS----------TFSENLLIETLQSSFEILREIGVSGKPILVT  298 (364)
T ss_dssp             EEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEET----------TSCHHHHHHHHHHHHHHHHHHTCCSCCEEEE
T ss_pred             EEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEEC----------CCCcchHHHHHHHHHHHHHHhCcCCCCEEEE
Confidence            5999998         44666655 67899999999999          4443 13333333444444333457899999


Q ss_pred             EeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccch
Q psy12099         71 LNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTE  150 (174)
Q Consensus        71 ~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~  150 (174)
                      +||+|+......                             ...+.+..+.. .   + .     .....+..+||+++.
T Consensus       299 ~NK~Dl~~~~~~-----------------------------~~~~~~~~l~~-~---l-~-----~~~~~~~~~SA~~g~  339 (364)
T 2qtf_A          299 LNKIDKINGDLY-----------------------------KKLDLVEKLSK-E---L-Y-----SPIFDVIPISALKRT  339 (364)
T ss_dssp             EECGGGCCSCHH-----------------------------HHHHHHHHHHH-H---H-C-----SCEEEEEECBTTTTB
T ss_pred             EECCCCCCchHH-----------------------------HHHHHHHHHHH-H---h-c-----CCCCcEEEEECCCCc
Confidence            999998642111                             00111111111 0   0 0     012345789999999


Q ss_pred             hHHHHHHHHHHHHHHhh
Q psy12099        151 NIRRVFNDCRDIIQRMH  167 (174)
Q Consensus       151 ~i~~~f~~~~~~i~~~~  167 (174)
                      |++++++.+.+.+....
T Consensus       340 gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          340 NLELLRDKIYQLATQLS  356 (364)
T ss_dssp             SHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHhcccC
Confidence            99999999998776543

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=98.92  E-value=8.9e-09  Score=80.71  Aligned_cols=104  Identities=16%  Similarity=0.168  Sum_probs=65.5

Q ss_pred             CeeCCCCc-------------hhhhhHhhhhcCCCEEE-EEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc
Q psy12099          1 MFDVGGQR-------------DERRKWIQCFNDVTAII-FVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS   66 (174)
Q Consensus         1 iwD~~Gq~-------------~~r~~w~~y~~~~~~ii-~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~   66 (174)
                      +|||+|+.             .++.++..|+++++++| +|+|.          ++.-...+...+++.+ .   ..+.|
T Consensus       129 lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~----------~~~~~~~~~~~~~~~~-~---~~~~~  194 (299)
T 2aka_B          129 LVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPA----------NSDLANSDALKIAKEV-D---PQGQR  194 (299)
T ss_dssp             EEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEES----------SSCGGGCHHHHHHHHH-C---TTCSS
T ss_pred             EEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecC----------CcchhhhHHHHHHHHh-C---CCCCe
Confidence            69999963             57788999999998877 78998          3322222333344443 2   24689


Q ss_pred             EEEEEeCCchhhHHHhccccchhhhhhc--cCC-CCCCCCCCCCCCCChHHHHHHH
Q psy12099         67 VILFLNKQDLLAEKVKAGKSRLEDYFQE--FTR-YQTPLDATPDPGEDPIVIRAKY  119 (174)
Q Consensus        67 iilv~NK~Dl~~~~~~~~~~~l~~~~~~--~~~-~~~~~~a~~~~g~~~~~~~a~~  119 (174)
                      +++|+||+|+..+... ....++..+..  .++ +..++||++|.|.++.++...+
T Consensus       195 ~i~V~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~  249 (299)
T 2aka_B          195 TIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  249 (299)
T ss_dssp             EEEEEECGGGSCTTCC-CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred             EEEEEEccccCCCCch-HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence            9999999999753210 00111111111  111 4678999999999877776544

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.91  E-value=1.3e-09  Score=94.31  Aligned_cols=65  Identities=22%  Similarity=0.261  Sum_probs=45.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcc------hHHHHHHHHHHHHcCCCCCCCcEEEEEeCC
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQN------RLRESLDLFKSIWNNRWLRTISVILFLNKQ   74 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~------~~~~~~~~~~~i~~~~~~~~~~iilv~NK~   74 (174)
                      ||||+|+++|.+.+..+++.++++|+|+|.+          +..      ......+.+..+ ..  ....|++|++||+
T Consensus       249 iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~----------~g~~e~~~~~~~qt~e~l~~~-~~--lgi~~iIVVvNKi  315 (611)
T 3izq_1          249 IVDAPGHRDFVPNAIMGISQADMAILCVDCS----------TNAFESGFDLDGQTKEHMLLA-SS--LGIHNLIIAMNKM  315 (611)
T ss_dssp             EEECCSSSCHHHHHTTTSSCCSEEEEEEECS----------HHHHHTTCCTTSHHHHHHHHH-HT--TTCCEEEEEEECT
T ss_pred             EEECCCCcccHHHHHHHHhhcCceEEEEECC----------CCcccccchhhhHHHHHHHHH-HH--cCCCeEEEEEecc
Confidence            6999999999999999999999999999993          310      001122222222 11  2234699999999


Q ss_pred             chhh
Q psy12099         75 DLLA   78 (174)
Q Consensus        75 Dl~~   78 (174)
                      |+..
T Consensus       316 Dl~~  319 (611)
T 3izq_1          316 DNVD  319 (611)
T ss_dssp             TTTT
T ss_pred             cccc
Confidence            9875

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.90  E-value=5.5e-10  Score=90.87  Aligned_cols=63  Identities=14%  Similarity=0.208  Sum_probs=34.7

Q ss_pred             CeeCCCC-------chhhhhHh-------hhhcCCC-------------EEEEEEeCCCccccccCCCCcchHHHHH-HH
Q psy12099          1 MFDVGGQ-------RDERRKWI-------QCFNDVT-------------AIIFVTACSSYNMVLREDPTQNRLRESL-DL   52 (174)
Q Consensus         1 iwD~~Gq-------~~~r~~w~-------~y~~~~~-------------~ii~v~d~s~~~~~~~e~~~~~~~~~~~-~~   52 (174)
                      ||||+|+       ++++.++.       .|+++++             +++|+++-+           ..++.... .+
T Consensus        99 i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-----------~~~l~~~d~~~  167 (361)
T 2qag_A           99 VVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-----------GHGLKPLDVAF  167 (361)
T ss_dssp             EEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-----------SSSCCHHHHHH
T ss_pred             EEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-----------CCCcchhHHHH
Confidence            6999999       89999997       8887654             355555431           23333332 33


Q ss_pred             HHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099         53 FKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus        53 ~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +..+ .    .++|+++|+||+|+...
T Consensus       168 ~~~l-~----~~~piIlV~NK~Dl~~~  189 (361)
T 2qag_A          168 MKAI-H----NKVNIVPVIAKADTLTL  189 (361)
T ss_dssp             HHHT-C----S-SCEEEEEECCSSSCH
T ss_pred             HHHh-c----cCCCEEEEEECCCCCCH
Confidence            4433 2    47899999999999754

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.84  E-value=3.3e-09  Score=92.63  Aligned_cols=62  Identities=10%  Similarity=0.057  Sum_probs=49.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~   77 (174)
                      ||||+|++.|+..+..+++.++++|+|+|.          ++.-. .....++..+..    .++|+++++||+|+.
T Consensus        78 liDTpG~~~f~~~~~~~l~~ad~~ilVvD~----------~~g~~-~qt~~~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           78 LLDAPGYGDFVGEIRGALEAADAALVAVSA----------EAGVQ-VGTERAWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             EEECCCSGGGHHHHHHHHHHCSEEEEEEET----------TTCSC-HHHHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             EEeCCCccchHHHHHHHHhhcCcEEEEEcC----------Ccccc-hhHHHHHHHHHH----ccCCEEEEecCCchh
Confidence            699999999999999999999999999998          33322 233355555443    368999999999986

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=98.83  E-value=3.6e-10  Score=94.87  Aligned_cols=99  Identities=13%  Similarity=0.175  Sum_probs=54.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCc---chHH---HHHHHHHHHHcCCCCCCCc-EEEEEeC
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQ---NRLR---ESLDLFKSIWNNRWLRTIS-VILFLNK   73 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~---~~~~---~~~~~~~~i~~~~~~~~~~-iilv~NK   73 (174)
                      ||||+||+.|.+.+..+++.++++|+|+|.+          +.   .+|+   ...+.+....    ..++| +++++||
T Consensus       125 iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~----------~g~~e~sf~~~~qt~e~l~~~~----~~~vp~iivviNK  190 (467)
T 1r5b_A          125 LLDAPGHKGYVTNMINGASQADIGVLVISAR----------RGEFEAGFERGGQTREHAVLAR----TQGINHLVVVINK  190 (467)
T ss_dssp             ECCCCC-----------TTSCSEEEEEEECS----------TTHHHHTTSTTCCHHHHHHHHH----HTTCSSEEEEEEC
T ss_pred             EEECCCcHHHHHHHHhhcccCCEEEEEEeCC----------cCccccccCCCCcHHHHHHHHH----HcCCCEEEEEEEC
Confidence            6999999999999999999999999999993          32   1111   1222222221    13566 9999999


Q ss_pred             Cchhh-----HHHhccccchhhhhhcc-------CCCCCCCCCCCCCCCChH
Q psy12099         74 QDLLA-----EKVKAGKSRLEDYFQEF-------TRYQTPLDATPDPGEDPI  113 (174)
Q Consensus        74 ~Dl~~-----~~~~~~~~~l~~~~~~~-------~~~~~~~~a~~~~g~~~~  113 (174)
                      +|+..     ++.......+.+++..+       ..+..++||++|.|..+.
T Consensus       191 ~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l  242 (467)
T 1r5b_A          191 MDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR  242 (467)
T ss_dssp             TTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred             ccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence            99953     22111123455555543       234688999999997643

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=98.82  E-value=7.7e-09  Score=82.03  Aligned_cols=92  Identities=18%  Similarity=0.184  Sum_probs=58.2

Q ss_pred             CeeCCCCc---------hhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEE
Q psy12099          1 MFDVGGQR---------DERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFL   71 (174)
Q Consensus         1 iwD~~Gq~---------~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~   71 (174)
                      +|||+|+.         .+...+..+++.++++++|+|.+          +...   ...++...+..   .+.|++|++
T Consensus        60 ~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~----------~~~~---~~~~i~~~l~~---~~~P~ilvl  123 (301)
T 1ega_A           60 YVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGT----------RWTP---DDEMVLNKLRE---GKAPVILAV  123 (301)
T ss_dssp             EESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETT----------CCCH---HHHHHHHHHHS---SSSCEEEEE
T ss_pred             EEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCC----------CCCH---HHHHHHHHHHh---cCCCEEEEE
Confidence            59999998         34445567889999999999993          3221   12233333332   368999999


Q ss_pred             eCCchhh--HHHhccccchhhhhhccCC-CCCCCCCCCCCCCC
Q psy12099         72 NKQDLLA--EKVKAGKSRLEDYFQEFTR-YQTPLDATPDPGED  111 (174)
Q Consensus        72 NK~Dl~~--~~~~~~~~~l~~~~~~~~~-~~~~~~a~~~~g~~  111 (174)
                      ||+|+..  +.+.   ..+.++...++. ...+.||++|.|.+
T Consensus       124 NK~D~~~~~~~~~---~~l~~l~~~~~~~~~i~iSA~~g~~v~  163 (301)
T 1ega_A          124 NKVDNVQEKADLL---PHLQFLASQMNFLDIVPISAETGLNVD  163 (301)
T ss_dssp             ESTTTCCCHHHHH---HHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred             ECcccCccHHHHH---HHHHHHHHhcCcCceEEEECCCCCCHH
Confidence            9999975  2221   233344333433 35678888887743

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.81  E-value=5.8e-09  Score=79.58  Aligned_cols=68  Identities=16%  Similarity=0.292  Sum_probs=45.0

Q ss_pred             CeeCCC-----------CchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099          1 MFDVGG-----------QRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL   69 (174)
Q Consensus         1 iwD~~G-----------q~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil   69 (174)
                      ||||+|           ++.+++.+..++++++++|+|+|++.++         ..-...+.++.......  ...|++|
T Consensus        82 liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~---------~~~~~~l~~~~~~~~~~--~~~~~ii  150 (239)
T 3lxx_A           82 VVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYT---------EEEHKATEKILKMFGER--ARSFMIL  150 (239)
T ss_dssp             EEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCS---------SHHHHHHHHHHHHHHHH--HGGGEEE
T ss_pred             EEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCC---------HHHHHHHHHHHHHhhhh--ccceEEE
Confidence            699999           5677788888899999999999994321         11122333333332221  2359999


Q ss_pred             EEeCCchhhH
Q psy12099         70 FLNKQDLLAE   79 (174)
Q Consensus        70 v~NK~Dl~~~   79 (174)
                      |+||+|+...
T Consensus       151 v~nK~D~~~~  160 (239)
T 3lxx_A          151 IFTRKDDLGD  160 (239)
T ss_dssp             EEECGGGC--
T ss_pred             EEeCCccCCc
Confidence            9999998754

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.79  E-value=3.3e-09  Score=82.86  Aligned_cols=63  Identities=17%  Similarity=0.250  Sum_probs=42.6

Q ss_pred             CeeCCCC-------chhhhhH-------hhhhcC-------------CCEEEEEEeCCCccccccCCCCcchHHHHHHHH
Q psy12099          1 MFDVGGQ-------RDERRKW-------IQCFND-------------VTAIIFVTACSSYNMVLREDPTQNRLRESLDLF   53 (174)
Q Consensus         1 iwD~~Gq-------~~~r~~w-------~~y~~~-------------~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~   53 (174)
                      ||||+|+       ++++.++       ..|++.             +|+++++++-+          ..........++
T Consensus        69 liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~----------~~~~~~~d~~~l  138 (274)
T 3t5d_A           69 IVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPS----------GHGLKPLDIEFM  138 (274)
T ss_dssp             EEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSC----------CSSCCHHHHHHH
T ss_pred             EEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCC----------CCCCCHHHHHHH
Confidence            6999998       4566666       566654             78999999773          322222334445


Q ss_pred             HHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099         54 KSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus        54 ~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +.+. .    ++|+++|+||+|+..
T Consensus       139 ~~l~-~----~~pvi~V~nK~D~~~  158 (274)
T 3t5d_A          139 KRLH-E----KVNIIPLIAKADTLT  158 (274)
T ss_dssp             HHHT-T----TSCEEEEESSGGGSC
T ss_pred             HHHh-c----cCCEEEEEeccCCCC
Confidence            5542 2    689999999999864

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.78  E-value=2.4e-09  Score=92.37  Aligned_cols=70  Identities=21%  Similarity=0.164  Sum_probs=38.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~   78 (174)
                      ||||+||+.|.+.+..+++.++++|+|+|.++-.   ++. .........+.+..+..    .++| +++++||+|+..
T Consensus       259 iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~---~e~-gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~  329 (592)
T 3mca_A          259 IGDAPGHRDFISGMIAGASSADFAVLVVDSSQNN---FER-GFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMS  329 (592)
T ss_dssp             CCEEESSSEEEEECCC-------CCSEEEEEECC---SST-TSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGT
T ss_pred             EEECCChHHHHHHHHHHHhhCCEEEEEEECCCCc---ccc-ccccchHHHHHHHHHHH----cCCCeEEEEEecccccc
Confidence            7999999999999999999999999999993200   000 00001112222222211    1344 999999999964

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.77  E-value=1.6e-08  Score=82.47  Aligned_cols=57  Identities=16%  Similarity=0.069  Sum_probs=40.7

Q ss_pred             CCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          6 GQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         6 Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      .+++|++.+.+++++++++|+|+|++          +..     ..|...+.+.  ..+.|+++|+||+|+..+
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~----------d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~  111 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIF----------DFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPK  111 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETT----------SHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCT
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECC----------CCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCc
Confidence            46889999999999999999999994          321     1222222111  237899999999999643

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.76  E-value=3.6e-08  Score=86.58  Aligned_cols=65  Identities=15%  Similarity=0.212  Sum_probs=50.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+|+..|...+..+++.++++|+|+|.+          +... ......|.....    .+.|+++|+||+|+....
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~----------~gv~-~qt~~~~~~~~~----~~ip~ilviNKiD~~~~~  150 (704)
T 2rdo_7           86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAV----------GGVQ-PQSETVWRQANK----YKVPRIAFVNKMDRMGAN  150 (704)
T ss_pred             EEeCCCccchHHHHHHHHHHCCEEEEEEeCC----------CCCc-HHHHHHHHHHHH----cCCCEEEEEeCCCccccc
Confidence            6999999999999999999999999999993          3322 233344444332    368999999999997643

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.76  E-value=2.4e-08  Score=87.50  Aligned_cols=64  Identities=16%  Similarity=0.148  Sum_probs=50.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+|+..|+..|..+++.++++|+|+|.          ++...... ...|..+..    .+.|+++|+||+|+...
T Consensus        81 liDTPG~~df~~~~~~~l~~aD~~ilVvDa----------~~g~~~~t-~~~~~~~~~----~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           81 IIDTPGHVDFTIEVERSMRVLDGAIVVFDS----------SQGVEPQS-ETVWRQAEK----YKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             EECCCSSTTCHHHHHHHHHHCSEEEEEEET----------TTCSCHHH-HHHHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred             EEECcCccchHHHHHHHHHHCCEEEEEEEC----------CCCcchhh-HHHHHHHHH----cCCCEEEEEECCCcccC
Confidence            699999999999999999999999999999          44444333 334444433    37899999999999754

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.74  E-value=5e-09  Score=89.24  Aligned_cols=63  Identities=19%  Similarity=0.301  Sum_probs=48.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      ||||+|++.|+..+..+++.++++|+|+|.+          +... .....++..+ .   ..++|+++++||+|+..
T Consensus        86 liDTPG~~df~~~~~~~l~~aD~~IlVvDa~----------~g~~-~~t~~~~~~~-~---~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           86 LLDTPGHEDFSEDTYRTLTAVDCCLMVIDAA----------KGVE-DRTRKLMEVT-R---LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             EECCCCSTTCCHHHHHGGGGCSEEEEEEETT----------TCSC-HHHHHHHHHH-T---TTTCCEEEEEECTTSCC
T ss_pred             EEECCCChhHHHHHHHHHHHCCEEEEEEeCC----------ccch-HHHHHHHHHH-H---HcCCCEEEEEcCcCCcc
Confidence            6999999999999999999999999999994          3221 2223333332 2   24689999999999964

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.74  E-value=8.5e-08  Score=84.11  Aligned_cols=65  Identities=25%  Similarity=0.347  Sum_probs=47.8

Q ss_pred             CeeCCCCch---hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRD---ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~---~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~   77 (174)
                      ||||+|...   ....+..|+++++++|||+|.          ++..+..+...| ...+..   .+.|+++|+||+|+.
T Consensus       178 LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda----------~~~~s~~e~~~l-~~~l~~---~~~~iiiVlNK~Dl~  243 (695)
T 2j69_A          178 IVDSPGLNDTEARNELSLGYVNNCHAILFVMRA----------SQPCTLGERRYL-ENYIKG---RGLTVFFLVNAWDQV  243 (695)
T ss_dssp             EEECCCHHHHHTCHHHHTHHHHSSSEEEEEEET----------TSTTCHHHHHHH-HHHTTT---SCCCEEEEEECGGGG
T ss_pred             EEECCCCCchhhHHHHHHHHHHhCCEEEEEEeC----------CCccchhHHHHH-HHHHHh---hCCCEEEEEECcccc
Confidence            599999765   456788999999999999999          555555544333 333332   256899999999997


Q ss_pred             hH
Q psy12099         78 AE   79 (174)
Q Consensus        78 ~~   79 (174)
                      ..
T Consensus       244 ~~  245 (695)
T 2j69_A          244 RE  245 (695)
T ss_dssp             GG
T ss_pred             cc
Confidence            54

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.70  E-value=2.1e-08  Score=81.72  Aligned_cols=58  Identities=14%  Similarity=0.080  Sum_probs=40.8

Q ss_pred             CCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          5 GGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         5 ~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ..|++|++.+.+++++++.+|+|+|+++++..+     ...       +...     ..+.|+++|+||+|+..+
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~-----~~~-------l~~~-----l~~~piilV~NK~DLl~~  113 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNGSF-----IPG-------LPRF-----AADNPILLVGNKADLLPR  113 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGGGC-----CSS-------HHHH-----CTTSCEEEEEECGGGSCT
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCCch-----hhH-------HHHH-----hCCCCEEEEEEChhcCCC
Confidence            458999999999999999999999996554211     111       1121     236899999999999653

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.68  E-value=4.5e-08  Score=75.24  Aligned_cols=68  Identities=19%  Similarity=0.074  Sum_probs=39.9

Q ss_pred             CeeCCCCchhhhhHh------hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCC
Q psy12099          1 MFDVGGQRDERRKWI------QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQ   74 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~------~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~   74 (174)
                      ||||+|+......+.      .++.+ +.+|+++|.+..       .+...+............   ..+.|+++|+||+
T Consensus       113 iiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~-------~~~~~~~~~~~~~~~~~~---~~~~p~~iv~NK~  181 (262)
T 1yrb_A          113 LIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEIL-------KKPNDYCFVRFFALLIDL---RLGATTIPALNKV  181 (262)
T ss_dssp             EEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGC-------CSHHHHHHHHHHHHHHHH---HHTSCEEEEECCG
T ss_pred             EEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhh-------cCHHHHHHHHHHHHHHhc---ccCCCeEEEEecc
Confidence            699999987654432      24566 899999988311       122222222211111111   1257999999999


Q ss_pred             chhhH
Q psy12099         75 DLLAE   79 (174)
Q Consensus        75 Dl~~~   79 (174)
                      |+...
T Consensus       182 D~~~~  186 (262)
T 1yrb_A          182 DLLSE  186 (262)
T ss_dssp             GGCCH
T ss_pred             ccccc
Confidence            98654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.67  E-value=2.2e-07  Score=68.76  Aligned_cols=109  Identities=10%  Similarity=0.094  Sum_probs=66.0

Q ss_pred             CeeCCCCc----------hhhhhHhhhh---cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE
Q psy12099          1 MFDVGGQR----------DERRKWIQCF---NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV   67 (174)
Q Consensus         1 iwD~~Gq~----------~~r~~w~~y~---~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i   67 (174)
                      +|||+|+.          .+++....|+   +.++++++++|+          +...+..+. . +..++.   ..+.|+
T Consensus        76 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~----------~~~~~~~~~-~-~~~~~~---~~~~~~  140 (210)
T 1pui_A           76 LVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDI----------RHPLKDLDQ-Q-MIEWAV---DSNIAV  140 (210)
T ss_dssp             EEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEET----------TSCCCHHHH-H-HHHHHH---HTTCCE
T ss_pred             EEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEEC----------CCCCchhHH-H-HHHHHH---HcCCCe
Confidence            59999984          3444444566   578999999999          343333211 1 111222   136799


Q ss_pred             EEEEeCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccc
Q psy12099         68 ILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAV  147 (174)
Q Consensus        68 ilv~NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~  147 (174)
                      ++++||+|+......  ..                          ....+..++.       .    ....+....|||+
T Consensus       141 ~~v~nK~D~~s~~~~--~~--------------------------~~~~~~~~~~-------~----~~~~~~~~~~Sal  181 (210)
T 1pui_A          141 LVLLTKADKLASGAR--KA--------------------------QLNMVREAVL-------A----FNGDVQVETFSSL  181 (210)
T ss_dssp             EEEEECGGGSCHHHH--HH--------------------------HHHHHHHHHG-------G----GCSCEEEEECBTT
T ss_pred             EEEEecccCCCchhH--HH--------------------------HHHHHHHHHH-------h----cCCCCceEEEeec
Confidence            999999998643211  00                          0112222221       0    1123567789999


Q ss_pred             cchhHHHHHHHHHHHH
Q psy12099        148 DTENIRRVFNDCRDII  163 (174)
Q Consensus       148 d~~~i~~~f~~~~~~i  163 (174)
                      ++.+++++++.+.+.+
T Consensus       182 ~~~~~~~l~~~l~~~~  197 (210)
T 1pui_A          182 KKQGVDKLRQKLDTWF  197 (210)
T ss_dssp             TTBSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999988765

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.59  E-value=2.3e-07  Score=81.36  Aligned_cols=64  Identities=16%  Similarity=0.201  Sum_probs=50.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+|+..|...+..+++.++++|+|+|.          ++...... ...|..+..    .+.|+++|+||+|+...
T Consensus        79 liDTPG~~df~~~~~~~l~~aD~~llVvDa----------~~g~~~~~-~~~~~~~~~----~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           79 IIDTPGHVDFTVEVERSLRVLDGAVTVLDA----------QSGVEPQT-ETVWRQATT----YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             EECCCCCSSCCHHHHHHHHHCSEEEEEEET----------TTBSCHHH-HHHHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred             EEECcCCcchHHHHHHHHHHCCEEEEEECC----------CCCCcHHH-HHHHHHHHH----cCCCEEEEEECCCcccc
Confidence            699999999999999999999999999999          44444333 344444433    36899999999999754

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.51  E-value=7e-08  Score=78.15  Aligned_cols=65  Identities=14%  Similarity=0.173  Sum_probs=47.1

Q ss_pred             CeeCCCCchh-------------hhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchH-HHHHHHHHHHHcCCCCCCCc
Q psy12099          1 MFDVGGQRDE-------------RRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRL-RESLDLFKSIWNNRWLRTIS   66 (174)
Q Consensus         1 iwD~~Gq~~~-------------r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~-~~~~~~~~~i~~~~~~~~~~   66 (174)
                      +|||+|+.++             +.+...|+++++++|+|+|.+          +.... .+...+...+    ...+.|
T Consensus       140 lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~----------~~~~~~~~~~~l~~~~----~~~~~~  205 (360)
T 3t34_A          140 LIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA----------NQDLATSDAIKISREV----DPSGDR  205 (360)
T ss_dssp             EEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET----------TSCGGGCHHHHHHHHS----CTTCTT
T ss_pred             EEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc----------cCCcCCHHHHHHHHHh----cccCCC
Confidence            6999999887             788899999999999999873          22211 2333333333    224679


Q ss_pred             EEEEEeCCchhhH
Q psy12099         67 VILFLNKQDLLAE   79 (174)
Q Consensus        67 iilv~NK~Dl~~~   79 (174)
                      +++|+||+|+..+
T Consensus       206 ~i~V~nK~Dl~~~  218 (360)
T 3t34_A          206 TFGVLTKIDLMDK  218 (360)
T ss_dssp             EEEEEECGGGCCT
T ss_pred             EEEEEeCCccCCC
Confidence            9999999999754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.50  E-value=1.2e-07  Score=74.83  Aligned_cols=66  Identities=21%  Similarity=0.273  Sum_probs=44.3

Q ss_pred             CeeCCCCch-------------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE
Q psy12099          1 MFDVGGQRD-------------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV   67 (174)
Q Consensus         1 iwD~~Gq~~-------------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i   67 (174)
                      +|||+|..+             ++..+..|+++++++|+|+|.+.-+        ... .+...++.. +..   .+.|+
T Consensus       135 lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~--------~~~-~~~~~i~~~-~~~---~~~~~  201 (315)
T 1jwy_B          135 LVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD--------LAN-SDALQLAKE-VDP---EGKRT  201 (315)
T ss_dssp             EEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC--------STT-CSHHHHHHH-HCS---SCSSE
T ss_pred             EEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc--------hhh-hHHHHHHHH-hCC---CCCcE
Confidence            599999864             6778889999999999999974211        000 011122333 222   36899


Q ss_pred             EEEEeCCchhhH
Q psy12099         68 ILFLNKQDLLAE   79 (174)
Q Consensus        68 ilv~NK~Dl~~~   79 (174)
                      ++|+||+|+...
T Consensus       202 i~v~NK~Dl~~~  213 (315)
T 1jwy_B          202 IGVITKLDLMDK  213 (315)
T ss_dssp             EEEEECTTSSCS
T ss_pred             EEEEcCcccCCc
Confidence            999999998743

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.48  E-value=2.6e-07  Score=76.48  Aligned_cols=109  Identities=16%  Similarity=0.170  Sum_probs=67.5

Q ss_pred             CeeCCCCch----hhhhHhhh---hcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC-CCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRD----ERRKWIQC---FNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN-RWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~----~r~~w~~y---~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~-~~~~~~~iilv~N   72 (174)
                      +||++|...    .+.+...+   .+.++.+++++|+          + ...+.+...+..++... +.+...|.+|++|
T Consensus       209 l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDl----------s-~~~~~~ls~g~~el~~la~aL~~~P~ILVlN  277 (416)
T 1udx_A          209 LADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDA----------A-DEPLKTLETLRKEVGAYDPALLRRPSLVALN  277 (416)
T ss_dssp             EEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEET----------T-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEE
T ss_pred             EEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCC----------c-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEE
Confidence            589999832    22233333   4579999999999          4 44555555555554332 1234579999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI  152 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i  152 (174)
                      |+|+.... .  ...+.+.+.                                          ...+.+..+||+++++|
T Consensus       278 KlDl~~~~-~--~~~l~~~l~------------------------------------------~~g~~vi~iSA~~g~gi  312 (416)
T 1udx_A          278 KVDLLEEE-A--VKALADALA------------------------------------------REGLAVLPVSALTGAGL  312 (416)
T ss_dssp             CCTTSCHH-H--HHHHHHHHH------------------------------------------TTTSCEEECCTTTCTTH
T ss_pred             CCChhhHH-H--HHHHHHHHH------------------------------------------hcCCeEEEEECCCccCH
Confidence            99986541 1  011111111                                          11245667888888888


Q ss_pred             HHHHHHHHHHHHH
Q psy12099        153 RRVFNDCRDIIQR  165 (174)
Q Consensus       153 ~~~f~~~~~~i~~  165 (174)
                      +++|+.+.+.+..
T Consensus       313 ~eL~~~i~~~l~~  325 (416)
T 1udx_A          313 PALKEALHALVRS  325 (416)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            8888888887754

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.41  E-value=1.2e-06  Score=65.36  Aligned_cols=27  Identities=7%  Similarity=-0.118  Sum_probs=23.1

Q ss_pred             eeeeecccccchhHHHHHHHHHHHHHH
Q psy12099        139 CYPHFTCAVDTENIRRVFNDCRDIIQR  165 (174)
Q Consensus       139 ~~~~~tsA~d~~~i~~~f~~~~~~i~~  165 (174)
                      +.++.+||+++.|+.++|+++.+.+..
T Consensus       188 ~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          188 AKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             SEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             CeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            567789999999999999999887754

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.41  E-value=2.5e-07  Score=82.69  Aligned_cols=63  Identities=13%  Similarity=0.170  Sum_probs=50.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      ||||+|+..|...|..+++.++++|+|+|.          ++..+.... ..|..+..    .+.|+++|+||+|+..
T Consensus       102 liDTPG~~df~~~~~~~l~~aD~ailVvDa----------~~g~~~qt~-~~~~~~~~----~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A          102 LIDSPGHVDFSSEVTAALRVTDGALVVVDT----------IEGVCVQTE-TVLRQALG----ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             EECCCCCCSSCHHHHHHHHTCSEEEEEEET----------TTBSCHHHH-HHHHHHHH----TTCEEEEEEECHHHHH
T ss_pred             EEECcCchhhHHHHHHHHHhCCEEEEEEeC----------CCCCCHHHH-HHHHHHHH----cCCCeEEEEECCCcch
Confidence            699999999999999999999999999999          565555543 33444332    3689999999999973

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.41  E-value=6.9e-08  Score=74.82  Aligned_cols=66  Identities=12%  Similarity=0.120  Sum_probs=42.7

Q ss_pred             CeeCCCCchhhhhHhhhhc---------CCCEEEEEEeCCCccccccCCCCcchHHH-HHHHHHHHHcCCC-CCCCcEEE
Q psy12099          1 MFDVGGQRDERRKWIQCFN---------DVTAIIFVTACSSYNMVLREDPTQNRLRE-SLDLFKSIWNNRW-LRTISVIL   69 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~---------~~~~ii~v~d~s~~~~~~~e~~~~~~~~~-~~~~~~~i~~~~~-~~~~~iil   69 (174)
                      ||||+|++.++.....+++         +++++|||+++          +... +.. ...|+..+..... ....|+++
T Consensus        88 liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~----------d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iv  156 (262)
T 3def_A           88 IIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRL----------DVYA-VDELDKQVVIAITQTFGKEIWCKTLL  156 (262)
T ss_dssp             EEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEES----------SCSC-CCHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred             EEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcC----------CCCC-CCHHHHHHHHHHHHHhchhhhcCEEE
Confidence            6999999888766555554         88999999998          3322 222 2244444332111 11249999


Q ss_pred             EEeCCchh
Q psy12099         70 FLNKQDLL   77 (174)
Q Consensus        70 v~NK~Dl~   77 (174)
                      ++||+|+.
T Consensus       157 v~nK~Dl~  164 (262)
T 3def_A          157 VLTHAQFS  164 (262)
T ss_dssp             EEECTTCC
T ss_pred             EEeCcccC
Confidence            99999985

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.36  E-value=1.3e-06  Score=70.61  Aligned_cols=57  Identities=18%  Similarity=0.228  Sum_probs=36.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+|-..   -.....+.++.+|+|+|.+          ....+..        +. ....+.|+++|+||+|+...
T Consensus       176 iiDTpGi~~---~~~~~~~~aD~vl~V~d~~----------~~~~~~~--------l~-~~~~~~p~ivVlNK~Dl~~~  232 (355)
T 3p32_A          176 LIETVGVGQ---SEVAVANMVDTFVLLTLAR----------TGDQLQG--------IK-KGVLELADIVVVNKADGEHH  232 (355)
T ss_dssp             EEEECSCSS---HHHHHHTTCSEEEEEEESS----------TTCTTTT--------CC-TTSGGGCSEEEEECCCGGGH
T ss_pred             EEeCCCCCc---HHHHHHHhCCEEEEEECCC----------CCccHHH--------HH-HhHhhcCCEEEEECCCCcCh
Confidence            589999433   2233458999999999983          2222111        01 11234699999999999754

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.35  E-value=3.8e-07  Score=73.66  Aligned_cols=104  Identities=15%  Similarity=0.158  Sum_probs=59.1

Q ss_pred             CeeCCCCc-------------hhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE
Q psy12099          1 MFDVGGQR-------------DERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV   67 (174)
Q Consensus         1 iwD~~Gq~-------------~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i   67 (174)
                      +|||+|..             .++.++..|+++++.+|+++..+         +..-.-.+...+++.+ .   ..+.|+
T Consensus       134 lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a---------~~~~~~~~~~~i~~~~-~---~~~~~~  200 (353)
T 2x2e_A          134 LVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPA---------NSDLANSDALKVAKEV-D---PQGQRT  200 (353)
T ss_dssp             EEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEET---------TSCGGGCHHHHHHHHH-C---TTCTTE
T ss_pred             EEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecC---------CCccchhHHHHHHHHh-C---cCCCce
Confidence            69999963             56778889998877766655432         2111111222344443 2   246899


Q ss_pred             EEEEeCCchhhHHHhccccc-hh-hhhh-ccCC-CCCCCCCCCCCCCChHHHHHHH
Q psy12099         68 ILFLNKQDLLAEKVKAGKSR-LE-DYFQ-EFTR-YQTPLDATPDPGEDPIVIRAKY  119 (174)
Q Consensus        68 ilv~NK~Dl~~~~~~~~~~~-l~-~~~~-~~~~-~~~~~~a~~~~g~~~~~~~a~~  119 (174)
                      ++|+||+|+..+...  ... ++ ..++ ..++ ...+.||++|.|.++..+...+
T Consensus       201 i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          201 IGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             EEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             EEEeccccccCcchh--HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            999999999753210  001 11 1111 0111 3567888888887776666543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.35  E-value=1.4e-07  Score=74.75  Aligned_cols=26  Identities=4%  Similarity=0.032  Sum_probs=12.7

Q ss_pred             eeeeecccccchhHHHHHHHHHHHHHH
Q psy12099        139 CYPHFTCAVDTENIRRVFNDCRDIIQR  165 (174)
Q Consensus       139 ~~~~~tsA~d~~~i~~~f~~~~~~i~~  165 (174)
                      +.++++||+++ |++++|..+.+.+..
T Consensus       189 ~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          189 IKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             CCCCCCC----------CHHHHHHHHT
T ss_pred             CeEEecCCccc-cccHHHHHHHHHhhc
Confidence            56778888888 888888888877753

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.19  E-value=1.1e-06  Score=75.03  Aligned_cols=64  Identities=16%  Similarity=0.117  Sum_probs=48.9

Q ss_pred             CeeCCCCch-----------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEE
Q psy12099          1 MFDVGGQRD-----------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVIL   69 (174)
Q Consensus         1 iwD~~Gq~~-----------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iil   69 (174)
                      +|||+|+..           +...+..+++.++++|+|+|.          ++.....+...++..+..    .+.|+++
T Consensus       158 lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa----------~~~~~~~~~~~~l~~l~~----~~~pvil  223 (550)
T 2qpt_A          158 IIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDA----------HKLEISDEFSEAIGALRG----HEDKIRV  223 (550)
T ss_dssp             EEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEET----------TSCCCCHHHHHHHHHTTT----CGGGEEE
T ss_pred             EEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeC----------CcCCCCHHHHHHHHHHHh----cCCCEEE
Confidence            599999975           668888899999999999999          443333445555555432    2579999


Q ss_pred             EEeCCchhh
Q psy12099         70 FLNKQDLLA   78 (174)
Q Consensus        70 v~NK~Dl~~   78 (174)
                      |+||+|+..
T Consensus       224 VlNK~Dl~~  232 (550)
T 2qpt_A          224 VLNKADMVE  232 (550)
T ss_dssp             EEECGGGSC
T ss_pred             EEECCCccC
Confidence            999999974

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.18  E-value=4.7e-06  Score=65.41  Aligned_cols=104  Identities=16%  Similarity=0.248  Sum_probs=66.1

Q ss_pred             eeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHH
Q psy12099          2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKV   81 (174)
Q Consensus         2 wD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~   81 (174)
                      |-.|...+.++........+++||.|+|.          .++.+...  ..+..++     .+.|.++++||+|+.....
T Consensus         5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDA----------r~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~   67 (282)
T 1puj_A            5 WFPGHMAKARREVTEKLKLIDIVYELVDA----------RIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAV   67 (282)
T ss_dssp             ----CTTHHHHHHHHHGGGCSEEEEEEET----------TSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHH
T ss_pred             CCchHHHHHHHHHHHHHhhCCEEEEEEeC----------CCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHH
Confidence            43344446666667788999999999999          44433321  1122222     4689999999999976422


Q ss_pred             hccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q psy12099         82 KAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEF  125 (174)
Q Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f  125 (174)
                      .   ....+++.+.+....+.||++|.|..+..+...+.+..+.
T Consensus        68 ~---~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~  108 (282)
T 1puj_A           68 T---QQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKF  108 (282)
T ss_dssp             H---HHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHH
Confidence            1   2233445443434567899999999888887777766543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.17  E-value=5.5e-07  Score=69.92  Aligned_cols=67  Identities=12%  Similarity=0.051  Sum_probs=41.2

Q ss_pred             CeeCCCCchhhhh-------Hhhh--hcCCCEEEEEEeCCCccccccCCCCcchHHH-HHHHHHHHHcCCC-CCCCcEEE
Q psy12099          1 MFDVGGQRDERRK-------WIQC--FNDVTAIIFVTACSSYNMVLREDPTQNRLRE-SLDLFKSIWNNRW-LRTISVIL   69 (174)
Q Consensus         1 iwD~~Gq~~~r~~-------w~~y--~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~-~~~~~~~i~~~~~-~~~~~iil   69 (174)
                      ||||+|++.+...       +..|  +++++++|||+|+          +.. ++.. ...|+..+..... ....|+++
T Consensus        91 iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~----------d~~-~~~~~~~~~~~~l~~~~~~~~~~~iiv  159 (270)
T 1h65_A           91 IIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRL----------DAY-RVDNLDKLVAKAITDSFGKGIWNKAIV  159 (270)
T ss_dssp             EEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEES----------SCC-CCCHHHHHHHHHHHHHHCGGGGGGEEE
T ss_pred             EEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeC----------CCC-cCCHHHHHHHHHHHHHhCcccccCEEE
Confidence            6999999776532       2223  3579999999998          221 2222 2344444432211 11269999


Q ss_pred             EEeCCchhh
Q psy12099         70 FLNKQDLLA   78 (174)
Q Consensus        70 v~NK~Dl~~   78 (174)
                      ++||+|+..
T Consensus       160 V~nK~Dl~~  168 (270)
T 1h65_A          160 ALTHAQFSP  168 (270)
T ss_dssp             EEECCSCCC
T ss_pred             EEECcccCC
Confidence            999999854

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=97.88  E-value=4.8e-06  Score=68.44  Aligned_cols=32  Identities=25%  Similarity=0.236  Sum_probs=19.1

Q ss_pred             CeeCCCCch----hhhhHh---hhhcCCCEEEEEEeCCC
Q psy12099          1 MFDVGGQRD----ERRKWI---QCFNDVTAIIFVTACSS   32 (174)
Q Consensus         1 iwD~~Gq~~----~r~~w~---~y~~~~~~ii~v~d~s~   32 (174)
                      +|||+|+.+    .+.++.   .++++++++|+|+|+++
T Consensus        75 lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~  113 (397)
T 1wxq_A           75 MVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (397)
T ss_dssp             EEECC---------------CCCSSTTCSEEEEEEETTC
T ss_pred             EEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEeccc
Confidence            699999864    333443   45789999999999964

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.88  E-value=4.7e-06  Score=68.98  Aligned_cols=24  Identities=21%  Similarity=0.495  Sum_probs=17.8

Q ss_pred             HHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099         51 DLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus        51 ~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      .|+..+.     .++|+++|+||+|+...
T Consensus       159 ~~lk~L~-----~~v~iIlVinK~Dll~~  182 (418)
T 2qag_C          159 EFMKRLH-----EKVNIIPLIAKADTLTP  182 (418)
T ss_dssp             HHHHHHT-----TTSEEEEEEESTTSSCH
T ss_pred             HHHHHHh-----ccCcEEEEEEcccCccH
Confidence            5565542     36899999999998653

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.85  E-value=1.6e-05  Score=63.95  Aligned_cols=57  Identities=12%  Similarity=0.142  Sum_probs=35.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ||||+|.......   ..+.+|++|+|+|.+..+.          +.....   ..      .+.|.++|+||+|+...
T Consensus       153 liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~----------~~~l~~---~~------~~~p~ivv~NK~Dl~~~  209 (341)
T 2p67_A          153 IVETVGVGQSETE---VARMVDCFISLQIAGGGDD----------LQGIKK---GL------MEVADLIVINKDDGDNH  209 (341)
T ss_dssp             EEEEECCTTHHHH---HHTTCSEEEEEECC----------------CCCCH---HH------HHHCSEEEECCCCTTCH
T ss_pred             EEeCCCccchHHH---HHHhCCEEEEEEeCCccHH----------HHHHHH---hh------hcccCEEEEECCCCCCh
Confidence            5899997654432   4589999999999943321          100000   00      13588999999999753

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=97.80  E-value=0.00015  Score=61.94  Aligned_cols=65  Identities=20%  Similarity=0.252  Sum_probs=49.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |.||.|+--|..--..-++-+|++|+|+|..          .- -...+...|+....    .+.|+++|.||+|+....
T Consensus       104 lIDTPGHvDF~~Ev~raL~~~DgAvlVvda~----------~G-V~~qT~~v~~~a~~----~~lp~i~fINK~Dr~~ad  168 (548)
T 3vqt_A          104 LLDTPGHQDFSEDTYRVLTAVDSALVVIDAA----------KG-VEAQTRKLMDVCRM----RATPVMTFVNKMDREALH  168 (548)
T ss_dssp             EECCCCGGGCSHHHHHHHHSCSEEEEEEETT----------TB-SCHHHHHHHHHHHH----TTCCEEEEEECTTSCCCC
T ss_pred             EEeCCCcHHHHHHHHHHHHhcCceEEEeecC----------CC-cccccHHHHHHHHH----hCCceEEEEecccchhcc
Confidence            4799999988887778889999999999993          22 22344455666543    378999999999987543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.79  E-value=7.7e-05  Score=60.12  Aligned_cols=56  Identities=11%  Similarity=0.119  Sum_probs=33.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      ++||+|-.   .-+....+.++.+++|+|.+          .........   ..+      -..|.++++||+|+..
T Consensus       171 liDT~Gi~---~~~~~l~~~~d~vl~V~d~~----------~~~~~~~i~---~~i------l~~~~ivVlNK~Dl~~  226 (349)
T 2www_A          171 LIETVGVG---QSEFAVADMVDMFVLLLPPA----------GGDELQGIK---RGI------IEMADLVAVTKSDGDL  226 (349)
T ss_dssp             EEECCCC-----CHHHHHTTCSEEEEEECCC-------------------------------CCSCSEEEECCCSGGG
T ss_pred             EEECCCcc---hhhhhHHhhCCEEEEEEcCC----------cchhHHHhH---HHH------HhcCCEEEEeeecCCC
Confidence            58999953   22455678999999999993          322111111   111      2357899999999964

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=97.53  E-value=0.00022  Score=57.93  Aligned_cols=32  Identities=22%  Similarity=0.448  Sum_probs=25.6

Q ss_pred             CeeCCCCchhh-------hhHhhhhcCCCEEEEEEeCCC
Q psy12099          1 MFDVGGQRDER-------RKWIQCFNDVTAIIFVTACSS   32 (174)
Q Consensus         1 iwD~~Gq~~~r-------~~w~~y~~~~~~ii~v~d~s~   32 (174)
                      +|||+|+.+..       ..+..+++.++++++|+|+++
T Consensus        73 lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           73 FVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             EEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             EEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            69999997642       334557899999999999975

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=97.52  E-value=0.00012  Score=63.66  Aligned_cols=65  Identities=18%  Similarity=0.257  Sum_probs=49.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |.||.|+.-|-.-...-++-+|++|+|+|..         .-..  ..+...|+.....    ++|.++|.||+|.....
T Consensus        71 lIDTPGH~DF~~Ev~raL~~~DgavlVVDa~---------~GV~--~qT~~v~~~a~~~----~lp~i~~INKmDr~~a~  135 (638)
T 3j25_A           71 IIDTPGHMDFLAEVYRSLSVLDGAILLISAK---------DGVQ--AQTRILFHALRKM----GIPTIFFINKIDQNGID  135 (638)
T ss_dssp             CEECCCSSSTHHHHHHHHTTCSEEECCEESS---------CTTC--SHHHHHHHHHHHH----TCSCEECCEECCSSSCC
T ss_pred             EEECCCcHHHHHHHHHHHHHhCEEEEEEeCC---------CCCc--HHHHHHHHHHHHc----CCCeEEEEeccccccCC
Confidence            5799999999888888889999999999993         1222  2334556655433    67999999999987543

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.49  E-value=9.2e-05  Score=55.17  Aligned_cols=27  Identities=7%  Similarity=0.046  Sum_probs=23.4

Q ss_pred             eeeeecccccchhHHHHHHHHHHHHHH
Q psy12099        139 CYPHFTCAVDTENIRRVFNDCRDIIQR  165 (174)
Q Consensus       139 ~~~~~tsA~d~~~i~~~f~~~~~~i~~  165 (174)
                      ..++++||+++.|+.++|+.+.+.+..
T Consensus       198 ~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          198 AEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            467899999999999999999887653

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=97.37  E-value=0.00068  Score=59.97  Aligned_cols=103  Identities=15%  Similarity=0.119  Sum_probs=59.9

Q ss_pred             CeeCCCCc-------------hhhhhHhhhh-cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc
Q psy12099          1 MFDVGGQR-------------DERRKWIQCF-NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS   66 (174)
Q Consensus         1 iwD~~Gq~-------------~~r~~w~~y~-~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~   66 (174)
                      ++||+|-.             ..+.+...|. ..++.+++|+|.+          ..-.-.+...+...+.    ..+.|
T Consensus       154 LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs----------~~~~~~d~l~ll~~L~----~~g~p  219 (772)
T 3zvr_A          154 LVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPAN----------SDLANSDALKIAKEVD----PQGQR  219 (772)
T ss_dssp             EEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETT----------SCSSSCHHHHHHHHHC----TTCSS
T ss_pred             EEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCC----------CCcchhHHHHHHHHHH----hcCCC
Confidence            47898843             2344445565 4789999999993          2211122223334432    23689


Q ss_pred             EEEEEeCCchhhHHHhccccchhh--hhhc-cCC-CCCCCCCCCCCCCChHHHHHHH
Q psy12099         67 VILFLNKQDLLAEKVKAGKSRLED--YFQE-FTR-YQTPLDATPDPGEDPIVIRAKY  119 (174)
Q Consensus        67 iilv~NK~Dl~~~~~~~~~~~l~~--~~~~-~~~-~~~~~~a~~~~g~~~~~~~a~~  119 (174)
                      +++|+||+|+..+...  ...+..  ..+- .++ ...+.||++|.|.++..+...+
T Consensus       220 vIlVlNKiDlv~~~~~--~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          220 TIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             EEEEEECTTSSCTTCC--SHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             EEEEEeCcccCCcchh--hHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence            9999999999753211  011111  1110 111 4678999999999877766543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.24  E-value=0.00014  Score=56.32  Aligned_cols=51  Identities=18%  Similarity=0.173  Sum_probs=33.4

Q ss_pred             hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099         10 ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus        10 ~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      -++.......+++.+|.|+|.          .++.+....  .+. +     . +.|.++++||+|+...
T Consensus        11 a~~~~~~~l~~~D~vl~VvDa----------r~P~~~~~~--~l~-l-----l-~k~~iivlNK~DL~~~   61 (262)
T 3cnl_A           11 AKRQIKDLLRLVNTVVEVRDA----------RAPFATSAY--GVD-F-----S-RKETIILLNKVDIADE   61 (262)
T ss_dssp             TTHHHHHHHTTCSEEEEEEET----------TSTTTTSCT--TSC-C-----T-TSEEEEEEECGGGSCH
T ss_pred             HHHHHHHHHhhCCEEEEEeeC----------CCCCcCcCh--HHH-h-----c-CCCcEEEEECccCCCH
Confidence            334455678999999999999          333222110  001 1     1 6899999999999754

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.90  E-value=0.0032  Score=51.05  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=25.7

Q ss_pred             CeeCCCCchhh----hh---HhhhhcCCCEEEEEEeCCC
Q psy12099          1 MFDVGGQRDER----RK---WIQCFNDVTAIIFVTACSS   32 (174)
Q Consensus         1 iwD~~Gq~~~r----~~---w~~y~~~~~~ii~v~d~s~   32 (174)
                      +|||+|+.++.    .+   +..++++++++++|+|+++
T Consensus        70 lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           70 FVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             EEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             EEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence            69999998764    23   3456899999999999975

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=96.80  E-value=0.00087  Score=58.84  Aligned_cols=65  Identities=14%  Similarity=0.170  Sum_probs=48.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +.||.|+--|..--..-++-+|++|+|+|..          .-- ...+...|+.....    +.|.++|.||+|+....
T Consensus        89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDav----------eGV-~~qT~~v~~~a~~~----~lp~i~~iNKiDr~~a~  153 (709)
T 4fn5_A           89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGT----------SGV-EPQSETVWRQANKY----GVPRIVYVNKMDRQGAN  153 (709)
T ss_dssp             EECCCSCTTCHHHHHHHHHHCSEEEEEEETT----------TCS-CHHHHHHHHHHHHH----TCCEEEEEECSSSTTCC
T ss_pred             EEeCCCCcccHHHHHHHHHHhCeEEEEEECC----------CCC-chhHHHHHHHHHHc----CCCeEEEEccccccCcc
Confidence            4699999988887777888999999999993          222 23344556665543    68999999999987543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.56  E-value=0.0074  Score=48.79  Aligned_cols=48  Identities=21%  Similarity=0.259  Sum_probs=27.2

Q ss_pred             hcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099         18 FNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus        18 ~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      -.++|.+++|.+.          ...-+......++.. ..   ..+.|.+||+||+||..+
T Consensus       128 ~anvD~v~iv~a~----------~P~~~~~~i~r~L~~-a~---~~~~~~iivlNK~DL~~~  175 (358)
T 2rcn_A          128 AANIDQIVIVSAI----------LPELSLNIIDRYLVG-CE---TLQVEPLIVLNKIDLLDD  175 (358)
T ss_dssp             EECCCEEEEEEES----------TTTCCHHHHHHHHHH-HH---HHTCEEEEEEECGGGCCH
T ss_pred             HhcCCEEEEEEeC----------CCCCCHHHHHHHHHH-HH---hcCCCEEEEEECccCCCc
Confidence            3588999988766          221121211111111 11   135778999999999754

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.39  E-value=0.0011  Score=52.57  Aligned_cols=84  Identities=12%  Similarity=0.095  Sum_probs=43.9

Q ss_pred             HhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHh-ccccchhhhh
Q psy12099         14 WIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVK-AGKSRLEDYF   92 (174)
Q Consensus        14 w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~-~~~~~l~~~~   92 (174)
                      +..-..++|.+++|+|+          ..+..-...++-+--...   ..+.|.+|++||+||..+... .....+.+++
T Consensus        80 ~R~~~anvD~v~~V~~~----------~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y  146 (307)
T 1t9h_A           80 IRPPICNVDQAVLVFSA----------VQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDY  146 (307)
T ss_dssp             TTTTEECCCEEEEEEES----------TTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHhCCEEEEEEeC----------CCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHH
Confidence            33446799999999999          322211112222222222   246888999999999754210 0001333444


Q ss_pred             hccCCCCCCCCCCCCCCC
Q psy12099         93 QEFTRYQTPLDATPDPGE  110 (174)
Q Consensus        93 ~~~~~~~~~~~a~~~~g~  110 (174)
                      ...+....+.||.+|.|.
T Consensus       147 ~~~g~~v~~~sa~~~~g~  164 (307)
T 1t9h_A          147 RNIGYDVYLTSSKDQDSL  164 (307)
T ss_dssp             HHHTCCEEECCHHHHTTC
T ss_pred             HhCCCeEEEEecCCCCCH
Confidence            333334455566555553

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.17  E-value=0.011  Score=47.29  Aligned_cols=27  Identities=4%  Similarity=0.021  Sum_probs=19.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeC
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTAC   30 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~   30 (174)
                      ++||+|...-.   ......++.+++++|.
T Consensus       152 liDT~Gi~~~~---~~v~~~~d~vl~v~d~  178 (337)
T 2qm8_A          152 LVETVGVGQSE---TAVADLTDFFLVLMLP  178 (337)
T ss_dssp             EEEECSSSSCH---HHHHTTSSEEEEEECS
T ss_pred             EEECCCCCcch---hhHHhhCCEEEEEEcC
Confidence            47899975422   2235789999999998

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=95.39  E-value=0.015  Score=47.71  Aligned_cols=33  Identities=12%  Similarity=0.238  Sum_probs=22.5

Q ss_pred             CeeCCCCchhhh-------hHhhhhcCCCEEEEEEeCCCc
Q psy12099          1 MFDVGGQRDERR-------KWIQCFNDVTAIIFVTACSSY   33 (174)
Q Consensus         1 iwD~~Gq~~~r~-------~w~~y~~~~~~ii~v~d~s~~   33 (174)
                      +|||+|+.+.++       .|..++++++++++|+|+++-
T Consensus        90 lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~  129 (396)
T 2ohf_A           90 VVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFED  129 (396)
T ss_dssp             EEECCC-----------CCHHHHHHHTSSSEEEEEEC---
T ss_pred             EEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence            699999988665       688899999999999999653

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=85.59  E-value=1.6  Score=36.69  Aligned_cols=59  Identities=17%  Similarity=0.263  Sum_probs=34.1

Q ss_pred             CeeCCCCchhh-hhHhhh-----hcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcE-EEEEeC
Q psy12099          1 MFDVGGQRDER-RKWIQC-----FNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISV-ILFLNK   73 (174)
Q Consensus         1 iwD~~Gq~~~r-~~w~~y-----~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~i-ilv~NK   73 (174)
                      |+||+|..... .++...     .-.++.+++|+|.+          ...........|..        ..|+ .+|+||
T Consensus       188 IIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~----------~g~~~~~~a~~~~~--------~~~i~gvVlNK  249 (504)
T 2j37_W          188 IVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDAS----------IGQACEAQAKAFKD--------KVDVASVIVTK  249 (504)
T ss_dssp             EEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETT----------CCTTHHHHHHHHHH--------HHCCCCEEEEC
T ss_pred             EEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecc----------ccccHHHHHHHHHh--------hcCceEEEEeC
Confidence            58999986432 222111     22789999999993          32222222222222        1465 788999


Q ss_pred             Cchh
Q psy12099         74 QDLL   77 (174)
Q Consensus        74 ~Dl~   77 (174)
                      .|..
T Consensus       250 ~D~~  253 (504)
T 2j37_W          250 LDGH  253 (504)
T ss_dssp             TTSC
T ss_pred             Cccc
Confidence            9975

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=83.02  E-value=0.93  Score=36.68  Aligned_cols=50  Identities=4%  Similarity=0.046  Sum_probs=30.4

Q ss_pred             hhhcCCCEEEEEEeCCCccccccCCCCcchHHHH-HHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099         16 QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRES-LDLFKSIWNNRWLRTISVILFLNKQDLL   77 (174)
Q Consensus        16 ~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~-~~~~~~i~~~~~~~~~~iilv~NK~Dl~   77 (174)
                      ...+.++.+++|+|.          +++.+-.+. ...+..+  ...+.+.|.++++||.|..
T Consensus       145 ~~i~~ad~il~vvD~----------~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          145 AVARTCNLLFIILDV----------NKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             HHHHHCSEEEEEEET----------TSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSSS
T ss_pred             HHHHhcCcccccccc----------CccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhhh
Confidence            456789999999999          444222221 1222221  1224467888899999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	3e-54
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	3e-31
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	9e-29
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-23

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  169 bits (428), Expect = 3e-54
 Identities = 151/171 (88%), Positives = 159/171 (92%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQRDERRKWIQCFNDVTAIIFV A SSYNMV+RED   NRL+E+L+LFKSIWNNR
Sbjct: 51  MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR 110

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           WLRTISVILFLNKQDLLAEKV AGKS++EDYF EF RY TP DATP+PGEDP V RAKYF
Sbjct: 111 WLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYF 170

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQY 171
           IRDEFLRISTASGDG+HYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQY
Sbjct: 171 IRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLRQY 221

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (273), Expect = 3e-31
 Identities = 69/169 (40%), Positives = 97/169 (57%), Gaps = 16/169 (9%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           M DVGGQR ER++W +CF+ VT+I+F+ + S ++ VL ED   NRL ESL++F++I NNR
Sbjct: 48  MVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR 107

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
               +S+ILFLNK DLL EKV+     ++DYF EF      L               + F
Sbjct: 108 VFSNVSIILFLNKTDLLEEKVQ--VVSIKDYFLEFEGDPHCLRD------------VQKF 153

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           + + F          +   Y HFT A++TENIR VF D +D I   +L+
Sbjct: 154 LVECFR--GKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNLK 200

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (257), Expect = 9e-29
 Identities = 76/169 (44%), Positives = 98/169 (57%), Gaps = 17/169 (10%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           M DVGGQR ERRKWI CF +VT+I+F+ A S Y+ VL E   +NR+ ES  LF++I    
Sbjct: 49  MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 108

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W +  SVILFLNK+DLL EK+    S L DYF E+   Q    A            A+ F
Sbjct: 109 WFQNSSVILFLNKKDLLEEKIM--YSHLVDYFPEYDGPQRDAQA------------AREF 154

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLR 169
           I   F+ ++    D     Y HFTCA DTENIR VF   +D I +++L+
Sbjct: 155 ILKMFVDLNP---DSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLK 200

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 89.6 bits (221), Expect = 2e-23
 Identities = 72/165 (43%), Positives = 95/165 (57%), Gaps = 17/165 (10%)

Query: 1   MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR 60
           MFDVGGQR ER+KWI CF  VTAIIF  A S Y++VL ED   NR+ ES+ LF SI NN+
Sbjct: 46  MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK 105

Query: 61  WLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYF 120
           W    S+ILFLNK+DL  EK+K  KS L   + E+    T  +A               +
Sbjct: 106 WFTDTSIILFLNKKDLFEEKIK--KSPLTICYPEYAGSNTYEEA-------------AAY 150

Query: 121 IRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQR 165
           I+ +F  ++          Y HFTCA DT+N++ VF+   D+I +
Sbjct: 151 IQCQFEDLNKR--KDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 193

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	100.0
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	100.0
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.97
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.96
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.85
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.85
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.84
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.83
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.83
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.83
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.82
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.82
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.82
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.82
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.82
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.82
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.82
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.81
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.81
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.81
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.8
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.8
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.79
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.79
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.78
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.78
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.77
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.74
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.74
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.74
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.73
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.71
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.7
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.68
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.63
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.47
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.46
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.4
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.29
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.12
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.08
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.06
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.04
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.02
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.98
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	98.95
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	98.85
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.78
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.68
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.68
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.65
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.63
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	98.56
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.51
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.35
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.25
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.0
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.92
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.91
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	97.68
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.68
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	97.67
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.57
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.34
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.34
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.31
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.2
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.79
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.43
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	92.83
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	90.66
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	90.59
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	88.14
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	86.97

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.1e-39  Score=244.24  Aligned_cols=171  Identities=88%  Similarity=1.435  Sum_probs=163.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||+|||+++|++|.+||++++++|+|+|+++++..+.++...+++.++..+|..+++++.+.++|++|+|||+|+++++
T Consensus        51 ~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k  130 (221)
T d1azta2          51 MFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEK  130 (221)
T ss_dssp             EEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHH
T ss_pred             EEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhh
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      +..++.++++|||+|.+...+.++.+..|.+.++++|..||+.+|.++++.....++.+|.|+|||+|+.||+.+|..+.
T Consensus       131 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~  210 (221)
T d1azta2         131 VLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCR  210 (221)
T ss_dssp             HHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTH
T ss_pred             hccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHH
Confidence            87556789999999999999999999999999999999999999999988766677889999999999999999999999


Q ss_pred             HHHHHhhhhhc
Q psy12099        161 DIIQRMHLRQY  171 (174)
Q Consensus       161 ~~i~~~~~~~~  171 (174)
                      ++|++++||++
T Consensus       211 d~I~~~~l~~~  221 (221)
T d1azta2         211 DIIQRMHLRQY  221 (221)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHhhcC
Confidence            99999999974

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.6e-33  Score=205.85  Aligned_cols=153  Identities=45%  Similarity=0.776  Sum_probs=133.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++||++++.+|.+||++++++++++|+++++..+.++...++++++..+|.++++++...++|++|+|||+|+++++
T Consensus        48 ~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~  127 (200)
T d1zcba2          48 MVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEK  127 (200)
T ss_dssp             EEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHH
T ss_pred             eecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhh
Confidence            59999999999999999999999999999999999999999999999999999999999989999999999999999998


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      +.  ..++.++||+|.            |.+++.+.|.+|+...|......  ...+.+|+|+|||+|++||+++|+.+.
T Consensus       128 ~~--~~~~~~~f~~~~------------~~~~~~~~~~~~~~~~f~~~~~~--~~~~~iy~~~TsA~d~~ni~~vf~~v~  191 (200)
T d1zcba2         128 VQ--VVSIKDYFLEFE------------GDPHCLRDVQKFLVECFRGKRRD--QQQRPLYHHFTTAINTENIRLVFRDVK  191 (200)
T ss_dssp             TT--TCCGGGTCTTCC------------SCTTCHHHHHHHHHHHHHTTCSS--CC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred             cc--ccHHHHhCcccc------------CCcchHHHHHHHHHHHHHHhccC--CCCCceEEEEeeeeCcHHHHHHHHHHH
Confidence            88  788999999998            45567889999999999987653  456789999999999999999999999


Q ss_pred             HHHHHhhhh
Q psy12099        161 DIIQRMHLR  169 (174)
Q Consensus       161 ~~i~~~~~~  169 (174)
                      +.|++++||
T Consensus       192 d~i~~~~l~  200 (200)
T d1zcba2         192 DTILHDNLK  200 (200)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            999999986

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.6e-30  Score=191.11  Aligned_cols=152  Identities=49%  Similarity=0.841  Sum_probs=141.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++||++++..|.+||++++++++|+|+++++..+..+.+.+++.+++.+|..+++++...++|+++++||+|++..+
T Consensus        49 ~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~  128 (200)
T d2bcjq2          49 MVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEK  128 (200)
T ss_dssp             EEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHH
T ss_pred             eccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhc
Confidence            59999999999999999999999999999999999999999999999999999999999888999999999999999998


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      +.  ...+..++|++.            +..++.+.+.+|+..+|.+.+.   ...+.+++|+|||+||+||+++|+.|.
T Consensus       129 ~~--~~~~~~~~~~~~------------~~~~~~~~~~~~i~~~f~~~~~---~~~~~~~~~~tSAk~~~ni~~vF~~i~  191 (200)
T d2bcjq2         129 IM--YSHLVDYFPEYD------------GPQRDAQAAREFILKMFVDLNP---DSDKIIYSHFTCATDTENIRFVFAAVK  191 (200)
T ss_dssp             TT--TSCHHHHSTTCC------------SCSSCHHHHHHHHHHHHHTTCS---CTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cc--chHHHHhccccc------------CCchhHHHHHHHHHHHHHHhcc---cCCCceEEEEeEEEcCHhHHHHHHHHH
Confidence            87  678888998887            3456788999999999999877   567889999999999999999999999


Q ss_pred             HHHHHhhhh
Q psy12099        161 DIIQRMHLR  169 (174)
Q Consensus       161 ~~i~~~~~~  169 (174)
                      +.|+++|||
T Consensus       192 ~~I~~~nl~  200 (200)
T d2bcjq2         192 DTILQLNLK  200 (200)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhcC
Confidence            999999986

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=7.6e-29  Score=182.47  Aligned_cols=150  Identities=47%  Similarity=0.817  Sum_probs=135.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||||||++++++|.+||++++++++|+|+++++.........+.+.+...+|..++++....++|+++++||+|++.++
T Consensus        46 i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~  125 (195)
T d1svsa1          46 MFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEK  125 (195)
T ss_dssp             EEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHH
T ss_pred             eeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhh
Confidence            69999999999999999999999999999999999998888899999999999999999888999999999999999998


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      +.  ..++...||++.+             ....+++..++..+|.++...  ...+.+++|+|||+|++||+++|+.+.
T Consensus       126 ~~--~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~f~~~~~~--~~~~~~~~~~tSA~~~~nv~~~F~~v~  188 (195)
T d1svsa1         126 IK--KSPLTICYPEYAG-------------SNTYEEAAAYIQCQFEDLNKR--KDTKEIYTHFTCATDTKNVQFVFDAVT  188 (195)
T ss_dssp             TT--TSCGGGTCTTCCS-------------CSSHHHHHHHHHHHHHTTCSC--TTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cc--chHHHHHhhhhcC-------------cccHHHHHHHHHHHHHHHhcc--cCCCcceeEEEEeECCHhHHHHHHHHH
Confidence            88  7788888888764             234677888999999988663  446789999999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.|+++|
T Consensus       189 ~~il~~n  195 (195)
T d1svsa1         189 DVIIKNN  195 (195)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9999875

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.7e-23  Score=148.38  Aligned_cols=114  Identities=18%  Similarity=0.180  Sum_probs=85.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++||++++.+|.+|+++++++|+|||+          +++.+++.+..|+..+.......++|++|+|||+|+..++
T Consensus        52 i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~----------t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~  121 (168)
T d2gjsa1          52 VYDIWEQDGGRWLPGHCMAMGDAYVIVYSV----------TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR  121 (168)
T ss_dssp             EEECC-------CHHHHHTSCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGC
T ss_pred             eeecccccccceecccchhhhhhhceeccc----------cccccccccccccchhhcccccccceEEEeecccchhhhc
Confidence            699999999999999999999999999999          8999999999999998776556778999999999997643


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              +..++..|..             ...+.+++|||++|.||+++|+.+.
T Consensus       122 ~v------------------------------~~~~~~~~~~-------------~~~~~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1         122 EV------------------------------SVDEGRACAV-------------VFDCKFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------HHTSEEEECBTTTTBSHHHHHHHHH
T ss_pred             ch------------------------------hHHHHHHHHH-------------hcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            11                              1223333321             1235678999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.|+.+.
T Consensus       159 ~~i~~~~  165 (168)
T d2gjsa1         159 RQIRLRR  165 (168)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9887653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.3e-21  Score=142.41  Aligned_cols=124  Identities=15%  Similarity=0.174  Sum_probs=93.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||++|++.++..|..||++++++|+|||+          +++.+|++...|+...+... .+++|++|+|||+|+....
T Consensus        54 i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~Sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~  122 (177)
T d1kmqa_          54 LWDTAGLEDYDRLRPLSYPDTDVILMCFSI----------DSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDE  122 (177)
T ss_dssp             EEEECCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECGGGTTCH
T ss_pred             ccccCccchhcccchhhcccchhhhhhccc----------chhHHHHHHHHHHHHHHHHh-CCCCceEEeeecccccchh
Confidence            699999999999999999999999999999          89999999998888877654 3679999999999997654


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  ...+..    ...            ..-..+++.++...            ...+.+++|||+++.||+++|+.+.
T Consensus       123 ~~--~~~~~~----~~~------------~~v~~~e~~~~a~~------------~~~~~~~E~SAkt~~gi~e~F~~i~  172 (177)
T d1kmqa_         123 HT--RRELAK----MKQ------------EPVKPEEGRDMANR------------IGAFGYMECSAKTKDGVREVFEMAT  172 (177)
T ss_dssp             HH--HHHHHH----TTC------------CCCCHHHHHHHHHH------------TTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred             hH--HHHHHH----hhc------------ccccHHHHHHHHHH------------cCCcEEEEecCCCCcCHHHHHHHHH
Confidence            22  111111    110            00124445554321            1235788999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.+++
T Consensus       173 ~~~l~  177 (177)
T d1kmqa_         173 RAALQ  177 (177)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            88763

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.85  E-value=1.9e-21  Score=141.99  Aligned_cols=117  Identities=21%  Similarity=0.313  Sum_probs=91.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|+++++..|..|+++++++|+|+|+          ++..++.+...|+...++.....+.|++|++||+|+....
T Consensus        65 i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~----------~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~  134 (182)
T d1moza_          65 VWDLGGQTSIRPYWRCYYADTAAVIFVVDS----------TDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL  134 (182)
T ss_dssp             EEEEC----CCTTGGGTTTTEEEEEEEEET----------TCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC
T ss_pred             EEecccccccchhHHhhhccceeEEEEeee----------cccccchhHHHHHHHHHHhhccCCcceEEEEEeecccccc
Confidence            699999999999999999999999999999          8999999999999998888778889999999999996421


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      -.   ..+.+.+.                                  +..   +..+.+.+++|||++|+||.++|++|.
T Consensus       135 ~~---~~i~~~~~----------------------------------~~~---~~~~~~~~~e~SA~~g~gv~e~~~~l~  174 (182)
T d1moza_         135 SA---SEVSKELN----------------------------------LVE---LKDRSWSIVASSAIKGEGITEGLDWLI  174 (182)
T ss_dssp             CH---HHHHHHTT----------------------------------TTT---CCSSCEEEEEEBGGGTBTHHHHHHHHH
T ss_pred             CH---HHHHHHHH----------------------------------HHH---HhhCCCEEEEEECCCCCCHHHHHHHHH
Confidence            00   11111110                                  000   334567889999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.|.++.
T Consensus       175 ~~i~~~~  181 (182)
T d1moza_         175 DVIKEEQ  181 (182)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcC
Confidence            9987764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.2e-22  Score=144.77  Aligned_cols=116  Identities=17%  Similarity=0.191  Sum_probs=95.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||+.++.+|.+|+++++++|+|||+          ++..+++.+..|+..+........+|++|++||.|+..++
T Consensus        68 i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~  137 (186)
T d2f7sa1          68 LWDTAGQERFRSLTTAFFRDAMGFLLMFDL----------TSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR  137 (186)
T ss_dssp             EEEEESHHHHHHHHHHHHTTCCEEEEEEET----------TCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGC
T ss_pred             cccCCcchhhHHHHHHHHhcCCEEEEEEec----------cccccceeeeeccchhhhhccCCCceEEEEeeeccchhhh
Confidence            699999999999999999999999999999          8999999999999888777666788999999999997643


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..|..             ...+.+++|||+++.||+++|+++.
T Consensus       138 ~v------------------------------~~~e~~~~~~-------------~~~~~~~e~Sak~~~~i~e~f~~l~  174 (186)
T d2f7sa1         138 EV------------------------------NERQARELAD-------------KYGIPYFETSAATGQNVEKAVETLL  174 (186)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------HTTCCEEEEBTTTTBTHHHHHHHHH
T ss_pred             cc------------------------------hHHHHHHHHH-------------HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11                              1233444422             1235678999999999999999999


Q ss_pred             HHHHHhhhh
Q psy12099        161 DIIQRMHLR  169 (174)
Q Consensus       161 ~~i~~~~~~  169 (174)
                      +.|+++.-+
T Consensus       175 ~~i~~k~~~  183 (186)
T d2f7sa1         175 DLIMKRMEQ  183 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999876544

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.8e-21  Score=140.93  Aligned_cols=113  Identities=19%  Similarity=0.205  Sum_probs=91.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||++++.+|+.|+++++++|+|+|+          ++..++.....|+..+.+. ....+|++|+|||+|+..+.
T Consensus        58 i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~  126 (171)
T d2ew1a1          58 IWDTAGQERFRSITQSYYRSANALILTYDI----------TCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERR  126 (171)
T ss_dssp             EEEECCSGGGHHHHGGGSTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGC
T ss_pred             EEECCCchhhHHHHHHHHhccceEEEeeec----------ccchhhhhhhhhhhhhccc-ccccccEEEEEeeccccccc
Confidence            699999999999999999999999999999          8999999999999887654 34578999999999987543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..|...             ..+.+++|||++|.||+++|.++.
T Consensus       127 ~v------------------------------~~~~~~~~~~~-------------~~~~~~~~SAktg~gV~e~f~~l~  163 (171)
T d2ew1a1         127 EV------------------------------SQQRAEEFSEA-------------QDMYYLETSAKESDNVEKLFLDLA  163 (171)
T ss_dssp             SS------------------------------CHHHHHHHHHH-------------HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             ch------------------------------hhhHHHHHHHh-------------CCCEEEEEccCCCCCHHHHHHHHH
Confidence            11                              12234444221             225678999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      ..++++.
T Consensus       164 ~~l~~~~  170 (171)
T d2ew1a1         164 CRLISEA  170 (171)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9888653

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.9e-21  Score=141.26  Aligned_cols=113  Identities=19%  Similarity=0.167  Sum_probs=93.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|+++++..|..|+++++++|+|||+          ++..++.....|+..+.+.....++|++|||||+|+...+
T Consensus        58 ~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~  127 (173)
T d2fn4a1          58 ILDTAGQEEFGAMREQYMRAGHGFLLVFAI----------NDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQR  127 (173)
T ss_dssp             EEECCCTTTTSCCHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGC
T ss_pred             ccccccccccccccchhhccceeeeeeccc----------ccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhcc
Confidence            599999999999999999999999999999          8999999999999998776556789999999999986543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..             ...+.+++|||++|.||+++|+.+.
T Consensus       128 ~~------------------------------~~~~~~~~~~-------------~~~~~~~e~Sak~g~gv~e~f~~l~  164 (173)
T d2fn4a1         128 QV------------------------------PRSEASAFGA-------------SHHVAYFEASAKLRLNVDEAFEQLV  164 (173)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------HTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             cc------------------------------chhhhhHHHH-------------hcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            11                              1233444422             1336678999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.|.++
T Consensus       165 ~~i~k~  170 (173)
T d2fn4a1         165 RAVRKY  170 (173)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=9.6e-22  Score=142.37  Aligned_cols=113  Identities=18%  Similarity=0.167  Sum_probs=94.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++.++..|+++++++|+|||+          +++++|..+..|+..+.+.....+.|++|+|||+|+...+
T Consensus        56 i~d~~g~~~~~~~~~~~~~~~~~~llv~d~----------~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~  125 (169)
T d1x1ra1          56 VLDTAGQEEFSAMREQYMRTGDGFLIVYSV----------TDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR  125 (169)
T ss_dssp             EEECCSCGGGCSSHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTC
T ss_pred             ccccccccccccchhhhhhhccEEEEeccc----------ccchhhhccchhhHHHHhhccccCccEEEEecccchhhhc
Confidence            699999999999999999999999999999          8999999999999998776555689999999999987543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccch-hHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTE-NIRRVFNDC  159 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~-~i~~~f~~~  159 (174)
                      ..                              +.++|.+|...             ..+.+++|||+++. ||+++|..+
T Consensus       126 ~v------------------------------~~e~~~~~~~~-------------~~~~~~e~Sak~~~~nV~~~F~~l  162 (169)
T d1x1ra1         126 KV------------------------------TRDQGKEMATK-------------YNIPYIETSAKDPPLNVDKTFHDL  162 (169)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCCEEEEBCSSSCBSHHHHHHHH
T ss_pred             ee------------------------------ehhhHHHHHHH-------------cCCEEEEEcCCCCCcCHHHHHHHH
Confidence            11                              13445555332             23567899999886 999999999


Q ss_pred             HHHHHHh
Q psy12099        160 RDIIQRM  166 (174)
Q Consensus       160 ~~~i~~~  166 (174)
                      .+.|+++
T Consensus       163 ~~~i~~~  169 (169)
T d1x1ra1         163 VRVIRQQ  169 (169)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9998764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4e-21  Score=138.56  Aligned_cols=112  Identities=20%  Similarity=0.182  Sum_probs=92.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++.+|..|+++++++|+|+|+          ++..+++++..|+..+.+....+++|++|+|||+|+....
T Consensus        55 ~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~  124 (167)
T d1c1ya_          55 ILDTAGTEQFTAMRDLYMKNGQGFALVYSI----------TAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER  124 (167)
T ss_dssp             EEEECSSCSSTTHHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGC
T ss_pred             cccccCcccccccccccccccceeEEeeec----------cchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCccccc
Confidence            699999999999999999999999999999          8999999999999998776556789999999999997643


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..+            ...+.+++|||++|.||.++|.++.
T Consensus       125 ~~------------------------------~~~~~~~~~~~------------~~~~~~~e~Sak~g~gv~e~F~~l~  162 (167)
T d1c1ya_         125 VV------------------------------GKEQGQNLARQ------------WCNCAFLESSAKSKINVNEIFYDLV  162 (167)
T ss_dssp             CS------------------------------CHHHHHHHHHH------------TTSCEEEECBTTTTBSHHHHHHHHH
T ss_pred             cc------------------------------chhHHHHHHHH------------hCCCEEEEEcCCCCcCHHHHHHHHH
Confidence            22                              12333333221            1236778999999999999999999


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.|.
T Consensus       163 ~~i~  166 (167)
T d1c1ya_         163 RQIN  166 (167)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            8774

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=4.1e-21  Score=138.83  Aligned_cols=112  Identities=19%  Similarity=0.183  Sum_probs=90.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||+.++.+|..|+++++++|+|+|+          ++.+++.....|+..+... ...+.|+++++||+|+...+
T Consensus        58 ~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~----------~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~  126 (169)
T d3raba_          58 IWDTAGQERYRTITTAYYRGAMGFILMYDI----------TNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDER  126 (169)
T ss_dssp             EEEECCSGGGHHHHHTTTTTCCEEEEEEET----------TCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCGGGC
T ss_pred             EEECCCchhhHHHHHHHHhcCCEEEEEEEC----------ccchhhhhhhhhhhhhhcc-cCCcceEEEEEeeccccccc
Confidence            699999999999999999999999999999          8999999998888776443 35678999999999986543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+...             ..+.+++|||++|.||+++|+++.
T Consensus       127 ~v------------------------------~~~~~~~~~~~-------------~~~~~~e~Sak~g~gv~e~f~~l~  163 (169)
T d3raba_         127 VV------------------------------SSERGRQLADH-------------LGFEFFEASAKDNINVKQTFERLV  163 (169)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             cc------------------------------chhhhHHHHHH-------------cCCEEEEecCCCCcCHHHHHHHHH
Confidence            11                              12334444321             235688999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.|+++
T Consensus       164 ~~i~ek  169 (169)
T d3raba_         164 DVICEK  169 (169)
T ss_dssp             HHHHTC
T ss_pred             HHHhhC
Confidence            988753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.83  E-value=1.4e-20  Score=136.45  Aligned_cols=113  Identities=23%  Similarity=0.432  Sum_probs=92.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++..|.+++++++++|||+|+          ++..++..+..|+...+++....+.|++|++||+|+..+.
T Consensus        60 i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~----------s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~  129 (173)
T d1e0sa_          60 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDC----------ADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM  129 (173)
T ss_dssp             EEEESCCGGGHHHHGGGTTTCCEEEEEEET----------TCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC
T ss_pred             EecCCCcchhhhHHHhhhcccceEEEEEec----------ccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccc
Confidence            699999999999999999999999999999          8999999999999999988878899999999999996532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..   ..+...+                                  .+..   ...+.+.+++|||++|+||.++|++|.
T Consensus       130 ~~---~~i~~~~----------------------------------~~~~---~~~~~~~~~e~SA~tg~gv~e~~~~l~  169 (173)
T d1e0sa_         130 KP---HEIQEKL----------------------------------GLTR---IRDRNWYVQPSCATSGDGLYEGLTWLT  169 (173)
T ss_dssp             CH---HHHHHHT----------------------------------TGGG---CCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             cH---HHHHHHH----------------------------------HHHH---HHhCCCEEEEeeCCCCcCHHHHHHHHH
Confidence            11   0111110                                  1111   345678899999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.+
T Consensus       170 ~~~  172 (173)
T d1e0sa_         170 SNY  172 (173)
T ss_dssp             HHC
T ss_pred             Hhc
Confidence            754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.7e-20  Score=137.54  Aligned_cols=123  Identities=13%  Similarity=0.197  Sum_probs=92.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++||+.++.+|..||++++++|+|||+          +++++|+....|+...++.. ..++|++|||||+|+....
T Consensus        61 i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~----------t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~  129 (185)
T d2atxa1          61 LYDTAGQEDYDRLRPLSYPMTDVFLICFSV----------VNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDP  129 (185)
T ss_dssp             EECCCCSSSSTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCH
T ss_pred             cccccccchhhhhhhhcccccceeeecccc----------chHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccch
Confidence            699999999999999999999999999999          89999999888888877653 4689999999999997643


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  .....    +-..  .          .-..+++.++..+.            ..+.+++|||+++.||+++|+.+.
T Consensus       130 ~~--~~~~~----~~~~--r----------~v~~~~~~~~a~~~------------~~~~~~E~SAk~~~gv~e~F~~li  179 (185)
T d2atxa1         130 KT--LARLN----DMKE--K----------PICVEQGQKLAKEI------------GACCYVECSALTQKGLKTVFDEAI  179 (185)
T ss_dssp             HH--HHHHT----TTTC--C----------CCCHHHHHHHHHHH------------TCSCEEECCTTTCTTHHHHHHHHH
T ss_pred             hh--hhhhh----hccc--c----------cccHHHHHHHHHHc------------CCCEEEEecCCCCcCHHHHHHHHH
Confidence            22  00100    0000  0          01245555553221            225678999999999999999998


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.|+
T Consensus       180 ~~il  183 (185)
T d2atxa1         180 IAIL  183 (185)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            8875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9e-21  Score=136.58  Aligned_cols=111  Identities=16%  Similarity=0.078  Sum_probs=91.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++.++..++++++++|+|||+          ++.+++..+..|+..+.+.....++|++|+|||+|+..++
T Consensus        56 i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r  125 (167)
T d1xtqa1          56 LVDTAGQDEYSIFPQTYSIDINGYILVYSV----------TSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER  125 (167)
T ss_dssp             EEECCCCCTTCCCCGGGTSSCCEEEEEEET----------TCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGC
T ss_pred             ecccccccccccccchhhhhhhhhhhhccc----------chhhhhhhhhhhhhhhhhcccccccceeeecccccccccc
Confidence            699999999999999999999999999999          8999999999999998876556789999999999986543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              +.+++.+|..+             ..+.+++|||+++.||+++|+.+.
T Consensus       126 ~v------------------------------~~~~~~~~a~~-------------~~~~~~e~Sak~~~~v~~~f~~li  162 (167)
T d1xtqa1         126 VI------------------------------SYEEGKALAES-------------WNAAFLESSAKENQTAVDVFRRII  162 (167)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             ch------------------------------hHHHHHHHHHH-------------cCCEEEEEecCCCCCHHHHHHHHH
Confidence            11                              12344444221             225677999999999999999998


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      ..+.
T Consensus       163 ~~~~  166 (167)
T d1xtqa1         163 LEAE  166 (167)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8775

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.82  E-value=1.8e-20  Score=135.71  Aligned_cols=113  Identities=23%  Similarity=0.381  Sum_probs=91.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++..|..|+++++++|+|+|+          ++..++.++..++..+.......++|++|++||+|+..+.
T Consensus        64 i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~----------~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~  133 (176)
T d1fzqa_          64 VWDIGGQRKIRPYWRSYFENTDILIYVIDS----------ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA  133 (176)
T ss_dssp             EEECSSCGGGHHHHHHHHTTCSEEEEEEET----------TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred             EeeccccccchhHHHHHhhccceeEEeecc----------ccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc
Confidence            599999999999999999999999999999          8999999999999998887777789999999999997532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..   ..+.+.+.                                  ...   ...+.+.+++|||++|+||+++|++|.
T Consensus       134 ~~---~~~~~~~~----------------------------------~~~---~~~~~~~~~~~SA~tg~gv~e~~~~l~  173 (176)
T d1fzqa_         134 PA---SEIAEGLN----------------------------------LHT---IRDRVWQIQSCSALTGEGVQDGMNWVC  173 (176)
T ss_dssp             CH---HHHHHHTT----------------------------------GGG---CCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             cH---HHHHHHHH----------------------------------HHH---HHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11   11111110                                  011   344668889999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.|
T Consensus       174 ~~i  176 (176)
T d1fzqa_         174 KNV  176 (176)
T ss_dssp             HTC
T ss_pred             hcC
Confidence            753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.82  E-value=5.4e-21  Score=138.24  Aligned_cols=112  Identities=21%  Similarity=0.166  Sum_probs=89.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++.++..++++++++|+|+|+          ++..++.....|+..+.+.....++|++|||||+|+.+.+
T Consensus        56 i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~  125 (168)
T d1u8za_          56 ILDTAGQEDYAAIRDNYFRSGEGFLCVFSI----------TEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR  125 (168)
T ss_dssp             EEECCC---CHHHHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGC
T ss_pred             ccccccccchhhhhhhcccccceeEEEeec----------cchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccc
Confidence            699999999999999999999999999999          8999999999999998876556789999999999986542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.++...             ..+.+++|||++|.||+++|.++.
T Consensus       126 ~v------------------------------~~~~~~~~~~~-------------~~~~~~e~Sak~g~gv~e~f~~l~  162 (168)
T d1u8za_         126 QV------------------------------SVEEAKNRADQ-------------WNVNYVETSAKTRANVDKVFFDLM  162 (168)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             cc------------------------------cHHHHHHHHHH-------------cCCeEEEEcCCCCcCHHHHHHHHH
Confidence            11                              12344444322             225678999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.|+.
T Consensus       163 ~~i~~  167 (168)
T d1u8za_         163 REIRA  167 (168)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            88754

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.82  E-value=2.3e-20  Score=133.96  Aligned_cols=115  Identities=23%  Similarity=0.347  Sum_probs=92.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|+++++..|..++++++++++|+|+          ++..++.++..++...+......+.|++|++||+|+....
T Consensus        50 ~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~----------~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  119 (165)
T d1ksha_          50 IWDVGGQKSLRSYWRNYFESTDGLIWVVDS----------ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL  119 (165)
T ss_dssp             EEEECCSHHHHTTGGGGCTTCSEEEEEEET----------TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             eeecCcchhhhhHHHhhhhhhhcceeeeec----------ccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc
Confidence            699999999999999999999999999999          8999999999999998887777889999999999986432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..   ......                                  ..+..   ...+.+.+++|||++|+||.++|++|.
T Consensus       120 ~~---~~~~~~----------------------------------~~~~~---~~~~~~~~~~~Sa~~g~gv~e~~~~l~  159 (165)
T d1ksha_         120 SC---NAIQEA----------------------------------LELDS---IRSHHWRIQGCSAVTGEDLLPGIDWLL  159 (165)
T ss_dssp             CH---HHHHHH----------------------------------TTGGG---CCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             CH---HHHHHH----------------------------------HHhhh---hhcCCCEEEEEECCCCCCHHHHHHHHH
Confidence            11   011100                                  00111   234567889999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.|.+
T Consensus       160 ~~i~~  164 (165)
T d1ksha_         160 DDISS  164 (165)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            98864

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.2e-21  Score=137.78  Aligned_cols=110  Identities=17%  Similarity=0.184  Sum_probs=88.2

Q ss_pred             eeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHH
Q psy12099          2 FDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKV   81 (174)
Q Consensus         2 wD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~   81 (174)
                      ||++||+++  ++..|+++++++|+|||+          ++..++.++..|+..+.......++|++|+|||+|+..++.
T Consensus        61 ~~~~g~e~~--~~~~~~~~~~~~ilvfd~----------t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~  128 (172)
T d2g3ya1          61 WENKGENEW--LHDHCMQVGDAYLIVYSI----------TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCRE  128 (172)
T ss_dssp             TTTTHHHHH--HHHCCCCCCSEEEEEEET----------TCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC
T ss_pred             ccccccccc--cccccccccceeeeeecc----------cccchhhhhhhhhhhhhhccccCCceEEEEecccccccccc
Confidence            556788766  688999999999999999          89999999999999988776667899999999999876431


Q ss_pred             hccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHHH
Q psy12099         82 KAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRD  161 (174)
Q Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~~  161 (174)
                      .                              ..++|..+...             ..+.+++|||++|.||+++|..+.+
T Consensus       129 v------------------------------~~~~~~~~a~~-------------~~~~~~e~Sak~g~~i~~~f~~l~~  165 (172)
T d2g3ya1         129 V------------------------------SVSEGRACAVV-------------FDCKFIETSAAVQHNVKELFEGIVR  165 (172)
T ss_dssp             S------------------------------CHHHHHHHHHH-------------HTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             c------------------------------cHHHHHHHHHH-------------cCCeEEEEeCCCCcCHHHHHHHHHH
Confidence            1                              12334444221             2366789999999999999999999


Q ss_pred             HHHHh
Q psy12099        162 IIQRM  166 (174)
Q Consensus       162 ~i~~~  166 (174)
                      .|..+
T Consensus       166 ~i~~r  170 (172)
T d2g3ya1         166 QVRLR  170 (172)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            88654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.4e-21  Score=137.85  Aligned_cols=111  Identities=17%  Similarity=0.168  Sum_probs=83.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++.+|..||++++++|+|||+          +++++|+....|++.+... .....|++|+|||+|+..++
T Consensus        56 ~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~  124 (167)
T d1z08a1          56 IWDTAGQERFHALGPIYYRDSNGAILVYDI----------TDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKER  124 (167)
T ss_dssp             EEECCCC-------CCSSTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGC
T ss_pred             eeccCCcceecccchhhccCCceeEEEEeC----------CchhHHHhhhhhhhhcccc-cccccceeeecccccccccc
Confidence            699999999999999999999999999999          8999999999999876544 34578999999999997653


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              +.+++.++..             ...+.+++|||+++.||+++|.++.
T Consensus       125 ~v------------------------------~~~e~~~~a~-------------~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1         125 HV------------------------------SIQEAESYAE-------------SVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------HTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             cc------------------------------chHHHHHHHH-------------HcCCeEEEEecCCCcCHHHHHHHHH
Confidence            21                              1234444422             1235678999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.|++
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.82  E-value=2.6e-20  Score=133.84  Aligned_cols=112  Identities=20%  Similarity=0.290  Sum_probs=90.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++||+.++..|.+|+.+++++++|+|+          ++..++.+...++..+++....+++|++|++||+|+....
T Consensus        51 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~  120 (164)
T d1zd9a1          51 LWDIGGQPRFRSMWERYCRGVSAIVYMVDA----------ADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL  120 (164)
T ss_dssp             EEEECCSHHHHTTHHHHHTTCSEEEEEEET----------TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC
T ss_pred             Eeeccccccccccccccccccchhhccccc----------ccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh
Confidence            699999999999999999999999999999          7899999999999999998888899999999999986431


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      -.   ..+.+..                                  ....   ...+.+.++++||++|.||.++|++|.
T Consensus       121 ~~---~~i~~~~----------------------------------~~~~---~~~~~~~~~e~Sa~~g~gv~e~~~~l~  160 (164)
T d1zd9a1         121 DE---KELIEKM----------------------------------NLSA---IQDREICCYSISCKEKDNIDITLQWLI  160 (164)
T ss_dssp             CH---HHHHHHT----------------------------------TGGG---CCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             hH---HHHHHHH----------------------------------HHHH---HHhCCCEEEEEeCcCCcCHHHHHHHHH
Confidence            11   0111100                                  0011   334567889999999999999999987


Q ss_pred             HH
Q psy12099        161 DI  162 (174)
Q Consensus       161 ~~  162 (174)
                      +.
T Consensus       161 ~~  162 (164)
T d1zd9a1         161 QH  162 (164)
T ss_dssp             HT
T ss_pred             Hc
Confidence            64

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=4.9e-21  Score=137.67  Aligned_cols=110  Identities=15%  Similarity=0.130  Sum_probs=90.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++++..++..++++++++++|+|+          ++..+++....|+..+...  ..++|++|||||+|+.+++
T Consensus        55 i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~i~~~--~~~~~iilVgnK~Dl~~~~  122 (164)
T d1z2aa1          55 LWDTAGQEEFDAITKAYYRGAQACVLVFST----------TDRESFEAISSWREKVVAE--VGDIPTALVQNKIDLLDDS  122 (164)
T ss_dssp             EECCTTGGGTTCCCHHHHTTCCEEEEEEET----------TCHHHHHTHHHHHHHHHHH--HCSCCEEEEEECGGGGGGC
T ss_pred             eeccCCccchhhhhhhhhccCceEEEEEec----------cchhhhhhccccccccccc--CCCceEEEeeccCCcccce
Confidence            699999999999999999999999999999          8999999999999888654  3478999999999997643


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.+|...             ..+.+++|||++|.||+++|+.+.
T Consensus       123 ~v------------------------------~~~~~~~~~~~-------------~~~~~~e~Sak~g~~v~e~f~~l~  159 (164)
T d1z2aa1         123 CI------------------------------KNEEAEGLAKR-------------LKLRFYRTSVKEDLNVSEVFKYLA  159 (164)
T ss_dssp             SS------------------------------CHHHHHHHHHH-------------HTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             ee------------------------------eehhhHHHHHH-------------cCCEEEEeccCCCcCHHHHHHHHH
Confidence            11                              12344444321             235678999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.+++
T Consensus       160 ~~~lq  164 (164)
T d1z2aa1         160 EKHLQ  164 (164)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            88863

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.5e-20  Score=135.46  Aligned_cols=110  Identities=16%  Similarity=0.165  Sum_probs=90.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++..+..|+++++++|+|+|+          +++.++.....|+..+.......++|++|||||+|+...+
T Consensus        55 ~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~  124 (167)
T d1kaoa_          55 ILDTAGTEQFASMRDLYIKNGQGFILVYSL----------VNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESER  124 (167)
T ss_dssp             EEECCCTTCCHHHHHHHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGC
T ss_pred             cccCCCccccccchHHHhhcccceeeeeee----------cchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcc
Confidence            599999999999999999999999999999          8999999999999998766556789999999999997643


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+...             ..+.+++|||++|.||+++|..+.
T Consensus       125 ~~------------------------------~~~~~~~~~~~-------------~~~~~~e~Sak~g~~i~e~f~~i~  161 (167)
T d1kaoa_         125 EV------------------------------SSSEGRALAEE-------------WGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             cc------------------------------hHHHHHHHHHH-------------cCCeEEEECCCCCcCHHHHHHHHH
Confidence            21                              12334444221             225678999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.|
T Consensus       162 ~~i  164 (167)
T d1kaoa_         162 RQM  164 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            766

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.9e-20  Score=135.81  Aligned_cols=114  Identities=17%  Similarity=0.173  Sum_probs=93.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++.+|..++++++++|+|+|+          +++.+++....|+..+.+.. ..+.|++|++||+|+...+
T Consensus        56 i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~  124 (173)
T d2a5ja1          56 IWDTAGQESFRSITRSYYRGAAGALLVYDI----------TRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRR  124 (173)
T ss_dssp             EECCTTGGGTSCCCHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGC
T ss_pred             eecccCccchhhHHHHHhhccCEEEEEEee----------cChHHHHhHHHHHHHHHHhC-CCCCeEEEEecCCchhhhh
Confidence            699999999999999999999999999999          89999999999999886643 3678999999999986543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+...             ..+.+++|||++|.||+++|.++.
T Consensus       125 ~~------------------------------~~~~~~~~a~~-------------~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1         125 DV------------------------------KREEGEAFARE-------------HGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             hh------------------------------HHHHHHHHHHH-------------cCCEEEEecCCCCCCHHHHHHHHH
Confidence            22                              12234444221             235678999999999999999999


Q ss_pred             HHHHHhhh
Q psy12099        161 DIIQRMHL  168 (174)
Q Consensus       161 ~~i~~~~~  168 (174)
                      +.|+++..
T Consensus       162 ~~i~~~~~  169 (173)
T d2a5ja1         162 KEIYRKIQ  169 (173)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987643

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.2e-20  Score=136.32  Aligned_cols=110  Identities=16%  Similarity=0.152  Sum_probs=89.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++||+.++.+|..||++++++|+|+|+          ++..++.....|+..+.+. ..+++|++|+|||+|+..++
T Consensus        59 ~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~  127 (170)
T d1r2qa_          59 IWDTAGQERYHSLAPMYYRGAQAAIVVYDI----------TNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKR  127 (170)
T ss_dssp             EEEECCSGGGGGGHHHHHTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGC
T ss_pred             eccCCCchhhhhhHHHHhhCcceEEEEecc----------chhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccc
Confidence            599999999999999999999999999999          8999999999999887654 34679999999999997653


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              +.+.+..+..             ...+.+++|||++|.||+++|.++.
T Consensus       128 ~v------------------------------~~e~~~~~~~-------------~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_         128 AV------------------------------DFQEAQSYAD-------------DNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------HTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             cc------------------------------cHHHHHHHHH-------------hcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            21                              1233444422             1236788999999999999999998


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.|.
T Consensus       165 ~~i~  168 (170)
T d1r2qa_         165 KKLP  168 (170)
T ss_dssp             HTSC
T ss_pred             HHHh
Confidence            7664

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.6e-21  Score=137.41  Aligned_cols=109  Identities=16%  Similarity=0.117  Sum_probs=90.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++.+|..|+++++++|+|||+          +++++++.+..|+..+.+..  .++|++|+|||+|+..+.
T Consensus        56 i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~  123 (170)
T d1i2ma_          56 VWDTAGQEKFGGLRDGYYIQAQCAIIMFDV----------TSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRK  123 (170)
T ss_dssp             EEECTTHHHHSSCGGGGTTTCCEEEEEEET----------TSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSC
T ss_pred             ccccccccccceecchhcccccchhhcccc----------ccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhh
Confidence            699999999999999999999999999999          89999999999999887653  579999999999986543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  . .                             +..+             +....+.+++|||+++.||+++|.++.
T Consensus       124 ~~--~-~-----------------------------~~~~-------------~~~~~~~~~e~Sak~~~~v~e~f~~l~  158 (170)
T d1i2ma_         124 VK--A-K-----------------------------SIVF-------------HRKKNLQYYDISAKSNYNFEKPFLWLA  158 (170)
T ss_dssp             CT--T-T-----------------------------SHHH-------------HSSCSSEEEEEBTTTTBTTTHHHHHHH
T ss_pred             hh--h-H-----------------------------HHHH-------------HHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            22  1 0                             1111             123456788999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.|+++
T Consensus       159 ~~l~~~  164 (170)
T d1i2ma_         159 RKLIGD  164 (170)
T ss_dssp             HHHHTC
T ss_pred             HHHccC
Confidence            998753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.3e-20  Score=133.97  Aligned_cols=109  Identities=17%  Similarity=0.201  Sum_probs=88.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++||+.++..|..|+++++++|+|+|+          ++..++.....|+..+.+.. ..++|++|+|||+|+.+..
T Consensus        53 i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~  121 (164)
T d1yzqa1          53 LWDTAGQERFRSLIPSYIRDSAAAVVVYDI----------TNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKR  121 (164)
T ss_dssp             EEEECCSGGGGGGHHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGC
T ss_pred             ecccCCcchhccchHHHhhccceEEEeecc----------ccccchhhhHhhHHHHHHhc-CCCceEEEEecccchhhhh
Confidence            699999999999999999999999999999          89999999999999876543 3579999999999996543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..             ...+.+++|||++|.||+++|++|+
T Consensus       122 ~~------------------------------~~~~~~~~~~-------------~~~~~~~e~SAk~g~~v~e~f~~i~  158 (164)
T d1yzqa1         122 QV------------------------------SIEEGERKAK-------------ELNVMFIETSAKAGYNVKQLFRRVA  158 (164)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------HTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             hh------------------------------hHHHHHHHHH-------------HcCCEEEEecCCCCcCHHHHHHHHH
Confidence            11                              1233444422             1235678999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.|
T Consensus       159 ~~l  161 (164)
T d1yzqa1         159 AAL  161 (164)
T ss_dssp             HHS
T ss_pred             Hhh
Confidence            764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=3.4e-20  Score=133.56  Aligned_cols=109  Identities=18%  Similarity=0.131  Sum_probs=88.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||++|+++++.+|..|+++++++|+|||+          ++++++.....|+..+... ...+.|++|||||+|+..++
T Consensus        57 i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~  125 (167)
T d1z0ja1          57 IWDTAGLERFRALAPMYYRGSAAAIIVYDI----------TKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVR  125 (167)
T ss_dssp             EEEECCSGGGGGGTHHHHTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGC
T ss_pred             eeecCCchhhhHHHHHHHhhccceEEEeee----------chhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhcccc
Confidence            699999999999999999999999999999          8999999998888776544 34688999999999996543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.+|..             ...+.+++|||++|.||+++|.+|.
T Consensus       126 ~v------------------------------~~~~~~~~~~-------------~~~~~~~e~SAk~~~nV~e~f~~l~  162 (167)
T d1z0ja1         126 EV------------------------------MERDAKDYAD-------------SIHAIFVETSAKNAININELFIEIS  162 (167)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------HTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             ch------------------------------hHHHHHHHHH-------------HcCCEEEEEecCCCCCHHHHHHHHH
Confidence            21                              1234444432             1235678999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.|
T Consensus       163 ~~i  165 (167)
T d1z0ja1         163 RRI  165 (167)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            765

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5e-20  Score=133.42  Aligned_cols=112  Identities=20%  Similarity=0.237  Sum_probs=91.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++||+++..+|..|+++++++|+|+|+          ++..++.....|+..+.... ..++|++|++||+|+..+.
T Consensus        58 i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~  126 (174)
T d2bmea1          58 IWDTAGQERFRSVTRSYYRGAAGALLVYDI----------TSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADR  126 (174)
T ss_dssp             EEEECCSGGGHHHHHTTSTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGC
T ss_pred             EEECCCchhhhhhHHHHhhhCCEEEEEEec----------ccchhHHHHhhhhccccccc-CCceEEEEEEecccccchh
Confidence            699999999999999999999999999999          89999999999998876543 4689999999999986542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+.+.++..             ...+.+++|||+++.||+++|.++.
T Consensus       127 ~~------------------------------~~~~~~~~~~-------------~~~~~~~e~Sak~~~gi~e~f~~l~  163 (174)
T d2bmea1         127 EV------------------------------TFLEASRFAQ-------------ENELMFLETSALTGENVEEAFVQCA  163 (174)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------HTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             ch------------------------------hhhHHHHHHH-------------hCCCEEEEeeCCCCcCHHHHHHHHH
Confidence            11                              1122333321             1336788999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.|+++
T Consensus       164 ~~i~~~  169 (174)
T d2bmea1         164 RKILNK  169 (174)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998865

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.6e-21  Score=138.55  Aligned_cols=113  Identities=19%  Similarity=0.198  Sum_probs=88.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC-CCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR-WLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~-~~~~~~iilv~NK~Dl~~~   79 (174)
                      +||++|++.++..+..|+++++++|+|||+          ++++++.....|+..+.+.. ...++|++|||||+|+..+
T Consensus        54 ~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~  123 (171)
T d2erxa1          54 ITDTTGSHQFPAMQRLSISKGHAFILVYSI----------TSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS  123 (171)
T ss_dssp             EEECCSCSSCHHHHHHHHHHCSEEEEEEET----------TCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred             cccccccccccccccccccceeEEEEEeec----------ccccchhcccchhhhhhhhhccCCCCcEEEEeeccccccc
Confidence            599999999999999999999999999999          89999999999998876532 3467899999999998654


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      +..                              ..+++.+|...             ..+.+++|||++|.||+++|..+
T Consensus       124 ~~v------------------------------~~~e~~~~~~~-------------~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1         124 REV------------------------------QSSEAEALART-------------WKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             CCS------------------------------CHHHHHHHHHH-------------HTCEEEECBTTTTBSHHHHHHHH
T ss_pred             ccc------------------------------cHHHHHHHHHH-------------cCCeEEEEcCCCCcCHHHHHHHH
Confidence            311                              12344444321             23678899999999999999999


Q ss_pred             HHHHHHh
Q psy12099        160 RDIIQRM  166 (174)
Q Consensus       160 ~~~i~~~  166 (174)
                      .+.+.++
T Consensus       161 ~~~~~~~  167 (171)
T d2erxa1         161 LNLEKRR  167 (171)
T ss_dssp             HHTCCSS
T ss_pred             HHHHHHh
Confidence            8766543

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.4e-20  Score=134.73  Aligned_cols=114  Identities=18%  Similarity=0.193  Sum_probs=89.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||++|++.+. ....|+++++++|+|+|+          +++.++.....|+..........+.|++|+|||+|+..++
T Consensus        54 i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r  122 (168)
T d2atva1          54 ILDTAGQEDTI-QREGHMRWGEGFVLVYDI----------TDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR  122 (168)
T ss_dssp             EEECCCCCCCH-HHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGC
T ss_pred             Eeecccccccc-cchhhhcccccceeeccc----------CCccchhhhhhhcccccccccccCcceeeeccchhhhhhc
Confidence            69999999885 456799999999999999          8999999998887666555455689999999999996543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccch-hHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTE-NIRRVFNDC  159 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~-~i~~~f~~~  159 (174)
                      ..                              +.++|.++...             ..+.+++|||++|. ||+++|..+
T Consensus       123 ~V------------------------------~~~e~~~~a~~-------------~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1         123 QV------------------------------STEEGEKLATE-------------LACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cC------------------------------cHHHHHHHHHH-------------hCCeEEEEccccCCcCHHHHHHHH
Confidence            11                              13445555321             23568899999998 799999999


Q ss_pred             HHHHHHhhh
Q psy12099        160 RDIIQRMHL  168 (174)
Q Consensus       160 ~~~i~~~~~  168 (174)
                      .+.|.++++
T Consensus       160 ~~~i~~~rl  168 (168)
T d2atva1         160 CREVRRRRM  168 (168)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            999987753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.8e-20  Score=133.20  Aligned_cols=109  Identities=19%  Similarity=0.162  Sum_probs=89.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++||+.++.+|..++++++++|+|+|+          ++..++.....|+..+.+. .....|++|+|||+|+....
T Consensus        57 i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~  125 (166)
T d1z0fa1          57 IWDTAGQERFRAVTRSYYRGAAGALMVYDI----------TRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQR  125 (166)
T ss_dssp             EEECTTGGGTCHHHHHHHHTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGC
T ss_pred             EeccCCchhHHHHHHHHhcCCcEEEEEecc----------CchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhc
Confidence            699999999999999999999999999999          8999999999998887543 45678999999999986542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.++...             ..+.+++|||++|.||+++|.++.
T Consensus       126 ~~------------------------------~~~~~~~~~~~-------------~~~~~~e~Saktg~~v~e~f~~i~  162 (166)
T d1z0fa1         126 DV------------------------------TYEEAKQFAEE-------------NGLLFLEASAKTGENVEDAFLEAA  162 (166)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------TTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             cc------------------------------HHHHHHHHHHH-------------cCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11                              12345554321             235788999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.|
T Consensus       163 ~~i  165 (166)
T d1z0fa1         163 KKI  165 (166)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=6.2e-20  Score=132.86  Aligned_cols=116  Identities=12%  Similarity=0.098  Sum_probs=81.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcC---CCCCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNN---RWLRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~---~~~~~~~iilv~NK~Dl~   77 (174)
                      +|||+|++++...|..|++.++++|+|+|+          ++..+++.+..|+.++...   ....++|++|++||+|+.
T Consensus        56 ~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~  125 (175)
T d1ky3a_          56 VWDTAGQERFQSLGVAFYRGADCCVLVYDV----------TNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE  125 (175)
T ss_dssp             EECCC----------CCSTTCCEEEEEEET----------TCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred             eeccCCchhhhhHHHHHhhccceEEEEeec----------ccccccchhhhcchhhhhhhhhcccccCcEEEEecccchh
Confidence            599999999999999999999999999999          8999999999998887543   234578999999999997


Q ss_pred             hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099         78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN  157 (174)
Q Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~  157 (174)
                      .++..   .                          ..+++.+|..+            ...+.+++|||++|.||+++|.
T Consensus       126 ~~~~~---v--------------------------~~~~~~~~~~~------------~~~~~~~e~SA~~g~gv~e~f~  164 (175)
T d1ky3a_         126 ESKKI---V--------------------------SEKSAQELAKS------------LGDIPLFLTSAKNAINVDTAFE  164 (175)
T ss_dssp             GGGCC---S--------------------------CHHHHHHHHHH------------TTSCCEEEEBTTTTBSHHHHHH
T ss_pred             hhhcc---h--------------------------hHHHHHHHHHH------------cCCCeEEEEeCCCCcCHHHHHH
Confidence            64311   0                          11223333211            1225578999999999999999


Q ss_pred             HHHHHHHHhh
Q psy12099        158 DCRDIIQRMH  167 (174)
Q Consensus       158 ~~~~~i~~~~  167 (174)
                      ++.+.+++++
T Consensus       165 ~l~~~~l~~~  174 (175)
T d1ky3a_         165 EIARSALQQN  174 (175)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcc
Confidence            9999998775

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.2e-19  Score=133.48  Aligned_cols=125  Identities=13%  Similarity=0.133  Sum_probs=94.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++||++++.+|..||++++++|+|||+          +++++|+.+..|+...+... ..++|+++++||+|+....
T Consensus        55 i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~  123 (191)
T d2ngra_          55 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSV----------VSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDP  123 (191)
T ss_dssp             EEEECCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCH
T ss_pred             ccccccchhhhhhhhhcccccceeeccccc----------chHHHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccc
Confidence            699999999999999999999999999999          89999999988887776653 3579999999999998654


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..     ..+....-.             ..-..++|.+|..+            ...+.+++|||+++.||+++|+.+.
T Consensus       124 ~~-----~~~~~~~~~-------------~~v~~~~~~~~~~~------------~~~~~~~e~SAk~~~~V~e~f~~l~  173 (191)
T d2ngra_         124 ST-----IEKLAKNKQ-------------KPITPETAEKLARD------------LKAVKYVECSALTQKGLKNVFDEAI  173 (191)
T ss_dssp             HH-----HHHHHTTTC-------------CCCCHHHHHHHHHH------------TTCSCEEECCTTTCTTHHHHHHHHH
T ss_pred             hh-----hhhhhhccc-------------ccccHHHHHHHHHH------------cCCCeEEEEeCCCCcCHHHHHHHHH
Confidence            32     111111000             01134556665432            1235678999999999999999998


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      ..+++.
T Consensus       174 ~~~~~~  179 (191)
T d2ngra_         174 LAALEP  179 (191)
T ss_dssp             HHHTSC
T ss_pred             HHHhcC
Confidence            887643

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=2.9e-19  Score=130.41  Aligned_cols=125  Identities=14%  Similarity=0.106  Sum_probs=92.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||++||+.++..+..++++++++|+|||+          ++.++|+....||...+... ..++|++|||||+|+....
T Consensus        54 i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~Sf~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~~  122 (179)
T d1m7ba_          54 LWDTSGSPYYDNVRPLSYPDSDAVLICFDI----------SRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDV  122 (179)
T ss_dssp             EEEECCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCH
T ss_pred             cccccccccccccccchhhhhhhhheeeec----------ccCCCHHHHHHHHHHHHhcc-CCcceEEEEEecccccccc
Confidence            699999999999999999999999999999          89999999998888876543 3589999999999987543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchh-HHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTEN-IRRVFNDC  159 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~-i~~~f~~~  159 (174)
                      ..  ...+    .+...            ..-+.+++.++..+.            ....+++|||+++.| |+++|+.+
T Consensus       123 ~~--~~~~----~~~~~------------~~V~~~e~~~~a~~~------------~~~~y~E~SAk~~~n~i~~~F~~~  172 (179)
T d1m7ba_         123 ST--LVEL----SNHRQ------------TPVSYDQGANMAKQI------------GAATYIECSALQSENSVRDIFHVA  172 (179)
T ss_dssp             HH--HHHH----HTTTC------------CCCCHHHHHHHHHHH------------TCSEEEECBTTTBHHHHHHHHHHH
T ss_pred             hh--hHHH----hhhhc------------CcchHHHHHHHHHHh------------CCCeEEEEeCCCCCcCHHHHHHHH
Confidence            22  1111    11100            001244455543211            225678999999986 99999999


Q ss_pred             HHHHHHh
Q psy12099        160 RDIIQRM  166 (174)
Q Consensus       160 ~~~i~~~  166 (174)
                      ...++++
T Consensus       173 ~~~~l~k  179 (179)
T d1m7ba_         173 TLACVNK  179 (179)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhcC
Confidence            9988763

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.1e-19  Score=134.05  Aligned_cols=112  Identities=22%  Similarity=0.159  Sum_probs=89.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||++++.+|..||++++++|+|+|+          ++.+++.....++..+.+. ...+.|++|++||+|+.+..
T Consensus        59 i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~----------t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~  127 (194)
T d2bcgy1          59 IWDTAGQERFRTITSSYYRGSHGIIIVYDV----------TDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKR  127 (194)
T ss_dssp             EECCTTTTTTTCCCGGGGTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTC
T ss_pred             EEECCCchhhHHHHHHHhccCCEEEEEEeC----------cchhhhhhHhhhhhhhhhc-ccCCceEEEEEecccccccc
Confidence            699999999999999999999999999999          8999999998888887543 45788999999999986542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..             ...+.++++||++|.||+++|+.+.
T Consensus       128 ~~------------------------------~~~~~~~~~~-------------~~~~~~~e~SAk~g~gi~e~f~~l~  164 (194)
T d2bcgy1         128 VV------------------------------EYDVAKEFAD-------------ANKMPFLETSALDSTNVEDAFLTMA  164 (194)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------HTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             ch------------------------------hHHHHhhhhh-------------ccCcceEEEecCcCccHHHHHHHHH
Confidence            11                              1122222211             1235678999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.|.+.
T Consensus       165 ~~i~~~  170 (194)
T d2bcgy1         165 RQIKES  170 (194)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.3e-19  Score=131.03  Aligned_cols=123  Identities=12%  Similarity=0.123  Sum_probs=91.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++||+.++.++..||++++++|+|||+          ++..+|+....|+...++.. ..++|++||+||+|+..++
T Consensus        57 ~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~  125 (183)
T d1mh1a_          57 LWDTAGQEDYDRLRPLSYPQTDVSLICFSL----------VSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDK  125 (183)
T ss_dssp             EECCCCSGGGTTTGGGGCTTCSEEEEEEET----------TCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCH
T ss_pred             eecccccccchhhhhhcccccceeeeeecc----------chHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhh
Confidence            699999999999999999999999999999          89999999888777766553 4578999999999997654


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  ......   ...             ......++..+..+            ...+.+++|||+++.||+++|..+.
T Consensus       126 ~~--~~~~~~---~~~-------------~~~~~~~~~~~a~~------------~~~~~~~E~SAk~~~~V~e~F~~l~  175 (183)
T d1mh1a_         126 DT--IEKLKE---KKL-------------TPITYPQGLAMAKE------------IGAVKYLECSALTQRGLKTVFDEAI  175 (183)
T ss_dssp             HH--HHHHHH---TTC-------------CCCCHHHHHHHHHH------------TTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred             hh--hhhhhh---ccc-------------cchhhHHHHHHHHH------------cCCceEEEcCCCCCcCHHHHHHHHH
Confidence            22  111111   000             01123344444221            1336788999999999999999999


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.|+
T Consensus       176 ~~il  179 (183)
T d1mh1a_         176 RAVL  179 (183)
T ss_dssp             HHHS
T ss_pred             HHHc
Confidence            8876

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.3e-19  Score=131.77  Aligned_cols=112  Identities=17%  Similarity=0.156  Sum_probs=92.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+|++.++.+|..|+++++++|+|+|+          ++.+++.....|+..+.+.......|+++++||.|.....
T Consensus        60 i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~  129 (177)
T d1x3sa1          60 IWDTAGQERFRTLTPSYYRGAQGVILVYDV----------TRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE  129 (177)
T ss_dssp             EEEECSSGGGCCSHHHHHTTCCEEEEEEET----------TCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC
T ss_pred             EEECCCchhhHHHHHHHHhcCCEEEEEEEC----------CCccccccchhhhhhhcccccccceeeEEEeecccccccc
Confidence            699999999999999999999999999999          8999999999999998776666778999999999975432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      +.                               .+++.+|..             ...+.+++|||++|.||.++|+++.
T Consensus       130 v~-------------------------------~~~~~~~~~-------------~~~~~~~e~Sa~tg~gv~e~f~~l~  165 (177)
T d1x3sa1         130 VD-------------------------------RNEGLKFAR-------------KHSMLFIEASAKTCDGVQCAFEELV  165 (177)
T ss_dssp             SC-------------------------------HHHHHHHHH-------------HTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             cc-------------------------------HHHHHHHHH-------------HCCCEEEEEeCCCCCCHHHHHHHHH
Confidence            21                               223444432             1336788999999999999999998


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.+++.
T Consensus       166 ~~l~~~  171 (177)
T d1x3sa1         166 EKIIQT  171 (177)
T ss_dssp             HHHHTS
T ss_pred             HHHccC
Confidence            887743

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=8.2e-20  Score=132.02  Aligned_cols=112  Identities=16%  Similarity=0.168  Sum_probs=88.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.+...+..++++++++|+|+|+          +++.++..+..|+..+.......+.|++|+|||+|+..++
T Consensus        57 ~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~  126 (171)
T d2erya1          57 ILDTAGQEEFGAMREQYMRTGEGFLLVFSV----------TDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQR  126 (171)
T ss_dssp             EEECC----CCHHHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSC
T ss_pred             cccccccccccccccccccccceEEEeecc----------ccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhc
Confidence            699999999999999999999999999999          8999999999999988877666789999999999986542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.+|..             ...+.+++|||+++.||.++|..+.
T Consensus       127 ~v------------------------------~~~~~~~~~~-------------~~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1         127 QV------------------------------TQEEGQQLAR-------------QLKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             SS------------------------------CHHHHHHHHH-------------HTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             cc------------------------------hHHHHHHHHH-------------HcCCEEEEEcCCCCcCHHHHHHHHH
Confidence            11                              1233444432             1235678999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.|.+
T Consensus       164 ~~i~k  168 (171)
T d2erya1         164 RVIRK  168 (171)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98854

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.8e-19  Score=130.71  Aligned_cols=112  Identities=21%  Similarity=0.236  Sum_probs=90.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++..|..++++++++|+|||+          ++..++.....|+..+.+.. .+++|++|||||+|+.+..
T Consensus        57 i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~----------~~~~S~~~~~~~~~~i~~~~-~~~~piilvgnK~Dl~~~~  125 (175)
T d2f9la1          57 IWDTAGQERYRRITSAYYRGAVGALLVYDI----------AKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLR  125 (175)
T ss_dssp             EEECSSGGGTTCCCHHHHTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGC
T ss_pred             ecccCCcHHHHHHHHHHhhccCeEEEEEEC----------CCcccchhHHHHHHHHHHhc-CCCCcEEEEEeeecccccc
Confidence            699999999999999999999999999999          89999999999998886653 3678999999999997643


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..    .                          .+.+..+..             .....+++|||++|.||+++|+++.
T Consensus       126 ~~----~--------------------------~~~~~~~~~-------------~~~~~~~e~Sa~~g~~i~e~f~~l~  162 (175)
T d2f9la1         126 AV----P--------------------------TDEARAFAE-------------KNNLSFIETSALDSTNVEEAFKNIL  162 (175)
T ss_dssp             CS----C--------------------------HHHHHHHHH-------------HTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             cc----h--------------------------HHHHHHhhc-------------ccCceEEEEecCCCcCHHHHHHHHH
Confidence            21    0                          111222211             1225678999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.|.+.
T Consensus       163 ~~i~~~  168 (175)
T d2f9la1         163 TEIYRI  168 (175)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=7.3e-20  Score=132.16  Aligned_cols=110  Identities=16%  Similarity=0.162  Sum_probs=82.0

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||++++.+|..|+++++++|+|+|+          ++..++.....|+..+.... ..+.|++|++||+|+..+.
T Consensus        60 i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~----------~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~~~~~  128 (170)
T d2g6ba1          60 MWDTAGQERFRSVTHAYYRDAHALLLLYDV----------TNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHER  128 (170)
T ss_dssp             EEECCCC--------CCGGGCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCC
T ss_pred             EEECCCchhhHHHHHHhhcCCceeEEEecC----------Ccccchhhhhhhhhhhhhcc-CCCceEEEEEeeechhhcc
Confidence            699999999999999999999999999999          89999999999998876553 3578999999999986542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++.++...             ..+.++++||++|.||+++|.++.
T Consensus       129 ~v------------------------------~~~~~~~~~~~-------------~~~~~~e~Sak~g~gi~e~f~~l~  165 (170)
T d2g6ba1         129 VV------------------------------KREDGEKLAKE-------------YGLPFMETSAKTGLNVDLAFTAIA  165 (170)
T ss_dssp             CS------------------------------CHHHHHHHHHH-------------HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             cc------------------------------cHHHHHHHHHH-------------cCCEEEEEeCCCCcCHHHHHHHHH
Confidence            21                              12334444321             236788999999999999999999


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.|+
T Consensus       166 ~~i~  169 (170)
T d2g6ba1         166 KELK  169 (170)
T ss_dssp             HHHH
T ss_pred             HHcC
Confidence            8875

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=9.6e-20  Score=131.98  Aligned_cols=113  Identities=14%  Similarity=0.097  Sum_probs=76.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +|||+||+.++.+|..|+++++++|+|+|+          +++.++.....|+..+.+. ...+.|+++++||.|+...+
T Consensus        59 i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~D~~~~~  127 (173)
T d2fu5c1          59 IWDTAGQERFRTITTAYYRGAMGIMLVYDI----------TNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKR  127 (173)
T ss_dssp             EEEC---------CCTTTTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCC
T ss_pred             EEECCCchhhHHHHHHhccCCCEEEEEEEC----------CChhhHHHHHHHHHHhhhh-ccCCceEEEEEecccchhhc
Confidence            699999999999999999999999999999          8999999999998887544 45679999999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                              ..+++..+..             ...+.+++|||++|.||.++|.++.
T Consensus       128 ~~------------------------------~~~~~~~~~~-------------~~~~~~~e~Sa~~g~gv~e~f~~l~  164 (173)
T d2fu5c1         128 QV------------------------------SKERGEKLAL-------------DYGIKFMETSAKANINVENAFFTLA  164 (173)
T ss_dssp             CS------------------------------CHHHHHHHHH-------------HHTCEEEECCC---CCHHHHHHHHH
T ss_pred             cc------------------------------HHHHHHHHHH-------------hcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11                              1222333322             1236788999999999999999999


Q ss_pred             HHHHHhh
Q psy12099        161 DIIQRMH  167 (174)
Q Consensus       161 ~~i~~~~  167 (174)
                      +.|..+.
T Consensus       165 ~~i~~k~  171 (173)
T d2fu5c1         165 RDIKAKM  171 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9987653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.2e-19  Score=130.46  Aligned_cols=110  Identities=18%  Similarity=0.122  Sum_probs=90.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++..+..++++++++|+|+|+          ++..+++....|+..+.+.....++|++|++||+|+..+.
T Consensus        55 ~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~  124 (166)
T d1ctqa_          55 ILDTAGQEEYSAMRDQYMRTGEGFLCVFAI----------NNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAART  124 (166)
T ss_dssp             EEEECCCGGGHHHHHHHHHHCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCC
T ss_pred             eeeccCccccccchhhhhhcccccceeecc----------cccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccccc
Confidence            599999999999999999999999999999          8999999999999998776556689999999999985432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      +.                               .+++.+|...             ..+.+++|||++|.||+++|.++.
T Consensus       125 ~~-------------------------------~~~~~~~~~~-------------~~~~~~e~Sak~g~gi~e~f~~i~  160 (166)
T d1ctqa_         125 VE-------------------------------SRQAQDLARS-------------YGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             SC-------------------------------HHHHHHHHHH-------------HTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             cc-------------------------------HHHHHHHHHH-------------hCCeEEEEcCCCCcCHHHHHHHHH
Confidence            11                               2334444321             225678999999999999999999


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.|.
T Consensus       161 ~~i~  164 (166)
T d1ctqa_         161 REIR  164 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.8e-18  Score=123.45  Aligned_cols=112  Identities=15%  Similarity=0.177  Sum_probs=88.9

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHc---CCCCCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWN---NRWLRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~---~~~~~~~~iilv~NK~Dl~   77 (174)
                      +||++|+...+..|..++..++++|+|+|+          ++..+++....|+..+.+   .....+.|++|||||+|+.
T Consensus        59 i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~  128 (174)
T d1wmsa_          59 IWDTAGQERFRSLRTPFYRGSDCCLLTFSV----------DDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS  128 (174)
T ss_dssp             EEECCCCGGGHHHHGGGGTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred             eecccCcceehhhhhhhhhccceEEEEEee----------ecccccchhhhHHHHHHHHhccccCCCceEEEeccccchh
Confidence            699999999999999999999999999999          899999998888877653   2334578999999999985


Q ss_pred             hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099         78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN  157 (174)
Q Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~  157 (174)
                      +..+.                               .+++.+|..+            ...+.+++|||+++.||+++|+
T Consensus       129 ~~~v~-------------------------------~~~~~~~~~~------------~~~~~~~e~Sak~~~gI~e~f~  165 (174)
T d1wmsa_         129 ERQVS-------------------------------TEEAQAWCRD------------NGDYPYFETSAKDATNVAAAFE  165 (174)
T ss_dssp             SCSSC-------------------------------HHHHHHHHHH------------TTCCCEEECCTTTCTTHHHHHH
T ss_pred             hccCc-------------------------------HHHHHHHHHH------------cCCCeEEEEcCCCCcCHHHHHH
Confidence            42211                               2334444321            1235678999999999999999


Q ss_pred             HHHHHHHH
Q psy12099        158 DCRDIIQR  165 (174)
Q Consensus       158 ~~~~~i~~  165 (174)
                      ++.+.|+.
T Consensus       166 ~l~~~il~  173 (174)
T d1wmsa_         166 EAVRRVLA  173 (174)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99998873

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=1.3e-18  Score=124.55  Aligned_cols=107  Identities=20%  Similarity=0.196  Sum_probs=84.1

Q ss_pred             CeeCCCCchhhh-hHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099          1 MFDVGGQRDERR-KWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus         1 iwD~~Gq~~~r~-~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      +||+.|++.+.. .|..|+++++++|+|||+          +++++++....|+..+.+.....++|++|+|||+|+.++
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~  124 (165)
T d1z06a1          55 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDM----------TNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA  124 (165)
T ss_dssp             EEECCCSHHHHTTTHHHHHTTCCEEEEEEET----------TCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred             EEeccCchhhccccceeeecCCCceEEEEEe----------ehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhc
Confidence            589999887765 588999999999999999          899999999999999887666678999999999999764


Q ss_pred             HHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccc---hhHHHHH
Q psy12099         80 KVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDT---ENIRRVF  156 (174)
Q Consensus        80 ~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~---~~i~~~f  156 (174)
                      +..                              +.+++.+|...             ..+.+++|||+++   .||+++|
T Consensus       125 ~~v------------------------------~~~~~~~~~~~-------------~~~~~~e~SAkt~~~~~~V~e~F  161 (165)
T d1z06a1         125 IQV------------------------------PTDLAQKFADT-------------HSMPLFETSAKNPNDNDHVEAIF  161 (165)
T ss_dssp             CCS------------------------------CHHHHHHHHHH-------------TTCCEEECCSSSGGGGSCHHHHH
T ss_pred             cch------------------------------hHHHHHHHHHH-------------CCCEEEEEecccCCcCcCHHHHH
Confidence            311                              12344444321             2356789999874   5999999


Q ss_pred             HHHH
Q psy12099        157 NDCR  160 (174)
Q Consensus       157 ~~~~  160 (174)
                      ++++
T Consensus       162 ~~lA  165 (165)
T d1z06a1         162 MTLA  165 (165)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            9874

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=1.7e-18  Score=124.72  Aligned_cols=112  Identities=18%  Similarity=0.163  Sum_probs=89.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |||++|++++..+|..|+++++++|+|||+          +++.++.....|+..+... .....|+++++||+|+..+.
T Consensus        56 i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~----------~~~~s~~~~~~~~~~~~~~-~~~~~~~~~v~nk~d~~~~~  124 (170)
T d1ek0a_          56 IWDTAGQERFASLAPMYYRNAQAALVVYDV----------TKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDMLQEG  124 (170)
T ss_dssp             EEEECCSGGGGGGHHHHHTTCSEEEEEEET----------TCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSS
T ss_pred             ccccCCchhHHHHHHHHHhccceEEEEEeC----------Ccccchhhhhhhhhhhccc-cccccceeeeeccccccccc
Confidence            699999999999999999999999999999          8999999999998876654 34578999999999986642


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..   ..                        -..+++.++...             ..+.+++|||++|.||+++|..|.
T Consensus       125 ~~---~~------------------------v~~~~~~~~~~~-------------~~~~~~e~Sak~g~gV~e~F~~i~  164 (170)
T d1ek0a_         125 GE---RK------------------------VAREEGEKLAEE-------------KGLLFFETSAKTGENVNDVFLGIG  164 (170)
T ss_dssp             CC---CC------------------------SCHHHHHHHHHH-------------HTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             ch---hh------------------------hhHHHHHHHHHH-------------cCCEEEEecCCCCcCHHHHHHHHH
Confidence            11   01                        023445555432             236788999999999999999987


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.|
T Consensus       165 ~~i  167 (170)
T d1ek0a_         165 EKI  167 (170)
T ss_dssp             TTS
T ss_pred             HHh
Confidence            654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=1.5e-18  Score=124.56  Aligned_cols=111  Identities=17%  Similarity=0.207  Sum_probs=88.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ||||+||++++.+|..|+++++++|+|+|+          ++..+++....|+..+... .....|+++++||.|+..+.
T Consensus        55 i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~----------~~~~s~~~~~~~~~~~~~~-~~~~~~~i~~~~k~d~~~~~  123 (166)
T d1g16a_          55 IWDTAGQERFRTITTAYYRGAMGIILVYDI----------TDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRV  123 (166)
T ss_dssp             EECCTTGGGTSCCCHHHHTTEEEEEEEEET----------TCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCC
T ss_pred             EEECCCchhhHHHHHHHHhcCCEEEEEEEC----------CCccCHHHHHhhhhhhhcc-ccCcceeeeecchhhhhhhh
Confidence            599999999999999999999999999999          8888988887777766544 34567999999999985532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..                               .+++..+...             ..+.+++|||+++.||+++|.++.
T Consensus       124 ~~-------------------------------~~~~~~~~~~-------------~~~~~~~~Sa~~~~~v~e~f~~l~  159 (166)
T d1g16a_         124 VT-------------------------------ADQGEALAKE-------------LGIPFIESSAKNDDNVNEIFFTLA  159 (166)
T ss_dssp             SC-------------------------------HHHHHHHHHH-------------HTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             hh-------------------------------HHHHHHHHHh-------------cCCeEEEECCCCCCCHHHHHHHHH
Confidence            21                               2334444221             236678999999999999999999


Q ss_pred             HHHHHh
Q psy12099        161 DIIQRM  166 (174)
Q Consensus       161 ~~i~~~  166 (174)
                      +.|.++
T Consensus       160 ~~i~~k  165 (166)
T d1g16a_         160 KLIQEK  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            988754

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=5.4e-18  Score=123.66  Aligned_cols=114  Identities=15%  Similarity=0.143  Sum_probs=89.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCC---CCCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNR---WLRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~---~~~~~~iilv~NK~Dl~   77 (174)
                      +||++|++.++..|..++..++++|+|+|.          ++..++..+..|+..+....   ...++|++|||||+|+.
T Consensus        55 ~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~----------~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~  124 (184)
T d1vg8a_          55 IWDTAGQERFQSLGVAFYRGADCCVLVFDV----------TAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE  124 (184)
T ss_dssp             EEEECSSGGGSCSCCGGGTTCSEEEEEEET----------TCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred             eeecCCcccccccccccccCccEEEEeecc----------cchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeeccc
Confidence            599999999999999999999999999999          89999999989988775542   23468999999999986


Q ss_pred             hHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHH
Q psy12099         78 AEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFN  157 (174)
Q Consensus        78 ~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~  157 (174)
                      ++++.                               .+.+..+...            ...+.+++|||+++.||.++|+
T Consensus       125 ~~~~~-------------------------------~~~~~~~~~~------------~~~~~~~e~Sak~~~gI~e~f~  161 (184)
T d1vg8a_         125 NRQVA-------------------------------TKRAQAWCYS------------KNNIPYFETSAKEAINVEQAFQ  161 (184)
T ss_dssp             CCCSC-------------------------------HHHHHHHHHH------------TTSCCEEECBTTTTBSHHHHHH
T ss_pred             ccchh-------------------------------HHHHHHHHHH------------hcCCeEEEEcCCCCcCHHHHHH
Confidence            53221                               1122222111            1236678999999999999999


Q ss_pred             HHHHHHHHhh
Q psy12099        158 DCRDIIQRMH  167 (174)
Q Consensus       158 ~~~~~i~~~~  167 (174)
                      ++.+.++++.
T Consensus       162 ~l~~~i~~~~  171 (184)
T d1vg8a_         162 TIARNALKQE  171 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcc
Confidence            9998887753

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3e-17  Score=119.27  Aligned_cols=114  Identities=18%  Similarity=0.199  Sum_probs=84.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHH--cCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIW--NNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~--~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      ||||+|++++     +||++++++|+|||+          ++..+|+....|...+.  +.....+.|++||+||.|+..
T Consensus        56 i~Dt~g~~~~-----~~~~~ad~~ilVfd~----------~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~  120 (175)
T d2bmja1          56 IREEAGAPDA-----KFSGWADAVIFVFSL----------EDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISA  120 (175)
T ss_dssp             EEECSSCCCH-----HHHHHCSEEEEEEET----------TCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCS
T ss_pred             Eeeccccccc-----ccccccceeEEEeec----------ccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcch
Confidence            6999999875     489999999999999          89999999888877763  333446789999999999743


Q ss_pred             HHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHH
Q psy12099         79 EKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFND  158 (174)
Q Consensus        79 ~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~  158 (174)
                      +...    .+                        ..+++..+..            ....+.+++|||+++.||.++|..
T Consensus       121 ~~~~----~v------------------------~~~~~~~~~~------------~~~~~~~~e~SAk~~~~v~~~F~~  160 (175)
T d2bmja1         121 SSPR----VV------------------------GDARARALCA------------DMKRCSYYETCATYGLNVDRVFQE  160 (175)
T ss_dssp             SSCC----CS------------------------CHHHHHHHHH------------TSTTEEEEEEBTTTTBTHHHHHHH
T ss_pred             hhhc----ch------------------------hHHHHHHHHH------------HhCCCeEEEeCCCCCcCHHHHHHH
Confidence            2111    10                        1223444432            123467889999999999999999


Q ss_pred             HHHHHHHhhhh
Q psy12099        159 CRDIIQRMHLR  169 (174)
Q Consensus       159 ~~~~i~~~~~~  169 (174)
                      +.+.+++..-+
T Consensus       161 l~~~i~~~~~~  171 (175)
T d2bmja1         161 VAQKVVTLRKQ  171 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhhhh
Confidence            99999876543

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.68  E-value=1.4e-16  Score=112.35  Aligned_cols=113  Identities=23%  Similarity=0.400  Sum_probs=90.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++.++..|.+|+++++++|+++|+          .+..++..+..|+..+.........|+++++||.|+....
T Consensus        48 ~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~  117 (160)
T d1r8sa_          48 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDS----------NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM  117 (160)
T ss_dssp             EEECCCCGGGHHHHHHHTTTCSEEEEEEET----------TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             EecCCCcccchhhhhhhhccceeEEEEEEe----------cChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc
Confidence            599999999999999999999999999999          8999999999999999888777889999999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..   ..+...   .                               ....   ++...+.+++|||++|+||+++|++|.
T Consensus       118 ~~---~~i~~~---~-------------------------------~~~~---~~~~~~~~~~~SAktg~gi~e~~~~l~  157 (160)
T d1r8sa_         118 NA---AEITDK---L-------------------------------GLHS---LRHRNWYIQATCATSGDGLYEGLDWLS  157 (160)
T ss_dssp             CH---HHHHHH---T-------------------------------TGGG---CSSCCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             cH---HHHHHH---H-------------------------------HHHH---HhhCCCEEEEeECCCCCCHHHHHHHHH
Confidence            11   011000   0                               0000   334557889999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.|
T Consensus       158 ~~l  160 (160)
T d1r8sa_         158 NQL  160 (160)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            753

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.63  E-value=1.2e-15  Score=109.56  Aligned_cols=113  Identities=19%  Similarity=0.363  Sum_probs=86.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||++|++..+..|..++..++++++|+|.          ++..++.....++..........+.|++|++||+|+....
T Consensus        63 ~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~----------~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~  132 (177)
T d1zj6a1          63 MWDIGGQESLRSSWNTYYTNTEFVIVVVDS----------TDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM  132 (177)
T ss_dssp             EEECCC----CGGGHHHHTTCCEEEEEEET----------TCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC
T ss_pred             Eeccccccccccchhhhhccceeeeeeccc----------ccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccC
Confidence            489999999999999999999999999999          7888898888888887777777899999999999986432


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..   ..+.+.+                                  ....   ...+.+.++++||++|+||+++|++|.
T Consensus       133 ~~---~~i~~~~----------------------------------~~~~---~~~~~~~~~~~Sa~tg~Gi~e~~~~L~  172 (177)
T d1zj6a1         133 TV---AEISQFL----------------------------------KLTS---IKDHQWHIQACCALTGEGLCQGLEWMM  172 (177)
T ss_dssp             CH---HHHHHHH----------------------------------TGGG---CCSSCEEEEECBTTTTBTHHHHHHHHH
T ss_pred             cH---HHHHHHH----------------------------------HHHh---hHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11   1111111                                  1111   345668899999999999999999999


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.|
T Consensus       173 ~~l  175 (177)
T d1zj6a1         173 SRL  175 (177)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            875

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=2.4e-13  Score=95.26  Aligned_cols=118  Identities=19%  Similarity=0.299  Sum_probs=89.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||+.|+..+...|.+++..++++++++|.          ++..++.....++....+.....+.|+++++||.|+....
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~  117 (166)
T d2qtvb1          48 TFDLGGHIQARRLWKDYFPEVNGIVFLVDA----------ADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV  117 (166)
T ss_dssp             EEECCCSGGGGGGGGGGCTTCSEEEEEEET----------TCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC
T ss_pred             EEeeccchhhhhhHhhhhhheeeeeeeccc----------cchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccC
Confidence            589999999999999999999999999999          7888888888999888888888899999999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..   ..+.+.+.....   ...                           ......+.+.+++|||++|+||+++|++|.
T Consensus       118 ~~---~~i~~~~~~~~~---~~~---------------------------~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~  164 (166)
T d2qtvb1         118 SE---AELRSALGLLNT---TGS---------------------------QRIEGQRPVEVFMCSVVMRNGYLEAFQWLS  164 (166)
T ss_dssp             CH---HHHHHHHTCSSC---CC------------------------------CCSSCCEEEEEEBTTTTBSHHHHHHHHT
T ss_pred             CH---HHHHHHhhhhhh---hHH---------------------------HhhcccCCCEEEEeeCCCCCCHHHHHHHHh
Confidence            11   112111111110   000                           000234567899999999999999999986


Q ss_pred             H
Q psy12099        161 D  161 (174)
Q Consensus       161 ~  161 (174)
                      +
T Consensus       165 ~  165 (166)
T d2qtvb1         165 Q  165 (166)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.46  E-value=2.8e-13  Score=95.58  Aligned_cols=115  Identities=17%  Similarity=0.246  Sum_probs=90.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +||.+|++.++..|..++..++++++++|+          .+..++.....++............|+++++||.|+..+.
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~  122 (169)
T d1upta_          53 VWDLGGLTSIRPYWRCYYSNTDAVIYVVDS----------CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM  122 (169)
T ss_dssp             EEEECCCGGGGGGGGGGCTTCSEEEEEEET----------TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             Eeeccccccccccchhhhhhhhhhhhhhhh----------hhcchhhhccchhhhhhhhhccccceEEEEEeeccccccc
Confidence            489999999999999999999999999999          7888888888888887777777789999999999997542


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..   ..+...   ..                     ..+             +..+.+.+++|||++|.||+++|++|.
T Consensus       123 ~~---~~i~~~---~~---------------------~~~-------------~~~~~~~~~~~SA~~g~gv~e~~~~l~  162 (169)
T d1upta_         123 TS---SEMANS---LG---------------------LPA-------------LKDRKWQIFKTSATKGTGLDEAMEWLV  162 (169)
T ss_dssp             CH---HHHHHH---HT---------------------GGG-------------CTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             cH---HHHHHH---HH---------------------HHH-------------HhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence            11   011100   00                     000             334567889999999999999999999


Q ss_pred             HHHHH
Q psy12099        161 DIIQR  165 (174)
Q Consensus       161 ~~i~~  165 (174)
                      +.|.+
T Consensus       163 ~~l~~  167 (169)
T d1upta_         163 ETLKS  167 (169)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98754

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.40  E-value=1.8e-12  Score=92.58  Aligned_cols=125  Identities=18%  Similarity=0.318  Sum_probs=87.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      .||+.|+..++..|.++++..+++++++|+          ++...+.+...++..........+.|++|++||.|+....
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----------~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~  130 (186)
T d1f6ba_          61 TFDLGGHIQARRVWKNYLPAINGIVFLVDC----------ADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI  130 (186)
T ss_dssp             EEEECC----CCGGGGGGGGCSEEEEEEET----------TCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC
T ss_pred             cccccchhhhhhHHhhhhcccceeeeeeec----------cCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccC
Confidence            489999999999999999999999999999          7888888888888887777777899999999999986532


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      .   ...+.+.+........    .....                     ......+.+.++++||++|+||+++|+++.
T Consensus       131 ~---~~~i~~~~~~~~~~~~----~~~~~---------------------~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~  182 (186)
T d1f6ba_         131 S---EERLREMFGLYGQTTG----KGSVS---------------------LKELNARPLEVFMCSVLKRQGYGEGFRWMA  182 (186)
T ss_dssp             C---HHHHHHHHTCTTTCCC----SSCCC---------------------TTTCCSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred             C---HHHHHHHHhhcccchh----hhhhh---------------------HHHhhcCCCEEEEEeCCCCCCHHHHHHHHH
Confidence            1   1222223222221000    00000                     000234567889999999999999999998


Q ss_pred             HHH
Q psy12099        161 DII  163 (174)
Q Consensus       161 ~~i  163 (174)
                      +.|
T Consensus       183 ~~i  185 (186)
T d1f6ba_         183 QYI  185 (186)
T ss_dssp             TTC
T ss_pred             Hhh
Confidence            653

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=4.7e-12  Score=90.99  Aligned_cols=104  Identities=15%  Similarity=0.179  Sum_probs=65.9

Q ss_pred             CeeCCCCchhhhh--------HhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDERRK--------WIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r~~--------w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +|||+|+......        ...++++++++|+|+|.          ++....  ...++..+++.. ..+.|+++|+|
T Consensus        57 ~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~----------~~~~~~--~~~~i~~~l~~~-~~~~piilv~N  123 (178)
T d1wf3a1          57 FVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDL----------RHPPTP--EDELVARALKPL-VGKVPILLVGN  123 (178)
T ss_dssp             EEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEET----------TSCCCH--HHHHHHHHHGGG-TTTSCEEEEEE
T ss_pred             ecccccccccccccchhcccccccccccccceeeeech----------hhhhcc--cccchhhheecc-ccchhhhhhhc
Confidence            5899998554333        34457899999999999          343222  223444444432 35789999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI  152 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i  152 (174)
                      |+|+......                                  +.+.+.+    ..       ....++++||+++.||
T Consensus       124 K~Dl~~~~~~----------------------------------~~~~~~~----~~-------~~~~~~~iSA~~~~gi  158 (178)
T d1wf3a1         124 KLDAAKYPEE----------------------------------AMKAYHE----LL-------PEAEPRMLSALDERQV  158 (178)
T ss_dssp             CGGGCSSHHH----------------------------------HHHHHHH----TS-------TTSEEEECCTTCHHHH
T ss_pred             ccccccCHHH----------------------------------HHHHHHh----hc-------ccCceEEEecCCCCCH
Confidence            9998543211                                  1111111    00       1234567899999999


Q ss_pred             HHHHHHHHHH
Q psy12099        153 RRVFNDCRDI  162 (174)
Q Consensus       153 ~~~f~~~~~~  162 (174)
                      +++++.|.+.
T Consensus       159 ~~L~~~i~~~  168 (178)
T d1wf3a1         159 AELKADLLAL  168 (178)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1.9e-10  Score=84.16  Aligned_cols=69  Identities=17%  Similarity=0.312  Sum_probs=53.5

Q ss_pred             CeeCCCCchhh-hhHhhhhcCCCEEEEEEeCCCccccccCCCCcch-HHHHHHHHHHHHcCC--CCCCCcEEEEEeCCch
Q psy12099          1 MFDVGGQRDER-RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNR-LRESLDLFKSIWNNR--WLRTISVILFLNKQDL   76 (174)
Q Consensus         1 iwD~~Gq~~~r-~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~-~~~~~~~~~~i~~~~--~~~~~~iilv~NK~Dl   76 (174)
                      +||++|+++++ ..|..|+++++++++|+|.          ++..+ +.+..+++..++...  ...++|++|++||+|+
T Consensus        51 ~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~----------~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl  120 (207)
T d2fh5b1          51 LIDLPGHESLRFQLLDRFKSSARAVVFVVDS----------AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI  120 (207)
T ss_dssp             EEECCCCHHHHHHHHHHHGGGEEEEEEEEET----------TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTS
T ss_pred             eeeccccccccchhhhhhhhhccccceEEEc----------ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECccc
Confidence            59999999997 5788999999999999999          56554 455666666665432  2346899999999999


Q ss_pred             hhH
Q psy12099         77 LAE   79 (174)
Q Consensus        77 ~~~   79 (174)
                      +.+
T Consensus       121 ~~a  123 (207)
T d2fh5b1         121 AMA  123 (207)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            753

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.08  E-value=1.8e-10  Score=82.53  Aligned_cols=109  Identities=13%  Similarity=0.117  Sum_probs=66.6

Q ss_pred             CeeCCCCch-------hhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeC
Q psy12099          1 MFDVGGQRD-------ERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNK   73 (174)
Q Consensus         1 iwD~~Gq~~-------~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK   73 (174)
                      +|||+|...       .......++..++.+++++|.+.        .....+.....++....  ....+.|+++++||
T Consensus        53 ~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~--------~~~~~~~~~~~~~~~~~--~~~~~~p~iiv~NK  122 (180)
T d1udxa2          53 LADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAAD--------EPLKTLETLRKEVGAYD--PALLRRPSLVALNK  122 (180)
T ss_dssp             EEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTS--------CHHHHHHHHHHHHHHHC--HHHHHSCEEEEEEC
T ss_pred             EcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhccccc--------ccccchhhhhhhhhccc--cccchhhhhhhhhh
Confidence            599999532       22234456788999999999831        11223333333333221  12235799999999


Q ss_pred             CchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHH
Q psy12099         74 QDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIR  153 (174)
Q Consensus        74 ~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~  153 (174)
                      +|+..+...   ..+                             .+.    +.         .....++.+||++|+||+
T Consensus       123 ~D~~~~~~~---~~~-----------------------------~~~----~~---------~~~~~~~~iSA~tg~gid  157 (180)
T d1udxa2         123 VDLLEEEAV---KAL-----------------------------ADA----LA---------REGLAVLPVSALTGAGLP  157 (180)
T ss_dssp             CTTSCHHHH---HHH-----------------------------HHH----HH---------TTTSCEEECCTTTCTTHH
T ss_pred             hhhhhHHHH---HHH-----------------------------HHH----HH---------hcCCeEEEEEcCCCCCHH
Confidence            999765422   011                             111    10         123456789999999999


Q ss_pred             HHHHHHHHHHH
Q psy12099        154 RVFNDCRDIIQ  164 (174)
Q Consensus       154 ~~f~~~~~~i~  164 (174)
                      ++++.|.+.+.
T Consensus       158 ~L~~~i~~~l~  168 (180)
T d1udxa2         158 ALKEALHALVR  168 (180)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.06  E-value=3.9e-10  Score=81.02  Aligned_cols=112  Identities=12%  Similarity=0.030  Sum_probs=72.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      ++|++|+..|..........++++++|+|.+          .... ....+.+..+..    .+.|+++++||+|+....
T Consensus        63 ~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~----------~g~~-~~~~~~~~~~~~----~~~p~iiv~NKiD~~~~~  127 (179)
T d1wb1a4          63 LVDAPGHADLIRAVVSAADIIDLALIVVDAK----------EGPK-TQTGEHMLILDH----FNIPIIVVITKSDNAGTE  127 (179)
T ss_dssp             ECCCSSHHHHHHHHHHHTTSCCEEEEEEETT----------TCSC-HHHHHHHHHHHH----TTCCBCEEEECTTSSCHH
T ss_pred             ccccccccccccchhhhhhhccccccccccc----------cccc-hhhhhhhhhhhh----cCCcceeccccccccCHH
Confidence            4799999999998888999999999999994          2211 122233333322    368999999999987543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  .                           ..+...+.+...+        ..-....+..+||++|+||.++++.|.
T Consensus       128 ~~--~---------------------------~~~~~~~~~~~~~--------~~~~~~~iv~iSA~~g~gi~eL~~~I~  170 (179)
T d1wb1a4         128 EI--K---------------------------RTEMIMKSILQST--------HNLKNSSIIPISAKTGFGVDELKNLII  170 (179)
T ss_dssp             HH--H---------------------------HHHHHHHHHHHHS--------SSGGGCCEEECCTTTCTTHHHHHHHHH
T ss_pred             HH--H---------------------------HHHHHHHHHHHHh--------hcCCCCeEEEEEccCCcCHHHHHHHHH
Confidence            11  0                           0111111111111        011234667899999999999998887


Q ss_pred             HHHH
Q psy12099        161 DIIQ  164 (174)
Q Consensus       161 ~~i~  164 (174)
                      +.+-
T Consensus       171 ~~l~  174 (179)
T d1wb1a4         171 TTLN  174 (179)
T ss_dssp             HHHH
T ss_pred             hcCC
Confidence            6653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=7.9e-11  Score=82.69  Aligned_cols=101  Identities=14%  Similarity=0.176  Sum_probs=66.3

Q ss_pred             CeeCCCCchhh--------hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDER--------RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r--------~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +||++|.....        .....++++++.+++++|.          .+...+..... +..++... ..+.|++|++|
T Consensus        53 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~----------~~~~~~~~~~~-~~~~~~~~-~~~~~iilv~N  120 (161)
T d2gj8a1          53 IIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDG----------TTTDAVDPAEI-WPEFIARL-PAKLPITVVRN  120 (161)
T ss_dssp             EEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEET----------TTCCCCSHHHH-CHHHHHHS-CTTCCEEEEEE
T ss_pred             eccccccccccccchhHHHHHHHHHHHhccccceeecc----------ccccchhhhhh-hhhhhhhc-ccccceeeccc
Confidence            47888864332        2345678899999999999          44444433333 33333322 24689999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENI  152 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i  152 (174)
                      |+|+..+...     +.    +                                         .....++++||+++.||
T Consensus       121 K~Dl~~~~~~-----~~----~-----------------------------------------~~~~~~~~iSAk~~~gi  150 (161)
T d2gj8a1         121 KADITGETLG-----MS----E-----------------------------------------VNGHALIRLSARTGEGV  150 (161)
T ss_dssp             CHHHHCCCCE-----EE----E-----------------------------------------ETTEEEEECCTTTCTTH
T ss_pred             hhhhhhhHHH-----HH----H-----------------------------------------hCCCcEEEEECCCCCCH
Confidence            9998653211     11    0                                         12245678999999999


Q ss_pred             HHHHHHHHHHH
Q psy12099        153 RRVFNDCRDII  163 (174)
Q Consensus       153 ~~~f~~~~~~i  163 (174)
                      ++++++|.+.|
T Consensus       151 ~~L~~~l~~~l  161 (161)
T d2gj8a1         151 DVLRNHLKQSM  161 (161)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHhhC
Confidence            99999998753

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.02  E-value=1.9e-09  Score=80.31  Aligned_cols=141  Identities=9%  Similarity=-0.026  Sum_probs=79.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +.||+|++.|-.........+|++|+|+|..          +.-. ......+..+..    .+.|++|++||+|+....
T Consensus        74 ~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~----------~g~~-~~~~~~~~~~~~----~~~p~iivlNK~D~~~~~  138 (227)
T d1g7sa4          74 FIDTPGHEAFTTLRKRGGALADLAILIVDIN----------EGFK-PQTQEALNILRM----YRTPFVVAANKIDRIHGW  138 (227)
T ss_dssp             EECCCTTSCCTTSBCSSSBSCSEEEEEEETT----------TCCC-HHHHHHHHHHHH----TTCCEEEEEECGGGSTTC
T ss_pred             cccccceecccccchhcccccceEEEEEecc----------cCcc-cchhHHHHHhhc----CCCeEEEEEECccCCCch
Confidence            4799999999888777889999999999993          2111 223344444432    368999999999997654


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhh-----cCCCCCcceeeeecccccchhHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRIST-----ASGDGKHYCYPHFTCAVDTENIRRV  155 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~-----~~~~~~~~~~~~~tsA~d~~~i~~~  155 (174)
                      ......++...+......          -.....+...+++.........     ........+.+..+||++|.||+++
T Consensus       139 ~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~L  208 (227)
T d1g7sa4         139 RVHEGRPFMETFSKQDIQ----------VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPEL  208 (227)
T ss_dssp             CCCTTCCHHHHHTTSCHH----------HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHH
T ss_pred             hhhhhHHHHHhhhcchHH----------HHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHH
Confidence            221112222222211100          0000111122222222211100     0001123356778999999999999


Q ss_pred             HHHHHHHHHHh
Q psy12099        156 FNDCRDIIQRM  166 (174)
Q Consensus       156 f~~~~~~i~~~  166 (174)
                      ++.+.+...+.
T Consensus       209 l~~l~~l~~~~  219 (227)
T d1g7sa4         209 LTMLMGLAQQY  219 (227)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99988766543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.98  E-value=1.4e-09  Score=77.09  Aligned_cols=107  Identities=15%  Similarity=0.188  Sum_probs=65.7

Q ss_pred             CeeCCCC---------chhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEE
Q psy12099          1 MFDVGGQ---------RDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFL   71 (174)
Q Consensus         1 iwD~~Gq---------~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~   71 (174)
                      +||++|.         ......+..++..++.++++.|.          +..... ....++..+ +.   .++|+++++
T Consensus        52 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~----------~~~~~~-~~~~~~~~l-~~---~~~pviiv~  116 (171)
T d1mkya1          52 LVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDG----------KRGITK-EDESLADFL-RK---STVDTILVA  116 (171)
T ss_dssp             EEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEET----------TTCCCH-HHHHHHHHH-HH---HTCCEEEEE
T ss_pred             cccccceeeeeccccccccccccccccccCcEEEEeecc----------cccccc-ccccccccc-cc---ccccccccc
Confidence            3777773         22344556667899999999998          333222 222333333 22   357999999


Q ss_pred             eCCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchh
Q psy12099         72 NKQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTEN  151 (174)
Q Consensus        72 NK~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~  151 (174)
                      ||+|+..+.-.    .+...+...                                         ....++++||++|.|
T Consensus       117 NK~Dl~~~~~~----~~~~~~~~~-----------------------------------------~~~~~i~iSAk~g~g  151 (171)
T d1mkya1         117 NKAENLREFER----EVKPELYSL-----------------------------------------GFGEPIPVSAEHNIN  151 (171)
T ss_dssp             ESCCSHHHHHH----HTHHHHGGG-----------------------------------------SSCSCEECBTTTTBS
T ss_pred             hhhhhhhhhhh----HHHHHHHhc-----------------------------------------CCCCeEEEecCCCCC
Confidence            99999764321    111110000                                         011345799999999


Q ss_pred             HHHHHHHHHHHHHHhh
Q psy12099        152 IRRVFNDCRDIIQRMH  167 (174)
Q Consensus       152 i~~~f~~~~~~i~~~~  167 (174)
                      |++++++|.+.+-.+.
T Consensus       152 id~L~~~i~~~l~e~~  167 (171)
T d1mkya1         152 LDTMLETIIKKLEEKG  167 (171)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCCC
Confidence            9999999998775543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.95  E-value=2.5e-10  Score=81.68  Aligned_cols=26  Identities=23%  Similarity=0.114  Sum_probs=21.8

Q ss_pred             eeeecccccchhHHHHHHHHHHHHHH
Q psy12099        140 YPHFTCAVDTENIRRVFNDCRDIIQR  165 (174)
Q Consensus       140 ~~~~tsA~d~~~i~~~f~~~~~~i~~  165 (174)
                      .+..+||++|.||+++++.|.+.+-+
T Consensus       158 ~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         158 VFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             HEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHccC
Confidence            35579999999999999999887753

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.85  E-value=6.6e-09  Score=74.27  Aligned_cols=104  Identities=16%  Similarity=0.195  Sum_probs=61.4

Q ss_pred             chhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhccccc
Q psy12099          8 RDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSR   87 (174)
Q Consensus         8 ~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~   87 (174)
                      ......+..+.+.++++++|+|.+          .... .....+...+..    .+.|+++++||+|+......    .
T Consensus        79 ~~~~~~~~~~~~~~dvii~v~d~~----------~~~~-~~~~~~~~~~~~----~~~~~i~v~nK~D~~~~~~~----~  139 (186)
T d1mkya2          79 KYSNYRVVDSIEKADVVVIVLDAT----------QGIT-RQDQRMAGLMER----RGRASVVVFNKWDLVVHREK----R  139 (186)
T ss_dssp             CSCCHHHHHHHHHCSEEEEEEETT----------TCCC-HHHHHHHHHHHH----TTCEEEEEEECGGGSTTGGG----C
T ss_pred             cchhHHHHHHHhcCCEEEEeeccc----------ccch-hhHHHHHHHHHH----cCCceeeeccchhhhcchhh----h
Confidence            334445555677899999999993          2211 222233333322    36799999999998654311    1


Q ss_pred             hhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHHHHHH
Q psy12099         88 LEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQ  164 (174)
Q Consensus        88 l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~~~i~  164 (174)
                                                .++..+.+...+..        .....++.+||++|.||+++++.|.+.+-
T Consensus       140 --------------------------~~~~~~~~~~~~~~--------~~~~~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         140 --------------------------YDEFTKLFREKLYF--------IDYSPLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             --------------------------HHHHHHHHHHHCGG--------GTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             --------------------------hhhHHHHHHHHhcc--------cCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence                                      11122222221110        11245678999999999999999966553

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.78  E-value=5.2e-09  Score=74.94  Aligned_cols=111  Identities=14%  Similarity=0.124  Sum_probs=64.8

Q ss_pred             CeeCCCCchhh----hhHh---hhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHH-HHHHHHcCCCCCCCcEEEEEe
Q psy12099          1 MFDVGGQRDER----RKWI---QCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLD-LFKSIWNNRWLRTISVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r----~~w~---~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~-~~~~i~~~~~~~~~~iilv~N   72 (174)
                      +|||+|..+..    .++.   .+++.++.++++++.+..+       .......... ............+.|+++++|
T Consensus        53 ~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~N  125 (185)
T d1lnza2          53 MADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLE-------GRDPYDDYLTINQELSEYNLRLTERPQIIVAN  125 (185)
T ss_dssp             EEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSS-------CCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEE
T ss_pred             EecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccc-------cchhhhhhhhhhhccchhhhhccCCcchhhcc
Confidence            58999963322    2222   2345688899888874321       1111221111 122223344556789999999


Q ss_pred             CCchhhHHHhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHH
Q psy12099         73 KQDLLAEKVKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFI  121 (174)
Q Consensus        73 K~Dl~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i  121 (174)
                      |+|+...+..  ...+.+.+.. +.+..+.||++|.|.++..+...+.+
T Consensus       126 K~Dl~~~~~~--~~~~~~~~~~-~~~v~~iSA~~g~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         126 KMDMPEAAEN--LEAFKEKLTD-DYPVFPISAVTREGLRELLFEVANQL  171 (185)
T ss_dssp             CTTSTTHHHH--HHHHHHHCCS-CCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred             ccchHhHHHH--HHHHHHHhcc-CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            9999866433  2344444432 34568999999999877666555443

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.68  E-value=3.8e-08  Score=71.86  Aligned_cols=111  Identities=14%  Similarity=0.122  Sum_probs=68.7

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +.|++|++.|-+....-...++++|+|+|..          +.-......+.+..+..   ..-.|++++.||+|+....
T Consensus        90 iiD~PGH~df~~~~~~~~~~ad~ailvVda~----------~gi~~~~t~e~~~~~~~---~~i~~iIV~vNK~Dl~~~~  156 (205)
T d2qn6a3          90 FIDAPGHEVLMATMLSGAALMDGAILVVAAN----------EPFPQPQTREHFVALGI---IGVKNLIIVQNKVDVVSKE  156 (205)
T ss_dssp             EEECSCHHHHHHHHHHTSSCCSEEEEEEETT----------SCSSCHHHHHHHHHHHH---TTCCCEEEEEECGGGSCHH
T ss_pred             EeccchHHHHHhhhhcceecccccccccccc----------ccccchhHHHHHHHHHH---cCCceeeeccccCCCccch
Confidence            4699999999887777788999999999993          32111222333333221   2235899999999997543


Q ss_pred             HhccccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHH
Q psy12099         81 VKAGKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCR  160 (174)
Q Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~  160 (174)
                      ..  ...                          .....+++.       .   .....+.+..+||+.|.||.++++.+.
T Consensus       157 ~~--~~~--------------------------~~~~~~~l~-------~---~~~~~~p~ipiSA~~g~nI~~L~e~i~  198 (205)
T d2qn6a3         157 EA--LSQ--------------------------YRQIKQFTK-------G---TWAENVPIIPVSALHKINIDSLIEGIE  198 (205)
T ss_dssp             HH--HHH--------------------------HHHHHHHHT-------T---STTTTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             HH--HHH--------------------------HHHHHHHhc-------c---ccCCCCeEEEEeCCCCCChHHHHHHHH
Confidence            22  000                          011111110       0   112335677899999999999998876


Q ss_pred             HH
Q psy12099        161 DI  162 (174)
Q Consensus       161 ~~  162 (174)
                      ..
T Consensus       199 ~~  200 (205)
T d2qn6a3         199 EY  200 (205)
T ss_dssp             HH
T ss_pred             hh
Confidence            54

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.68  E-value=4.2e-08  Score=71.00  Aligned_cols=110  Identities=12%  Similarity=0.134  Sum_probs=68.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +.||+|++.|......-...++++++|+|.          .+.-......+.+..+..   ....+++++.||+|+.+..
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda----------~~g~~~~~t~e~~~~~~~---~~~~~iiv~inK~D~~d~~  148 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAA----------NEPCPRPQTREHLMALQI---IGQKNIIIAQNKIELVDKE  148 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEET----------TSCSSCHHHHHHHHHHHH---HTCCCEEEEEECGGGSCHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccch----------hhhhhhhhhHHHHHHHHH---hcCccceeeeecccchhhH
Confidence            469999999988877778899999999999          332111222233322211   1234688899999987643


Q ss_pred             Hhc-cccchhhhhhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHH
Q psy12099         81 VKA-GKSRLEDYFQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDC  159 (174)
Q Consensus        81 ~~~-~~~~l~~~~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~  159 (174)
                      ... ....+.+++..+.                                       ...+.+..+||++|+||.++++.+
T Consensus       149 ~~~~~~~~~~~~~~~~~---------------------------------------~~~~~iIpiSA~~G~ni~~Ll~~I  189 (195)
T d1kk1a3         149 KALENYRQIKEFIEGTV---------------------------------------AENAPIIPISALHGANIDVLVKAI  189 (195)
T ss_dssp             HHHHHHHHHHHHHTTST---------------------------------------TTTCCEEECBTTTTBSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccc---------------------------------------CCCCeEEEEECCCCCCHHHHHHHH
Confidence            210 0011122222111                                       123556789999999999988887


Q ss_pred             HHH
Q psy12099        160 RDI  162 (174)
Q Consensus       160 ~~~  162 (174)
                      .+.
T Consensus       190 ~~~  192 (195)
T d1kk1a3         190 EDF  192 (195)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.65  E-value=5.1e-08  Score=70.20  Aligned_cols=97  Identities=9%  Similarity=0.170  Sum_probs=58.8

Q ss_pred             hhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhccccchhhh
Q psy12099         12 RKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDY   91 (174)
Q Consensus        12 ~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~   91 (174)
                      ..+.+.+..++++++++|.          ...-. ....++++.+ +.   .+.|+++|+||+|+..+..      +   
T Consensus        97 ~~~~~~~~~~~~vi~viD~----------~~~~~-~~~~~~~~~l-~~---~~~piivv~NK~D~~~~~~------~---  152 (195)
T d1svia_          97 ETYITTREELKAVVQIVDL----------RHAPS-NDDVQMYEFL-KY---YGIPVIVIATKADKIPKGK------W---  152 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEET----------TSCCC-HHHHHHHHHH-HH---TTCCEEEEEECGGGSCGGG------H---
T ss_pred             hhhhccccchhhhhhhhhc----------ccccc-cccccccccc-cc---ccCcceechhhccccCHHH------H---
Confidence            3445666788999999998          32211 1222333333 22   3579999999999854321      1   


Q ss_pred             hhccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhhhcCCCCCcceeeeecccccchhHHHHHHHHHHHH
Q psy12099         92 FQEFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRISTASGDGKHYCYPHFTCAVDTENIRRVFNDCRDII  163 (174)
Q Consensus        92 ~~~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~~~~~tsA~d~~~i~~~f~~~~~~i  163 (174)
                                             ++..+.+.+.+        .......++.+||+++.|+++++++|.+.|
T Consensus       153 -----------------------~~~~~~~~~~l--------~~~~~~~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         153 -----------------------DKHAKVVRQTL--------NIDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             -----------------------HHHHHHHHHHH--------TCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             -----------------------HHHHHHHHHHh--------cccCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence                                   11111111111        112335667899999999999999998775

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=1.2e-08  Score=73.91  Aligned_cols=69  Identities=19%  Similarity=0.325  Sum_probs=52.1

Q ss_pred             CeeCCCCchhhhhHhhhhc----CCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHH---HcCCCCCCCcEEEEEeC
Q psy12099          1 MFDVGGQRDERRKWIQCFN----DVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSI---WNNRWLRTISVILFLNK   73 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~----~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i---~~~~~~~~~~iilv~NK   73 (174)
                      +||++|+++++..|..++.    .++.+++++|.+         ....++.+...|+..+   ++.....++|+++++||
T Consensus        50 l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK  120 (209)
T d1nrjb_          50 LVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDST---------VDPKKLTTTAEFLVDILSITESSCENGIDILIACNK  120 (209)
T ss_dssp             EEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETT---------SCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEEC
T ss_pred             EEecccccchhhHHHHHHHHHhhhccccceEEEEe---------cccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEe
Confidence            5999999999999998875    458899999984         3455566666655443   33344568999999999


Q ss_pred             Cchhh
Q psy12099         74 QDLLA   78 (174)
Q Consensus        74 ~Dl~~   78 (174)
                      +|+..
T Consensus       121 ~D~~~  125 (209)
T d1nrjb_         121 SELFT  125 (209)
T ss_dssp             TTSTT
T ss_pred             ecccc
Confidence            99865

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.56  E-value=1.3e-07  Score=65.54  Aligned_cols=61  Identities=16%  Similarity=0.335  Sum_probs=38.0

Q ss_pred             CeeCCCCc--------hh-hhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEE
Q psy12099          1 MFDVGGQR--------DE-RRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFL   71 (174)
Q Consensus         1 iwD~~Gq~--------~~-r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~   71 (174)
                      +|||+|-.        .+ .......+++++++|+|+|.          ++....... .....+      ...++++++
T Consensus        52 ~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~----------~~~~~~~~~-~~~~~~------~~~~~i~~~  114 (160)
T d1xzpa2          52 IVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDA----------SSPLDEEDR-KILERI------KNKRYLVVI  114 (160)
T ss_dssp             EEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEET----------TSCCCHHHH-HHHHHH------TTSSEEEEE
T ss_pred             eccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeC----------CCCcchhhh-hhhhhc------ccccceeee
Confidence            58999842        11 11222346789999999999          444433322 222221      356899999


Q ss_pred             eCCchhh
Q psy12099         72 NKQDLLA   78 (174)
Q Consensus        72 NK~Dl~~   78 (174)
                      ||.|+..
T Consensus       115 ~k~d~~~  121 (160)
T d1xzpa2         115 NKVDVVE  121 (160)
T ss_dssp             EECSSCC
T ss_pred             eeccccc
Confidence            9999875

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.51  E-value=1.7e-07  Score=68.22  Aligned_cols=64  Identities=17%  Similarity=0.243  Sum_probs=45.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~   78 (174)
                      +.||+|++.|-+-...-.+.+|++|+|+|.+          +- -.....+.+..+..   ....|++++.||+|+..
T Consensus        70 ~iDtPGh~~f~~~~~~~~~~aD~allVVda~----------~G-~~~QT~~~~~~a~~---~~~~~iIv~iNK~D~~~  133 (196)
T d1d2ea3          70 HTDCPGHADYVKNMITGTAPLDGCILVVAAN----------DG-PMPQTREHLLLARQ---IGVEHVVVYVNKADAVQ  133 (196)
T ss_dssp             EEECSSHHHHHHHHHHTSSCCSEEEEEEETT----------TC-SCHHHHHHHHHHHH---TTCCCEEEEEECGGGCS
T ss_pred             eecCcchHHHHHHHHHHHhhcCeEEEEEEcC----------CC-CchhHHHHHHHHHH---hcCCcEEEEEecccccc
Confidence            4699999999887777778999999999993          22 12334444444332   23458999999999864

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.35  E-value=2.1e-06  Score=62.50  Aligned_cols=63  Identities=16%  Similarity=0.286  Sum_probs=46.1

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCc-EEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTIS-VILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~-iilv~NK~Dl~~   78 (174)
                      +.||+|++.|-+-...-.+.+|++|+|+|.          .+- -.....+.+..+..    .++| ++++.||+|+..
T Consensus        71 iiDtPGh~df~~~~~~~~~~aD~avlVvda----------~~G-v~~qt~~~~~~~~~----~gi~~iiv~iNK~D~~~  134 (204)
T d2c78a3          71 HVDCPGHADYIKNMITGAAQMDGAILVVSA----------ADG-PMPQTREHILLARQ----VGVPYIVVFMNKVDMVD  134 (204)
T ss_dssp             EEECCCSGGGHHHHHHHHTTCSSEEEEEET----------TTC-CCHHHHHHHHHHHH----TTCCCEEEEEECGGGCC
T ss_pred             EEeCCCchhhHHHHHHHHHHCCEEEEEEEC----------CCC-CcHHHHHHHHHHHH----cCCCeEEEEEEecccCC
Confidence            479999999998888888999999999999          332 22344454554432    2554 788899999854

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.25  E-value=4.8e-06  Score=61.37  Aligned_cols=63  Identities=14%  Similarity=0.077  Sum_probs=44.2

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCC-cEEEEEeCCchhh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTI-SVILFLNKQDLLA   78 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~-~iilv~NK~Dl~~   78 (174)
                      +.|++|++.|-.-...-...+|++|+|+|..+          . -.....+.+.-+. .   .++ .++++.||+|+.+
T Consensus        93 iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~----------G-~~~Qt~e~~~~~~-~---~gv~~iiv~vNK~D~~~  156 (222)
T d1zunb3          93 IADTPGHEQYTRNMATGASTCDLAIILVDARY----------G-VQTQTRRHSYIAS-L---LGIKHIVVAINKMDLNG  156 (222)
T ss_dssp             EEECCCSGGGHHHHHHHHTTCSEEEEEEETTT----------C-SCHHHHHHHHHHH-H---TTCCEEEEEEECTTTTT
T ss_pred             EEeccchhhhhhhhccccccCceEEEEecccc----------C-cccchHHHHHHHH-H---cCCCEEEEEEEcccccc
Confidence            47999999999888888899999999999932          1 1122333333322 1   233 5888999999975

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.00  E-value=4.2e-05  Score=57.71  Aligned_cols=62  Identities=10%  Similarity=0.049  Sum_probs=48.6

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchh
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLL   77 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~   77 (174)
                      ++||+|+..|..-...-.+-++++|+|+|.          .+ .-...+...|+...+    .+.|.+++.||+|..
T Consensus        71 ~iDtPGh~dF~~e~~~al~~~D~avlvvda----------~~-Gv~~~t~~~~~~~~~----~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          71 LLDAPGYGDFVGEIRGALEAADAALVAVSA----------EA-GVQVGTERAWTVAER----LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             EEECCCSGGGHHHHHHHHHHCSEEEEEEET----------TT-CSCHHHHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             EEccCchhhhhhhhhhhhcccCceEEEeec----------cC-CccchhHHHHHhhhh----ccccccccccccccc
Confidence            579999999999888889999999999999          32 223344555665543    368999999999975

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.92  E-value=4.2e-05  Score=55.98  Aligned_cols=65  Identities=20%  Similarity=0.194  Sum_probs=43.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcch------HHHHHHHHHHHHcCCCCCCCcEEEEEeCC
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNR------LRESLDLFKSIWNNRWLRTISVILFLNKQ   74 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~------~~~~~~~~~~i~~~~~~~~~~iilv~NK~   74 (174)
                      +.||+|+..|-.-...-.+-+|++|+|+|..          +--.      .....+.+.-..   .+...+++++.||+
T Consensus        85 iiDtPGH~df~~~~~~g~~~~D~allVVda~----------~G~~~~t~~~~~qt~e~l~~~~---~~~~~~iIv~iNK~  151 (224)
T d1jnya3          85 IIDAPGHRDFVKNMITGASQADAAILVVSAK----------KGEYEAGMSVEGQTREHIILAK---TMGLDQLIVAVNKM  151 (224)
T ss_dssp             ECCCSSSTTHHHHHHHTSSCCSEEEEEEECS----------TTHHHHHHSTTCHHHHHHHHHH---HTTCTTCEEEEECG
T ss_pred             EeeCCCcHHHHHHHHHHHHhhceEEEEEecc----------cCcccccccccchhHHHHHHHH---HhCCCceEEEEEcc
Confidence            4699999999998888889999999999993          2100      011112111111   12345788899999


Q ss_pred             chhh
Q psy12099         75 DLLA   78 (174)
Q Consensus        75 Dl~~   78 (174)
                      |+..
T Consensus       152 D~~~  155 (224)
T d1jnya3         152 DLTE  155 (224)
T ss_dssp             GGSS
T ss_pred             cCCC
Confidence            9864

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.91  E-value=1.9e-05  Score=59.95  Aligned_cols=65  Identities=18%  Similarity=0.160  Sum_probs=50.5

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      |.||.|+..|-.-...-++-++++|+|+|.+          +-- -..+...|+....    .+.|.++|.||+|.....
T Consensus        75 ~iDtPG~~dF~~e~~~~l~~~D~avlVvda~----------~Gv-~~~T~~~w~~a~~----~~lP~i~fINKmDr~~ad  139 (276)
T d2bv3a2          75 IIDAPGHVDFTIEVERSMRVLDGAIVVFDSS----------QGV-EPQSETVWRQAEK----YKVPRIAFANKMDKTGAD  139 (276)
T ss_dssp             EECCCSSSSCSTTHHHHHHHCCEEEEEEETT----------TSS-CHHHHHHHHHHHT----TTCCEEEEEECTTSTTCC
T ss_pred             EecCCchhhhHHHHHHHHHhhhheEEecccc----------CCc-chhHHHHHHHHHH----cCCCEEEEEecccccccc
Confidence            5799999999998888899999999999993          322 2344455666543    378999999999998643

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=0.00015  Score=53.60  Aligned_cols=63  Identities=17%  Similarity=0.241  Sum_probs=43.8

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHH-------HHHHHHHHHHcCCCCCCC-cEEEEEe
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLR-------ESLDLFKSIWNNRWLRTI-SVILFLN   72 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~-------~~~~~~~~i~~~~~~~~~-~iilv~N   72 (174)
                      |.|+.|+..|-+-+..=.+-+|++|+|+|.          . ...++       .+.+.+.....    -++ +++++.|
T Consensus        88 iiDtPGH~df~~~~~~g~~~~D~ailvvda----------~-~G~~e~g~~~~~QT~eh~~~~~~----~gv~~iiv~iN  152 (239)
T d1f60a3          88 VIDAPGHRDFIKNMITGTSQADCAILIIAG----------G-VGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVN  152 (239)
T ss_dssp             EEECCCCTTHHHHHHHSSSCCSEEEEEEEC----------S-HHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEE
T ss_pred             EEECCCcHHHHHHHHHHHHHhCEEEEEEEC----------C-CCccccccCchHhHHHHHHHHHH----cCCCeEEEEEE
Confidence            469999999998888888899999999998          2 22221       13333322211    234 5888999


Q ss_pred             CCchhh
Q psy12099         73 KQDLLA   78 (174)
Q Consensus        73 K~Dl~~   78 (174)
                      |+|+.+
T Consensus       153 KmD~~~  158 (239)
T d1f60a3         153 KMDSVK  158 (239)
T ss_dssp             CGGGGT
T ss_pred             CCCCCC
Confidence            999875

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.68  E-value=6.7e-05  Score=56.55  Aligned_cols=96  Identities=16%  Similarity=0.237  Sum_probs=66.1

Q ss_pred             HhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHHHhccccchhhhhh
Q psy12099         14 WIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEKVKAGKSRLEDYFQ   93 (174)
Q Consensus        14 w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~l~~~~~   93 (174)
                      .....+.+|.||+|+|.          ..+-+..+  ..+..++     ++.|++||+||+|+......   ....++|.
T Consensus         9 i~~~i~~~DvIl~V~Da----------R~P~ss~~--~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~---~~w~~~f~   68 (273)
T d1puja_           9 VTEKLKLIDIVYELVDA----------RIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVT---QQWKEHFE   68 (273)
T ss_dssp             HHHHGGGCSEEEEEEET----------TSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHH---HHHHHHHH
T ss_pred             HHHHHHhCCEEEEEEEC----------CCCCCCCC--HHHHHHH-----cCCCeEEEEECccCCchHHH---HHHHHHHH
Confidence            34468899999999998          33322211  2234443     25799999999999865433   34455666


Q ss_pred             ccCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHhh
Q psy12099         94 EFTRYQTPLDATPDPGEDPIVIRAKYFIRDEFLRIS  129 (174)
Q Consensus        94 ~~~~~~~~~~a~~~~g~~~~~~~a~~~i~~~f~~~~  129 (174)
                      .-.....+.+|..+.|.......+.+.+...+....
T Consensus        69 ~~~~~~i~isa~~~~~~~~~~~~~~~~l~~~~~~~~  104 (273)
T d1puja_          69 NQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMR  104 (273)
T ss_dssp             TTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHH
T ss_pred             hcCCccceeecccCCCccccchhhhhhhhhhhhhhh
Confidence            555556778999999988888888888777766654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=5.1e-05  Score=59.23  Aligned_cols=67  Identities=12%  Similarity=0.148  Sum_probs=51.3

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhHH
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAEK   80 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~~   80 (174)
                      +.||+|+..|-.-...-.+-+|++|+|+|.          .+- -...+...++....    .+.|++++.||+|.....
T Consensus       100 liDtPGh~dF~~ev~~al~~~D~allVVda----------~eG-v~~qT~~~~~~a~~----~~~p~i~viNKiDr~~~e  164 (341)
T d1n0ua2         100 LIDSPGHVDFSSEVTAALRVTDGALVVVDT----------IEG-VCVQTETVLRQALG----ERIKPVVVINKVDRALLE  164 (341)
T ss_dssp             EECCCCCCSSCHHHHHHHHTCSEEEEEEET----------TTB-SCHHHHHHHHHHHH----TTCEEEEEEECHHHHHHT
T ss_pred             EEcCCCcHHHHHHHHHHHhhcCceEEEEec----------ccC-cchhHHHHHHHHHH----cCCCeEEEEECccccccc
Confidence            479999999999888888999999999999          332 22344455555544    368999999999987654


Q ss_pred             Hh
Q psy12099         81 VK   82 (174)
Q Consensus        81 ~~   82 (174)
                      +.
T Consensus       165 l~  166 (341)
T d1n0ua2         165 LQ  166 (341)
T ss_dssp             SC
T ss_pred             HH
Confidence            43

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.57  E-value=9e-05  Score=55.07  Aligned_cols=31  Identities=13%  Similarity=0.215  Sum_probs=17.4

Q ss_pred             CeeCCCCchhhhhHhhhhcCCCEEEEEEeCC
Q psy12099          1 MFDVGGQRDERRKWIQCFNDVTAIIFVTACS   31 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y~~~~~~ii~v~d~s   31 (174)
                      +.|++|+..|-.....-..-++++|+|+|..
T Consensus       106 ~iDtPGH~df~~~~~~g~~~aD~ailVVda~  136 (245)
T d1r5ba3         106 LLDAPGHKGYVTNMINGASQADIGVLVISAR  136 (245)
T ss_dssp             ECCCCC-----------TTSCSEEEEEEECS
T ss_pred             eecccccccchhhhhhhhhhhcceeeEEEcC
Confidence            3599999999887777778899999999993

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=0.00055  Score=47.22  Aligned_cols=24  Identities=13%  Similarity=-0.143  Sum_probs=19.8

Q ss_pred             eeeeecccccchhHHHHHHHHHHH
Q psy12099        139 CYPHFTCAVDTENIRRVFNDCRDI  162 (174)
Q Consensus       139 ~~~~~tsA~d~~~i~~~f~~~~~~  162 (174)
                      ..++.+||++|.||+++++.|.+.
T Consensus       146 ~~~~~vSA~~g~gi~~L~~~i~~~  169 (179)
T d1egaa1         146 LDIVPISAETGLNVDTIAAIVRKH  169 (179)
T ss_dssp             SEEEECCTTTTTTHHHHHHHHHTT
T ss_pred             CCEEEEeCcCCCCHHHHHHHHHHh
Confidence            456789999999999998887653

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=0.00045  Score=47.68  Aligned_cols=24  Identities=0%  Similarity=0.001  Sum_probs=20.5

Q ss_pred             eeeeecccccchhHHHHHHHHHHH
Q psy12099        139 CYPHFTCAVDTENIRRVFNDCRDI  162 (174)
Q Consensus       139 ~~~~~tsA~d~~~i~~~f~~~~~~  162 (174)
                      ..++.+||++|.||+++++.|.+.
T Consensus       163 ~~~i~vSA~~g~Gid~L~~~i~~~  186 (188)
T d1puia_         163 VQVETFSSLKKQGVDKLRQKLDTW  186 (188)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CcEEEEeCCCCCCHHHHHHHHHHH
Confidence            567789999999999999887654

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.31  E-value=0.00027  Score=51.81  Aligned_cols=48  Identities=21%  Similarity=0.299  Sum_probs=29.2

Q ss_pred             cCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099         19 NDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus        19 ~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      .++|.+++|+++          ..+.--...++-|--+.   +..++|.+||+||+||..+
T Consensus         9 ANiD~vliV~s~----------~~P~~~~~~ldR~Lv~a---~~~~i~pvIvlnK~DL~~~   56 (225)
T d1u0la2           9 ANVDQVILVVTV----------KMPETSTYIIDKFLVLA---EKNELETVMVINKMDLYDE   56 (225)
T ss_dssp             ESCCEEEEEECS----------STTCCCHHHHHHHHHHH---HHTTCEEEEEECCGGGCCH
T ss_pred             ccCCEEEEEEeC----------CCCCCCHHHHHHHHHHH---HHcCCCEEEEEeCcccCCH
Confidence            588999999988          33221111122222222   2357899999999999754

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.20  E-value=8.6e-05  Score=53.94  Aligned_cols=24  Identities=8%  Similarity=-0.043  Sum_probs=20.3

Q ss_pred             ceeeeecccccchhHHHHHHHHHH
Q psy12099        138 YCYPHFTCAVDTENIRRVFNDCRD  161 (174)
Q Consensus       138 ~~~~~~tsA~d~~~i~~~f~~~~~  161 (174)
                      .+.+..+||++|+||++++..+.+
T Consensus       216 ~~~~v~vSa~~geGi~~L~~~l~e  239 (244)
T d1yrba1         216 PVRVLYLSAKTREGFEDLETLAYE  239 (244)
T ss_dssp             CCCCEECCTTTCTTHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456778999999999999988765

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.79  E-value=0.00015  Score=53.49  Aligned_cols=47  Identities=19%  Similarity=0.229  Sum_probs=29.0

Q ss_pred             cCCCEEEEEEeCCCccccccCCCCcc-hHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099         19 NDVTAIIFVTACSSYNMVLREDPTQN-RLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus        19 ~~~~~ii~v~d~s~~~~~~~e~~~~~-~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      -++|.+++|++.          .++. +..-. +-+--+.   ...+++.+||+||+||..+
T Consensus         9 ANiD~~~iV~s~----------~~P~~~~~~i-dR~Lv~a---~~~~i~pvIvlnK~DL~~~   56 (231)
T d1t9ha2           9 CNVDQAVLVFSA----------VQPSFSTALL-DRFLVLV---EANDIQPIICITKMDLIED   56 (231)
T ss_dssp             ECCCEEEEEEES----------TTTTCCHHHH-HHHHHHH---HTTTCEEEEEEECGGGCCC
T ss_pred             cccCEEEEEEEC----------CCCCCCHHHH-HHHHHHH---HHcCCCEEEEEeccccccc
Confidence            478999999987          3322 22222 2222222   2357899999999999753

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.43  E-value=0.011  Score=46.31  Aligned_cols=62  Identities=16%  Similarity=0.151  Sum_probs=36.9

Q ss_pred             CeeCCCCchhhhhHhhh-----hcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCc
Q psy12099          1 MFDVGGQRDERRKWIQC-----FNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQD   75 (174)
Q Consensus         1 iwD~~Gq~~~r~~w~~y-----~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~D   75 (174)
                      +|||+|-......-..|     +..++.+|++.|.          .-.   ......+..+..    .+.|+++|.||+|
T Consensus       111 l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~----------~~~---~~d~~l~~~l~~----~~k~~~~V~nK~D  173 (400)
T d1tq4a_         111 FWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISAT----------RFK---KNDIDIAKAISM----MKKEFYFVRTKVD  173 (400)
T ss_dssp             EEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESS----------CCC---HHHHHHHHHHHH----TTCEEEEEECCHH
T ss_pred             EEeCCCcccccccHHHHHHHhhhhcceEEEEecCC----------CCC---HHHHHHHHHHHH----cCCCEEEEEeCcc
Confidence            69999975443222222     4567887777765          221   122233444432    2679999999999


Q ss_pred             hhhH
Q psy12099         76 LLAE   79 (174)
Q Consensus        76 l~~~   79 (174)
                      ...+
T Consensus       174 ~~~~  177 (400)
T d1tq4a_         174 SDIT  177 (400)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            7543

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.83  E-value=0.039  Score=40.39  Aligned_cols=69  Identities=9%  Similarity=0.098  Sum_probs=38.4

Q ss_pred             CeeCCCCch-------hhhhHhhhh--cCCCEEEEEEeCCCccccccCCCC-cchHHHHHHHHHHHHcCCCCCCCcEEEE
Q psy12099          1 MFDVGGQRD-------ERRKWIQCF--NDVTAIIFVTACSSYNMVLREDPT-QNRLRESLDLFKSIWNNRWLRTISVILF   70 (174)
Q Consensus         1 iwD~~Gq~~-------~r~~w~~y~--~~~~~ii~v~d~s~~~~~~~e~~~-~~~~~~~~~~~~~i~~~~~~~~~~iilv   70 (174)
                      ++||+|-..       .......+.  .+.++++||+++..        .. ...-...+.++..++....  -.+++++
T Consensus        84 viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~--------~r~~~~~~~~l~~l~~~fg~~~--~~~~ivv  153 (257)
T d1h65a_          84 IIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDA--------YRVDNLDKLVAKAITDSFGKGI--WNKAIVA  153 (257)
T ss_dssp             EEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSC--------CCCCHHHHHHHHHHHHHHCGGG--GGGEEEE
T ss_pred             EEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCC--------CCCCHHHHHHHHHHHHHcchhh--hhCEEEE
Confidence            589999532       112222222  46788999998821        11 1112234455555543322  2478999


Q ss_pred             EeCCchhhH
Q psy12099         71 LNKQDLLAE   79 (174)
Q Consensus        71 ~NK~Dl~~~   79 (174)
                      +||.|...+
T Consensus       154 ~t~~D~~~~  162 (257)
T d1h65a_         154 LTHAQFSPP  162 (257)
T ss_dssp             EECCSCCCG
T ss_pred             EECcccCCc
Confidence            999998653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=90.66  E-value=0.3  Score=36.89  Aligned_cols=22  Identities=14%  Similarity=0.193  Sum_probs=13.1

Q ss_pred             eeeecccccchhHHHHHHHHHH
Q psy12099        140 YPHFTCAVDTENIRRVFNDCRD  161 (174)
Q Consensus       140 ~~~~tsA~d~~~i~~~f~~~~~  161 (174)
                      .+..|||+++++|+++++.|.+
T Consensus       234 ~V~~~SA~~g~Gi~eL~~~I~~  255 (327)
T d2p67a1         234 RVLTCSALEKRGIDEIWHAIID  255 (327)
T ss_dssp             EEEECBGGGTBSHHHHHHHHHH
T ss_pred             eeEEEEeeCCCCHHHHHHHHHH
Confidence            4455666666666666665544

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.59  E-value=0.23  Score=37.50  Aligned_cols=11  Identities=27%  Similarity=0.232  Sum_probs=9.2

Q ss_pred             EEEEeCCchhh
Q psy12099         68 ILFLNKQDLLA   78 (174)
Q Consensus        68 ilv~NK~Dl~~   78 (174)
                      +++.||+|+..
T Consensus       193 i~vvNKaD~~~  203 (323)
T d2qm8a1         193 MIAVNKADDGD  203 (323)
T ss_dssp             EEEEECCSTTC
T ss_pred             eeeEecccccc
Confidence            78899999764

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.14  E-value=0.4  Score=35.03  Aligned_cols=56  Identities=18%  Similarity=0.211  Sum_probs=35.2

Q ss_pred             hhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099         11 RRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus        11 r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ..++..|....+.+|+++.-+         ...-+..+...+.+.+-    ....++++|.||+|...+
T Consensus       152 ~~~~~~y~~~~~~~il~v~~a---------~~~~~~~~~~~~~~~~~----~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         152 RDMLMQFVTKENCLILAVSPA---------NSDLANSDALKIAKEVD----PQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHHHHHTSTTEEEEEEEES---------SSCGGGCHHHHHHHHHC----TTCSSEEEEEECGGGSCT
T ss_pred             HHHHHHHhcCccceeeeeccc---------ccchhhhHHHHHHHHhC----cCCCceeeEEeccccccc
Confidence            366778888888766655442         33333344555555542    234588999999998764

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=86.97  E-value=0.4  Score=35.23  Aligned_cols=56  Identities=23%  Similarity=0.265  Sum_probs=34.9

Q ss_pred             hhhHhhhhcCCCEEEEEEeCCCccccccCCCCcchHHHHHHHHHHHHcCCCCCCCcEEEEEeCCchhhH
Q psy12099         11 RRKWIQCFNDVTAIIFVTACSSYNMVLREDPTQNRLRESLDLFKSIWNNRWLRTISVILFLNKQDLLAE   79 (174)
Q Consensus        11 r~~w~~y~~~~~~ii~v~d~s~~~~~~~e~~~~~~~~~~~~~~~~i~~~~~~~~~~iilv~NK~Dl~~~   79 (174)
                      ..++..|..+++++|+++.-+         ...-.......+.+.+ .   .....+++|.||+|...+
T Consensus       158 ~~~~~~yi~~~~~~il~v~~~---------~~~~~~~~~~~~~~~~-~---~~~~r~i~Vitk~D~~~~  213 (306)
T d1jwyb_         158 RRMVMAYIKKQNAIIVAVTPA---------NTDLANSDALQLAKEV-D---PEGKRTIGVITKLDLMDK  213 (306)
T ss_dssp             HHHHHHHHHSTTEEEEEEEES---------SSCSTTCSHHHHHHHH-C---SSCSSEEEEEECTTSSCS
T ss_pred             HHHHHHHHhCCCceeEEeecc---------cccccccHHHHHHHHh-C---cCCCeEEEEEeccccccc
Confidence            467888999999977776432         2212222334444443 2   234589999999998743