Psyllid ID: psy12107

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
Protein Sequence
MCNIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPKK
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHcccccEEEEEccccccccccccHHHHHHcccccccccccccccEEEEEcccccccccccEEEcHHHHHHHHHHHcccccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHccccEEEccHHHHHHHHccccccccccccHHHHHcccccccHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccEEEcccccEEEEccccHHHHcccccccccccccccccEEEcccccccEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHcccccEEEEEccccccccccccHHHHHHcccccccccccccccEEEEEEccccccccccEEEcHHHHHHHHHHHHccccccccEEEcccccEEEEEEcHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHccccEccccHHHHHHHHccccccHccHHHHHHHHHccccccHHHHHHHHHHcccccEEEEEcccccccccEEEEccccccccEEEEEcccccccccccHHHHHHHHcccccEEccccEEEccccEEEEEccHHHHEEcccccccHHHHHHHHHHHHHHcccHHHEEEEccccccccccccc
Coil and Loop (DISEMBL)
MCNIPQLLEVGTkigatlpnfrgtivvggehdksknifgfkqlvtsqppdfqlpkispndlamlpyssgttgvpkgvklshnncavnleqcvhpdivnhiptsdtsqetVLSVLpffhiygfNGILNVVMMYGMhmitipkftpetYIECVVKYKPTILFVVPSLLLflashpavtpehLASIRevtcgaapatKSLIDKFKQKVQREDItirqgygmtetspctlytrfaipeaklgstgqLVMLGYlkneeatketvdsegwlhtgdvayydedgyfYIVDRTKELIKvkgnqvapykklaggvkfletiprnpagkvLRNElkvfgtnpkk
Flexible Loop (DISEMBL)
MCNIPQLLEVgtkigatlpnFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATkslidkfkqkvQREDitirqgygmtetspCTLYTRFAIPEAKLGSTGQLVMLGYLKNEEatketvdsegwlhtgdvayydeDGYFYIVDRTKELIKvkgnqvapykklaggvkfletiprnpagkvlrnelkvfgtnpkk
Low Complexity Region (SEG)
MCNIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPKK
Disordered region (IsUnstruct)
****PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVT****************AMLPYS*GTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNEL*********
Disordered Region (DISOPRED)
MCNIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTS*P*****PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNELKV**T****
Disordered Region (DISEMBL)
MCNIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPKK
Disordered Region (DISPRO)
MCNIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNELKVF******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCNIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	334	2.2.26 [Sep-21-2011]
Q54P77	551	Probable 4-coumarate--CoA	yes	N/A	0.751	0.455	0.390	3e-48
Q54P79	551	Probable 4-coumarate--CoA	no	N/A	0.751	0.455	0.383	3e-47
Q54P78	551	Probable 4-coumarate--CoA	no	N/A	0.754	0.457	0.371	2e-45
Q6ETN3	554	Probable 4-coumarate--CoA	yes	N/A	0.841	0.507	0.315	6e-44
O24145	547	4-coumarate--CoA ligase 1	N/A	N/A	0.760	0.464	0.375	6e-44
Q9S725	556	4-coumarate--CoA ligase 2	yes	N/A	0.811	0.487	0.367	3e-43
P41636	537	4-coumarate--CoA ligase O	N/A	N/A	0.739	0.459	0.363	2e-42
Q42982	569	Probable 4-coumarate--CoA	no	N/A	0.712	0.418	0.380	7e-42
Q67W82	559	Probable 4-coumarate--CoA	no	N/A	0.814	0.486	0.349	1e-41
Q6ZAC1	539	Probable 4-coumarate--CoA	no	N/A	0.829	0.513	0.344	1e-40

>sp|Q54P77|4CL1_DICDI Probable 4-coumarate--CoA ligase 1 OS=Dictyostelium discoideum GN=4cl1 PE=3 SV=1

 Score =  192 bits (488), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 116/297 (39%), Positives = 161/297 (54%), Gaps = 46/297 (15%)

Query: 37  IFGFKQLVTSQPPDFQLPKISPN-DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPD 95
           +  F QL+ +   D+ + +I P  D A++P+SSGTTG+ KGV LSH+N   N  Q     
Sbjct: 174 VMSFNQLINNNGKDYPIVRIDPKKDTAIIPFSSGTTGLFKGVCLSHHNIVSNTYQT---- 229

Query: 96  IVNHIPTSDTSQ-ETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKY 154
               I TS   + +TV+ +LPFFHIYG    L +++  G  ++ +PKF P  ++E + KY
Sbjct: 230 --QTIETSTYKKNDTVMGILPFFHIYGLMLFLMLMVKQGHRVVVLPKFEPVRFLELIQKY 287

Query: 155 KPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ 214
           K  I F+VP + +  A  P V    L+S+R +  GAAP +  + D  K++ +   + I+Q
Sbjct: 288 KVAISFIVPPVAIMFAKSPIVDKFDLSSLRTLFSGAAPLSSEVEDLIKERFKGR-LVIKQ 346

Query: 215 GYGMTETSPCTLYTRFAIPEA--KLGSTGQL----------------------------- 243
           GYG TE SP      F IP    K GS G L                             
Sbjct: 347 GYGATELSPAC----FVIPSGLVKSGSAGILLPNQLAKIISPETGENLGMGEKGEICIKG 402

Query: 244 --VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
             VMLGY  NE+AT E +D +G+L TGD+ Y DEDGY++IVDR+KELIK KG QV P
Sbjct: 403 PNVMLGYYNNEKATNEVIDKDGFLKTGDIGYVDEDGYYFIVDRSKELIKCKGFQVPP 459

Dictyostelium discoideum (taxid: 44689)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 2

>sp|Q54P79|4CL3_DICDI Probable 4-coumarate--CoA ligase 3 OS=Dictyostelium discoideum GN=4cl3 PE=3 SV=2

 Score =  189 bits (479), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/297 (38%), Positives = 162/297 (54%), Gaps = 46/297 (15%)

Query: 37  IFGFKQLVTSQPPDFQLPKIS-PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPD 95
           +  F QL  +   D+ + +I    D A++P+SSGTTG+ KGV LSH N   N  Q     
Sbjct: 174 VMSFNQLTNNNGKDYPIVRIDLTKDTAIIPFSSGTTGLFKGVCLSHYNLVSNTYQ----- 228

Query: 96  IVNHIPTSDTSQ-ETVLSVLPFFHIYGFNGILNVVMMY--GMHMITIPKFTPETYIECVV 152
               I TS   + ++V+ VLPFFH +G   +L++++M   G  ++T+PKF P  ++E + 
Sbjct: 229 -TQTIETSTYKKNDSVIGVLPFFHSFGL--MLHIMLMVKQGYRIVTLPKFEPVRFLELIK 285

Query: 153 KYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITI 212
           KYK  + F+VP + +  A  P V    L+S+R + CGAAP    + D  K++ +   + I
Sbjct: 286 KYKVAMSFIVPPIAIMFAKSPIVDKFDLSSLRTLFCGAAPLGSEIEDLIKERFKGR-LVI 344

Query: 213 RQGYGMTETSPCTLYTRFAIPEAKLGSTGQL----------------------------- 243
           +QGYG TE SPC   T   +   K GS+G L                             
Sbjct: 345 KQGYGATELSPCCFVTPNGL--VKSGSSGTLLPNLLAKIISSETGENLGMGEKGEICIKG 402

Query: 244 --VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
             VMLGY  NE+AT E +D +G+L TGD+ Y DEDGYF+I+DR+KELIK KG QV P
Sbjct: 403 PNVMLGYYNNEKATNEVIDKDGFLKTGDIGYVDEDGYFFIIDRSKELIKCKGFQVPP 459

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q54P78|4CL2_DICDI Probable 4-coumarate--CoA ligase 2 OS=Dictyostelium discoideum GN=4cl2 PE=3 SV=1

 Score =  183 bits (464), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/296 (37%), Positives = 158/296 (53%), Gaps = 44/296 (14%)

Query: 37  IFGFKQLVTSQPPDFQLPKIS-PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPD 95
           +  F QL+ +   D+ + +I    D A++P+SSGTTG+ KGV LSH+N   N  Q    +
Sbjct: 174 VMSFNQLINNNGKDYPIVRIDLKKDTAIIPFSSGTTGLFKGVCLSHHNLVSNTHQTQTVE 233

Query: 96  IVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYK 155
             N+        +TV+  LPFFHIYG    L +++  G  ++ +PKF    +++ + KYK
Sbjct: 234 TTNY-----KKNDTVMGQLPFFHIYGLMTYLILMVKQGHCVVILPKFEFVRFLDLIQKYK 288

Query: 156 PTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQG 215
             I F+VP + +  A  P V    L+S+R +  GAAP ++ + D  K++ + + + I+QG
Sbjct: 289 VAISFIVPPIAIMFAKSPIVDKFDLSSLRTLFSGAAPLSREVEDLIKERFKGK-LIIKQG 347

Query: 216 YGMTETSPCTLYTRFAIPEA--KLGSTGQL------------------------------ 243
           YG TE SP      F IP    K GS G L                              
Sbjct: 348 YGATELSPAC----FVIPSGLIKSGSAGILLPNQLVKIISPETGENLGMGEKGEICIKGP 403

Query: 244 -VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
            VMLGY  NE+AT E +D +G+  TGD+ Y DEDGY++IVDR+KELIK KG QV P
Sbjct: 404 NVMLGYYNNEKATNEVIDKDGFFKTGDIGYVDEDGYYFIVDRSKELIKCKGFQVPP 459

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q6ETN3|4CL3_ORYSJ Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa subsp. japonica GN=4CL3 PE=2 SV=1

 Score =  178 bits (451), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 119/377 (31%), Positives = 175/377 (46%), Gaps = 96/377 (25%)

Query: 40  FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNH 99
           F++++ ++  D     + P+D+  LPYSSGTTG+PKGV L+H +   ++ Q V  +  N 
Sbjct: 162 FREVLAAEELDAD-ADVHPDDVVALPYSSGTTGLPKGVMLTHRSLITSVAQQVDGENPNL 220

Query: 100 IPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTIL 159
             + D   + +L +LP FHIY  N +L   +  G  ++ + KF     ++ V K+  TI 
Sbjct: 221 YFSKD---DVILCLLPLFHIYSLNSVLLAGLRAGSTIVIMRKFDLGALVDLVRKHNITIA 277

Query: 160 FVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMT 219
             VP +++ +A  P VT E LASIR V  GAAP  K L D F  K+   +  + QGYGMT
Sbjct: 278 PFVPPIVVEIAKSPRVTAEDLASIRMVMSGAAPMGKDLQDAFMAKIP--NAVLGQGYGMT 335

Query: 220 ETSP----CTLYTR--FAIPEAKLGST----------------------------GQLVM 245
           E  P    C  + +  F +     G+                             G+ +M
Sbjct: 336 EAGPVLAMCLAFAKEPFKVKSGSCGTVVRNAELKIVDPDTGTSLGRNQSGEICIRGEQIM 395

Query: 246 LGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPYK----- 300
            GYL + EATK T+D +GWLHTGD+ + D+D   +IVDR KE+IK KG QV P +     
Sbjct: 396 KGYLNDPEATKNTIDEDGWLHTGDIGFVDDDDEIFIVDRLKEIIKYKGFQVPPAELEALL 455

Query: 301 ----------------KLAGGVK-----------------------------------FL 309
                            LAG V                                    F 
Sbjct: 456 ITHPEIKDAAVVSMKDDLAGEVPVAFIVRTEGSEITEDEIKKFVAKEVVFYKRINKVFFT 515

Query: 310 ETIPRNPAGKVLRNELK 326
           ++IP+NP+GK+LR +L+
Sbjct: 516 DSIPKNPSGKILRKDLR 532

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O24145|4CL1_TOBAC 4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1

 Score =  178 bits (451), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 110/293 (37%), Positives = 148/293 (50%), Gaps = 39/293 (13%)

Query: 40  FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNH 99
           F +L  S   +    KI P+D+  LPYSSGTTG+PKGV L+H     ++ Q V  +  N 
Sbjct: 167 FSELTQSDEHEIPEVKIQPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENAN- 225

Query: 100 IPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTIL 159
                 S++ ++ VLP FHIY  N IL   +  G  ++ + KF    ++E + KYK +I 
Sbjct: 226 --LYMHSEDVLMCVLPLFHIYSLNSILLCGLRVGAAILIMQKFDIAPFLELIQKYKVSIG 283

Query: 160 FVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMT 219
             VP ++L +A  P V    L+S+R V  GAAP  K L D  + K    +  + QGYGMT
Sbjct: 284 PFVPPIVLAIAKSPIVDSYDLSSVRTVMSGAAPLGKELEDAVRTKF--PNAKLGQGYGMT 341

Query: 220 ETSP----CTLYTR--FAIPEAKLGST----------------------------GQLVM 245
           E  P    C  + +  F I     G+                             G  +M
Sbjct: 342 EAGPVLAMCLAFAKEPFDIKSGACGTVVRNAEMKIVDPDTGCSLPRNQPGEICIRGDQIM 401

Query: 246 LGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
            GYL + EAT  T+D EGWLHTGD+ + DED   +IVDR KELIK KG QVAP
Sbjct: 402 KGYLNDPEATTRTIDKEGWLHTGDIGFIDEDDELFIVDRLKELIKYKGFQVAP 454

Nicotiana tabacum (taxid: 4097)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q9S725|4CL2_ARATH 4-coumarate--CoA ligase 2 OS=Arabidopsis thaliana GN=4CL2 PE=1 SV=2

 Score =  176 bits (445), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/313 (36%), Positives = 154/313 (49%), Gaps = 42/313 (13%)

Query: 23  GTIVVGGEHDK-SKNIFGFKQLVTSQPP--DFQLPKISPNDLAMLPYSSGTTGVPKGVKL 79
           G ++V  + D   +N   F +L  S+ P  D    KISP D+  LP+SSGTTG+PKGV L
Sbjct: 156 GVLIVTTDSDAIPENCLRFSELTQSEEPRVDSIPEKISPEDVVALPFSSGTTGLPKGVML 215

Query: 80  SHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITI 139
           +H     ++ Q V  +  N     D   + +L VLP FHIY  N I+   +  G  ++ +
Sbjct: 216 THKGLVTSVAQQVDGENPNLYFNRD---DVILCVLPMFHIYALNSIMLCSLRVGATILIM 272

Query: 140 PKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLID 199
           PKF     +E + + K T+  VVP ++L +A  P      L+S+R V  GAAP  K L D
Sbjct: 273 PKFEITLLLEQIQRCKVTVAMVVPPIVLAIAKSPETEKYDLSSVRMVKSGAAPLGKELED 332

Query: 200 KFKQKVQREDITIRQGYGMTETSP-------------------CTLYTRFA--------- 231
               K    +  + QGYGMTE  P                   C    R A         
Sbjct: 333 AISAKF--PNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKILDPDT 390

Query: 232 ---IPEAKLGST---GQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRT 285
              +P  K G     G  +M GYL +  AT  T+D +GWLHTGDV + D+D   +IVDR 
Sbjct: 391 GDSLPRNKPGEICIRGNQIMKGYLNDPLATASTIDKDGWLHTGDVGFIDDDDELFIVDRL 450

Query: 286 KELIKVKGNQVAP 298
           KELIK KG QVAP
Sbjct: 451 KELIKYKGFQVAP 463

Produces CoA thioesters of a variety of hydroxy- and methoxy-substituted cinnamic acids, which are used to synthesize several phenylpropanoid-derived compounds, including anthocyanins, flavonoids, isoflavonoids, coumarins, lignin, suberin and wall-bound phenolics.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P41636|4CL_PINTA 4-coumarate--CoA ligase OS=Pinus taeda GN=4CL PE=2 SV=1

 Score =  172 bits (437), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 107/294 (36%), Positives = 151/294 (51%), Gaps = 47/294 (15%)

Query: 44  VTSQPPDFQLP--KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV---HPDIVN 98
           V ++  + Q P  KI P+D+  LPYSSGTTG+PKGV L+H     ++ Q V   +P++  
Sbjct: 164 VLTEADETQCPAVKIHPDDVVALPYSSGTTGLPKGVMLTHKGLVSSVAQQVDGENPNLYF 223

Query: 99  HIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTI 158
           H      S + +L VLP FHIY  N +L   +  G   + + KF   T +E + KYK T+
Sbjct: 224 H------SDDVILCVLPLFHIYSLNSVLLCALRAGAATLIMQKFNLTTCLELIQKYKVTV 277

Query: 159 LFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGM 218
             +VP ++L +   P V+   ++S+R +  GAAP  K L D  +++  +      QGYGM
Sbjct: 278 APIVPPIVLDITKSPIVSQYDVSSVRIIMSGAAPLGKELEDALRERFPKA--IFGQGYGM 335

Query: 219 TETSP-------------------CTLYTRFA------------IPEAKLGST---GQLV 244
           TE  P                   C    R A            +P  + G     G  +
Sbjct: 336 TEAGPVLAMNLAFAKNPFPVKSGSCGTVVRNAQIKILDTETGESLPHNQAGEICIRGPEI 395

Query: 245 MLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           M GY+ + E+T  T+D EGWLHTGDV Y D+D   +IVDR KE+IK KG QVAP
Sbjct: 396 MKGYINDPESTAATIDEEGWLHTGDVEYIDDDEEIFIVDRVKEIIKYKGFQVAP 449

Pinus taeda (taxid: 3352)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q42982|4CL2_ORYSJ Probable 4-coumarate--CoA ligase 2 OS=Oryza sativa subsp. japonica GN=4CL2 PE=2 SV=2

 Score =  171 bits (433), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 107/281 (38%), Positives = 144/281 (51%), Gaps = 43/281 (15%)

Query: 56  ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVN-HIPTSDTSQETVLSVL 114
           ISP+D   LP+SSGTTG+PKGV L+H +    + Q V  +  N H+   D +    L VL
Sbjct: 208 ISPDDPVALPFSSGTTGLPKGVVLTHRSVVSGVAQQVDGENPNLHMGAGDVA----LCVL 263

Query: 115 PFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPA 174
           P FHI+  N +L   +  G  +  +P+F     +  + +++ T+  VVP L+L LA +P 
Sbjct: 264 PLFHIFSLNSVLLCAVRAGAAVALMPRFEMGAMLGAIERWRVTVAAVVPPLVLALAKNPF 323

Query: 175 VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP----CTLYTRF 230
           V    L+SIR V  GAAP  K L D  + ++ +      QGYGMTE  P    C  + + 
Sbjct: 324 VERHDLSSIRIVLSGAAPLGKELEDALRARLPQA--IFGQGYGMTEAGPVLSMCPAFAKE 381

Query: 231 AIPEAKLGSTGQLV-------------------------------MLGYLKNEEATKETV 259
             P AK GS G +V                               M GYL + EAT  T+
Sbjct: 382 PTP-AKSGSCGTVVRNAELKVVDPDTGFSLGRNLPGEICIRGPQIMKGYLNDPEATAATI 440

Query: 260 DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPYK 300
           D EGWLHTGD+ Y D+D   +IVDR KELIK KG QV P +
Sbjct: 441 DVEGWLHTGDIGYVDDDDEVFIVDRVKELIKFKGFQVPPAE 481

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q67W82|4CL4_ORYSJ Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa subsp. japonica GN=4CL4 PE=2 SV=1

 Score =  171 bits (432), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/312 (34%), Positives = 155/312 (49%), Gaps = 40/312 (12%)

Query: 22  RGTIVVGGEHDKSKNI-FGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLS 80
           RG  VV  + D    + FG   L  S  P     ++ P+D+  LPYSSGTTG+PKGV L+
Sbjct: 152 RGIPVVAVDGDFDGCVGFGEAMLDASIEPLDADEEVHPDDVVALPYSSGTTGLPKGVMLT 211

Query: 81  HNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP 140
           H +   ++ Q V  +  N        ++ VL +LP FHIY  N +L   +  G  ++ + 
Sbjct: 212 HRSLVTSVAQQVDGENPN---LYFRREDVVLCLLPLFHIYSLNSVLLAGLRAGSAIVIMR 268

Query: 141 KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDK 200
           KF     ++   ++  T+   VP +++ +A  P VT + LASIR V  GAAP  K L D 
Sbjct: 269 KFDLGALVDLTRRHGVTVAPFVPPIVVEIAKSPRVTADDLASIRMVMSGAAPMGKDLQDA 328

Query: 201 FKQKVQREDITIRQGYGMTETSP----CTLYTR--FAIPEAKLGST-------------- 240
           F  K+   +  + QGYGMTE  P    C  + +  F +     G+               
Sbjct: 329 FMAKIP--NAVLGQGYGMTEAGPVLAMCLAFAKEPFEVKSGSCGTVVRNAELKIVDPDTG 386

Query: 241 --------------GQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTK 286
                         G+ +M GYL + E+TK T+D  GWLHTGD+ Y D+D   +IVDR K
Sbjct: 387 ATLGRNQSGEICIRGEQIMKGYLNDPESTKNTIDKGGWLHTGDIGYVDDDDEIFIVDRLK 446

Query: 287 ELIKVKGNQVAP 298
           E+IK KG QV P
Sbjct: 447 EIIKYKGFQVPP 458

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q6ZAC1|4CL5_ORYSJ Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica GN=4CL5 PE=2 SV=1

 Score =  167 bits (422), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/322 (34%), Positives = 158/322 (49%), Gaps = 45/322 (13%)

Query: 16  ATLPNFRGTIVV--GGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGV 73
           A +    G  VV  GG  ++  +  G      S  P+  +     ND   LPYSSGTTG+
Sbjct: 134 AKVSGLAGVTVVATGGGAERCASFAGLAAADGSALPEVAID--VANDAVALPYSSGTTGL 191

Query: 74  PKGVKLSHNNCAVNLEQCVHPDIVN-HIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMY 132
           PKGV LSH     ++ Q V  +  N H+   D     VL VLP FH+Y  + IL   M  
Sbjct: 192 PKGVMLSHRGLVTSVAQLVDGENPNLHLREDDV----VLCVLPMFHVYSLHSILLCGMRA 247

Query: 133 GMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAP 192
           G  ++ + +F     ++ V ++  TI  +VP +++ +A   A+    L+SIR V  GAAP
Sbjct: 248 GAAIVVMKRFDTVKMLQLVERHGVTIAPLVPPIVVEMAKSDALDRHDLSSIRMVISGAAP 307

Query: 193 ATKSLIDKFKQKVQREDITIRQGYGMTETSP----CTLYTR------------------- 229
             K L D    K+   +  + QGYGMTE  P    C  + +                   
Sbjct: 308 MGKELQDIVHAKL--PNAVLGQGYGMTEAGPVLSMCMAFAKEPTPVKSGACGTVVRNAEL 365

Query: 230 --------FAIPEAKLGST---GQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGY 278
                    ++P  + G     G+ +M GYL N EAT++T+D +GWLHTGD+ + D+D  
Sbjct: 366 KIVDPDTGLSLPRNQPGEICIRGKQIMKGYLNNPEATEKTIDKDGWLHTGDIGFVDDDDE 425

Query: 279 FYIVDRTKELIKVKGNQVAPYK 300
            +IVDR KELIK KG QVAP +
Sbjct: 426 IFIVDRLKELIKYKGFQVAPAE 447

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
328708451	611	PREDICTED: 4-coumarate--CoA ligase 3-lik	0.877	0.479	0.618	1e-110
91081615	579	PREDICTED: similar to AMP dependent coa	0.973	0.561	0.479	7e-97
156555564	568	PREDICTED: probable 4-coumarate--CoA lig	0.886	0.521	0.531	2e-94
270005091	507	hypothetical protein TcasGA2_TC007099 [T	0.877	0.577	0.542	7e-92
332376418	377	unknown [Dendroctonus ponderosae]	0.832	0.737	0.483	5e-89
357605939	586	putative AMP dependent coa ligase [Danau	0.979	0.558	0.448	3e-88
347967975	589	AGAP002503-PA [Anopheles gambiae str. PE	0.886	0.502	0.487	2e-81
157114710	350	AMP dependent coa ligase [Aedes aegypti]	0.673	0.642	0.534	6e-70
345483267	563	PREDICTED: 4-coumarate--CoA ligase 2-lik	0.853	0.506	0.428	2e-56
321463518	488	hypothetical protein DAPPUDRAFT_307209 [	0.874	0.598	0.396	4e-56

>gi|328708451|ref|XP_001951162.2| PREDICTED: 4-coumarate--CoA ligase 3-like [Acyrthosiphon pisum]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/328 (61%), Positives = 246/328 (75%), Gaps = 35/328 (10%)

Query: 4   IPQLLEVGTKIGATLPNFRGTIVVGGEH--DKSKNIFGFKQLVTSQPPDFQLPKISPNDL 61
           I  LL V  ++  +L ++ GTIV GGE   ++   ++ FK LV+ Q P  +LPK   +++
Sbjct: 189 ISLLLPVIKEVSPSLKDYAGTIVFGGEEVANEKARVYDFKTLVSGQSPG-ELPKSFADEV 247

Query: 62  AMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYG 121
           A+LPYSSGTTG+PKGV L+H NCA+NLEQC++ DI+++ PT+DT QE VLSVLPFFHIYG
Sbjct: 248 ALLPYSSGTTGLPKGVMLTHRNCAINLEQCINKDIISYEPTTDTYQERVLSVLPFFHIYG 307

Query: 122 FNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLA 181
           FNGILN V+ +G+HMITIPKFTPE+YIECV+KYKPT LFVVPSLLLFLASHP+V  EHL+
Sbjct: 308 FNGILNGVLSHGLHMITIPKFTPESYIECVLKYKPTFLFVVPSLLLFLASHPSVKAEHLS 367

Query: 182 SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTG 241
           SI+E+TCGAAPA+K LID F  K Q+ DI IRQGYGMTE+SP +LYTR ++PE K GSTG
Sbjct: 368 SIKEITCGAAPASKGLIDNFLLKAQK-DIRIRQGYGMTESSPVSLYTRVSLPENKTGSTG 426

Query: 242 QL-------------------------------VMLGYLKNEEATKETVDSEGWLHTGDV 270
           QL                               VM GYL NE+ATKETVD +GWLHTGDV
Sbjct: 427 QLVLSTQARVVSLTDGSDLGPHKSGELLIRGPQVMAGYLNNEKATKETVDEDGWLHTGDV 486

Query: 271 AYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           AYYDED YF+IVDRTKELIKVKGNQV+P
Sbjct: 487 AYYDEDEYFFIVDRTKELIKVKGNQVSP 514

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91081615|ref|XP_966640.1| PREDICTED: similar to AMP dependent coa ligase [Tribolium castaneum]

 Score =  360 bits (923), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 199/415 (47%), Positives = 252/415 (60%), Gaps = 90/415 (21%)

Query: 1   MCNIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPND 60
           +  +PQLLEV   I   L  +R TI +GGE D SKN+ G + ++ +   + +LP I+P +
Sbjct: 165 IVTVPQLLEVALTIAPQLQEYRTTICIGGEDDPSKNVNGLQSMLMAGH-EAELPGINPRE 223

Query: 61  LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIY 120
           +A+LPYSSGTTG+PKGV LSH N   NL Q  HP + + + T D  + T+L+VLPFFHIY
Sbjct: 224 IAILPYSSGTTGLPKGVMLSHYNLVANLVQGEHPALED-LETKDGKRHTMLTVLPFFHIY 282

Query: 121 GFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHL 180
           GFNGILN+ +  G H+ITIP+FTPE Y++ +V+YKP+ +FVVPSLLLFLASHPAVT EHL
Sbjct: 283 GFNGILNLCLKNGAHIITIPRFTPEDYLKTLVEYKPSFIFVVPSLLLFLASHPAVTKEHL 342

Query: 181 ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGS- 239
           +SI  V  GAAP T+ L+ KF+QKV R+DI IRQGYGMTE+SP T       P +K+ + 
Sbjct: 343 SSIEAVQSGAAPLTEGLLQKFRQKVGRDDILIRQGYGMTESSPVTFCMPKLTPPSKIATI 402

Query: 240 ------------------------TGQL------VMLGYLKNEEATKETVDSEGWLHTGD 269
                                   +G+L      +M+GYL NE+AT ETVD EGWLHTGD
Sbjct: 403 GLPYPGTEAKVISLSNGEPQGTHKSGELLVRGPQIMMGYLNNEQATAETVDEEGWLHTGD 462

Query: 270 VAYYDEDGYFYIVDRTKELIKVKGNQVAPYK---------------------KLAGGV-- 306
           VAYYDED YFYIVDR KELIKVKGNQV+P +                      LAG V  
Sbjct: 463 VAYYDEDFYFYIVDRCKELIKVKGNQVSPTELENLLLEMPGVADCAVVGIPDALAGEVPR 522

Query: 307 ----------------------------------KFLETIPRNPAGKVLRNELKV 327
                                             KF+E+IPRNP+GK+LRNELK+
Sbjct: 523 AFVVRQPGSSLSEDDILLYINPKVAHYKKIAGGVKFVESIPRNPSGKILRNELKI 577

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156555564|ref|XP_001604694.1| PREDICTED: probable 4-coumarate--CoA ligase 3-like [Nasonia vitripennis]

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 176/331 (53%), Positives = 221/331 (66%), Gaps = 35/331 (10%)

Query: 1   MCNIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQL-VTSQPPDFQLPKISPN 59
           +  IPQL+E    +   L N+  TI +GG+    K I G + L + SQ    QLP++ P+
Sbjct: 148 IVTIPQLMETAQAVANNLENYDCTINIGGKAVPDKKILGLESLLIPSQ--SIQLPEVKPD 205

Query: 60  DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHI 119
           DLA+LPYSSGTTGVPKGV L+H N  +N+ Q +HP IV    T+D  QETVL+VLPFFHI
Sbjct: 206 DLAVLPYSSGTTGVPKGVMLTHRNLVMNISQLMHPGIVKVNETTDDFQETVLTVLPFFHI 265

Query: 120 YGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEH 179
           YGFN ILN   + G H++T+PKFTP+ Y+EC++KYKP++LFVVPSLLLFL +HP +T +H
Sbjct: 266 YGFNMILNYTTLVGTHIVTMPKFTPQDYVECLIKYKPSVLFVVPSLLLFLVTHPEITAQH 325

Query: 180 LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGS 239
           L+S+ ++ CGAAP  K LID F QK+ R+D  I QGYGMTETSP    T + +P  K GS
Sbjct: 326 LSSVTQIFCGAAPMKKGLIDTFLQKINRQDCHISQGYGMTETSPGITLTPYTMPYEKSGS 385

Query: 240 TGQL--------------------------------VMLGYLKNEEATKETVDSEGWLHT 267
            G+L                                VM GYL N++AT E +DS+GWLHT
Sbjct: 386 CGRLLPSTTARVVDPATNEDVSGPNQPGELLVKGPQVMKGYLDNQKATDEVIDSDGWLHT 445

Query: 268 GDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           GDV YYDED YFYIVDRTKELIKVKGNQV+P
Sbjct: 446 GDVVYYDEDEYFYIVDRTKELIKVKGNQVSP 476

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005091|gb|EFA01539.1| hypothetical protein TcasGA2_TC007099 [Tribolium castaneum]

 Score =  343 bits (880), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 177/326 (54%), Positives = 223/326 (68%), Gaps = 33/326 (10%)

Query: 1   MCNIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPND 60
           +  +PQLLEV   I   L  +R TI +GGE D SKN+ G + ++ +   + +LP I+P +
Sbjct: 165 IVTVPQLLEVALTIAPQLQEYRTTICIGGEDDPSKNVNGLQSMLMAGH-EAELPGINPRE 223

Query: 61  LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIY 120
           +A+LPYSSGTTG+PKGV LSH N   NL Q  HP + + + T D  + T+L+VLPFFHIY
Sbjct: 224 IAILPYSSGTTGLPKGVMLSHYNLVANLVQGEHPALED-LETKDGKRHTMLTVLPFFHIY 282

Query: 121 GFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHL 180
           GFNGILN+ +  G H+ITIP+FTPE Y++ +V+YKP+ +FVVPSLLLFLASHPAVT EHL
Sbjct: 283 GFNGILNLCLKNGAHIITIPRFTPEDYLKTLVEYKPSFIFVVPSLLLFLASHPAVTKEHL 342

Query: 181 ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGS- 239
           +SI  V  GAAP T+ L+ KF+QKV R+DI IRQGYGMTE+SP T       P +K+ + 
Sbjct: 343 SSIEAVQSGAAPLTEGLLQKFRQKVGRDDILIRQGYGMTESSPVTFCMPKLTPPSKIATI 402

Query: 240 ------------------------TGQL------VMLGYLKNEEATKETVDSEGWLHTGD 269
                                   +G+L      +M+GYL NE+AT ETVD EGWLHTGD
Sbjct: 403 GLPYPGTEAKVISLSNGEPQGTHKSGELLVRGPQIMMGYLNNEQATAETVDEEGWLHTGD 462

Query: 270 VAYYDEDGYFYIVDRTKELIKVKGNQ 295
           VAYYDED YFYIVDR KELIKVKGNQ
Sbjct: 463 VAYYDEDFYFYIVDRCKELIKVKGNQ 488

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376418|gb|AEE63349.1| unknown [Dendroctonus ponderosae]

 Score =  333 bits (855), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 177/366 (48%), Positives = 219/366 (59%), Gaps = 88/366 (24%)

Query: 50  DFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQET 109
           + +LP+I P+ LA+LPYSSGTTG+PKGV LSH N   N+ Q  HP ++ +I T    +  
Sbjct: 9   EAELPEIHPDQLALLPYSSGTTGLPKGVMLSHRNLVANMIQGDHPALIGNITTKSGEKHK 68

Query: 110 VLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFL 169
            L+VLPFFHIYGFNGI+N+ +  G H+ITIP+FTPE Y++ +  YKPT LFVVPSLLLFL
Sbjct: 69  ALTVLPFFHIYGFNGIMNICLRLGSHIITIPRFTPEDYLKALETYKPTYLFVVPSLLLFL 128

Query: 170 ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTR 229
           ASHP VT EHL+SI E+T GAAP T+ L+ KF+QK+   D+ IRQGYGMTETSP T    
Sbjct: 129 ASHPNVTKEHLSSIEEITSGAAPLTEGLLQKFRQKLDNPDVMIRQGYGMTETSPVTFIMP 188

Query: 230 FAIPEAKLGSTGQL-------------------------------VMLGYLKNEEATKET 258
              P +K+G+ G L                               VM+GYLKNE+AT ET
Sbjct: 189 KLTPPSKIGTIGILYPGTEAKVISLVTGESMGTHQTGELLVRGPQVMMGYLKNEKATAET 248

Query: 259 VDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPYK------------------ 300
           +D +GWLHTGDV YYDED YFYIVDR KELIKVKGNQV+P +                  
Sbjct: 249 IDEDGWLHTGDVVYYDEDHYFYIVDRCKELIKVKGNQVSPTELENLILEIEGIIDAAVVG 308

Query: 301 ---KLAG------------------------------------GVKFLETIPRNPAGKVL 321
              +LAG                                    GVKF++ IPRNP+GK+L
Sbjct: 309 VPDELAGEVPRAYVVAKPGENINEEDIKKFISSKVTHYKKLAGGVKFIQAIPRNPSGKIL 368

Query: 322 RNELKV 327
           RNELK+
Sbjct: 369 RNELKI 374

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357605939|gb|EHJ64841.1| putative AMP dependent coa ligase [Danaus plexippus]

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 188/419 (44%), Positives = 242/419 (57%), Gaps = 92/419 (21%)

Query: 1   MCNIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPND 60
           +  I   + V  K+   L +++GTI VGG+ DK+K I+G K L+ +      LP ++ +D
Sbjct: 167 IATIEMFMPVAEKVSKMLKDYKGTIWVGGDDDKAKGIYGLKSLLMADH-KADLPTLNCDD 225

Query: 61  LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIY 120
           + ++PYSSGTTG+PKGV L+H N   NL+Q   P ++ +        + +L+V PFFHIY
Sbjct: 226 VCLVPYSSGTTGLPKGVMLTHKNLVCNLKQVQVPKMMKY-EGEKGKGDVILTVPPFFHIY 284

Query: 121 GFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHL 180
           GFNGILN  ++ G H+++IPKFTPE YI C+V+Y+PT LFVVPSLL FLA+HP+V  EHL
Sbjct: 285 GFNGILNYNLILGYHLVSIPKFTPEDYINCLVEYQPTTLFVVPSLLAFLATHPSVKKEHL 344

Query: 181 ASIREVTCGAAPATKSLIDKFKQKVQ--REDITIRQGYGMTETSPCTLYTRFAIPEAKLG 238
            S+  +  GAAP T S+++KF  K +  ++ I + QGYGMTE+SP TL T ++ P +K+G
Sbjct: 345 QSVETIMVGAAPTTDSMLEKFLIKCEKSKDQIKLLQGYGMTESSPVTLMTPYSYPYSKVG 404

Query: 239 STGQL-------------------------------VMLGYLKNEEATKETVDSEGWLHT 267
           S GQL                               VM GY  NE+AT ETVDSEGWLHT
Sbjct: 405 SVGQLVPSTQARVTSLTDGTPLGPHHSGELLLRGPQVMKGYWNNEKATAETVDSEGWLHT 464

Query: 268 GDVAYYDEDGYFYIVDRTKELIKVKGNQVAPYK---------------------KLAGGV 306
           GDVAYYDEDGYFYIVDRTKELIKVKGNQV+P +                      LAG V
Sbjct: 465 GDVAYYDEDGYFYIVDRTKELIKVKGNQVSPTEIESIIMEIPEIADVAVVGIPDALAGEV 524

Query: 307 -----------------------------KFLE-------TIPRNPAGKVLRNELKVFG 329
                                        K LE        IPRN AGK+LRNELKV G
Sbjct: 525 PRAFVVLKPGSKLTEKNIYDVVAEKLTKYKHLEGGVVFVEAIPRNVAGKILRNELKVLG 583

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347967975|ref|XP_312436.5| AGAP002503-PA [Anopheles gambiae str. PEST] gi|333468218|gb|EAA44923.5| AGAP002503-PA [Anopheles gambiae str. PEST]

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 161/330 (48%), Positives = 216/330 (65%), Gaps = 34/330 (10%)

Query: 1   MCNIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPND 60
           +  +P LL V     + + +++GTI +GG+HD  KNI+GF+Q +       +LP+I  + 
Sbjct: 169 IVTVPMLLPVAEMFKSKMKHYKGTICIGGKHDLDKNIYGFEQFLKENHRS-ELPEIDCHK 227

Query: 61  LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHI-PTSDTSQETVLSVLPFFHI 119
            A+LPYSSGTTG+PKGV+LSH N   NL Q  HP I  +  P     +ET+L++ PFFHI
Sbjct: 228 TAILPYSSGTTGLPKGVELSHYNLVANLAQGSHPAISKYYQPEYLEKKETILTIPPFFHI 287

Query: 120 YGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEH 179
           YG NGIL++V+    H+++IP+F PE YI+C+ +++P  LFVVPSLLLFLA+HP VTP+ 
Sbjct: 288 YGLNGILHMVLKSKNHVVSIPRFIPEDYIQCLAEFRPQFLFVVPSLLLFLATHPKVTPDL 347

Query: 180 LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGS 239
           L+S+  V  GAAPA+  L +KFK KV R DI I QGYGMTE+SP TL T      +K+G+
Sbjct: 348 LSSVDSVLVGAAPASLQLQEKFKNKVGR-DIDIAQGYGMTESSPVTLCTPHRYDLSKVGT 406

Query: 240 TGQL-------------------------------VMLGYLKNEEATKETVDSEGWLHTG 268
            GQL                               +M GYL NE AT+ET+  +G+L TG
Sbjct: 407 CGQLYPNTEAKIVSLSDGSNLGPHQTGELYLRGPQIMKGYLNNETATRETLVEDGYLRTG 466

Query: 269 DVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           DVAYYD++G+F+IVDRTKELIKVKGNQV+P
Sbjct: 467 DVAYYDKEGFFFIVDRTKELIKVKGNQVSP 496

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157114710|ref|XP_001652383.1| AMP dependent coa ligase [Aedes aegypti] gi|108883536|gb|EAT47761.1| AAEL001128-PA [Aedes aegypti]

 Score =  270 bits (690), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 138/258 (53%), Positives = 174/258 (67%), Gaps = 33/258 (12%)

Query: 73  VPKGVKLSHNNCAVNLEQCVHPDIVNH-IPTSDTSQETVLSVLPFFHIYGFNGILNVVMM 131
           +PKGV+LSHNN   NL Q  HP++  +  P      ET+L++ PFFHIYGFNGILN  + 
Sbjct: 1   MPKGVELSHNNLVANLAQGSHPEMNKYNRPEFAGYTETILTIPPFFHIYGFNGILNSCLK 60

Query: 132 YGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAA 191
              H+++IP+F PE YI+C+V+++P  LFVVPSL+LFLA+HP VT +HL+S+  V  GAA
Sbjct: 61  SRNHLVSIPRFIPEDYIQCLVEFRPKFLFVVPSLMLFLATHPKVTEDHLSSVDAVLVGAA 120

Query: 192 PATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQL-------- 243
            A   L DKFKQK  + D+ I QGYGMTE+SP TL T +    +K+G+ GQL        
Sbjct: 121 AAPLQLQDKFKQKCGK-DVDITQGYGMTESSPVTLCTPYKYDLSKVGTCGQLYPNTQAKV 179

Query: 244 -----------------------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFY 280
                                  VM GYL NE+AT+ETVDS+GWLHTGDVAYYD+DGYF+
Sbjct: 180 VSLTDGSNLGAHQPGELYIRGPQVMKGYLNNEQATRETVDSDGWLHTGDVAYYDQDGYFF 239

Query: 281 IVDRTKELIKVKGNQVAP 298
           IVDRTKELIKVKGNQV+P
Sbjct: 240 IVDRTKELIKVKGNQVSP 257

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483267|ref|XP_001603179.2| PREDICTED: 4-coumarate--CoA ligase 2-like [Nasonia vitripennis]

 Score =  225 bits (573), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/306 (42%), Positives = 188/306 (61%), Gaps = 21/306 (6%)

Query: 10  VGTKIGATLPNFRGTIVVGGEHDKS--KNIFGFKQLVTSQPPDFQLP--KISPNDLAMLP 65
           V T +  ++P   G ++V  +H K     +  F+ L+T       LP  + S +D+A+LP
Sbjct: 173 VITAVNKSIPG--GRVIVVNDHTKPIPDGVIPFEDLITKGKTLAPLPDRQWSLDDVAILP 230

Query: 66  YSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNH--IPTSDTSQETVLSVLPFFHIYGFN 123
           YSSGTTG+PKGV L+H N   N+E  V   +  H  I    +SQE V  VLP +HIYG +
Sbjct: 231 YSSGTTGLPKGVMLTHRNIVSNVEM-VKNTVDKHMMIKADGSSQEIVPVVLPMYHIYGMS 289

Query: 124 GILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASI 183
            I+   +  G  +IT+PKFTPE+YI+ + + K ++L +VP ++LFL++   VT +HL ++
Sbjct: 290 TIMLSRLSIGSRLITLPKFTPESYIKVLDENKVSVLMLVPPIVLFLSASKHVTRKHLENV 349

Query: 184 REVTCGAAPATKSLIDKFKQK--VQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGS-- 239
             +T GAAP +K+ +DKF  K  V R      QGYG+TE+SP  L+ +  +  + +G   
Sbjct: 350 TSITSGAAPLSKTDVDKFYDKFNVDRSKTQFAQGYGLTESSPVALFEKSGVKFSSIGKPV 409

Query: 240 -------TGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
                   G  +M GYLKN++AT+ET+  +GWL TGD+AYYD+D  FYI DR KELIKVK
Sbjct: 410 CGSEARLRGPHIMKGYLKNQKATEETI-VDGWLLTGDIAYYDDDLDFYITDRLKELIKVK 468

Query: 293 GNQVAP 298
           G QVAP
Sbjct: 469 GYQVAP 474

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321463518|gb|EFX74533.1| hypothetical protein DAPPUDRAFT_307209 [Daphnia pulex]

 Score =  224 bits (572), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 132/333 (39%), Positives = 189/333 (56%), Gaps = 41/333 (12%)

Query: 1   MCNIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQL----PKI 56
           +  IPQ+ +   ++ +  P+ R  IVVGG  +      GF  L+        L     ++
Sbjct: 69  IVTIPQMADTIREVASLCPSIRQLIVVGGPQE------GFVSLMEMFQDSGDLFDENIEL 122

Query: 57  SP-NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTS-QETVLSVL 114
            P +D+ +LPYSSGTTG+PKGV L+H+N   N++Q +HP     IPT+  S QE  + VL
Sbjct: 123 DPFDDMFVLPYSSGTTGLPKGVMLTHSNICANIQQIIHPGTARVIPTTSNSFQEVYICVL 182

Query: 115 PFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPA 174
           PFFHIYG  G +   + +G  ++T+P+F  E+++ C+ ++ PT+L +VP L+ FL   P 
Sbjct: 183 PFFHIYGMVGSMLTGLDHGAKLVTLPRFESESFLNCLYQHHPTMLQLVPPLVSFLGHRPD 242

Query: 175 VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLY------- 227
           +  E    +  V CGAAP   +  +K   ++ R DI +++GYGMTE+SP T         
Sbjct: 243 LKLEAFHRLHTVFCGAAPLGPAAANKLVDRLGRRDILMQEGYGMTESSPVTHMSPIINNE 302

Query: 228 ----------TRFAIPEAKLGST------------GQLVMLGYLKNEEATKETVDSEGWL 265
                     TR  I +   G +            G  VM GY KNE+AT+ET+DS GWL
Sbjct: 303 IGSFGEPVSRTRVKIMDLNTGESLGPGQEGEMCVFGPQVMKGYYKNEKATEETIDSAGWL 362

Query: 266 HTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           HTGD+AYY+E   F+IVDR KELIKVKG QV+P
Sbjct: 363 HTGDIAYYNEQNQFFIVDRLKELIKVKGLQVSP 395

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
UNIPROTKB|Q5LVA1	535	fadD "4-coumarate:CoA ligase"	0.661	0.413	0.346	8.3e-55
TIGR_CMR|SPO_0801	535	SPO_0801 "4-coumarate:CoA liga	0.661	0.413	0.346	8.3e-55
FB|FBgn0027601	597	pdgy "pudgy" [Drosophila melan	0.670	0.375	0.348	1.2e-46
WB|WBGene00008669	544	acs-14 [Caenorhabditis elegans	0.643	0.395	0.368	1.8e-46
FB|FBgn0039156	544	CG6178 [Drosophila melanogaste	0.652	0.400	0.329	6.6e-45
TAIR|locus:2094716	556	4CL2 "4-coumarate:CoA ligase 2	0.667	0.401	0.354	1.9e-44
TAIR|locus:2094771	570	4CL5 "4-coumarate:CoA ligase 5	0.616	0.361	0.319	3.7e-42
TAIR|locus:2017602	561	4CL1 "4-coumarate:CoA ligase 1	0.571	0.340	0.371	1.9e-41
DICTYBASE|DDB_G0284831	551	4cl1 "4-coumarate-CoA ligase"	0.730	0.442	0.340	1.4e-39
TIGR_CMR|CHY_0437	556	CHY_0437 "long-chain-fatty-aci	0.550	0.330	0.36	3.3e-39

UNIPROTKB|Q5LVA1 fadD "4-coumarate:CoA ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 350 (128.3 bits), Expect = 8.3e-55, Sum P(3) = 8.3e-55
 Identities = 86/248 (34%), Positives = 133/248 (53%)

Query:     6 QLLEVGTKIGATLPNF--------RGT----IVVGGEHDKSKNIFGFKQLVTSQPPDFQL 53
             QL + G ++  T+P F         GT    IVV G  D  +       L+   P + Q 
Sbjct:   123 QLNDAGAQVLVTIPAFLDTARAAIEGTGVDRIVVVG--DAPEGTLALSDLM-GPPLEHQA 179

Query:    54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSV 113
             P      + +LPYSSGTTG+PKGV L+H N  VN++Q + P  +N  P   T+     + 
Sbjct:   180 PVDVAEHVVVLPYSSGTTGMPKGVMLTHRNLVVNIDQTLLPADLN--PGEMTT-----AF 232

Query:   114 LPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHP 173
             LPFFHIYG   ++N+ +  G  ++T+P+F  E Y++CV++Y+   L++VP + L LA HP
Sbjct:   233 LPFFHIYGLQVLMNIYLTAGGGLVTLPRFDLEQYLDCVIRYRTPRLWIVPPVALALAKHP 292

Query:   174 AVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP 233
              V    L+ + +V C AAP  + + +   +++      + QGYGMTE SP +  +     
Sbjct:   293 VVANYDLSCVEQVFCAAAPLGRDVAEGLGERINAR---VNQGYGMTELSPVSHVSPHG-- 347

Query:   234 EAKLGSTG 241
             E K G++G
Sbjct:   348 EGKPGASG 355

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

TIGR_CMR|SPO_0801 SPO_0801 "4-coumarate:CoA ligase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 350 (128.3 bits), Expect = 8.3e-55, Sum P(3) = 8.3e-55
 Identities = 86/248 (34%), Positives = 133/248 (53%)

Query:     6 QLLEVGTKIGATLPNF--------RGT----IVVGGEHDKSKNIFGFKQLVTSQPPDFQL 53
             QL + G ++  T+P F         GT    IVV G  D  +       L+   P + Q 
Sbjct:   123 QLNDAGAQVLVTIPAFLDTARAAIEGTGVDRIVVVG--DAPEGTLALSDLM-GPPLEHQA 179

Query:    54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSV 113
             P      + +LPYSSGTTG+PKGV L+H N  VN++Q + P  +N  P   T+     + 
Sbjct:   180 PVDVAEHVVVLPYSSGTTGMPKGVMLTHRNLVVNIDQTLLPADLN--PGEMTT-----AF 232

Query:   114 LPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHP 173
             LPFFHIYG   ++N+ +  G  ++T+P+F  E Y++CV++Y+   L++VP + L LA HP
Sbjct:   233 LPFFHIYGLQVLMNIYLTAGGGLVTLPRFDLEQYLDCVIRYRTPRLWIVPPVALALAKHP 292

Query:   174 AVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP 233
              V    L+ + +V C AAP  + + +   +++      + QGYGMTE SP +  +     
Sbjct:   293 VVANYDLSCVEQVFCAAAPLGRDVAEGLGERINAR---VNQGYGMTELSPVSHVSPHG-- 347

Query:   234 EAKLGSTG 241
             E K G++G
Sbjct:   348 EGKPGASG 355

GO:0009698 "phenylpropanoid metabolic process" evidence=ISS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=ISS

FB|FBgn0027601 pdgy "pudgy" [Drosophila melanogaster (taxid:7227)]

 Score = 331 (121.6 bits), Expect = 1.2e-46, Sum P(2) = 1.2e-46
 Identities = 85/244 (34%), Positives = 125/244 (51%)

Query:     7 LLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQP---PDFQLPK-ISPNDLA 62
             L +    +G  +P     +    E    +    F +L ++Q     D + PK  S +D+ 
Sbjct:   189 LSQASKLVGRQIPI--AVVRTSAEEALPEGAIDFSELTSTQNVRYEDLKAPKEASADDMV 246

Query:    63 MLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTS-QETVLSVLPFFHIYG 121
              LP+SSGTTG+PKGV LSHNN   N EQ     +   +P      Q T+  VLPFFHIYG
Sbjct:   247 FLPFSSGTTGLPKGVMLSHNNITSNCEQ-----VQASLPLDLMGPQNTLPGVLPFFHIYG 301

Query:   122 FNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLA 181
                ++   +  G  + T+P F P+ ++  + KY+ +IL +VP + LF+ +HP +T E   
Sbjct:   302 LTVVMLSKLGQGCRLATMPCFKPDDFMRSLDKYQGSILNLVPPIALFMINHPKLTQETAP 361

Query:   182 SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAK--LGS 239
              ++ V  GAAP  +  +++F  K    +   +QGYGMTE SP  L T    PE      S
Sbjct:   362 HLKVVMSGAAPIGQHDVERFLNKFP--NTVFKQGYGMTEASPVVLLT----PEGNKVYAS 415

Query:   240 TGQL 243
             TG L
Sbjct:   416 TGVL 419

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0046627 "negative regulation of insulin receptor signaling pathway" evidence=IDA

GO:0071616 "acyl-CoA biosynthetic process" evidence=IDA

GO:0009062 "fatty acid catabolic process" evidence=IDA

GO:0019433 "triglyceride catabolic process" evidence=IDA

WB|WBGene00008669 acs-14 [Caenorhabditis elegans (taxid:6239)]

 Score = 328 (120.5 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
 Identities = 88/239 (36%), Positives = 129/239 (53%)

Query:    19 PNFRGTIVVGGEHDKS--KNIFGFKQLVTSQPPDFQLPKIS---PNDLAMLPYSSGTTGV 73
             PN +  IV+      S    +  + ++V++  P   LP++     NDL +LPYSSGTTG 
Sbjct:   140 PNIQKIIVIPKPVGSSLPAGVVSWNEVVST--PVTALPQVPIDVHNDLLVLPYSSGTTGP 197

Query:    74 PKGVKLSHNNCAVNLEQCVHPDIVNHI-----PTSDTSQETVLSVLPFFHIYGFNGILNV 128
             PKGV LSH N    +   +  D  +HI     P  D   E  L  LPF+H+YGF G+LN 
Sbjct:   198 PKGVMLSHYNFTSMISMYLAID-KSHILDVLDPNWDCYNEKALLFLPFYHVYGF-GLLNH 255

Query:   129 VMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTC 188
              ++ GM  I +  F P  ++  V  YK   L +VP +++FLA HP      L+S++ +  
Sbjct:   256 CLLKGMTGIVMSHFEPNNFLTAVQNYKVRCLCLVPPIMVFLAKHPICDKFDLSSVQMIMA 315

Query:   189 GAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAK----LGSTGQL 243
             GAAPA K LI++ K+K       I+QGYGMTE   C++ +   +P+ +     GS G+L
Sbjct:   316 GAAPAGKDLIEELKRKYTNLKY-IQQGYGMTE---CSMASH--LPDLRNDQPYGSVGKL 368

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

FB|FBgn0039156 CG6178 [Drosophila melanogaster (taxid:7227)]

 Score = 328 (120.5 bits), Expect = 6.6e-45, Sum P(2) = 6.6e-45
 Identities = 77/234 (32%), Positives = 130/234 (55%)

Query:    22 RGTIVVGGEHDKSKNIFGFKQLVTSQP----PDFQLPKISPN-DLAMLPYSSGTTGVPKG 76
             +G I + G   K KNI+  K+L+  +     PDF  P  + + D++++  SSGTTG+PKG
Sbjct:   149 KGIIALSGTSKKFKNIYDLKELMEDEKFKTQPDFTSPAANKDEDVSLIVCSSGTTGLPKG 208

Query:    77 VKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHM 136
             V+L+  N    L+  + P +   IP  +    T+L+V+P+FH +G   ++    + G  +
Sbjct:   209 VQLTQMNLLATLDSQIQPTV---IPMEEV---TLLTVIPWFHAFGCLTLITTACV-GARL 261

Query:   137 ITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKS 196
             + +PKF  + ++  + KY+  + F+VP L++FLA HP V    L+S+  + CGAAP ++ 
Sbjct:   262 VYLPKFEEKLFLSAIEKYRVMMAFMVPPLMVFLAKHPIVDKYDLSSLMVLLCGAAPLSRE 321

Query:   197 LIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQLVMLGYLK 250
               D+ K+++      IRQGYG++E++   L         K GS G L +  Y K
Sbjct:   322 TEDQIKERIGVP--FIRQGYGLSESTLSVLVQNDEF--CKPGSVGVLKVGIYAK 371

GO:0001676 "long-chain fatty acid metabolic process" evidence=IDA

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=IDA

GO:0046949 "fatty-acyl-CoA biosynthetic process" evidence=IDA

GO:0045289 "luciferin monooxygenase activity" evidence=IDA

GO:0006637 "acyl-CoA metabolic process" evidence=IDA

GO:0004321 "fatty-acyl-CoA synthase activity" evidence=IDA

TAIR|locus:2094716 4CL2 "4-coumarate:CoA ligase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 1.9e-44, Sum P(2) = 1.9e-44
 Identities = 83/234 (35%), Positives = 119/234 (50%)

Query:    23 GTIVVGGEHDK-SKNIFGFKQLVTSQPPDFQ-LP-KISPNDLAMLPYSSGTTGVPKGVKL 79
             G ++V  + D   +N   F +L  S+ P    +P KISP D+  LP+SSGTTG+PKGV L
Sbjct:   156 GVLIVTTDSDAIPENCLRFSELTQSEEPRVDSIPEKISPEDVVALPFSSGTTGLPKGVML 215

Query:    80 SHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITI 139
             +H     ++ Q V  +  N     D   + +L VLP FHIY  N I+   +  G  ++ +
Sbjct:   216 THKGLVTSVAQQVDGENPNLYFNRD---DVILCVLPMFHIYALNSIMLCSLRVGATILIM 272

Query:   140 PKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLID 199
             PKF     +E + + K T+  VVP ++L +A  P      L+S+R V  GAAP  K L D
Sbjct:   273 PKFEITLLLEQIQRCKVTVAMVVPPIVLAIAKSPETEKYDLSSVRMVKSGAAPLGKELED 332

Query:   200 KFKQKVQREDITIRQGYGMTETSPC-TLYTRFAI-P-EAKLGSTGQLVMLGYLK 250
                 K    +  + QGYGMTE  P   +   FA  P   K G+ G +V    +K
Sbjct:   333 AISAKFP--NAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMK 384

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

TAIR|locus:2094771 4CL5 "4-coumarate:CoA ligase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 3.7e-42, Sum P(2) = 3.7e-42
 Identities = 68/213 (31%), Positives = 107/213 (50%)

Query:    40 FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNH 99
             F +L  +   +   PKISP D   +PYSSGTTG+PKGV ++H     ++ Q V  +  N 
Sbjct:   191 FTELTQADETELLKPKISPEDTVAMPYSSGTTGLPKGVMITHKGLVTSIAQKVDGENPN- 249

Query:   100 IPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTIL 159
                + T+ + +L  LP FHIY  + ++   M  G  ++ +P+F     +E + +YK T++
Sbjct:   250 --LNFTANDVILCFLPMFHIYALDALMLSAMRTGAALLIVPRFELNLVMELIQRYKVTVV 307

Query:   160 FVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMT 219
              V P ++L     P      L+S+R +  GAA   K L D  + K    +    QGYGMT
Sbjct:   308 PVAPPVVLAFIKSPETERYDLSSVRIMLSGAATLKKELEDAVRLKFP--NAIFGQGYGMT 365

Query:   220 ETSPCTLYTRFAI-P-EAKLGSTGQLVMLGYLK 250
             E+        FA  P + K G+ G ++    +K
Sbjct:   366 ESGTVAKSLAFAKNPFKTKSGACGTVIRNAEMK 398

GO:0003824 "catalytic activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0009699 "phenylpropanoid biosynthetic process" evidence=IDA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2017602 4CL1 "4-coumarate:CoA ligase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
 Identities = 74/199 (37%), Positives = 104/199 (52%)

Query:    55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVL 114
             +ISP+D+  LPYSSGTTG+PKGV L+H     ++ Q V  +  N    SD   + +L VL
Sbjct:   198 EISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSD---DVILCVL 254

Query:   115 PFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPA 174
             P FHIY  N I+   +  G  ++ +PKF     +E + + K T+  +VP ++L +A    
Sbjct:   255 PMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSE 314

Query:   175 VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPC-TLYTRFAI- 232
                  L+SIR V  GAAP  K L D    K    +  + QGYGMTE  P   +   FA  
Sbjct:   315 TEKYDLSSIRVVKSGAAPLGKELEDAVNAKFP--NAKLGQGYGMTEAGPVLAMSLGFAKE 372

Query:   233 P-EAKLGSTGQLVMLGYLK 250
             P   K G+ G +V    +K
Sbjct:   373 PFPVKSGACGTVVRNAEMK 391

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009411 "response to UV" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009620 "response to fungus" evidence=IEP

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA;TAS

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

DICTYBASE|DDB_G0284831 4cl1 "4-coumarate-CoA ligase" [Dictyostelium discoideum (taxid:44689)]

 Score = 351 (128.6 bits), Expect = 1.4e-39, Sum P(2) = 1.4e-39
 Identities = 90/264 (34%), Positives = 138/264 (52%)

Query:    37 IFGFKQLVTSQPPDFQLPKISPN-DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPD 95
             +  F QL+ +   D+ + +I P  D A++P+SSGTTG+ KGV LSH+N   N  Q     
Sbjct:   174 VMSFNQLINNNGKDYPIVRIDPKKDTAIIPFSSGTTGLFKGVCLSHHNIVSNTYQ----- 228

Query:    96 IVNHIPTSDTSQ-ETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKY 154
                 I TS   + +TV+ +LPFFHIYG    L +++  G  ++ +PKF P  ++E + KY
Sbjct:   229 -TQTIETSTYKKNDTVMGILPFFHIYGLMLFLMLMVKQGHRVVVLPKFEPVRFLELIQKY 287

Query:   155 KPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ 214
             K  I F+VP + +  A  P V    L+S+R +  GAAP +  + D  K++ +   + I+Q
Sbjct:   288 KVAISFIVPPVAIMFAKSPIVDKFDLSSLRTLFSGAAPLSSEVEDLIKERFKGR-LVIKQ 346

Query:   215 GYGMTETSPCTLYTRFAIPEA--KLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVAY 272
             GYG TE SP      F IP    K GS G  ++L     +  + ET ++ G    G++  
Sbjct:   347 GYGATELSPAC----FVIPSGLVKSGSAG--ILLPNQLAKIISPETGENLGMGEKGEICI 400

Query:   273 YDED---GYFYIVDRTKELIKVKG 293
                +   GY+     T E+I   G
Sbjct:   401 KGPNVMLGYYNNEKATNEVIDKDG 424

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016207 "4-coumarate-CoA ligase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016874 "ligase activity" evidence=IEA

GO:0009698 "phenylpropanoid metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TIGR_CMR|CHY_0437 CHY_0437 "long-chain-fatty-acid--CoA ligase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 313 (115.2 bits), Expect = 3.3e-39, Sum P(2) = 3.3e-39
 Identities = 72/200 (36%), Positives = 113/200 (56%)

Query:    30 EHDKSKNIFGFKQLVTSQPPDFQLPKISPN-DLAMLPYSSGTTGVPKGVKLSHNNCAVNL 88
             E  K   I GF++L+ S P       I+P  DLA+L Y+ GTTG+ KGV L+H N   N 
Sbjct:   178 EIPKESFILGFQELLKSPPQPLAKITINPEEDLAVLQYTGGTTGISKGVMLTHRNLIANA 237

Query:    89 EQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYI 148
              Q      VN      +SQ+ +L+V+PFFH+YG +  LN+ ++ G  ++ +P+F  +  +
Sbjct:   238 MQ------VNAWDPVRSSQDIILAVMPFFHVYGLSVALNLAVLTGATLLIMPRFNVDEML 291

Query:   149 ECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQRE 208
             + +VKY+PT+    P++ + + +HP +    + SIR    G+AP    +  KF      E
Sbjct:   292 KTIVKYRPTLFPGAPTIYVAIINHPRIKDYDITSIRLCISGSAPLPVEVKKKF------E 345

Query:   209 DIT---IRQGYGMTETSPCT 225
             +IT   I +GYG+TE+SP T
Sbjct:   346 EITGGRIVEGYGLTESSPVT 365

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	334
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-92
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	5e-88
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	4e-69
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	9e-68
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	1e-67
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	6e-65
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	1e-64
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	5e-63
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	6e-61
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	2e-59
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	3e-57
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	9e-55
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	3e-50
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	1e-48
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-47
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-45
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	1e-42
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	2e-42
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	4e-41
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	5e-41
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	1e-40
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	1e-39
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	1e-39
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	2e-39
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	1e-38
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	1e-38
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	3e-37
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	6e-37
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	7e-37
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	4e-36
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	2e-35
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	1e-34
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	1e-34
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	2e-34
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	2e-34
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	2e-33
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	2e-32
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	4e-32
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	5e-32
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	2e-31
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	2e-31
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	5e-31
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	9e-31
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	2e-29
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	2e-28
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-27
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	4e-27
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	2e-26
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	2e-25
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	2e-25
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	4e-25
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	5e-25
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	2e-24
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	7e-24
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	1e-23
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	2e-23
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	3e-23
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	4e-22
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	4e-22
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	4e-22
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	4e-22
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	9e-22
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	2e-21
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	4e-21
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	9e-21
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	3e-20
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	3e-20
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	4e-20
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	5e-20
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	5e-20
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	7e-20
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	7e-20
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	2e-19
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	2e-19
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	3e-19
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	3e-19
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	4e-19
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	3e-18
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	9e-18
cd05921	559	cd05921, FCS, Feruloyl-CoA synthetase (FCS)	1e-17
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	1e-17
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	1e-17
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-17
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	2e-17
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	2e-17
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	3e-17
PRK06334	539	PRK06334, PRK06334, long chain fatty acid--[acyl-c	4e-17
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	1e-16
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	2e-16
PRK08180	614	PRK08180, PRK08180, feruloyl-CoA synthase; Reviewe	5e-16
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	8e-16
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	8e-16
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	1e-15
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	1e-15
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	2e-15
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-15
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	6e-15
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	3e-14
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	3e-14
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	5e-14
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	1e-13
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	4e-13
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	6e-13
PRK09274	552	PRK09274, PRK09274, peptide synthase; Provisional	8e-13
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	8e-13
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	1e-12
PRK12582	624	PRK12582, PRK12582, acyl-CoA synthetase; Provision	1e-12
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	1e-12
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	2e-12
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	2e-12
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	2e-12
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	5e-12
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-11
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	2e-11
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	2e-11
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	5e-11
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	5e-11
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	1e-10
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-10
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	2e-10
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	5e-10
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	6e-10
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	9e-10
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	1e-09
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	2e-09
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	2e-09
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-09
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	6e-09
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	7e-09
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	8e-09
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-08
cd05938	535	cd05938, hsFATP2a_ACSVL_like, Fatty acid transport	2e-08
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-08
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	5e-08
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	1e-07
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	2e-07
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-07
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	3e-07
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	3e-07
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	4e-07
cd05905	556	cd05905, Dip2, Disco-interacting protein 2 (Dip2)	7e-07
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	8e-07
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	9e-07
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	1e-06
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	1e-06
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	3e-06
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	6e-06
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	8e-06
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	9e-06
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	1e-05
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	1e-05
PRK12467	3956	PRK12467, PRK12467, peptide synthase; Provisional	2e-05
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	2e-05
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	3e-05
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	4e-05
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	7e-05
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	8e-05
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	1e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	2e-04
TIGR01734	502	TIGR01734, D-ala-DACP-lig, D-alanine--poly(phospho	2e-04
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	2e-04
PTZ00342	746	PTZ00342, PTZ00342, acyl-CoA synthetase; Provision	3e-04
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	5e-04
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	5e-04
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	7e-04
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	7e-04
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	9e-04
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	0.001
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	0.001
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	0.002
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	0.002
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	0.002
COG1541	438	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme	0.002
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	0.003
PRK04813	503	PRK04813, PRK04813, D-alanine--poly(phosphoribitol	0.003
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	0.004

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  284 bits (728), Expect = 1e-92
 Identities = 128/327 (39%), Positives = 169/327 (51%), Gaps = 42/327 (12%)

Query: 5   PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQ-LVTSQPPDFQLPKI-SPNDLA 62
           P  L+   +    L      IV+    D    I    +  + ++      P I   +D A
Sbjct: 90  PDELDKVKEAAKELGPVVRIIVLDSAPDGVLRIEDLLEPRLGAEDEFRPTPLIDGKDDTA 149

Query: 63  MLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGF 122
            L YSSGTTG+PKGV LSH N   NL Q       N     D+S + VL+ LPF+H YG 
Sbjct: 150 ALLYSSGTTGLPKGVMLSHKNIIANLSQVQDTLKGNP----DSSNDVVLTFLPFYHAYGL 205

Query: 123 NGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLAS 182
              L   ++ G  +I +PKF  ET+++ + KYK T LF+VP + + LA  P V    L+S
Sbjct: 206 TTTLAS-LLCGATVIIMPKFDSETFLKLIEKYKVTSLFLVPPIAVALAKSPLVDKYDLSS 264

Query: 183 IREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ 242
           +R +  GAAP +K L ++ +++      TI+QGYGMTET P T  T     + K GS G+
Sbjct: 265 LRVIFSGAAPLSKELQEELRKRFPNT--TIKQGYGMTETGPATTLTPP--GDEKPGSVGR 320

Query: 243 L-------------------------------VMLGYLKNEEATKETVDSEGWLHTGDVA 271
           L                               +M GYL N EATKET+D +GWLHTGD+ 
Sbjct: 321 LVPNVEAKIVDEDGGKSLGPNERGELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIG 380

Query: 272 YYDEDGYFYIVDRTKELIKVKGNQVAP 298
           Y+DEDG FYIVDR KELIK KG QV P
Sbjct: 381 YFDEDGNFYIVDRKKELIKYKGYQVPP 407

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score =  272 bits (698), Expect = 5e-88
 Identities = 118/306 (38%), Positives = 162/306 (52%), Gaps = 41/306 (13%)

Query: 24  TIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN 83
            +++    D S  I     L+ +  P+  +  I  +D+A LPYSSGTTG  KGV L+H N
Sbjct: 126 VVLLDSADDGSAAI---DDLLFADEPEPPVVVIKQDDVAALPYSSGTTGRSKGVMLTHRN 182

Query: 84  CAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFT 143
              N+ Q     +V     +   ++  L VLP FHIYG   IL  ++  G  ++ +P+F 
Sbjct: 183 LIANVAQ-----LVAGEGPNFDREDVTLCVLPMFHIYGLTVILLALLRLGATVVVMPRFD 237

Query: 144 PETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQ 203
            E ++  + KYK T L VVP ++L L  HP V    L+S++++  GAAP  K L + F+ 
Sbjct: 238 LEKFLAAIEKYKVTHLPVVPPIVLALVKHPIVDKYDLSSLKQIGSGAAPLGKELAEAFRA 297

Query: 204 KVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQL-------------------- 243
           +     + + QGYGMTE+SP T        + K GS G+L                    
Sbjct: 298 RF--PGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVEAKIVDPETGESLPPN 355

Query: 244 -----------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
                      VM GYL N EAT ET+D +GWLHTGD+ Y+DEDGY +IVDR KELIK K
Sbjct: 356 QPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDGYLFIVDRLKELIKYK 415

Query: 293 GNQVAP 298
           G QVAP
Sbjct: 416 GFQVAP 421

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  222 bits (569), Expect = 4e-69
 Identities = 96/288 (33%), Positives = 140/288 (48%), Gaps = 38/288 (13%)

Query: 40  FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNH 99
           F+  + S  P     ++SP+DLA+L Y+ GTTGVPKG  L+H N   N++Q      V  
Sbjct: 106 FEDALASGAPLPLPVELSPDDLAVLQYTGGTTGVPKGAMLTHRNLVANVQQIA--AWVKD 163

Query: 100 IPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTIL 159
           +      ++  L+ LP FHI+G    + + +  G   + +P F P   ++ + +Y+ TI 
Sbjct: 164 L---REGEDRFLTALPLFHIFGLTVNMLLGLRLGATNVLVPNFRPINVLKEIKRYRFTIF 220

Query: 160 FVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMT 219
             VP+L   L +HP       +S+R    G AP    + ++F++K       + +GYG+T
Sbjct: 221 PGVPTLYNALLNHPEFKKYDFSSLRLCISGGAPLPVEVAERFEEKTG---APLVEGYGLT 277

Query: 220 ETSPCTLYTRFAIP-------------EAKL----------GSTGQL------VMLGYLK 250
           ETSP T                     E K+          G  G+L      VM GY  
Sbjct: 278 ETSPVTTVNPLDGERKPGSIGLPLPGTEVKIVDDEGNELPPGEVGELVVRGPQVMKGYWN 337

Query: 251 NEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
             E T E +  +GWL TGD+ Y DEDGYFYIVDR K++I V G  V P
Sbjct: 338 RPEETAEVLT-DGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNVYP 384

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  221 bits (564), Expect = 9e-68
 Identities = 103/293 (35%), Positives = 138/293 (47%), Gaps = 41/293 (13%)

Query: 40  FKQLVTSQP-PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVN 98
            + L    P PD     + P+DLA L Y+SGTTG+PKGV L+H N   N        I  
Sbjct: 151 LEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAG-----IAA 205

Query: 99  HIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP--KFTPETYIECVVKYKP 156
            +    T  + VLS LP FHI+G    L   ++ G  ++ +    F PE  +  + KYK 
Sbjct: 206 ALGGGLTPDDVVLSWLPLFHIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKV 265

Query: 157 TILFVVPSLLLFLASHPAVTPEHLAS-IREVTCGAAPATKSLIDKFKQKVQREDITIRQG 215
           T+L  VP+ L  L  +P    + L+S +R V  G AP    L+++F+++     I I +G
Sbjct: 266 TVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLPPELLERFEER--FGPIAILEG 323

Query: 216 YGMTETSPCTLYTRFAIPEAKLGSTGQL------------------------------VM 245
           YG+TETSP           AK GS G+                               VM
Sbjct: 324 YGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLPGEVGEIWVRGPNVM 383

Query: 246 LGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
            GY    EAT E  D +GWL TGD+ Y DEDGY YIV R K+LI   G  + P
Sbjct: 384 KGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYP 436

Length = 534

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  217 bits (555), Expect = 1e-67
 Identities = 89/328 (27%), Positives = 137/328 (41%), Gaps = 46/328 (14%)

Query: 5   PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAML 64
            +LL    ++   L      I+VG + +         +L+     +   P + P+DLA +
Sbjct: 79  DELLPKLLEVLLKLLVLLALIIVGDDGEGL--DLLDDELLAGASAEPPAPPVDPDDLAYI 136

Query: 65  PYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG 124
            Y+SGTTG PKGV L+H N                     T  + VL +LP         
Sbjct: 137 IYTSGTTGKPKGVMLTHRNLLALAAGLAE-------RFGLTPGDRVLLLLPLHFDGSVWE 189

Query: 125 ILNVVMMYGMHMITIPKFT--PETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLAS 182
           I    ++ G  ++ +PKFT  P   ++ + KYK T+L+ VP+LL  L   P      L+S
Sbjct: 190 IF-GPLLAGGTLVLVPKFTLDPARLLDLIEKYKVTVLYGVPTLLRLLLKAPEEKKYDLSS 248

Query: 183 IREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGS--- 239
           +R V  G  P    L+ + +++     + +  GYG TET+          PE K GS   
Sbjct: 249 LRLVLSGGEPLPPELLRRLRERF--GGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGR 306

Query: 240 ---------------------------TGQLVMLGYLKNEEATKETVDSEGWL--HTGDV 270
                                       G  V  GYL + E T E    +GW    TGD+
Sbjct: 307 PLPGVEVKVLDEEGEPVPPGEVGELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDL 366

Query: 271 AYYDEDGYFYIVDRTKELIKVKGNQVAP 298
             +DEDGY  I+ R  + +K++G ++ P
Sbjct: 367 GRWDEDGYLEILGRKDDQVKIRGERIEP 394

Length = 412

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  213 bits (544), Expect = 6e-65
 Identities = 99/327 (30%), Positives = 145/327 (44%), Gaps = 50/327 (15%)

Query: 5   PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFG--FKQLVTSQPPDFQLPKISPNDLA 62
            + + +   I   LP  R  IV G             +++L+ +    F  P I  ND A
Sbjct: 111 SEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASDTFDFPDIDENDAA 170

Query: 63  MLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGF 122
            + Y+SGTTG PKGV LSH N  ++                 +  +  L ++P FH++ +
Sbjct: 171 AMLYTSGTTGHPKGVVLSHRNLFLHSLAV-------CAWLKLSRDDVYLVIVPMFHVHAW 223

Query: 123 NGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLAS 182
            G+  + +M G   +   +F PE  ++ +   + T  F VP++   L   P       +S
Sbjct: 224 -GLPYLALMAGAKQVIPRRFDPENLLDLIETERVTFFFAVPTIWQMLLKAPRAYFVDFSS 282

Query: 183 IREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF------------ 230
           +R V  G A    +L+ +FK+K     I + QGYGMTETSP                   
Sbjct: 283 LRLVIYGGAALPPALLREFKEKF---GIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRR 339

Query: 231 ----AIP--EAKL------------GSTGQLV------MLGYLKNEEATKETVDSEGWLH 266
                +P  EA++            G  G+++      M GY    EAT ET+D  GWLH
Sbjct: 340 SAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDG-GWLH 398

Query: 267 TGDVAYYDEDGYFYIVDRTKELIKVKG 293
           TGDV Y DEDGY YI DR K++I   G
Sbjct: 399 TGDVGYIDEDGYLYITDRIKDVIISGG 425

Length = 521

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score =  212 bits (543), Expect = 1e-64
 Identities = 113/298 (37%), Positives = 151/298 (50%), Gaps = 41/298 (13%)

Query: 36  NIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPD 95
               F +L  +   +    +ISP+D+  LPYSSGTTG+PKGV L+H     ++ Q V  +
Sbjct: 156 GCLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGE 215

Query: 96  IVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYK 155
             N    SD   + +L VLP FHIY  N +L   +  G  ++ +PKF     +E + ++K
Sbjct: 216 NPNLYFHSD---DVILCVLPMFHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHK 272

Query: 156 PTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQG 215
            TI   VP ++L +A  P V    L+SIR V  GAAP  K L D F+ K+      + QG
Sbjct: 273 VTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKELEDAFRAKLPNA--VLGQG 330

Query: 216 YGMTETSP----CTLYTRFAIPEAKLGSTGQLV--------------------------- 244
           YGMTE  P    C  + +   P  K GS G +V                           
Sbjct: 331 YGMTEAGPVLAMCLAFAKEPFP-VKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIR 389

Query: 245 ----MLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
               M GYL + EAT  T+D +GWLHTGD+ Y D+D   +IVDR KELIK KG QVAP
Sbjct: 390 GPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAP 447

Length = 537

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  203 bits (519), Expect = 5e-63
 Identities = 84/275 (30%), Positives = 129/275 (46%), Gaps = 46/275 (16%)

Query: 58  PNDLAMLPYSSGTTGVPKGVKLSHNNC---AVNLEQCVHPDIVNHIPTSDTSQETVLSVL 114
           P+D A++ Y+SGTTG PKG  L+H N      ++ + +            T  +  L  +
Sbjct: 1   PDDPALIQYTSGTTGRPKGAMLTHRNVLNNGYSIARRLGL----------TEGDRTLVPV 50

Query: 115 PFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPA 174
           P FH++G    +   +  G  ++ + KF P   +  + + + T L  VP++ + L  HP 
Sbjct: 51  PLFHVFGLVLGVLASLTAGATLVLMEKFDPGAALRLIERERITALHGVPTMFIALLEHPD 110

Query: 175 VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTR----- 229
                L+S+R    G AP    L+ + +++    +IT   GYGMTETS     T      
Sbjct: 111 FDKFDLSSLRTGISGGAPVPPELVRRIREEFPMAEITT--GYGMTETSGVGTQTSGDDPY 168

Query: 230 --------FAIP--EAKL----------GSTGQL------VMLGYLKNEEATKETVDSEG 263
                     +P  E K+          G  G++      VM GY  + EAT E +D++G
Sbjct: 169 EDRPGTVGRPLPGVEVKIVDPDGGEVPPGEVGEICVRGYSVMKGYYNDPEATAEAIDADG 228

Query: 264 WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           WLHTGD+ Y DEDGY  IV R K++I   G  + P
Sbjct: 229 WLHTGDLGYMDEDGYLRIVGRIKDMIIRGGENIYP 263

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  197 bits (504), Expect = 6e-61
 Identities = 88/270 (32%), Positives = 123/270 (45%), Gaps = 40/270 (14%)

Query: 60  DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHI 119
           D A + Y+SGTTG PKGV LSH N   N +               T  + +LSVLP FH+
Sbjct: 1   DPAFILYTSGTTGKPKGVVLSHRNLLANAQALAQA-------IGLTEGDVLLSVLPLFHV 53

Query: 120 YGFNGILNVVMMYGMHMITIPKF-TPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
            G    L   ++ G  ++    F  P +++E + +Y+ T+LF VP+L   LA        
Sbjct: 54  VGGGSGLLGALLAGGTVVLYEGFPFPLSFLELIEQYRVTVLFGVPTLYDALAKAAEDRGY 113

Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTR--------- 229
            L+S+R +  G  P +  L+++F    +R    I +GYG+TETS  T             
Sbjct: 114 DLSSLRLLISGGEPLSPELLERF---EERPGAPILEGYGLTETSVVTSTNPDSELKKPGT 170

Query: 230 --FAIP------------EAKLGSTGQLV------MLGYLKNEEATKETVDSEGWLHTGD 269
               +P                G  G+LV      M GY  N   T      +GW  TGD
Sbjct: 171 VGRPVPGVEVRVVDEEGKPLPPGEVGELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGD 230

Query: 270 VAYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
           + Y DE+GY YI  R+K+LIKV G  V P 
Sbjct: 231 LGYLDEEGYLYITGRSKDLIKVGGENVYPA 260

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  198 bits (505), Expect = 2e-59
 Identities = 93/327 (28%), Positives = 149/327 (45%), Gaps = 44/327 (13%)

Query: 6   QLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFG--FKQLVTSQPPDFQLPKISPNDLAM 63
             L V       LP     ++   E D         F   + +  P  + P++ P+D+A 
Sbjct: 111 LFLGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAERAPEVDPDDVAD 170

Query: 64  LPYSSGTTGVPKGVKLSHNNCAVNLEQ-CVHPDIVNHIPTSDTSQETVLSVLPFFHIYGF 122
           + ++SGTTG PKG  L+H     N      +  +        T  +  L+  PFFH++G+
Sbjct: 171 ILFTSGTTGRPKGAMLTHRQLLSNAADWAEYLGL--------TEGDRYLAANPFFHVFGY 222

Query: 123 NGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLAS 182
              +N  +M G  ++ +P F P+     +   + T+L   P++   L  HP  + E L+S
Sbjct: 223 KAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTMYNSLLQHPDRSAEDLSS 282

Query: 183 IREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF------------ 230
           +R    GAA    +L+++F+ ++  +   +  GYG++E S  T + R             
Sbjct: 283 LRLAVTGAASMPVALLERFESELGVD--IVLTGYGLSEASGVTTFNRLDDDRKTVAGTIG 340

Query: 231 -AIP------------EAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVA 271
            AI             E  +G  G+L      VM GY  + EAT   +D++GWLHTGD+ 
Sbjct: 341 TAIAGVENKIVNELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLG 400

Query: 272 YYDEDGYFYIVDRTKELIKVKGNQVAP 298
             DE+GY YIVDR K++  V G  V P
Sbjct: 401 RLDEEGYLYIVDRKKDMFIVGGFNVYP 427

Length = 513

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  188 bits (480), Expect = 3e-57
 Identities = 91/271 (33%), Positives = 124/271 (45%), Gaps = 46/271 (16%)

Query: 60  DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV-LSVLPFFH 118
           D A++ Y+SGTTG PKGV L+H N   N         VN +   D S   V L   P +H
Sbjct: 2   DPALILYTSGTTGRPKGVMLTHRNLLAN--------AVNALAGVDLSPGDVYLLAAPLYH 53

Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
             G   +L  +   G  ++  PKF PE  ++ + +++ T  F+VP++   L   P     
Sbjct: 54  AAGGLFLLPALAAGGTVVLM-PKFDPEAVLDLIERHRVTHTFLVPTMFQRLLRLPDFARY 112

Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQRE-DITIRQGYGMTETSPCTLYTRFAIPEAKL 237
            L+S+R +  GAAP    +  + K+ +         QGYGMTET P T          KL
Sbjct: 113 DLSSLRLIIYGAAP----MPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKL 168

Query: 238 GSTGQ------------------------------LVMLGYLKNEEATKETVDSEGWLHT 267
           GS G+                               VM GY    EAT E +  +GWLHT
Sbjct: 169 GSVGRPVPGVEVRIVDEDGRELPPGEVGEIVVRGPAVMAGYWNRPEATAEALR-DGWLHT 227

Query: 268 GDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           GD+ Y DEDGY YIVDR K++I   G  + P
Sbjct: 228 GDLGYLDEDGYLYIVDRKKDMIISGGENIYP 258

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score =  185 bits (471), Expect = 9e-55
 Identities = 86/275 (31%), Positives = 125/275 (45%), Gaps = 46/275 (16%)

Query: 57  SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPF 116
            P+DLA L Y+SGTTG PKGV L+H N            ++  IP   +  + VLS LP 
Sbjct: 86  KPDDLATLIYTSGTTGNPKGVMLTHRNLLAQAAA-----LLEVIPL--SPGDRVLSFLPL 138

Query: 117 FHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLL--LFLASHPA 174
            H++       + +  G  +      +PET +E + + +PT+ F VP +   ++      
Sbjct: 139 AHVFEQRLGEYLPLSSGARVNFAE--SPETLLEDLREVRPTVFFAVPRVWEKIYAGIEAK 196

Query: 175 VTPEH------------LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS 222
           V                   +R    G AP    +++ F    +   I I +GYG+TETS
Sbjct: 197 VAAAGPLKRKLFRWALGGGRLRFAVSGGAPLPPEVLEFF----RALGIPILEGYGLTETS 252

Query: 223 PCTLYTRF----------AIP--EAKLGSTGQL------VMLGYLKNEEATKETVDSEGW 264
                 R            +P  E ++   G++      VM GY KN EAT E +D +GW
Sbjct: 253 GVATVNRPGDIRIGTVGKPLPGVEVRIAEDGEILVRGPNVMKGYYKNPEATAEALDEDGW 312

Query: 265 LHTGDVAYYDEDGYFYIVDRTKELIKV-KGNQVAP 298
           LHTGD+   DEDG+  I DR K+LI    G  +AP
Sbjct: 313 LHTGDIGRLDEDGFLVITDRKKDLIVTAGGKNIAP 347

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  172 bits (438), Expect = 3e-50
 Identities = 73/272 (26%), Positives = 126/272 (46%), Gaps = 42/272 (15%)

Query: 59  NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
           +D+A++PY+SGTTG+PKG   +H                + +    T    +L+ LP FH
Sbjct: 84  DDVAVIPYTSGTTGLPKGCMHTHRTVLAT---AAASAAWSGL----TPDSVLLAFLPLFH 136

Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
           + G  G +N  +  G  ++ + ++  E     + +Y+ T    + ++++ L +HP     
Sbjct: 137 VAGMQGSMNAPIYTGATLVLLTRWDREAAARAIERYRVTHWTNIVTMVVDLLAHPRFADY 196

Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTR--------F 230
            L+S++ V  G A    ++ ++ K       +   +GYG+TET  CT +           
Sbjct: 197 DLSSLKVVGGGGAALPPAVAERLKA---LTGLLYEEGYGLTETHTCTHFNPPDRPKPQCL 253

Query: 231 AIP----EAK-----------LGSTGQLV------MLGYLKNEEATKET---VDSEGWLH 266
            IP    +A+            G  G++V        GY    EAT E+   +D + +  
Sbjct: 254 GIPVFGTDARVIDPETGEELPPGEEGEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFR 313

Query: 267 TGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           TGD+ Y DE+GYF+ +DR K +I V G +V P
Sbjct: 314 TGDLGYIDEEGYFFFLDRVKRMINVSGYKVWP 345

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score =  170 bits (432), Expect = 1e-48
 Identities = 91/338 (26%), Positives = 148/338 (43%), Gaps = 70/338 (20%)

Query: 5   PQLLEVGTKIGATLPNFRGTIVVGGEH---DKSKNIFGFKQLVTSQPPDFQLPKISPNDL 61
              L +   I   LP  +  +V            N++ +++L+  + P+++ P++  N  
Sbjct: 105 DDFLPLLEAIAPRLPTVKAVVVYDDADMPETSLPNVYAYEELLEEESPEYEWPELDENTA 164

Query: 62  AMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNH---IPTSD----TSQETVLSVL 114
           A L Y+SGTTG PKGV  SH              +V H       D    +  +TVL V+
Sbjct: 165 AGLCYTSGTTGNPKGVVYSHR------------SLVLHTLASALPDSLGLSESDTVLPVV 212

Query: 115 PFFHIYGFNGILNVVMMYGMHMITI-PKFTPETYIECVVKYKPTILFVVPSLLLFLASHP 173
           P FH+  + G+     M G  ++       P + ++ + + K T+   VP++ L L ++ 
Sbjct: 213 PMFHVNAW-GLPYAATMVGAKLVLPGRYLDPASLLDLIEEEKVTVSAGVPTIWLGLLNYL 271

Query: 174 AVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF--- 230
               + L+S+R V  G +   +SLI+K +++     + +   +GMTETSP    +R    
Sbjct: 272 EANGKDLSSLRRVVVGGSALPRSLIEKLEER----GVEVIHAWGMTETSPLGTVSRLKPH 327

Query: 231 ---AIPEAKL-----------------------------GSTGQLVMLG------YLKNE 252
                 E KL                              + G+LV+ G      Y K+ 
Sbjct: 328 LVDLPEEEKLELRAKQGRPVPGVELRIVDDEGNELPWDGKTVGELVVRGPWVTGSYYKDP 387

Query: 253 EATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIK 290
           E T+E +  +GW  TGDVA  DEDGY  I DR K++IK
Sbjct: 388 EKTEE-LTRDGWFRTGDVAVIDEDGYIQITDRAKDVIK 424

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score =  167 bits (425), Expect = 2e-47
 Identities = 106/299 (35%), Positives = 152/299 (50%), Gaps = 36/299 (12%)

Query: 32  DKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQC 91
            K      F +L+         P I  +D+A + YSSGTTG  KGV L+H N    +E  
Sbjct: 171 SKRIEFPKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELF 230

Query: 92  VHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECV 151
           V  +   +      S    L+ LP FHIYG +  +  ++  G  ++ + +F     ++ +
Sbjct: 231 VRFEASQYEYPG--SDNVYLAALPMFHIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVI 288

Query: 152 VKYKPTILFVVPSLLLFLA-SHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210
            ++K T   VVP +L+ L      V  E L S+++V+CGAAP +   I  F Q +   D 
Sbjct: 289 DRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDF 348

Query: 211 TIRQGYGMTE----------TSPCTLYTRFAI--P--EAKL-----------GSTGQL-- 243
              QGYGMTE          T   + Y+   +  P  +AK+           G+ G+L  
Sbjct: 349 I--QGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWI 406

Query: 244 ----VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
               VM GYL N +AT+ T+D +GWL TGD+AY+DEDGY YIVDR KE+IK KG Q+AP
Sbjct: 407 QGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAP 465

Length = 560

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score =  163 bits (415), Expect = 1e-45
 Identities = 88/326 (26%), Positives = 129/326 (39%), Gaps = 79/326 (24%)

Query: 40  FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNH 99
              L+ S   + ++    P+DLA + Y+SGTTG PKGV L+H N    +       I   
Sbjct: 172 SLFLIDSAGLEGRIAPPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAG-----IDEV 226

Query: 100 IPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTIL 159
           +P      + VLS LP  HI+       + +  G+    + K  P T +E + + +PT++
Sbjct: 227 LPPI-GPGDRVLSFLPLAHIFERAFEGGLALYGGV--TVLFKEDPRTLLEDLKEVRPTVM 283

Query: 160 FVVPSL--LLFLASHPAV-------------------------------TPEHLAS---- 182
             VP +   ++      V                                   L +    
Sbjct: 284 IGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLV 343

Query: 183 ---IREVT--------CGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA 231
              IR+           G AP +   +  F + +    I I +GYG+TETS         
Sbjct: 344 FRKIRDALGGRIRYALSGGAPLSPE-LLHFFRSL---GIPILEGYGLTETSAVVSVNPPD 399

Query: 232 ----------IP--EAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYY 273
                     +P  E K+   G++      VM GY KN EAT E    +GW  TGD+   
Sbjct: 400 RFVLGTVGKPLPGIEVKIADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGEL 459

Query: 274 DEDGYFYIVDRTKELIKV-KGNQVAP 298
           DEDGY  I  R KELIK+  G  +AP
Sbjct: 460 DEDGYLVITGRKKELIKLSNGKNIAP 485

Length = 613

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score =  154 bits (390), Expect = 1e-42
 Identities = 93/282 (32%), Positives = 137/282 (48%), Gaps = 49/282 (17%)

Query: 56  ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQC---VHPDIVNHIPTSDTSQETVLS 112
           I   DL  LP+SSGTTG+ KGV L+H N   NL      V P+++  + T        L 
Sbjct: 181 ILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSVGPEMIGQVVT--------LG 232

Query: 113 VLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASH 172
           ++PFFHIYG  GI    +     ++ + +F   T++  ++  + +   +VP ++L L  +
Sbjct: 233 LIPFFHIYGITGICCATLRNKGKVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKN 292

Query: 173 PAVTPEHLA--SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLY--- 227
           P V    L+   ++ +   AAP    L+  F+ K     + +++ YG+TE S  TL    
Sbjct: 293 PIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKF--PGVQVQEAYGLTEHSCITLTHGD 350

Query: 228 ----------------------------TRFAIPEAKLGST---GQLVMLGYLKNEEATK 256
                                       T  ++P+   G      Q VM GY  N+E T 
Sbjct: 351 PEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETD 410

Query: 257 ETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
            T+D +GWLHTGD+ Y D+DG  +IVDR KELIK KG QVAP
Sbjct: 411 RTIDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAP 452

Length = 546

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score =  154 bits (390), Expect = 2e-42
 Identities = 97/273 (35%), Positives = 136/273 (49%), Gaps = 45/273 (16%)

Query: 59  NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
           NDLA+L Y+ GTTG PKGV L+H N   N    V       +      +E VL VLPFFH
Sbjct: 206 NDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQ-----WLYNCKEGEEVVLGVLPFFH 260

Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
           +YG   ++N+ +M G  M+ IPKF  +   E + K+K T+    P++ + L + P +   
Sbjct: 261 VYGMTAVMNLSIMQGYKMVLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEY 320

Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDIT---IRQGYGMTETSPCT---------- 225
            ++SIR    G+AP    + +KF      E +T   + +GYG+TE+SP T          
Sbjct: 321 DISSIRACISGSAPLPVEVQEKF------ETVTGGKLVEGYGLTESSPVTHSNFLWEKRV 374

Query: 226 -----------------LYTRFAIPEAKLGS---TGQLVMLGYLKNEEATKETVDSEGWL 265
                            L T  A+P  ++G     G  +M GY    E T   V  +GWL
Sbjct: 375 PGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETA-AVLQDGWL 433

Query: 266 HTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           HTGDV Y DEDG+FY+ DR K++I   G  V P
Sbjct: 434 HTGDVGYMDEDGFFYVKDRKKDMIVASGFNVYP 466

Length = 563

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score =  149 bits (378), Expect = 4e-41
 Identities = 87/277 (31%), Positives = 124/277 (44%), Gaps = 43/277 (15%)

Query: 51  FQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV 110
             L    P+D A++ ++SG+ G+PKGV LSH N   N++Q     I   I  +   ++ +
Sbjct: 137 LFLAGAKPDDPAVILFTSGSEGLPKGVVLSHRNLLANIDQ-----IAAVIDLNT--EDVL 189

Query: 111 LSVLPFFHIYGFNGILNVVMMYGMHMITIPKFT-PETYIECVVKYKPTILFVVPSLLLFL 169
           L  LP FH +G    L + ++ G+ ++  P     +   E +  YK TIL   P+ L   
Sbjct: 190 LGALPLFHAFGLTVTLLLPLLTGLRVVYYPNPLDAKKIAELIRDYKATILCGTPTFLRGY 249

Query: 170 ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP---CTL 226
           A      PE  +S+R V  GA    ++  + F++K     I I +GYG TE SP      
Sbjct: 250 AR--NAHPEDFSSLRLVVAGAEKLPEATRELFEEKFG---IRILEGYGATECSPVISVNT 304

Query: 227 YTRF-------AIP-------------EAKLGSTGQL------VMLGYLKNEEATKE-TV 259
                       +P             E  +G  G L      VM GYL NEE T E  V
Sbjct: 305 PMGNKPGTVGRPLPGIEVRIVSPETHEELPIGEGGLLLVRGPNVMSGYLNNEEKTSEVEV 364

Query: 260 DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
             +GW  TGD+   DEDG+  IV R K   K+ G  V
Sbjct: 365 LGDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIGGEMV 401

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score =  152 bits (387), Expect = 5e-41
 Identities = 90/289 (31%), Positives = 126/289 (43%), Gaps = 53/289 (18%)

Query: 51   FQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV 110
               P   P+D A + +SSG+ G PKGV LSH+N   N+EQ    D+ N       + + +
Sbjct: 774  LYGPTFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQIS--DVFNL-----RNDDVI 826

Query: 111  LSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYI-ECVVKYKPTILFVVPSLLLFL 169
            LS LPFFH +G    L + ++ G+ ++  P  T    I + V K++ TIL   P+ L   
Sbjct: 827  LSSLPFFHSFGLTVTLWLPLLEGIKVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLY 886

Query: 170  ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP------ 223
              +  + P   AS+R V  GA      + D F++K     I I +GYG TETSP      
Sbjct: 887  LRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFG---IRILEGYGATETSPVASVNL 943

Query: 224  ----CTLYTR----------FAIP-------------EAKLGSTGQL------VMLGYLK 250
                   + R            +P             E   G  G +      VM GYL 
Sbjct: 944  PDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLG 1003

Query: 251  NEEATKE---TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
            + E T E    +D  GW  TGD  + DEDG+  I DR     K+ G  V
Sbjct: 1004 DPEKTAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMV 1052

Length = 1146

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  146 bits (371), Expect = 1e-40
 Identities = 69/270 (25%), Positives = 111/270 (41%), Gaps = 43/270 (15%)

Query: 60  DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHI 119
           D A + Y+SGTTG PKGV L+H                          + +L+ LP FHI
Sbjct: 82  DTAAILYTSGTTGPPKGVLLTHAQLLFAARLAARL-------LGLRPDDVLLTPLPLFHI 134

Query: 120 YGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEH 179
                 +   ++ G  ++ +P+F+   + + V K+  T+  ++ ++   L   P    + 
Sbjct: 135 NAQAYSVYAALLVGATLVLLPRFSASRFWDQVRKHGATVFNLLGAMAAILMKQPPSPDDR 194

Query: 180 LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP------ 233
              +R      AP   ++   F++   R  + + +GYGMTET    +      P      
Sbjct: 195 DHPLRF--VFGAPLPAAIWPAFEE---RFGVKLVEGYGMTETGVPIIAPGDPAPPGSCGR 249

Query: 234 -----EAKL----------GSTGQLV---------MLGYLKNEEATKETVDSEGWLHTGD 269
                E ++          G  G+LV           GY    EAT +     GW HTGD
Sbjct: 250 PRPGVEVRIVDEDGREVPPGEVGELVVRPRRPWAMFKGYYGMPEATAKAWR-NGWFHTGD 308

Query: 270 VAYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
               DEDG+ Y VDR K+ I+ +G  ++ Y
Sbjct: 309 RGRRDEDGFLYFVDRKKDAIRRRGENISSY 338

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  142 bits (360), Expect = 1e-39
 Identities = 78/275 (28%), Positives = 115/275 (41%), Gaps = 45/275 (16%)

Query: 60  DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHI 119
           DLA + Y+SG+TG PKGV LSH N            I  ++    T  + +L+VLPF   
Sbjct: 3   DLAAIIYTSGSTGEPKGVMLSHRNLTAGAR-----SIAQYL--ELTEDDRILAVLPFSFD 55

Query: 120 YGFNGILNVVMMYGMHMITIPKFT-PETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
           YG +  L      G  ++   +F  P   ++ + K + T    VP+    L     +  E
Sbjct: 56  YGLS-QLLTAFRVGGTLVLESRFAFPRDVLKHLAKERITGFAGVPTTWAQLLRLDPLARE 114

Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT------LYTR--- 229
              S+R +T          I + ++      +     YG+TE    T      L  R   
Sbjct: 115 DFPSLRYLTNAGGALPAKTILQLRRAFPDAKLFSM--YGLTEAFRSTYLPPEELDRRPDS 172

Query: 230 --FAIPEAKL------------GSTGQLV------MLGYLKNEEATKETVDS-----EGW 264
              AIP  +L            G  G+LV      M GY  + EAT E +       E  
Sbjct: 173 IGKAIPNVELWVVDEDGNRCAPGEVGELVHRGANVMKGYWNDPEATAERLRPGPLPGEIV 232

Query: 265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
           L+TGD+   DE+GY Y V R  ++IK +G +V+P 
Sbjct: 233 LYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRVSPT 267

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  141 bits (359), Expect = 1e-39
 Identities = 78/276 (28%), Positives = 123/276 (44%), Gaps = 47/276 (17%)

Query: 58  PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD--TSQETVLSVLP 115
           P+D A++ ++SGTTG PKGV L+H N   +           +I  S   T  +  L+V+P
Sbjct: 1   PDDPALILHTSGTTGRPKGVPLTHKNLLAS---------ARNIAKSHKLTPSDRCLNVMP 51

Query: 116 FFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV 175
            FHI+G    L   ++ G  ++  PKF+   + + + KY+ T    VP++   L      
Sbjct: 52  LFHIHGLIVSLLATLLAGGSVVCPPKFSASKFWDDIAKYRVTWYSAVPTIHQILLKTAKP 111

Query: 176 TPEH-LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPE 234
            P      +R +   +AP   +++D+ +   +R  + + + YGMTE +            
Sbjct: 112 NPGKPPPRLRFIRSASAPLPPAVLDRLE---KRFGVPVLEAYGMTEAAHQIASNPLPPLV 168

Query: 235 AKLGSTGQL-----------------------------VMLGYLKNEEATKE-TVDSEGW 264
            K GS G+                              V  GYL N EA +E   D  GW
Sbjct: 169 RKPGSVGRPAGVEVAILDDDGRPLPPGQEGEIVIRGPNVTAGYLNNPEANREAFRD--GW 226

Query: 265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPYK 300
             TGD+ Y DEDGY ++  R KELI   G +++P +
Sbjct: 227 FRTGDLGYLDEDGYLFLTGRIKELINRGGEKISPRE 262

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  145 bits (369), Expect = 2e-39
 Identities = 89/300 (29%), Positives = 130/300 (43%), Gaps = 56/300 (18%)

Query: 40  FKQLVTSQPPDF----QLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPD 95
           ++ LV +           P+ +P+D+A++ Y+SGTTG PKG +L+H N   N  Q     
Sbjct: 196 WETLVDAAIGGDGSDVSHPRPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKA-- 253

Query: 96  IVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYK 155
               +P      E VL+ LP FH YG    L + +  G  ++ +P    +  ++ + K+ 
Sbjct: 254 ---WVPGLGDGPERVLAALPMFHAYGLTLCLTLAVSIGGELVLLPAPDIDLILDAMKKHP 310

Query: 156 PTILFVVPSLLLFLASHPAVTPEH---LASIREVTCGAAPATKSLIDKFKQKVQREDIT- 211
           PT L  VP L   +A       E    L+ +R    GA     S ++ +      E +T 
Sbjct: 311 PTWLPGVPPLYEKIA---EAAEERGVDLSGVRNAFSGAMALPVSTVELW------EKLTG 361

Query: 212 --IRQGYGMTETSPCTL-----------YT---------RFAIPE-----AKLGSTGQL- 243
             + +GYG+TETSP  +           Y          R   PE        G  G+L 
Sbjct: 362 GLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELL 421

Query: 244 -----VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
                V  GY    E T ++   +GW  TGDV   +EDG+  IVDR KELI   G  V P
Sbjct: 422 VRGPQVFKGYWNRPEETAKSF-LDGWFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYP 480

Length = 573

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  141 bits (359), Expect = 1e-38
 Identities = 70/264 (26%), Positives = 104/264 (39%), Gaps = 45/264 (17%)

Query: 58  PNDLAMLPYSSGTTGVPKGVKLSHNN-CAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPF 116
           P+D+A+L Y+SGTTG PKGV  +HN   A          +        T  + VL   P 
Sbjct: 92  PDDVALLLYTSGTTGEPKGVMHTHNTLLAEVRSYVERLGL--------TPDDVVLMPSPL 143

Query: 117 FHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVT 176
            HI GF   L + ++ G  ++   ++ P   +E + ++  T        L  L +     
Sbjct: 144 AHITGFLYGLELPLLLGATVVLQDRWDPARALELIREHGVTFTMGATPFLADLLAAADAA 203

Query: 177 PEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAK 236
              L S+R   CG AP  + L  +     +     + + YGMTE  P         P+ K
Sbjct: 204 GPDLPSLRVFLCGGAPVPRELARRAA---EALGAKVVRAYGMTEV-PLVTVGTPDDPDDK 259

Query: 237 LGST-------------------------GQL------VMLGYLKNEEATKETVDSEGWL 265
             +T                         G+L      + LGYL   + T E    +GW 
Sbjct: 260 RAATDGRPVPGVEVRIVDDDGNDVPPGEEGELQVRGPQLFLGYLDPPDNT-EAFTDDGWF 318

Query: 266 HTGDVAYYDEDGYFYIVDRTKELI 289
            TGD+   D DGY  I  R K++I
Sbjct: 319 RTGDLGRLDADGYLRITGRKKDII 342

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score =  142 bits (361), Expect = 1e-38
 Identities = 92/314 (29%), Positives = 127/314 (40%), Gaps = 61/314 (19%)

Query: 31  HDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQ 90
           +   K+ + +  L+ +  P    P   P DLA + Y+SGTTG PKGV LS    A   + 
Sbjct: 109 YSTLKDHYKWDDLLAATEPLQGRPLPEPEDLATIVYTSGTTGQPKGVMLSFGAFAFAAQG 168

Query: 91  CVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTP--ETYI 148
                 +  I    T  + +LS LP  HI     +    +  G  +     F    +T+ 
Sbjct: 169 -----TIEII--GLTPNDRLLSYLPLAHIAERVIVEGGSLYSGAEVF----FVESLDTFA 217

Query: 149 ECVVKYKPTILFVVPSL-LLFLASHPAVTPEH------------------------LASI 183
             + + +PT+ F VP L   F     A  P                          L   
Sbjct: 218 ADLQRARPTVFFSVPRLWTKFQQGILAKLPPEKLNLLLKIPILSSLVKKKILKGLGLDQA 277

Query: 184 REVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET-SPCTLYTRF---------AIP 233
           R    GAAP   +LI  ++    +  + I +GYGMTE  +  TL              IP
Sbjct: 278 RLAGSGAAPMPPALIAWYR----KLGLPICEGYGMTENFAYSTLNYPGDRRIGTVGKPIP 333

Query: 234 --EAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRT 285
             E K+   G++      +M GY K+ E T E    +GWLHTGD    DEDG+  I  R 
Sbjct: 334 GVELKISEDGEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRV 393

Query: 286 KELIKV-KGNQVAP 298
           KEL K  KG  VAP
Sbjct: 394 KELFKTSKGKYVAP 407

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score =  139 bits (353), Expect = 3e-37
 Identities = 82/282 (29%), Positives = 130/282 (46%), Gaps = 58/282 (20%)

Query: 57  SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPD-IVNH------IPTSDTSQET 109
            P+DLA+LPY+SGTTGVPKG              C+H    V        + ++ T +  
Sbjct: 188 GPDDLAVLPYTSGTTGVPKG--------------CMHTHRTVMANAVGSVLWSNSTPESV 233

Query: 110 VLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLL-F 168
           VL+VLP FH+ G    +N  +  G  ++ +P++  E     + +Y+ T    +P++++ F
Sbjct: 234 VLAVLPLFHVTGMVHSMNAPIYAGATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDF 293

Query: 169 LASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYT 228
           LAS P +    L+S+R +  G A   +++ ++ K   +   +   +GYG+TET   T   
Sbjct: 294 LAS-PGLAERDLSSLRYIGGGGAAMPEAVAERLK---ELTGLDYVEGYGLTETMAQTHSN 349

Query: 229 RFA--------IP---------------EAKLGSTGQL------VMLGYLKNEEATKE-- 257
                      IP               E   G  G++      V  GY    EAT E  
Sbjct: 350 PPDRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAF 409

Query: 258 -TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
             +D + +  TGD+   DE+GYF+I DR K +I   G +V P
Sbjct: 410 IEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWP 451

Length = 546

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  136 bits (346), Expect = 6e-37
 Identities = 77/276 (27%), Positives = 120/276 (43%), Gaps = 51/276 (18%)

Query: 60  DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHP-DIVNHIPTSDTSQETVLSVLPFFH 118
           D A++ Y+SGTTG PKGV L+H N A N    V             T+ + +L  LP  H
Sbjct: 89  DPALIIYTSGTTGRPKGVVLTHGNLAANARALVEAWRW--------TASDVLLHALPLHH 140

Query: 119 IYG-FNGILNVVMMYGMHMITIPKFTPETYIECVVKYKP--TILFVVPSLLLFLASHP-- 173
           ++G FN  L+  +  G  +  +P+F P+      ++  P  T+   VP++   L  H   
Sbjct: 141 VHGLFNA-LHCPLWAGASVEFLPRFDPQE--RDALRLLPRITVFMGVPTIYTRLLEHYEF 197

Query: 174 -AVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS-----PCTLY 227
                    ++R    G+A     +++++++   R   T+ + YGMTET      P    
Sbjct: 198 DDAAAAAARNLRLFVSGSAALPVPVLERWEE---RTGHTLLERYGMTETGMALSNPLDGE 254

Query: 228 TR-----FAIP--EAKL-----------GSTGQL------VMLGYLKNEEATKETVDSEG 263
            R       +P  E ++           G  G++      V   Y    EAT E    +G
Sbjct: 255 RRPGTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVRGPNVFSEYWNKPEATAEAFTEDG 314

Query: 264 WLHTGDVAYYDEDGYFYIVDRTKEL-IKVKGNQVAP 298
           W  TGDV   DEDGY+ I+ R  +  IK  G +V+ 
Sbjct: 315 WFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSA 350

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  137 bits (348), Expect = 7e-37
 Identities = 97/333 (29%), Positives = 148/333 (44%), Gaps = 71/333 (21%)

Query: 6   QLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLP 65
           QL +   K   T  +F   ++ G     ++ + G K+    Q  +F L     +++A + 
Sbjct: 94  QLDDAEVKCLITDDDFEAKLIPGISVKFAELMNGPKEEAEIQE-EFDL-----DEVATIM 147

Query: 66  YSSGTTGVPKGVKLSHNN-------CAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
           Y+SGTTG PKGV  ++ N        A+NL                T  +  L+ +P FH
Sbjct: 148 YTSGTTGKPKGVIQTYGNHWWSAVGSALNL--------------GLTEDDCWLAAVPIFH 193

Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
           I G + ++  V +YGM ++ + KF  E   + +     TI+ VV ++L  L        E
Sbjct: 194 ISGLSILMRSV-IYGMRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLL---ERLGE 249

Query: 179 HL--ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP--CTLYTRFAIPE 234
               +S R +  G  PA K L+++ K+K     I + Q YGMTET+    TL    A+  
Sbjct: 250 GTYPSSFRCMLLGGGPAPKPLLEQCKEK----GIPVYQSYGMTETASQIVTLSPEDAL-- 303

Query: 235 AKLGSTGQ-----------------------------LVMLGYLKNEEATKETVDSEGWL 265
            KLGS G+                              V  GYL  E+AT+ET    GW 
Sbjct: 304 TKLGSAGKPLFPCELKIEKDGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQD-GWF 362

Query: 266 HTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
            TGD+ Y DE+G+ Y++DR  +LI   G  + P
Sbjct: 363 KTGDIGYLDEEGFLYVLDRRSDLIISGGENIYP 395

Length = 483

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  136 bits (345), Expect = 4e-36
 Identities = 109/343 (31%), Positives = 161/343 (46%), Gaps = 59/343 (17%)

Query: 4   IPQLLEVGTKIGATLPNFRG----TIVVGGEHDKSKNI---------FGFKQ-LVTSQPP 49
           I  L+E   K+G  LP  +G    T+V     DK K +           FKQ L   +  
Sbjct: 145 IEYLIEA--KMGDLLPAAKGWLVNTVV-----DKVKKMVPAYHLPQAVPFKQALRQGRGL 197

Query: 50  DFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQ---CVHPDIVNHIPTSDTS 106
             +   +  +D+A+L Y+ GTTG+ KG  L+H N   N+ Q   C+     +  P     
Sbjct: 198 SLKPVPVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEG 257

Query: 107 QETVLSVLPFFHIYGFNGILNVVMMYGMH--MITIPKFTPETYIECVVKYKPTILFVVPS 164
           QE +++ LP +HIY F      +M+ G H  +IT P+  P  +I+ + K++ + L  + +
Sbjct: 258 QEVMIAPLPLYHIYAFTANCMCMMVSGNHNVLITNPRDIP-GFIKELGKWRFSALLGLNT 316

Query: 165 LLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP- 223
           L + L  HP       ++++    G     K+  ++++Q       TI +GYG+TETSP 
Sbjct: 317 LFVALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQLT---GCTIVEGYGLTETSPV 373

Query: 224 -CT-LYTRFA------IP--------------EAKLGSTGQL------VMLGYLKNEEAT 255
             T  Y   A      IP              E  LG  G+L      VM GY +  EAT
Sbjct: 374 ASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEAT 433

Query: 256 KETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
            E +D+EGW  TGD+A  D DG+  IVDR K+LI V G  V P
Sbjct: 434 AEALDAEGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYP 476

Length = 562

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  132 bits (335), Expect = 2e-35
 Identities = 80/280 (28%), Positives = 116/280 (41%), Gaps = 64/280 (22%)

Query: 42  QLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN-------CAVNLEQCVHP 94
           Q +    PD           A + ++SG+TG PK V  +  N        A NL   + P
Sbjct: 67  QQLADLQPDLD-------RPATIIFTSGSTGKPKAVVHTWGNHLASARGSAENL--GLTP 117

Query: 95  DIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKY 154
           D               L  LP FH+ G   I+   ++ G  ++   KF  E   E +  +
Sbjct: 118 DDNW------------LLSLPLFHVSGL-AIVMRSLLAGGALVLPDKFDAEAIAEALENH 164

Query: 155 KPTILFVVPSLLL-FLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR 213
             T + +VP+ L   L S  A      +S+R V  G AP   SL+++ +Q+     I + 
Sbjct: 165 GVTHISLVPTQLQRLLESLGARWL---SSLRAVLLGGAPIPPSLLEQARQR----GIPLY 217

Query: 214 QGYGMTETSP--CTLYTRFAIPEAKLGSTGQL----------------------VMLGYL 249
             YGMTET+    TL  +     AKLGS G+                       + LGYL
Sbjct: 218 PTYGMTETASQVATL--KPDDFLAKLGSVGKPLPGRELRIVNPQDGEILVRGPSLFLGYL 275

Query: 250 KNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELI 289
                T    D +GW HTGD+ Y D +GY Y++ R  +LI
Sbjct: 276 PQGGLTPPL-DEDGWFHTGDLGYLDAEGYLYVLGRRDDLI 314

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  132 bits (334), Expect = 1e-34
 Identities = 90/338 (26%), Positives = 141/338 (41%), Gaps = 57/338 (16%)

Query: 4   IPQLLE--VGTKIGATLPNFRGTIVVGGEHDKS----KNIFGFKQLVTSQPPDFQLPKIS 57
           +P L E   G      LP  RG + +             +    + V+ +    +   + 
Sbjct: 140 LPGLAEGQPGALACERLPELRGVVSLAPAPPPGFLAWHELQARGETVSREALAERQASLD 199

Query: 58  PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNH-----IPTSDTSQETVLS 112
            +D   + Y+SGTTG PKG  LSH+N            I+N+          T  + +  
Sbjct: 200 RDDPINIQYTSGTTGFPKGATLSHHN------------ILNNGYFVAESLGLTEHDRLCV 247

Query: 113 VLPFFHIYGFNGILNVVMMYGMHMIT-IPKFTPETYIECVVKYKPTILFVVPSLLLFLAS 171
            +P +H +G        M  G  ++     F P   ++ V + + T L+ VP++ +    
Sbjct: 248 PVPLYHCFGMVLANLGCMTVGACLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELD 307

Query: 172 HPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA 231
           HP      L+S+R      AP    ++ +   ++   ++ I   YGMTETSP +L T  A
Sbjct: 308 HPQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQI--AYGMTETSPVSLQTTAA 365

Query: 232 IP---------------EAKL----------GSTGQL------VMLGYLKNEEATKETVD 260
                            E K+          G  G+L      VM GY  N EAT E++D
Sbjct: 366 DDLERRVETVGRTQPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESID 425

Query: 261 SEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
            +GW+HTGD+A  DE GY  IV R+K++I   G  + P
Sbjct: 426 EDGWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYP 463

Length = 558

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  132 bits (333), Expect = 1e-34
 Identities = 84/275 (30%), Positives = 130/275 (47%), Gaps = 37/275 (13%)

Query: 55  KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVL 114
           +I P+D+A L Y+ GTTGV KG  L+H N   N++Q      +      +   E V++ L
Sbjct: 204 QIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQ--WLAGTGKLEEGCEVVITAL 261

Query: 115 PFFHIYGFNGILNVVMMYG--MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASH 172
           P +HI+       V M  G   H+I+ P+  P  +++ + K + T    V +L   L + 
Sbjct: 262 PLYHIFALTANGLVFMKIGGCNHLISNPRDMP-GFVKELKKTRFTAFTGVNTLFNGLLNT 320

Query: 173 PAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI 232
           P       +S++    G     +S+ +++KQ      +T+ + YG+TETSP        +
Sbjct: 321 PGFDQIDFSSLKMTLGGGMAVQRSVAERWKQVTG---LTLVEAYGLTETSPAACINPLTL 377

Query: 233 PEAK-----------------------LGSTGQL------VMLGYLKNEEATKETVDSEG 263
            E                         +G  G+L      VM GY K  E T + +D++G
Sbjct: 378 KEYNGSIGLPIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADG 437

Query: 264 WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           WLHTGD+A  DE G+ YIVDR K++I V G  V P
Sbjct: 438 WLHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYP 472

Length = 560

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  132 bits (333), Expect = 2e-34
 Identities = 87/279 (31%), Positives = 129/279 (46%), Gaps = 46/279 (16%)

Query: 54  PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSV 113
           P++ P DLA L Y+ GTTGV KG  L+H N   NLEQ        + P     +E V++ 
Sbjct: 201 PELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAK----AAYGPLLHPGKELVVTA 256

Query: 114 LPFFHIYGF--NGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLAS 171
           LP +HI+    N +L + +     +IT P+  P    E + KY  T +  V +L   L +
Sbjct: 257 LPLYHIFALTVNCLLFIELGGQNLLITNPRDIPGFVKE-LKKYPFTAITGVNTLFNALLN 315

Query: 172 HPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT---IRQGYGMTETSP---CT 225
           +        +S++    G     +++ +++        +T   + +GYG+TE SP     
Sbjct: 316 NEEFQELDFSSLKLSVGGGMAVQQAVAERW------VKLTGQYLLEGYGLTECSPLVSVN 369

Query: 226 LYTR--------FAIP------------EAKLGSTGQL------VMLGYLKNEEATKETV 259
            Y            +P            E   G  G+L      VMLGY +  EAT E V
Sbjct: 370 PYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDE-V 428

Query: 260 DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
             +GWL TGD+A  DE+G+  IVDR K++I V G  V P
Sbjct: 429 IKDGWLATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYP 467

Length = 560

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score =  131 bits (332), Expect = 2e-34
 Identities = 78/303 (25%), Positives = 108/303 (35%), Gaps = 67/303 (22%)

Query: 40  FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV------H 93
           + + V      F+   +  +D   L Y+SGTTG PKG+  SH    V             
Sbjct: 152 YDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHGDLL 211

Query: 94  PDIVNHIPTSDTSQETVLSVLPFF---HIYGFNGILN----VVMMYGMHMITIPKFTPET 146
           P       +SD          P +     Y     L      V+  G      P ++PE 
Sbjct: 212 PGDR-FWNSSD----------PGWIYGLWYSVFSPLASGATTVLYDGR-----PFYSPER 255

Query: 147 YIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQ 206
             E + KYK TI    P+ L  L       P  L+S+R +     P      + F   + 
Sbjct: 256 LWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLNPEAFEWFYSAL- 314

Query: 207 REDITIRQGYGMTETSPCTLYTRFAIPEAKLGS-----------------------TGQL 243
              + I   YG TET    +  R   P  K GS                        G+L
Sbjct: 315 --GVWILDIYGQTETGMGFIAGR---PPVKNGSSGLPLPGYAVRRVDDEGNPVPPGVGEL 369

Query: 244 V--------MLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQ 295
           V         L Y  + E  KE      W  TGD A  DEDGYF++  R+ ++IKV G +
Sbjct: 370 VVRLPWPGMALTYWNDPERYKEAY-FGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKR 428

Query: 296 VAP 298
           + P
Sbjct: 429 IGP 431

Length = 528

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  129 bits (325), Expect = 2e-33
 Identities = 85/274 (31%), Positives = 129/274 (47%), Gaps = 40/274 (14%)

Query: 56  ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLP 115
              +D+A+L Y+ GTTGV KG  L+H N   N+ QC    + +++   +   E +++ LP
Sbjct: 204 PQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQC-RALMGSNL---NEGCEILIAPLP 259

Query: 116 FFHIYGFNGILNVVMMYGMHMITIPKFTP---ETYIECVVKYKPTILFVVPSLLLFLASH 172
            +HIY F      +M+ G H I I    P      ++ + K+K +    + +L + L ++
Sbjct: 260 LYHIYAFTFHCMAMMLIGNHNILIS--NPRDLPAMVKELGKWKFSGFVGLNTLFVALCNN 317

Query: 173 PAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF-- 230
            A      ++++    G      +  +++K+        I +GYGMTETSP         
Sbjct: 318 EAFRKLDFSALKLTLSGGMALQLATAERWKEVTGCA---ICEGYGMTETSPVVSVNPSQA 374

Query: 231 ------AIP--------------EAKLGSTGQL------VMLGYLKNEEATKETVDSEGW 264
                  IP              E  LG  G+L      VM GY +  EAT E +DS+GW
Sbjct: 375 IQVGTIGIPVPSTLCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGW 434

Query: 265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           L TGD+A   EDGY  IVDR K++I V G  V P
Sbjct: 435 LKTGDIALIQEDGYMRIVDRKKDMILVSGFNVYP 468

Length = 562

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  125 bits (317), Expect = 2e-32
 Identities = 90/326 (27%), Positives = 134/326 (41%), Gaps = 48/326 (14%)

Query: 5   PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAML 64
            +L EV        P+ R  IVVGG    + +   + QL+ +   + +    S +D+A  
Sbjct: 110 EELWEVLKPALQKDPHLRHVIVVGGAGPGALS---YAQLIATAAEELEAAATSADDMAFW 166

Query: 65  PYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG 124
            YSSG+TG PKGV   H++  V  E       V  I    T  + V S    F  YG   
Sbjct: 167 LYSSGSTGRPKGVVHLHHDMLVTAEAYAKN--VLGI----TEDDVVFSAAKLFFAYGLGN 220

Query: 125 ILNVVMMYGMHMITIPKF-TPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASI 183
            L   +  G   + +P+  TP+     + +YKPT+ F VP+L   + + P      L+S+
Sbjct: 221 GLYFPLSVGATTVLMPERPTPDAVFATIERYKPTVFFGVPTLYAAMLAAPEKPERDLSSL 280

Query: 184 REVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEA-KLGSTGQ 242
           R            +  ++K   +   + I  G G TE     L  R   P A K G++G+
Sbjct: 281 RLCVSAGEALPAEIGYRWK---ELFGLEILDGIGSTEMLHIFLSNR---PGAVKYGTSGK 334

Query: 243 LV------------------------------MLGYLKNEEATKETVDSEGWLHTGDVAY 272
            V                                GY    E T+ET   E W  TGD  Y
Sbjct: 335 PVPGYEVKLVDEDGEEVADGEIGELWVRGDSSAAGYWNRREKTRETFVGE-WTRTGDKYY 393

Query: 273 YDEDGYFYIVDRTKELIKVKGNQVAP 298
            DEDGY++   R+ +++KV G  V+P
Sbjct: 394 RDEDGYYWYCGRSDDMLKVSGIWVSP 419

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  125 bits (315), Expect = 4e-32
 Identities = 93/320 (29%), Positives = 141/320 (44%), Gaps = 51/320 (15%)

Query: 5   PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDL-AM 63
             L  V T +   +P     +V GG  D   ++ G++ L+    P      I PND  A+
Sbjct: 122 AALAPVATAVRDIVPLLSTVVVAGGSSDD--SVLGYEDLLAEAGPAHAPVDI-PNDSPAL 178

Query: 64  LPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN 123
           + Y+SGTTG PKG  L+H N       C+     N     D + +     +P FHI G  
Sbjct: 179 IMYTSGTTGRPKGAVLTHANLTGQAMTCLR---TNGA---DINSDVGFVGVPLFHIAGIG 232

Query: 124 GILNVVMMYGMHMITIP--KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLA 181
            +L  +++ G   +  P   F P   ++ +   K T +F+VP+    + +     P  LA
Sbjct: 233 SMLPGLLL-GAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPAQWQAVCAEQQARPRDLA 291

Query: 182 SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP--CTLYTRFAIPEAKLGS 239
            +R ++ GAAPA+ +L+ +        +  I   +G TE SP  C L    AI   KLGS
Sbjct: 292 -LRVLSWGAAPASDTLLRQMAATF--PEAQILAAFGQTEMSPVTCMLLGEDAI--RKLGS 346

Query: 240 TGQLV------------------------------MLGYLKNEEATKETVDSEGWLHTGD 269
            G+++                              M GY  N EAT E     GW H+GD
Sbjct: 347 VGKVIPTVAARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAG-GWFHSGD 405

Query: 270 VAYYDEDGYFYIVDRTKELI 289
           +   DE+GY ++VDR K++I
Sbjct: 406 LVRQDEEGYVWVVDRKKDMI 425

Length = 542

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  125 bits (316), Expect = 5e-32
 Identities = 103/339 (30%), Positives = 149/339 (43%), Gaps = 76/339 (22%)

Query: 4   IPQL--LEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVT--SQPPDFQLPKI--- 56
            P+L   E G    A LP  R  I +G E  K   +  F +L+       D +L      
Sbjct: 138 APELATCEPGQLQSARLPELRRVIFLGDE--KHPGMLNFDELLALGRAVDDAELAARQAT 195

Query: 57  -SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVN---HIPTSD--TSQETV 110
             P+D   + Y+SGTTG PKG  L+H N            I+N    I  +   T ++ +
Sbjct: 196 LDPDDPINIQYTSGTTGFPKGATLTHRN------------ILNNGYFIGEAMKLTEEDRL 243

Query: 111 LSVLPFFHIYGFN-GILNVVMMYGMHMITI-PKFTPETYIECVVKYKPTILFVVPSLLLF 168
              +P +H +G   G L  V  +G  M+     F P   +  V + + T L+ VP++  F
Sbjct: 244 CIPVPLYHCFGMVLGNLACVT-HGATMVYPGEGFDPLATLAAVEEERCTALYGVPTM--F 300

Query: 169 LA--SHPAVTPEHLASIRE-VTCGA---APATKSLIDKFKQKVQREDITIRQGYGMTETS 222
           +A   HP      L+S+R  +  G+       K +IDK        ++TI   YGMTETS
Sbjct: 301 IAELDHPDFARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHMS----EVTI--AYGMTETS 354

Query: 223 PCTLYTRFAIP---------------EAKL-----------GSTGQL------VMLGYLK 250
           P +  TR   P               E K+           G  G+L      VM GY  
Sbjct: 355 PVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWN 414

Query: 251 NEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELI 289
           + E T E +D++GW+HTGD+A  DE+GY  IV R K++I
Sbjct: 415 DPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMI 453

Length = 559

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  123 bits (309), Expect = 2e-31
 Identities = 93/333 (27%), Positives = 139/333 (41%), Gaps = 61/333 (18%)

Query: 6   QLLEVGTKIGATLPNFRGTI-----VVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPND 60
           QL + GT +      F+        V   +   S  I   K++   +  +F     + + 
Sbjct: 95  QLKDSGTTVLFVEKTFQNMALSMQKVSYVQRVIS--ITSLKEIEDRKIDNFVEK--NESA 150

Query: 61  LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD-TSQETVLSVLPFFHI 119
             ++ Y+SGTTG PKG  L+  N   N         +N+    D T  +  + +LP FHI
Sbjct: 151 SFIICYTSGTTGKPKGAVLTQENMFWN--------ALNNTFAIDLTMHDRSIVLLPLFHI 202

Query: 120 YGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEH 179
            G        +  G  +I   KF P   +  + K+K T++  VP++   L +       +
Sbjct: 203 GGIGLFAFPTLFAGGVIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTN 262

Query: 180 LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEA---- 235
           L S+R    G AP  + L+ +F            QG+GMTETSP    T F + E     
Sbjct: 263 LQSVRWFYNGGAPCPEELMREF----IDRGFLFGQGFGMTETSP----TVFMLSEEDARR 314

Query: 236 KLGSTGQL------------------------------VMLGYLKNEEATKETVDSEGWL 265
           K+GS G+                               VM  Y    +AT+ET+  +GWL
Sbjct: 315 KVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGWL 373

Query: 266 HTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
            TGD+A  DEDG+ YIV R KE+I   G  + P
Sbjct: 374 CTGDLARVDEDGFVYIVGRKKEMIISGGENIYP 406

Length = 496

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  123 bits (310), Expect = 2e-31
 Identities = 82/293 (27%), Positives = 119/293 (40%), Gaps = 61/293 (20%)

Query: 43  LVTSQPPDFQ-LPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIP 101
           L+    PD   +P     D   L Y+SGTTG PKGV  +H    +N         + ++ 
Sbjct: 150 LLAGGDPDPLPIPPDDEWDPISLNYTSGTTGNPKGVVYTHRGAYLN--------ALGNVI 201

Query: 102 TSDTSQETV-LSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILF 160
                   V L  LP FH  G+     +  + G H + + K       + + K+K T L 
Sbjct: 202 EWGMPDRPVYLWTLPMFHCNGWCFPWAITAVGGTH-VCLRKVDAPAIYDLIEKHKVTHLC 260

Query: 161 VVPSLLLFLASHPAVTPEHLAS-IREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMT 219
             P++L  LA+ P      L   +R +T GA P   ++I    +K++     +   YG+T
Sbjct: 261 GAPTVLNMLANAPEADKLPLPRPVRVMTAGAPP-PPAVI----KKMEELGFEVTHVYGLT 315

Query: 220 ETSP----CTLYTRF-AIP---EAKL----------------------------GST--- 240
           ET      C     + A+P    A+L                            G T   
Sbjct: 316 ETYGPITVCEWKPEWDALPAEERARLKARQGVRYVGLEEVDVVDPETMKDVPRDGKTIGE 375

Query: 241 ----GQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELI 289
               G  VM GY KN EAT+E     GW H+GD+A    DGY  I DR+K++I
Sbjct: 376 IVMRGNTVMKGYYKNPEATEEAFAG-GWFHSGDLAVVHPDGYIEIKDRSKDII 427

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  122 bits (307), Expect = 5e-31
 Identities = 80/277 (28%), Positives = 114/277 (41%), Gaps = 51/277 (18%)

Query: 58  PNDLAMLPYSSGTTGVPKGVKLSH-NNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPF 116
           P D+A L Y+ GTTG PKGV  +H +   +   Q    +               L   P 
Sbjct: 167 PPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEWEWPADP--------RFLMCTPL 218

Query: 117 FHIYGFNGILNV-VMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV 175
            H     G   +  ++ G  +I + KF P   +  + + + T  F+VP+++  L  HP +
Sbjct: 219 SHA---GGAFFLPTLLRGGTVIVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDL 275

Query: 176 TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTR------ 229
               L+S+  V  GA+P +     +  + ++R      Q YG TE      Y R      
Sbjct: 276 RTRDLSSLETVYYGASPMSPV---RLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDP 332

Query: 230 ----------FAIP------------EAKLGSTGQ------LVMLGYLKNEEATKETVDS 261
                        P            E   G  G+      LVM GY    E T E    
Sbjct: 333 DDPKRLTSCGRPTPGLRVALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-R 391

Query: 262 EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           +GWLHTGDVA  DEDG++YIVDR K++I   G  V P
Sbjct: 392 DGWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFP 428

Length = 524

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  121 bits (305), Expect = 9e-31
 Identities = 85/277 (30%), Positives = 119/277 (42%), Gaps = 51/277 (18%)

Query: 47  QPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVN---LEQCVHPDIVNHIPTS 103
            P DF+      +DLA + Y+SGTTG  KG  LSH N   N   L               
Sbjct: 144 APDDFETVPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYWRF--------- 194

Query: 104 DTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKP--TILFV 161
            T  + ++  LP FH +G     NV ++ G  MI +PKF P+     V+   P  T++  
Sbjct: 195 -TPDDVLIHALPIFHTHGLFVATNVALLAGASMIFLPKFDPDA----VLALMPRATVMMG 249

Query: 162 VPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET 221
           VP+    L   P +T E  A +R    G+AP    L +  ++  +R    I + YGMTET
Sbjct: 250 VPTFYTRLLQEPRLTREAAAHMRLFISGSAPL---LAETHREFQERTGHAILERYGMTET 306

Query: 222 -----SPCTLYTR-----FAIPEAKL-------------GSTGQL------VMLGYLKNE 252
                +P     R     F +P   L             G  G +      V  GY +  
Sbjct: 307 NMNTSNPYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMP 366

Query: 253 EATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELI 289
           E T E   ++G+  TGD+   DE GY +IV R K+LI
Sbjct: 367 EKTAEEFRADGFFITGDLGKIDERGYVHIVGRGKDLI 403

Length = 504

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  117 bits (295), Expect = 2e-29
 Identities = 64/273 (23%), Positives = 108/273 (39%), Gaps = 47/273 (17%)

Query: 60  DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV-LSVLPFFH 118
           D+A+   S GTTG+PK +  +HN+   +                     TV L+VLP  H
Sbjct: 140 DVALFQLSGGTTGLPKLIPRTHNDYLYSARASAE--------ACGLDPGTVYLAVLPAAH 191

Query: 119 IYGFNG-ILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTP 177
            +  +   L   ++ G  ++     +P+     + + K T   +VP+LL           
Sbjct: 192 NFTLSSPGLLGALLAGGTVVLHHPPSPDVAFPLIEREKVTHTALVPALLNLWLEAAEWDQ 251

Query: 178 EHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP---- 233
             L+S+R +  G AP +  L  + ++   R    ++Q +GM E      YTR   P    
Sbjct: 252 ADLSSLRVIQVGGAPLSPELARRVEE---RLGCPLQQVFGMAEGL--VNYTRLDDPPDVI 306

Query: 234 ------------EAKL----------GSTGQL------VMLGYLKNEEATKETVDSEGWL 265
                       E ++          G  G+L       + GY +  E        +G+ 
Sbjct: 307 MRTQGRPISPADEIRIVDDQGEPVPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFY 366

Query: 266 HTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
            TGD+   D DGY+ +V R K+ I   G +++P
Sbjct: 367 RTGDLVRIDADGYYRVVGRIKDQINRGGEKISP 399

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  112 bits (283), Expect = 2e-28
 Identities = 70/287 (24%), Positives = 109/287 (37%), Gaps = 64/287 (22%)

Query: 58  PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV-----HPDIVNHIPTSDTSQETVLS 112
           P+DLA   ++ GTTG PK  + SH N   N           P             + +L+
Sbjct: 1   PDDLAAYFHTGGTTGAPKLARHSHRNEVANAWMAALLSGLGPG------------DVLLN 48

Query: 113 VLPFFHIYGFNGILNVVMMYGMHMI--TIPKFTPETYI----ECVVKYKPTILFVVPSLL 166
            LP FH+ G        +  G  ++  T   F     +    + V +Y+ T+L  VP++L
Sbjct: 49  GLPLFHVGGAIVTGLAPLARGATVVLPTPSGFRNPAVVANFWKIVERYRVTLLSAVPTVL 108

Query: 167 LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTL 226
             L   P    + ++S+R    GAAP    +  +F+       + + +GYGMTE +    
Sbjct: 109 AALLQVPLGDAD-ISSLRYALTGAAPLPVEVARRFEA---VTGVPVVEGYGMTEGT-GVS 163

Query: 227 YTRFAIPEAKLGSTGQL-----------------------------------VMLGYLKN 251
                    + GS G                                     V  GYL N
Sbjct: 164 AINPRGGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGVLAIRGPNVFPGYL-N 222

Query: 252 EEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           +         +GWL+TGD+   D DGY ++  R K+LI   G+ + P
Sbjct: 223 DAHNAGARLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNIDP 269

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  112 bits (283), Expect = 1e-27
 Identities = 93/395 (23%), Positives = 148/395 (37%), Gaps = 111/395 (28%)

Query: 22  RGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSH 81
            G    GG  D       F     +        +++ +DLA + Y+SGT  +PKG  L+H
Sbjct: 141 GGREAPGGWLD-------FADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTH 193

Query: 82  NNCAVNLEQCVHPDIVNHIPTSDTSQETV-LSVLPFFHIYGFNGILNVVMMYGMHMITIP 140
                     +  + V+ I   D S + + L  LP +H    +  L   +  G   + + 
Sbjct: 194 -------RALIA-EYVSCIVAGDMSADDIPLHALPLYHCAQLDVFLGPYLYVGATNVILD 245

Query: 141 KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDK 200
              PE  +  +   + T  F  P++ + L  HP      L+S+R+   GA+     ++ +
Sbjct: 246 APDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPVEVLKE 305

Query: 201 FKQKVQREDITIRQGYGMTETSPCTLYTRFAIPE---AKLGSTGQLV------------- 244
            ++++    +     YG TE +P  L T    PE    + GS G+ V             
Sbjct: 306 LRERL--PGLRFYNCYGQTEIAP--LATVLG-PEEHLRRPGSAGRPVLNVETRVVDDDGN 360

Query: 245 -----------------MLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKE 287
                            MLGY  + E T E     GW H+GD+   DE+GY  +VDR K+
Sbjct: 361 DVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYITVVDRKKD 419

Query: 288 LIKVKGNQVA------------------------PY------------------------ 299
           +IK  G  VA                        P                         
Sbjct: 420 MIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDELIA 479

Query: 300 ---KKLAG-----GVKFLETIPRNPAGKVLRNELK 326
               +LAG      V F++ +PRNP+GK+L+ EL+
Sbjct: 480 HCRARLAGFKVPKRVIFVDELPRNPSGKILKRELR 514

Length = 523

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score =  111 bits (278), Expect = 4e-27
 Identities = 84/295 (28%), Positives = 132/295 (44%), Gaps = 41/295 (13%)

Query: 37  IFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDI 96
           I  +   V       + P ++P+D+A+L Y+ GTTG+PKG  L+H     NL   V    
Sbjct: 170 IVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHG----NLTSAVSIYD 225

Query: 97  VNHIPTSDTSQ--ETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKY 154
           V   P+  T    E V+ VLP FHIY    IL   +  G  +    +F        + + 
Sbjct: 226 VWGKPSRATRGDVERVICVLPLFHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEK 285

Query: 155 KPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ 214
           + T+   VP++ + LA+ P++    L+S+  +  G AP    + + F++K   +   ++ 
Sbjct: 286 RATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVEVANFFERKTGLK---LKS 342

Query: 215 GYGMTET-SPCTLY---------------------------TRFAIPEAKLGS---TGQL 243
           G+GMTET SP T +                               +P  ++G     G  
Sbjct: 343 GWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPN 402

Query: 244 VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           V  GY    E + E    + +L TGD+ Y D DGYF++VDR K++I   G  V P
Sbjct: 403 VTRGYWNRPEESAEAFVGDRFL-TGDIGYMDTDGYFFLVDRKKDMIISGGFNVYP 456

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  109 bits (274), Expect = 2e-26
 Identities = 79/319 (24%), Positives = 120/319 (37%), Gaps = 64/319 (20%)

Query: 18  LPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPD--FQLPKISPNDLAMLPYSSGTTGVPK 75
           LP  +   V          I  F   +  QP D  F    I P+D+A   ++ GTTG+PK
Sbjct: 170 LPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTGGTTGMPK 229

Query: 76  GVKLSHNNCAVNLEQCVHPDIVN----HIPTSDTSQETVLSVLPFFHIYGFNGILNVVMM 131
             + +H N           ++ N     +       +TV   LP FH+          + 
Sbjct: 230 LAQHTHGN-----------EVANAWLGALLLGLGPGDTVFCGLPLFHVNALLVTGLAPLA 278

Query: 132 YGMHMI--TIPKFTPETYI----ECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIRE 185
            G H++  T   +     I    + V +Y+   L  VP++   L   P V    ++S+R 
Sbjct: 279 RGAHVVLATPQGYRGPGVIANFWKIVERYRINFLSGVPTVYAALLQVP-VDGHDISSLRY 337

Query: 186 VTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQL-- 243
             CGAAP    +  +F+       + I +GYG+TE + C         E ++GS G    
Sbjct: 338 ALCGAAPLPVEVFRRFEAAT---GVRIVEGYGLTEAT-CVSSVNPPDGERRIGSVGLRLP 393

Query: 244 ---------------------------------VMLGYLKNEEATKETVDSEGWLHTGDV 270
                                            V  GYL      K     +GWL+TGD+
Sbjct: 394 YQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYL-EAAHNKGLWLEDGWLNTGDL 452

Query: 271 AYYDEDGYFYIVDRTKELI 289
              D DGYF++  R K+LI
Sbjct: 453 GRIDADGYFWLTGRAKDLI 471

Length = 632

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  106 bits (266), Expect = 2e-25
 Identities = 78/296 (26%), Positives = 117/296 (39%), Gaps = 68/296 (22%)

Query: 41  KQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN--------CAV-NLEQC 91
            Q++    P         ++LA + ++SGT G+PKGV L+HNN        CA  NL   
Sbjct: 169 SQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASERAYCARLNL--- 225

Query: 92  VHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECV 151
                        T Q+  +   P  H  GF   +    + G   + +  FTP+  +  +
Sbjct: 226 -------------TWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALL 272

Query: 152 VKYKPT-ILFVVP---SLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQR 207
            + + T +L   P    LL  L   PA     L+++R   CG     K +     ++ Q+
Sbjct: 273 EQQRCTCMLGATPFIYDLLNLLEKQPA----DLSALRFFLCGGTTIPKKVA----RECQQ 324

Query: 208 EDITIRQGYGMTETSP--------CTLYT-------------------RFAIPEAKLG-- 238
             I +   YG TE+SP                                R  +P    G  
Sbjct: 325 RGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCEGEE 384

Query: 239 -STGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
            S G  V +GYL   E T   +D EGW ++GD+   DE GY  I  R K++I V+G
Sbjct: 385 ASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDII-VRG 439

Length = 547

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score =  105 bits (265), Expect = 2e-25
 Identities = 81/328 (24%), Positives = 126/328 (38%), Gaps = 87/328 (26%)

Query: 25  IVVGGEHDKS-KNIFGFKQLVTSQPPDF-QLPKISPNDLAMLPYSSGTTGVPKGVKLSHN 82
           I +      +   +  F QL   QP      P +S +D A + ++SGTT  PKGV ++H 
Sbjct: 137 ICLTRVALPADDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHY 196

Query: 83  N-----------CAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVM- 130
           N           CA+                     +  L+V+P FHI   +      M 
Sbjct: 197 NLRFAGYYSAWQCAL------------------RDDDVYLTVMPAFHI---DCQCTAAMA 235

Query: 131 --MYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTC 188
               G   + + K++   +   V KY+ TI   +P ++  L   P    +    +REV  
Sbjct: 236 AFSAGATFVLLEKYSARAFWGQVCKYRATITECIPMMIRTLMVQPPSANDRQHCLREVMF 295

Query: 189 GAAPATKSLIDKFKQK-VQREDITIRQGYGMTET-------------------SPCTLYT 228
                   L D+ K    +R  + +   YGMTET                    P   Y 
Sbjct: 296 YLN-----LSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCY- 349

Query: 229 RFAIPEAKL-------------------GSTGQLVMLGYLKNEEATKETVDSEGWLHTGD 269
                EA++                   G  G+ +   Y  + +AT + ++++GWLHTGD
Sbjct: 350 -----EAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGD 404

Query: 270 VAYYDEDGYFYIVDRTKELIKVKGNQVA 297
             Y DE+G+FY VDR   +IK  G  V+
Sbjct: 405 TGYVDEEGFFYFVDRRCNMIKRGGENVS 432

Length = 517

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score =  104 bits (261), Expect = 4e-25
 Identities = 73/276 (26%), Positives = 113/276 (40%), Gaps = 47/276 (17%)

Query: 56  ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLP 115
              +D+A   Y+SGTTG PKGV   H +  +   +    +++   P      + + S   
Sbjct: 88  TEADDIAYWLYTSGTTGKPKGVMHRHRD-PLTFAEAFARELLGLQP-----GDRIFSSSK 141

Query: 116 FFHIYGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKPTILFVVPSLLLFLASHPA 174
            F  YG    L   +  G   + +P   TPE  ++ + +++PT+LF VP+L   L    A
Sbjct: 142 LFFAYGLGNSLLFPLFSGASAVLLPGWPTPEAVLDLLARHRPTVLFGVPALYRALLESGA 201

Query: 175 VTPEHLASIRE-VTCGAA-PATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI 232
            +     S+R  V+ G A PA        ++  +   I I  G G TE     +  R   
Sbjct: 202 GSAPLFRSVRLCVSAGEALPA-----GLAERWAEATGIEILDGIGSTEVLHIFISNRPG- 255

Query: 233 PEAKLGSTGQLV------------------------------MLGYLKNEEATKETVDSE 262
             A+ G+TG+ V                                GY    E T+ T+  +
Sbjct: 256 -AARPGTTGRPVPGYEARLVDESGREVPAGTVGDLWVRGPSLAPGYWNLPEKTQRTL-RD 313

Query: 263 GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           GWL TGD    D DG++    R  ++IKV G  V+P
Sbjct: 314 GWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSP 349

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score =  104 bits (260), Expect = 5e-25
 Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 58/284 (20%)

Query: 45  TSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN---CAVNLEQCVHPDIVNHIP 101
           TS    F + +I     A L ++SGTTG PK V  +  N    AV  ++ +         
Sbjct: 102 TSLSASFNMDQI-----ATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENLGF------- 149

Query: 102 TSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFV 161
              T  +  L  LP +HI G   IL   ++ G  +  + KF     +E +   + T + +
Sbjct: 150 ---TEDDNWLLSLPLYHISGL-SILFRWLIEGATLRIVDKFN--QLLEMIANERVTHISL 203

Query: 162 VPSLL--LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMT 219
           VP+ L  L               +R++  G +     LI    ++ Q+  + I   YGMT
Sbjct: 204 VPTQLNRLLDEGGHNEN------LRKILLGGSAIPAPLI----EEAQQYGLPIYLSYGMT 253

Query: 220 ETSP--CTLYTRF----------------AIPEAKLGSTGQL------VMLGYLKNEEAT 255
           ET     T                      I        G++      +M GYL   E T
Sbjct: 254 ETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNKEGHGEIMVKGANLMKGYLYQGELT 313

Query: 256 KETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
               + +GW +TGD+   D +G+ Y++ R  +LI   G  + P 
Sbjct: 314 -PAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGENIYPE 356

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score =  102 bits (257), Expect = 2e-24
 Identities = 81/305 (26%), Positives = 130/305 (42%), Gaps = 63/305 (20%)

Query: 40  FKQLVTSQPPDFQLP----KISPNDLAMLPYSSGTTGVPKGVK------LSHNNCAVNLE 89
           F + + +  PDF+ P        +D+ ++ ++SGTTG+PK V+      L H   A    
Sbjct: 162 FDKEIENASPDFERPTGNDATCNDDILLVYFTSGTTGMPKMVEHDHTYPLGHIVTA-KYW 220

Query: 90  QCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIE 149
           Q V    + H+  +DT     +    +  +YG       V +Y        KF P+  +E
Sbjct: 221 QNVKEGGL-HLTVADTGWGKAV----WGKLYGQWIAGAAVFVYDYD-----KFDPKNLLE 270

Query: 150 CVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQRED 209
            + KY  T     P++  FL     ++   L+S+R  T    P    + + FK+K     
Sbjct: 271 KIEKYGVTTFCAPPTIYRFLI-KEDLSKYDLSSLRYCTTAGEPLNPEVFNTFKEKT---G 326

Query: 210 ITIRQGYGMTETSPCTLYTRFAIPEAKLGS------------------------TGQLVM 245
           I + +G+G TET+       F   E K GS                         G++V+
Sbjct: 327 IKLMEGFGQTETTLTI--ATFPWMEPKPGSMGKPSPGYDIDIIDPDGKSCEVGEEGEIVI 384

Query: 246 -----------LGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGN 294
                      +GY ++ E T E V  +G+ HTGD A+ DEDGY + V R  +LIK  G 
Sbjct: 385 RTSDGKPLGLFMGYYRDPERTAE-VWHDGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGY 443

Query: 295 QVAPY 299
           ++ P+
Sbjct: 444 RIGPF 448

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score =  100 bits (252), Expect = 7e-24
 Identities = 71/285 (24%), Positives = 104/285 (36%), Gaps = 62/285 (21%)

Query: 57  SPNDLAMLPYSSGTTGVPKGVKLSHNNCA-----VNLEQCVHPDIVNHIPTSDTS-QETV 110
           S +D A+L ++SGTTG+PK V  +H+              + PD + H   +D    +  
Sbjct: 79  SADDPALLYFTSGTTGLPKMVLHTHSYPLGHLVTGAYWLDLRPDDL-HWTIADPGWAKGA 137

Query: 111 LSVL--PFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLF 168
            S L  P+       G    V           +F  E  +E + +Y  T     P+    
Sbjct: 138 WSSLFAPWLL-----GAAVFVYHG-------RRFDAERTLELLERYGVTTFCAPPTAYRM 185

Query: 169 LASHPAVTPEH--LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET----- 221
           L             + +R V     P    +ID ++       + IR GYG TET     
Sbjct: 186 LL---QQDLSSYDFSHLRHVVSAGEPLNPEVIDWWRAATG---LPIRDGYGQTETGLLVA 239

Query: 222 -SPCTL----YTRFAIP------------EAKLGSTGQLV----------MLGYLKNEEA 254
             P             P            E   G  G +             GYLK+ E 
Sbjct: 240 NFPGMEVKPGSMGRPAPGYRVAIIDDEGNELPPGEEGDIAVRVKPRPPGLFRGYLKDPEK 299

Query: 255 TKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
           T+ T+    W  TGD A  DEDGYF+ V R  ++IK  G ++ P+
Sbjct: 300 TEATI-RGDWYLTGDRAIKDEDGYFWFVGRADDVIKSSGYRIGPF 343

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  100 bits (252), Expect = 1e-23
 Identities = 81/285 (28%), Positives = 119/285 (41%), Gaps = 47/285 (16%)

Query: 51  FQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQC---VHPDIVNHIPTSDTSQ 107
           F+  K+ P+D+A L Y+ GTTGV KG  L H N   N+ Q    + P            Q
Sbjct: 196 FKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKK---PRPDQ 252

Query: 108 ETVLSVLPFFHIYGF--NGILNVVMMYGMHMITIPKFTPE---TYIECVVKYKPTILFVV 162
              +  LP +HI+     G+L   M  G   I IP   P     +I+ + KY+  I   V
Sbjct: 253 LNFVCALPLYHIFALTVCGLLG--MRTGGRNILIP--NPRDIPGFIKELKKYQVHIFPAV 308

Query: 163 PSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS 222
            +L   L ++P       + +  V  G   A +  + +   ++    IT  +GYG++ETS
Sbjct: 309 NTLYNALLNNPDFDKLDFSKLI-VANGGGMAVQRPVAERWLEMTGCPIT--EGYGLSETS 365

Query: 223 PCTLYTRFAIPE-----------------------AKLGSTGQL------VMLGYLKNEE 253
           P          E                         LG  G++      VM GY    +
Sbjct: 366 PVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEPGEICIRGPQVMAGYWNRPD 425

Query: 254 ATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
            T + + ++G+  TGDV   DE GY  IVDR K++I V G  V P
Sbjct: 426 ETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYP 470

Length = 557

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score =  100 bits (251), Expect = 2e-23
 Identities = 86/328 (26%), Positives = 128/328 (39%), Gaps = 61/328 (18%)

Query: 13  KIGATLPNFRGTIVVGG-EH---DKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSS 68
           KI   LP+    +V+    H      KN   +++ +     DF       N  A + Y+S
Sbjct: 127 KIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIAEADGDFAWKTFDENTAAGMCYTS 186

Query: 69  GTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQ-ETVLSVLPFFHIYGFNGILN 127
           GTTG PKGV  SH +        +H  + N+     TS  +T+L V+P FH   + GI  
Sbjct: 187 GTTGDPKGVLYSHRS------NVLHALMANNGDALGTSAADTMLPVVPLFHANSW-GIAF 239

Query: 128 VVMMYGMHMITI-PKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREV 186
                G  ++    K    +  E +   K T    VP++ L L  +       L  ++ V
Sbjct: 240 SAPSMGTKLVMPGAKLDGASVYELLDTEKVTFTAGVPTVWLMLLQYMEKEGLKLPHLKMV 299

Query: 187 TCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP----CTLYTRF--AIPEAKL--- 237
            CG +   +S+I  F    +   + +R  +GMTE SP      L   F     +A+L   
Sbjct: 300 VCGGSAMPRSMIKAF----EDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVL 355

Query: 238 -------------------------GST-------GQLVMLGYLKNEEATKETVDSEGWL 265
                                    G T       G  V   Y +      E +D +G+ 
Sbjct: 356 QKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYR---VDGEILDDDGFF 412

Query: 266 HTGDVAYYDEDGYFYIVDRTKELIKVKG 293
            TGDVA  D  GY  I DR+K++IK  G
Sbjct: 413 DTGDVATIDAYGYMRITDRSKDVIKSGG 440

Length = 542

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score =  100 bits (250), Expect = 3e-23
 Identities = 77/295 (26%), Positives = 122/295 (41%), Gaps = 67/295 (22%)

Query: 52  QLPKISPNDLAMLPYSSGTTGVPKGVKLSH--------NNCAVNLEQCVHPDIVNHIPTS 103
            LP  + + LA L Y+ GTTG+PKG + +            AV +               
Sbjct: 202 PLPPPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAVVG------------- 248

Query: 104 DTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVP 163
                  LS LP F I G N  L   +  G  ++ + ++    ++  V +Y+ T   ++ 
Sbjct: 249 -GEDSVFLSFLPEFWIAGENFGLLFPLFSGATLVLLARWDAVAFMAAVERYRVTRTVMLV 307

Query: 164 SLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT---IRQG-YGMT 219
              + L  HP      L+S+R+V        K L   ++Q+ +   +T   + +  +GMT
Sbjct: 308 DNAVELMDHPRFAEYDLSSLRQV--RVVSFVKKLNPDYRQRWR--ALTGSVLAEAAWGMT 363

Query: 220 ETSPCTLYTR-----------------FAIP--EAK-----------LGSTGQLV----- 244
           ET  C  +T                    +P  E K           LG+ G++V     
Sbjct: 364 ETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPS 423

Query: 245 -MLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
            + GY    EAT E +  +GWLHTGD+   DE G+ + + R KE++KV G  V P
Sbjct: 424 LLKGYWNKPEATAEAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFP 477

Length = 567

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 95.9 bits (239), Expect = 4e-22
 Identities = 65/286 (22%), Positives = 107/286 (37%), Gaps = 66/286 (23%)

Query: 58  PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF 117
            +D A+L Y+SGTTG PKG    H              ++ H+P  +   E        F
Sbjct: 87  SDDPAILIYTSGTTGPPKGALHGHRV------------LLGHLPGVELYFELAPRPGDVF 134

Query: 118 H-------IYGFNGILNVVMMYGMHMITIP--KFTPETYIECVVKYKPTILFVVPSLLLF 168
                   I G   +L   + +G+ ++     +F PE     + +Y  T  F+ P+ L  
Sbjct: 135 WTPADWAWIGGLLDVLLPALYFGVPVVAYRMQRFDPERAFALMRRYGVTNAFLPPTALKM 194

Query: 169 LASHPAVTPEHLASIREVTCGAAPATKSLI----DKFKQKVQREDITIRQGYGMTETSPC 224
           +    +    +   +R V  G     + L+    D+         +T+ + YG TE +  
Sbjct: 195 MRRVGSERARYDLRLRAVASGGESLGEELLEWARDELG-------LTVNEFYGQTEAN-L 246

Query: 225 TLYTRFAIPEAKLGSTGQ--------------------------------LVMLGYLKNE 252
            +    A+  A+ GS G+                                ++ LGY  N 
Sbjct: 247 VVGNCAALGPARPGSMGKPVPGHEVAVVDDAGRPVPPGEVGEIAVKRPDPVMFLGYWNNP 306

Query: 253 EATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           EAT     +  WL TGD+   D DGY +   R  ++IK  G ++ P
Sbjct: 307 EATAAKF-AGDWLLTGDLGRRDADGYLWFKGRADDVIKSSGYRIGP 351

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score = 96.4 bits (240), Expect = 4e-22
 Identities = 73/305 (23%), Positives = 112/305 (36%), Gaps = 69/305 (22%)

Query: 39  GFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVN 98
            F     +  P    P I P  ++++ ++SGT+G PKGV LS  N    L+Q  H    N
Sbjct: 116 AFIASADALEPADT-PSIPPERVSLILFTSGTSGQPKGVMLSERN----LQQTAH----N 166

Query: 99  HIPTSDTSQETV-LSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIE-------C 150
                     +  L   P FHI G    +  V+  G  ++    F P+  +         
Sbjct: 167 FGVLGRVDAHSSFLCDAPMFHIIGLITSVRPVLAVGGSILVSNGFEPKRTLGRLGDPALG 226

Query: 151 VVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAP-ATKSLIDKFKQKVQRED 209
           +  Y     F VP +     + P      L  +  +  G AP A + ++      +   D
Sbjct: 227 ITHY-----FCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDDGIPMVD 281

Query: 210 ITIRQGYGMTETSPCTLYTRFAIP------EAKLGSTG------QL-------------- 243
                G+GM+E       T F +        AK G+ G      Q               
Sbjct: 282 -----GFGMSEAG-----TVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGV 331

Query: 244 ----------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
                     +  GY +  +AT      +GW  TGD+A  D DG+F++VDR K++    G
Sbjct: 332 PGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGG 391

Query: 294 NQVAP 298
             V P
Sbjct: 392 ENVYP 396

Length = 488

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 96.2 bits (240), Expect = 4e-22
 Identities = 84/300 (28%), Positives = 124/300 (41%), Gaps = 72/300 (24%)

Query: 50  DFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD----- 104
             + P+  P+  A++ Y+SGTTG PKGV LS    A +L               D     
Sbjct: 119 WHRYPEPDPDAPALIVYTSGTTGPPKGVVLSRRAIAADL---------------DALAEA 163

Query: 105 ---TSQETVLSVLPFFHIYGFNGILNVV--MMYGMHMITIPKFTPETYIECVVKYKPTIL 159
              T+ + ++  LP FH++G   +L V+  +  G   +   + TPE Y +  +    T+ 
Sbjct: 164 WQWTADDVLVHGLPLFHVHGL--VLGVLGPLRIGNRFVHTGRPTPEAYAQ-ALSEGGTLY 220

Query: 160 FVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMT 219
           F VP++   +A+ P      L   R +  G+A     + D+         +   + YGMT
Sbjct: 221 FGVPTVWSRIAADPE-AARALRGARLLVSGSAALPVPVFDRLAALTGHRPV---ERYGMT 276

Query: 220 ETSPCTLYTRFAIPEAKLGSTG--------QLV----------------------ML--G 247
           ET   TL TR A  E + G  G        +LV                       L  G
Sbjct: 277 ETL-ITLSTR-ADGERRPGWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRGPTLFDG 334

Query: 248 YLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDR-TKELIKVKGNQVAPYKKLAGGV 306
           YL   +AT     ++GW  TGDVA  D DG   IV R + +LIK  G     Y+  AG +
Sbjct: 335 YLNRPDATAAAFTADGWFRTGDVAVVDPDGMHRIVGRESTDLIKSGG-----YRIGAGEI 389

Length = 471

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score = 96.3 bits (240), Expect = 4e-22
 Identities = 81/311 (26%), Positives = 118/311 (37%), Gaps = 57/311 (18%)

Query: 18  LPNFRGTIVVGGEHDKSKNIFGFKQLVTS----QPPD----FQLPKISPNDLAMLPYSSG 69
           LP  R  +VVGG+   S     F+ L+ +    Q PD        +  P+D+  L Y+SG
Sbjct: 153 LPALRHVVVVGGDGADS-----FEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSG 207

Query: 70  TTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD-TSQETVLSVLPFFHIYGFNGILNV 128
           TTG PKGV  + N    N        IV +       + + +L   P  H  GF   L +
Sbjct: 208 TTGEPKGVMHTANTLMAN--------IVPYAERLGLGADDVILMASPMAHQTGFMYGLMM 259

Query: 129 VMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTC 188
            +M G   +    + P    E +     T        L  L      +   ++S+R   C
Sbjct: 260 PVMLGATAVLQDIWDPARAAELIRTEGVTFTMASTPFLTDLTRAVKESGRPVSSLRTFLC 319

Query: 189 GAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPE-------------- 234
             AP   +L+   ++        I   +GMTE    TL       E              
Sbjct: 320 AGAPIPGALV---ERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVE 376

Query: 235 --------AKL--GSTGQLVM------LGYLKNEEATKETVDSEGWLHTGDVAYYDEDGY 278
                   A L  G  G+L +       GYLK  +      D++GW  TGD+A  D DGY
Sbjct: 377 VRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNG--TDADGWFDTGDLARIDADGY 434

Query: 279 FYIVDRTKELI 289
             I  R+K++I
Sbjct: 435 IRISGRSKDVI 445

Length = 547

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 95.0 bits (237), Expect = 9e-22
 Identities = 75/286 (26%), Positives = 110/286 (38%), Gaps = 65/286 (22%)

Query: 58  PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV-------HPDIVNHIPTS-DTSQET 109
           P+DLA + ++SG+TG PKGV++SH N A  L+  V            N  P S D     
Sbjct: 96  PDDLAYILFTSGSTGKPKGVQISHANLASFLDWMVEDFDLTEGDVFSNQAPFSFD----- 150

Query: 110 VLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFT---PETYIECVVKYKPTILFVVPSLL 166
            LSV   F ++         +  G  +  IPK     P    E + ++  T+   VPS  
Sbjct: 151 -LSV---FDLFPA-------LASGATLYVIPKEQIADPLALFEFLKEHGLTVWVSVPSFA 199

Query: 167 LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTE-TSPCT 225
             L     + PE L S+R          K L    +++    +  I   YG TE T   T
Sbjct: 200 SLLLLSRELNPESLPSLRTFLFCGEVLPKKLAKALRRRFP--NARIINLYGPTEATVAVT 257

Query: 226 LY--TR------------FAIPEAKL------------GSTGQL------VMLGYLKNEE 253
            Y  T             +  P  +             G  G+L      V  GYL N E
Sbjct: 258 AYEVTPEPLSRNEPLPIGYPKPGLRALILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPE 317

Query: 254 ATKE---TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
            T +     + + W  TGD+ Y ++DG    + R    IK+ G ++
Sbjct: 318 KTAKAFFQDEGQRWYRTGDLVYLEDDGLLVYLGRKDFQIKLHGYRI 363

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 93.5 bits (233), Expect = 2e-21
 Identities = 65/289 (22%), Positives = 103/289 (35%), Gaps = 72/289 (24%)

Query: 57  SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPF 116
            P+DLA + Y+SG+TG PKGV ++H +  VNL       +                 +  
Sbjct: 118 GPDDLAYVIYTSGSTGRPKGVVVTHRS-LVNL----LAWLARRYGLDPDD------RVLQ 166

Query: 117 FHIYGFNGIL-----------NVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
           F    F+  +            +V+                    + ++  T+L + PSL
Sbjct: 167 FASLSFDASVEEIFGALLAGATLVVPPEDEERDDAALLAAL----IAEHPVTVLNLTPSL 222

Query: 166 LLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT 225
           L  LA+     P  LAS+R V  G    T +L+D+++ +       +   YG TET+  +
Sbjct: 223 LALLAAAL---PPALASLRLVILGGEALTPALVDRWRARG--PGARLINLYGPTETTVWS 277

Query: 226 LYTRFAIPEAK---------------------------LGSTGQL------VMLGYLKNE 252
             T     +A                            +G  G+L      V  GYL   
Sbjct: 278 TATLVDPDDAPRESPVPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYLNRP 337

Query: 253 EATKE--------TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
           E T E          D      TGD+  Y  DG    + R  + +K++G
Sbjct: 338 ELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRG 386

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score = 93.4 bits (232), Expect = 4e-21
 Identities = 68/283 (24%), Positives = 111/283 (39%), Gaps = 46/283 (16%)

Query: 49  PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDI---VNHIPTSDT 105
           P  + P   P   A + Y+SGTTG+PKG  +          +     +            
Sbjct: 142 PPIEDPPREPEQPAFVFYTSGTTGLPKGAVIPQ--------RAAESRVLFMSTQAGLRHG 193

Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
               VL ++P +H+ GF  +L   +      + + +F P   ++ + + + T LF  P+ 
Sbjct: 194 RHNVVLGLMPLYHVIGFFAVLVAALALDGTYVVVEEFDPADALKLIEQERVTSLFATPTH 253

Query: 166 LLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT 225
           L  LA+     P  L S+  VT   A    +++++  Q +  E + I   YG TE    +
Sbjct: 254 LDALAAAAEGAPLKLDSLEHVTFAGATMPDAVLERVNQHLPGEKVNI---YGTTEAMN-S 309

Query: 226 LYTRFAIPEAKL-----------------------GSTGQLVM-------LGYLKNEEAT 255
           LY R      ++                       G  G+LV+        GYL   +AT
Sbjct: 310 LYMRDPRTGTEMRPGFFSEVRIVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQPQAT 369

Query: 256 KETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
            E +  +GW  T DVA  D  G   I+ R  ++I   G  + P
Sbjct: 370 AEKL-QDGWYRTSDVAVVDPSGTVRILGRVDDMIISGGENIHP 411

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score = 92.3 bits (230), Expect = 9e-21
 Identities = 81/302 (26%), Positives = 121/302 (40%), Gaps = 73/302 (24%)

Query: 40  FKQLVTSQPPDF--QLPK-----ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV 92
           ++  + S  PDF   LP      I+ N      Y+SGTTG PKGV   H    +N     
Sbjct: 162 YEAFLASGDPDFAWTLPADEWDAIALN------YTSGTTGNPKGVVYHHRGAYLN----- 210

Query: 93  HPDIVNHIPTSDTSQETV-LSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECV 151
               +++I      +  V L  LP FH  G+     V    G + + + K  P+   + +
Sbjct: 211 ---ALSNILAWGMPKHPVYLWTLPMFHCNGWCFPWTVAARAGTN-VCLRKVDPKLIFDLI 266

Query: 152 VKYKPTILFVVPSLLLFLASHPAVTPEHLA-SIREVTCGAAPATKSLIDKFKQKVQREDI 210
            ++  T     P +L  L + PA     +   +  +  GAAP    +      K++    
Sbjct: 267 REHGVTHYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVI-----AKMEEIGF 321

Query: 211 TIRQGYGMTET-SPCTL------YTRFAIPE-AKL------------------------- 237
            +   YG+TET  P T+      +    + E A+L                         
Sbjct: 322 DLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPV 381

Query: 238 ---GST-------GQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKE 287
              G T       G +VM GYLKN +AT+E     GW HTGD+A    DGY  I DR+K+
Sbjct: 382 PADGETIGEIMFRGNIVMKGYLKNPKATEEAFAG-GWFHTGDLAVLHPDGYIKIKDRSKD 440

Query: 288 LI 289
           +I
Sbjct: 441 II 442

Length = 545

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score = 91.0 bits (226), Expect = 3e-20
 Identities = 69/285 (24%), Positives = 109/285 (38%), Gaps = 66/285 (23%)

Query: 56  ISPNDLAMLPYSSGTTGVPKGVKLSHN-------NCAVNLEQCVHPDIVNHIPTSDTSQE 108
           + P D A + Y+SGTTG  KGV   H        N A +LE  +  D V           
Sbjct: 177 VQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDLE--IGADDV----------- 223

Query: 109 TVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLF 168
            + + LP FH    N      ++ G   +  P+F+   +   V ++  T+ +++ +++  
Sbjct: 224 -LYTTLPLFHTNALNAFFQ-ALLAGATYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSI 281

Query: 169 LASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET-SPCTLY 227
           L S PA   +    +R       PA  +L   F+   +R  + +  GYG TET     + 
Sbjct: 282 LLSQPARESDRAHRVRVALGPGVPA--ALHAAFR---ERFGVDLLDGYGSTETNFVIAV- 335

Query: 228 TRFAIPEAKLGSTGQLV---------------------------------MLGYLKNEEA 254
                   + GS G+L                                    GY    E 
Sbjct: 336 ---THGSQRPGSMGRLAPGFEARVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEK 392

Query: 255 TKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
           T E   +  W HTGD    D DG+F  VDR K+ I+ +G  ++ +
Sbjct: 393 TVEAWRNL-WFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSF 436

Length = 542

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score = 90.7 bits (225), Expect = 3e-20
 Identities = 75/274 (27%), Positives = 113/274 (41%), Gaps = 46/274 (16%)

Query: 57  SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNH-IPTSDTSQETVLSVLP 115
           +P DL  L Y+SGTT  PKGV  S+ N        +H   ++H I    T+ E +L V P
Sbjct: 147 APTDLVRLMYTSGTTDRPKGVMHSYGN--------LHWKSIDHVIALGLTASERLLVVGP 198

Query: 116 FFHIYGFN--GILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHP 173
            +H+  F+  GI   V+  G  +    +F PE  +  + +++ T  ++ P +L  + + P
Sbjct: 199 LYHVGAFDLPGI--AVLWVGGTLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVP 256

Query: 174 AVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP 233
                 L S+     G     +S I  F +   R        YG+TET            
Sbjct: 257 DRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYI--DAYGLTETCSGDTLMEAGRE 314

Query: 234 EAKLGSTGQL------------------------------VMLGYLKNEEATKETVDSEG 263
             K+GSTG+                               V  GY K+ E T E      
Sbjct: 315 IEKIGSTGRALAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGD 373

Query: 264 WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
           W  +GDV Y DE+G+ Y+ DR K++I   G  +A
Sbjct: 374 WFRSGDVGYLDEEGFLYLTDRKKDMIISGGENIA 407

Length = 497

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 90.5 bits (225), Expect = 4e-20
 Identities = 78/327 (23%), Positives = 135/327 (41%), Gaps = 60/327 (18%)

Query: 13  KIGATLPNFRGTIVVGGEHDK----SKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSS 68
            +    PN +G + +  +       S  +  ++ LV +Q  D+  P+   N  + L Y+S
Sbjct: 127 ALAPQCPNVKGWVAMT-DAAHLPAGSTPLLCYETLVGAQDGDYDWPRFDENQASSLCYTS 185

Query: 69  GTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNV 128
           GTTG PKG   SH +  ++      PD +       ++++ VL V+P FH+  + G+   
Sbjct: 186 GTTGNPKGALYSHRSTVLHAYGAALPDAMGL-----SARDAVLPVVPMFHVNAW-GLPYS 239

Query: 129 VMMYGMHMITI-PKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVT 187
             + G  ++   P    ++  E +   + T    VP++ L L +H        +++R   
Sbjct: 240 APLTGAKLVLPGPDLDGKSLYELIEAERVTFSAGVPTVWLGLLNHMREAGLRFSTLRRTV 299

Query: 188 CGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP----CTLYTR-FAIPEA------- 235
            G +    ++I  F+ +     + +   +GMTE SP    C L  +   +P         
Sbjct: 300 IGGSACPPAMIRTFEDEY---GVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLE 356

Query: 236 KLG-----------------------STGQLVMLG------YLKNEEATKETVDSEGWLH 266
           K G                       + G L + G      Y + + +    VD  GW  
Sbjct: 357 KQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDASP--LVD--GWFP 412

Query: 267 TGDVAYYDEDGYFYIVDRTKELIKVKG 293
           TGDVA  D DG+  I DR+K++IK  G
Sbjct: 413 TGDVATIDADGFMQITDRSKDVIKSGG 439

Length = 539

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 90.6 bits (225), Expect = 5e-20
 Identities = 70/308 (22%), Positives = 129/308 (41%), Gaps = 65/308 (21%)

Query: 41  KQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHI 100
           ++ + +   D      +P+D  ++ ++SGTTG PKGV +SH+  A+ ++      IV + 
Sbjct: 157 QRALGTTELD---YAWAPDDAVLICFTSGTTGRPKGVTISHS--ALIVQSLAKIAIVGY- 210

Query: 101 PTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILF 160
                  +  L   P  HI G +  L ++M+   H++ +PKF  +  ++ + ++  T + 
Sbjct: 211 ----GEDDVYLHTAPLCHIGGLSSALAMLMVGACHVL-LPKFDAKAALQAIKQHNVTSMI 265

Query: 161 VVPSLL--LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGM 218
            VP+++  L   +  ++T +   S+R++  G    +  L+   K+      +     YGM
Sbjct: 266 TVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLF--SAYGM 323

Query: 219 TETSPC------TLY---------TRFAIPEAKLGSTGQL-------------------- 243
           TE   C      TL+         T   + + K  S  Q                     
Sbjct: 324 TEA--CSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDE 381

Query: 244 -------------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIK 290
                        VMLGY      T   + ++GWL TGD+ + D+ G  +++ R+ + IK
Sbjct: 382 SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIK 441

Query: 291 VKGNQVAP 298
             G  V P
Sbjct: 442 TGGENVYP 449

Length = 563

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 90.0 bits (224), Expect = 5e-20
 Identities = 62/285 (21%), Positives = 95/285 (33%), Gaps = 61/285 (21%)

Query: 60  DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVL-SVLPFFH 118
           D A   Y+SGTTG+PK   +SH                          + VL   LP +H
Sbjct: 82  DPAFYIYTSGTTGLPKAAIMSHRRWLRAGAVFGG--------LGLLKPDDVLYLCLPLYH 133

Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
                   +  +  G  +    KF+   +   V +Y  T    V  L  +L + P    +
Sbjct: 134 SNALTVGWSSALAAGASLALRRKFSASQFWPDVRRYGATAFQYVGELCRYLLNQPEKPDD 193

Query: 179 HLASIREVT-CGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEA-- 235
               +R++   G  P    + D+FK++       I + YG TE         F  P A  
Sbjct: 194 RDHPLRKIIGNGLRP---DIWDEFKERFGVPR--IVEFYGSTE-GNVGFINLFNKPGAVG 247

Query: 236 ------------------------------KLGSTGQLV--------MLGYLKNEEATKE 257
                                           G  G L+          GY  +E   K+
Sbjct: 248 RLPPAAIAVVKYDVETEEPIRDANGFCIKVPPGEVGLLLGEITDRNPFDGYTDDEATEKK 307

Query: 258 TV-----DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
            +       + + +TGD+   D  GYFY VDR  +  + KG  V+
Sbjct: 308 ILRDVFKKGDAYFNTGDLVRRDGFGYFYFVDRLGDTFRWKGENVS 352

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 89.6 bits (223), Expect = 7e-20
 Identities = 72/304 (23%), Positives = 111/304 (36%), Gaps = 78/304 (25%)

Query: 58  PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF 117
           P+D+A + +SSG+TG PKGV L+H N   N+E      I+       TS++  LS +P  
Sbjct: 105 PDDIAFIQFSSGSTGEPKGVILTHKNLLTNIE-----AIIEAAEI--TSEDVFLSWMPLT 157

Query: 118 HIYGFNGILNVVMMYGMHMITIP--KFT--PETYIECVVKYKPTIL----FVVPSLLLFL 169
           H  G  G        G++   +P   F   P  +++   +++ TIL    F    LL   
Sbjct: 158 HDMGLIGFHLTPTALGINQYLMPTRLFIRRPLLWLDKASQHRATILSSPNFGYKYLLKHF 217

Query: 170 ASHPAVTPE-HLASIREVTCGAAPATKSLIDKF--------------------------- 201
                   +  L+S+R +  GA P +  L ++F                           
Sbjct: 218 K--TEKIIDWDLSSVRLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLAV 275

Query: 202 ---------------------KQKVQREDITIRQGYGMTETSPCTLYTRFAI-------- 232
                                  K+   D          E           I        
Sbjct: 276 SFPKPGEPFKTVCLDRNHLKVGVKIIEIDPKNSDAISFVEVGSPIDGCEIRIVDDAGEVL 335

Query: 233 PEAKLGS---TGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELI 289
           P+  +G     G  V  GY  N EATK+++  +GWL TGD+ +   +G   I  R K++I
Sbjct: 336 PDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFL-RNGRLVITGRAKDII 394

Query: 290 KVKG 293
            V G
Sbjct: 395 IVNG 398

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 90.4 bits (225), Expect = 7e-20
 Identities = 84/299 (28%), Positives = 122/299 (40%), Gaps = 73/299 (24%)

Query: 41   KQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHI 100
            K L+  + P        P+D A++ ++SG+ G PKGV LSH N   N  Q     +   I
Sbjct: 775  KGLLAGRFPLVYFCNRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQ-----VAARI 829

Query: 101  PTSDTSQETVLSVLPFFHIYGFNG-----ILNVVMMY----GMHMITIPKFTPETYIECV 151
              S   ++ V + LP FH +G  G     +L+ V ++     +H   IP        E +
Sbjct: 830  DFS--PEDKVFNALPVFHSFGLTGGLVLPLLSGVKVFLYPSPLHYRIIP--------ELI 879

Query: 152  VKYKPTILFVVPSLLLFLASHPAVT-PEHLASIREVTCGAAP---ATKSL-IDKFKQKVQ 206
                 TILF       FL  +     P    S+R V  GA      T+   ++KF     
Sbjct: 880  YDTNATILF---GTDTFLNGYARYAHPYDFRSLRYVFAGAEKVKEETRQTWMEKFG---- 932

Query: 207  REDITIRQGYGMTETSPCTLYTRFAI--PEA-KLGSTGQL-------------------- 243
               I I +GYG+TET+P       A+  P   K G+ G+L                    
Sbjct: 933  ---IRILEGYGVTETAPV-----IALNTPMHNKAGTVGRLLPGIEYRLEPVPGIDEGGRL 984

Query: 244  ------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
                  VMLGYL+ E        ++GW  TGD+   DE+G+  I  R K   K+ G  +
Sbjct: 985  FVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMI 1043

Length = 1140

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 88.7 bits (220), Expect = 2e-19
 Identities = 87/328 (26%), Positives = 128/328 (39%), Gaps = 57/328 (17%)

Query: 16  ATLPNFRGTIVVGGEHDKSKNIFG-----FKQLVTSQPPDFQLPKISPNDLAMLPYSSGT 70
               + R  I+VG     S+   G     + +L+     D   P I   D+A + Y+SG+
Sbjct: 116 PGCHDLRTLIIVGDPAHASEGHPGEEPASWPKLLALGDADPPHPVIDS-DMAAILYTSGS 174

Query: 71  TGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVM 130
           TG PKGV LSH N  V   Q V   + N         + +L+VLP    YGFN  L    
Sbjct: 175 TGRPKGVVLSHRN-LVAGAQSVATYLENR------PDDRLLAVLPLSFDYGFNQ-LTTAF 226

Query: 131 MYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGA 190
             G  ++      P   ++ + K+  T L  VP L   LA           S+R +T   
Sbjct: 227 YVGATVVLHDYLLPRDVLKALEKHGITGLAAVPPLWAQLAQL-DWPESAAPSLRYLTNSG 285

Query: 191 APATKSLIDKFKQKVQREDITIRQGYGMTET------SPCTLYTR-----FAIP------ 233
               ++ + + +  +    + +   YG+TE        P  +  R      AIP      
Sbjct: 286 GAMPRATLSRLRSFLPNARLFLM--YGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLV 343

Query: 234 ------------EAKLGSTGQLVMLGYLKNEEATKE----TVDSEGWLH-------TGDV 270
                       E +L   G LV +GY  + E T E         G LH       +GD 
Sbjct: 344 LREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLPELAVWSGDT 403

Query: 271 AYYDEDGYFYIVDRTKELIKVKGNQVAP 298
              DE+G+ Y V R  E+IK  G +V+P
Sbjct: 404 VRRDEEGFLYFVGRRDEMIKTSGYRVSP 431

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 76/325 (23%), Positives = 119/325 (36%), Gaps = 85/325 (26%)

Query: 46  SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDT 105
           S PPD  L    P+D A+L  +SG+TGVPK V L+H N        V    VN      T
Sbjct: 154 SAPPDAPLHPARPDDPALLLLTSGSTGVPKCVVLTHRNILARSAGTV---QVNGF----T 206

Query: 106 SQETVLSVLPFFHIYG--FNGILNVVMMYGMHMITIPKFT------PETYIECVVKYKPT 157
             +  L+ +P  H+ G     + +V +  G   I +P  T      P  +++ + +Y+ T
Sbjct: 207 PDDVSLNWMPLDHVGGIVMLHLRDVYL--GCQQIHVP--TDYILADPLRWLDLIDRYRVT 262

Query: 158 ILFVVPSLL--LFLASHPAVTPEH--LASIREVTCGAAPATKSLIDKFKQKVQ----RED 209
           I +  P+    L   +   +      L+S+R +           I +F + +       D
Sbjct: 263 ITWA-PNFAFALLNDALERIEDRSWDLSSLRYIINAGEAVVAKTIRRFLELLAPYGLPAD 321

Query: 210 ITIRQGYGMTETSPCTLYT--------------------------------RFA------ 231
             IR  +GM+ET     Y+                                 F       
Sbjct: 322 A-IRPAFGMSETCSGVTYSRGFRTGPDTGGVLVDSLTGPLRFAAADHPEAVTFVELGRPI 380

Query: 232 --------------IPEAKLGS---TGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYD 274
                         +PE ++G     G  V  GY +N EA  E    +GW  TGD+ +  
Sbjct: 381 PGVAIRIVDEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFLH 440

Query: 275 EDGYFYIVDRTKELIKVKGNQVAPY 299
            DG   I  R K++I + G     +
Sbjct: 441 -DGRLTITGREKDMIIINGVNYYNH 464

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score = 88.0 bits (218), Expect = 3e-19
 Identities = 79/320 (24%), Positives = 125/320 (39%), Gaps = 58/320 (18%)

Query: 18  LPNFRGTIVVGGEHDKSKNIFGFKQLVT-----SQPPD---FQLPKISPNDLAMLPYSSG 69
           LP  R  +V+ G+ D       F +++        P        P+ SP+D+  L Y+SG
Sbjct: 151 LPALRQVVVIDGDGDD-----SFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSG 205

Query: 70  TTGVPKGVKLSHNNCAVNLEQCVHPDIVN-HIPTSDTSQETVLSVLPFFHIYGFNGILNV 128
           TTG PKGV  + N    N+    HP      +   D     +L   P  H  GF   L +
Sbjct: 206 TTGEPKGVMHTANTLFSNI----HPYAERLELGGGD----VILMASPMAHQTGFMYGLMM 257

Query: 129 VMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTC 188
            ++     +    + P    E + +   T        L  L      +   + S+    C
Sbjct: 258 PLILNATAVLQDIWNPARAAELIRETGVTFTMASTPFLTDLCRAVKESGAPVPSLFTFLC 317

Query: 189 GAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLY----------TRFAIP----E 234
             AP    L+++  + +      I   +GMTE    T+           T    P    E
Sbjct: 318 AGAPIPGILVERAWELL---GALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVE 374

Query: 235 AKL----------GSTGQLVML------GYLKNEEATKETVDSEGWLHTGDVAYYDEDGY 278
            K+          G TG+L++       GYLK       + D+EGW  TGD+A+ D +GY
Sbjct: 375 VKVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLN--STDAEGWFDTGDLAFQDAEGY 432

Query: 279 FYIVDRTKELIKVKGNQVAP 298
             I  R+K++I ++G +  P
Sbjct: 433 IRINGRSKDVI-IRGGENIP 451

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 87.8 bits (218), Expect = 3e-19
 Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 28/135 (20%)

Query: 189 GAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPC---------TLY----------TR 229
           GAAP ++  ++ F       +I I + YGM+ETS            L           T+
Sbjct: 326 GAAPISRETLEFFLSL----NIPIMELYGMSETSGPHTVSNPQNYRLLSCGKALPGCETK 381

Query: 230 FAIPEA----KLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRT 285
              P+A    ++   G+ V +GYL  EE T+E +D +GWLH+GD+ + D+DG+ YI  R 
Sbjct: 382 IHNPDADGIGEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRI 441

Query: 286 KELIKVKGNQ-VAPY 299
           KELI   G + V P 
Sbjct: 442 KELIITAGGENVPPV 456

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 87.7 bits (218), Expect = 4e-19
 Identities = 81/340 (23%), Positives = 129/340 (37%), Gaps = 92/340 (27%)

Query: 42  QLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLE---QCVHPDIVN 98
            L+ + P D    +   +DLA++  +SG+TG PK V+++H N   N E        D+  
Sbjct: 137 DLLAADPID--PVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAAEFDVET 194

Query: 99  HIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYI-------ECV 151
            +         ++S LP FH  G  G L V M +G  ++ +   TP  ++       E +
Sbjct: 195 DV---------MVSWLPLFHDMGMVGFLTVPMYFGAELVKV---TPMDFLRDPLLWAELI 242

Query: 152 VKYKPTILFVVPSLLLFLASHPAVTPEH----LASIREVTCGAAPATKSLIDKF-----K 202
            KY+ T+          LA       +     L+S+R    GA P   + ++       +
Sbjct: 243 SKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFALNGAEPIDPADVEDLLDAGAR 302

Query: 203 QKVQREDITIRQGYGMTET------SPCTL-------------YTRFAIPEAKLGSTGQL 243
             ++ E I     YGM E       SPC                 R A+P  K G+T +L
Sbjct: 303 FGLRPEAIL--PAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATK-GNTRRL 359

Query: 244 VMLG--------------------------YLKNEEATK---------ETVDSEGWLHTG 268
             LG                           L+ E  T             D++GWL TG
Sbjct: 360 ATLGPPLPGLEVRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGFIPAQDADGWLDTG 419

Query: 269 DVAYYDEDGYFYIVDRTKELIKVKGNQVAPY--KKLAGGV 306
           D+ Y  E+G   +  R K++I + G  + P   ++ A  V
Sbjct: 420 DLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARV 459

Length = 545

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 85.0 bits (211), Expect = 3e-18
 Identities = 73/293 (24%), Positives = 116/293 (39%), Gaps = 80/293 (27%)

Query: 39  GFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN---CAVNLEQCVHP- 94
                 ++ P +       P   A + Y+SG+TG PKGV LS       A +L + +   
Sbjct: 98  YIALRPSANPVEL------PAGTAKITYTSGSTGQPKGVCLSAAALETVAQSLAEAIAIL 151

Query: 95  DIVNHIPTSDTSQETVLSVLPFFHIYGFNGIL--NVVMMYGMHM----ITIP-------- 140
           +   H           L +LP          L  N+  +Y   +    + +         
Sbjct: 152 EPERH-----------LCLLPL-------ATLLENIAGVYAPLLMGATVILVPLAELGLS 193

Query: 141 ---KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSL 197
                 P  ++  + +++P  L +VP LL+ L +     P    S+R V  G A  + SL
Sbjct: 194 GSSGLDPAQFVAALSRWQPHSLILVPQLLMALVAAVEQGPLPPESLRFVAVGGARVSPSL 253

Query: 198 IDKFKQKVQREDITIRQGYGMTE-TSPCTLYTRFAIPEA-KLGSTGQL------------ 243
           +    Q+ +   + + +GYG++E  S  +L T    P A + GS G+             
Sbjct: 254 L----QRARALGLPVYEGYGLSECASVVSLNT----PGADRPGSVGKPLPHVQVSIANDG 305

Query: 244 -------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELI 289
                  +MLGYL    AT +      W  TGD+ + DE+GY YI  R K LI
Sbjct: 306 EILVRGSLMLGYLGEPPATDD------WWATGDLGHLDEEGYLYINGRKKNLI 352

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 83.7 bits (207), Expect = 9e-18
 Identities = 74/327 (22%), Positives = 124/327 (37%), Gaps = 48/327 (14%)

Query: 6   QLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLP 65
           +LL V        P+    +VVG             +L+ ++   F+      +D A   
Sbjct: 111 ELLPVIKAALGKSPHLEHRVVVGRPEAGEVQ---LAELLATESEQFKPAATQADDPAFWL 167

Query: 66  YSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGI 125
           YSSG+TG+PKGV  +H+N     E      +   I   D     V S    F  YG    
Sbjct: 168 YSSGSTGMPKGVVHTHSNPYWTAELYARNTL--GIREDD----VVFSAAKLFFAYGLGNA 221

Query: 126 LNVVMMYGMHMITIP-KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIR 184
           L   M  G   + +  + TP+   + + +++PTI + VP+L   + + P +  E    +R
Sbjct: 222 LTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVPTLYAAMLADPNLPAEDQVRLR 281

Query: 185 EVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEA-KLGSTGQL 243
             T         +  +++    R  + I  G G TE     L      P   + G++G+ 
Sbjct: 282 LCTSAGEALPAEVGQRWQ---ARFGVDIVDGIGSTEMLHIFLSNL---PGDVRYGTSGKP 335

Query: 244 V------------------------------MLGYLKNEEATKETVDSEGWLHTGDVAYY 273
           V                                 Y  N   T++T   E W  +GD    
Sbjct: 336 VPGYRLRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGE-WTRSGDKYVR 394

Query: 274 DEDGYFYIVDRTKELIKVKGNQVAPYK 300
           ++DG +    RT +++KV G  V+P++
Sbjct: 395 NDDGSYTYAGRTDDMLKVSGIYVSPFE 421

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS)

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 69/299 (23%), Positives = 107/299 (35%), Gaps = 46/299 (15%)

Query: 16  ATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQ--LPKISPNDLAMLPYSSGTTGV 73
           A L      +V          I     L T            + P+ +A   ++SG+TG+
Sbjct: 119 AALGLAGVPVVAVRGAPGGPAIAFAALLATPPTAAVDAAFAAVGPDTVAKYLFTSGSTGL 178

Query: 74  PKGVKLSHNNCAVN---LEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVM 130
           PK V  +H     N   + QC  P +    P        ++  LP+ H +G N   N+V+
Sbjct: 179 PKAVINTHRMLCANQAMIAQCW-PFLTEEPPV-------LVDWLPWNHTFGGNHNFNMVL 230

Query: 131 MYGMHM-ITIPKFTPETYIECVVKYK---PTILFVVP----SLLLFLASHPAVTPEHLAS 182
             G  + I   K  P  + E +   +   PT+ F VP     L+  L    A+       
Sbjct: 231 YNGGTLYIDDGKPVPGLFEETLRNLREVSPTVYFNVPKGFEMLVDALERDAALRRRFFKR 290

Query: 183 IREVTCGAAPATKSL---IDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP------ 233
           +R +    A   + +   +     +   E I +  G G TET+P   +  +         
Sbjct: 291 LRLLFYAGAALPQDVWDRLQALAVRTTGERIPMTSGLGATETAPTATFVHWPTDRSGVIG 350

Query: 234 ------EAKLGSTGQ---------LVMLGYLKNEEATKETVDSEGWLHTGD-VAYYDED 276
                 E KL   G           V  GY ++ E T E  D EG+   GD V + D D
Sbjct: 351 LPAPGTELKLVPNGGKLEVRVKGPNVTPGYWRDPELTAEAFDEEGFYRIGDAVRFVDPD 409

Feruloyl-CoA synthetase is an essential enzyme in the feruloyl acid degradation pathway and enables some proteobacteria to grow on media containing feruloyl acid as the sole carbon source. It catalyzes the transfer of CoA to the carboxyl group of ferulic acid, which then forms feruloyl-CoA in the presence of ATP and Mg2. The resulting feruloyl-CoA is further degraded to vanillin and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a subfamily of the adenylate-forming enzymes superfamily. Length = 559

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 83.0 bits (206), Expect = 1e-17
 Identities = 45/150 (30%), Positives = 58/150 (38%), Gaps = 35/150 (23%)

Query: 183 IREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS-PCTL-------YTRFAIP- 233
           +R +  G AP +    +  +  +      + QGYG+TET    TL             P 
Sbjct: 271 VRLMLSGGAPLSPDTQEFLRVAL---GCPVLQGYGLTETCAGGTLSDPGDTTTGHVGPPL 327

Query: 234 ---EAKLGST-------------------GQLVMLGYLKNEEATKETVDSEGWLHTGDVA 271
              E KL                      G  V  GY KN E T E  D +GW HTGD+ 
Sbjct: 328 PCCEIKLVDVPEMGYFAKDDPPRGEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGDIG 387

Query: 272 YYDEDGYFYIVDRTKELIK-VKGNQVAPYK 300
            +  DG   I+DR K L K  +G  VA  K
Sbjct: 388 EWLPDGTLKIIDRKKNLFKLSQGEYVALEK 417

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 82.8 bits (205), Expect = 1e-17
 Identities = 68/301 (22%), Positives = 113/301 (37%), Gaps = 89/301 (29%)

Query: 43  LVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPT 102
           L   +P D       P   +M+ Y+SGTTG PKGV+ +                    PT
Sbjct: 140 LAQQEPYD---GPPVPQPQSMI-YTSGTTGHPKGVRRAA-------------------PT 176

Query: 103 SDTSQETVLSVLPFFHIYGFNGILNVVM---MY--------------GMHMITIPKFTPE 145
            + +            IYG    +  ++   +Y              G  ++  P+F PE
Sbjct: 177 PEQAAAAEQMRA---LIYGLKPGIRALLTGPLYHSAPNAYGLRAGRLGGVLVLQPRFDPE 233

Query: 146 TYIECVVKYKPTILFVVPSLLLFLASHPAVTPEH--LASIREVTCGAAPATKSLIDKFKQ 203
             ++ + +++ T + +VP++ + L   P        ++S+R V   AAP           
Sbjct: 234 ELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPA-------- 285

Query: 204 KVQREDI-----TIRQGYGMTETSPCTLYTR-----------FAIPEAKL---------- 237
            V+R  I      I + YG TE+   T  T             A P A+L          
Sbjct: 286 DVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPL 345

Query: 238 --GSTGQLVM-------LGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKEL 288
             G  G++           Y    E   E +D  G++ +GDV Y D DGY ++ DR +++
Sbjct: 346 PQGEIGEIYSRIAGNPDFTYHNKPEKRAE-IDRGGFITSGDVGYLDADGYLFLCDRKRDM 404

Query: 289 I 289
           +
Sbjct: 405 V 405

Length = 509

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 70/274 (25%), Positives = 111/274 (40%), Gaps = 55/274 (20%)

Query: 66  YSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIP--TSDTSQETV-LSVLPFFHIYGF 122
           ++SGTTG PK   L+H   A          I NH+      T+++   L V P  H  G 
Sbjct: 170 FTSGTTGRPKAAVLTHGQMAFV--------ITNHLADLMPGTTEQDASLVVAPLSHGAGI 221

Query: 123 NGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLAS 182
           + +  V       ++   +F P      V +++ T LF VP++L  L  HPAV     +S
Sbjct: 222 HQLCQVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVPTILKMLVEHPAVDRYDHSS 281

Query: 183 IREVTCGAAPATKSLIDKFKQKVQREDI--TIRQGYGMTETS------PCTLYTRFAIPE 234
           +R V    AP  ++      QK     +   + Q +G+ E +      P  L+     P+
Sbjct: 282 LRYVIYAGAPMYRA-----DQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPD 336

Query: 235 AKLGS------------------------TGQL------VMLGYLKNEEATKETVDSEGW 264
           A++G+                        TG++      V  GY  N EA  +    +GW
Sbjct: 337 ARIGTCGFERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGW 395

Query: 265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
             TGD+ + D  G+ YI  R  ++    G+ V P
Sbjct: 396 FRTGDLGHLDARGFLYITGRASDMYISGGSNVYP 429

Length = 528

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 68/284 (23%), Positives = 112/284 (39%), Gaps = 74/284 (26%)

Query: 57  SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVL----- 111
           SP+D A + Y+SG+TG PKGV ++H N   N  +     I   +      +  VL     
Sbjct: 97  SPDDPAYVIYTSGSTGKPKGVVITHRN-ICNFLR-AEGAI---LGIRPGDR--VLQFASI 149

Query: 112 ----SVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLL 167
               S+L  F      G L V+    + +  + +F        + + + T+  + PSLL 
Sbjct: 150 AFDVSILEIFTTLLAGGTL-VIPPEELRLEDLAEF--------LNRLRVTVAHLTPSLLA 200

Query: 168 FLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS----- 222
            L   P   P    S+R +  G     ++L+D++ +  +     +   YG TE +     
Sbjct: 201 LL--DPEDVP----SLRTLILGGEACPQALVDRWSKPRR-----LLNTYGPTEATVTATA 249

Query: 223 -------------PCTLYTRFAI-----PEAKLGSTGQLVM------LGYLKNEEATKE- 257
                        P   YT + +     P   +G+ G+L +       GYL   E T E 
Sbjct: 250 SRLTPGKPVNIGRPLPNYTCWVLDPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEK 309

Query: 258 TVDSEGWL--------HTGDVAYYDEDGYFYIVDRTKELIKVKG 293
            +    WL         TGD+  Y EDG    + R  + +K++G
Sbjct: 310 FIPDPFWLNNPGGRIYRTGDLVRYLEDGSLEFLGRKDDQVKIRG 353

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 82.3 bits (204), Expect = 2e-17
 Identities = 65/271 (23%), Positives = 101/271 (37%), Gaps = 62/271 (22%)

Query: 67  SSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGIL 126
           +SGTTG PKG      +    L       +++ +P    + ET L   P FH  G+   L
Sbjct: 215 TSGTTGTPKGAPRPEPSPLAPLAG-----LLSRVPFR--AGETTLLPAPMFHATGW-AHL 266

Query: 127 NVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEH--LASIR 184
            + M  G  ++   +F PE  +E + K+K T L VVP +L  +             +S++
Sbjct: 267 TLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVVPVMLSRILDLGPEVLAKYDTSSLK 326

Query: 185 EVTCGAAPATKSLIDKFKQKVQREDITIRQG------YGMTETSPCTLYTRFAIPE---- 234
            +    +  +  L  +              G      YG TE +  T+    A PE    
Sbjct: 327 IIFVSGSALSPELATRA---------LEAFGPVLYNLYGSTEVAFATI----ATPEDLAE 373

Query: 235 --------------AKLGSTGQLVMLG-----YLKNEEA--------TKETVDSEGWLHT 267
                           L   G  V  G     ++ N            K+ +D  G L +
Sbjct: 374 APGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGNGFPFEGYTDGRDKQIID--GLLSS 431

Query: 268 GDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           GDV Y+DEDG  ++  R  ++I   G  V P
Sbjct: 432 GDVGYFDEDGLLFVDGRDDDMIVSGGENVFP 462

Length = 549

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 88/342 (25%), Positives = 134/342 (39%), Gaps = 73/342 (21%)

Query: 5   PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAML 64
           P LLE   K    LP+ +  ++VG + ++      F  L+     +F +      D A+L
Sbjct: 153 PALLE--RKPADDLPSLKHVLLVGEDVEEGPGTLDFNALMEQASDEFDIEWTDREDGAIL 210

Query: 65  PYSSGTTGVPKGVKLSHNNCAVNLEQCV--------HPDIVNHIPTSDTSQETVLSVLPF 116
            Y+SG+TG PKGV   HN  A+ L+           H D V +  T+D    T  S    
Sbjct: 211 HYTSGSTGKPKGVLHVHN--AM-LQHYQTGKYVLDLHEDDV-YWCTADPGWVTGTS---- 262

Query: 117 FHIYG-----FNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLAS 171
              YG      NG  NV+   G       +F+PE +   +  YK T+ +  P+ +  L  
Sbjct: 263 ---YGIFAPWLNGATNVI--DG------GRFSPERWYRILEDYKVTVWYTAPTAIRMLMG 311

Query: 172 HPA--VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTR 229
                V    L+S+R +     P    ++ ++  KV    + I   + MTET    +   
Sbjct: 312 AGDDLVKKYDLSSLRHILSVGEPLNPEVV-RWGMKVF--GLPIHDNWWMTETG-GIMIAN 367

Query: 230 FAIPEAKLGS------------------------TGQLV--------MLGYLKNEEATKE 257
           +   + K GS                         G L         M G   N E  + 
Sbjct: 368 YPAMDIKPGSMGKPLPGIEAAIVDDQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYES 427

Query: 258 TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
              +  W  +GD AY DEDGYF+   R  ++IK  G +V P+
Sbjct: 428 YF-AGDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPF 468

Length = 570

>gnl|CDD|180533 PRK06334, PRK06334, long chain fatty acid--[acyl-carrier-protein] ligase; Validated

 Score = 81.8 bits (202), Expect = 4e-17
 Identities = 72/281 (25%), Positives = 114/281 (40%), Gaps = 45/281 (16%)

Query: 51  FQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV 110
           F +    P D+A++ ++SGT  +PKGV L+H N   N   C+     +  P  D   + +
Sbjct: 175 FGVSDKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACL--KFFS--PKED---DVM 227

Query: 111 LSVLPFFHIYGFNGILNVVMMYGMHMI-TIPKFTPETYIECVVKYKPTILFVVPSLLLFL 169
           +S LP FH YGFN      ++ G+ ++       P+  +E + + K T L   P    ++
Sbjct: 228 MSFLPPFHAYGFNSCTLFPLLSGVPVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYI 287

Query: 170 ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQRE--DITIRQGYGMTETSPCTLY 227
                     L S+R V  G      +  D   Q+  +    I +RQGYG TE SP    
Sbjct: 288 LKTAKKQESCLPSLRFVVIGG----DAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITI 343

Query: 228 TRFAIP--EAKLG-------------------STGQ--LVML-------GYLKNEEATK- 256
                P  E+ +G                   S+G+  LV+        GYL  +     
Sbjct: 344 NTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGF 403

Query: 257 ETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
             +  E W  TGD+ Y D  G  ++  R    +K+    V+
Sbjct: 404 VELGGETWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVS 444

Length = 539

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 85/293 (29%), Positives = 123/293 (41%), Gaps = 73/293 (24%)

Query: 52  QLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPT-SD-TSQET 109
           Q+ +  P D A++ ++SG+ G PKGV  SH +   N+EQ         I T +D T  + 
Sbjct: 359 QVKQ-QPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQ---------IKTIADFTPNDR 408

Query: 110 VLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETY---IECVVKYKPTILFVVPSLL 166
            +S LP FH +G    L   ++ G  +   P  +P  Y    E V     T+LF   + L
Sbjct: 409 FMSALPLFHSFGLTVGLFTPLLTGAEVFLYP--SPLHYRIVPELVYDRNCTVLFGTSTFL 466

Query: 167 LFLA--SHPAVTPEHLASIREVTCGA---APATKSL-IDKFKQKVQREDITIRQGYGMTE 220
              A  ++P       A +R V  GA     +TK L  DKF        + I +GYG+TE
Sbjct: 467 GNYARFANPY----DFARLRYVVAGAEKLQESTKQLWQDKF-------GLRILEGYGVTE 515

Query: 221 TSPCTLYTRFAIP-EAKLGSTGQL--------------------------VMLGYLKNE- 252
            +P        +P  AK G+ G++                          +M GYL+ E 
Sbjct: 516 CAPV---VSINVPMAAKPGTVGRILPGMDARLLSVPGIEQGGRLQLKGPNIMNGYLRVEK 572

Query: 253 ----EA-TKETVDSE---GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
               E  T E    E   GW  TGD+  +DE G+  I  R K   K+ G  V+
Sbjct: 573 PGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVS 625

Length = 718

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 79.8 bits (197), Expect = 2e-16
 Identities = 75/341 (21%), Positives = 128/341 (37%), Gaps = 79/341 (23%)

Query: 19  PNFRGTIVVGGE-------HDKSK-NIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGT 70
           P  R  + +G         H      ++ ++ L+  +   +  P++     A + YS+GT
Sbjct: 133 PCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGT 192

Query: 71  TGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD----TSQETVLSVLPFFHIYGFNGIL 126
           TG PKGV  SH   ++ L+          + T+D    T  E+ L  +P +H+  + G+ 
Sbjct: 193 TGAPKGVVYSHR--SLYLQSL-------SLRTTDSLAVTHGESFLCCVPIYHVLSW-GVP 242

Query: 127 NVVMMYGMHMI-TIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIRE 185
               M G  ++   P  +  T  + +    P +   VP+L + L  H    P    S++E
Sbjct: 243 LAAFMSGTPLVFPGPDLSAPTLAKIIATAMPRVAHGVPTLWIQLMVHYLKNPPERMSLQE 302

Query: 186 VTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS----------------------- 222
           +  G +     LI  +++   R  + +   +GMTETS                       
Sbjct: 303 IYVGGSAVPPILIKAWEE---RYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVS 359

Query: 223 ----PCTLYTRFAIPEAKLGST----------GQLVMLGYLKNEEATK---------ETV 259
               P +L  R       + ST          G  V   Y  +              E V
Sbjct: 360 QGRFPASLEYRIVNDGQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDV 419

Query: 260 D-------SEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
           +       ++GWL TGDV     DG+  I DR +++I+  G
Sbjct: 420 EDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGG 460

Length = 576

>gnl|CDD|236175 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed

 Score = 78.4 bits (194), Expect = 5e-16
 Identities = 73/303 (24%), Positives = 116/303 (38%), Gaps = 50/303 (16%)

Query: 14  IGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPP---DFQLPKISPNDLAMLPYSSGT 70
           + A +P     + V G          F  L+ + P    D     + P+ +A   ++SG+
Sbjct: 162 LAAVVPADVEVVAVRGAVPGRAAT-PFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGS 220

Query: 71  TGVPKGVKLSHNNCAVN---LEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILN 127
           TG+PK V  +H     N   L Q          P        ++  LP+ H +G N  L 
Sbjct: 221 TGLPKAVINTHRMLCANQQMLAQT--------FPFLAEEPPVLVDWLPWNHTFGGNHNLG 272

Query: 128 VVMMY--GMHMITIPKFTPETYIECVVKYK---PTILFVVP----SLLLFLASHPAVTPE 178
           +V+ Y  G   I   K TP  + E +   +   PT+ F VP     L+  L    A+   
Sbjct: 273 IVL-YNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRR 331

Query: 179 HLASIREVTCGAAPATKSL---IDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP-- 233
             + ++ +    A  ++ +   +D+  +    E I +  G GMTET+P   +T   +   
Sbjct: 332 FFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRA 391

Query: 234 ----------EAKLGSTGQL---------VMLGYLKNEEATKETVDSEGWLHTGD-VAYY 273
                     E KL   G           V  GY +  E T E  D EG+  +GD V + 
Sbjct: 392 GNIGLPAPGCEVKLVPVGGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFV 451

Query: 274 DED 276
           D  
Sbjct: 452 DPA 454

Length = 614

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 77.9 bits (192), Expect = 8e-16
 Identities = 69/319 (21%), Positives = 121/319 (37%), Gaps = 54/319 (16%)

Query: 14  IGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGV 73
           + + LP  R  IV G   +    ++     + S     + P    +++A    S G+TG 
Sbjct: 142 LQSKLPTLRNIIVAGQTGEAELFLW-----LESPAEPVKFPPTKSDEVAFFQLSGGSTGT 196

Query: 74  PKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV-LSVLPFFHIYGFN--GILNVVM 130
           PK +  +HN+   ++ + V             +Q+T  L  LP  H Y  +  G L V  
Sbjct: 197 PKLIPRTHNDYYYSVRRSVE--------ICWLTQQTRYLCALPAAHNYPLSSPGALGVFY 248

Query: 131 MYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGA 190
             G  ++  P  +P      + ++K T+  +VP  +       + +   L+S++ +  G 
Sbjct: 249 AGGC-VVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRADLSSLKLLQVGG 307

Query: 191 APATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKL------------- 237
           A  + +   +           ++Q +GM E      YTR   P   +             
Sbjct: 308 AKFSAAAARRVPAVF---GCQLQQVFGMAEGLVN--YTRLDDPAEIIFTTQGRPMSPDDE 362

Query: 238 -------------GSTGQLV------MLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGY 278
                        G TG L+        GY K  E      D+EG+ +TGD+     +GY
Sbjct: 363 VRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTPEGY 422

Query: 279 FYIVDRTKELIKVKGNQVA 297
             +V R K+ I   G ++A
Sbjct: 423 IVVVGRAKDQINRGGEKIA 441

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 77.6 bits (192), Expect = 8e-16
 Identities = 79/336 (23%), Positives = 129/336 (38%), Gaps = 82/336 (24%)

Query: 5   PQLLEVGTKIGATLPN-FRGTIVVGGEHDKSKNIFGFK---QLVTSQPPDFQLPKISPND 60
             L +   ++ A LP      +VV G         GF+   + + +QP    +   +   
Sbjct: 91  AALADTAAELAAELPAGVPLLLVVAGPVP------GFRSYEEALAAQPDT-PIADETAGA 143

Query: 61  LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV-LSVLPFFHI 119
             ML YSSGTTG PKG+K        +    +   ++          ++V LS  P +H 
Sbjct: 144 D-ML-YSSGTTGRPKGIKRPLPGLDPDEAPGMMLALLGF--GMYGGPDSVYLSPAPLYHT 199

Query: 120 YGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL---LLFLASHPAVT 176
                 ++ + + G  ++ + KF  E  +  + +Y+ T   +VP++   +L L       
Sbjct: 200 APLRFGMSALAL-GGTVVVMEKFDAEEALALIERYRVTHSQLVPTMFVRMLKL------- 251

Query: 177 PEH------LASIREVTCGAAPATKSLIDKFKQKVQREDI-----TIRQGYGMTETSPCT 225
           PE       ++S+R     AAP           +V+R  I      I + Y  +E    T
Sbjct: 252 PEEVRARYDVSSLRVAIHAAAP--------CPVEVKRAMIDWWGPIIHEYYASSEGGGVT 303

Query: 226 LYTRFAIPE---AKLGSTGQLVM-----------------LG------------YLKNEE 253
           + T     E   A  GS G+ V+                 +G            Y  + E
Sbjct: 304 VIT----SEDWLAHPGSVGKAVLGEVRILDEDGNELPPGEIGTVYFEMDGYPFEYHNDPE 359

Query: 254 ATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELI 289
            T    +  GW+  GDV Y DEDGY Y+ DR  ++I
Sbjct: 360 KTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMI 395

Length = 502

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 77.4 bits (190), Expect = 1e-15
 Identities = 85/325 (26%), Positives = 134/325 (41%), Gaps = 86/325 (26%)

Query: 51  FQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV 110
           + LP    +D+  + Y+SGTTG PKGV +S+ +    +   +   ++     + T ++  
Sbjct: 215 YDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAGVIR--LLKSANAALTVKDVY 272

Query: 111 LSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLL--- 167
           LS LP  HI  F+ ++    +     I   +   +  IE + + KPTI   VP +L    
Sbjct: 273 LSYLPLAHI--FDRVIEECFIQHGAAIGFWRGDVKLLIEDLGELKPTIFCAVPRVLDRVY 330

Query: 168 -----------FLA-------------------SHPAVTP--EHL----------ASIRE 185
                      FL                    SH   +P  + L           ++R 
Sbjct: 331 SGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRI 390

Query: 186 VTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYT----------------- 228
           +  GAAP   S ++ F + V      + QGYG+TE+   T  +                 
Sbjct: 391 ILSGAAPLA-SHVESFLRVVAC--CHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPN 447

Query: 229 ---RF-AIPEAK---LGST--------GQLVMLGYLKNEEATKETVDSEGWLHTGDVAYY 273
              R  ++PE +   L ST        G+ +  GY K E+ TKE V  +GWLHTGDV  +
Sbjct: 448 VDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKREDLTKE-VLIDGWLHTGDVGEW 506

Query: 274 DEDGYFYIVDRTKELIKV-KGNQVA 297
             +G   I+DR K + K+ +G  VA
Sbjct: 507 QPNGSMKIIDRKKNIFKLSQGEYVA 531

Length = 666

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 77.3 bits (190), Expect = 1e-15
 Identities = 58/284 (20%), Positives = 94/284 (33%), Gaps = 56/284 (19%)

Query: 56  ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLP 115
           +  + LA + Y+SG+TG PKGV++ H     NL      D           +   L+ L 
Sbjct: 363 LLGDALAYIIYTSGSTGQPKGVRIEHRA-LANLLN----DAGARFGLDADDRVLALASLS 417

Query: 116 F----FHIYGFNGILN---VVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLF 168
           F    F I+G   +L    +V+   +         P   +E +     T+L +VP LL  
Sbjct: 418 FDASVFEIFG--ALLEGARLVLAPALLQ-----VDPAALLELLEAQGITVLLLVPLLLRL 470

Query: 169 LASHPAVT--PEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTL 226
           L               +R++  G      +L+ +  Q        +   YG TE +    
Sbjct: 471 LLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAA-LARRLLNLYGPTEAT--LD 527

Query: 227 YTRFAIPEAKLGS--------------------------------TGQLVMLGYLKNEEA 254
              F I                                        G  + LGYL   + 
Sbjct: 528 APSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDL 587

Query: 255 TKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           T E   +     TGD+A    DG    + R    +K++G ++  
Sbjct: 588 TAERFIALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIEL 631

Length = 642

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 76.4 bits (188), Expect = 2e-15
 Identities = 68/269 (25%), Positives = 123/269 (45%), Gaps = 46/269 (17%)

Query: 59  NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
           +D+A++ ++SGTTG+PKG    H +  + +       ++   PT D   +  +   P   
Sbjct: 147 DDVALIGFTSGTTGLPKGTMHFHRD-ILAICDAFPRHVLQ--PTPD---DVFIGSPPLAF 200

Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
            +G  G++   + +G   + + + TP   ++ + +++ TILF  P+   + A    V   
Sbjct: 201 TFGLGGLVLFPLRFGASAVLLEQATPPLLLKAIQEHRATILFTAPTA--YRAMLIKVKAF 258

Query: 179 HLASIREVTCGAAPATKSLIDK-FKQKVQREDITIRQGYGMTE------------TSPCT 225
            ++S+R+       A ++L  K ++   +R  + I  G G TE              P  
Sbjct: 259 DISSLRK----CVSAGETLPAKVWQDWYERTGLKIIDGIGATEMLHIFISANEENAKPGA 314

Query: 226 LYTRFAIP--EAKL----------GSTGQLVMLG-----YLKNEEATKETVDSEGWLHTG 268
             T   +P  EA++          G  G+L + G     YL ++E  +E V  +GW  TG
Sbjct: 315 --TGKPVPGYEARIVDDQGNEVPRGEAGRLAVRGPTGCRYL-DDERQQEYV-RDGWNVTG 370

Query: 269 DVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
           D+   DEDGYF+ V R+ ++I   G  +A
Sbjct: 371 DIFRQDEDGYFHYVARSDDMIVSAGYNIA 399

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 75.9 bits (188), Expect = 2e-15
 Identities = 71/281 (25%), Positives = 111/281 (39%), Gaps = 60/281 (21%)

Query: 58  PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF 117
           P+DLA + Y+SG+TG PKGV + H    VNL   +   +        T+ + VL     F
Sbjct: 92  PDDLAYVIYTSGSTGRPKGVMVEHRG-LVNL---LA-WLQERYG--LTAGDRVL----QF 140

Query: 118 HIYGFN-GILNVVM--MYGMHMITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLAS 171
             + F+  +  +    + G  ++  P      PE   E + +++ T+L +VPSLL  L  
Sbjct: 141 ASFSFDASVWEIFPPLLSGATLVLAPPEVLRDPEALAELLREHRITVLHLVPSLLRALLD 200

Query: 172 HPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLY---- 227
                P  L S+R V  G       L+ ++++        +   YG TET+    Y    
Sbjct: 201 ALE--PAALPSLRLVIVGGEALPAELVRRWRELFP--GARLVNAYGPTETTVDVTYHEVD 256

Query: 228 -----------------TRFAIPEAKL-----GSTGQL------VMLGYLKNEEATKE-- 257
                            TR  + +  L     G  G+L      V  GYL   E T E  
Sbjct: 257 PDDLDGGSVPIGRPIANTRVYVLDEDLRPVPVGVPGELYIGGAGVARGYLNRPELTAERF 316

Query: 258 -----TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
                    E    TGD+A +  DG    + R  + +K++G
Sbjct: 317 VPDPFGGPGERLYRTGDLARWLPDGNLEFLGRADDQVKIRG 357

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 75.1 bits (185), Expect = 6e-15
 Identities = 73/298 (24%), Positives = 111/298 (37%), Gaps = 73/298 (24%)

Query: 48  PPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCA---VNLEQ--CVHPDIVNHIPT 102
            P F++    P+DL ML ++SGT+G PK V+ +H   A   V L Q   + PD       
Sbjct: 143 EPPFRVA--DPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRFGLGPD------- 193

Query: 103 SDTSQETVLSVLPFFHIYGFNGIL---NVVMMYGMHMITIPKFTPETYIECVVKYKPTIL 159
                +     +P FH    N ++    V +  G  +    KF+   ++  V +Y  T  
Sbjct: 194 -----DVCYVSMPLFHS---NAVMAGWAVALAAGASIALRRKFSASGFLPDVRRYGATYA 245

Query: 160 FVVPSLLLFLASHPAVTPEHLASIREV--TCGAAPATKSLIDKFKQKVQREDITIRQGYG 217
             V   L ++ + P    +    +R V    GA       I +F    +R    +  G+G
Sbjct: 246 NYVGKPLSYVLATPERPDDADNPLRIVYGNEGAPGD----IARF---ARRFGCVVVDGFG 298

Query: 218 MTE----------TSPCTL------------YTRFAIPEAKLGS---------TGQLVML 246
            TE          T P  L             T    P A+             G+LV  
Sbjct: 299 STEGGVAITRTPDTPPGALGPLPPGVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNT 358

Query: 247 -------GYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
                  GY  + EA  E +   G   +GD+AY D DGY Y   R  + ++V G  + 
Sbjct: 359 AGPGGFEGYYNDPEADAERM-RGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLG 415

Length = 529

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 73.3 bits (180), Expect = 3e-14
 Identities = 63/265 (23%), Positives = 107/265 (40%), Gaps = 50/265 (18%)

Query: 67  SSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGIL 126
           +SGTTG PKG + S       L+      I++  P    ++E  + V P FH +GF+ ++
Sbjct: 204 TSGTTGTPKGARRSGPGGIGTLKA-----ILDRTPWR--AEEPTVIVAPMFHAWGFSQLV 256

Query: 127 NVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPA--VTPEHLASIR 184
               +    ++T  +F PE  ++ + +++ T L VVP +   +   PA         S+R
Sbjct: 257 LAASL-ACTIVTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLR 315

Query: 185 EVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYT----RFAI------PE 234
                 +     ++  F  +    D+ I   Y  TE       T    R A        E
Sbjct: 316 FAAASGSRMRPDVVIAFMDQFG--DV-IYNNYNATEAGMIATATPADLRAAPDTAGRPAE 372

Query: 235 AKL-------------GSTGQLVMLGYLKNEE--------ATKETVDSEGWLHTGDVAYY 273
                           G  G +    +++N+         +TK+  D  G++ +GDV Y 
Sbjct: 373 GTEIRILDQDFREVPTGEVGTI----FVRNDTQFDGYTSGSTKDFHD--GFMASGDVGYL 426

Query: 274 DEDGYFYIVDRTKELIKVKGNQVAP 298
           DE+G  ++V R  E+I   G  V P
Sbjct: 427 DENGRLFVVGRDDEMIVSGGENVYP 451

Length = 537

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 72.5 bits (178), Expect = 3e-14
 Identities = 66/286 (23%), Positives = 107/286 (37%), Gaps = 63/286 (22%)

Query: 58  PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF 117
            +DL    Y+SGTTG+PKGV +  N  A       +  +   I   D   + V     F+
Sbjct: 87  DDDLFAQMYTSGTTGLPKGVPVPLNALAA-----FYAYMRYAI---DLRDDDV-----FW 133

Query: 118 HI------YGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKPTILFVVPSLLLFLA 170
           +I      YG    +   +  G+  + +   FT E   + + +   T     P+    L 
Sbjct: 134 NIADPGWAYGLYYAITGPLAMGITTVFLEGGFTAENTYDVLERLGVTNFAGSPTAYRMLM 193

Query: 171 SH--PAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS-PCTLY 227
           +    A     L  +R  +    P    ++  F+  +    +TI   YG TET  P   +
Sbjct: 194 AAGADAAARIKL-KLRVASSAGEPLNPEVVRWFQANL---GVTIHDHYGQTETGMPVGNH 249

Query: 228 TRFAIPEAKLGSTG------QLVML----------------------------GYLKNEE 253
              A  E + GS G      ++ +L                            GY  + E
Sbjct: 250 HALAH-EVRAGSMGLPLPGYRIAVLDDDGQPLADGEPGQLAIDVASSPLLWFSGYWDDPE 308

Query: 254 ATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
            T E +    W  TGD+   DEDGYF+ + R  ++I   G ++ P+
Sbjct: 309 KTAELIAG-RWYVTGDLVERDEDGYFWFIGRADDVIISAGYRIGPF 353

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 72.4 bits (178), Expect = 5e-14
 Identities = 76/332 (22%), Positives = 115/332 (34%), Gaps = 80/332 (24%)

Query: 8   LEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYS 67
           L+V   +    P  R  +V+ G+  + +   G+ + V   P    +   S     ML YS
Sbjct: 107 LDVARALLKQCPGVRHRLVLDGD-GELEGFVGYAEAVAGLPAT-PIADESLGT-DML-YS 162

Query: 68  SGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD--------TSQETVLSVLPFFHI 119
           SGTTG PKG+K                     +P +          S    LS  P +H 
Sbjct: 163 SGTTGRPKGIK----------RPLPEQPPDTPLPLTAFLQRLWGFRSDMVYLSPAPLYHS 212

Query: 120 --YGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTP 177
                     +V+  G  +I +  F  E Y+  + +Y  T   +VP++   +   P    
Sbjct: 213 APQRAVM---LVIRLGGTVIVMEHFDAEQYLALIEEYGVTHTQLVPTMFSRMLKLPEEVR 269

Query: 178 EH--LASIREVTCGAAPATKSLIDKFKQKVQREDI-----TIRQGYGMTETSPCTLYTRF 230
           +   L+S+      AAP           +V+ + I      I + Y  TE    T     
Sbjct: 270 DKYDLSSLEVAIHAAAPC--------PPQVKEQMIDWWGPIIHEYYAATEGLGFT----A 317

Query: 231 AIPE---AKLGSTGQLVMLG-----------------------------YLKNEEATKET 258
              E   A  G+ G+  M G                             YL +   T E 
Sbjct: 318 CDSEEWLAHPGTVGR-AMFGDLHILDDDGAELPPGEPGTIWFEGGRPFEYLNDPAKTAEA 376

Query: 259 VDSEG-WLHTGDVAYYDEDGYFYIVDRTKELI 289
              +G W   GD+ Y DEDGY Y+ DR   +I
Sbjct: 377 RHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMI 408

Length = 511

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 63/275 (22%), Positives = 101/275 (36%), Gaps = 70/275 (25%)

Query: 57  SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV------ 110
           S +DL ML Y+ GTTG+PKGV     +    L     PD     PT +   + V      
Sbjct: 2   SADDLYML-YTGGTTGMPKGVMWRQEDIFRVLL--GGPDFATGEPTLEELAKQVAAGGAG 58

Query: 111 ---LSVLPFFHIYGFNGILNVVMMYGMHMITIP--KFTPETYIECVVKYKPTILFVV--- 162
              L   P  H  G    L+  +  G  ++ +P  KF P+     V K++   L +V   
Sbjct: 59  TRFLPACPLMHGAGQWLALSA-LFAGGTVVLLPDDKFDPDRVWRTVEKHRVNTLVIVGDA 117

Query: 163 ---PSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQRE------DITIR 213
              P     L +  A     L+S+R ++   A         +  +V++       ++ + 
Sbjct: 118 FARP----LLEALEAAGRYDLSSLRAISSSGAM--------WSPEVKQGLLELLPNLALV 165

Query: 214 QGYGMTETSPCTLYT----------RFAI-PEAKL------------GSTGQL-----VM 245
              G +ET                 +F + P+  +            G  G +     V 
Sbjct: 166 DALGASETGGGGSSVSRAGGASATGKFELGPDTVVLDEDGSEVPPGSGEVGWIARGGRVP 225

Query: 246 LGYLKNEEATKET---VDSEGWLHTGDVAYYDEDG 277
           LGY K+ E T +T   +D   +   GD A  + DG
Sbjct: 226 LGYYKDPEKTAKTFREIDGVRYAVPGDFARVEADG 260

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 69.7 bits (170), Expect = 4e-13
 Identities = 70/282 (24%), Positives = 108/282 (38%), Gaps = 56/282 (19%)

Query: 59  NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
           +D   L Y+SGTT  PKGV +SH    ++    +    +   P         L  LP FH
Sbjct: 186 HDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGWEMGTCPV-------YLWTLPMFH 238

Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
             G+          G  +       PE Y + +  +  T +  VP++   L    ++   
Sbjct: 239 CNGWTFTWGTAARGGTSVCMRHVTAPEIY-KNIEMHNVTHMCCVPTVFNILLKGNSLDLS 297

Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA-----IP 233
             +    V  G +P   +L+    +KVQR    +   YG+TE +   L+  +      +P
Sbjct: 298 PRSGPVHVLTGGSPPPAALV----KKVQRLGFQVMHAYGLTEATGPVLFCEWQDEWNRLP 353

Query: 234 E-------------------------------AKLGST-------GQLVMLGYLKNEEAT 255
           E                                + G T       G  +M GYLKN +AT
Sbjct: 354 ENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKAT 413

Query: 256 KETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
            E     GWL+TGDV     DG+  I DR+K++I   G  ++
Sbjct: 414 SEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENIS 454

Length = 579

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 68.9 bits (168), Expect = 6e-13
 Identities = 82/300 (27%), Positives = 120/300 (40%), Gaps = 67/300 (22%)

Query: 49  PDFQLPKISPN-----DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV-----N 98
            D      + +      LAM+ ++SGTTG PK V L+      N      PDI+     N
Sbjct: 155 LDAASLAGNADQGSEDPLAMI-FTSGTTGEPKAVLLA------NRTFFAVPDILQKEGLN 207

Query: 99  HIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTI 158
            +       ET  S LP  HI G   IL   +M+G   +T  + T  + +E +       
Sbjct: 208 WVTWVVG--ETTYSPLPATHIGGLWWILTC-LMHGGLCVTGGENT-TSLLEILTTNAVAT 263

Query: 159 LFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGM 218
             +VP+LL  L S        + S+R V  G + A  + + +F   ++   +   Q YG+
Sbjct: 264 TCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADV-RF---IEATGVRTAQVYGL 319

Query: 219 TETSPCT-------------------------LYTRFAIPE---------AKLGSTGQLV 244
           +ET  CT                         +    A  +             S G L 
Sbjct: 320 SETG-CTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLW 378

Query: 245 ------MLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
                 MLGY  N E T E V  +GW++TGD+    EDG+FYI  R+ E+I   G  +AP
Sbjct: 379 IKSPANMLGYWNNPERTAE-VLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAP 437

Length = 540

>gnl|CDD|236443 PRK09274, PRK09274, peptide synthase; Provisional

 Score = 68.8 bits (169), Expect = 8e-13
 Identities = 55/231 (23%), Positives = 88/231 (38%), Gaps = 44/231 (19%)

Query: 25  IVVGGEHDKSKNIFGFKQLVT----SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLS 80
           + VGG     + ++G   L T         F +  ++P+D+A + ++SG+TG PKGV  +
Sbjct: 141 VTVGG-----RLLWGGTTLATLLRDGAAAPFPMADLAPDDMAAILFTSGSTGTPKGVVYT 195

Query: 81  HNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP 140
           H      +E      +           E  L   P F       +    +  GM  + IP
Sbjct: 196 HGMFEAQIEA-----LREDYG--IEPGEIDLPTFPLF------ALFGPAL--GMTSV-IP 239

Query: 141 KF--------TPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAP 192
                      P      + +Y  T LF  P+LL  L  +       L S+R V    AP
Sbjct: 240 DMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAP 299

Query: 193 ATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQL 243
              ++I++F + +   D  I   YG TE          A+P + + S   L
Sbjct: 300 VPIAVIERF-RAMLPPDAEILTPYGATE----------ALPISSIESREIL 339

Length = 552

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 68.2 bits (167), Expect = 8e-13
 Identities = 68/291 (23%), Positives = 110/291 (37%), Gaps = 78/291 (26%)

Query: 58  PNDLAMLPYSSGTTGVPKGVKLSHNN---------CAVNLEQCVHPDIVNHIPTSDTSQE 108
            +D  +L ++SGTTG+PK V  +H +           + L+    P  ++   +S    +
Sbjct: 83  ADDPILLYFTSGTTGLPKLVLHTHVSYPVGHLSTMYWIGLQ----PGDIHLNISSPGWAK 138

Query: 109 TVLSVLPFFH-------IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFV 161
              S   FF        ++G N                P+F    Y+  + K+  T    
Sbjct: 139 HAWS--SFFAPWNAGATVFGIN---------------YPRFDARRYLGALEKFGVTTFCA 181

Query: 162 VPSLL-LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTE 220
            P++  +F+    A     L   RE      P    +I++ K+      +TIR GYG TE
Sbjct: 182 PPTVWRMFIQQDLAQYDVRL---REAVSAGEPLNPEVIERVKKAW---GLTIRDGYGQTE 235

Query: 221 TS------------------PCTLYTRFAIPEA--------------KLGSTGQLVMLGY 248
           T+                  P   Y R  + +                LG     +MLGY
Sbjct: 236 TTAMIGNSPGQKVKPGSMGRPLPGY-RVVLLDDEGKEIPVTEGEIALDLGDRPIGLMLGY 294

Query: 249 LKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
           + + E T       G+  TGD AY DEDGY + V R  ++ K    +++P+
Sbjct: 295 MGDPEKTAA-AFRGGYYRTGDKAYRDEDGYLWFVGRADDVFKSSDYRISPF 344

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 68.0 bits (167), Expect = 1e-12
 Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 16/138 (11%)

Query: 34  SKNIFGFKQLVT---SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQ 90
           +  ++ F++L             PK  P DLA + Y+SGTTG PKGV L+H N    +  
Sbjct: 85  AVKVYSFEELEELGKKNKVPPTPPK--PEDLATIMYTSGTTGNPKGVMLTHGNIVAGVAG 142

Query: 91  CVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETY--I 148
                    +P      +  +S LP  HI+    + NV +  G     I  ++ +T    
Sbjct: 143 INK-----IVPEFIGPTDVYISYLPLAHIFERV-VENVCLYIGG---RIGYYSGDTRGLK 193

Query: 149 ECVVKYKPTILFVVPSLL 166
             + + KPT+   VP +L
Sbjct: 194 GDIKELKPTVFVGVPRVL 211

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 76/295 (25%), Positives = 114/295 (38%), Gaps = 55/295 (18%)

Query: 25  IVVGGEHDKSKNIFGFKQLVTSQPPDF---QLPKISPNDLAMLPYSSGTTGVPKGVKLSH 81
           + V G  +   +I  F  L  + P       +  I+P+ +A   ++SG+TG+PK V  + 
Sbjct: 184 VHVTGPGEGIASI-AFADLAATPPTAAVAAAIAAITPDTVAKYLFTSGSTGMPKAVINTQ 242

Query: 82  NNCAVNL---EQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHM-I 137
                N+   EQ    +     P S       L  +P+ H  G N   N ++  G  + I
Sbjct: 243 RMMCANIAMQEQLRPREPDPPPPVS-------LDWMPWNHTMGGNANFNGLLWGGGTLYI 295

Query: 138 TIPKFTP---ETYIECVVKYKPTILFVVPSLLLFLASH----PAVTPEHLASIREVTCGA 190
              K  P   E  I  + +  PT+   VP+    LA       A+      ++R +  G 
Sbjct: 296 DDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGG 355

Query: 191 APATKSLIDKFKQKVQR-------EDITIRQGYGMTETSPCTLYTRFA--------IP-- 233
           A    +L D   +++Q          I    GYG TET+P T  T +         +P  
Sbjct: 356 A----TLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLP 411

Query: 234 --EAKL---GST------GQLVMLGYLKNEEATKETVDSEGWLHTGDVA-YYDED 276
             E KL   G        G  V  GY K+ E T    D EG+   GD A + D D
Sbjct: 412 GVELKLAPVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPD 466

Length = 624

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 64/283 (22%), Positives = 107/283 (37%), Gaps = 57/283 (20%)

Query: 54  PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNL----EQCVHPDIVNHIPTSDTSQET 109
           P     ++A    S GTTG PK +  +HN+   ++    E C               Q+T
Sbjct: 184 PPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYSVRASAEIC------------GFDQQT 231

Query: 110 V-LSVLPFFHIYGFN--GILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLL 166
           V L  LP  H +  +  G L V  + G  ++  P  +PE     + ++  T+  +VP L 
Sbjct: 232 VYLCALPAAHNFPLSSPGALGV-FLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLA 290

Query: 167 LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTL 226
                        L+S+R +  G A  + +L  +    +      ++Q +GM E      
Sbjct: 291 SLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVL---GCQLQQVFGMAEGLVN-- 345

Query: 227 YTRFAIPEAKL--------------------------GSTGQLV------MLGYLKNEEA 254
           YTR   P   +                          G  G+L+      + GY +  E 
Sbjct: 346 YTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEH 405

Query: 255 TKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
                D++G+  +GD+   D DGY  +  R K+ I   G ++A
Sbjct: 406 NARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIA 448

Length = 542

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 67.6 bits (166), Expect = 2e-12
 Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 17/93 (18%)

Query: 48  PPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQ 107
             D++ P   P+D+A L Y+SG+TG PKGV ++H N   NL       I           
Sbjct: 137 AADWRPPPPDPDDIAFLQYTSGSTGAPKGVMVTHGNLLANLRA-----IARA--FGLDPD 189

Query: 108 ETVLSVLPFFH----IYG-----FNGILNVVMM 131
           +  +S LP +H    I G     + G   VV+M
Sbjct: 190 DVGVSWLPLYHDMGLIGGLLQPLYAGFP-VVLM 221

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 71/271 (26%), Positives = 105/271 (38%), Gaps = 59/271 (21%)

Query: 64  LPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN 123
           L Y+SGTT  PKGV L H    +     +   ++  +          L  LP FH  G+ 
Sbjct: 200 LGYTSGTTASPKGVVLHHRGAYL---MALSNALIWGMNEG----AVYLWTLPMFHCNGWC 252

Query: 124 GILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV-TPEHLAS 182
               +  + G + I + + T +     +  Y  T     P +L  + + P   T   L  
Sbjct: 253 FTWTLAALCGTN-ICLRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPR 311

Query: 183 IREV-TCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET-SPCT--------------- 225
           +  V T GAAP   S++    +K  R    +   YG++ET  P T               
Sbjct: 312 VVHVMTAGAAP-PPSVLFAMSEKGFR----VTHTYGLSETYGPSTVCAWKPEWDSLPPEE 366

Query: 226 ---LYTRFAI-----------------PEAKLGST-------GQLVMLGYLKNEEATKET 258
              L  R  +                 P    G T       G +VM GYLKN +A +E 
Sbjct: 367 QARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEA 426

Query: 259 VDSEGWLHTGDVAYYDEDGYFYIVDRTKELI 289
             + GW H+GD+     DGY  I DR+K++I
Sbjct: 427 F-ANGWFHSGDLGVKHPDGYIEIKDRSKDII 456

Length = 567

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 67/305 (21%), Positives = 109/305 (35%), Gaps = 68/305 (22%)

Query: 40  FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCA----VNLEQCVHPD 95
           + +LV +        ++   D  ML ++SGTTG PK V+ SH   A       E+     
Sbjct: 131 YAELVAAAGALTPHREVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERFGL-- 188

Query: 96  IVNHIPTSDTSQETVLSVLPFFHIYGFNGIL---NVVMMYGMHMITIPKFTPETYIECVV 152
                    T  +     +P FH    N ++      +  G  +    KF+   +++ V 
Sbjct: 189 ---------TRDDVCYVSMPLFH---SNAVMAGWAPAVASGAAVALPAKFSASGFLDDVR 236

Query: 153 KYKPTIL-FVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT 211
           +Y  T   +V   L   LA     TPE      +     A   ++      +  +R    
Sbjct: 237 RYGATYFNYVGKPLAYILA-----TPER-PDDADNPLRVAFGNEASPRDIAEFSRRFGCQ 290

Query: 212 IRQGYGMTE----------TSPCTL------------YTRFAIPEAKLGSTGQLV----- 244
           +  GYG +E          T P ++             T      A+  + G L+     
Sbjct: 291 VEDGYGSSEGAVIVVREPGTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEA 350

Query: 245 ------------MLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
                         GY  N EAT E +   G   +GD+AY D DG+ Y   RT + ++V 
Sbjct: 351 IGELVNTAGAGFFEGYYNNPEATAERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRVD 409

Query: 293 GNQVA 297
           G  ++
Sbjct: 410 GENLS 414

Length = 540

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 66.3 bits (162), Expect = 5e-12
 Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 33/123 (26%)

Query: 211 TIRQGYGMTETS--------------------PCTLYTRFAIPEAKLGST---------- 240
            + +GYGMTETS                    P        +PE    S           
Sbjct: 403 RVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEIC 462

Query: 241 --GQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKV-KGNQVA 297
             G ++  GY K+E  T+E +D +GWLHTGD+  +   G   I+DR K + K+ +G  +A
Sbjct: 463 VRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIA 522

Query: 298 PYK 300
           P K
Sbjct: 523 PEK 525

Length = 651

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 34/107 (31%), Positives = 42/107 (39%), Gaps = 30/107 (28%)

Query: 214 QGYGMTETSPC-------TLYTRFAIP-----EAKLGST------------------GQL 243
           QG+G+TET  C        L            E KL  T                  G  
Sbjct: 457 QGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPF 516

Query: 244 VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIK 290
           +  GY K EE T+E +D +GW HTGDV     +G   I+ R K L K
Sbjct: 517 LFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAK 563

Length = 700

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 79/326 (24%), Positives = 125/326 (38%), Gaps = 86/326 (26%)

Query: 50  DFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQET 109
           D +LP     D+  + Y+SGTTG PKGV L   N A+  E      ++       T +++
Sbjct: 211 DCELPPKQKTDICTIMYTSGTTGEPKGVIL--TNRAIIAEVLSTDHLLKVTDRVATEEDS 268

Query: 110 VLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLL--- 166
             S LP  H+Y  + ++    +     I   +      +E V   KPTI   VP +    
Sbjct: 269 YFSYLPLAHVY--DQVIETYCISKGASIGFWQGDIRYLMEDVQALKPTIFCGVPRVYDRI 326

Query: 167 -----------------LF-------LASHPAVTPEHLAS------------------IR 184
                            LF       L +      +  AS                  +R
Sbjct: 327 YTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVR 386

Query: 185 EVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTE------TSPCTLYTRFA---IP-- 233
            +  GAAP  +  +++F +        + QGYG+TE      TS   +++      +P  
Sbjct: 387 LLLSGAAPLPRH-VEEFLRVTSCS--VLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMT 443

Query: 234 --EAKLGST-------------------GQLVMLGYLKNEEATKETVDSEGWLHTGDVAY 272
             EA+L S                    G  +  GY K ++ T+E V  +GW HTGD+  
Sbjct: 444 TIEARLESVPEMGYDALSDVPRGEICLRGNTLFSGYHKRQDLTEE-VLIDGWFHTGDIGE 502

Query: 273 YDEDGYFYIVDRTKELIKV-KGNQVA 297
           +  +G   I+DR K + K+ +G  VA
Sbjct: 503 WQPNGAMKIIDRKKNIFKLSQGEYVA 528

Length = 660

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score = 64.1 bits (156), Expect = 2e-11
 Identities = 77/325 (23%), Positives = 126/325 (38%), Gaps = 55/325 (16%)

Query: 16  ATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQP-PDFQLPKISPNDLAMLPYSSGTTGVP 74
            T   +  T+ VGG+   S           ++P P    P+    D AM+ ++ GTTG+P
Sbjct: 132 PTTRWWPLTVNVGGDSGPSGGTLSVHLDAATEPTPATSTPEGLRPDDAMIMFTGGTTGLP 191

Query: 75  KGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM 134
           K V  +H N A +    V   I+     S   ++  ++V+P +H +G    L   +  G 
Sbjct: 192 KMVPWTHANIASS----VR-AIITGYRLSP--RDATVAVMPLYHGHGLIAALLATLASG- 243

Query: 135 HMITIP---KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV--TPEHLASIREVTCG 189
             + +P   +F+  T+ + +     T    VP++   L    A   +    A++R +   
Sbjct: 244 GAVLLPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSC 303

Query: 190 AAPATKSLIDKFKQKVQRE-DITIRQGYGMTET-----------SPCT--------LYTR 229
           +AP T        Q +Q E    +   +GMTE               T        L  R
Sbjct: 304 SAPLTAET----AQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGR 359

Query: 230 FAIPEAKL-GSTGQ---------------LVMLGYLKNEEATKETVDSEGWLHTGDVAYY 273
               + ++ GS G                 V+ GYL +   T     ++GWL TGD+   
Sbjct: 360 STGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANF-TDGWLRTGDLGSL 418

Query: 274 DEDGYFYIVDRTKELIKVKGNQVAP 298
              G   I  R KELI   G +++P
Sbjct: 419 SAAGDLSIRGRIKELINRGGEKISP 443

Length = 534

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 59/288 (20%), Positives = 95/288 (32%), Gaps = 75/288 (26%)

Query: 60  DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHI 119
           D A + ++SG+TG PKGV  +H   A  +      D +  +       +  L+  P F  
Sbjct: 86  DPAAILFTSGSTGPPKGVVYTHRTFAAQI------DALRSL-YGIREGDRDLAAFPPF-- 136

Query: 120 YGFNGILNVVMMYGMHMITIPKF--------TPETYIECVVKYKPTILFVVPSLLLFLAS 171
                +    +  G+  + IP           P    + + +   + +F  P+LL  +A 
Sbjct: 137 ----ALFGPAL--GVTTV-IPAMDPTAPAALDPAKLAQAIREIGASCVFGSPALLKNVAR 189

Query: 172 HPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT------ 225
           +       L S+R V    AP    L+ +F   +   +  I   YG TE  P        
Sbjct: 190 YCEENGIQLPSLRRVLSAGAPVPPDLLRRFVANLM-PEAEIHTPYGATEALPVASIEGRE 248

Query: 226 -LYTRFAIPEA----------------------------------KLGSTGQLVMLG--- 247
            L      PEA                                    G  G++++ G   
Sbjct: 249 VLAESAEPPEAGAGVCVGHPVPGIDVRIIPIDDGPIASWDDDIELPPGEVGEIIVSGPHV 308

Query: 248 ---YLKNEEATKET--VDSEGWLH-TGDVAYYDEDGYFYIVDRTKELI 289
              Y    EATK     D     H  GD+ Y+D+ G  +   R    +
Sbjct: 309 TREYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGRKAHRV 356

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 63.2 bits (154), Expect = 5e-11
 Identities = 72/331 (21%), Positives = 116/331 (35%), Gaps = 69/331 (20%)

Query: 16  ATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKIS---------PNDLAMLPY 66
             LP  R   VV    D +            Q      P            P+  A+L  
Sbjct: 132 DALPPLRAIAVVDDAADATPAPAPG---ARVQLFALPDPAPPAAAGERAADPDAGALLFT 188

Query: 67  SSGTTGVPKGV-----KLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYG 121
           +SGTT  PK V      L  +  A+       P  V            +L+ LPF  ++G
Sbjct: 189 TSGTTSGPKLVLHRQATLLRHARAIARAYGYDPGAV------------LLAALPFCGVFG 236

Query: 122 FNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLL-LFLASHPAVTPEHL 180
           F+ +L   +  G  ++  P F        + +++ T  F    +L   L +         
Sbjct: 237 FSTLLGA-LAGGAPLVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTAGERAD--F 293

Query: 181 ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTE----------TSPCTLYT-- 228
            S R    G A    +L  +     +   + +   YG +E          T P ++    
Sbjct: 294 PSAR--LFGFASFAPAL-GELAALARARGVPLTGLYGSSEVQALVALQPATDPVSVRIEG 350

Query: 229 --RFAIPEAKL-------------GSTGQL------VMLGYLKNEEATKETVDSEGWLHT 267
             R A PEA++             G +G++      +M GYL N +AT   +  +G+  T
Sbjct: 351 GGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRT 410

Query: 268 GDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           GD+ Y   DG F    R  + +++ G  V P
Sbjct: 411 GDLGYTRGDGQFVYQTRMGDSLRLGGFLVNP 441

Length = 540

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 69/301 (22%), Positives = 104/301 (34%), Gaps = 81/301 (26%)

Query: 47  QPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTS 106
           +      P +  +DLA + Y+SG+TG PKGV + H    V L    + + +     +   
Sbjct: 115 EDAGPPAPAVDADDLAYVMYTSGSTGRPKGVAVPHRG-VVRL--VRNTNYI-----ALDP 166

Query: 107 QETVL--SVLPF----FHIYGFNGILNVVMMYGMHMITIPKFTPET------YIECVVKY 154
            +  L  S L F    F I+G   +LN     G  ++ I K T          I      
Sbjct: 167 DDRFLQLSPLSFDASTFEIWG--ALLN-----GGRLVLIDKETLLDPDRLARLIAE---Q 216

Query: 155 KPTILFVVPSLLLFLASHPAVTPEHLASIREVTCG--AAPATKSLIDKFKQKVQREDITI 212
             T+L++  +L   L       PE LA +R++  G        + + +         + +
Sbjct: 217 GVTVLWLTAALFNQLVDE---DPEALAGLRQLLVGGDVLSP--AHVRRVLAACPG--LRL 269

Query: 213 RQGYGMTETSPCTLYTRFAIPEAK-------------------LGSTGQLV--------- 244
             GYG TE +  T  T   I                       L   GQ V         
Sbjct: 270 INGYGPTENT--TFSTCHVITRLDEAADSIPIGRPIPNTTVYILDEEGQPVPIGVPGELY 327

Query: 245 ------MLGYLKNEEATKE------TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
                  LGYL   E T E          E    TGD+A +  DG    + R    +K++
Sbjct: 328 VGGDGLALGYLNRPELTAERFVPDPFGPGERLYRTGDLARWRPDGNIEFLGRIDRQVKIR 387

Query: 293 G 293
           G
Sbjct: 388 G 388

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 61.7 bits (150), Expect = 2e-10
 Identities = 74/295 (25%), Positives = 107/295 (36%), Gaps = 82/295 (27%)

Query: 56   ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHI-PTSDTSQETVLSVL 114
            ++P +LA + Y+SG+TG PKG    H              +VN +  T +  Q +   V+
Sbjct: 1715 LAPQNLAYVIYTSGSTGRPKGAGNRHGA------------LVNRLCATQEAYQLSAADVV 1762

Query: 115  PFFHIYGF------------NGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVV 162
              F  + F            NG   V+   G H        PE  I+ + + + T L  V
Sbjct: 1763 LQFTSFAFDVSVWELFWPLINGARLVIAPPGAHR------DPEQLIQLIERQQVTTLHFV 1816

Query: 163  PSLLLFLASHPAVTPEHLASIREVTCG--AAPATKSLIDKFKQKVQR-EDITIRQGYGMT 219
            PS+L  L        EH  S+R V CG  A        +  +  ++R  D  +   YG T
Sbjct: 1817 PSMLQQLLQMDEQV-EHPLSLRRVVCGGEALEV-----EALRPWLERLPDTGLFNLYGPT 1870

Query: 220  ETS------PCTL-------YTRFAIPEAKL--------------GSTGQL------VML 246
            ET+       C               P A L              G  G+L      +  
Sbjct: 1871 ETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVPIGVAGELYLGGVGLAR 1930

Query: 247  GYLKNEEATKE--------TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
            GYL     T E        TV S  +  TGD+A Y  DG    + R    +K++G
Sbjct: 1931 GYLNRPALTAERFVADPFGTVGSRLY-RTGDLARYRADGVIEYLGRIDHQVKIRG 1984

Length = 3956

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 62/302 (20%), Positives = 106/302 (35%), Gaps = 73/302 (24%)

Query: 56  ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLP 115
           + P+D A L Y+SGTTG+PKG  +S     V     +  D+           +   + +P
Sbjct: 84  VDPDDPAALIYTSGTTGLPKGCAISWRRTLVT-SNPLSHDLNL------QFPDRTYTCMP 136

Query: 116 FFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV 175
            +H       L   +  G  +    KF+   + + V   + TI+  V  L  +L + P  
Sbjct: 137 LYHGTAAFLGLCYCLGSGGTLCLSRKFSASQFWKDVRDSEATIIQYVGELCRYLLATPPS 196

Query: 176 TPEHLASIREVTC-GAAPATKSLIDKFKQKVQREDITIRQGYGMTE-------------- 220
             +    +R     G  P    + ++F+++       I + Y  TE              
Sbjct: 197 PYDRDHKVRVAYGNGLRP---DIWERFRERFNVP--EIGEFYAATEGVFAFTNHNVGPFT 251

Query: 221 TSPCTLY-----------------------------TRFAIPEAKLGSTGQLVM------ 245
                                               T F +  A +G  G+++       
Sbjct: 252 AGAIGFSGLIRRWFLENQVFLVKMDPETDMPIRDPKTGFCV-RAPVGEPGEMLGRVRFKN 310

Query: 246 ----LGYLKNEEATKETV------DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQ 295
                GYLKNE+AT+  +        + W  TGD+   D DG +Y +DR  +  + K   
Sbjct: 311 RELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDLLRQDADGRWYFLDRLGDTFRWKSEN 370

Query: 296 VA 297
           V+
Sbjct: 371 VS 372

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 232 IPEAKLGS---TGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKEL 288
           +PE  +G     G  +M GY ++EE+    + ++GWL TGD+ Y   DGY YI  R K+L
Sbjct: 406 LPERVVGHICVRGPSLMSGYFRDEESQD-VLAADGWLDTGDLGYL-LDGYLYITGRAKDL 463

Query: 289 IKVKGNQVAP 298
           I + G  + P
Sbjct: 464 IIINGRNIWP 473

Length = 579

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 59.8 bits (145), Expect = 6e-10
 Identities = 68/271 (25%), Positives = 113/271 (41%), Gaps = 46/271 (16%)

Query: 66  YSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH--IYGFN 123
           Y+SGTTG  K V  S+    V L+      I   IPT   S  ++  V   FH  +YG  
Sbjct: 261 YTSGTTGNSKAVVRSNGPHLVGLKYYWRSIIEKDIPTVVFSHSSIGWVS--FHGFLYGSL 318

Query: 124 GILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFL-ASHPAVTPEH--- 179
            + N  +M+    I   K   +     + K+K T    +P  + +L  + P  T      
Sbjct: 319 SLGNTFVMFEGG-IIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKY 377

Query: 180 -LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTL--YTRFAIPEAK 236
            L++++E+ CG     +S+ +  + K++ +     +GYG TE     L  Y    IP   
Sbjct: 378 DLSNLKEIWCGGEVIEESIPEYIENKLKIKSS---RGYGQTEIGITYLYCYGHINIPYNA 434

Query: 237 LG---------------------STGQLVM---------LGYLKNEEATKETVDS-EGWL 265
            G                       G++             + KN+E  K+      G+ 
Sbjct: 435 TGVPSIFIKPSILSEDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYY 494

Query: 266 HTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
           ++GD+ + DE+GY+ IV R+ + IK+ GN+V
Sbjct: 495 NSGDLGFKDENGYYTIVSRSDDQIKISGNKV 525

Length = 647

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 59.5 bits (145), Expect = 9e-10
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 244 VMLGYLKNEEATKET------VDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
           V  GY    EAT ET       D  GWL TGD+ +   DG  Y+  R K+LI ++G
Sbjct: 392 VAAGYWNRPEATAETFGARLATDEGGWLRTGDLGFLH-DGELYVTGRLKDLIIIRG 446

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 65/314 (20%), Positives = 108/314 (34%), Gaps = 66/314 (21%)

Query: 18  LPNFRGTIVVGGEHDKSKNIFG--FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPK 75
           LP  R  +VV              ++  + +  P+    + SP+DL +L Y+ GTTG+PK
Sbjct: 121 LPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSPERDFGERSPDDLYLL-YTGGTTGMPK 179

Query: 76  GVKLSHNNC-AVNLEQCVHPDIVNHIPTSDTSQE----------TVLSVLPFFHIYGFNG 124
           GV     +   V L      D     P  D  +                 P  H  G   
Sbjct: 180 GVMWRQEDIFRVLLGG---RDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWA 236

Query: 125 ILNVVMMYGMHMI-TIPKFTPETYIECVVKYKPTILFVV------PSLLLFLASHPAVTP 177
               +      ++    +F  +     + + K  ++ +V      P     L +  A  P
Sbjct: 237 AFAALFSGQTVVLLPDVRFDADEVWRTIEREKVNVITIVGDAMARP----LLDALEARGP 292

Query: 178 EHLASIREVTCGAAPATKSLIDKFKQKVQR--EDITIRQGYGMTET-----------SPC 224
             L+S+  +  G A  + S+    K+ +     ++ +    G +ET           +  
Sbjct: 293 YDLSSLFAIASGGALFSPSV----KEALLELLPNVVLTDSIGSSETGFGGSGTVAKGAVH 348

Query: 225 TLYTRFAI-PEAKL------------GSTGQL-----VMLGYLKNEEATKET---VDSEG 263
           T   RF I P   +            G  G +     + LGY K+ E T ET   +D   
Sbjct: 349 TGGPRFTIGPRTVVLDEDGNPVEPGSGEIGWIARRGHIPLGYYKDPEKTAETFPTIDGVR 408

Query: 264 WLHTGDVAYYDEDG 277
           +   GD A  + DG
Sbjct: 409 YAIPGDRARVEADG 422

Length = 533

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 68/328 (20%), Positives = 132/328 (40%), Gaps = 60/328 (18%)

Query: 14  IGATLPNFRGTIVVGGEHDKSKNIFG-FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTG 72
           I +  P+ +  ++V    + S++ +  FK+L+     +    K    +   + ++SGTTG
Sbjct: 131 IASECPSLKTKLLVS---EHSRDGWLNFKELLKEASTEHTCVKTKSQEPMAIYFTSGTTG 187

Query: 73  VPKGVKLSHNNCAVNLEQC-------VHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGI 125
            PK  + SH++  + L+            DI+ ++  +   +  + S+        F+  
Sbjct: 188 FPKMAEHSHSSLGLGLKVNGRYWLDLTPSDIMWNMSDTGWIKAAIWSL--------FSPW 239

Query: 126 LNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIRE 185
           +    ++  H+   P+F P+  ++ + KY  T     P++   L     +T     S+R 
Sbjct: 240 IQGACVFVHHL---PRFDPKVILQTLSKYPITTFCSAPTVYRMLVQQD-LTSYKFKSLRH 295

Query: 186 VTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS-PCTLYTRFAI------------ 232
              G  P    +++++K +   +   + +GYG TET   C  +    I            
Sbjct: 296 CVTGGEPLNPEVLEQWKAQTGLD---LYEGYGQTETGLICANFKGMKIKPGSMGKASPPY 352

Query: 233 ------------PEAKLGSTGQLV--------MLGYLKNEEATKETVDSEGWLHTGDVAY 272
                       P    G  G  V           Y+ N E T  T+  + ++ TGD   
Sbjct: 353 DVQIIDDNGNVLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYI-TGDRGI 411

Query: 273 YDEDGYFYIVDRTKELIKVKGNQVAPYK 300
            DEDGYF+ V R  ++I   G ++ P++
Sbjct: 412 MDEDGYFWFVGRADDVINSSGYRIGPFE 439

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 67/294 (22%), Positives = 108/294 (36%), Gaps = 55/294 (18%)

Query: 47  QPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTS 106
           + P    P++ P+DLA + ++SG+TG PKGV ++H   AVN       D+          
Sbjct: 114 ESPAPPPPRVDPDDLAYVIFTSGSTGEPKGVMITHRA-AVNTIL----DVNRRFGVGPAD 168

Query: 107 QETVLSVLPF-FHIYGFNGILNVVMMYGMHMITIP---KFTPETYIECVVKYKPTILFVV 162
           +   LS L F   +Y   G L+     G  ++      +  P+ + E V ++  T+   V
Sbjct: 169 RVLALSALHFDLSVYDIFGALSA----GAALVLPDEARRRDPDHWAELVQRHGVTVWNSV 224

Query: 163 PSLLLFLASHPAVTPEHLASIREVTCGA--APATKSLIDKFKQKVQREDITIRQGYGMTE 220
           P+L+  L ++       L S+R V       P    L  + +         +    G TE
Sbjct: 225 PALMDMLLTYAEDAARLLPSLRLVMLSGDWIPLD--LPRRLRA--LAPGARLVSLGGATE 280

Query: 221 TSP-CTLY--------------------TRFAIPEAKL-----GSTGQL------VMLGY 248
            S     Y                     +F + +           G+L      V LGY
Sbjct: 281 ASIWSIYYPIDDVDPDWRSIPYGKPLPNQKFYVLDEDGRDCPDWVPGELYIGGVGVALGY 340

Query: 249 LKNEEATKET----VDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
             + E T E        E    TGD+  Y  DG    + R    +K++G +V  
Sbjct: 341 WGDPELTAERFITHRTGERLYRTGDLGRYRPDGTIEFLGRADHQVKIRGYRVEL 394

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 63/285 (22%), Positives = 105/285 (36%), Gaps = 61/285 (21%)

Query: 55   KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD-----TSQET 109
            ++ P++LA + Y+SG+TG PKGV +SH +            +VNH+  +      T  + 
Sbjct: 4690 RLHPDNLAYVIYTSGSTGRPKGVAVSHGS------------LVNHLHATGERYELTPDDR 4737

Query: 110  VLSVLPF-FHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLF 168
            VL  + F F          ++    + +     + PE     + +++ T+L   P  L  
Sbjct: 4738 VLQFMSFSFDGSHEGLYHPLINGASVVIRDDSLWDPERLYAEIHEHRVTVLVFPPVYLQQ 4797

Query: 169  LASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS--PCTL 226
            LA H     E   S+R    G     ++  D   + +  + + +  GYG TET+      
Sbjct: 4798 LAEHAERDGE-PPSLRVYCFGGEAVAQASYDLAWRAL--KPVYLFNGYGPTETTVTVLLW 4854

Query: 227  YTRFAIPE-------------------------AKLGSTGQL------VMLGYLKNEEAT 255
              R                                +G  G+L      V  GYL+    T
Sbjct: 4855 KARDGDACGAAYMPIGTPLGNRSGYVLDGQLNPLPVGVAGELYLGGEGVARGYLERPALT 4914

Query: 256  KE-----TVDSEG--WLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
             E        + G     TGD+A Y  DG    + R    +K++G
Sbjct: 4915 AERFVPDPFGAPGGRLYRTGDLARYRADGVIDYLGRVDHQVKIRG 4959

Length = 5163

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 12/114 (10%)

Query: 13  KIGATLPNFRGTIVVGGE-HDKSKNIFGFKQL--VTSQPPDFQLPKI----SPNDLAMLP 65
            I   LP+ +  I       +K  N++ +K+   +    PD QL  I     PN    L 
Sbjct: 97  AIQDQLPHLKAIIQYREPLKEKEPNLYSWKEFMELGRSIPDEQLDAIIESQKPNQCCTLI 156

Query: 66  YSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHI 119
           Y+SGTTG+PKGV LSH+N     +       V H+      QE+V+S LP  HI
Sbjct: 157 YTSGTTGMPKGVMLSHDNITWTAKA-----AVKHMDLRTVGQESVVSYLPLSHI 205

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 56.7 bits (137), Expect = 7e-09
 Identities = 43/152 (28%), Positives = 60/152 (39%), Gaps = 49/152 (32%)

Query: 182 SIREVTCGAAPATKSLIDKFKQKVQR-----EDITIRQGYGMTETS-------------- 222
            IR +  G AP +           QR         I QGYG+TET               
Sbjct: 421 RIRFMLSGGAPLSGD--------TQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVG 472

Query: 223 ------PCT------------LYTRFAIPEAKLGSTGQLVMLGYLKNEEATKET--VDSE 262
                 PC             L +   +P  ++   G  V LGY KN+E T E   VD  
Sbjct: 473 RVGPPLPCCYVKLVSWEEGGYLISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDER 532

Query: 263 G--WLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
           G  W +TGD+  +  DG   I+DR K+++K++
Sbjct: 533 GMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQ 564

Length = 696

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 56.5 bits (137), Expect = 8e-09
 Identities = 32/90 (35%), Positives = 39/90 (43%), Gaps = 18/90 (20%)

Query: 46  SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV-----HPDIVNHI 100
           S      LP       A L Y+SG+T  P GV +SH N   N EQ +         V   
Sbjct: 152 SDARPRDLPST-----AYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGDTGGV--- 203

Query: 101 PTSDTSQETVLSVLPFFHIYGFNGILNVVM 130
           P  DT   TV+S LPF+H  G   +L V  
Sbjct: 204 PPPDT---TVVSWLPFYHDMGL--VLGVCA 228

Length = 578

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 61/294 (20%), Positives = 95/294 (32%), Gaps = 69/294 (23%)

Query: 54  PKIS--PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTS----- 106
           P     P +LA + Y+SG+TG PKG    H              + N +     +     
Sbjct: 648 PGTELNPENLAYVIYTSGSTGKPKGAGNRHRA------------LSNRLCWMQQAYGLGV 695

Query: 107 QETVLSVLPF---FHIYGFNGILNVVMMYGMHMITIPK---FTPETYIECVVKYKPTILF 160
            +TVL   PF     ++ F   L    M G  ++         P   +E + +     L 
Sbjct: 696 GDTVLQKTPFSFDVSVWEFFWPL----MSGARLVVAAPGDHRDPAKLVELINREGVDTLH 751

Query: 161 VVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTE 220
            VPS+L        V      S+R + C          ++   K+ +  +     YG TE
Sbjct: 752 FVPSMLQAFLQDEDV--ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLY--NLYGPTE 807

Query: 221 TSPCTLY-------------------TRFAIPEAKL-----GSTGQLVMLG------YLK 250
            +    +                       I +A L     G  G+L + G      Y  
Sbjct: 808 AAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPVPVGVLGELYLAGRGLARGYHG 867

Query: 251 NEEATKET------VDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
               T E       V  E    TGD+A Y  DG      R    +K++G ++  
Sbjct: 868 RPGLTAERFVPSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIEL 921

Length = 5163

>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP) including hsFATP2, hsFATP5, and hsFATP6, and similar proteins

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 84/374 (22%), Positives = 138/374 (36%), Gaps = 92/374 (24%)

Query: 5   PQLLEVGTKIGATLPNFRGTIV---VGGEHDKSKNIFGFKQLVTSQPPDFQLPK-----I 56
           P+LLE   +I   LP  R   V           + +      V     D  +P      +
Sbjct: 84  PELLEAVEEI---LPALRAMGVRVFYLSHTSPPEGVISLLAKV-DAASDEPVPASLRSGV 139

Query: 57  SPNDLAMLPYSSGTTGVPKGVKLSHNN---CAVNLEQCVHPDIVNHIPTSDTSQETVLSV 113
           S    A+  Y+SGTTG+PK  ++SH     C+  L  C             T+ + V + 
Sbjct: 140 SIRSTALYIYTSGTTGLPKAARISHLRVLQCSGMLSLC-----------GVTADDVVYTT 188

Query: 114 LPFFHIYGFNGILNVV--MMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLAS 171
           LP +H  G   +L +V  +  G  ++  PKF+   + +   KY  T+   +  LL +L +
Sbjct: 189 LPLYHSSGA--LLGIVGCIGLGATLVLKPKFSASQFWDDCRKYNVTVFQYIGELLRYLCN 246

Query: 172 HPAVTPEHLASIR-EVTCGAAPATKSLIDKFKQKVQR-EDITIRQGYGMTETSPCTL-YT 228
            P    +    +R  +  G  P      D +++ ++R   I + + Y  TE +   + YT
Sbjct: 247 QPQSDNDRDHKVRLAIGNGLRP------DVWREFLRRFGPIHVWETYASTEGNIGFINYT 300

Query: 229 R------------------------------------FAIPEAKLGSTGQLV-------- 244
                                                F IP    G  G L+        
Sbjct: 301 GRVGAVGRASCLYKLLSPFELIKYDVEKDEPVRDAQGFCIP-VGKGEPGLLISKITSQSP 359

Query: 245 MLGYLKNEEATKET----VDSEG--WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
            LGY    E T++     V  +G  + +TGD+   D   + Y  DRT +  + KG  VA 
Sbjct: 360 FLGYAGPRELTEKKLLRDVFKKGDVYFNTGDLLVQDRQNFLYFHDRTGDTFRWKGENVAT 419

Query: 299 YK--KLAGGVKFLE 310
            +   +   V F++
Sbjct: 420 TEVADILTMVDFIQ 433

Fatty acid transport proteins (FATP) of this family transport long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes hsFATP2, hsFATP5, and hsFATP6, and similar proteins. Each FATP has unique patterns of tissue distribution. These FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. The hsFATP proteins exist in two splice variants; the b variant, lacking exon 3, has no acyl-CoA synthetase activity. FATPs are key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 535

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 63/287 (21%), Positives = 102/287 (35%), Gaps = 61/287 (21%)

Query: 53   LPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLS 112
              +++  +LA + Y+SG+TG+PKGV +SH              +V H   +    E   +
Sbjct: 2140 AVQLAGENLAYVIYTSGSTGLPKGVAVSHG------------ALVAHCQAAGERYELSPA 2187

Query: 113  --VLPF--FHIYGFNGILNVVMMYGMHMITIPK--FTPETYIECVVKYKPTILFVVPSLL 166
               L F  F   G +      ++ G  ++      + PE   + + ++  TIL   P  L
Sbjct: 2188 DCELQFMSFSFDGAHEQWFHPLLNGARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYL 2247

Query: 167  LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS---- 222
              LA H         ++R    G      + +    + ++   +    GYG TE      
Sbjct: 2248 QQLAEHAERD-GRPPAVRVYCFGGEAVPAASLRLAWEALRPVYLF--NGYGPTEAVVTPL 2304

Query: 223  --------PCTLYT----------RFAIPEAKL-----GSTGQL------VMLGYLKNEE 253
                    PC              R  I +A L     G  G+L      +  GYL    
Sbjct: 2305 LWKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLLAPGMAGELYLGGEGLARGYLNRPG 2364

Query: 254  ATKETV-----DSEGWL--HTGDVAYYDEDGYFYIVDRTKELIKVKG 293
             T E        + G     TGD+A Y  DG    + R    +K++G
Sbjct: 2365 LTAERFVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRG 2411

Length = 5163

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 11/77 (14%)

Query: 232 IPEAKLGSTGQL--------VMLGYLKNEEATKET-VDSEGWLHTGDVAYYDEDGYFYIV 282
            P    G  G+L        +  GYL NEE    + VD  GW  TGD+AY DEDGYF+ V
Sbjct: 282 TPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSFVD--GWYLTGDLAYRDEDGYFWFV 339

Query: 283 DRTKELIKVKGNQVAPY 299
            R  ++IK  G+ V P+
Sbjct: 340 GRADDVIKTAGHLVGPF 356

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 47/163 (28%), Positives = 70/163 (42%), Gaps = 45/163 (27%)

Query: 183 IREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET-SPCTL--------------- 226
           +R +  G AP +   I++F +      +   QGYG+TET  P TL               
Sbjct: 385 LRLLISGGAPLSTE-IEEFLRVTSCAFVV--QGYGLTETLGPTTLGFPDEMCMLGTVGAP 441

Query: 227 --YTRFAIPEAK------LGST--------GQLVMLGYLKNEEATKETVDSEGWLHTGDV 270
             Y    + E        LG          G+ +  GY KN E T+E +  +GW HTGD+
Sbjct: 442 AVYNELRLEEVPEMGYDPLGEPPRGEICVRGKCLFSGYYKNPELTEEVM-KDGWFHTGDI 500

Query: 271 AYYDEDGYFYIVDRTKELIKV-KGNQVAPYKKLAGGVKFLETI 312
                +G   I+DR K LIK+ +G  VA        +++LE +
Sbjct: 501 GEILPNGVLKIIDRKKNLIKLSQGEYVA--------LEYLENV 535

Length = 660

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 20/130 (15%)

Query: 2   CNIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKN--------IFGFKQLVT---SQPPD 50
             +PQ L       + +P+ R  +VVGG  +   +        I  + +L+    S P  
Sbjct: 155 FCVPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQP 214

Query: 51  FQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV 110
           F+ PK  P D+A + Y+SGTTG PKGV L+H N   N        +      SD      
Sbjct: 215 FRPPK--PEDVATICYTSGTTGTPKGVVLTHGNLIAN---VAGSSLSTKFYPSDVH---- 265

Query: 111 LSVLPFFHIY 120
           +S LP  HIY
Sbjct: 266 ISYLPLAHIY 275

Length = 651

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 39/187 (20%), Positives = 68/187 (36%), Gaps = 23/187 (12%)

Query: 43  LVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIP- 101
           L+           + P++LA + Y+SG+TG PKGV +SH              + N++  
Sbjct: 640 LLCGYSGHNPEVALDPDNLAYVIYTSGSTGQPKGVAISHGA------------LANYVCV 687

Query: 102 TSDTSQETVLSVLPFFHIYGFNG---ILNVVMMYGMHMITIPK---FTPETYIECVVKYK 155
            ++  Q      +     + F+     L   +  G  +  +P       E +   +    
Sbjct: 688 IAERLQLAADDSMLMVSTFAFDLGVTELFGALASGATLHLLPPDCARDAEAFAALMADQG 747

Query: 156 PTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQG 215
            T+L +VPS L  L     V        R + CG       L+ + +         +   
Sbjct: 748 VTVLKIVPSHLQALLQASRVAL--PRPQRALVCGGEALQVDLLARVRAL--GPGARLINH 803

Query: 216 YGMTETS 222
           YG TET+
Sbjct: 804 YGPTETT 810

Length = 3956

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 35/126 (27%)

Query: 50  DFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQC--------VHPDIVNHIP 101
            +Q P + P+D+A L Y+SG+T +PKGV++SH N   N EQ         ++PD      
Sbjct: 157 AWQEPALQPDDIAFLQYTSGSTALPKGVQVSHGNLVAN-EQLIRHGFGIDLNPD------ 209

Query: 102 TSDTSQETVLSVLPFFHIYG---------FNGILNVVMMYGMHMITIPKFTPETYIECVV 152
                 + ++S LP +H  G         F+G+   V+M   + +      P  ++E + 
Sbjct: 210 ------DVIVSWLPLYHDMGLIGGLLQPIFSGV-PCVLMSPAYFLE----RPLRWLEAIS 258

Query: 153 KYKPTI 158
           +Y  TI
Sbjct: 259 EYGGTI 264

Length = 4334

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 55/210 (26%), Positives = 87/210 (41%), Gaps = 36/210 (17%)

Query: 111 LSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLA 170
             VLP +H+ G    +   +  G  +I +P    ++  E         L +VP+ L  L 
Sbjct: 164 FCVLPLYHVSGLMQFMRSFLTGGKLVI-LPYKRLKSGQELPPNPSDFFLSLVPTQLQRLL 222

Query: 171 SHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP--CTLY- 227
               + P+ LA  R +  G APA  SL+    ++ ++  + +   YGMTET+    TL  
Sbjct: 223 Q---LRPQWLAQFRTILLGGAPAWPSLL----EQARQLQLRLAPTYGMTETASQIATLKP 275

Query: 228 TRF---------AIPEAKL----GSTGQLVM------LGYLKNEEATKETVDSEGWLHTG 268
             F          +P A++      TG + +      LGY          +DS+G   T 
Sbjct: 276 DDFLAGNNSSGQVLPHAQITIPANQTGNITIQAQSLALGYYPQ------ILDSQGIFETD 329

Query: 269 DVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           D+ Y D  GY +I+ R  + I   G  V P
Sbjct: 330 DLGYLDAQGYLHILGRNSQKIITGGENVYP 359

Length = 452

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 51.3 bits (122), Expect = 4e-07
 Identities = 62/303 (20%), Positives = 110/303 (36%), Gaps = 44/303 (14%)

Query: 40  FKQLVTSQPPDFQ-LPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVN 98
                     +     ++       + Y++GTTG+PKGV  SH    ++        +V+
Sbjct: 133 GYLAYEEALGEEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAA---SLVD 189

Query: 99  HIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTI 158
               S   ++ VL V+P FH+  +       ++    ++  P+  P + +E       T 
Sbjct: 190 GTALS--EKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTF 247

Query: 159 LFVVPSLLLFLA-SHPAVTPEHLASIREVTCGAAPATKSL----IDKFKQKV-------- 205
              VP++ L LA    +         R V  G+A     +        + +         
Sbjct: 248 TAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETS 307

Query: 206 ----------------QREDITIRQGYGMT---ETSPCTLYTRFAIPEAK-----LGSTG 241
                           + E +T++   G+                +P+       +   G
Sbjct: 308 PVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKG 367

Query: 242 QLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPYKK 301
             +  GY  NEEAT+  +  +G+  TGD+A +DE+GY  I DR K+LIK  G +      
Sbjct: 368 PWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKS-GGEWISSVD 426

Query: 302 LAG 304
           L  
Sbjct: 427 LEN 429

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|213273 cd05905, Dip2, Disco-interacting protein 2 (Dip2)

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 59/254 (23%), Positives = 85/254 (33%), Gaps = 61/254 (24%)

Query: 14  IGATLPNFRGTIVVG-----------------GEHDKSKNIFGFKQLVT-----SQPPDF 51
           +GA L + +    V                  GE  K K        VT      +P   
Sbjct: 77  VGALLGSIKHYCGVAVALTSEACLKGLRSKTTGEILKFKGWPRLVWFVTEIKTLKKPIKD 136

Query: 52  QLPKISP--NDLAMLPYSSGTTGVPKGVKLSH----NNCAVNLEQCVHPDIVNHIPTSDT 105
             P + P   D A + Y +   G   GV ++H     +C    + C +           T
Sbjct: 137 WNPHLPPANLDTAYIEYKTSKEGSVMGVTVTHQALLTHCQALKQACQY-----------T 185

Query: 106 SQETVLSVLPFFHIYGF-NGILNVVMMYGMHMITIP----KFTPETYIECVVKYKPTILF 160
              T+++VL F    GF +G L  VM  GMH I IP    K  P  + + + KYK     
Sbjct: 186 EGRTIVNVLDFKKGVGFWHGCLTSVMN-GMHTILIPPALMKNNPLLWFQIISKYKIKDTL 244

Query: 161 VVPSLL--LFLASHPAVTPEHLASIRE--VTCGAAPATKSLIDKFKQKVQREDITIRQGY 216
           V    L     A        +L+ +R   V  GA P + +    F    Q + +      
Sbjct: 245 VKSRDLHWALNAHRDQKDI-NLSCLRMLIVADGARPWSLASCQAFLNVFQSKGL------ 297

Query: 217 GMTETSPCTLYTRF 230
                SPC   T  
Sbjct: 298 -----SPCASSTEA 306

Dip2 proteins show sequence similarity to other members of the adenylate forming enzyme family, including insect luciferase, acetyl CoA ligases and the adenylation domain of nonribosomal peptide synthetases (NRPS). However, its function may have diverged from other members of the superfamily. In mouse embryo, Dip2 homolog A plays an important role in the development of both vertebrate and invertebrate nervous systems. Dip2A appears to regulate cell growth and the arrangement of cells in organs. Biochemically, Dip2A functions as a receptor of FSTL1, an extracellular glycoprotein, and may play a role as a cardiovascular protective agent. Length = 556

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 49.9 bits (120), Expect = 8e-07
 Identities = 63/282 (22%), Positives = 105/282 (37%), Gaps = 63/282 (22%)

Query: 58  PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVH--PDIVNHIPTSDTSQETVLSVLP 115
           P+DLA + Y+SG+TG PKGV++SH    VN    +   P +         + + +L+V  
Sbjct: 92  PDDLAYVIYTSGSTGKPKGVEVSHRA-LVNFLLSMARRPGL--------GASDRLLAVTT 142

Query: 116 F-FHIYGFNGILNVVMMYGMHMITIPKFT---PETYIECVVKYKPTILFVVPSLL-LFLA 170
             F I      L + ++ G  ++     T   PE     +   + TI+   P+   + LA
Sbjct: 143 ISFDISVLE--LLLPLLSGATVVIASAETVRDPERLARLIADERITIMQATPATWRMLLA 200

Query: 171 SHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET--------- 221
           +          S+    CG     + L ++           +   YG TET         
Sbjct: 201 AG----WRGRESLT-ALCGGEALPRDLAERLLSTGAE----LWNMYGPTETTIWSTCARV 251

Query: 222 ----SPCTL-----YTRFAIPEAKL-----GSTGQL------VMLGYLKNEEATKE---- 257
                P T+      T+  + +  L     G  G+L      V  GYL   E T E    
Sbjct: 252 TAADGPVTIGRPIANTQVYVLDEDLQPVPPGVPGELYIGGDGVARGYLGRPELTAERFVP 311

Query: 258 ---TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
                       TGD+  +  DG    + R  + +K++G ++
Sbjct: 312 DPFDDPGGRLYRTGDLVRWRPDGRLEYLGRADDQVKIRGFRI 353

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 49.9 bits (120), Expect = 9e-07
 Identities = 59/282 (20%), Positives = 102/282 (36%), Gaps = 68/282 (24%)

Query: 55  KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVL 114
            ++  D A   Y+SGTTG+PK   +SH      +                T  + +   L
Sbjct: 195 GVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGG-------LLRLTPDDVLYCCL 247

Query: 115 PFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPA 174
           P +H  G     + V+  G  +    KF+   + + V +Y+ T    +  L  +L + P 
Sbjct: 248 PLYHNTGGTVAWSSVLAAGATLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPP 307

Query: 175 VTPEHLASIREVTCGAA--PATKSLIDKFKQK--VQREDITIRQGYGMTET--------- 221
              +    +R +  G    P    + D+F+Q+  + R    I + Y  +E          
Sbjct: 308 KPTDRDHRLR-LMIGNGLRP---DIWDEFQQRFGIPR----ILEFYAASEGNVGFINVFN 359

Query: 222 -------SPCTLYTRFAI---------P---------EAKLGSTGQLV-ML-------GY 248
                   P  L   +AI         P         + K G  G L+  +       GY
Sbjct: 360 FDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY 419

Query: 249 LKNEEATKETV------DSEGWLHTGDVAYYDEDGYFYIVDR 284
             + EA+++ +        + W +TGD+   D  G+   VDR
Sbjct: 420 T-DPEASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDR 460

Length = 600

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 13/112 (11%)

Query: 59  NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
           +DLA++ Y+SGTTG PKGV  +H +    +        +N +       ET  S LP  H
Sbjct: 264 DDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDR--LNDLIGPPEEDETYCSYLPLAH 321

Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVK-------YKPTILFVVP 163
           I  F G+ N+ +  G     I   +P T  +   +       ++P  L  VP
Sbjct: 322 IMEF-GVTNIFLARGAL---IGFGSPRTLTDTFARPHGDLTEFRPVFLIGVP 369

Length = 700

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 61/254 (24%), Positives = 96/254 (37%), Gaps = 36/254 (14%)

Query: 60  DLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV------LSV 113
           D+A++  +SGTTG PKG  L+    A  L             ++D + + +      L  
Sbjct: 36  DVALVVATSGTTGTPKGAMLT----AAAL-----------TASADATHDRLGGPGQWLLA 80

Query: 114 LPFFHIYGFNGIL-NVVMMYGMHMITIPK-FTPETYIECVVKYKPTILFV--VPSLLLFL 169
           LP  HI G   ++ +V+       + +   F P      V +      +   VP  L   
Sbjct: 81  LPAHHIAGLQVLVRSVIAGSEPVELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKA 140

Query: 170 ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTR 229
              PA T   LA +  V  G  PA   ++D          I + + YGM+ETS   +Y  
Sbjct: 141 LDDPAAT-AALAELDAVLVGGGPAPAPVLDAAAAA----GINVVRTYGMSETSGGCVYDG 195

Query: 230 FAIPEAKLGSTGQLVMLGYLKNEEATKETVD-----SEGWLHTGDVAYYDEDGYFYIVDR 284
             +   ++      + LG     +  +  VD       GW  T D+   D DG   ++ R
Sbjct: 196 VPLDGVRVRVEDGRIALGGPTLAKGYRNPVDPDPFAEPGWFRTDDLGALD-DGVLTVLGR 254

Query: 285 TKELIKVKGNQVAP 298
             + I   G  V P
Sbjct: 255 ADDAISTGGLTVLP 268

Length = 358

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 6/78 (7%)

Query: 49  PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQE 108
            D  LP+ +P+D+A L YSSG+T  P+GV ++H     NL    H  +   +   D    
Sbjct: 166 ADVALPRPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL--KVRPGDRC-- 221

Query: 109 TVLSVLPFFHIYGFNGIL 126
             +S LPF+H  G  G L
Sbjct: 222 --VSWLPFYHDMGLVGFL 237

Length = 579

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 72/321 (22%), Positives = 111/321 (34%), Gaps = 97/321 (30%)

Query: 43  LVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVN---- 98
           L        QL +  P+  A + ++SG+TG PKGV +                IVN    
Sbjct: 584 LAPQGAAPLQLSQ--PHHTAYIIFTSGSTGRPKGVMVGQTA------------IVNRLLW 629

Query: 99  ---HIPTSDTSQETVL---------SVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPE- 145
              H P   T+ + VL         SV  FF             + G  ++      PE 
Sbjct: 630 MQNHYPL--TADDVVLQKTPCSFDVSVWEFF----------WPFIAGAKLVMAE---PEA 674

Query: 146 ----TYIECVV-KYKPTILFVVPSLL-LFLAS-HPAVTPEHLASIREVTCGAAPATKSLI 198
                 ++    +Y  T    VPS+L  F+AS  P    +  AS+R+V C        L 
Sbjct: 675 HRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLC 734

Query: 199 DKFKQKVQREDITIRQGYGMTE---------TSPCTLY---------------TRFAIPE 234
            +++Q        +   YG TE              L                T   I +
Sbjct: 735 REWQQLTGAP---LHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILD 791

Query: 235 AKL-----GSTGQL----VML--GYLKNEEATKET------VDSEGWLHTGDVAYYDEDG 277
           A++     G  G L    + L  GYL   + T            E    TGDVA + +DG
Sbjct: 792 ARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDDG 851

Query: 278 YFYIVDRTKELIKVKGNQVAP 298
               + R+ + +K++G ++  
Sbjct: 852 AVEYLGRSDDQLKIRGQRIEL 872

Length = 1296

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 15/100 (15%)

Query: 51  FQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV 110
           +  P+ + + +A L Y+SG+T +P GV+++H N   N+ Q     +++ +   +  +   
Sbjct: 172 WVPPEANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQ-----VIDALEGQEGDRG-- 224

Query: 111 LSVLPFFHIYGFNGILNVVMMYGM--HMITIPKFTPETYI 148
           +S LPFFH  G    L  V++  +  H IT    +P  ++
Sbjct: 225 VSWLPFFHDMG----LITVLLPALLGHYITF--MSPAAFV 258

Length = 631

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 56/265 (21%), Positives = 103/265 (38%), Gaps = 50/265 (18%)

Query: 66  YSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGI 125
           ++SG+TG PK    +  +   +   C   D   H+      +++VL      H     G 
Sbjct: 150 FTSGSTGKPKAFLRAQQSWLHSF-DCNVHDF--HM----KREDSVLIAGTLVHSLFLYGA 202

Query: 126 LNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIRE 185
           ++ + + G  +  + KF P   ++ +     ++++ VP++L  L     V  E+   I  
Sbjct: 203 ISTLYV-GQTVHLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENRV-IENKMKI-- 258

Query: 186 VTCGA---APATKSLIDKFKQKVQREDITIRQGYGMTETS-------------------P 223
           ++ GA   A A + + + F    +  +      YG +E S                   P
Sbjct: 259 ISSGAKWEAEAKEKIKNIFPY-AKLYEF-----YGASELSFVTALVDEESERRPNSVGRP 312

Query: 224 CTLYT----RFAIPEAKLGSTGQLVM------LGYLKNEEATKETVDSEGWLHTGDVAYY 273
                      A  E + G  G + +      +GY          ++++GW+   DV Y 
Sbjct: 313 FHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGY-IIGGVLARELNADGWMTVRDVGYE 371

Query: 274 DEDGYFYIVDRTKELIKVKGNQVAP 298
           DE+G+ YIV R K +I   G  + P
Sbjct: 372 DEEGFIYIVGREKNMILFGGINIFP 396

Length = 487

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 245 MLGYLKNEEATKETV--DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
           +L    ++E  K+       G+  TGD  Y DEDGY +++ RT ++I V G
Sbjct: 441 LLTLWGDDERFKKLYLNKFPGYYDTGDSGYKDEDGYLFVMGRTDDVINVAG 491

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 70/278 (25%), Positives = 102/278 (36%), Gaps = 49/278 (17%)

Query: 54  PKISPNDLAMLPYSSGTTGVPKGV-KLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLS 112
           P ++     +L  +SGTTG PKGV +      AV     V   I++       S+ +V  
Sbjct: 170 PAVAAPGRIVL-LTSGTTGKPKGVPRAPQLRSAVG----VWVTILDRTRLRTGSRISV-- 222

Query: 113 VLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASH 172
            +P FH  G  G+L + +  G  ++T   F  E  +     ++      VP +L  +   
Sbjct: 223 AMPMFHGLGL-GMLMLTIALGGTVLTHRHFDAEAALAQASLHRADAFTAVPVVLARILEL 281

Query: 173 P----AVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS------ 222
           P    A  P  L  +R V         +L  +F       DI +  GYG TE        
Sbjct: 282 PPRVRARNP--LPQLRVVMSSGDRLDPTLGQRFMDTYG--DI-LYNGYGSTEVGIGALAT 336

Query: 223 ------------------PCTLYTRFAIPEAKLGSTGQLVMLGYLKNEEAT----KETVD 260
                             P  +  R   P      TG++ + G L     T    K  VD
Sbjct: 337 PADLRDAPETVGKPVAGCPVRILDRNNRPVGPR-VTGRIFVGGELAGTRYTDGGGKAVVD 395

Query: 261 SEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
             G   TGD+ Y D  G  +IV R  ++I   G  V P
Sbjct: 396 --GMTSTGDMGYLDNAGRLFIVGREDDMIISGGENVYP 431

Length = 516

>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 32/179 (17%)

Query: 54   PKISPNDLAMLPYSSGTTGVPKGVKLSH----NNCAVNLEQC---VHPDIVNHIPTS-DT 105
             ++   +LA + Y+SG+TG PKGV + H    N+     E      +  ++  +  S D 
Sbjct: 3232 TRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAYELDANDRVLLFMSFSFDG 3291

Query: 106  SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK--FTPETYIECVVKYKPTILFVVP 163
            +QE  L  L                + G  ++      + PE   + +  ++ +I    P
Sbjct: 3292 AQERFLWTL----------------ICGGCLVVRDNDLWDPEELWQAIHAHRISIACFPP 3335

Query: 164  SLL-LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET 221
            + L  F            AS+     G      +  ++ K+K++   +T   GYG TE 
Sbjct: 3336 AYLQQFAEDA---GGADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLT--NGYGPTEA 3389

Length = 3956

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 19/35 (54%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 264 WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           W+H GD A  DEDGY+YI+ R+ + IKV G +V P
Sbjct: 337 WVH-GDWALVDEDGYWYILGRSDDTIKVAGKRVGP 370

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 20/32 (62%), Positives = 27/32 (84%), Gaps = 1/32 (3%)

Query: 295 QVAPYKKLAGGVKFLETIPRNPAGKVLRNELK 326
           QVAPYKK+   V F+++IP++PAGK+LR ELK
Sbjct: 519 QVAPYKKVRK-VVFVQSIPKSPAGKILRRELK 549

Length = 560

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 66/282 (23%), Positives = 96/282 (34%), Gaps = 70/282 (24%)

Query: 58  PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSV---- 113
           P+DLA + Y+SG+TG PKGV + H N A  L Q             + +   VL+     
Sbjct: 104 PDDLAYVIYTSGSTGRPKGVAIEHRN-AAALLQWAA----AVFSAEELAG--VLAATSIC 156

Query: 114 --LPFFHIYGFNGILNVVMMYG--MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFL 169
             L  F I+       V +  G  + +       P+   +  V    T++  VPS    L
Sbjct: 157 FDLSVFEIF-------VPLSTGGRVVLADNALALPDLPAKAEV----TLINTVPSAAREL 205

Query: 170 ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET---SPCTL 226
             H A+      S+R V     P  + L+ +     Q E   +   YG +E    S    
Sbjct: 206 LRHDALPS----SVRTVNLAGEPLPQELVQRLYALPQVE--RVYNLYGPSEDTTYSTYAE 259

Query: 227 YTRFAIPEAKLGS---------------------TGQL------VMLGYLKNEEATKE-- 257
               A     +G                       G+L      V  GYL   E T E  
Sbjct: 260 VEPGASRTPSIGRPLAGTQAYVLDAHLQPVPVGVPGELYIGGAGVARGYLGRPELTAERF 319

Query: 258 ------TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
                     E    TGD+     DG    + R  + +KV+G
Sbjct: 320 LPNPFAGSPGERLYRTGDLVRRRADGQLEYLGRIDDQVKVRG 361

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 20/36 (55%), Positives = 28/36 (77%), Gaps = 2/36 (5%)

Query: 48  PPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN 83
           P D  LP  SPND+A++ Y+SG+TG+PKGV ++H N
Sbjct: 241 PVDPDLP--SPNDIAVIMYTSGSTGLPKGVMMTHGN 274

Length = 696

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 43.8 bits (103), Expect = 8e-05
 Identities = 65/268 (24%), Positives = 107/268 (39%), Gaps = 35/268 (13%)

Query: 62  AMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD-TSQETVLSVLPFFHIY 120
           A++ YSSGTTG PKG++       V  +    P +       D +  +   S  P +H  
Sbjct: 151 AVMLYSSGTTGFPKGIQPDLPGRDV--DAPGDPIVAIARAFYDISESDIYYSSAPIYHAA 208

Query: 121 GFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPA--VTPE 178
                 ++V   G  ++   +F  +  +  V +Y+ T+  +VP++ + L    A   T  
Sbjct: 209 PLRWC-SMVHALGGTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRY 267

Query: 179 HLASIREVTCGAAP----ATKSLIDKFKQKVQREDITIRQGYGMTET-SPCTLYTRFAIP 233
            ++S+R V   AAP       ++ID     V  E  +  + +GMT   SP  L    ++ 
Sbjct: 268 DVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVY-EYYSSTEAHGMTFIDSPDWLAHPGSVG 326

Query: 234 EAKLGS------------TGQL---------VMLGYLKNEEATKETVDSEG--WLHTGDV 270
            + LG              G++         +   YL + E T          W   GD+
Sbjct: 327 RSVLGDLHICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDL 386

Query: 271 AYYDEDGYFYIVDRTKELIKVKGNQVAP 298
              DEDGY Y+ DR   +I   G  + P
Sbjct: 387 GSVDEDGYLYLADRKSFMIISGGVNIYP 414

Length = 501

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 239 STGQLVMLGYLKNEEATKETV---DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQ 295
           ++G  +  GY +N EA+ +T    D   WL TGD+ +   DG  ++  R K+++ V+G+ 
Sbjct: 402 ASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLGFL-RDGELFVTGRLKDMLIVRGHN 460

Query: 296 VAP 298
           + P
Sbjct: 461 LYP 463

Length = 4334

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 54/275 (19%), Positives = 87/275 (31%), Gaps = 54/275 (19%)

Query: 58   PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF 117
            P +LA + Y+SG+TG PKGV + H+  A++   C                + VL     F
Sbjct: 3195 PENLAYVIYTSGSTGKPKGVGIRHS--ALSNHLCWMQQAY-----GLGVGDRVLQFTT-F 3246

Query: 118  HIYGFNGILNVVMMYGMHMI---TIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPA 174
                F   L   +M G  ++         P   +E +      +L   PS+L        
Sbjct: 3247 SFDVFVEELFWPLMSGARVVLAGPEDWRDPALLVELINSEGVDVLHAYPSMLQAFLEEED 3306

Query: 175  VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPE 234
                   S++ + CG       L  +         + +   YG TE +    + +     
Sbjct: 3307 --AHRCTSLKRIVCGGEALPADLQQQVFAG-----LPLYNLYGPTEATITVTHWQCVEEG 3359

Query: 235  ------------------------------AKLGSTGQLVMLGYLKNEEATKET------ 258
                                           +L   G+ +  GY      T E       
Sbjct: 3360 KDAVPIGRPIANRACYILDGSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPF 3419

Query: 259  VDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
            V  E    TGD+A Y  DG    + R    +K++G
Sbjct: 3420 VPGERLYRTGDLARYRADGVIEYIGRVDHQVKIRG 3454

Length = 5163

>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase, subunit 1

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 42  QLVTSQ-PPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN 83
           Q  TS  P  F    +  +D   + Y+SG+TG PKGV++SH+N
Sbjct: 124 QAETSGGPVSFDHA-VKGDDNYYIIYTSGSTGNPKGVQISHDN 165

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 502

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 35/126 (27%)

Query: 200 KFKQKVQRE-----DITIRQGYGMTET---------------------SPCTLY------ 227
           K   K+  E     ++   QGYG+TET                     SP T Y      
Sbjct: 472 KLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWE 531

Query: 228 ---TRFAIPEAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDR 284
                  +P+ +L      +  GY   +E TK     +G+  TGD+   +++G    +DR
Sbjct: 532 TYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDR 591

Query: 285 TKELIK 290
           +K L+K
Sbjct: 592 SKGLVK 597

Length = 746

>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)

Query: 31  HDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQ 90
                +I  F  +  ++  ++++    P+ +  + Y+SGT+G PKGV LS+     NL  
Sbjct: 276 KKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPKGVMLSNK----NLYN 331

Query: 91  CVHPDIVNHIPTSDTSQETVLSVLPFFHIY 120
            V P +  H      + +T LS LP  HIY
Sbjct: 332 TVVP-LCKHSIFKKYNPKTHLSYLPISHIY 360

Length = 746

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 68/301 (22%), Positives = 116/301 (38%), Gaps = 59/301 (19%)

Query: 38  FGFKQLVTSQPPDFQLPKISPND-LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDI 96
                 +     DF     SP D +A    S G+TG PK +  +HN+   ++ + V  +I
Sbjct: 161 HSLDDAINHPAEDF-TATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSV--EI 217

Query: 97  VNHIPTSDTSQETVLSVLPFFHIYGFN--GILNVVMMYGMHMITIPKFTPETYIECVVKY 154
                   T Q   L  LP  H Y  +  G L V +  G  ++  P  +       + K+
Sbjct: 218 CGF-----TPQTRYLCALPAAHNYPMSSPGALGVFLAGGT-VVLAPDPSATLCFPLIEKH 271

Query: 155 KPTILFVVPS-LLLFL-ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQ----KVQRE 208
           +  +  +VP  + L+L A     +   LAS++ +  G A  +++L  +       ++Q  
Sbjct: 272 QVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLSETLARRIPAELGCQLQ-- 329

Query: 209 DITIRQGYGMTETSPCTLYTRFAIPEAKL--------------------------GSTGQ 242
                Q +GM E      YTR    + ++                          G  G+
Sbjct: 330 -----QVFGMAEGLVN--YTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEVGR 382

Query: 243 LV------MLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
           L+        GY K+ +      D+ G+  +GD+   D DGY  +V R K+ I   G ++
Sbjct: 383 LMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKI 442

Query: 297 A 297
           A
Sbjct: 443 A 443

Length = 536

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)

Query: 240 TGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
            G  +M GYL      +  +D + W  TGD+ Y  + G   +  R KELI V G  + P
Sbjct: 378 RGASMMSGYLG-----QAPIDPDDWFPTGDLGYLVDGG-LVVCGRAKELITVAGRNIFP 430

Length = 525

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 49   PDFQLPKIS-PNDLAMLPYSSGTTGVPKGVKLSHNNCA 85
             D  LP +S P   A L Y+SG+TG PKGV +SH   A
Sbjct: 2322 SDAPLPFLSLPQHQAYLIYTSGSTGKPKGVVVSHGEIA 2359

Length = 4334

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 74/326 (22%), Positives = 118/326 (36%), Gaps = 87/326 (26%)

Query: 37  IFGFKQLVTSQPPDFQLPKISP---NDLAMLPYSSGTTGVPKGVKLSHNN-----CAVNL 88
           IF     + +Q    + P        D     Y+SGTTG+PK   + H+           
Sbjct: 80  IFNLLDPLLTQSST-EPPSQDDVNFRDKLFYIYTSGTTGLPKAAVIVHSRYYRIAAGAYY 138

Query: 89  EQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNV--VMMYGMHMITIPKFTPET 146
              + P+ V +              LP +H  G  GI+ V   +++G  ++   KF+   
Sbjct: 139 AFGMRPEDVVYDC------------LPLYHSAG--GIMGVGQALLHGSTVVIRKKFSASN 184

Query: 147 YIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIR-EVTCGAAPATKSLIDKFKQKV 205
           + +  VKY  TI+  +  +  +L + P    E   ++R  V  G  P        ++Q V
Sbjct: 185 FWDDCVKYNCTIVQYIGEICRYLLAQPPSEEEQKHNVRLAVGNGLRPQI------WEQFV 238

Query: 206 QREDIT-IRQGYGMTE-------------------TSPCTLY----------TRFAIPEA 235
           +R  I  I + YG TE                       ++Y          T   I ++
Sbjct: 239 RRFGIPQIGEFYGATEGNSSLVNIDNHVGACGFNSRILPSVYPIRLIKVDEDTGELIRDS 298

Query: 236 K-------LGSTGQLV-----------MLGYLKNEEATKETVDSEGWLH------TGDVA 271
                    G  G LV             GY+ NE AT + +  + +        +GDV 
Sbjct: 299 DGLCIPCQPGEPGLLVGKIIQNDPLRRFDGYV-NEGATNKKIARDVFKKGDSAFLSGDVL 357

Query: 272 YYDEDGYFYIVDRTKELIKVKGNQVA 297
             DE GY Y  DRT +  + KG  V+
Sbjct: 358 VMDELGYLYFKDRTGDTFRWKGENVS 383

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 40.6 bits (96), Expect = 9e-04
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 48  PPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN 83
           P DF    +  +D   + ++SGTTG PKGV++SH+N
Sbjct: 133 PYDFDHA-VKGDDNYYIIFTSGTTGKPKGVQISHDN 167

Length = 503

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 13/90 (14%)

Query: 50  DFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQET 109
            F   ++  +D++ L Y+SG+T  P GV+++H     NL Q     ++  I   D +   
Sbjct: 184 SFVPVELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQ-----MILSIDLLDRNTHG 238

Query: 110 VLSVLPFFHIYGFNGILNVVM---MYGMHM 136
           V S LP +H  G    L+++    +YG H 
Sbjct: 239 V-SWLPLYHDMG----LSMIGFPAVYGGHS 263

Length = 612

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 263 GWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
           G+  TGD A  DEDGY++I+ R  ++I V G
Sbjct: 463 GYYFTGDGARRDEDGYYWILGRVDDVINVSG 493

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 1/32 (3%)

Query: 295 QVAPYKKLAGGVKFLETIPRNPAGKVLRNELK 326
           QV  YK++   V F+++IP+ P+GK+LR +L+
Sbjct: 501 QVVFYKRI-HKVFFVDSIPKAPSGKILRKDLR 531

Length = 537

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 57/240 (23%), Positives = 94/240 (39%), Gaps = 22/240 (9%)

Query: 63  MLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQ-ETVLSVLPFFHIYG 121
           +L YSSGTTG PK ++ S           +  +I  +    +  Q ET +   P  H YG
Sbjct: 105 LLQYSSGTTGEPKLIRRSWTE--------IDREIEAYNEALNCEQDETPIVACPVTHSYG 156

Query: 122 F-NGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHL 180
              G+L   +  G   + I    P+  +  +      IL+ VP +L  L       P   
Sbjct: 157 LICGVL-AALTRGSKPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLL---PGTF 212

Query: 181 ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGST 240
                +T G  P  ++   K +++       + Q YG +E    ++          LG+ 
Sbjct: 213 QFHAVMTSGT-PLPEAWFYKLRERTTY----MMQQYGCSEAGCVSICPDMKSHLD-LGNP 266

Query: 241 GQLVMLGYLKNEEATKETV--DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
              V +    +E A +E V    +  + T D+ Y  E G  + + R  ++I V G  V P
Sbjct: 267 LPHVSVSAGSDENAPEEIVVKMGDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYP 326

Length = 414

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 262 EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
            G+  TGD A  D+DGY +I  R  ++I V G
Sbjct: 474 PGYYFTGDGARRDKDGYIWITGRVDDVINVSG 505

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 40/165 (24%), Positives = 63/165 (38%), Gaps = 27/165 (16%)

Query: 67  SSGTTGVPKGVKLSHN---NCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN 123
           SSGTTG P     +       A  L + ++   V          + V       + YG  
Sbjct: 98  SSGTTGKPTVFGYTAKDIERWAELLARSLYSAGV-------RKGDKVQ----NAYGYGLF 146

Query: 124 GILNVVMMYGMH---MITIPKFTPET--YIECVVKYKPTILFVVPSLLLFLA---SHPAV 175
               + + YG        IP     T   +E +  +KPT++   PS LL+LA       +
Sbjct: 147 TG-GLGLHYGAERIGATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGI 205

Query: 176 TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTE 220
            P+ L S+++   GA P ++ +    K    R        YG+TE
Sbjct: 206 DPDKL-SLKKGIFGAEPWSEEM---RKVIENRFGCKAFDIYGLTE 246

Length = 438

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 40  FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDI-VN 98
           F  +    P +   PK  P D+  + Y+SGT+G PKGV L+H   A  +      D+ + 
Sbjct: 203 FLHMGKENPSETNPPK--PLDICTIMYTSGTSGDPKGVVLTHEAVATFV---RGVDLFME 257

Query: 99  HIPTSDTSQETVLSVLPFFHI 119
                 T  +  LS LP  HI
Sbjct: 258 QFEDKMTHDDVYLSFLPLAHI 278

Length = 660

>gnl|CDD|235313 PRK04813, PRK04813, D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 240 TGQLVMLGYLKNEEATKE---TVDSEGWLHTGDVAYYDEDGYFY 280
           +G  V  GYL N E T E   T D +   HTGD  Y ++   FY
Sbjct: 350 SGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYLEDGLLFY 393

Length = 503

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 58  PNDLAMLPYSSGTTGVPKGVKLSH 81
            +D AM+ Y+SGTTG PKG   +H
Sbjct: 99  KDDPAMIIYTSGTTGKPKGTVHTH 122

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	334
KOG1176|consensus	537		100.0
KOG1177|consensus	596		100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
PLN02654	666	acetate-CoA ligase	100.0
PLN02736	651	long-chain acyl-CoA synthetase	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PTZ00342	746	acyl-CoA synthetase; Provisional	100.0
KOG1256|consensus	691		100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PLN02861	660	long-chain-fatty-acid-CoA ligase	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
KOG1180|consensus	678		100.0
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK07638	487	acyl-CoA synthetase; Validated	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
PLN02614	666	long-chain acyl-CoA synthetase	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK09088	488	acyl-CoA synthetase; Validated	100.0
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	100.0
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	100.0
PLN03102	579	acyl-activating enzyme; Provisional	100.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	100.0
PRK07787	471	acyl-CoA synthetase; Validated	100.0
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	100.0
PRK07514	504	malonyl-CoA synthase; Validated	100.0
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK05857	540	acyl-CoA synthetase; Validated	100.0
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	100.0
PRK13388	540	acyl-CoA synthetase; Provisional	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
KOG1175|consensus	626		100.0
PRK06018	542	putative acyl-CoA synthetase; Provisional	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	100.0
PRK07867	529	acyl-CoA synthetase; Validated	100.0
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK08180	614	feruloyl-CoA synthase; Reviewed	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PLN02430	660	long-chain-fatty-acid-CoA ligase	100.0
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	100.0
PTZ00216	700	acyl-CoA synthetase; Provisional	100.0
PRK07798	533	acyl-CoA synthetase; Validated	100.0
PRK06178	567	acyl-CoA synthetase; Validated	100.0
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	100.0
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	100.0
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK13391	511	acyl-CoA synthetase; Provisional	100.0
PRK12316	5163	peptide synthase; Provisional	100.0
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	100.0
PRK06164	540	acyl-CoA synthetase; Validated	100.0
PRK12467	3956	peptide synthase; Provisional	100.0
PLN02479	567	acetate-CoA ligase	100.0
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK08308	414	acyl-CoA synthetase; Validated	100.0
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	100.0
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK05691	4334	peptide synthase; Validated	100.0
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	100.0
PRK12582	624	acyl-CoA synthetase; Provisional	100.0
PRK08162	545	acyl-CoA synthetase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13383	516	acyl-CoA synthetase; Provisional	100.0
PRK09192	579	acyl-CoA synthetase; Validated	100.0
PRK05850	578	acyl-CoA synthetase; Validated	100.0
PRK07868	994	acyl-CoA synthetase; Validated	100.0
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	100.0
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	100.0
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	100.0
KOG1179|consensus	649		100.0
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	100.0
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	100.0
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.94
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.93
PTZ00297	1452	pantothenate kinase; Provisional	99.92
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.9
KOG1178|consensus	1032		99.82
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.75
PRK09188	365	serine/threonine protein kinase; Provisional	99.4
TIGR03089	227	conserved hypothetical protein TIGR03089. This pro	99.25
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	98.99
KOG3628|consensus	1363		98.67
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	98.0
KOG3628|consensus	1363		97.68
PLN02249	597	indole-3-acetic acid-amido synthetase	97.59
PLN02247	606	indole-3-acetic acid-amido synthetase	97.21
PLN02620	612	indole-3-acetic acid-amido synthetase	96.72
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	89.54
cd02070	201	corrinoid_protein_B12-BD B12 binding domain of cor	80.54

>KOG1176|consensus

Probab=100.00  E-value=1.8e-57  Score=414.57  Aligned_cols=317  Identities=40%  Similarity=0.653  Sum_probs=262.4

Q ss_pred             CCcchhhHHHHHHhhhCCCCceEEEEcCCCCC-----CCCccc-hhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCch
Q psy12107          2 CNIPQLLEVGTKIGATLPNFRGTIVVGGEHDK-----SKNIFG-FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPK   75 (334)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~-----~~~~~~-~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK   75 (334)
                      +.|.+..+++.++...++  ..|+++......     ...... |.+++....+.. ...++.+|++.++|||||||.||
T Consensus       124 f~d~~~~~~i~~~~~~~~--~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dd~~~il~SSGTTg~PK  200 (537)
T KOG1176|consen  124 FVDEDFYDKISEATSKLA--LKIIVLTGDEGVISISDLVEDLDAFEDLMPEGLPDG-IRPVSEDDTAAILYSSGTTGLPK  200 (537)
T ss_pred             EEcCchHHHHHHHHhhcC--CceEEEecccCccccccccccccchhhccccCCCcc-cccCCCCCeEEEecCCCCCCCCc
Confidence            456778888888887776  445555433110     011122 555553222222 35677899999999999999999


Q ss_pred             hhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcC
Q psy12107         76 GVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYK  155 (334)
Q Consensus        76 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~  155 (334)
                      ||++||+++..+........       .....++.++.+|++|.+|+...+.+.+..|+++++...|+++.+++.|++|+
T Consensus       201 gV~lsHr~~~~~~~~~~~~~-------~~~~~~v~l~~lPl~H~~Gl~~~~~~~~~~~~~ii~~~~f~~~~~~~~i~kyk  273 (537)
T KOG1176|consen  201 GVVLSHRNLIANTLSIKIGW-------ELTSDDVYLCTLPLFHIYGLITLLLSLLAGGTTIICLRKFDAELFLDLIEKYK  273 (537)
T ss_pred             eEEEecHHHHHHHHHhhhcc-------cCCCCceEEEechHHHHhHHHHHHHHHHhCCceEEECCCCCHHHHHHHHHHhC
Confidence            99999999988866554443       14568999999999999999997777888888898888899999999999999


Q ss_pred             CeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCCCCc
Q psy12107        156 PTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEA  235 (334)
Q Consensus       156 ~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~  235 (334)
                      +|+++++|.++..|++.+....++++++|.+.+||+++++++.+++++.+|  ...+.+.||+||+++..+.+..... .
T Consensus       274 vt~~~~vP~~~~~l~~~p~~~~~~l~sl~~v~~gga~~~~~~~~~~~~~l~--~~~v~q~YGmTE~~~~~~~~~~~~e-~  350 (537)
T KOG1176|consen  274 VTHLFLVPPVLNMLAKSPIVKKYDLSSLRSVLSGGAPLSPATLEKVKERLP--NVTVIQGYGMTEAGGLITSNDWGPE-R  350 (537)
T ss_pred             EEEEEcChHHHHHHhcCCccCcccCCccEEEEecCCCCCHHHHHHHHHhCC--CceEEEeeccccccCceeecCCCcc-C
Confidence            999999999999999998777899999999999999999999999999998  5689999999999976665554432 3


Q ss_pred             cccCcccc------------------------------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccC
Q psy12107        236 KLGSTGQL------------------------------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRT  285 (334)
Q Consensus       236 ~~~~~G~~------------------------------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~  285 (334)
                      .++++|.+                              ++.||+++|++|++.|+.+|||+|||+|++|+||++++++|+
T Consensus       351 k~~svG~~~~g~~~~v~~e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy~D~DG~l~IvdR~  430 (537)
T KOG1176|consen  351 KPGSVGRLLPGVRVKVLDETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGYFDEDGYLYIVDRS  430 (537)
T ss_pred             cccccCccccceEEEeeCCCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEEEcCCCeEEEecch
Confidence            45555543                              789999999999999987799999999999999999999999


Q ss_pred             CceEEEcCEEee---------------------------------------------------------eeeeccCcEEE
Q psy12107        286 KELIKVKGNQVA---------------------------------------------------------PYKKLAGGVKF  308 (334)
Q Consensus       286 ~d~i~~~G~~i~---------------------------------------------------------~~~~~~~~i~~  308 (334)
                      +|+||.+|++|+                                                         +++.+.. |.|
T Consensus       431 KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~di~~~v~k~l~~y~~~~~-V~F  509 (537)
T KOG1176|consen  431 KDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEKDIIEYVRKKLPAYKLPGG-VVF  509 (537)
T ss_pred             hhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHHHHHHHHHhhCChhhccCe-EEE
Confidence            999999999999                                                         4444555 999


Q ss_pred             eecCCCCCCchhhHHHHhhhhcCC
Q psy12107        309 LETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       309 v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                      +++||+|++|||+|+.||+.+.+.
T Consensus       510 vd~lPKs~~GKi~R~~lr~~~~~~  533 (537)
T KOG1176|consen  510 VDELPKTPNGKILRRKLRDIAKKL  533 (537)
T ss_pred             eccCCCCCcchHHHHHHHHHHHhc
Confidence            999999999999999999998664

>KOG1177|consensus

Probab=100.00  E-value=1.4e-53  Score=366.35  Aligned_cols=304  Identities=28%  Similarity=0.486  Sum_probs=259.8

Q ss_pred             hCCCCceEEEEcCCCCCCCCccchhhhhc-CCCCC---CC--CCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhh
Q psy12107         17 TLPNFRGTIVVGGEHDKSKNIFGFKQLVT-SQPPD---FQ--LPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQ   90 (334)
Q Consensus        17 ~~~~~~~ii~~~~~~~~~~~~~~~~~ll~-~~~~~---~~--~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~   90 (334)
                      .+|.++++|..+++ ....+...|+|++. ...++   .+  .....|+|++.|.|||||||.|||+.+||.+++++...
T Consensus       187 ~lp~lthvi~~~ed-~~~~Ga~~~sev~~~~s~~~~a~l~~~~k~~~pdd~~niQFTSGTTG~PKgatLsH~~~~Nna~~  265 (596)
T KOG1177|consen  187 LLPELTHVILADED-HPLPGAFLLSEVLKAASKEERAKLADMSKWLSPDDAVNIQFTSGTTGAPKGATLSHYNFLNNARA  265 (596)
T ss_pred             ccccceEEEecCCC-CcCCCceehHHHHHhcchHHHHHHHhhhhhcCCCCceEEEeccCCCCCCcceeeehhhhhhhHHH
Confidence            57999999998843 23457889999983 11111   11  13567899999999999999999999999999999877


Q ss_pred             hccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEc-CCCCHHHHHHHHHHcCCeEEeechHHHHHH
Q psy12107         91 CVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITI-PKFTPETYIECVVKYKPTILFVVPSLLLFL  169 (334)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l  169 (334)
                      ....+       ++..+.++....|++|.+|+....++++..|++++++ +.|++.+.+++|+++++|.++++|+++..|
T Consensus       266 vg~r~-------g~~e~~~i~~~~Pl~H~~G~~~~~ma~l~~gat~Vfp~~~f~~k~alqai~~ekcT~l~gtPtM~~Dl  338 (596)
T KOG1177|consen  266 VGARA-------GYNEKHRICIPNPLYHCFGCVLGVMAALMHGATIVFPAPSFDPKDALQAISNEKCTTLYGTPTMFVDL  338 (596)
T ss_pred             HHHHh-------CcCcceEEEecCchHHHHHHHHHHHHHHHhCcEEEeeCCCCChHHHHHHHHhhceEEEecChHHHHHH
Confidence            66554       3567789999999999999999999999999999995 469999999999999999999999999999


Q ss_pred             hcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCCC----------------
Q psy12107        170 ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP----------------  233 (334)
Q Consensus       170 ~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~----------------  233 (334)
                      ++.++....+++++|.++.||+++|+++.+.+.+.....  .+...||+||++.+.+....+++                
T Consensus       339 ln~~~~~~~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~--~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~E  416 (596)
T KOG1177|consen  339 LNIPQKQQVDLSSLRKGVIGGAPVSPELLKLIVNQMNMK--DIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYE  416 (596)
T ss_pred             hcchhhccCchhhhhhheeCCCCCCHHHHHHHHHhhCce--eeEEEeeccccCcceeeecCCCCHHHHHhhhhhcccccc
Confidence            999999999999999999999999999999999877532  47789999999977665444332                


Q ss_pred             ---------CccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee-
Q psy12107        234 ---------EAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-  297 (334)
Q Consensus       234 ---------~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-  297 (334)
                               ....+..|++      .+.|||++++.|.++...+.||+|||+|.+|++|.++++||.+|+|+.+|++|| 
T Consensus       417 a~iv~~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~enG~i~iVGRskdmI~rGGENVyP  496 (596)
T KOG1177|consen  417 AAIVDKDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDENGTIEIVGRSKDMIIRGGENVYP  496 (596)
T ss_pred             cccccCCCCccccCCCceEEEEechhheeecCCcccchhhcccccceecCceEEEcCCCcEEEEEcccCeEEeCCcccCh
Confidence                     1222334444      677889999999999999999999999999999999999999999999999999 


Q ss_pred             ----------------------------------------------------------eeeeccCcEEEeecCCCCCCch
Q psy12107        298 ----------------------------------------------------------PYKKLAGGVKFLETIPRNPAGK  319 (334)
Q Consensus       298 ----------------------------------------------------------~~~~~~~~i~~v~~lP~t~~GK  319 (334)
                                                                                .|++|+. |.|++++|+|-+||
T Consensus       497 ~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t~E~lKa~Ck~klaHFKiPky-~vf~~~FPlT~tGK  575 (596)
T KOG1177|consen  497 TELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKTTAETLKAMCKGKLAHFKIPKY-FVFVDEFPLTTTGK  575 (596)
T ss_pred             HHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccccccccHHHHHHHHhcccccccCCcE-EEEeccCccccccc
Confidence                                                                      6778888 99999999999999


Q ss_pred             hhHHHHhhhhcC
Q psy12107        320 VLRNELKVFGTN  331 (334)
Q Consensus       320 i~r~~l~~~~~~  331 (334)
                      |+|.++|++.++
T Consensus       576 IqKFeir~~~k~  587 (596)
T KOG1177|consen  576 IQKFEIREMSKG  587 (596)
T ss_pred             chhHHHHHHHHh
Confidence            999999999763

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=6.2e-52  Score=376.43  Aligned_cols=281  Identities=27%  Similarity=0.380  Sum_probs=236.4

Q ss_pred             cchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchh
Q psy12107         38 FGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF  117 (334)
Q Consensus        38 ~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~  117 (334)
                      ..|++++.......+...++++|+++|+|||||||+||||+|+|+.+............      +..++|++++..++.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~dpl~ilYTSGTTG~PKgv~H~~gg~l~~~~~~~~~~~------~~~~~Dv~w~~ad~G  223 (528)
T COG0365         150 LWYDEAVEKASEKFEFEPLPADDPLFLLYTSGTTGKPKGIVHSHGGYLVEHRLTAKFHG------DLLPGDRFWNSSDPG  223 (528)
T ss_pred             ccHHHHhhccCCCCCccccCCCCeEEEEeCCCCCCCCceEEEeCchHHHHHHHHHHHhh------CCCCCCEEEeCCCch
Confidence            66777774443334344588999999999999999999999999988776655444321      255999999999999


Q ss_pred             hhhHHHHHHHHHHHhCcEEEEcCC--C-CHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCC
Q psy12107        118 HIYGFNGILNVVMMYGMHMITIPK--F-TPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPAT  194 (334)
Q Consensus       118 ~~~~~~~~~~~~~~~G~~~~~~~~--~-~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~  194 (334)
                      |++|..+.++.++..|+++++.+.  + +++.++++|+++++|++++.|+.++.|.+......+++++||.+.+.||+|+
T Consensus       224 W~~g~~~~v~~pL~~Gat~~~~eg~p~~~~~~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~~dlssLr~~~SaGEPLn  303 (528)
T COG0365         224 WIYGLWYSVFSPLASGATTVLYDGRPFYSPERLWEALEKYKVTIFGTSPTFLRRLMKLGLGEPYDLSSLRVLGSAGEPLN  303 (528)
T ss_pred             hhhCchHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHhCCceEeeCHHHHHHHHhcCCcccccchhheeeeccCCCCC
Confidence            999999999999999999998863  2 4999999999999999999999999999887666789999999999999999


Q ss_pred             HHHHHHHHHHhccCCCceeeccCCCCCCCccccccc---CC------------------CCccccCcccc--------cc
Q psy12107        195 KSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF---AI------------------PEAKLGSTGQL--------VM  245 (334)
Q Consensus       195 ~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~---~~------------------~~~~~~~~G~~--------~~  245 (334)
                      ++.++++.+.+|+   +|.+.||+||+|.+......   ..                  .+..++. |.+        ++
T Consensus       304 pe~~~w~~~~~g~---~i~d~~gqTEtg~~~~~~~~~~~~g~~g~p~pG~~~~vvdd~g~~~~~~~-G~Lvi~~~~p~~~  379 (528)
T COG0365         304 PEAFEWFYSALGV---WILDIYGQTETGMGFIAGRPPVKNGSSGLPLPGYAVRRVDDEGNPVPPGV-GELVVRLPWPGMA  379 (528)
T ss_pred             HHHHHHHHHHhCC---CEeccccccccCccccCCCCCcCCCCCCCCCCCceeEEECCCCCcCCCCc-eEEEEeCCCchhh
Confidence            9999999999975   89999999999955444322   00                  0111122 444        56


Q ss_pred             ccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee----------------------------
Q psy12107        246 LGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA----------------------------  297 (334)
Q Consensus       246 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------------------------  297 (334)
                      ++||++++.+.+++... ||.|||.+++|+||+++++||.||+||+.|++|.                            
T Consensus       380 ~~~w~d~er~~~~y~~~-~y~tGD~~~~DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg  458 (528)
T COG0365         380 LTYWNDPERYKEAYFGR-WYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKG  458 (528)
T ss_pred             hhhhCCHHHHHHHHhhc-eeecCceeEEccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCC
Confidence            79999999999888544 9999999999999999999999999999999999                            


Q ss_pred             -------------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhc
Q psy12107        298 -------------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGT  330 (334)
Q Consensus       298 -------------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~  330 (334)
                                                     ++..|+. |+|+++||||.||||.|+.||+...
T Consensus       459 ~~v~afVvL~~g~~~~~L~~ei~~~vr~~~~~~~~p~~-i~fv~~LPkT~sGKI~R~~lr~~~~  521 (528)
T COG0365         459 QIVLAFVVLAAGVEPNELAEEIRRHVARNIGPHAIPRK-IRFVDELPKTASGKIQRRLLRKILH  521 (528)
T ss_pred             cEEEEEEEecCCCChHHHHHHHHHHHHhccCcccCCce-EEEecCCCCCCcccHHHHHHHHHHh
Confidence                                           5567777 9999999999999999999999876

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=3.5e-49  Score=370.13  Aligned_cols=285  Identities=38%  Similarity=0.604  Sum_probs=235.8

Q ss_pred             chhhhhcCCC-CCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchh
Q psy12107         39 GFKQLVTSQP-PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF  117 (334)
Q Consensus        39 ~~~~ll~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~  117 (334)
                      .++++..... .......++++|+++++|||||||.||||++||+++..+.......+..     .....|++++++|++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~~-----~~~~~d~~l~~lPl~  224 (534)
T COG0318         150 TLEALAAEGPGPDADARPVDPDDLAFLLYTSGTTGLPKGVVLTHRNLLANAAGIAAALGG-----GLTPDDVVLSWLPLF  224 (534)
T ss_pred             cHHHHhhccCCcccccCCCCCCCEEEEEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhcc-----cCCCCceEEEecChH
Confidence            5666653221 1111123678999999999999999999999999999887666555421     056888899999999


Q ss_pred             hhhHHHHHHHHHHHhCcEEEEcC--CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCcccccc-ceeeeecCCCCC
Q psy12107        118 HIYGFNGILNVVMMYGMHMITIP--KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLAS-IREVTCGAAPAT  194 (334)
Q Consensus       118 ~~~~~~~~~~~~~~~G~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~-lr~v~~~G~~l~  194 (334)
                      |.+|+...++.++..|+++++.+  .|+++.++..+.++++|++.++|+++..|++++.....++.+ ||.+++||++++
T Consensus       225 H~~Gl~~~~~~~~~~G~~~v~~~~~~f~~~~~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~~~~~~~lr~~~~gg~~~~  304 (534)
T COG0318         225 HIFGLIVGLLAPLLGGGTLVLLSPEPFDPEEVLWLIEKYKVTVLSGVPTFLRELLDNPEKDDDDLSSSLRLVLSGGAPLP  304 (534)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCCCCcCHHHHHHHHHHhcceEEecchHHHHHHHhCCccCccccccceEEEEecCCcCC
Confidence            99999998788899999999988  599999999999999999999999999999988776666665 999999999999


Q ss_pred             HHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC---C------------------C---ccccCcccc------c
Q psy12107        195 KSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI---P------------------E---AKLGSTGQL------V  244 (334)
Q Consensus       195 ~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~---~------------------~---~~~~~~G~~------~  244 (334)
                      +++.+++++.|+  ...+++.||+||++.+++......   .                  +   ..++.+|++      +
T Consensus       305 ~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~pg~vGei~irgp~v  382 (534)
T COG0318         305 PELLERFEERFG--PIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLPGEVGEIWVRGPNV  382 (534)
T ss_pred             HHHHHHHHHHhC--CCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCCCCceEEEEECchh
Confidence            999999999998  347999999999986554332221   0                  0   111334443      7


Q ss_pred             cccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee---------------------------
Q psy12107        245 MLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA---------------------------  297 (334)
Q Consensus       245 ~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~---------------------------  297 (334)
                      +.|||++|+.|...|..+|||+|||+|++|+||++++.||.+|+|+.+|+||+                           
T Consensus       383 ~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~  462 (534)
T COG0318         383 MKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERW  462 (534)
T ss_pred             hhhhcCChHHHHHhhccCCeeeecceEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCcc
Confidence            89999999999998865699999999999999999999999999999999999                           


Q ss_pred             --------------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 --------------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 --------------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                                      .++.|+. |.++++||+|++||++|++||+.+.+
T Consensus       463 Ge~~~a~v~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~-v~~v~~lP~t~sGKi~r~~lr~~~~~  527 (534)
T COG0318         463 GERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVPRI-VVFVDELPRTASGKIDRRALREEYRA  527 (534)
T ss_pred             CceEEEEEEEcCCCCCCCCHHHHHHHHHhhhhcccCCeE-EEEeCCCCCCCchhhhHHHHHHHHHh
Confidence                                            3445566 99999999999999999999998754

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=2.1e-46  Score=358.99  Aligned_cols=319  Identities=20%  Similarity=0.263  Sum_probs=244.9

Q ss_pred             hhHHHHHHhhhCC-CCceEEEEcCCCCC----CCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcc
Q psy12107          7 LLEVGTKIGATLP-NFRGTIVVGGEHDK----SKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSH   81 (334)
Q Consensus         7 ~~~~~~~~~~~~~-~~~~ii~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~   81 (334)
                      +.+.+.++...+| .+++++++......    ......|++++.......+....+++++++|+|||||||.||||+++|
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PKgV~~s~  258 (625)
T TIGR02188       179 LKAIVDEALEKCPVSVEHVLVVRRTGNPVPWVEGRDVWWHDLMAKASAYCEPEPMDSEDPLFILYTSGSTGKPKGVLHTT  258 (625)
T ss_pred             hHHHHHHHHHhCCCCccEEEEEcCCCCCcCccccccccHHHHHhhcCCCCCceecCCCCceEEEecCCCCCCCCeEEECc
Confidence            3455666666677 67777777532110    112345677664322222234567899999999999999999999999


Q ss_pred             hHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC----CCHHHHHHHHHHcCCe
Q psy12107         82 NNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK----FTPETYIECVVKYKPT  157 (334)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~----~~~~~~~~~i~~~~~t  157 (334)
                      +++..+.........      +..++|++++..|++|+.+....++.++..|+++++.+.    +++..+++.|+++++|
T Consensus       259 ~~~~~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt  332 (625)
T TIGR02188       259 GGYLLYAAMTMKYVF------DIKDGDIFWCTADVGWITGHSYIVYGPLANGATTVMFEGTPTYPDPGRFWEIIEKHKVT  332 (625)
T ss_pred             cHhHHHHHHHHHhcc------CCCCCcEEEECCCchhhhccHHHHHHHHHcCCeEEEECCCCCCCChhHHHHHHHHhCCe
Confidence            998655433222111      256789999999999998877668899999999998753    4799999999999999


Q ss_pred             EEeechHHHHHHhcCCCC--CccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC---
Q psy12107        158 ILFVVPSLLLFLASHPAV--TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI---  232 (334)
Q Consensus       158 ~l~~~p~~l~~l~~~~~~--~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~---  232 (334)
                      +++++|++++.|.+....  ...++++||.++++|+++++++.+++.+.++..++++++.||+||+++.++......   
T Consensus       333 ~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~  412 (625)
T TIGR02188       333 IFYTAPTAIRALMRLGDEWVKKHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPT  412 (625)
T ss_pred             EEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCc
Confidence            999999999999876532  235688999999999999999999999999744578999999999986543211100   


Q ss_pred             ---------------------CCcc-ccCccc--------cccccccCCccccccccC--CCCceecCceEEEecCCcEE
Q psy12107        233 ---------------------PEAK-LGSTGQ--------LVMLGYLKNEEATKETVD--SEGWLHTGDVAYYDEDGYFY  280 (334)
Q Consensus       233 ---------------------~~~~-~~~~G~--------~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~dg~~~  280 (334)
                                           .... .+..|+        .++.|||++++.+...+.  .+|||+|||++++|+||+++
T Consensus       413 ~~~~~G~p~~g~~~~i~d~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~  492 (625)
T TIGR02188       413 KPGSATLPFFGIEPAVVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDKDGYIW  492 (625)
T ss_pred             CCCcccCCcCCceEEEECCCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcCCCcEE
Confidence                                 0111 334443        267899999988777653  37899999999999999999


Q ss_pred             EEccCCceEEEcCEEee------------------------------------------------------------eee
Q psy12107        281 IVDRTKELIKVKGNQVA------------------------------------------------------------PYK  300 (334)
Q Consensus       281 ~~GR~~d~i~~~G~~i~------------------------------------------------------------~~~  300 (334)
                      ++||.||+||++|++|+                                                            +++
T Consensus       493 i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~l~~~~  572 (625)
T TIGR02188       493 ITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDELRKELRKHVRKEIGPIA  572 (625)
T ss_pred             EEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHhhcCCCc
Confidence            99999999999999998                                                            455


Q ss_pred             eccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        301 KLAGGVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       301 ~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                      .|.. |+++++||+|++||++|+.|++...+.
T Consensus       573 ~P~~-i~~v~~lP~t~sGKi~r~~l~~~~~~~  603 (625)
T TIGR02188       573 KPDK-IRFVPGLPKTRSGKIMRRLLRKIAAGE  603 (625)
T ss_pred             cCcE-EEECCCCCCCCCccchHHHHHHHHcCC
Confidence            6666 999999999999999999999987543

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=8.3e-47  Score=362.88  Aligned_cols=269  Identities=22%  Similarity=0.296  Sum_probs=220.0

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhh-hhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLE-QCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      .++++|+++|+|||||||.||||+++|++++.... .....+       +..++|++++..|++|+.+....++.++..|
T Consensus       271 ~~~~~d~~~ilyTSGTTG~PKgVv~sh~~~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G  343 (666)
T PLN02654        271 WVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYTATTFKYAF-------DYKPTDVYWCTADCGWITGHSYVTYGPMLNG  343 (666)
T ss_pred             ecCCCCceEEEecCCCCCCCceEEecccHHHHHHHHHHHHhc-------CCCCCcEEEEcCCchhhhhhHHHHHHHHHcC
Confidence            46789999999999999999999999999764432 222222       3678899999999999999877788999999


Q ss_pred             cEEEEcCC----CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCC--CCccccccceeeeecCCCCCHHHHHHHHHHhcc
Q psy12107        134 MHMITIPK----FTPETYIECVVKYKPTILFVVPSLLLFLASHPA--VTPEHLASIREVTCGAAPATKSLIDKFKQKVQR  207 (334)
Q Consensus       134 ~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~  207 (334)
                      +++++.+.    +++..+++.|+++++|+++++|++++.|.+...  ....++++||.++++|+++++++.+++.+.+|.
T Consensus       344 ~tvvl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~  423 (666)
T PLN02654        344 ATVLVFEGAPNYPDSGRCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYVTRHSRKSLRVLGSVGEPINPSAWRWFFNVVGD  423 (666)
T ss_pred             ceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhhCccccccCChhheeEEEEecCCCCHHHHHHHHHHhCC
Confidence            99998763    589999999999999999999999999987653  234578899999999999999999999999984


Q ss_pred             CCCceeeccCCCCCCCcccccccCC------------------------CCccccCcccc--------ccccccCCcccc
Q psy12107        208 EDITIRQGYGMTETSPCTLYTRFAI------------------------PEAKLGSTGQL--------VMLGYLKNEEAT  255 (334)
Q Consensus       208 ~~~~i~~~YG~tE~g~~~~~~~~~~------------------------~~~~~~~~G~~--------~~~gy~~~~~~~  255 (334)
                      ..+++.+.||+||+++.........                        .+...+..|++        ++.|||++++.+
T Consensus       424 ~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~  503 (666)
T PLN02654        424 SRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERY  503 (666)
T ss_pred             CCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEECCCCCCCCCCCceEEEEcCCCchhhhhhcCChHHH
Confidence            3468999999999886443221100                        00111223432        678999999988


Q ss_pred             ccccCC--CCceecCceEEEecCCcEEEEccCCceEEEcCEEee------------------------------------
Q psy12107        256 KETVDS--EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA------------------------------------  297 (334)
Q Consensus       256 ~~~~~~--~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~------------------------------------  297 (334)
                      ...+..  +|||+|||++++|+||+++++||.||+||++|++|+                                    
T Consensus       504 ~~~~~~~~~g~~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv  583 (666)
T PLN02654        504 ETTYFKPFAGYYFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVT  583 (666)
T ss_pred             HHhhhhcCCCEEEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEE
Confidence            766532  789999999999999999999999999999999999                                    


Q ss_pred             ------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 ------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 ------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                              ++++|.. |+++++||+|++|||+|+.||+...+
T Consensus       584 l~~~~~~~~~l~~~l~~~~~~~L~~~~~P~~-i~~v~~lP~T~sGKi~r~~l~~~~~~  640 (666)
T PLN02654        584 LVEGVPYSEELRKSLILTVRNQIGAFAAPDK-IHWAPGLPKTRSGKIMRRILRKIASR  640 (666)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHhCCCCcCCCE-EEECCCCCCCCCcCchHHHHHHHHcC
Confidence                                    4556666 99999999999999999999998765

>PLN02736 long-chain acyl-CoA synthetase

Probab=100.00  E-value=1.2e-46  Score=361.69  Aligned_cols=282  Identities=29%  Similarity=0.472  Sum_probs=216.0

Q ss_pred             cchhhHHHHHHhhhCCCCceEEEEcCCCCC--------CCCccchhhhhcC-CCCCCCCCCCCCCCEEEEecCCCCCCCc
Q psy12107          4 IPQLLEVGTKIGATLPNFRGTIVVGGEHDK--------SKNIFGFKQLVTS-QPPDFQLPKISPNDLAMLPYSSGTTGVP   74 (334)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~--------~~~~~~~~~ll~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~P   74 (334)
                      +.+..+.+.++..++|.++.+++++.....        .....+|++++.. .....+.....++|+++|+|||||||.|
T Consensus       157 ~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~P  236 (651)
T PLN02736        157 VPQTLNTLLSCLSEIPSVRLIVVVGGADEPLPSLPSGTGVEIVTYSKLLAQGRSSPQPFRPPKPEDVATICYTSGTTGTP  236 (651)
T ss_pred             CHHHHHHHHHHhhcCCCceEEEEECCCchhhhhhhccCCcEEEEHHHHHHhcccCCCCCCCCCccceEEEEEcCCCCCCC
Confidence            455667777777788888888887532210        1124577877732 1111112345789999999999999999


Q ss_pred             hhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHc
Q psy12107         75 KGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKY  154 (334)
Q Consensus        75 K~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~  154 (334)
                      |||++||+++..+.......+       ...++|++++.+|++|.++... ++.++..|+++++.+. ++..+++.|+++
T Consensus       237 KGV~lsh~~l~~~~~~~~~~~-------~~~~~d~~l~~lPl~h~~~~~~-~~~~l~~G~~i~~~~~-~~~~~~~~i~~~  307 (651)
T PLN02736        237 KGVVLTHGNLIANVAGSSLST-------KFYPSDVHISYLPLAHIYERVN-QIVMLHYGVAVGFYQG-DNLKLMDDLAAL  307 (651)
T ss_pred             cEEEEecHHHHHHHHHHHhcc-------CCCCCCEEEEeCCHHHHHHHHH-HHHHHHcCCEEEEeCC-CHHHHHHHHHHh
Confidence            999999999988776655433       2567899999999999999876 6778899999988764 788999999999


Q ss_pred             CCeEEeechHHHHHHhcCCC----------------------------CCc-------------ccc-ccceeeeecCCC
Q psy12107        155 KPTILFVVPSLLLFLASHPA----------------------------VTP-------------EHL-ASIREVTCGAAP  192 (334)
Q Consensus       155 ~~t~l~~~p~~l~~l~~~~~----------------------------~~~-------------~~~-~~lr~v~~~G~~  192 (334)
                      ++|+++++|+++..|.+...                            ...             ..+ +++|.+++||++
T Consensus       308 ~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~gGa~  387 (651)
T PLN02736        308 RPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVRFMSSGASP  387 (651)
T ss_pred             CCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEEEEEeCCCC
Confidence            99999999999988754210                            000             011 479999999999


Q ss_pred             CCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCCC--------------------------CccccCcccc---
Q psy12107        193 ATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP--------------------------EAKLGSTGQL---  243 (334)
Q Consensus       193 l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~--------------------------~~~~~~~G~~---  243 (334)
                      +++++.+++.+.++.   ++++.||+||+++..+.......                          ...++..|++   
T Consensus       388 l~~~~~~~~~~~~g~---~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~GEl~vr  464 (651)
T PLN02736        388 LSPDVMEFLRICFGG---RVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRGEICVR  464 (651)
T ss_pred             CCHHHHHHHHHHhCC---CeEEEechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCceEEec
Confidence            999999999998864   79999999998765432211100                          0001112443   


Q ss_pred             ---ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEE-cCEEee
Q psy12107        244 ---VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKV-KGNQVA  297 (334)
Q Consensus       244 ---~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~i~  297 (334)
                         ++.|||++|+.|++.|+.+|||+|||+|++|+||+++++||.||+||+ +|++|+
T Consensus       465 gp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~  522 (651)
T PLN02736        465 GPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIA  522 (651)
T ss_pred             CCccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEec
Confidence               789999999999999988999999999999999999999999999998 699998

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=3e-46  Score=353.51  Aligned_cols=290  Identities=40%  Similarity=0.641  Sum_probs=232.6

Q ss_pred             cchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchh
Q psy12107         38 FGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF  117 (334)
Q Consensus        38 ~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~  117 (334)
                      ..|.+++.......+.....++++++++|||||||.||+|+++|+++..+.............  ....+++++..+|++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~pl~  254 (560)
T PLN02574        177 PKFYELIKEDFDFVPKPVIKQDDVAAIMYSSGTTGASKGVVLTHRNLIAMVELFVRFEASQYE--YPGSDNVYLAALPMF  254 (560)
T ss_pred             ccHHHHhhcCCcccccCCCCcCCEEEEEcCCCccCCCcEEEEeHHHHHHHHHHHHhccccccc--cCCCCcEEEEecchH
Confidence            455665532222222234567899999999999999999999999998776654332111000  123568889999999


Q ss_pred             hhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCC-CccccccceeeeecCCCCCHH
Q psy12107        118 HIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV-TPEHLASIREVTCGAAPATKS  196 (334)
Q Consensus       118 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~-~~~~~~~lr~v~~~G~~l~~~  196 (334)
                      |.+++...++.++..|+++++.+.+++..+++.|+++++|+++++|+++..|.+.... ...+++++|.+++||++++++
T Consensus       255 h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~lr~~~~gg~~l~~~  334 (560)
T PLN02574        255 HIYGLSLFVVGLLSLGSTIVVMRRFDASDMVKVIDRFKVTHFPVVPPILMALTKKAKGVCGEVLKSLKQVSCGAAPLSGK  334 (560)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEecCCCHHHHHHHHHHcCCeEEecCCHHHHHHHhCccccccCccccceEEEEecccCCHH
Confidence            9999887777888899999998889999999999999999999999999999887542 345688999999999999999


Q ss_pred             HHHHHHHHhccCCCceeeccCCCCCCCcccccccC-------------------------CCCccccCcccc------cc
Q psy12107        197 LIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA-------------------------IPEAKLGSTGQL------VM  245 (334)
Q Consensus       197 ~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~-------------------------~~~~~~~~~G~~------~~  245 (334)
                      +.+++.+.++  ++.+++.||+||++.+.+.....                         ..+...+..|++      ++
T Consensus       335 ~~~~~~~~~~--~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~  412 (560)
T PLN02574        335 FIQDFVQTLP--HVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVM  412 (560)
T ss_pred             HHHHHHHHCC--CCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchh
Confidence            9999999986  56899999999988544311000                         011122344444      67


Q ss_pred             ccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee----------------------------
Q psy12107        246 LGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA----------------------------  297 (334)
Q Consensus       246 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------------------------  297 (334)
                      .||+++++.+.+.|..+|||+|||+|++++||+++++||.+|+||++|++|+                            
T Consensus       413 ~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g  492 (560)
T PLN02574        413 KGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECG  492 (560)
T ss_pred             hhhcCChhHhhhhccCCCCcccceEEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCC
Confidence            8999999999998888999999999999999999999999999999999999                            


Q ss_pred             -----------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        298 -----------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       298 -----------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                                                   +++.|+. ++++++||+|++|||+|+.|++.+.+.
T Consensus       493 ~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~-v~~v~~iP~t~~GKi~r~~L~~~~~~~  555 (560)
T PLN02574        493 EIPVAFVVRRQGSTLSQEAVINYVAKQVAPYKKVRK-VVFVQSIPKSPAGKILRRELKRSLTNS  555 (560)
T ss_pred             cceEEEEEeCCCCCCCHHHHHHHHHHhccCcccCcE-EEEeeccCCCCcchhhHHHHHHHHhhc
Confidence                                         5666665 999999999999999999999998664

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.6e-46  Score=355.39  Aligned_cols=317  Identities=21%  Similarity=0.263  Sum_probs=242.5

Q ss_pred             hHHHHHHhhhCCCCceEEEEcCCCCC----CCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchH
Q psy12107          8 LEVGTKIGATLPNFRGTIVVGGEHDK----SKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN   83 (334)
Q Consensus         8 ~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~   83 (334)
                      .+.+.++...++.++.+++++.....    ......|++++.......+....+++|+++|+|||||||.||||+++|++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~  269 (637)
T PRK00174        190 KANVDEALANCPSVEKVIVVRRTGGDVDWVEGRDLWWHELVAGASDECEPEPMDAEDPLFILYTSGSTGKPKGVLHTTGG  269 (637)
T ss_pred             HHHHHHHHHhCCCccEEEEEcCCCCCcCcCCCCcccHHHHHhhcCCCCCccccCCCCcEEEEECCCCCCCCceEEeCcch
Confidence            34555666667778888877642210    11234567766432222223456789999999999999999999999999


Q ss_pred             HHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC----CCHHHHHHHHHHcCCeEE
Q psy12107         84 CAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK----FTPETYIECVVKYKPTIL  159 (334)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l  159 (334)
                      +..+.........      ...++|++++..|++|+.+....++.++..|+++++.+.    +++..+++.|+++++|++
T Consensus       270 ~~~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~~  343 (637)
T PRK00174        270 YLVYAAMTMKYVF------DYKDGDVYWCTADVGWVTGHSYIVYGPLANGATTLMFEGVPNYPDPGRFWEVIDKHKVTIF  343 (637)
T ss_pred             hHHHHHHHHHhcc------CCCCCcEEEEcCCchHhhhhHHHHHHHHHcCCEEEEECCCCCCCChHHHHHHHHhcCCeEE
Confidence            8755433222111      256789999999999999887778899999999998653    479999999999999999


Q ss_pred             eechHHHHHHhcCCCC--CccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccC------
Q psy12107        160 FVVPSLLLFLASHPAV--TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA------  231 (334)
Q Consensus       160 ~~~p~~l~~l~~~~~~--~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~------  231 (334)
                      .++|++++.|++....  ...++++||.++++|+++++++.+++.+.++..++++++.||+||++...+.....      
T Consensus       344 ~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~  423 (637)
T PRK00174        344 YTAPTAIRALMKEGDEHPKKYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKP  423 (637)
T ss_pred             eecHHHHHHHHhcCCcccccCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCcCC
Confidence            9999999999876542  23567899999999999999999999999874346899999999998654321110      


Q ss_pred             ----C--------------CCccccCccc--------cccccccCCccccccccC--CCCceecCceEEEecCCcEEEEc
Q psy12107        232 ----I--------------PEAKLGSTGQ--------LVMLGYLKNEEATKETVD--SEGWLHTGDVAYYDEDGYFYIVD  283 (334)
Q Consensus       232 ----~--------------~~~~~~~~G~--------~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~dg~~~~~G  283 (334)
                          .              .+...+..|+        .++.|||++++.+.+.+.  .+|||+|||++++++||+++++|
T Consensus       424 ~~vG~p~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~~~G  503 (637)
T PRK00174        424 GSATRPLPGIQPAVVDEEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDEDGYYWITG  503 (637)
T ss_pred             CcccCCCCCceEEEECCCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcCCCcEEEEE
Confidence                0              0111233343        267899999988777652  47899999999999999999999


Q ss_pred             cCCceEEEcCEEee------------------------------------------------------------eeeecc
Q psy12107        284 RTKELIKVKGNQVA------------------------------------------------------------PYKKLA  303 (334)
Q Consensus       284 R~~d~i~~~G~~i~------------------------------------------------------------~~~~~~  303 (334)
                      |.||+||++|++|+                                                            +++.|.
T Consensus       504 R~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~  583 (637)
T PRK00174        504 RVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELRKELRNWVRKEIGPIAKPD  583 (637)
T ss_pred             ecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhcCCccCCC
Confidence            99999999999998                                                            344555


Q ss_pred             CcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        304 GGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       304 ~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                      . |+++++||+|++||++|++|++...+
T Consensus       584 ~-i~~v~~lP~t~~GKi~R~~L~~~~~~  610 (637)
T PRK00174        584 V-IQFAPGLPKTRSGKIMRRILRKIAEG  610 (637)
T ss_pred             E-EEEcCCCCCCCCcchHHHHHHHHHcC
Confidence            5 99999999999999999999998654

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.7e-46  Score=353.21  Aligned_cols=267  Identities=27%  Similarity=0.440  Sum_probs=219.9

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ..+++|+++|+|||||||.||+|+++|+++..+.......+       ....+|++++.+|++|++++...++.++..|+
T Consensus       179 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-------~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~  251 (539)
T PRK06334        179 DKDPEDVAVILFTSGTEKLPKGVPLTHANLLANQRACLKFF-------SPKEDDVMMSFLPPFHAYGFNSCTLFPLLSGV  251 (539)
T ss_pred             CCCcCCEEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-------CCCCCceEEEecchHhhhhhHHHHHHHHHcCC
Confidence            45679999999999999999999999999987765544332       25678999999999999998876788899999


Q ss_pred             EEEEcC-CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCcee
Q psy12107        135 HMITIP-KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR  213 (334)
Q Consensus       135 ~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~  213 (334)
                      ++++.. .+++..+++.|+++++|+++++|+++..|++........+++||.+++||+++++++.+++.+.|+  ++.++
T Consensus       252 ~vv~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~--~~~i~  329 (539)
T PRK06334        252 PVVFAYNPLYPKKIVEMIDEAKVTFLGSTPVFFDYILKTAKKQESCLPSLRFVVIGGDAFKDSLYQEALKTFP--HIQLR  329 (539)
T ss_pred             eEEEecCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHHhhhhcccccccccEEEECCccCCHHHHHHHHHHCC--CCeEE
Confidence            998875 479999999999999999999999999998876555567889999999999999999999999996  56899


Q ss_pred             eccCCCCCCCcccccccCC------------------------CCccccCcccc------ccccccCCccccccc-cCCC
Q psy12107        214 QGYGMTETSPCTLYTRFAI------------------------PEAKLGSTGQL------VMLGYLKNEEATKET-VDSE  262 (334)
Q Consensus       214 ~~YG~tE~g~~~~~~~~~~------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~-~~~~  262 (334)
                      +.||+||++.+++......                        .+...+..|++      ++.||+++++.+... ...+
T Consensus       330 ~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~  409 (539)
T PRK06334        330 QGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGE  409 (539)
T ss_pred             ecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccceeeCCc
Confidence            9999999986544321110                        01122333443      788999999865432 2347


Q ss_pred             CceecCceEEEecCCcEEEEccCCceEEEcCEEee---------------------------------------------
Q psy12107        263 GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA---------------------------------------------  297 (334)
Q Consensus       263 ~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~---------------------------------------------  297 (334)
                      +||+|||+|++|++|++++.||.+|+||++|++|+                                             
T Consensus       410 ~w~~TGD~g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  489 (539)
T PRK06334        410 TWYVTGDLGYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEKVRLCLFTTFPTSI  489 (539)
T ss_pred             eeEECCCEEEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCceEEEEEEeccCCh
Confidence            89999999999999999999999999999999999                                             


Q ss_pred             -------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 -------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 -------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                   ++++|+. |+++++||+|++|||+|++|++....
T Consensus       490 ~~~~~~l~~~~~~~~~~P~~-i~~v~~lP~t~~GKi~r~~L~~~~~~  535 (539)
T PRK06334        490 SEVNDILKNSKTSSILKISY-HHQVESIPMLGTGKPDYCSLNALAKS  535 (539)
T ss_pred             HHHHHHHHhcCCcccccchh-eeeecccccccCCcccHHHHHHHHHH
Confidence                         2334444 88999999999999999999987543

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=2e-45  Score=351.95  Aligned_cols=312  Identities=26%  Similarity=0.422  Sum_probs=243.9

Q ss_pred             hhhHHHHHHhhhCCCCceEEEEcCCCC---------------CCCCccchhhhhcCCCCC--CCCCCCCCCCEEEEecCC
Q psy12107          6 QLLEVGTKIGATLPNFRGTIVVGGEHD---------------KSKNIFGFKQLVTSQPPD--FQLPKISPNDLAMLPYSS   68 (334)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~ii~~~~~~~---------------~~~~~~~~~~ll~~~~~~--~~~~~~~~~~~a~i~~TS   68 (334)
                      +..+++..+....+.++.++.++....               ...+...|.+.+......  .......++++++++|||
T Consensus       143 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~i~~TS  222 (632)
T PRK07529        143 DIWQKVAEVLAALPELRTVVEVDLARYLPGPKRLAVPLIRRKAHARILDFDAELARQPGDRLFSGRPIGPDDVAAYFHTG  222 (632)
T ss_pred             hHHHHHHHHHhcCCcceeEEEecCcccccccccccccccccccccccCCHHHHHhcCCCccccccCCCCcCceEEEEECC
Confidence            455677777777888888888764321               112345677766322211  112334679999999999


Q ss_pred             CCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC--C----
Q psy12107         69 GTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK--F----  142 (334)
Q Consensus        69 GTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~--~----  142 (334)
                      ||||.||+|+++|+++..+.......+       ...+++++++.+|++|.++....++.++..|+++++.++  +    
T Consensus       223 GTTG~PK~v~~sh~~l~~~~~~~~~~~-------~~~~~d~~l~~~pl~h~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~  295 (632)
T PRK07529        223 GTTGMPKLAQHTHGNEVANAWLGALLL-------GLGPGDTVFCGLPLFHVNALLVTGLAPLARGAHVVLATPQGYRGPG  295 (632)
T ss_pred             CccCcCCEEEEcHHHHHHHHHHHHHhc-------CCCCCCEEEEecCchhhhHHHHHHHHHHHCCCEEEecCccccCcch
Confidence            999999999999999987765544333       256889999999999999988878899999999998763  2    


Q ss_pred             CHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCC
Q psy12107        143 TPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS  222 (334)
Q Consensus       143 ~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g  222 (334)
                      ....+++.|+++++|++.++|+++..|++... ...++++||.+++||+++++++.+++++.++.   ++++.||+||++
T Consensus       296 ~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~~~slr~v~~gg~~l~~~l~~~~~~~~g~---~l~~~YG~TE~~  371 (632)
T PRK07529        296 VIANFWKIVERYRINFLSGVPTVYAALLQVPV-DGHDISSLRYALCGAAPLPVEVFRRFEAATGV---RIVEGYGLTEAT  371 (632)
T ss_pred             HHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcc-cCCCccceEEEEEcCCCCCHHHHHHHHHHhCC---cEeeeecccccC
Confidence            13678999999999999999999999988653 34578899999999999999999999999864   799999999998


Q ss_pred             CcccccccCC----------------------------CCccccCcccc------ccccccCCccccccccCCCCceecC
Q psy12107        223 PCTLYTRFAI----------------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTG  268 (334)
Q Consensus       223 ~~~~~~~~~~----------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TG  268 (334)
                      .+...+....                            .+...+..|++      ++.||++++ .+...+..++||+||
T Consensus       372 ~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~-~~~~~~~~~gw~~TG  450 (632)
T PRK07529        372 CVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAA-HNKGLWLEDGWLNTG  450 (632)
T ss_pred             cccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCc-cccccccCCCceEcC
Confidence            6554332110                            01112334444      688999765 456666678999999


Q ss_pred             ceEEEecCCcEEEEccCCceEEEcCEEee---------------------------------------------------
Q psy12107        269 DVAYYDEDGYFYIVDRTKELIKVKGNQVA---------------------------------------------------  297 (334)
Q Consensus       269 D~~~~~~dg~~~~~GR~~d~i~~~G~~i~---------------------------------------------------  297 (334)
                      |+|++++||++++.||.||+||.+|++|+                                                   
T Consensus       451 Dlg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~~~l~~~  530 (632)
T PRK07529        451 DLGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAF  530 (632)
T ss_pred             cEEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCHHHHHHH
Confidence            99999999999999999999999999999                                                   


Q ss_pred             -------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhc
Q psy12107        298 -------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGT  330 (334)
Q Consensus       298 -------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~  330 (334)
                             .++.|.. |.++++||+|++|||+|++||+.+.
T Consensus       531 ~~~~l~~~~~~P~~-i~~v~~lP~t~~GKi~r~~Lr~~~~  569 (632)
T PRK07529        531 ARDHIAERAAVPKH-VRILDALPKTAVGKIFKPALRRDAI  569 (632)
T ss_pred             HHHhcchhccCCcE-EEEecCCCCCCCCcccHHHHHHHHH
Confidence                   2356666 9999999999999999999998763

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-45  Score=350.68  Aligned_cols=302  Identities=24%  Similarity=0.383  Sum_probs=239.9

Q ss_pred             hCCCCceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCcc
Q psy12107         17 TLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDI   96 (334)
Q Consensus        17 ~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~   96 (334)
                      .+|.++.++++++......+..++++++.......+.....++++++++|||||||.||+|+++|+++..+.......+ 
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-  241 (570)
T PRK04319        163 DLPSLKHVLLVGEDVEEGPGTLDFNALMEQASDEFDIEWTDREDGAILHYTSGSTGKPKGVLHVHNAMLQHYQTGKYVL-  241 (570)
T ss_pred             cCCCceEEEEECCCcCCCcCccCHHHHHhhcCCcCCccccCCCCCEEEEeCCCCCCCCCEEEEecHHHHHHHHHHHHhc-
Confidence            4566777777764332223456787777432222223455678999999999999999999999999987765544433 


Q ss_pred             ccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcC-CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCC-
Q psy12107         97 VNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKPTILFVVPSLLLFLASHPA-  174 (334)
Q Consensus        97 ~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~-  174 (334)
                            ...++|++++..|++|.++....++.++..|+++++.+ .+++..+++.|+++++|+++++|++++.|.+... 
T Consensus       242 ------~~~~~d~~~~~~~~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~  315 (570)
T PRK04319        242 ------DLHEDDVYWCTADPGWVTGTSYGIFAPWLNGATNVIDGGRFSPERWYRILEDYKVTVWYTAPTAIRMLMGAGDD  315 (570)
T ss_pred             ------CCCCCceEEecCChHHhhCchHHHHHHHhcCceEEEECCCCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhcCCc
Confidence                  25678899999999999988777889999999988875 5899999999999999999999999999987543 


Q ss_pred             -CCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC---------------------
Q psy12107        175 -VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI---------------------  232 (334)
Q Consensus       175 -~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~---------------------  232 (334)
                       ....++++||.+++||+++++++.+++++.++.   ++++.||+||++.++.......                     
T Consensus       316 ~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~---~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~  392 (570)
T PRK04319        316 LVKKYDLSSLRHILSVGEPLNPEVVRWGMKVFGL---PIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVDD  392 (570)
T ss_pred             ccccCCcccceEEEEcccCCCHHHHHHHHHHhCC---CeEeceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEECC
Confidence             234567899999999999999999999998864   7999999999986543211100                     


Q ss_pred             --CCccccCcccc--------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee-----
Q psy12107        233 --PEAKLGSTGQL--------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-----  297 (334)
Q Consensus       233 --~~~~~~~~G~~--------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-----  297 (334)
                        .+...+..|++        ++.||+++++.+.+.|. +|||+|||+++++++|+++++||.+|+|+.+|++|+     
T Consensus       393 ~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~-~gw~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE  471 (570)
T PRK04319        393 QGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFA-GDWYVSGDSAYMDEDGYFWFQGRVDDVIKTSGERVGPFEVE  471 (570)
T ss_pred             CCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhc-CCceEeCcEEEECCCeeEEEEecCCCEEEECCEEECHHHHH
Confidence              01112334443        45699999999998885 899999999999999999999999999999999998     


Q ss_pred             -------------------------------------------------------eeeeccCcEEEeecCCCCCCchhhH
Q psy12107        298 -------------------------------------------------------PYKKLAGGVKFLETIPRNPAGKVLR  322 (334)
Q Consensus       298 -------------------------------------------------------~~~~~~~~i~~v~~lP~t~~GKi~r  322 (334)
                                                                             +++.|.. |+++++||+|++||++|
T Consensus       472 ~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~-i~~v~~iP~t~~GKv~r  550 (570)
T PRK04319        472 SKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFVKKGLGAHAAPRE-IEFKDKLPKTRSGKIMR  550 (570)
T ss_pred             HHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCCHHHHHHHHHHHHHhcccccCCcE-EEEeCCCCCCCchhhhH
Confidence                                                                   4455666 99999999999999999


Q ss_pred             HHHhhhhc
Q psy12107        323 NELKVFGT  330 (334)
Q Consensus       323 ~~l~~~~~  330 (334)
                      ++||++..
T Consensus       551 ~~L~~~~~  558 (570)
T PRK04319        551 RVLKAWEL  558 (570)
T ss_pred             HHHHHHHh
Confidence            99999854

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=4.1e-47  Score=319.91  Aligned_cols=308  Identities=21%  Similarity=0.317  Sum_probs=255.4

Q ss_pred             HHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhh-cCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHH
Q psy12107          9 EVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLV-TSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVN   87 (334)
Q Consensus         9 ~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~   87 (334)
                      +.+.+.+.++|.++++++.++...    ....+..+ .......+.++.+++++|+..-+.||||+||.|+.+|.++..+
T Consensus       142 ~~ar~~~a~~~tlr~v~v~ge~~~----~~~~~~~~~~~a~~~~~a~~~~~~~vA~fqLSGGTTGtPKLIPRtH~DY~Ys  217 (542)
T COG1021         142 PFARELVAKHPTLRHVIVAGEAEH----PSVLEAALCHPAGLFTPAPPADAGEVAFFQLSGGTTGTPKLIPRTHNDYYYS  217 (542)
T ss_pred             HHHHHHHhhCCcceEEEEccCCCC----cchhhhhhhCccccCCcCCCCCCCceEEEEecCCCCCCCccccccccceeee
Confidence            445557778999999999865431    22233333 2222222345678899999999999999999999999998777


Q ss_pred             hhhhccCccccCCCCCCCCCceEEEecchhhhhHHHH-HHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHH
Q psy12107         88 LEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG-ILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLL  166 (334)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l  166 (334)
                      .......-       ....+.+.++.+|..|.+.+.. +.++.+..|+++|+.+..+++..+.+|++|+||+...+|.+.
T Consensus       218 v~aSaEiC-------~~~~~tvyL~~LP~AHNfplssPG~LGv~~agG~VVla~~psp~~~F~lIerh~Vt~tALVPpla  290 (542)
T COG1021         218 VRASAEIC-------GFDQQTVYLCALPAAHNFPLSSPGALGVFLAGGTVVLAPDPSPELCFPLIERHGVTVTALVPPLA  290 (542)
T ss_pred             eeehhhhh-------CcCccceEEEecccccCCCCCCcchhheeeeccEEEECCCCCHHHHHHHHHHhccceEEeccHHH
Confidence            65555443       2678999999999988876543 367889999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccC---------------
Q psy12107        167 LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA---------------  231 (334)
Q Consensus       167 ~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~---------------  231 (334)
                      ..|++..+....+++|||.+-+||+.+++++.+++...+||   .+-+.|||.|.-...+.-.+.               
T Consensus       291 ~LWlqa~e~~~~~LsSLrllQVGGarl~~~~Arrv~~~lgC---~LQQVFGMAEGLvnyTRLDDp~E~i~~TQGrPlsP~  367 (542)
T COG1021         291 SLWLQAAEWERADLSSLRLLQVGGARLSATLARRVPAVLGC---QLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPD  367 (542)
T ss_pred             HHHHHhhhcccCCchheeEEeecCcccCHHHHhhchhhhCc---hHHHHhhhhhhhhcccccCCchHheeecCCCcCCCc
Confidence            99999988889999999999999999999999999999987   688999999965433311110               


Q ss_pred             ---------CCCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEe
Q psy12107        232 ---------IPEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV  296 (334)
Q Consensus       232 ---------~~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i  296 (334)
                               .+++.+|..|+.      .++|||+.|+.++.+|+.+|+|+|||++++++||++.+.||.||+|+.+|++|
T Consensus       368 DEvrvvD~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~dGyl~V~GR~KDQINRgGEKI  447 (542)
T COG1021         368 DEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKI  447 (542)
T ss_pred             ceeEEecCCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecCCceEEEEeeehhhhccccchh
Confidence                     124456666666      57899999999999999999999999999999999999999999999999999


Q ss_pred             e---------------------------------------------------------eeeeccCcEEEeecCCCCCCch
Q psy12107        297 A---------------------------------------------------------PYKKLAGGVKFLETIPRNPAGK  319 (334)
Q Consensus       297 ~---------------------------------------------------------~~~~~~~~i~~v~~lP~t~~GK  319 (334)
                      .                                                         .+|.|.. |++++.+|.|+.||
T Consensus       448 AAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~~~~~~~qlr~~L~~~GlAa~K~PDr-ie~v~~~P~T~VGK  526 (542)
T COG1021         448 AAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKEPPLRAAQLRRFLRERGLAAFKLPDR-IEFVDSLPLTAVGK  526 (542)
T ss_pred             hHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecCCCCCHHHHHHHHHHcchhhhcCCcc-eeecccCCCccccc
Confidence            9                                                         6777777 99999999999999


Q ss_pred             hhHHHHhhhhcC
Q psy12107        320 VLRNELKVFGTN  331 (334)
Q Consensus       320 i~r~~l~~~~~~  331 (334)
                      |||++||+.+..
T Consensus       527 IdKk~Lr~~l~~  538 (542)
T COG1021         527 IDKKALRRRLAS  538 (542)
T ss_pred             ccHHHHHHHhhh
Confidence            999999988754

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-45  Score=348.18  Aligned_cols=307  Identities=25%  Similarity=0.380  Sum_probs=234.6

Q ss_pred             cchhhHHHHHHhhhCCCCceEEEEcCCCC-CCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcch
Q psy12107          4 IPQLLEVGTKIGATLPNFRGTIVVGGEHD-KSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHN   82 (334)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~   82 (334)
                      +.++.+.+..+...++.++.++....... ...++..+++++.......  .+..++++++++|||||||.||+|+++|+
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~TSGTTG~PKgv~~s~~  230 (549)
T PRK07788        153 DDEFTDLLSALPPDLGRLRAWGGNPDDDEPSGSTDETLDDLIAGSSTAP--LPKPPKPGGIVILTSGTTGTPKGAPRPEP  230 (549)
T ss_pred             CchhHHHHHhhccccccceEEEEecCccccCCcCcccHHHHhcCCCCCC--CCCCCCCCcEEEECCCCCCCCCEEeccCc
Confidence            34444555444444454444443322111 1134567787774222111  22345788999999999999999999999


Q ss_pred             HHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeec
Q psy12107         83 NCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVV  162 (334)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~  162 (334)
                      ++..........+       ....+++++...|++|.+++.. ++.++..|+++++...+++..+++.++++++|+++++
T Consensus       231 ~~~~~~~~~~~~~-------~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~vt~~~~~  302 (549)
T PRK07788        231 SPLAPLAGLLSRV-------PFRAGETTLLPAPMFHATGWAH-LTLAMALGSTVVLRRRFDPEATLEDIAKHKATALVVV  302 (549)
T ss_pred             cHHHHHHHHHhhC-------CCCcCCeEEEccchHHHHHHHH-HHHHHHhCCEEEECCCCCHHHHHHHHHHhCCcEEEEH
Confidence            9987765544433       2567889999999999999876 6778899999999888999999999999999999999


Q ss_pred             hHHHHHHhcCCCC--CccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC--------
Q psy12107        163 PSLLLFLASHPAV--TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI--------  232 (334)
Q Consensus       163 p~~l~~l~~~~~~--~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~--------  232 (334)
                      |+++..|++....  ...++++||.+++||+++++++.+++.+.|+.   .++|.||+||++.+........        
T Consensus       303 P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~---~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG  379 (549)
T PRK07788        303 PVMLSRILDLGPEVLAKYDTSSLKIIFVSGSALSPELATRALEAFGP---VLYNLYGSTEVAFATIATPEDLAEAPGTVG  379 (549)
T ss_pred             HHHHHHHHhCcccccCCCCCCceeEEEEeCCCCCHHHHHHHHHHhCc---cceeccCcchhchhhccChhhhhhcCCCcc
Confidence            9999999887654  45568899999999999999999999999974   6999999999875443221100        


Q ss_pred             ---------------CCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEE
Q psy12107        233 ---------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKV  291 (334)
Q Consensus       233 ---------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~  291 (334)
                                     .+...+..|++      ++.||++++..   .. .+|||+|||++++++||++++.||.||+||+
T Consensus       380 ~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~---~~-~~g~~~TGDl~~~~~~g~l~~~GR~dd~i~~  455 (549)
T PRK07788        380 RPPKGVTVKILDENGNEVPRGVVGRIFVGNGFPFEGYTDGRDK---QI-IDGLLSSGDVGYFDEDGLLFVDGRDDDMIVS  455 (549)
T ss_pred             cCCCCcEEEEECCCcCCCCCCCeEEEEEeCCCccccccCCCcc---cc-cCCceecCceEEEcCCCCEEEeccCcceEEE
Confidence                           01112334444      67899988765   22 4789999999999999999999999999999


Q ss_pred             cCEEee---------------------------------------------------------eeeeccCcEEEeecCCC
Q psy12107        292 KGNQVA---------------------------------------------------------PYKKLAGGVKFLETIPR  314 (334)
Q Consensus       292 ~G~~i~---------------------------------------------------------~~~~~~~~i~~v~~lP~  314 (334)
                      +|++|+                                                         ++++|.. |.++++||+
T Consensus       456 ~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~P~~-i~~v~~lP~  534 (549)
T PRK07788        456 GGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVRDNLARYKVPRD-VVFLDELPR  534 (549)
T ss_pred             CCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCCHHHHHHHHHHhhhcCCCCcE-EEEeCCCCC
Confidence            999998                                                         5556766 999999999


Q ss_pred             CCCchhhHHHHhhh
Q psy12107        315 NPAGKVLRNELKVF  328 (334)
Q Consensus       315 t~~GKi~r~~l~~~  328 (334)
                      |++|||+|++|+++
T Consensus       535 t~~GKi~r~~L~~~  548 (549)
T PRK07788        535 NPTGKVLKRELREM  548 (549)
T ss_pred             CCCcCEeHHHhhcc
Confidence            99999999999864

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=6.1e-45  Score=343.18  Aligned_cols=289  Identities=40%  Similarity=0.655  Sum_probs=234.3

Q ss_pred             ccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecch
Q psy12107         37 IFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPF  116 (334)
Q Consensus        37 ~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~  116 (334)
                      ...+.+++.......+.....++++++++|||||||.||+|+++|+++..+..........   ......+|++++.+|+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~~~---~~~~~~~d~~l~~~pl  233 (537)
T PLN02246        157 CLHFSELTQADENELPEVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENP---NLYFHSDDVILCVLPM  233 (537)
T ss_pred             ceeHHHHhcCCCCCCCCCCCCccCEEEEEeCCCCCCCCceEEEeHHHHHHHHHHHhhcccc---ccCCCCCcEEEEeech
Confidence            4556666532222222234568999999999999999999999999998766543221100   0125788999999999


Q ss_pred             hhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHH
Q psy12107        117 FHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKS  196 (334)
Q Consensus       117 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~  196 (334)
                      +|.+++...++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|++........++++|.+++||++++++
T Consensus       234 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~  313 (537)
T PLN02246        234 FHIYSLNSVLLCGLRVGAAILIMPKFEIGALLELIQRHKVTIAPFVPPIVLAIAKSPVVEKYDLSSIRMVLSGAAPLGKE  313 (537)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHhCceEEEcchHHHHHHhcCccccccCccceeEEEEecCcCCHH
Confidence            99999877778889999999999999999999999999999999999999999887665566788999999999999999


Q ss_pred             HHHHHHHHhccCCCceeeccCCCCCCCccccccc----------------------------CCCCccccCccc------
Q psy12107        197 LIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF----------------------------AIPEAKLGSTGQ------  242 (334)
Q Consensus       197 ~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~----------------------------~~~~~~~~~~G~------  242 (334)
                      +.+.+.+.|+  +..+++.||+||++.+++.+..                            ...+...+..|+      
T Consensus       314 ~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~  391 (537)
T PLN02246        314 LEDAFRAKLP--NAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGP  391 (537)
T ss_pred             HHHHHHHHcC--CCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECC
Confidence            9999999997  5579999999999865432110                            000111223333      


Q ss_pred             cccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee-------------------------
Q psy12107        243 LVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-------------------------  297 (334)
Q Consensus       243 ~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-------------------------  297 (334)
                      .++.||+++++.+...+..++||+|||+++++++|+++++||.+|+||.+|++|+                         
T Consensus       392 ~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~  471 (537)
T PLN02246        392 QIMKGYLNDPEATANTIDKDGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDE  471 (537)
T ss_pred             chhccccCCchhhhhcccCCCCeeecceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCc
Confidence            3788999999999998888999999999999999999999999999999999999                         


Q ss_pred             --------------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 --------------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 --------------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                                      +++.|.. +.++++||+|++||++|++|++.+.+
T Consensus       472 ~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~-i~~~~~~P~t~~GKi~r~~L~~~~~~  536 (537)
T PLN02246        472 VAGEVPVAFVVRSNGSEITEDEIKQFVAKQVVFYKRIHK-VFFVDSIPKAPSGKILRKDLRAKLAA  536 (537)
T ss_pred             cCCceeEEEEEeCCCCCCCHHHHHHHHHhhCcCccccce-EEEeccCCCCCcchhhHHHHHHHHhc
Confidence                                            4555666 99999999999999999999998764

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=7.9e-45  Score=343.09  Aligned_cols=307  Identities=26%  Similarity=0.412  Sum_probs=244.1

Q ss_pred             HHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCC-----C---CCCCCCCCCCCCEEEEecCCCCCCCchhhhhc
Q psy12107          9 EVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQ-----P---PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLS   80 (334)
Q Consensus         9 ~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~-----~---~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t   80 (334)
                      +.+.++...++.++.+++++..     +..+|.+++...     .   .........++++++++|||||||.||+|+++
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s  218 (547)
T PRK13295        144 AMARRLRPELPALRHVVVVGGD-----GADSFEALLITPAWEQEPDAPAILARLRPGPDDVTQLIYTSGTTGEPKGVMHT  218 (547)
T ss_pred             HHHHHHhhhCCCcceEEEecCC-----CccCHHHHhhCCccccccccccccccCCCCCcceeEEEeCCCCCCCCCEEEec
Confidence            3444555567777777777543     234555554211     0   00111234678999999999999999999999


Q ss_pred             chHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEe
Q psy12107         81 HNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILF  160 (334)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~  160 (334)
                      |+++..+.......+       ...+.+++++.+|++|..++...++.++..|+++++.+.+++..+++.++++++|++.
T Consensus       219 ~~~l~~~~~~~~~~~-------~~~~~~~~l~~~p~~h~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~l~~~~vt~~~  291 (547)
T PRK13295        219 ANTLMANIVPYAERL-------GLGADDVILMASPMAHQTGFMYGLMMPVMLGATAVLQDIWDPARAAELIRTEGVTFTM  291 (547)
T ss_pred             cHHHHHHHHHHHHHh-------CCCCCCeEEEecCchhhhhHHHHHHHHHHcCCeEEeCCCCCHHHHHHHHHHcCCcEEE
Confidence            999987766544433       2567899999999999999887788999999999999889999999999999999999


Q ss_pred             echHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC--------
Q psy12107        161 VVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI--------  232 (334)
Q Consensus       161 ~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~--------  232 (334)
                      ++|+++..|..........+++||.+++||+++++++.+++.+.++.   ++++.||+||++.+.+.+....        
T Consensus       292 ~~p~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~---~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~  368 (547)
T PRK13295        292 ASTPFLTDLTRAVKESGRPVSSLRTFLCAGAPIPGALVERARAALGA---KIVSAWGMTENGAVTLTKLDDPDERASTTD  368 (547)
T ss_pred             ecHHHHHHHHhcccccCCCcccceEEEEecCCCCHHHHHHHHHHhCC---CeEEeccCCCCCCeeeccCCCcchhccCcc
Confidence            99999999988766566778899999999999999999999999864   7999999999986554322110        


Q ss_pred             ----------------CCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEE
Q psy12107        233 ----------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIK  290 (334)
Q Consensus       233 ----------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~  290 (334)
                                      .+...+..|++      ++.||+++++.+...  .+|||+|||+++++++|++++.||.+|+||
T Consensus       369 G~~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~--~~g~~~TGD~~~~~~~g~l~~~gR~~~~i~  446 (547)
T PRK13295        369 GCPLPGVEVRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTD--ADGWFDTGDLARIDADGYIRISGRSKDVII  446 (547)
T ss_pred             ccccCCcEEEEECCCCCCCCCCCCCeEEEEcCcccccccCCccccccC--CCCCeecceEEEEcCCceEEEEeccCCeEE
Confidence                            00112333433      688999999988765  478999999999999999999999999999


Q ss_pred             EcCEEee----------------------------------------------------------eeeeccCcEEEeecC
Q psy12107        291 VKGNQVA----------------------------------------------------------PYKKLAGGVKFLETI  312 (334)
Q Consensus       291 ~~G~~i~----------------------------------------------------------~~~~~~~~i~~v~~l  312 (334)
                      .+|++|+                                                          +++.|.. +.++++|
T Consensus       447 ~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~-i~~v~~l  525 (547)
T PRK13295        447 RGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKAQKVAKQYIPER-LVVRDAL  525 (547)
T ss_pred             ECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCCHHHHHHHHHhccCccccCCcE-EEEeccC
Confidence            9999998                                                          4445665 9999999


Q ss_pred             CCCCCchhhHHHHhhhhcCCC
Q psy12107        313 PRNPAGKVLRNELKVFGTNPK  333 (334)
Q Consensus       313 P~t~~GKi~r~~l~~~~~~~~  333 (334)
                      |+|++||++|++|+++..+..
T Consensus       526 P~t~sgK~~r~~L~~~~~~~~  546 (547)
T PRK13295        526 PRTPSGKIQKFRLREMLRGED  546 (547)
T ss_pred             CCCCCccccHHHHHHHHhcCC
Confidence            999999999999999886653

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2e-45  Score=353.13  Aligned_cols=233  Identities=24%  Similarity=0.391  Sum_probs=186.1

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ..+++|+++|+|||||||.||||++||+++.+++.........     .....+++++.+|++|+++... .+.++..|+
T Consensus       300 ~~~~dd~a~IiYTSGTTG~PKGVmlTH~nl~~~~~~~~~~~~~-----~~~~~d~~ls~LPL~Hi~~~~~-~~~~l~~G~  373 (746)
T PTZ00342        300 NEDPDFITSIVYTSGTSGKPKGVMLSNKNLYNTVVPLCKHSIF-----KKYNPKTHLSYLPISHIYERVI-AYLSFMLGG  373 (746)
T ss_pred             CCCccceEEEEEcCCCCCCCCEEEEccHHHHHHHHHHhhcccc-----cCCCCCeEEEeCcHHHHHHHHH-HHHHHHcCC
Confidence            4568999999999999999999999999999887654322110     0224578999999999999876 567789999


Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcC--------CCCCc-----------------------------
Q psy12107        135 HMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASH--------PAVTP-----------------------------  177 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~--------~~~~~-----------------------------  177 (334)
                      ++++.+. ++..+++.|++++||+++++|.++..|.+.        +....                             
T Consensus       374 ~i~~~~~-~~~~l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~  452 (746)
T PTZ00342        374 TINIWSK-DINYFSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHIS  452 (746)
T ss_pred             EEEEeCC-CHHHHHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHH
Confidence            9998765 899999999999999999999999988642        10000                             


Q ss_pred             -----cccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC--------C-----C-----
Q psy12107        178 -----EHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI--------P-----E-----  234 (334)
Q Consensus       178 -----~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~--------~-----~-----  234 (334)
                           ...++||.+++||+++++++.+++.+.+|.   +++++||+||+++..+......        +     +     
T Consensus       453 ~kir~~lg~~lr~~~sGGapl~~~~~~~~~~~~g~---~i~~gYGlTEt~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d  529 (746)
T PTZ00342        453 SKIKDKVNPNLEVILNGGGKLSPKIAEELSVLLNV---NYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRT  529 (746)
T ss_pred             HHHHHhhCCCeEEEEEcCCCCCHHHHHHHHHhcCC---CEEEeeccCcccceeeeccCCCCCcccccCcCCCcEEEEEec
Confidence                 002589999999999999999999998864   7999999999875443221110        0     0     


Q ss_pred             ------ccccCccc------cccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEE-cCEEee
Q psy12107        235 ------AKLGSTGQ------LVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKV-KGNQVA  297 (334)
Q Consensus       235 ------~~~~~~G~------~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~i~  297 (334)
                            ......|+      .++.|||++|+.|+++|+.+|||+|||+|++|+||+++++||+||+||+ +|++|+
T Consensus       530 ~~~~~~~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~  605 (746)
T PTZ00342        530 WETYKATDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIE  605 (746)
T ss_pred             ccccccCCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEc
Confidence                  00011233      3789999999999999988999999999999999999999999999997 699999

>KOG1256|consensus

Probab=100.00  E-value=3.6e-46  Score=339.07  Aligned_cols=289  Identities=28%  Similarity=0.439  Sum_probs=223.6

Q ss_pred             CCCcchhhHHHHHHhhh--CCCCceEEEEcCCCCC----C----CCccchhhhhc-CCCCCCCC-CCCCCCCEEEEecCC
Q psy12107          1 MCNIPQLLEVGTKIGAT--LPNFRGTIVVGGEHDK----S----KNIFGFKQLVT-SQPPDFQL-PKISPNDLAMLPYSS   68 (334)
Q Consensus         1 ~~~~~~~~~~~~~~~~~--~~~~~~ii~~~~~~~~----~----~~~~~~~~ll~-~~~~~~~~-~~~~~~~~a~i~~TS   68 (334)
                      ||++++.++.+.+....  +|.+|.||++++..+.    .    -.+++|+++++ .......+ .+..|+|.+.|+|||
T Consensus       185 ~vd~~~k~~~ll~~~~~~~~~~LK~iI~~~~~~~~~~~~~~~~gv~v~S~~e~~~lG~~~~~~~~~~p~p~d~atI~yTS  264 (691)
T KOG1256|consen  185 FVDNAKKAEKLLEIKENDSLPSLKAIIQLDEPSDELKEKAENNGVEVYSWDEFEELGKKNQRKPRVPPKPDDLATICYTS  264 (691)
T ss_pred             EEeCHHHHHHHHhhcccccCccceeEEEecCCchhhhhhhhcCCeEEEEHHHHHhhcccccCCCCCCCCccceEEEEEcC
Confidence            45667888888888774  8999999999875422    2    23789999983 21111222 367799999999999


Q ss_pred             CCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHH
Q psy12107         69 GTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYI  148 (334)
Q Consensus        69 GTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~  148 (334)
                      ||||.||||++||+|+.+.............. .....+|+.++.+|+.|++..... ...+..|+++.+... |+..+.
T Consensus       265 GTTG~PKGVMLTH~Niv~~v~~~~~~~~~~~~-~~~~~~dv~lSyLPLAHi~er~~~-~~~~~~G~~IgF~~g-D~~~l~  341 (691)
T KOG1256|consen  265 GTTGNPKGVMLTHRNIVSDVAGIFFLSAAENA-KATVGDDVYLSYLPLAHIFERVVE-LYTFYIGAKIGFARG-DILKLT  341 (691)
T ss_pred             CCCCCCceEEEeccceeehhhhhhhhhhcccc-cccccCceEEEeCcHHHHHHHHHH-HhHhhcccEEEEecC-ChHHHH
Confidence            99999999999999998855432211111000 012347999999999999998874 455588999988774 899999


Q ss_pred             HHHHHcCCeEEeechHHHHHHhcC-------C-------------------CCCcccc-------------------ccc
Q psy12107        149 ECVVKYKPTILFVVPSLLLFLASH-------P-------------------AVTPEHL-------------------ASI  183 (334)
Q Consensus       149 ~~i~~~~~t~l~~~p~~l~~l~~~-------~-------------------~~~~~~~-------------------~~l  183 (334)
                      +.|+..+||++.++|.+|..+.+.       .                   -......                   ..+
T Consensus       342 ~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg~v  421 (691)
T KOG1256|consen  342 DDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGGNV  421 (691)
T ss_pred             HHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcCce
Confidence            999999999999999998887421       0                   0000000                   278


Q ss_pred             eeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCCCCccccCcccc--------------------
Q psy12107        184 REVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQL--------------------  243 (334)
Q Consensus       184 r~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~G~~--------------------  243 (334)
                      |.+++|++|+++++...++..+++   +++++||+|||++.++....++.  ..+++|.|                    
T Consensus       422 r~~~sGaAPls~ev~~F~r~~~g~---~v~eGYGlTEts~g~~~~~~~d~--~lgsvG~p~p~~~vKL~dvpe~ny~a~~  496 (691)
T KOG1256|consen  422 RLIISGAAPLSPEVLTFFRAALGC---RVLEGYGLTETSAGTTLTLPGDN--VLGSVGPPVPGNEVKLVDVPEMNYDADG  496 (691)
T ss_pred             eEEEecCCCCCHHHHHHHHHhcCc---eeeecccccccCCceEeccCCCC--CCCCcCCcccCceEEEechHHhCcCcCC
Confidence            999999999999999999999865   89999999999854444333332  44555544                    


Q ss_pred             -----------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEE-cCEEee
Q psy12107        244 -----------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKV-KGNQVA  297 (334)
Q Consensus       244 -----------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~i~  297 (334)
                                 +|.||+++|+.|+++++.|||+||||+|+|+++|.++++||++++||+ +|++|.
T Consensus       497 ~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVa  562 (691)
T KOG1256|consen  497 SKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVA  562 (691)
T ss_pred             CcceEEEecchhceeccCChHHHhhhhccccccccccceeECCCccEEEEecccceEEcCCCCccC
Confidence                       899999999999999999999999999999999999999999999999 599999

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=3.6e-45  Score=346.35  Aligned_cols=233  Identities=27%  Similarity=0.487  Sum_probs=193.7

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++++|||||||.||+|+++|+++..+.......+       ...++|+++...|++|.+++.. ++.++..|+
T Consensus       168 ~~~~~~~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-------~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~  239 (563)
T PLN02860        168 AWAPDDAVLICFTSGTTGRPKGVTISHSALIVQSLAKIAIV-------GYGEDDVYLHTAPLCHIGGLSS-ALAMLMVGA  239 (563)
T ss_pred             CCCCCCeEEEEecCCCCCCCceEEeehHHHHHHHHHHHhhc-------CCCCCCEEEEecCchhhccHHH-HHHHHHcCc
Confidence            34678999999999999999999999999987655443322       2567899999999999999876 678899999


Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCC--CccccccceeeeecCCCCCHHHHHHHHHHhccCCCce
Q psy12107        135 HMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV--TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITI  212 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~--~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i  212 (334)
                      ++++.+.+++..+++.|+++++|+++++|+++..|.+....  ....+++||.+++||+++++++.+.+.+.|+  ++++
T Consensus       240 ~~v~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~--~~~~  317 (563)
T PLN02860        240 CHVLLPKFDAKAALQAIKQHNVTSMITVPAMMADLISLTRKSMTWKVFPSVRKILNGGGSLSSRLLPDAKKLFP--NAKL  317 (563)
T ss_pred             eEEecCCCCHHHHHHHHHHhCCeeEEeChHHHHHHHHhhhhhhccccccceeEEEeCCCcCCHHHHHHHHHhcC--CCce
Confidence            99999899999999999999999999999999999875432  2346779999999999999999999999996  5689


Q ss_pred             eeccCCCCCCCcccccccCC-------------------------------C----Cc-----cccCcccc------ccc
Q psy12107        213 RQGYGMTETSPCTLYTRFAI-------------------------------P----EA-----KLGSTGQL------VML  246 (334)
Q Consensus       213 ~~~YG~tE~g~~~~~~~~~~-------------------------------~----~~-----~~~~~G~~------~~~  246 (334)
                      ++.||+||++..++......                               +    +.     ..+..|++      ++.
T Consensus       318 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~~g~~Gel~v~g~~~~~  397 (563)
T PLN02860        318 FSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVML  397 (563)
T ss_pred             ecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCCCCceeEEEEecCcccc
Confidence            99999999875433211000                               0    00     01233333      688


Q ss_pred             cccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee
Q psy12107        247 GYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA  297 (334)
Q Consensus       247 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~  297 (334)
                      ||+++++.+...+..+|||+|||+|++++||+++++||.+|+||++|++|+
T Consensus       398 GY~~~~~~t~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~  448 (563)
T PLN02860        398 GYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVY  448 (563)
T ss_pred             cccCCccccchhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEcc
Confidence            999999999999988999999999999999999999999999999999999

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.4e-45  Score=349.87  Aligned_cols=266  Identities=23%  Similarity=0.357  Sum_probs=212.9

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhh-ccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHh
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQC-VHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMY  132 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  132 (334)
                      ..++++|+++|+|||||||.||||+++|++.+...... ....       ....++++++..|++|+.+... ++.++..
T Consensus       249 ~~~~~~d~~~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~~~~~-------~~~~~d~~~~~~~~~w~~~~~~-~~~~l~~  320 (647)
T PTZ00237        249 VPVESSHPLYILYTSGTTGNSKAVVRSNGPHLVGLKYYWRSII-------EKDIPTVVFSHSSIGWVSFHGF-LYGSLSL  320 (647)
T ss_pred             eeeCCCCcEEEEEcCCCCCCCCeEEEcCcHHHHHHHHHHHHhc-------CCCCCcEEEEcCCCceEeeHHH-HHHHHhC
Confidence            45678999999999999999999999999843333222 1111       2456789999999999876544 7888999


Q ss_pred             CcEEEEcCC--CC----HHHHHHHHHHcCCeEEeechHHHHHHhcCCC-----CCccccccceeeeecCCCCCHHHHHHH
Q psy12107        133 GMHMITIPK--FT----PETYIECVVKYKPTILFVVPSLLLFLASHPA-----VTPEHLASIREVTCGAAPATKSLIDKF  201 (334)
Q Consensus       133 G~~~~~~~~--~~----~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~-----~~~~~~~~lr~v~~~G~~l~~~~~~~~  201 (334)
                      |+++++.+.  +.    +..+++.|+++++|+++++|++++.|.+...     ....++++||.++++|+++++++.+++
T Consensus       321 G~t~v~~~~~~~~p~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~Lr~i~~~G~~l~~~~~~~~  400 (647)
T PTZ00237        321 GNTFVMFEGGIIKNKHIEDDLWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIRSKYDLSNLKEIWCGGEVIEESIPEYI  400 (647)
T ss_pred             CcEEEEeCCCCCCCCCchHHHHHHHHHhCeEEEEeCHHHHHHHHhhCccccccccccCcchheEEEecCccCCHHHHHHH
Confidence            999998763  12    6889999999999999999999999987532     134578899999999999999999999


Q ss_pred             HHHhccCCCceeeccCCCCCCCcccccccCC-----------------------CCccccCcccc---------cccccc
Q psy12107        202 KQKVQREDITIRQGYGMTETSPCTLYTRFAI-----------------------PEAKLGSTGQL---------VMLGYL  249 (334)
Q Consensus       202 ~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-----------------------~~~~~~~~G~~---------~~~gy~  249 (334)
                      ++.++.   ++++.||+||++.++.......                       .+...+..|++         ++.|||
T Consensus       401 ~~~~g~---~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~ge~GEl~v~~p~~p~~~~gy~  477 (647)
T PTZ00237        401 ENKLKI---KSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKELNVNEIGEVAFKLPMPPSFATTFY  477 (647)
T ss_pred             HHhcCC---CEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEECCCCCCCCCCCceEEEEeccCCchhhCcee
Confidence            999864   7999999999986443221100                       01112344443         467999


Q ss_pred             CCccccccccCC-CCceecCceEEEecCCcEEEEccCCceEEEcCEEee-------------------------------
Q psy12107        250 KNEEATKETVDS-EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-------------------------------  297 (334)
Q Consensus       250 ~~~~~~~~~~~~-~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-------------------------------  297 (334)
                      ++++.+.+.|.. +|||+|||+|++|+||+++++||+||+||++|++|+                               
T Consensus       478 ~~~~~~~~~f~~~~g~~~TGDlg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~  557 (647)
T PTZ00237        478 KNDEKFKQLFSKFPGYYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVP  557 (647)
T ss_pred             CCHHHHHHHHhCCCCEEECCcEEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEE
Confidence            999998877743 789999999999999999999999999999999999                               


Q ss_pred             ---------------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 ---------------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 ---------------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                                       ++++|+. |+++++||+|++|||+|+.||+++.+
T Consensus       558 ~a~Vv~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~P~~-i~~v~~lP~T~sGKi~R~~Lr~~~~~  623 (647)
T PTZ00237        558 IGLLVLKQDQSNQSIDLNKLKNEINNIITQDIESLAVLRK-IIIVNQLPKTKTGKIPRQIISKFLND  623 (647)
T ss_pred             EEEEEeccCccccCCCHHHHHHHHHHHHHhhcCccccCcE-EEEcCCCCCCCCccEeHHHHHHHHcC
Confidence                                             3445555 99999999999999999999998754

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=1.3e-44  Score=346.34  Aligned_cols=312  Identities=19%  Similarity=0.238  Sum_probs=232.7

Q ss_pred             HHHHHHhhhC-CCCceEEEEcCCCCC----CCCccchhhhhcCCC-CCCCCCCCCCCCEEEEecCCCCCCCchhhhhcch
Q psy12107          9 EVGTKIGATL-PNFRGTIVVGGEHDK----SKNIFGFKQLVTSQP-PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHN   82 (334)
Q Consensus         9 ~~~~~~~~~~-~~~~~ii~~~~~~~~----~~~~~~~~~ll~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~   82 (334)
                      +.+.+++... +..+++++++.....    ......|++++.... ...+...+.++++++|+|||||||.||||+++|+
T Consensus       176 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh~  255 (628)
T TIGR02316       176 PLLDAAIAEAQHPPPHVLLVDRGLAPMRLIPGRDVDYAALRTQHEDAQVPVEWLESNEPSYILYTSGTTGKPKGVQRDVG  255 (628)
T ss_pred             HHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCccccHHHHhhccccCCCCceecCCCCcEEEEECCCCCCCCceEEECCc
Confidence            3344443333 345677777642110    112356777663221 1222233578999999999999999999999999


Q ss_pred             HHHHHhhhh-ccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC----CCHHHHHHHHHHcCCe
Q psy12107         83 NCAVNLEQC-VHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK----FTPETYIECVVKYKPT  157 (334)
Q Consensus        83 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~----~~~~~~~~~i~~~~~t  157 (334)
                      ++..+.... ...+       ...++|++++..|++|+.+....++.++..|+++++.+.    +++..+++.|+++++|
T Consensus       256 ~~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt  328 (628)
T TIGR02316       256 GYAVALALSMWAIF-------GIRAGQVMFSASDVGWVVGHSYIVYAPLLAGAATVLYEGLPTNPDPGVWWSIVERYGVR  328 (628)
T ss_pred             HHHHHHHHHHHHhc-------CCCCCcEEEEcCCCCeeehhhHHHHHHHhccceEEEeCCCCCCCCHHHHHHHHHHhCCe
Confidence            976443222 2222       256789999999999999877668899999999998763    5789999999999999


Q ss_pred             EEeechHHHHHHhcCCC--CCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccC----
Q psy12107        158 ILFVVPSLLLFLASHPA--VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA----  231 (334)
Q Consensus       158 ~l~~~p~~l~~l~~~~~--~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~----  231 (334)
                      +++++|++++.|.+...  ....++++||.+++||+++++++.+++.+.++.   .+++.||+||++..++.....    
T Consensus       329 ~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~---~~~~~yG~TE~~~~~~~~~~~~~~~  405 (628)
T TIGR02316       329 TMFSAPTAIRVLKKQDAAWLRKHDLSSLHWLFLAGEPLDEPTAHWITDGLGK---PVIDNYWQTETGWPVLAIMPGLDLK  405 (628)
T ss_pred             EEEeCHHHHHHHHhcCCcccccCCccceeEEEEecCCCCHHHHHHHHHHhCC---CEEecccccccCceeecCCCCCCcC
Confidence            99999999999987543  234678899999999999999999999998864   799999999998432211000    


Q ss_pred             -----------------------CCCccccCcccc---------ccccccCCcccccccc---CCCCceecCceEEEecC
Q psy12107        232 -----------------------IPEAKLGSTGQL---------VMLGYLKNEEATKETV---DSEGWLHTGDVAYYDED  276 (334)
Q Consensus       232 -----------------------~~~~~~~~~G~~---------~~~gy~~~~~~~~~~~---~~~~~~~TGD~~~~~~d  276 (334)
                                             ..+...+..|++         .+.+|+++++.+...+   .+++||+|||+|++|+|
T Consensus       406 ~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~d  485 (628)
T TIGR02316       406 PVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDED  485 (628)
T ss_pred             CCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcCC
Confidence                                   000112333433         3577888887766543   24789999999999999


Q ss_pred             CcEEEEccCCceEEEcCEEee-----------------------------------------------------------
Q psy12107        277 GYFYIVDRTKELIKVKGNQVA-----------------------------------------------------------  297 (334)
Q Consensus       277 g~~~~~GR~~d~i~~~G~~i~-----------------------------------------------------------  297 (334)
                      |+++++||.||+||++|++|+                                                           
T Consensus       486 G~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~  565 (628)
T TIGR02316       486 GYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDAHDPHAVETGMMDC  565 (628)
T ss_pred             CcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccccchHHHHHHHHHH
Confidence            999999999999999999999                                                           


Q ss_pred             ------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 ------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 ------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                            +++.|.. |+++++||+|++|||+|+.|++...+
T Consensus       566 ~~~~L~~~~~P~~-v~~v~~lP~t~sGKi~r~~L~~~~~~  604 (628)
T TIGR02316       566 VVRQLGAVARPAR-VYFVAALPKTRSGKLLRRSIQALAEG  604 (628)
T ss_pred             HHHhcCCCcCCCE-EEEcCCCCCCCchHHHHHHHHHHHcC
Confidence                  3345555 99999999999999999999988654

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=100.00  E-value=1.6e-45  Score=338.92  Aligned_cols=230  Identities=37%  Similarity=0.548  Sum_probs=193.8

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      .+..++|+|.|+|||||||.||||++||+|+++++........      ...++|+.++++|+.|++...+.....+..|
T Consensus       186 ~~~~~dDlatiiYTSGTTG~PKGVmLth~N~~~~v~~~~~~~~------~~~~~d~~LsfLPlaHi~Er~~~~~~~~~~g  259 (613)
T COG1022         186 APPKPDDLATIIYTSGTTGTPKGVMLTHRNLLAQVAGIDEVLP------PIGPGDRVLSFLPLAHIFERAFEGGLALYGG  259 (613)
T ss_pred             CCCCccceEEEEEcCCCCCCCceEEEehHHHHHHHHHHHhhCC------CCCCCcEEEEeCcHHHHHHHHHHHHHHhhcc
Confidence            3567899999999999999999999999999999988877653      1679999999999999999876444455555


Q ss_pred             cEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcC--------CCCC-----------------------------
Q psy12107        134 MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASH--------PAVT-----------------------------  176 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~--------~~~~-----------------------------  176 (334)
                      .++..  ..+++.+++.+++++||++.++|.+++.+.+.        ....                             
T Consensus       260 ~~~~~--~~~~~~~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~  337 (613)
T COG1022         260 VTVLF--KEDPRTLLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLL  337 (613)
T ss_pred             eEEEe--cCCHHHHHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhh
Confidence            55554  34899999999999999999999998886421        0000                             


Q ss_pred             ----------cccc-ccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCCCCccccCcccc--
Q psy12107        177 ----------PEHL-ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQL--  243 (334)
Q Consensus       177 ----------~~~~-~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~G~~--  243 (334)
                                ...+ .++|.+++||+++++++...++..    ++++.++||+||++++++.++....  ..+++|.|  
T Consensus       338 ~~d~LVf~Kir~~lGgri~~~~sGGa~l~~~~~~f~~~l----Gi~i~eGYGlTEts~~~~v~~~~~~--~~gtvG~p~p  411 (613)
T COG1022         338 VADRLVFRKIRDALGGRIRYALSGGAPLSPELLHFFRSL----GIPILEGYGLTETSAVVSVNPPDRF--VLGTVGKPLP  411 (613)
T ss_pred             hhhHHHHHHHHHHhCCcEEEEEecCCcCCHHHHHHHHHc----CCCeEEEecccccccceEEccccCc--ccCCcCCcCC
Confidence                      0011 278999999999999999999876    5689999999999988887765544  56666665  


Q ss_pred             ------------------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEE-cCEEee
Q psy12107        244 ------------------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKV-KGNQVA  297 (334)
Q Consensus       244 ------------------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~i~  297 (334)
                                        +|.|||++|++|+++|+.||||+|||+|.+|++|++.++||++|+|++ +|++|.
T Consensus       412 ~~evKI~d~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIa  484 (613)
T COG1022         412 GIEVKIADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIA  484 (613)
T ss_pred             CceEEEccCceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeecccceEECCCCcccC
Confidence                              899999999999999999999999999999999999999999999999 699999

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=5.6e-44  Score=334.99  Aligned_cols=311  Identities=32%  Similarity=0.598  Sum_probs=247.2

Q ss_pred             hHHHHHHhhhCCCCceEEEEcCCCCC--CCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHH
Q psy12107          8 LEVGTKIGATLPNFRGTIVVGGEHDK--SKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCA   85 (334)
Q Consensus         8 ~~~~~~~~~~~~~~~~ii~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~   85 (334)
                      ...+..+...++.++.+++.......  .....+|++++.......+.....++++++++|||||||.||+|.++|.++.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~  192 (513)
T PRK07656        113 LGVDYSATTRLPALEHVVICETEEDDPHTEKMKTFTDFLAAGDPAERAPEVDPDDVADILFTSGTTGRPKGAMLTHRQLL  192 (513)
T ss_pred             HHHHHHHHhccCCccEEEEEcCcccccCccccccHHHHHhcCCCCCCcCCCCCCceEEEEeCCCCCCCCCEEEEecHHHH
Confidence            33444444556666777666543221  1123567777643222122345678999999999999999999999999998


Q ss_pred             HHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeechHH
Q psy12107         86 VNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL  165 (334)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~  165 (334)
                      .........+       ....++++++..|++|.+++...++.++..|+++++.+.++++.+++.|+++++|++.++|++
T Consensus       193 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~  265 (513)
T PRK07656        193 SNAADWAEYL-------GLTEGDRYLAANPFFHVFGYKAGVNAPLMRGATILPLPVFDPDEVFRLIETERITVLPGPPTM  265 (513)
T ss_pred             HHHHHHHHhh-------CCCCCCeEEEccchHHHHHHHHHHHHHHHcCceEEecCcCCHHHHHHHHHHhCCeEEechHHH
Confidence            7776554443       266889999999999999988878899999999999888899999999999999999999999


Q ss_pred             HHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCCC------------
Q psy12107        166 LLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP------------  233 (334)
Q Consensus       166 l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~------------  233 (334)
                      +..|.+........++++|.+++||+++++++.+.+.+.++.  ..+++.||+||++++...+.....            
T Consensus       266 ~~~l~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~--~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~  343 (513)
T PRK07656        266 YNSLLQHPDRSAEDLSSLRLAVTGAASMPVALLERFESELGV--DIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAI  343 (513)
T ss_pred             HHHHHcCCCcCCCCccceeeEEecCCCCCHHHHHHHHHHcCC--CceEeEEccccCCCceeecCccccccccCCCccccC
Confidence            999998877666688899999999999999999999999973  269999999999876654332110            


Q ss_pred             -------------CccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCE
Q psy12107        234 -------------EAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGN  294 (334)
Q Consensus       234 -------------~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~  294 (334)
                                   ....+..|++      ++.||++++..+...+..++||+|||+++++++|.++++||.+|+|+++|.
T Consensus       344 ~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~~g~~~~~GR~~d~i~~~G~  423 (513)
T PRK07656        344 AGVENKIVNELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGGF  423 (513)
T ss_pred             CCcEEEEECCCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcCCeeEEEEecccceEEeCCE
Confidence                         0111233433      678999999988888877999999999999999999999999999999999


Q ss_pred             Eee---------------------------------------------------------eeeeccCcEEEeecCCCCCC
Q psy12107        295 QVA---------------------------------------------------------PYKKLAGGVKFLETIPRNPA  317 (334)
Q Consensus       295 ~i~---------------------------------------------------------~~~~~~~~i~~v~~lP~t~~  317 (334)
                      +++                                                         +++.|.. ++++++||+|++
T Consensus       424 ~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~-i~~v~~iP~t~~  502 (513)
T PRK07656        424 NVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIAYCREHLAKYKVPRS-IEFLDELPKNAT  502 (513)
T ss_pred             EeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCCE-EEEecCCCCCCc
Confidence            998                                                         3345555 999999999999


Q ss_pred             chhhHHHHhhh
Q psy12107        318 GKVLRNELKVF  328 (334)
Q Consensus       318 GKi~r~~l~~~  328 (334)
                      ||++|++|+++
T Consensus       503 gK~~r~~l~~~  513 (513)
T PRK07656        503 GKVLKRALREK  513 (513)
T ss_pred             cceeHHHHhcC
Confidence            99999999863

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.1e-43  Score=335.06  Aligned_cols=313  Identities=30%  Similarity=0.555  Sum_probs=243.2

Q ss_pred             hhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHH
Q psy12107          7 LLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAV   86 (334)
Q Consensus         7 ~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~   86 (334)
                      ..+.+.+.....+..+.++++++..  ..+..++++++.......+...+..+++++++|||||||.||+|.++|+++..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~  201 (542)
T PRK07786        124 LAPVATAVRDIVPLLSTVVVAGGSS--DDSVLGYEDLLAEAGPAHAPVDIPNDSPALIMYTSGTTGRPKGAVLTHANLTG  201 (542)
T ss_pred             hHHHHHHhhhccCccceEEEecCCC--cccccCHHHHhhccCCCCCCCCCCCCCeEEEEeCCCCCccchhhhhhHHHHHH
Confidence            3344444444556677777766432  12456788877432222223355678999999999999999999999999987


Q ss_pred             HhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcC--CCCHHHHHHHHHHcCCeEEeechH
Q psy12107         87 NLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP--KFTPETYIECVVKYKPTILFVVPS  164 (334)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~  164 (334)
                      +.........      .....+++++..|++|.+++.. ++.++..|+++++.+  .+++..+++.|+++++|+++++|+
T Consensus       202 ~~~~~~~~~~------~~~~~~~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~~t~~~~~P~  274 (542)
T PRK07786        202 QAMTCLRTNG------ADINSDVGFVGVPLFHIAGIGS-MLPGLLLGAPTVIYPLGAFDPGQLLDVLEAEKVTGIFLVPA  274 (542)
T ss_pred             HHHHHHHhcC------CCCCCceEEEecchHHHHHHHH-HHHHHHccCEEEEccCCCcCHHHHHHHHHHcCCeEEEehHH
Confidence            7665443321      0246789999999999998865 788899999998865  579999999999999999999999


Q ss_pred             HHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC------------
Q psy12107        165 LLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI------------  232 (334)
Q Consensus       165 ~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~------------  232 (334)
                      ++..|+.........+ ++|.+++||+++++++.+.+.+.|+  +.++++.||+||++.+.+......            
T Consensus       275 ~l~~l~~~~~~~~~~~-~lr~i~~gg~~~~~~~~~~~~~~~~--~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~  351 (542)
T PRK07786        275 QWQAVCAEQQARPRDL-ALRVLSWGAAPASDTLLRQMAATFP--EAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVI  351 (542)
T ss_pred             HHHHHHhCcccCccCc-ceEEEEECCCCCCHHHHHHHHHHcC--CCeEEeeecccccccceEecCcccccccCCCccccC
Confidence            9999987655333333 6999999999999999999999996  568999999999986544221100            


Q ss_pred             ------------CCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCE
Q psy12107        233 ------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGN  294 (334)
Q Consensus       233 ------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~  294 (334)
                                  .+...+..|++      +++||+++++.+...| .++||+|||+++++++|.++++||.+|+|+++|.
T Consensus       352 ~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f-~~~~~~TGDl~~~~~~g~~~i~GR~~d~i~~~G~  430 (542)
T PRK07786        352 PTVAARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAF-AGGWFHSGDLVRQDEEGYVWVVDRKKDMIISGGE  430 (542)
T ss_pred             CCceEEEECCCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHh-hCCcccccceEEEcCCceEEEEecccceEEeCCE
Confidence                        01122333443      6899999999998888 5899999999999999999999999999999999


Q ss_pred             Eee----------------------------------------------------------eeeeccCcEEEeecCCCCC
Q psy12107        295 QVA----------------------------------------------------------PYKKLAGGVKFLETIPRNP  316 (334)
Q Consensus       295 ~i~----------------------------------------------------------~~~~~~~~i~~v~~lP~t~  316 (334)
                      +|+                                                          +++.|.. ++++++||+|+
T Consensus       431 ~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~-i~~v~~iP~t~  509 (542)
T PRK07786        431 NIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFLTDRLARYKHPKA-LEIVDALPRNP  509 (542)
T ss_pred             EECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCCCHHHHHHHHHhhccCCCCCCE-EEEeccCCCCC
Confidence            998                                                          4445565 99999999999


Q ss_pred             CchhhHHHHhhhhcCCC
Q psy12107        317 AGKVLRNELKVFGTNPK  333 (334)
Q Consensus       317 ~GKi~r~~l~~~~~~~~  333 (334)
                      +||++|++|++.+.+.+
T Consensus       510 ~GKv~r~~L~~~~~~~~  526 (542)
T PRK07786        510 AGKVLKTELRERYGACV  526 (542)
T ss_pred             cccccHHHHHHHHHhhh
Confidence            99999999999987643

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=100.00  E-value=2.1e-44  Score=349.57  Aligned_cols=265  Identities=28%  Similarity=0.430  Sum_probs=215.2

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++|+++++|||||||.||||+++|+++.++........       ...++|++++.+|++|.+++...++.++..|+
T Consensus       361 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~-------~~~~~d~~l~~~Pl~h~~g~~~~~~~~l~~G~  433 (718)
T PRK08043        361 KQQPEDAALILFTSGSEGHPKGVVHSHKSLLANVEQIKTIA-------DFTPNDRFMSALPLFHSFGLTVGLFTPLLTGA  433 (718)
T ss_pred             CCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhh-------CCCccCeEEEcCcchhhhhhHHHHHHHHHcCC
Confidence            34678999999999999999999999999988766554332       25788999999999999998777888999999


Q ss_pred             EEEEcCC-CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCcee
Q psy12107        135 HMITIPK-FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR  213 (334)
Q Consensus       135 ~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~  213 (334)
                      ++++.+. +++..+.+.++++++|+++++|+++..+.+..  ...++++||.+++||+++++++.+.+++.++.   +++
T Consensus       434 ~vv~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~---~l~  508 (718)
T PRK08043        434 EVFLYPSPLHYRIVPELVYDRNCTVLFGTSTFLGNYARFA--NPYDFARLRYVVAGAEKLQESTKQLWQDKFGL---RIL  508 (718)
T ss_pred             EEEEeCCcccHHHHHHHHHhcCCeEEEchHHHHHHhhhhc--CcccccceEEEEEeCccCCHHHHHHHHHHcCC---Cee
Confidence            9998764 57788899999999999999999998886642  34567899999999999999999999999864   799


Q ss_pred             eccCCCCCCCcccccccCCC------------------CccccCccc------cccccccC--Cccc-------cccccC
Q psy12107        214 QGYGMTETSPCTLYTRFAIP------------------EAKLGSTGQ------LVMLGYLK--NEEA-------TKETVD  260 (334)
Q Consensus       214 ~~YG~tE~g~~~~~~~~~~~------------------~~~~~~~G~------~~~~gy~~--~~~~-------~~~~~~  260 (334)
                      +.||+||++.+.+.......                  ....+..|+      .++.||++  +++.       +...+.
T Consensus       509 ~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~~~i~d~~~~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~  588 (718)
T PRK08043        509 EGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVPGIEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEM  588 (718)
T ss_pred             cccCcccccceEEecCCcccCCCCCCCcCCCCeeEEecCCCCCCceEEEEecCCccccccCCCCcccccccccccccccc
Confidence            99999999865543211000                  000111233      37889998  3442       222233


Q ss_pred             CCCceecCceEEEecCCcEEEEccCCceEEEcCEEee-------------------------------------------
Q psy12107        261 SEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-------------------------------------------  297 (334)
Q Consensus       261 ~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-------------------------------------------  297 (334)
                      .+|||+|||+|++|+||+++++||.||+||++|++|+                                           
T Consensus       589 ~~gw~~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~~~~~~~~  668 (718)
T PRK08043        589 ERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTTDSELTRE  668 (718)
T ss_pred             cCCeEecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEcCcccCHH
Confidence            5799999999999999999999999999999999999                                           


Q ss_pred             ------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        298 ------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       298 ------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                                  .+++|.. ++++++||+|++|||+|++|++.+.+.
T Consensus       669 ~l~~~~~~~~l~~~~vP~~-i~~v~~lP~t~~GKi~r~~L~~~~~~~  714 (718)
T PRK08043        669 KLQQYAREHGVPELAVPRD-IRYLKQLPLLGSGKPDFVTLKSMVDEP  714 (718)
T ss_pred             HHHHHHHhcCCCcccCCce-EEEecccCcCCCCCcCHHHHHHHHhcc
Confidence                        4566766 999999999999999999999987653

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.9e-44  Score=336.07  Aligned_cols=267  Identities=31%  Similarity=0.535  Sum_probs=224.5

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ....++++++|+|||||||.||+|+++|+++..+........       .....|++++.+|++|.+++...++.++..|
T Consensus       185 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-------~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G  257 (546)
T PRK08314        185 HTAGPDDLAVLPYTSGTTGVPKGCMHTHRTVMANAVGSVLWS-------NSTPESVVLAVLPLFHVTGMVHSMNAPIYAG  257 (546)
T ss_pred             CCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-------CCCCCceEEEEcCchHHHHHHHHHHHHHHcC
Confidence            345678999999999999999999999999988776554433       2568899999999999999888788999999


Q ss_pred             cEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCcee
Q psy12107        134 MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR  213 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~  213 (334)
                      +++++.+.+++..+++.++++++|++.++|+++..+.........+++++|.+++||+++++++.+++.+.++.   +++
T Consensus       258 ~~i~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~---~~~  334 (546)
T PRK08314        258 ATVVLMPRWDREAAARLIERYRVTHWTNIPTMVVDFLASPGLAERDLSSLRYIGGGGAAMPEAVAERLKELTGL---DYV  334 (546)
T ss_pred             CeEEecCCCCHHHHHHHHHHhcCceecccHHHHHHHHhCCCccccCchhhheeeeccccCCHHHHHHHHHHcCC---cEE
Confidence            99999999999999999999999999999999999987765556678899999999999999999999999864   799


Q ss_pred             eccCCCCCCCcccccccCC-----------------------CCccccCcccc------ccccccCCccccccccC---C
Q psy12107        214 QGYGMTETSPCTLYTRFAI-----------------------PEAKLGSTGQL------VMLGYLKNEEATKETVD---S  261 (334)
Q Consensus       214 ~~YG~tE~g~~~~~~~~~~-----------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~---~  261 (334)
                      +.||+||++..........                       .....+..|++      ++.||+++++.+...|.   .
T Consensus       335 ~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~  414 (546)
T PRK08314        335 EGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDG  414 (546)
T ss_pred             ecccccccccceecCCCcCCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCC
Confidence            9999999986543221100                       01112333443      68899999988887763   3


Q ss_pred             CCceecCceEEEecCCcEEEEccCCceEEEcCEEee--------------------------------------------
Q psy12107        262 EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA--------------------------------------------  297 (334)
Q Consensus       262 ~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~--------------------------------------------  297 (334)
                      ++||+|||+|+++++|.+++.||.||+|+++|++|+                                            
T Consensus       415 ~~~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~  494 (546)
T PRK08314        415 KRFFRTGDLGRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGK  494 (546)
T ss_pred             CceEecCCEEEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCC
Confidence            469999999999999999999999999999999999                                            


Q ss_pred             ---------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 ---------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 ---------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                     +++.|.. ++++++||+|++||++|++|++...+
T Consensus       495 ~~~~~l~~~~~~~l~~~~~P~~-~~~v~~iP~t~~GKv~r~~L~~~~~~  542 (546)
T PRK08314        495 TTEEEIIAWAREHMAAYKYPRI-VEFVDSLPKSGSGKILWRQLQEQEKA  542 (546)
T ss_pred             CCHHHHHHHHHHhcccCCCCcE-EEEecCCCCCCccceeHHHHHHHHhh
Confidence                           4445555 99999999999999999999987643

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-43  Score=333.98  Aligned_cols=285  Identities=27%  Similarity=0.503  Sum_probs=233.6

Q ss_pred             CccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecc
Q psy12107         36 NIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLP  115 (334)
Q Consensus        36 ~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  115 (334)
                      ....++++..............++++++++|||||||.||+|.++|+++..+........       ....++++++.+|
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-------~~~~~~~~~~~~p  220 (523)
T PRK08316        148 GWLDFADWAEAGSVAEPDVELADDDLAQILYTSGTESLPKGAMLTHRALIAEYVSCIVAG-------DMSADDIPLHALP  220 (523)
T ss_pred             chhhHHHHHhcCCCccCccCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHHh-------CCCCCceEEEccC
Confidence            345566555322221122456788999999999999999999999999987765544333       2567899999999


Q ss_pred             hhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCH
Q psy12107        116 FFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATK  195 (334)
Q Consensus       116 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~  195 (334)
                      ++|..++...++.++..|+++++.+.++++.+++.|+++++|++.++|+++..|++.......+++++|.+++||+.+++
T Consensus       221 ~~h~~g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~  300 (523)
T PRK08316        221 LYHCAQLDVFLGPYLYVGATNVILDAPDPELILRTIEAERITSFFAPPTVWISLLRHPDFDTRDLSSLRKGYYGASIMPV  300 (523)
T ss_pred             CchhhhHHHHHHHHHhcCceEEEecCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHcCcccccCCcccceEEEEcCCcCCH
Confidence            99999987767778899999999988899999999999999999999999999998876666778899999999999999


Q ss_pred             HHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC------------------------CCccccCcccc------cc
Q psy12107        196 SLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI------------------------PEAKLGSTGQL------VM  245 (334)
Q Consensus       196 ~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~------------------------~~~~~~~~G~~------~~  245 (334)
                      ++.+.+++.++  +.++++.||+||++.+........                        .....+..|++      ++
T Consensus       301 ~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gei~v~~~~~~  378 (523)
T PRK08316        301 EVLKELRERLP--GLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVGEIVHRSPQLM  378 (523)
T ss_pred             HHHHHHHHHcC--CCceeeeecccccCccccccCccccccccCCcccCCCCcEEEEEcCCCCCCCCCCcceEEEECCchh
Confidence            99999999986  568999999999987554321110                        01112333443      67


Q ss_pred             ccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee----------------------------
Q psy12107        246 LGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA----------------------------  297 (334)
Q Consensus       246 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------------------------  297 (334)
                      .||+++++.+...| .++||+|||+|++++||.+++.||.+|+|+.+|++|+                            
T Consensus       379 ~~y~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~  457 (523)
T PRK08316        379 LGYWDDPEKTAEAF-RGGWFHSGDLGVMDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWI  457 (523)
T ss_pred             hhhcCCHHHHHHHh-hCCCeeccceEEEcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccC
Confidence            88999999888888 6899999999999999999999999999999999999                            


Q ss_pred             -----------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 -----------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 -----------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                                   +++.|.. +.+++++|+|++||++|++|++++.+
T Consensus       458 ~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~p~~-i~~v~~~p~t~~gKi~r~~l~~~~~~  519 (523)
T PRK08316        458 EAVTAVVVPKAGATVTEDELIAHCRARLAGFKVPKR-VIFVDELPRNPSGKILKRELRERYAG  519 (523)
T ss_pred             CeEEEEEEECCCCCCCHHHHHHHHHHhcccCCCCcE-EEEecCCCCCCccceeHHHHHHHHHh
Confidence                                         4445555 99999999999999999999999865

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=1.6e-43  Score=332.88  Aligned_cols=262  Identities=24%  Similarity=0.369  Sum_probs=219.4

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHH-HHHHHHHh
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG-ILNVVMMY  132 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~~  132 (334)
                      ....++++++++|||||||.||+|+++|+++..++.......       ....++++++.+|++|.+++.. .++.++..
T Consensus       178 ~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-------~~~~~d~~l~~~P~~h~~~~~~~~~~~~l~~  250 (527)
T TIGR02275       178 PPTKSDEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-------WLTQQTRYLCALPAAHNYPLSSPGALGVFYA  250 (527)
T ss_pred             CCCCCCccEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-------CCCcCCEEEECCChHhhhhhhHHHHHHHHhc
Confidence            355789999999999999999999999999987776544432       2567899999999999998765 36778899


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCce
Q psy12107        133 GMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITI  212 (334)
Q Consensus       133 G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i  212 (334)
                      |+++++.+.+++..+++.++++++|+++++|+++..|.+.......+++++|.+++||+++++++.+++.+.++.   ++
T Consensus       251 G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~---~~  327 (527)
T TIGR02275       251 GGCVVLAPDPSPTDCFPLIERHKVTVTALVPPAVALWMQAASKSRYDLSSLKLLQVGGAKFSEAAARRVPAVFGC---QL  327 (527)
T ss_pred             CCeEEECCCCCHHHHHHHHHHhCCeEEEecHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHhCC---eE
Confidence            999999888899999999999999999999999999988776666778899999999999999999999999864   79


Q ss_pred             eeccCCCCCCCccccccc---------CC---------------CCccccCcccc------ccccccCCccccccccCCC
Q psy12107        213 RQGYGMTETSPCTLYTRF---------AI---------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSE  262 (334)
Q Consensus       213 ~~~YG~tE~g~~~~~~~~---------~~---------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~  262 (334)
                      ++.||+||++........         +.               .....+..|++      ++.||+++++.+...+..+
T Consensus       328 ~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~d  407 (527)
T TIGR02275       328 QQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAE  407 (527)
T ss_pred             EeeeccCccCccccCCCCccccccccCCCCCCCCceEEEECCCCCCCCCCCceEEEecCCccchhhcCChhHhHhhcCcC
Confidence            999999996533221100         00               00112333333      7889999999999999889


Q ss_pred             CceecCceEEEecCCcEEEEccCCceEEEcCEEee---------------------------------------------
Q psy12107        263 GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA---------------------------------------------  297 (334)
Q Consensus       263 ~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~---------------------------------------------  297 (334)
                      +||+|||++++++||++++.||.+|+|+.+|++|+                                             
T Consensus       408 g~~~TGDl~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~~~~~~  487 (527)
T TIGR02275       408 GFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDPALKAA  487 (527)
T ss_pred             CCEEcCceEEEcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCCCCCHH
Confidence            99999999999999999999999999999999999                                             


Q ss_pred             ------------eeeeccCcEEEeecCCCCCCchhhHHHHh
Q psy12107        298 ------------PYKKLAGGVKFLETIPRNPAGKVLRNELK  326 (334)
Q Consensus       298 ------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~  326 (334)
                                  +++.|.. ++++++||+|++||++|++||
T Consensus       488 ~l~~~l~~~~l~~~~~P~~-i~~v~~iP~t~sGKv~r~~L~  527 (527)
T TIGR02275       488 QLRRFLRERGLAEYKLPDR-VEFIDSLPLTAVGKIDKKALR  527 (527)
T ss_pred             HHHHHHHhCCCccccCCCE-EEEeccCCCCCccceeHHhcC
Confidence                        4455555 999999999999999999885

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=100.00  E-value=1.5e-43  Score=334.45  Aligned_cols=313  Identities=24%  Similarity=0.386  Sum_probs=244.5

Q ss_pred             hhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHH
Q psy12107          7 LLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAV   86 (334)
Q Consensus         7 ~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~   86 (334)
                      +.+.+.++...++.+++++.++.... ......+.+++............+++|+++|+|||||||.||+|+++|+++..
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK~v~~t~~~l~~  214 (547)
T PRK06087        136 PVDLILPLQNQLPQLQQIVGVDKLAP-ATSSLSLSQIIADYEPLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILA  214 (547)
T ss_pred             HHHHHHHHHhhCCCCcEEEEeCCcCC-CcCccCHHHHhccCCcccCCCCCCCCCeEEEEeCCCCCCCCcEEEEecHHHHH
Confidence            34555566667777777777764321 11234666666322111112345678999999999999999999999999987


Q ss_pred             HhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHH
Q psy12107         87 NLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLL  166 (334)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l  166 (334)
                      +........       ....++++++..|++|.+++...++.++..|+++++.+.+++..+++.|+++++++++++|+++
T Consensus       215 ~~~~~~~~~-------~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~  287 (547)
T PRK06087        215 SERAYCARL-------NLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQRCTCMLGATPFI  287 (547)
T ss_pred             HHHHHHHhc-------CCCCCCeEEEecchHHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCCEEeccHHHH
Confidence            665543332       2568899999999999999887788889999999999999999999999999999999998888


Q ss_pred             HHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC--------------
Q psy12107        167 LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI--------------  232 (334)
Q Consensus       167 ~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~--------------  232 (334)
                      ..+++.......+++++|.+++||+++++++.+.+.+. +   +++++.||+||++.+........              
T Consensus       288 ~~~l~~~~~~~~~~~~lr~i~~gG~~~~~~~~~~~~~~-~---~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~  363 (547)
T PRK06087        288 YDLLNLLEKQPADLSALRFFLCGGTTIPKKVARECQQR-G---IKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAG  363 (547)
T ss_pred             HHHHhccccCCCCCCCeEEEEEcCCCCCHHHHHHHHHc-C---CcEEEEecccccCCccccCCCcchhhcCCcCCccCCC
Confidence            77777655555678899999999999999999988764 4   48999999999886543221100              


Q ss_pred             ----------CCccccCccc------cccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEe
Q psy12107        233 ----------PEAKLGSTGQ------LVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV  296 (334)
Q Consensus       233 ----------~~~~~~~~G~------~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i  296 (334)
                                .+...+..|+      .++.||+++++.+...+..++||+|||+++++++|+++++||.+|+|+.+|++|
T Consensus       364 ~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~v  443 (547)
T PRK06087        364 VEIKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENI  443 (547)
T ss_pred             ceEEEEcCCCCCCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECCCCCEEEEecchhhhhcCCEEE
Confidence                      0111223343      378999999999988887889999999999999999999999999999999999


Q ss_pred             e-----------------------------------------------------------eeeeccCcEEEeecCCCCCC
Q psy12107        297 A-----------------------------------------------------------PYKKLAGGVKFLETIPRNPA  317 (334)
Q Consensus       297 ~-----------------------------------------------------------~~~~~~~~i~~v~~lP~t~~  317 (334)
                      +                                                           +++.|.. |+++++||+|++
T Consensus       444 ~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~~-i~~v~~iP~t~s  522 (547)
T PRK06087        444 SSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFSRKRVAKYKYPEH-IVVIDKLPRTAS  522 (547)
T ss_pred             CHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCCCCHHHHHHHHHhccccccCCCeE-EEEeccCCCCCC
Confidence            8                                                           2334555 999999999999


Q ss_pred             chhhHHHHhhhhcCC
Q psy12107        318 GKVLRNELKVFGTNP  332 (334)
Q Consensus       318 GKi~r~~l~~~~~~~  332 (334)
                      ||++|++|++.+.+.
T Consensus       523 GK~~r~~l~~~~~~~  537 (547)
T PRK06087        523 GKIQKFLLRKDIMRR  537 (547)
T ss_pred             CcCcHHHHHHHHHHH
Confidence            999999999887543

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.6e-43  Score=335.21  Aligned_cols=268  Identities=35%  Similarity=0.534  Sum_probs=218.3

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++|+++++|||||||.||+|+++|+++..+.......+...    .....+++++.+|++|.+++...++..+..|.
T Consensus       203 ~~~~~d~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~pl~h~~~~~~~~~~~~~~g~  278 (562)
T PRK05677        203 NPQADDVAVLQYTGGTTGVAKGAMLTHRNLVANMLQCRALMGSN----LNEGCEILIAPLPLYHIYAFTFHCMAMMLIGN  278 (562)
T ss_pred             CCCccCEEEEEeCCCCCCCCcEEEEehhHHHHHHHHHHHHhccC----CCCCccEEEEcCcHHHHHHHHHHHHHHHHcCC
Confidence            34679999999999999999999999999987654433221100    01235688999999999998776777788888


Q ss_pred             EEEEcC-CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCcee
Q psy12107        135 HMITIP-KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR  213 (334)
Q Consensus       135 ~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~  213 (334)
                      ++++.+ .+++..+++.|+++++|+++++|+++..|..........++++|.+++||+++++++.+.+++.++.   +++
T Consensus       279 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~---~v~  355 (562)
T PRK05677        279 HNILISNPRDLPAMVKELGKWKFSGFVGLNTLFVALCNNEAFRKLDFSALKLTLSGGMALQLATAERWKEVTGC---AIC  355 (562)
T ss_pred             eEEEecCcccHHHHHHHHHHcCceEEecHHHHHHHHHhCcccccCChhhceEEEEcCccCCHHHHHHHHHHcCC---Cee
Confidence            766654 4789999999999999999999999999987655445567899999999999999999999998864   799


Q ss_pred             eccCCCCCCCcccccccCC----------------------CCccccCcccc------ccccccCCccccccccCCCCce
Q psy12107        214 QGYGMTETSPCTLYTRFAI----------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWL  265 (334)
Q Consensus       214 ~~YG~tE~g~~~~~~~~~~----------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~  265 (334)
                      +.||+||++.+........                      .+...+..|++      ++.||+++++.+.+.|..++||
T Consensus       356 ~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~  435 (562)
T PRK05677        356 EGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWL  435 (562)
T ss_pred             ccCCccccCcceeecCccCCCCCccCccCCCCEEEEECCCCCCCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcc
Confidence            9999999886554322110                      01122334444      6789999999999999889999


Q ss_pred             ecCceEEEecCCcEEEEccCCceEEEcCEEee------------------------------------------------
Q psy12107        266 HTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA------------------------------------------------  297 (334)
Q Consensus       266 ~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~------------------------------------------------  297 (334)
                      +|||+|++++||++++.||.+|+|+++|++|+                                                
T Consensus       436 ~TGDlg~~~~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l  515 (562)
T PRK05677        436 KTGDIALIQEDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKEQV  515 (562)
T ss_pred             cccceEEECCCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCCCHHHH
Confidence            99999999999999999999999999999998                                                


Q ss_pred             ---------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhc
Q psy12107        298 ---------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGT  330 (334)
Q Consensus       298 ---------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~  330 (334)
                               +++.|.. |+++++||+|++||++|++|++...
T Consensus       516 ~~~~~~~l~~~~~P~~-i~~v~~iP~t~sGKi~r~~L~~~~~  556 (562)
T PRK05677        516 MEHMRANLTGYKVPKA-VEFRDELPTTNVGKILRRELRDEEL  556 (562)
T ss_pred             HHHHHHhhhhccCCcE-EEEeccCCCCCcccccHHHHHHHHH
Confidence                     5556666 9999999999999999999998653

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=4.5e-43  Score=330.60  Aligned_cols=300  Identities=26%  Similarity=0.420  Sum_probs=234.1

Q ss_pred             HHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhc-CC---CCC----CCCCCCCCCCEEEEecCCCCCCCchhhhhcc
Q psy12107         10 VGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVT-SQ---PPD----FQLPKISPNDLAMLPYSSGTTGVPKGVKLSH   81 (334)
Q Consensus        10 ~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~-~~---~~~----~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~   81 (334)
                      .+..+.+.++..+.+++++..     +...+++++. ..   .+.    .......++++++++|||||||.||+|+++|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~  217 (538)
T TIGR03208       143 MARELQSKLPALRQVVVIDGD-----GDDSFDRVLMTPERDDTPDAAAILAGPRPSPDDVTQLIYTSGTTGEPKGVMHTA  217 (538)
T ss_pred             HHHHHhccCCcceEEEEecCC-----CCcCHHHHhhccccccccccccccccCCCCCCCeEEEEECCCCCCCCcEEEeeh
Confidence            333444556666677776532     2234555442 11   010    0112356789999999999999999999999


Q ss_pred             hHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEee
Q psy12107         82 NNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFV  161 (334)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~  161 (334)
                      +++..........+       ....++++++.+|++|..++...++.++..|+++++.+.+++..+++.+++++++++.+
T Consensus       218 ~~~~~~~~~~~~~~-------~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~vt~~~~  290 (538)
T TIGR03208       218 NTLFSNIHPYAERL-------ELGGGDVILMASPMAHQTGFMYGLMMPLILNATAVLQDIWNPARAAELIRETGVTFTMA  290 (538)
T ss_pred             HHHHHHHHHHHhhc-------CCCCCCeEEEeCCchhHHHHHHHHHHHHHcCCEEEecCccCHHHHHHHHHHhCCeEEec
Confidence            99988776555433       25678999999999999998777889999999999988899999999999999999999


Q ss_pred             chHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC---------
Q psy12107        162 VPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI---------  232 (334)
Q Consensus       162 ~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~---------  232 (334)
                      +|+++..+.........+++++|.+++||+++++++.+++.+.++.   ++++.||+||++.+........         
T Consensus       291 ~p~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~---~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G  367 (538)
T TIGR03208       291 STPFLTDLCRAVKESGAPVPSLFTFLCAGAPIPGILVERAWELLGA---LIVSAWGMTENGAVTVTEPDDALEKASTTDG  367 (538)
T ss_pred             CHHHHHHHHhchhccCCCCCcceEEEEcCCCCCHHHHHHHHHHcCC---eEEeeeccCcCCCccccCcccchhhccCccc
Confidence            9999999887654445677899999999999999999999998864   7999999999986554322110         


Q ss_pred             ---------------CCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEE
Q psy12107        233 ---------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKV  291 (334)
Q Consensus       233 ---------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~  291 (334)
                                     .+...+..|++      ++.||+++++.+.  .+.++||+|||+++++++|.++++||.+|+|+.
T Consensus       368 ~~~~g~~v~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~--~~~~~~~~TGD~~~~~~~g~l~~~gR~~~~i~~  445 (538)
T TIGR03208       368 RPLPGVEVKVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNS--TDAEGWFDTGDLAFQDAEGYIRINGRSKDVIIR  445 (538)
T ss_pred             ccCCCCEEEEECCCCCCCcCCCCcEEEEecCcccccccCCccccc--ccCCCceeccceEEECCCCcEEEEeccCceEEE
Confidence                           01112333444      6789999988764  346899999999999999999999999999999


Q ss_pred             cCEEee----------------------------------------------------------eeeeccCcEEEeecCC
Q psy12107        292 KGNQVA----------------------------------------------------------PYKKLAGGVKFLETIP  313 (334)
Q Consensus       292 ~G~~i~----------------------------------------------------------~~~~~~~~i~~v~~lP  313 (334)
                      +|++|+                                                          +++.|.. ++++++||
T Consensus       446 ~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~~l~~~~~P~~-i~~v~~iP  524 (538)
T TIGR03208       446 GGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLKAQKVALQYIPER-LEVVDALP  524 (538)
T ss_pred             CCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCCCHHHHHHHHHhcchhhccCCcE-EEEeccCC
Confidence            999999                                                          3444555 99999999


Q ss_pred             CCCCchhhHHHHhh
Q psy12107        314 RNPAGKVLRNELKV  327 (334)
Q Consensus       314 ~t~~GKi~r~~l~~  327 (334)
                      +|++||++|++|++
T Consensus       525 ~t~~gKv~r~~L~~  538 (538)
T TIGR03208       525 ATPAGKIQKFRLRE  538 (538)
T ss_pred             CCCccccchHhhcC
Confidence            99999999999873

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.4e-43  Score=337.55  Aligned_cols=313  Identities=16%  Similarity=0.201  Sum_probs=234.6

Q ss_pred             hHHHHHHhhhCCCCceEEEEcCCCC-----CCCCccchhhhhc-CCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcc
Q psy12107          8 LEVGTKIGATLPNFRGTIVVGGEHD-----KSKNIFGFKQLVT-SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSH   81 (334)
Q Consensus         8 ~~~~~~~~~~~~~~~~ii~~~~~~~-----~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~   81 (334)
                      .+.+.++...++.++.+++++....     .......|++++. ...........+++++++|+|||||||.||||+++|
T Consensus       206 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ilyTSGTTG~PKgV~~sh  285 (655)
T PRK03584        206 RAKVAELRAALPSLEHVVVVPYLGPAAAAAALPGALLWEDFLAPAEAAELEFEPVPFDHPLWILYSSGTTGLPKCIVHGH  285 (655)
T ss_pred             HHHHHHHHhcCCCccEEEEEecCCCcccccccCCcccHHHHhhccccCCCCceecCCCCcEEEEecCCCCCCCceEEECc
Confidence            4556666677788888887763210     1223456777764 222222234567799999999999999999999999


Q ss_pred             hHHHHH-hhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC----CCHHHHHHHHHHcCC
Q psy12107         82 NNCAVN-LEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK----FTPETYIECVVKYKP  156 (334)
Q Consensus        82 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~----~~~~~~~~~i~~~~~  156 (334)
                      ++++.+ .......+       ...++|++++..++.|+...  .++.++..|+++++.+.    +++..+++.|+++++
T Consensus       286 ~~~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~~~--~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~v  356 (655)
T PRK03584        286 GGILLEHLKELGLHC-------DLGPGDRFFWYTTCGWMMWN--WLVSGLLVGATLVLYDGSPFYPDPNVLWDLAAEEGV  356 (655)
T ss_pred             cHHHHHHHHHHHHhc-------CCCCCCEEEEcCCchHHhHH--HHHHHHHcCCEEEEeCCCCCCCCHHHHHHHHHHHCC
Confidence            987644 32222222       25678999999998887543  25678999999998752    589999999999999


Q ss_pred             eEEeechHHHHHHhcCCC--CCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCccccccc--C-
Q psy12107        157 TILFVVPSLLLFLASHPA--VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF--A-  231 (334)
Q Consensus       157 t~l~~~p~~l~~l~~~~~--~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~--~-  231 (334)
                      |++.++|++++.|.+...  ....++++||.+++||+++++++.+++.+.++. ++.+.+.||+||++........  . 
T Consensus       357 t~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~-~~~~~~~yG~TE~~~~~~~~~~~~~~  435 (655)
T PRK03584        357 TVFGTSAKYLDACEKAGLVPGETHDLSALRTIGSTGSPLPPEGFDWVYEHVKA-DVWLASISGGTDICSCFVGGNPLLPV  435 (655)
T ss_pred             EEEEcCHHHHHHHHhcCCCccccCChhheEEEEEecCCCCHHHHHHHHHHhCC-CceEEeccChHhhhcccccCCCCCCc
Confidence            999999999999876432  234678899999999999999999999999964 6789999999997543221100  0 


Q ss_pred             --------------------CCCccccCcccc--------ccccccCCccccc--cc-cC-CCCceecCceEEEecCCcE
Q psy12107        232 --------------------IPEAKLGSTGQL--------VMLGYLKNEEATK--ET-VD-SEGWLHTGDVAYYDEDGYF  279 (334)
Q Consensus       232 --------------------~~~~~~~~~G~~--------~~~gy~~~~~~~~--~~-~~-~~~~~~TGD~~~~~~dg~~  279 (334)
                                          ..+. .+..|++        ++.||+++++.+.  .. |. .++||+|||+|++|+||++
T Consensus       436 ~~g~~g~p~~g~~~~ivd~~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l  514 (655)
T PRK03584        436 YRGEIQCRGLGMAVEAWDEDGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITEHGGV  514 (655)
T ss_pred             CCCccCCCcCCceeEEECCCCCCC-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECCCCeE
Confidence                                0001 2344443        5679999987543  11 11 2579999999999999999


Q ss_pred             EEEccCCceEEEcCEEee------------------------------------------------------------ee
Q psy12107        280 YIVDRTKELIKVKGNQVA------------------------------------------------------------PY  299 (334)
Q Consensus       280 ~~~GR~~d~i~~~G~~i~------------------------------------------------------------~~  299 (334)
                      +++||.||+||++|++|+                                                            ++
T Consensus       515 ~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~~~~~L~~~  594 (655)
T PRK03584        515 VIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALRARIRTTIRTNLSPR  594 (655)
T ss_pred             EEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHHHHHHHHHHHHhhCCCC
Confidence            999999999999999999                                                            55


Q ss_pred             eeccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        300 KKLAGGVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       300 ~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                      ++|.. |+++++||+|++|||+|+.||+.+.+.
T Consensus       595 ~~P~~-i~~v~~lP~t~sGKi~r~~lr~~~~~~  626 (655)
T PRK03584        595 HVPDK-IIAVPDIPRTLSGKKVELPVKKLLHGR  626 (655)
T ss_pred             cCCCE-EEECCCCCCCCCccchHHHHHHHHcCC
Confidence            66766 999999999999999999999987543

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=6.7e-44  Score=342.43  Aligned_cols=284  Identities=26%  Similarity=0.396  Sum_probs=204.1

Q ss_pred             hhhHHHHHHhhhCC-CCceEEEEcCCCCC--------CCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchh
Q psy12107          6 QLLEVGTKIGATLP-NFRGTIVVGGEHDK--------SKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKG   76 (334)
Q Consensus         6 ~~~~~~~~~~~~~~-~~~~ii~~~~~~~~--------~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~   76 (334)
                      +..+.+.++...++ .++.||.+++....        .....+|++++.......+.+...++|+++|+|||||||.|||
T Consensus       158 ~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~i~yTSGTTG~PKG  237 (660)
T PLN02861        158 SKISSILSCLPKCSSNLKTIVSFGDVSSEQKEEAEELGVSCFSWEEFSLMGSLDCELPPKQKTDICTIMYTSGTTGEPKG  237 (660)
T ss_pred             HHHHHHHHhhhhCCCCCEEEEEECCCChhhhhhhhcCCcEEEEHHHHHHhCcccCCCCccCCCceEEEEecCCCCCCCCE
Confidence            34455555555554 57888887642110        1123567777632111112234568999999999999999999


Q ss_pred             hhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCC
Q psy12107         77 VKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKP  156 (334)
Q Consensus        77 v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~  156 (334)
                      |++||+++..+.......+....  .....+|++++.+|++|+++... .+.++..|+++++.. +++..+++.|++++|
T Consensus       238 V~lth~~l~~~~~~~~~~~~~~~--~~~~~~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~  313 (660)
T PLN02861        238 VILTNRAIIAEVLSTDHLLKVTD--RVATEEDSYFSYLPLAHVYDQVI-ETYCISKGASIGFWQ-GDIRYLMEDVQALKP  313 (660)
T ss_pred             EEEecHHHHHHHHHHHhcccccc--ccCCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHHHHHhCC
Confidence            99999999887655433221000  01357899999999999999876 455789999988764 689999999999999


Q ss_pred             eEEeechHHHHHHhcC-------------------------------------CCCCcc-------cc-ccceeeeecCC
Q psy12107        157 TILFVVPSLLLFLASH-------------------------------------PAVTPE-------HL-ASIREVTCGAA  191 (334)
Q Consensus       157 t~l~~~p~~l~~l~~~-------------------------------------~~~~~~-------~~-~~lr~v~~~G~  191 (334)
                      |+++++|+++..|.+.                                     +.....       .+ .++|.+++||+
T Consensus       314 T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~~lr~~~~Gga  393 (660)
T PLN02861        314 TIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGGRVRLLLSGAA  393 (660)
T ss_pred             cEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCCcEEEEEECCC
Confidence            9999999999988631                                     000000       11 47899999999


Q ss_pred             CCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC---------C----Cc-------------cccCcccc--
Q psy12107        192 PATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI---------P----EA-------------KLGSTGQL--  243 (334)
Q Consensus       192 ~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~---------~----~~-------------~~~~~G~~--  243 (334)
                      ++++++.+ +.+.++  ...+++.||+||+++.++......         +    +.             ..+..|++  
T Consensus       394 pl~~~~~~-~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~~~~GEi~v  470 (660)
T PLN02861        394 PLPRHVEE-FLRVTS--CSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSDVPRGEICL  470 (660)
T ss_pred             CCCHHHHH-HHHHHc--CCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCCCCceeEEE
Confidence            99999854 666676  346999999999875433211100         0    00             01123444  


Q ss_pred             ----ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEE-cCEEee
Q psy12107        244 ----VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKV-KGNQVA  297 (334)
Q Consensus       244 ----~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~i~  297 (334)
                          ++.|||++|+.|.+.| .+|||+|||+|++|+||+++++||+||+||+ +|++|+
T Consensus       471 rGp~v~~GY~~~pe~T~~~f-~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~  528 (660)
T PLN02861        471 RGNTLFSGYHKRQDLTEEVL-IDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVA  528 (660)
T ss_pred             cCCcccccccCCHHHHHhhh-hccCcccCceEEECCCCcEEEEeccccceEcCCCeEEc
Confidence                7899999999999999 5899999999999999999999999999997 799999

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.3e-43  Score=328.47  Aligned_cols=264  Identities=32%  Similarity=0.504  Sum_probs=221.4

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++++|||||||.||+|.++|+++..+.......+       ....+++++..+|++|.+++...++.++..|+
T Consensus       145 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-------~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~g~  217 (496)
T PRK06839        145 EKNESASFIICYTSGTTGKPKGAVLTQENMFWNALNNTFAI-------DLTMHDRSIVLLPLFHIGGIGLFAFPTLFAGG  217 (496)
T ss_pred             CCCCCCcEEEEeCCCCCCCCcEEEEEhHHHHHHHHHHHHHc-------CCCCCCeEEEeeCCcchhhHHHHHHHHHhcCc
Confidence            44568999999999999999999999999876544333222       25678899999999999998876788899999


Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceee
Q psy12107        135 HMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ  214 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~  214 (334)
                      ++++.+.++++.+++.++++++|++.++|++++.|.+.......+++++|.+++||+++++++.+.+++. +   +++.+
T Consensus       218 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~-g---~~~~~  293 (496)
T PRK06839        218 VIIVPRKFEPTKALSMIEKHKVTVVMGVPTIHQALINCSKFETTNLQSVRWFYNGGAPCPEELMREFIDR-G---FLFGQ  293 (496)
T ss_pred             EEEEccCCCHHHHHHHHHhhCCeEEEehHHHHHHHHhCcccccCCCcccceEEECCCCCCHHHHHHHHHh-C---CeeEe
Confidence            9999888999999999999999999999999999998776556678899999999999999999999886 4   47999


Q ss_pred             ccCCCCCCCcccccccCCC------------------------CccccCcccc------ccccccCCccccccccCCCCc
Q psy12107        215 GYGMTETSPCTLYTRFAIP------------------------EAKLGSTGQL------VMLGYLKNEEATKETVDSEGW  264 (334)
Q Consensus       215 ~YG~tE~g~~~~~~~~~~~------------------------~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~  264 (334)
                      .||+||++.+.+.......                        ....+..|++      ++.||+++++.+...+ .+||
T Consensus       294 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~  372 (496)
T PRK06839        294 GFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETI-QDGW  372 (496)
T ss_pred             eccCCCCCcceEecccccccccCCCCcccCCCceEEEECCCcCCCCCCCceEEEEECCCcchhhcCChHHHHHHH-cCCC
Confidence            9999999864432211100                        0122333443      6789999999888877 5899


Q ss_pred             eecCceEEEecCCcEEEEccCCceEEEcCEEee-----------------------------------------------
Q psy12107        265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-----------------------------------------------  297 (334)
Q Consensus       265 ~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-----------------------------------------------  297 (334)
                      |+|||+++++++|++++.||.+|+|+.+|++|+                                               
T Consensus       373 ~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~  452 (496)
T PRK06839        373 LCTGDLARVDEDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKD  452 (496)
T ss_pred             eeecceEEEcCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHH
Confidence            999999999999999999999999999999999                                               


Q ss_pred             ----------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 ----------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 ----------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                +++.|.. +.+++++|+|++||++|++|+++.++
T Consensus       453 l~~~~~~~l~~~~~P~~-~~~v~~~P~t~~GKi~r~~l~~~~~~  495 (496)
T PRK06839        453 VIEHCRLFLAKYKIPKE-IVFLKELPKNATGKIQKAQLVNQLKS  495 (496)
T ss_pred             HHHHHHhhCcCCCCCcE-EEEeccCCCCccccccHHHHHHHhhc
Confidence                      5556766 99999999999999999999998764

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.7e-43  Score=334.51  Aligned_cols=319  Identities=23%  Similarity=0.404  Sum_probs=242.5

Q ss_pred             cchhhHHHHHHhhhCCCCceEEEEcCCCCC--------CCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCch
Q psy12107          4 IPQLLEVGTKIGATLPNFRGTIVVGGEHDK--------SKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPK   75 (334)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~--------~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK   75 (334)
                      +..+.+.+.++...++.++.+++++.....        .....+|++++.............++++++++|||||||.||
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK  197 (576)
T PRK05620        118 DPRLAEQLGEILKECPCVRAVVFIGPSDADSAAAHMPEGIKVYSYEALLDGRSTVYDWPELDETTAAAICYSTGTTGAPK  197 (576)
T ss_pred             ChhhHHHHHHHHhhCccccEEEEecCcccccchhccccccccccHHHHhhcCCCcCCCCCCCccceeEEEECCCCCCCCc
Confidence            456667777777788888888877642110        112456888874322222223456799999999999999999


Q ss_pred             hhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcC-CCCHHHHHHHHHHc
Q psy12107         76 GVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKY  154 (334)
Q Consensus        76 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~  154 (334)
                      +|+++|+++..+..........     .....+++++.+|++|.+++.. .+.++..|+++++.+ .+++..+++.|+++
T Consensus       198 gv~~s~~~l~~~~~~~~~~~~~-----~~~~~~~~l~~~pl~h~~g~~~-~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~  271 (576)
T PRK05620        198 GVVYSHRSLYLQSLSLRTTDSL-----AVTHGESFLCCVPIYHVLSWGV-PLAAFMSGTPLVFPGPDLSAPTLAKIIATA  271 (576)
T ss_pred             eEEEEcHHHHHHHHHhhhhhhc-----CCCCCCeEEEeCChHHhhhhHH-HHHHHhcCceEEecCCCCCHHHHHHHHHHh
Confidence            9999999986554322111101     2567899999999999999876 577888999988765 47999999999999


Q ss_pred             CCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccC---
Q psy12107        155 KPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA---  231 (334)
Q Consensus       155 ~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~---  231 (334)
                      ++++++++|+++..|+...........++|.+++||+++++++.+.+.+.++.   ++++.||+||++.+.......   
T Consensus       272 ~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~---~~~~~YG~tE~~~~~~~~~~~~~~  348 (576)
T PRK05620        272 MPRVAHGVPTLWIQLMVHYLKNPPERMSLQEIYVGGSAVPPILIKAWEERYGV---DVVHVWGMTETSPVGTVARPPSGV  348 (576)
T ss_pred             cCceeeecCHHHHHHHHHhhccCcccCceeEEEEcCCCCCHHHHHHHHHHhCC---ceeeeccccccccceeeeccCCcc
Confidence            99999999999998876543333344589999999999999999999998864   799999999998653321100   


Q ss_pred             -------------C----------CCc-----cccCcccc------ccccccCCcccc----------------ccccCC
Q psy12107        232 -------------I----------PEA-----KLGSTGQL------VMLGYLKNEEAT----------------KETVDS  261 (334)
Q Consensus       232 -------------~----------~~~-----~~~~~G~~------~~~gy~~~~~~~----------------~~~~~~  261 (334)
                                   .          ++.     ..+..|++      ++.||+++++.+                ...+..
T Consensus       349 ~~~~~~~~~~~~G~~~~~~~~~i~~~g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~~~~~~~~~~~~~~  428 (576)
T PRK05620        349 SGEARWAYRVSQGRFPASLEYRIVNDGQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFRGEDVEDANDRFTA  428 (576)
T ss_pred             ccccccccccccCCcCCceeEEEecCCccccCCCCCceEEEEEcCcccccccCCccccccccccccccccchhhhccccc
Confidence                         0          000     01223443      788999999877                233456


Q ss_pred             CCceecCceEEEecCCcEEEEccCCceEEEcCEEee--------------------------------------------
Q psy12107        262 EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA--------------------------------------------  297 (334)
Q Consensus       262 ~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~--------------------------------------------  297 (334)
                      ++||+|||++++++||.+++.||.+|+|+.+|++|+                                            
T Consensus       429 ~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~  508 (576)
T PRK05620        429 DGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERPLAVTVLAPGIEPT  508 (576)
T ss_pred             CCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCceeEEEEEecCCCCcc
Confidence            789999999999999999999999999999999998                                            


Q ss_pred             ----------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        298 ----------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       298 ----------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                                      +++.|.. |.++++||+|++||++|++|++++++.
T Consensus       509 ~~~~~~l~~~l~~~L~~~~~P~~-i~~v~~~P~t~~GKv~r~~L~~~~~~~  558 (576)
T PRK05620        509 RETAERLRDQLRDRLPNWMLPEY-WTFVDEIDKTSVGKFDKKDLRQHLADG  558 (576)
T ss_pred             cccHHHHHHHHHhhCccccCCeE-EEEeccCCCCCcccCcHHHHHHHHhcC
Confidence                            4445665 999999999999999999999998753

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=3.7e-43  Score=337.07  Aligned_cols=314  Identities=14%  Similarity=0.175  Sum_probs=232.1

Q ss_pred             hhHHHHHHhhhCCCCceEEEEcCCCCC------CCCccchhhhhcC-CCCCCCCCCCCCCCEEEEecCCCCCCCchhhhh
Q psy12107          7 LLEVGTKIGATLPNFRGTIVVGGEHDK------SKNIFGFKQLVTS-QPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKL   79 (334)
Q Consensus         7 ~~~~~~~~~~~~~~~~~ii~~~~~~~~------~~~~~~~~~ll~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~   79 (334)
                      +.+.+.++.+.+|.++.++++......      ..+...|++++.. .........++++|+++|+|||||||.||||++
T Consensus       205 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ilyTSGTTG~PKgV~~  284 (652)
T TIGR01217       205 RRDKVAEVRKELPTLRAVVHIPYLGPRETEAPKIDGALDLEDFTAAAQAAELVFEQLPFDHPLWILFSSGTTGLPKCIVH  284 (652)
T ss_pred             hHHHHHHHHhcCCCccEEEEEeCCCCcccccccccCcccHHHHHhcccCCCCCceecCCCCCEEEEEcCCCCCCCCeEEe
Confidence            356677777778888888887531100      0134567777632 111222234567999999999999999999999


Q ss_pred             cchHHHHHhh-hhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC----CCHHHHHHHHHHc
Q psy12107         80 SHNNCAVNLE-QCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK----FTPETYIECVVKY  154 (334)
Q Consensus        80 t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~----~~~~~~~~~i~~~  154 (334)
                      +|++++.+.. .....+       +..++|++++..|+.|+.. .. ++.++..|+++++.+.    .++..++++++++
T Consensus       285 sh~~~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~~-~~-~~~~l~~G~t~vl~~g~~~~~~~~~~~~~i~~~  355 (652)
T TIGR01217       285 SAGGTLVQHLKEHGLHC-------DLGPGDRLFYYTTTGWMMW-NW-LVSGLATGATLVLYDGSPGFPATNVLWDIAERT  355 (652)
T ss_pred             cccHHHHHHHHHHHhcc-------CCCCCcEEEEeCCcchhhh-HH-HHHHHhcCcEEEEECCCCCCCCchHHHHHHHHh
Confidence            9998754332 222211       2677899999999999753 22 4578999999998752    3788999999999


Q ss_pred             CCeEEeechHHHHHHhcCC--CCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCccccc-ccC
Q psy12107        155 KPTILFVVPSLLLFLASHP--AVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYT-RFA  231 (334)
Q Consensus       155 ~~t~l~~~p~~l~~l~~~~--~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~-~~~  231 (334)
                      ++|++...|.+++.+....  .....++++||.+++||+++++++.+++.+.++. ++.+.+.||+||++...... ...
T Consensus       356 ~vt~~~~~p~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~-~~~~~~~yG~TE~~~~~~~~~~~~  434 (652)
T TIGR01217       356 GATLFGTSAKYVMACRKAGVHPARTHDLSALQCVASTGSPLPPDGFRWVYDEIKA-DVWLASISGGTDICSCFAGANPTL  434 (652)
T ss_pred             CCeEEecCHHHHHHHHhcCCCccccCChhheeEEEeecCCCCHHHHHHHHHHhCC-CceEEeccCHHHHhccccCCCCCC
Confidence            9999988888887776532  1234678999999999999999999999999875 56788999999964322211 000


Q ss_pred             C-------------------CCc--cccCcccc--------ccccccCCccccc--cc-cC-CCCceecCceEEEecCCc
Q psy12107        232 I-------------------PEA--KLGSTGQL--------VMLGYLKNEEATK--ET-VD-SEGWLHTGDVAYYDEDGY  278 (334)
Q Consensus       232 ~-------------------~~~--~~~~~G~~--------~~~gy~~~~~~~~--~~-~~-~~~~~~TGD~~~~~~dg~  278 (334)
                      .                   ...  ..+..|++        ++.|||++++.+.  .. |. .+|||+|||+|++|+||+
T Consensus       435 ~~~~g~~g~p~~g~~v~ivd~~g~~~~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~dG~  514 (652)
T TIGR01217       435 PVHIGEIQAPGLGTAVQSWDPEGKPVTGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTPRGG  514 (652)
T ss_pred             CCcCCccCCCcCCCceEEECCCCCCCCCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECCCCc
Confidence            0                   000  01334444        5689999998654  22 21 268999999999999999


Q ss_pred             EEEEccCCceEEEcCEEee------------------------------------------------------------e
Q psy12107        279 FYIVDRTKELIKVKGNQVA------------------------------------------------------------P  298 (334)
Q Consensus       279 ~~~~GR~~d~i~~~G~~i~------------------------------------------------------------~  298 (334)
                      ++++||.||+||++|++|+                                                            +
T Consensus       515 l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~~~~~~~l~~~~~~~l~~  594 (652)
T TIGR01217       515 IVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDALLDRIKRTIRAGLSP  594 (652)
T ss_pred             EEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCC
Confidence            9999999999999999999                                                            5


Q ss_pred             eeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        299 YKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       299 ~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                      +++|.. |+++++||+|++|||+|+.||+.+.+
T Consensus       595 ~~~P~~-i~~v~~lP~T~sGKi~r~~Lr~~~~~  626 (652)
T TIGR01217       595 RHVPDE-IIEVPGIPHTLTGKRVEVAVKRVLQG  626 (652)
T ss_pred             CcCCCE-EEECCCCCCCCCccChHHHHHHHHcC
Confidence            566776 99999999999999999999998744

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=5.7e-43  Score=329.58  Aligned_cols=283  Identities=22%  Similarity=0.344  Sum_probs=226.6

Q ss_pred             cchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchh
Q psy12107         38 FGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF  117 (334)
Q Consensus        38 ~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~  117 (334)
                      ..+++++.......+.....++++++++|||||||.||+|+++|+++..+.......+       ....++++++.+|++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~s~~~l~~~~~~~~~~~-------~~~~~~~~l~~~p~~  233 (536)
T PRK10946        161 HSLDDAINHPAEDFTATPSPADEVAFFQLSGGSTGTPKLIPRTHNDYYYSVRRSVEIC-------GFTPQTRYLCALPAA  233 (536)
T ss_pred             ccHHHHhhCcccccccCCCCCCCeEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhc-------CCCCCceEEEecCcc
Confidence            3455555322222222345678999999999999999999999999988776554433       256789999999999


Q ss_pred             hhhHHHH-HHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCC--CCCccccccceeeeecCCCCC
Q psy12107        118 HIYGFNG-ILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHP--AVTPEHLASIREVTCGAAPAT  194 (334)
Q Consensus       118 ~~~~~~~-~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~--~~~~~~~~~lr~v~~~G~~l~  194 (334)
                      |.+++.. .++.++..|+++++.+.+++..+++.++++++|++.++|+++..|++..  ......++++|.+++||++++
T Consensus       234 h~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~l~  313 (536)
T PRK10946        234 HNYPMSSPGALGVFLAGGTVVLAPDPSATLCFPLIEKHQVNVTALVPPAVSLWLQAIAEGGSRAQLASLKLLQVGGARLS  313 (536)
T ss_pred             ccccchhhhHHHHhhcCcEEEECCCCCHHHHHHHHHHhCCcEEEeChHHHHHHHhhhcccCccccccceeEEEECCCCCC
Confidence            9888654 3677889999999988889999999999999999999999999998752  223355778999999999999


Q ss_pred             HHHHHHHHHHhccCCCceeeccCCCCCCCcccccccC------------------------CCCccccCcccc------c
Q psy12107        195 KSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA------------------------IPEAKLGSTGQL------V  244 (334)
Q Consensus       195 ~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~------------------------~~~~~~~~~G~~------~  244 (334)
                      +++.+.+.+.+++   ++++.||+||++.........                        ......+..|++      +
T Consensus       314 ~~~~~~~~~~~g~---~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~  390 (536)
T PRK10946        314 ETLARRIPAELGC---QLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEVGRLMTRGPYT  390 (536)
T ss_pred             HHHHHHHHHhcCC---eEEEeecccccceeeecCCCccccccccCCcccCCCceEEEECCCCCCCCCCCccEEEEecCcc
Confidence            9999999998864   799999999975432211000                        001122333433      7


Q ss_pred             cccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee---------------------------
Q psy12107        245 MLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA---------------------------  297 (334)
Q Consensus       245 ~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~---------------------------  297 (334)
                      +.||+++++.+...|..++||+|||++++|+||++++.||.+|+++.+|++|+                           
T Consensus       391 ~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~  470 (536)
T PRK10946        391 FRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELM  470 (536)
T ss_pred             chhhcCCcccchhhcccCCceecCceEEECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCccc
Confidence            89999999999999988999999999999999999999999999999999988                           


Q ss_pred             -----------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 -----------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 -----------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                                   +++.|.. +.+++++|+|++||++|++|++.+.+
T Consensus       471 g~~~~a~vv~~~~~~~~~l~~~~~~~~l~~~~~P~~-~~~~~~iP~t~~GKv~r~~L~~~~~~  532 (536)
T PRK10946        471 GEKSCAFLVVKEPLKAVQLRRFLREQGIAEFKLPDR-VECVDSLPLTAVGKVDKKQLRQWLAS  532 (536)
T ss_pred             CceEEEEEEeCCCCCHHHHHHHHHhCCccccccCcE-EEEeccCCCCCCCcccHHHHHHHHHh
Confidence                                         3445555 99999999999999999999998654

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.5e-43  Score=328.36  Aligned_cols=265  Identities=29%  Similarity=0.428  Sum_probs=222.4

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++++|||||||.||+|+++|+++..........+       ....+++++...|++|.+++....+.++..|+
T Consensus       145 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-------~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~  217 (497)
T PRK06145        145 AVAPTDLVRLMYTSGTTDRPKGVMHSYGNLHWKSIDHVIAL-------GLTASERLLVVGPLYHVGAFDLPGIAVLWVGG  217 (497)
T ss_pred             CCCccceEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhh-------CCCCCcEEEEecCchhHhHHHHHHHHHHhccC
Confidence            45678999999999999999999999999876544333222       25678899999999999988776677889999


Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceee
Q psy12107        135 HMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ  214 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~  214 (334)
                      ++++.+.+++..+++.++++++|++.++|+++..++........+++++|.+++||+++++++.+.+.+.|+  ++++++
T Consensus       218 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~~~--~~~v~~  295 (497)
T PRK06145        218 TLRIHREFDPEAVLAAIERHRLTCAWMAPVMLSRVLTVPDRDRFDLDSLAWCIGGGEKTPESRIRDFTRVFT--RARYID  295 (497)
T ss_pred             EEEECCcCCHHHHHHHHHHhCCeEEEehHHHHHHHHcCCCccccccccceEEEecCCCCCHHHHHHHHHHcC--CCceEE
Confidence            999988899999999999999999999999999998876655667889999999999999999999999997  568999


Q ss_pred             ccCCCCCCCcccccccCC------------------------CCccccCcccc------ccccccCCccccccccCCCCc
Q psy12107        215 GYGMTETSPCTLYTRFAI------------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGW  264 (334)
Q Consensus       215 ~YG~tE~g~~~~~~~~~~------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~  264 (334)
                      .||+||++...+......                        .....+..|++      ++.||+++++.+...| .++|
T Consensus       296 ~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~-~~~~  374 (497)
T PRK06145        296 AYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAF-YGDW  374 (497)
T ss_pred             eecCcccCCcceeccCccccccCCCcccCCCCceEEEECCCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHH-hCCC
Confidence            999999986433211100                        00112333443      6788999999998888 5899


Q ss_pred             eecCceEEEecCCcEEEEccCCceEEEcCEEee-----------------------------------------------
Q psy12107        265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-----------------------------------------------  297 (334)
Q Consensus       265 ~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-----------------------------------------------  297 (334)
                      |+|||++++++||+++++||.+|+||.+|++|+                                               
T Consensus       375 ~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  454 (497)
T PRK06145        375 FRSGDVGYLDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEA  454 (497)
T ss_pred             eeccceEEEcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCCHHH
Confidence            999999999999999999999999999999999                                               


Q ss_pred             ----------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhc
Q psy12107        298 ----------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGT  330 (334)
Q Consensus       298 ----------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~  330 (334)
                                +++.|.. ++++++||+|++||++|++|++++.
T Consensus       455 l~~~~~~~l~~~~~p~~-i~~v~~iP~t~~GKi~r~~l~~~~~  496 (497)
T PRK06145        455 LDRHCRQRLASFKVPRQ-LKVRDELPRNPSGKVLKRVLRDELN  496 (497)
T ss_pred             HHHHHHHhhhcCCCCCE-EEEeccCCCCCcccccHHHHHHHhc
Confidence                      4445665 9999999999999999999999764

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=8.7e-43  Score=327.44  Aligned_cols=316  Identities=32%  Similarity=0.535  Sum_probs=254.8

Q ss_pred             cchhhHHHHHHhhhCCCCceEEEEcCCCC--CCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcc
Q psy12107          4 IPQLLEVGTKIGATLPNFRGTIVVGGEHD--KSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSH   81 (334)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~   81 (334)
                      +.+..+.+..+.+.++..+.++++++...  .......+.+++............+++++++++|||||||.||+|.++|
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~PK~v~~t~  189 (521)
T PRK06187        110 DSEFVPLLAAILPQLPTVRTVIVEGDGPAAPLAPEVGEYEELLAAASDTFDFPDIDENDAAAMLYTSGTTGHPKGVVLSH  189 (521)
T ss_pred             cchHHHHHHHHhhccCCccEEEEecCccccccccccccHHHHhhcCCccCCCCCCCccceEEEEECCCCCCCCceEEeeh
Confidence            34556667777777887888888765431  1234567888775433333334567789999999999999999999999


Q ss_pred             hHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEee
Q psy12107         82 NNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFV  161 (334)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~  161 (334)
                      +++..........+       ....++++++..|++|.+++... +.++..|+++++.+.+++..+++.++++++|.+++
T Consensus       190 ~~l~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~~~~~~-~~~l~~G~~~v~~~~~~~~~~~~~l~~~~~t~l~~  261 (521)
T PRK06187        190 RNLFLHSLAVCAWL-------KLSRDDVYLVIVPMFHVHAWGLP-YLALMAGAKQVIPRRFDPENLLDLIETERVTFFFA  261 (521)
T ss_pred             HHHHHHHHHHHHhh-------CCCCCCEEEEeCCchHHhhHHHH-HHHHHhCCEEEecCCCCHHHHHHHHHHhCCeEEEc
Confidence            99887766555433       36788999999999999998874 44899999999988889999999999999999999


Q ss_pred             chHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCCC--------
Q psy12107        162 VPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP--------  233 (334)
Q Consensus       162 ~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~--------  233 (334)
                      +|+++..|.+........++++|.+++||+++++++.+.+.+.|++   ++++.||+||++.+.........        
T Consensus       262 ~p~~~~~l~~~~~~~~~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~---~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~  338 (521)
T PRK06187        262 VPTIWQMLLKAPRAYFVDFSSLRLVIYGGAALPPALLREFKEKFGI---DLVQGYGMTETSPVVSVLPPEDQLPGQWTKR  338 (521)
T ss_pred             hHHHHHHHHcCcCCCccCcchhhEEEEcCcCCCHHHHHHHHHHhCc---chheeeccCccCcccccCCcccccccccccC
Confidence            9999999998877666788899999999999999999999999854   79999999999865443211100        


Q ss_pred             --------------------Cccc--cCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccC
Q psy12107        234 --------------------EAKL--GSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRT  285 (334)
Q Consensus       234 --------------------~~~~--~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~  285 (334)
                                          +...  +..|++      ++.||+++++.+...| .++||+|||+++++++|++++.||.
T Consensus       339 ~~~G~~~~~~~~~i~~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~-~~~~~~tGD~~~~~~~g~~~~~GR~  417 (521)
T PRK06187        339 RSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETI-DGGWLHTGDVGYIDEDGYLYITDRI  417 (521)
T ss_pred             CccccccCCeEEEEECCCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHh-hCCceeccceEEEcCCCCEEEeecc
Confidence                                0111  444555      5678999988888887 5779999999999999999999999


Q ss_pred             CceEEEcCEEee---------------------------------------------------------eeeeccCcEEE
Q psy12107        286 KELIKVKGNQVA---------------------------------------------------------PYKKLAGGVKF  308 (334)
Q Consensus       286 ~d~i~~~G~~i~---------------------------------------------------------~~~~~~~~i~~  308 (334)
                      +|+++.+|.+++                                                         ++..|.. +++
T Consensus       418 ~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~p~~-i~~  496 (521)
T PRK06187        418 KDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFLRGRLAKFKLPKR-IAF  496 (521)
T ss_pred             cceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHHHHhccCCCCceE-EEE
Confidence            999999999999                                                         2334445 889


Q ss_pred             eecCCCCCCchhhHHHHhhhhcCC
Q psy12107        309 LETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       309 v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                      +++||+|++||++|++|++.+++.
T Consensus       497 v~~~P~t~~gK~~r~~l~~~~~~~  520 (521)
T PRK06187        497 VDELPRTSVGKILKRVLREQYAEG  520 (521)
T ss_pred             ccCCCCCCCCCeeHHHHHHHHhcC
Confidence            999999999999999999998765

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.4e-43  Score=334.37  Aligned_cols=313  Identities=21%  Similarity=0.285  Sum_probs=230.0

Q ss_pred             HHHHHHhhhC-CCCceEEEEcCCCCC----CCCccchhhhhcCCC-CCCCCCCCCCCCEEEEecCCCCCCCchhhhhcch
Q psy12107          9 EVGTKIGATL-PNFRGTIVVGGEHDK----SKNIFGFKQLVTSQP-PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHN   82 (334)
Q Consensus         9 ~~~~~~~~~~-~~~~~ii~~~~~~~~----~~~~~~~~~ll~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~   82 (334)
                      +.+.++...+ +..+.+++++.....    ......|.++..... ...+...++++++++|+|||||||.||||+++|+
T Consensus       177 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~il~TSGTTG~PKgV~~~~~  256 (629)
T PRK10524        177 PLLDEAIALAQHKPRHVLLVDRGLAPMARVAGRDVDYATLRAQHLGARVPVEWLESNEPSYILYTSGTTGKPKGVQRDTG  256 (629)
T ss_pred             HHHHHHHHhcCCCCCEEEEEeCCCCCcCcccCCcccHHHHHhcCCCCCCCceeeCCCCceEEEeecCCCCCCceEEECCc
Confidence            4444444433 345567766532110    112345666653221 1122233567899999999999999999999999


Q ss_pred             HHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcC----CCCHHHHHHHHHHcCCeE
Q psy12107         83 NCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP----KFTPETYIECVVKYKPTI  158 (334)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~----~~~~~~~~~~i~~~~~t~  158 (334)
                      ++............      +..++|++++..|++|+.+....++.++..|+++++.+    .+++..+++.|+++++|+
T Consensus       257 ~~~~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~v~~~g~~~~~~~~~~~~~i~~~~vt~  330 (629)
T PRK10524        257 GYAVALATSMDTIF------GGKAGETFFCASDIGWVVGHSYIVYAPLLAGMATIMYEGLPTRPDAGIWWRIVEKYKVNR  330 (629)
T ss_pred             HHHHHHHHHHHHhc------CCCCCCEEEEcCCCCeeccchHHHHHHHhCCCEEEEECCCCCCCChHHHHHHHHHcCceE
Confidence            87654433222111      25678999999999999887766888999999998875    357899999999999999


Q ss_pred             EeechHHHHHHhcCCC--CCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCccc-cccc-C---
Q psy12107        159 LFVVPSLLLFLASHPA--VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTL-YTRF-A---  231 (334)
Q Consensus       159 l~~~p~~l~~l~~~~~--~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~-~~~~-~---  231 (334)
                      ++++|++++.|.+...  ....++++||.+++||+++++++.+++.+.++.   ++++.||+||++..+. .... .   
T Consensus       331 ~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~---~v~~~YG~TE~~~~~~~~~~~~~~~~  407 (629)
T PRK10524        331 MFSAPTAIRVLKKQDPALLRKHDLSSLRALFLAGEPLDEPTASWISEALGV---PVIDNYWQTETGWPILAIARGVEDRP  407 (629)
T ss_pred             EEeCHHHHHHHHhcCcccccccChhheeEEEEeCCCCCHHHHHHHHHhcCC---CeEeccccccccchhhcCCCCcccCc
Confidence            9999999999877543  234578899999999999999999999999864   7999999999973221 1100 0   


Q ss_pred             ----------------------CCCccccCcccc---------ccccccCCccccccccC---CCCceecCceEEEecCC
Q psy12107        232 ----------------------IPEAKLGSTGQL---------VMLGYLKNEEATKETVD---SEGWLHTGDVAYYDEDG  277 (334)
Q Consensus       232 ----------------------~~~~~~~~~G~~---------~~~gy~~~~~~~~~~~~---~~~~~~TGD~~~~~~dg  277 (334)
                                            ..+...+..|++         ++.+|+++++.+.+.+.   .++||+|||++++++||
T Consensus       408 ~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~dG  487 (629)
T PRK10524        408 TRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDADG  487 (629)
T ss_pred             CCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcCCC
Confidence                                  001112333433         35678888876665432   46899999999999999


Q ss_pred             cEEEEccCCceEEEcCEEee------------------------------------------------------------
Q psy12107        278 YFYIVDRTKELIKVKGNQVA------------------------------------------------------------  297 (334)
Q Consensus       278 ~~~~~GR~~d~i~~~G~~i~------------------------------------------------------------  297 (334)
                      +++++||.||+||++|++|+                                                            
T Consensus       488 ~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~~~~~~~~~~i~~~~  567 (629)
T PRK10524        488 YYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADREARLALEKEIMALV  567 (629)
T ss_pred             cEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccccchHHHHHHHHHHH
Confidence            99999999999999999999                                                            


Q ss_pred             -----eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 -----PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 -----~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                           +++.|.. |+++++||+|++||++|+.|++...+
T Consensus       568 ~~~l~~~~~P~~-i~~v~~lP~T~sGKi~R~~L~~~~~~  605 (629)
T PRK10524        568 DSQLGAVARPAR-VWFVSALPKTRSGKLLRRAIQAIAEG  605 (629)
T ss_pred             HhhcCCCcCCCE-EEEcCCCCCCCCcchHHHHHHHHHcC
Confidence                 3334555 99999999999999999999998643

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1e-42  Score=327.93  Aligned_cols=255  Identities=27%  Similarity=0.443  Sum_probs=208.2

Q ss_pred             CCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEE
Q psy12107         57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHM  136 (334)
Q Consensus        57 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~  136 (334)
                      .++++++++|||||||.||+|+++|+++..+........       .....++++...|++|++++.. ++.++..|+++
T Consensus       194 ~~~~~~~il~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-------~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~g~~~  265 (537)
T PRK13382        194 TGRKGRVILLTSGTTGTPKGARRSGPGGIGTLKAILDRT-------PWRAEEPTVIVAPMFHAWGFSQ-LVLAASLACTI  265 (537)
T ss_pred             CCCCCeEEEECCCCCCCCCEEEeccchHHHHHHHHHHhh-------CCCCCCeEEEecChHhhhHHHH-HHHHHhcCcEE
Confidence            467899999999999999999999988876655444332       2457788999999999999865 78888899999


Q ss_pred             EEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCC--CccccccceeeeecCCCCCHHHHHHHHHHhccCCCceee
Q psy12107        137 ITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV--TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ  214 (334)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~--~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~  214 (334)
                      ++...++++.+++.|+++++|++.++|+++..|.+....  ...+++++|.+++||+++++++.+.|.+.++.   .+++
T Consensus       266 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~---~i~~  342 (537)
T PRK13382        266 VTRRRFDPEATLDLIDRHRATGLAVVPVMFDRIMDLPAEVRNRYSGRSLRFAAASGSRMRPDVVIAFMDQFGD---VIYN  342 (537)
T ss_pred             EECCCcCHHHHHHHHHHhCCEEEEehHHHHHHHHcCCchhcccCCccceeEEEEcCCCCCHHHHHHHHHHcCC---cEEe
Confidence            998889999999999999999999999999999876432  23456789999999999999999999999974   6999


Q ss_pred             ccCCCCCCCcccccccCC-----------------------CCccccCcccc------ccccccCCccccccccCCCCce
Q psy12107        215 GYGMTETSPCTLYTRFAI-----------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWL  265 (334)
Q Consensus       215 ~YG~tE~g~~~~~~~~~~-----------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~  265 (334)
                      .||+||++.++..+....                       .+...+..|++      ++.||+  ++.+.. + .+|||
T Consensus       343 ~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~~-~-~~g~~  418 (537)
T PRK13382        343 NYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVPTGEVGTIFVRNDTQFDGYT--SGSTKD-F-HDGFM  418 (537)
T ss_pred             cccccccCcceecChhHhccCCCCccccCcCcEEEEECCCCCCCCCCCeeEEEEEcCCcccCcc--ccchhh-c-cCCCE
Confidence            999999986554321110                       01112333443      678887  444433 3 37899


Q ss_pred             ecCceEEEecCCcEEEEccCCceEEEcCEEee------------------------------------------------
Q psy12107        266 HTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA------------------------------------------------  297 (334)
Q Consensus       266 ~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~------------------------------------------------  297 (334)
                      +|||++++++||+++++||.||+||.+|++|+                                                
T Consensus       419 ~TGDl~~~~~~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l  498 (537)
T PRK13382        419 ASGDVGYLDENGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETL  498 (537)
T ss_pred             eeCceEEEeCCCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCCHHHH
Confidence            99999999999999999999999999999999                                                


Q ss_pred             ---------eeeeccCcEEEeecCCCCCCchhhHHHHhh
Q psy12107        298 ---------PYKKLAGGVKFLETIPRNPAGKVLRNELKV  327 (334)
Q Consensus       298 ---------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~  327 (334)
                               +++.|.. ++++++||+|++||++|++|++
T Consensus       499 ~~~l~~~l~~~~~P~~-i~~v~~lP~t~~gK~~r~~L~~  536 (537)
T PRK13382        499 KQHVRDNLANYKVPRD-IVVLDELPRGATGKILRRELQA  536 (537)
T ss_pred             HHHHHHhccCCCCCcE-EEEeccCCCCCCCCCcHHhhCC
Confidence                     4556666 9999999999999999999975

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=100.00  E-value=2e-43  Score=340.69  Aligned_cols=285  Identities=27%  Similarity=0.406  Sum_probs=207.7

Q ss_pred             CcchhhHHHHHHhhhCCCCceEEEEcCCCCC---------CCCccchhhhhc-CCCCCCCCCCCCCCCEEEEecCCCCCC
Q psy12107          3 NIPQLLEVGTKIGATLPNFRGTIVVGGEHDK---------SKNIFGFKQLVT-SQPPDFQLPKISPNDLAMLPYSSGTTG   72 (334)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~---------~~~~~~~~~ll~-~~~~~~~~~~~~~~~~a~i~~TSGTTG   72 (334)
                      .+.++.+.+.++...++.+++||++++....         .....+|++++. ......+.....++|+++|+|||||||
T Consensus       184 ~~~~~~~~l~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~I~yTSGTTG  263 (696)
T PLN02387        184 CDSKQLKKLIDISSQLETVKRVIYMDDEGVDSDSSLSGSSNWTVSSFSEVEKLGKENPVDPDLPSPNDIAVIMYTSGSTG  263 (696)
T ss_pred             ECHHHHHHHHHHhhccCCceEEEEECCCCchhhhhhhccCCcEEEEHHHHHHhhccCCCCCCCCCccceEEEEecCCCCC
Confidence            3456677777777888999999998753211         112346777763 111111123446899999999999999


Q ss_pred             CchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCC--------H
Q psy12107         73 VPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFT--------P  144 (334)
Q Consensus        73 ~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~--------~  144 (334)
                      .||||++||+++.++.........      ...++|++++.+|++|++++.. ....+..|+++.......        +
T Consensus       264 ~PKGV~lth~~l~~~~~~~~~~~~------~~~~~d~~l~~lPl~Hi~~~~~-~~~~~~~g~~i~~g~~~~l~~~~~~~~  336 (696)
T PLN02387        264 LPKGVMMTHGNIVATVAGVMTVVP------KLGKNDVYLAYLPLAHILELAA-ESVMAAVGAAIGYGSPLTLTDTSNKIK  336 (696)
T ss_pred             CCCEEEEEcHHHHHHHHHHHhhcC------CCCCCCEEEEECcHHHHHHHHH-HHHHHHhCCEEEECChhhhcccccccc
Confidence            999999999999887765443221      2567899999999999999876 344566777776643211        2


Q ss_pred             HHHHHHHHHcCCeEEeechHHHHHHhcCCCCC---------------------------------c-------------c
Q psy12107        145 ETYIECVVKYKPTILFVVPSLLLFLASHPAVT---------------------------------P-------------E  178 (334)
Q Consensus       145 ~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~---------------------------------~-------------~  178 (334)
                      ..++..+++++||++.++|.++..|.+.....                                 .             .
T Consensus       337 ~~~~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (696)
T PLN02387        337 KGTKGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRA  416 (696)
T ss_pred             cCchhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHH
Confidence            34567899999999999999999886421000                                 0             0


Q ss_pred             cc-ccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCCC--------------------Cc--
Q psy12107        179 HL-ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP--------------------EA--  235 (334)
Q Consensus       179 ~~-~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~--------------------~~--  235 (334)
                      .+ +++|.+++||+++++++.+.++..+++   ++++.||+||++..++.....+.                    +.  
T Consensus       417 ~lg~~lr~i~~GGapl~~~~~~~~~~~~g~---~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~  493 (696)
T PLN02387        417 VLGGRIRFMLSGGAPLSGDTQRFINICLGA---PIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGY  493 (696)
T ss_pred             HhCCcEEEEEEcCCCCCHHHHHHHHHHcCC---CeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCc
Confidence            01 489999999999999999888888864   79999999999765433221110                    00  


Q ss_pred             ----cccCcccc------ccccccCCcccccccc--CCCC--ceecCceEEEecCCcEEEEccCCceEEE-cCEEee
Q psy12107        236 ----KLGSTGQL------VMLGYLKNEEATKETV--DSEG--WLHTGDVAYYDEDGYFYIVDRTKELIKV-KGNQVA  297 (334)
Q Consensus       236 ----~~~~~G~~------~~~gy~~~~~~~~~~~--~~~~--~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~i~  297 (334)
                          .++..|++      ++.|||++|+.|.+.|  +.+|  ||+|||+|++|+||+++++||+||+||+ +|++|+
T Consensus       494 ~~~~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~  570 (696)
T PLN02387        494 LISDKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVS  570 (696)
T ss_pred             ccCCCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEc
Confidence                01112443      7899999999999998  3345  9999999999999999999999999998 599999

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-43  Score=341.92  Aligned_cols=260  Identities=24%  Similarity=0.387  Sum_probs=213.6

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhcc-CccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVH-PDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ...++++++++|||||||.||||+++|+++..+...... .+       .....+++++..|++|.+++...++.++..|
T Consensus       141 ~~~~~~~a~il~TSGSTG~PKgV~~sh~~~~~~~~~~~~~~~-------~~~~~d~~l~~~~~~~~~~~~~~~~~~l~~G  213 (705)
T PRK06060        141 PMGGDALAYATYTSGTTGPPKAAIHRHADPLTFVDAMCRKAL-------RLTPEDTGLCSARMYFAYGLGNSVWFPLATG  213 (705)
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEEccccHHHHHHHHHHHhh-------CCCCcceeEEeccchhhcchhHHHHHHHhcC
Confidence            346789999999999999999999999999877654422 11       2567889999999999988876678889999


Q ss_pred             cEEEEcC-CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCce
Q psy12107        134 MHMITIP-KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITI  212 (334)
Q Consensus       134 ~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i  212 (334)
                      +++++.+ .+++..+...++++++|+++++|+++..|++...  ...+++||.+++||+++++++.+++.+.|+  ++++
T Consensus       214 ~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~~~~~slr~i~~gGe~l~~~~~~~~~~~~~--~~~~  289 (705)
T PRK06060        214 GSAVINSAPVTPEAAAILSARFGPSVLYGVPNFFARVIDSCS--PDSFRSLRCVVSAGEALELGLAERLMEFFG--GIPI  289 (705)
T ss_pred             CEEEEeCCCCCHHHHHHHHHhcCCeEEeeHHHHHHHHHHhcc--cccccceeEEEEecCcCCHHHHHHHHHHcC--CCce
Confidence            9998876 4788999999999999999999999999987543  345778999999999999999999999997  5689


Q ss_pred             eeccCCCCCCCcccccccCC----------------------CCccccCcccc------ccccccCCccccccccCCCCc
Q psy12107        213 RQGYGMTETSPCTLYTRFAI----------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGW  264 (334)
Q Consensus       213 ~~~YG~tE~g~~~~~~~~~~----------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~  264 (334)
                      +|.||+||++..+.......                      .....+..|++      ++.||+++++.+.   ..++|
T Consensus       290 ~~~YG~tE~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~---~~~~~  366 (705)
T PRK06060        290 LDGIGSTEVGQTFVSNRVDEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPV---ANEGW  366 (705)
T ss_pred             EeeeeccccCceEEeccCCCCCcCcccccCCCcEEEEECCCCCCCCCCCceEEEEccchhhhhhhCCCcccc---cCCCc
Confidence            99999999985433221100                      01122334444      6778999998653   35799


Q ss_pred             eecCceEEEecCCcEEEEccCCceEEEcCEEee-----------------------------------------------
Q psy12107        265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-----------------------------------------------  297 (334)
Q Consensus       265 ~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-----------------------------------------------  297 (334)
                      |+|||+|++++||+++++||.||+||++|++|+                                               
T Consensus       367 ~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~  446 (705)
T PRK06060        367 LDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSV  446 (705)
T ss_pred             EECCeeEEECCCceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChHH
Confidence            999999999999999999999999999999999                                               


Q ss_pred             -------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhh
Q psy12107        298 -------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFG  329 (334)
Q Consensus       298 -------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~  329 (334)
                                   ++++|.. ++++++||+|++|||+|++|++.+
T Consensus       447 ~~~i~~~l~~~L~~~~~P~~-i~~v~~iP~t~~GKidr~~L~~~~  490 (705)
T PRK06060        447 MRDLHRGLLNRLSAFKVPHR-FAVVDRLPRTPNGKLVRGALRKQS  490 (705)
T ss_pred             HHHHHHHHHHhCCCCcCCcE-EEEeecCCCCcchhhHHHHHHhhc
Confidence                         4456666 999999999999999999999864

>KOG1180|consensus

Probab=100.00  E-value=3.1e-44  Score=313.73  Aligned_cols=286  Identities=25%  Similarity=0.351  Sum_probs=220.9

Q ss_pred             CCCcchhhHHHHHHhhhCCCCceEEEEcCCC-C-C----------CCCccchhhhh--cCCCCCCCCCCCCCCCEEEEec
Q psy12107          1 MCNIPQLLEVGTKIGATLPNFRGTIVVGGEH-D-K----------SKNIFGFKQLV--TSQPPDFQLPKISPNDLAMLPY   66 (334)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~-~-~----------~~~~~~~~~ll--~~~~~~~~~~~~~~~~~a~i~~   66 (334)
                      |+.|.++++++...++.++.+|+||.++..+ + .          .-..++|++++  +.+....+ .+..|+|+|+|||
T Consensus       166 i~T~~~LL~kl~~~l~~~~~vk~II~~d~id~~~~~~~v~~i~~p~i~i~Sf~~v~~lG~~~~~~~-~~P~p~Dia~IMY  244 (678)
T KOG1180|consen  166 IFTDSELLPKLKAPLKQAKTVKHIIYFDPIDYDAAKDDVNSIVRPDIKIISFDDVEKLGKENEIPP-HPPKPSDIACIMY  244 (678)
T ss_pred             EEeCHHHHHHHHHHHhccCceeEEEEecCCCCccchhhhhhhccCCeEEEEHHHHHhhCCcCCCCC-CCCCCCceEEEEE
Confidence            3567889999999999999999999998411 0 0          12357899998  33333222 3337899999999


Q ss_pred             CCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHH
Q psy12107         67 SSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPET  146 (334)
Q Consensus        67 TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~  146 (334)
                      ||||||.||||+++|+|+++.+........      .+.+.|+++..+|+.|++.+.+ =+.++..|+++-..+..+.-+
T Consensus       245 TSGSTG~PKGVml~H~NiVA~~~G~~~~v~------~lg~~D~yi~yLPLAHIlEl~a-E~~~ft~G~~iGY~S~~TLtd  317 (678)
T KOG1180|consen  245 TSGSTGLPKGVMLTHSNIVAGVTGVGENVP------ELGPKDRYIAYLPLAHILELTA-ELVCFTWGGRIGYSSPLTLTD  317 (678)
T ss_pred             cCCCCCCCceEEEecccHHhhhhhhcccCc------ccCCCceEEEechHHHHHHHHH-HHHHHhhCCEeecCCcceecc
Confidence            999999999999999999998876665543      2779999999999999999998 478899999998876532222


Q ss_pred             HH--------HHHHHcCCeEEeechHHHHHHhcC--------CC-----------------C-Ccc--------c-----
Q psy12107        147 YI--------ECVVKYKPTILFVVPSLLLFLASH--------PA-----------------V-TPE--------H-----  179 (334)
Q Consensus       147 ~~--------~~i~~~~~t~l~~~p~~l~~l~~~--------~~-----------------~-~~~--------~-----  179 (334)
                      --        -.+...+||++.++|..+.++...        +.                 . ...        -     
T Consensus       318 ts~ki~kg~kGD~~~lkPTiM~~VpAV~drVrKgVl~kV~~~~~~~k~lF~~aY~~K~~~~~~~g~~s~~ld~lVFkKIr  397 (678)
T KOG1180|consen  318 TSSKIKKGCKGDLTELKPTIMAAVPAVMDRVRKGVLSKVNAMPGLQKKLFWTAYERKLSLIERNGPGSPLLDALVFKKIR  397 (678)
T ss_pred             cchhhccCCcCccccccchhhhhhHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHH
Confidence            21        234567999999999998876421        00                 0 000        0     


Q ss_pred             ---cccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCCC-----------------------
Q psy12107        180 ---LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP-----------------------  233 (334)
Q Consensus       180 ---~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~-----------------------  233 (334)
                         =..||.+++||++|+++..+++.-++.+   ++.++||.||++...+.....+.                       
T Consensus       398 ~~lGG~lR~~LsGGapLS~dtQrF~nic~C~---Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgG  474 (678)
T KOG1180|consen  398 ALLGGNLRYILSGGAPLSPDTQRFMNICFCC---PVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGG  474 (678)
T ss_pred             HHhCCceEEEEeCCCCCCHHHHHHHHHhccc---cccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcC
Confidence               0279999999999999999999999875   79999999998765543322221                       


Q ss_pred             --------CccccCccccccccccCCccccccccCC-CC--ceecCceEEEecCCcEEEEccCCceEEE-cCEEee
Q psy12107        234 --------EAKLGSTGQLVMLGYLKNEEATKETVDS-EG--WLHTGDVAYYDEDGYFYIVDRTKELIKV-KGNQVA  297 (334)
Q Consensus       234 --------~~~~~~~G~~~~~gy~~~~~~~~~~~~~-~~--~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~i~  297 (334)
                              .+...-.|..++.||+++++.|++.|.. +|  ||+|||+|++.+||++.+++|++|++|+ +|+.|+
T Consensus       475 Y~~~~~PPrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIs  550 (678)
T KOG1180|consen  475 YFAKNKPPRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYIS  550 (678)
T ss_pred             ccCCCCCCCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceee
Confidence                    1111223445899999999999999987 88  9999999999999999999999999999 699999

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-42  Score=332.06  Aligned_cols=266  Identities=23%  Similarity=0.322  Sum_probs=216.8

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++|+|||||||.||+|+++|+++..+.......+       ...+.+++++.+|++|.+++...++.++..|+
T Consensus       195 ~~~~~~~a~il~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-------~l~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~  267 (600)
T PRK08279        195 GVTAKDTAFYIYTSGTTGLPKAAVMSHMRWLKAMGGFGGLL-------RLTPDDVLYCCLPLYHNTGGTVAWSSVLAAGA  267 (600)
T ss_pred             CCCccccEEEEEcCCCCCCCcEEEEeHHHHHHHHHHHHHhc-------CCCCCcEEEEecCchhhhhHHHHHHHHHhcCc
Confidence            45678999999999999999999999999998877655443       36788999999999999999887778889999


Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceee
Q psy12107        135 HMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ  214 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~  214 (334)
                      ++++.+.+++..+++.++++++|++.++|++++.+.+..........++|.+  +|+.+++++.+.+.+.++.  ..+++
T Consensus       268 ~~v~~~~~~~~~~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~~~~~~l~~~--~g~~l~~~~~~~~~~~~~~--~~l~~  343 (600)
T PRK08279        268 TLALRRKFSASRFWDDVRRYRATAFQYIGELCRYLLNQPPKPTDRDHRLRLM--IGNGLRPDIWDEFQQRFGI--PRILE  343 (600)
T ss_pred             EEEEcCCCCHHHHHHHHHHhcceEEeehHHHHHHHHhCCCCccccCcceeEE--ecCCCCHHHHHHHHHHhCc--ceeee
Confidence            9999988999999999999999999999999999987654444445567754  4778999999999999983  36999


Q ss_pred             ccCCCCCCCccccccc-----C---C--------------------------CCccccCcccc--------ccccccCCc
Q psy12107        215 GYGMTETSPCTLYTRF-----A---I--------------------------PEAKLGSTGQL--------VMLGYLKNE  252 (334)
Q Consensus       215 ~YG~tE~g~~~~~~~~-----~---~--------------------------~~~~~~~~G~~--------~~~gy~~~~  252 (334)
                      .||+||++........     +   .                          .....+..|++        ++.|| +++
T Consensus       344 ~YG~tE~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~  422 (600)
T PRK08279        344 FYAASEGNVGFINVFNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDP  422 (600)
T ss_pred             eecccccceeecccCCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccccccc-CCc
Confidence            9999998743221000     0   0                          00122333432        67899 888


Q ss_pred             cccccccC------CCCceecCceEEEecCCcEEEEccCCceEEEcCEEee-----------------------------
Q psy12107        253 EATKETVD------SEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-----------------------------  297 (334)
Q Consensus       253 ~~~~~~~~------~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-----------------------------  297 (334)
                      +.+...|.      .++||+|||+|++++||++++.||.||+||++|++|+                             
T Consensus       423 ~~t~~~~~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~  502 (600)
T PRK08279        423 EASEKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDG  502 (600)
T ss_pred             hhhHHHHhhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCC
Confidence            88776652      3689999999999999999999999999999999999                             


Q ss_pred             -----------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCCC
Q psy12107        298 -----------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPK  333 (334)
Q Consensus       298 -----------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~  333 (334)
                                                   ++++|.. |+++++||+|++||++|++|+++..+.+
T Consensus       503 ~~~~~~vv~~~~~~~~~~~l~~~l~~~L~~~~~P~~-i~~v~~lP~t~~GKi~r~~L~~~~~~~~  566 (600)
T PRK08279        503 RAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPLF-VRLVPELETTGTFKYRKVDLRKEGFDPS  566 (600)
T ss_pred             ccceeEEEecCCccCCHHHHHHHHHhhCccccCCeE-EEeecCCCCCcchhhhHHHHhhcCCCcc
Confidence                                         5666766 9999999999999999999999887653

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=3.1e-43  Score=332.76  Aligned_cols=263  Identities=25%  Similarity=0.443  Sum_probs=211.2

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ...+++++++|+|||||||.||+|+++|+++..++......+       ...+.++.++.+|++|++++        ..|
T Consensus       169 ~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-------~~~~~~~~~~~~pl~~~~~~--------~~g  233 (552)
T PRK09274        169 ADLAPDDMAAILFTSGSTGTPKGVVYTHGMFEAQIEALREDY-------GIEPGEIDLPTFPLFALFGP--------ALG  233 (552)
T ss_pred             CCCCCCCeEEEEECCCCCCCCceEEecHHHHHHHHHHHHHHh-------CCCCCceeeeccCHHHhhhh--------hhC
Confidence            345678999999999999999999999999988776554433       25678899999999876543        347


Q ss_pred             cEEEEcC-------CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhc
Q psy12107        134 MHMITIP-------KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQ  206 (334)
Q Consensus       134 ~~~~~~~-------~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~  206 (334)
                      .++++.+       .+++..+++.|+++++|+++++|+++..|.+.......++++||.+++||+++++++.+++.+.|+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~  313 (552)
T PRK09274        234 MTSVIPDMDPTRPATVDPAKLFAAIERYGVTNLFGSPALLERLGRYGEANGIKLPSLRRVISAGAPVPIAVIERFRAMLP  313 (552)
T ss_pred             CeEEecCcccccccccCHHHHHHHHHHcCCeEEeccHHHHHHHHHHhhhcCCCCchhhEEEecCCcCCHHHHHHHHHHcC
Confidence            7776643       368899999999999999999999999998876555668899999999999999999999999997


Q ss_pred             cCCCceeeccCCCCCCCcccccccC------------------C-----------------------CCccccCcccc--
Q psy12107        207 REDITIRQGYGMTETSPCTLYTRFA------------------I-----------------------PEAKLGSTGQL--  243 (334)
Q Consensus       207 ~~~~~i~~~YG~tE~g~~~~~~~~~------------------~-----------------------~~~~~~~~G~~--  243 (334)
                      . ++++++.||+||++.+++.....                  .                       .+...+..|++  
T Consensus       314 ~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v  392 (552)
T PRK09274        314 P-DAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVV  392 (552)
T ss_pred             C-CceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEE
Confidence            4 46899999999988644321100                  0                       00112344554  


Q ss_pred             ----ccccccCCcccccccc--CCCC--ceecCceEEEecCCcEEEEccCCceEEEcCEEee------------------
Q psy12107        244 ----VMLGYLKNEEATKETV--DSEG--WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA------------------  297 (334)
Q Consensus       244 ----~~~gy~~~~~~~~~~~--~~~~--~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~------------------  297 (334)
                          ++.||+++++.+...+  +.+|  ||+|||+|++|+||+++++||.||+||++|++|+                  
T Consensus       393 ~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~  472 (552)
T PRK09274        393 AGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSA  472 (552)
T ss_pred             ecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeE
Confidence                6789999999988765  3456  9999999999999999999999999999999999                  


Q ss_pred             -----------------------------------------eeeeccCcEEEeecCCCC--CCchhhHHHHhhhhcCCC
Q psy12107        298 -----------------------------------------PYKKLAGGVKFLETIPRN--PAGKVLRNELKVFGTNPK  333 (334)
Q Consensus       298 -----------------------------------------~~~~~~~~i~~v~~lP~t--~~GKi~r~~l~~~~~~~~  333 (334)
                                                               ..+.|+. +.++++||+|  ++|||+|++|++++.+..
T Consensus       473 v~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~~~~~lP~t~~~~GKi~r~~L~~~~~~~~  550 (552)
T PRK09274        473 LVGVGVPGAQRPVLCVELEPGVACSKSALYQELRALAAAHPHTAGIER-FLIHPSFPVDIRHNAKIFREKLAVWAAKQL  550 (552)
T ss_pred             EEEeCCCCCceEEEEEEccCccccchHHHhhhhHHHHHhcCCCcceeE-EeccCCCCccccccccccHHHHHHHHHHhh
Confidence                                                     1122334 8899999999  799999999999876654

>PRK07638 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.2e-42  Score=323.95  Aligned_cols=260  Identities=23%  Similarity=0.360  Sum_probs=215.1

Q ss_pred             CCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEE
Q psy12107         57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHM  136 (334)
Q Consensus        57 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~  136 (334)
                      ..+++++|+|||||||.||+|+++|+++..+.......+       ....+|+++...|++|..++.. ++.++..|+++
T Consensus       141 ~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-------~~~~~d~~~~~~~l~~~~~l~~-~~~~l~~g~~~  212 (487)
T PRK07638        141 VQNAPFYMGFTSGSTGKPKAFLRAQQSWLHSFDCNVHDF-------HMKREDSVLIAGTLVHSLFLYG-AISTLYVGQTV  212 (487)
T ss_pred             CCCCcEEEEeCCCCCCCCcEEEEecHHHHHHHHHHHHhc-------CcCCCCEEEEeecchHHHHHHH-HHHHHccCcEE
Confidence            356789999999999999999999999987766554433       2567899999999999887654 68889999999


Q ss_pred             EEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeecc
Q psy12107        137 ITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGY  216 (334)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~Y  216 (334)
                      ++.+.+++..+++.|+++++|++.++|+++..|.+...    ...+.+.++++|+.+++++.+++.+.|+  ++++++.|
T Consensus       213 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----~~~~~~~~~~~G~~l~~~~~~~~~~~~~--~~~~~~~Y  286 (487)
T PRK07638        213 HLMRKFIPNQVLDKLETENISVMYTVPTMLESLYKENR----VIENKMKIISSGAKWEAEAKEKIKNIFP--YAKLYEFY  286 (487)
T ss_pred             EEcCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcC----cCCceeEEEEcCCCCCHHHHHHHHHHcC--CCeEEEEe
Confidence            99999999999999999999999999999999987632    2345566788999999999999999997  56899999


Q ss_pred             CCCCCCCcccccccCC-----------------------CCccccCcccc------ccccccCCccccccccCCCCceec
Q psy12107        217 GMTETSPCTLYTRFAI-----------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHT  267 (334)
Q Consensus       217 G~tE~g~~~~~~~~~~-----------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~T  267 (334)
                      |+||++.++.......                       .+...+..|++      ++.||+++++.+...+ .+|||+|
T Consensus       287 G~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g~~~T  365 (487)
T PRK07638        287 GASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELN-ADGWMTV  365 (487)
T ss_pred             cCCccCceEEecccccCCCCCCCCcccCCcEEEEECCCCCCCCCCCCeEEEEecccceeeecCCHHHHhhhc-cCCcEec
Confidence            9999987654332110                       01122333443      6789999988776655 6899999


Q ss_pred             CceEEEecCCcEEEEccCCceEEEcCEEee--------------------------------------------------
Q psy12107        268 GDVAYYDEDGYFYIVDRTKELIKVKGNQVA--------------------------------------------------  297 (334)
Q Consensus       268 GD~~~~~~dg~~~~~GR~~d~i~~~G~~i~--------------------------------------------------  297 (334)
                      ||++++|+||+++++||.+|+||++|.+|+                                                  
T Consensus       366 GDl~~~d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~l~~~~~~  445 (487)
T PRK07638        366 RDVGYEDEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKGSATKQQLKSFCLQ  445 (487)
T ss_pred             CccEeEcCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEECCCCHHHHHHHHHH
Confidence            999999999999999999999999999998                                                  


Q ss_pred             ---eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        298 ---PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       298 ---~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                         +++.|.. ++++++||+|++||++|++|++++.+.
T Consensus       446 ~l~~~~~p~~-i~~v~~iP~t~~GKv~r~~L~~~~~~~  482 (487)
T PRK07638        446 RLSSFKIPKE-WHFVDEIPYTNSGKIARMEAKSWIENQ  482 (487)
T ss_pred             HhhcccCCcE-EEEecccCCCCcccccHHHHHHHHhcc
Confidence               5566766 999999999999999999999987654

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-42  Score=325.96  Aligned_cols=309  Identities=26%  Similarity=0.421  Sum_probs=232.7

Q ss_pred             hhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCC-CCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHH
Q psy12107          7 LLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQP-PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCA   85 (334)
Q Consensus         7 ~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~   85 (334)
                      +.+.+..+.+..+..+.++.++...    ...++++++.... .........++++++|+|||||||.||+|+++|+++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~  189 (528)
T PRK07470        114 FPEHAAAVRAASPDLTHVVAIGGAR----AGLDYEALVARHLGARVANAAVDHDDPCWFFFTSGTTGRPKAAVLTHGQMA  189 (528)
T ss_pred             hHHHHHHHHhhCCcCceEEEeCCCc----ccccHHHHHhcCCCCCCCcccCCCCCeEEEEeCCCCCCCCcEEEEehhhHH
Confidence            3334444444445555666655322    2356777663221 1111234567899999999999999999999999986


Q ss_pred             HHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcC--CCCHHHHHHHHHHcCCeEEeech
Q psy12107         86 VNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP--KFTPETYIECVVKYKPTILFVVP  163 (334)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p  163 (334)
                      ............     .....|+++..+|++|.+++.. ++ .+..|+++++.+  .++++.+++.|+++++|++.++|
T Consensus       190 ~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P  262 (528)
T PRK07470        190 FVITNHLADLMP-----GTTEQDASLVVAPLSHGAGIHQ-LC-QVARGAATVLLPSERFDPAEVWALVERHRVTNLFTVP  262 (528)
T ss_pred             HHHHHHHHHhcc-----CCCcccEEEEeccchhHHHHHH-HH-HHhcCceEEEecccCcCHHHHHHHHHhcCCeEEechH
Confidence            544332221110     1457889999999999988865 34 456666666554  47899999999999999999999


Q ss_pred             HHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccC------------
Q psy12107        164 SLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA------------  231 (334)
Q Consensus       164 ~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~------------  231 (334)
                      ++++.+++.......+++++|.+++||+++++++.+++.+.++.   ++++.||+||++..+......            
T Consensus       263 ~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~---~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~  339 (528)
T PRK07470        263 TILKMLVEHPAVDRYDHSSLRYVIYAGAPMYRADQKRALAKLGK---VLVQYFGLGEVTGNITVLPPALHDAEDGPDARI  339 (528)
T ss_pred             HHHHHHHhCcCcCCCCCcceEEEEEcCCCCCHHHHHHHHHHhCc---HHHHhCCCcccCCceeecchhhcccccccccee
Confidence            99999988776566778899999999999999999999998874   799999999987644322100            


Q ss_pred             ------------------CCCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCc
Q psy12107        232 ------------------IPEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKE  287 (334)
Q Consensus       232 ------------------~~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d  287 (334)
                                        ..+...+..|++      ++.||+++++.+...| .++||+|||++++++||++++.||.||
T Consensus       340 ~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~-~~~~~~TGDl~~~~~~g~l~~~GR~dd  418 (528)
T PRK07470        340 GTCGFERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAF-RDGWFRTGDLGHLDARGFLYITGRASD  418 (528)
T ss_pred             eccCcccCCcEEEEECCCCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhh-cCCcEecceeEEEccCCeEEEeCCccc
Confidence                              001122333443      6789999999888877 589999999999999999999999999


Q ss_pred             eEEEcCEEee---------------------------------------------------------eeeeccCcEEEee
Q psy12107        288 LIKVKGNQVA---------------------------------------------------------PYKKLAGGVKFLE  310 (334)
Q Consensus       288 ~i~~~G~~i~---------------------------------------------------------~~~~~~~~i~~v~  310 (334)
                      +||.+|++|+                                                         +++.|.. +++++
T Consensus       419 ~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~P~~-~~~~~  497 (528)
T PRK07470        419 MYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLAWLDGKVARYKLPKR-FFFWD  497 (528)
T ss_pred             eEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCCHHHHHHHHHHhhhcCCCCcE-EEEec
Confidence            9999999998                                                         4455555 89999


Q ss_pred             cCCCCCCchhhHHHHhhhhcC
Q psy12107        311 TIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       311 ~lP~t~~GKi~r~~l~~~~~~  331 (334)
                      +||+|++||++|+.|++++.+
T Consensus       498 ~iP~t~~GKi~r~~l~~~~~~  518 (528)
T PRK07470        498 ALPKSGYGKITKKMVREELEE  518 (528)
T ss_pred             cCCCCCcccccHHHHHHHHHh
Confidence            999999999999999988654

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=1.1e-42  Score=328.35  Aligned_cols=271  Identities=37%  Similarity=0.625  Sum_probs=221.4

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++++|||||||.||+|+++|+++..+........  .   ......++.+..+|++|.+++...++.++..|+
T Consensus       180 ~~~~~~~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~--~---~~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~g~  254 (546)
T PLN02330        180 EILQTDLCALPFSSGTTGISKGVMLTHRNLVANLCSSLFSV--G---PEMIGQVVTLGLIPFFHIYGITGICCATLRNKG  254 (546)
T ss_pred             cCCcccEEEEEeCCCCcCCCcEEEEehHHHHHHHHHHhhcc--C---ccccCceEEEEecChHHHHHHHHHHHHHhhcCC
Confidence            45578999999999999999999999999887654321111  0   012245688999999999998877788899999


Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccc--cceeeeecCCCCCHHHHHHHHHHhccCCCce
Q psy12107        135 HMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLA--SIREVTCGAAPATKSLIDKFKQKVQREDITI  212 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~--~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i  212 (334)
                      ++++.+.+++..+++.++++++|.+.++|+++..|.+.......++.  ++|.+++||+++++++++++.+.|+  ++++
T Consensus       255 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~--~~~~  332 (546)
T PLN02330        255 KVVVMSRFELRTFLNALITQEVSFAPIVPPIILNLVKNPIVEEFDLSKLKLQAIMTAAAPLAPELLTAFEAKFP--GVQV  332 (546)
T ss_pred             EEEEecccCHHHHHHHHHHcCCeeeecCCHHHHHHHhCccccccccchheeeeEEEcCCcCCHHHHHHHHHHcC--CCeE
Confidence            99999999999999999999999999999999999886554444444  4789999999999999999999996  5689


Q ss_pred             eeccCCCCCCCcccccccC----------------------------CCCccccCcccc------ccccccCCccccccc
Q psy12107        213 RQGYGMTETSPCTLYTRFA----------------------------IPEAKLGSTGQL------VMLGYLKNEEATKET  258 (334)
Q Consensus       213 ~~~YG~tE~g~~~~~~~~~----------------------------~~~~~~~~~G~~------~~~gy~~~~~~~~~~  258 (334)
                      ++.||+||++.+...+...                            ......+..|++      ++.||+++++.+...
T Consensus       333 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~  412 (546)
T PLN02330        333 QEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRT  412 (546)
T ss_pred             EecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccCccchhhh
Confidence            9999999987543321100                            001122344554      788999999999988


Q ss_pred             cCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee-----------------------------------------
Q psy12107        259 VDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-----------------------------------------  297 (334)
Q Consensus       259 ~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-----------------------------------------  297 (334)
                      ++.++||+|||++++++||.++++||.+|+|+++|++|+                                         
T Consensus       413 ~~~~g~~~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~  492 (546)
T PLN02330        413 IDEDGWLHTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKA  492 (546)
T ss_pred             ccCCCceecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCC
Confidence            888999999999999999999999999999999999998                                         


Q ss_pred             ----------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCCC
Q psy12107        298 ----------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPK  333 (334)
Q Consensus       298 ----------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~  333 (334)
                                      +++.|.. ++++++||+|++||++|++|++++....
T Consensus       493 ~~~~~~l~~~~~~~l~~~~~p~~-~~~v~~iP~t~~GK~~r~~L~~~~~~~~  543 (546)
T PLN02330        493 KESEEDILNFVAANVAHYKKVRV-VQFVDSIPKSLSGKIMRRLLKEKMLSIN  543 (546)
T ss_pred             CCCHHHHHHHHHHhcccccCceE-EEEeccCCCCCCcceeHHHHHHHHHhhh
Confidence                            4455666 9999999999999999999999986544

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=5.7e-43  Score=326.61  Aligned_cols=265  Identities=17%  Similarity=0.143  Sum_probs=202.6

Q ss_pred             CCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcE
Q psy12107         56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMH  135 (334)
Q Consensus        56 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~  135 (334)
                      .+++|+++|+|||||||.||||+++|+++..+.......+       ....+|++++.+|++|..++.. ++.++..|++
T Consensus       116 ~~~~d~a~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-------~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G~t  187 (499)
T PLN03051        116 APVESVTNILFSSGTTGEPKAIPWTHLSPLRCASDGWAHM-------DIQPGDVVCWPTNLGWMMGPWL-LYSAFLNGAT  187 (499)
T ss_pred             CCccceEEEEeCCCCCCCCceEEEccchHHHHHHHHHHhc-------CCCCCCEEEEccCcceeeehHH-HHHHHHcCCE
Confidence            3568999999999999999999999999876544332222       2567899999999999998764 7888999999


Q ss_pred             EEEcCC-CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCC--CCccccccceeeeecCCCCCHHHHHHHHHHhccCCCce
Q psy12107        136 MITIPK-FTPETYIECVVKYKPTILFVVPSLLLFLASHPA--VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITI  212 (334)
Q Consensus       136 ~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i  212 (334)
                      +++.+. +++..+++.|+++++|++.++|+++..|++...  ....++++||.+++||+++++++.+++++.++. ++.+
T Consensus       188 ~v~~~~~~~~~~~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~-~~~~  266 (499)
T PLN03051        188 LALYGGAPLGRGFGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEGLDWSKLRVFASTGEASAVDDVLWLSSVRGY-YKPV  266 (499)
T ss_pred             EEecCCCCCcHHHHHHHHHhCCcEEEeCHHHHHHHHhcCccccccCCchhheEEEecCCCCCHHHHHHHHHhccc-ccee
Confidence            998874 788999999999999999999999999987543  334578899999999999999999887774431 2479


Q ss_pred             eeccCCCCCCCccccc-cc--------CC--------------CCcccc--Cccccc--------cccccCCcccccccc
Q psy12107        213 RQGYGMTETSPCTLYT-RF--------AI--------------PEAKLG--STGQLV--------MLGYLKNEEATKETV  259 (334)
Q Consensus       213 ~~~YG~tE~g~~~~~~-~~--------~~--------------~~~~~~--~~G~~~--------~~gy~~~~~~~~~~~  259 (334)
                      ++.||+||++...... ..        +.              .+...+  ..|++.        +.||++++. +...+
T Consensus       267 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~-~~~~~  345 (499)
T PLN03051        267 IEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADH-DKVYY  345 (499)
T ss_pred             EeeeccccccceeecccccCCCCCccccCCCCCceEEEECCCCCCCCCCCCcceEEEEecCcCCCCccccCCcc-cceee
Confidence            9999999986422211 00        00              011112  245542        468987653 33222


Q ss_pred             CC--------CCceecCceEEEecCCcEEEEccCCceEEEcCEEee----------------------------------
Q psy12107        260 DS--------EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA----------------------------------  297 (334)
Q Consensus       260 ~~--------~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------------------------------  297 (334)
                      +.        ..||+|||+|++|+||+++++||.||+||++|++|+                                  
T Consensus       346 ~g~~~~~~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~  425 (499)
T PLN03051        346 KGMPMYGSKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLV  425 (499)
T ss_pred             ecCCccccCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEE
Confidence            11        127999999999999999999999999999999999                                  


Q ss_pred             ee---------------------------------eeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 PY---------------------------------KKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 ~~---------------------------------~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                      .+                                 ++|+. |+++++||+|++|||+|++||+.+.+
T Consensus       426 a~v~~~v~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~~-i~~v~~lP~t~~GKi~r~~L~~~~~~  491 (499)
T PLN03051        426 IFLVLGEEKKGFDQARPEALQKKFQEAIQTNLNPLFKVSR-VKIVPELPRNASNKLLRRVLRDQLKK  491 (499)
T ss_pred             EEEEcceecccccccchHHHHHHHHHHHHhhcCCccCCce-EEEcCCCCCCCCccHHHHHHHHHHHH
Confidence            00                                 11223 88899999999999999999987644

>PLN02614 long-chain acyl-CoA synthetase

Probab=100.00  E-value=5e-43  Score=336.27  Aligned_cols=270  Identities=28%  Similarity=0.441  Sum_probs=196.9

Q ss_pred             CCceEEEEcCCCCC--------CCCccchhhhhcC-CCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhh
Q psy12107         20 NFRGTIVVGGEHDK--------SKNIFGFKQLVTS-QPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQ   90 (334)
Q Consensus        20 ~~~~ii~~~~~~~~--------~~~~~~~~~ll~~-~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~   90 (334)
                      .++.++++++....        .....+|++++.. .....+.....++|+++|+|||||||.||||++||+++..+...
T Consensus       175 ~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~I~yTSGTTG~PKGV~lth~nl~~~~~~  254 (666)
T PLN02614        175 YMKTVVSFGGVSREQKEEAETFGLVIYAWDEFLKLGEGKQYDLPIKKKSDICTIMYTSGTTGDPKGVMISNESIVTLIAG  254 (666)
T ss_pred             cceEEEEeCCCChHHhhhhhhcCcEEEEHHHHHhhcccCCCCCCCCCCCceEEEEEcCCCCCCCcEEEEecHHHHHHHHH
Confidence            36778877642100        0113578887632 11111123456899999999999999999999999999877654


Q ss_pred             hccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHh
Q psy12107         91 CVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLA  170 (334)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~  170 (334)
                      ....+...  ......+|++++.+|++|+++... ....+..|+++++.+ +++..+++.|++++||+++++|+++..|.
T Consensus       255 ~~~~~~~~--~~~~~~~d~~l~~lPl~H~~~~~~-~~~~l~~G~~v~~~~-~~~~~~~~~i~~~~~T~~~~vP~~~~~l~  330 (666)
T PLN02614        255 VIRLLKSA--NAALTVKDVYLSYLPLAHIFDRVI-EECFIQHGAAIGFWR-GDVKLLIEDLGELKPTIFCAVPRVLDRVY  330 (666)
T ss_pred             HHhhcccc--ccCCCCCcEEEEeccHHHHHHHHH-HHHHHHhCCEEEEeC-CCHHHHHHHHHHhCCeEEEecHHHHHHHH
Confidence            43221000  002567899999999999998865 556678899988865 58999999999999999999999998876


Q ss_pred             cCCCC---------------------------------Cc-----------ccc-ccceeeeecCCCCCHHHHHHHHHHh
Q psy12107        171 SHPAV---------------------------------TP-----------EHL-ASIREVTCGAAPATKSLIDKFKQKV  205 (334)
Q Consensus       171 ~~~~~---------------------------------~~-----------~~~-~~lr~v~~~G~~l~~~~~~~~~~~~  205 (334)
                      +....                                 ..           ..+ ++||.+++||+++++++ +++.+.+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr~~~~Gga~l~~~~-~~~~~~~  409 (666)
T PLN02614        331 SGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGGNVRIILSGAAPLASHV-ESFLRVV  409 (666)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCCcEEEEEEcCCCCCHHH-HHHHHHh
Confidence            32100                                 00           011 58999999999999876 5666677


Q ss_pred             ccCCCceeeccCCCCCCCcccccccCC-----C---------------------CccccCcccc------ccccccCCcc
Q psy12107        206 QREDITIRQGYGMTETSPCTLYTRFAI-----P---------------------EAKLGSTGQL------VMLGYLKNEE  253 (334)
Q Consensus       206 ~~~~~~i~~~YG~tE~g~~~~~~~~~~-----~---------------------~~~~~~~G~~------~~~gy~~~~~  253 (334)
                      +  ++.+++.||+||++...+......     .                     +...+..|++      ++.|||++|+
T Consensus       410 ~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~g~~GEl~vrGp~v~~GY~~~pe  487 (666)
T PLN02614        410 A--CCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALASTPRGEICIRGKTLFSGYYKRED  487 (666)
T ss_pred             c--CCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCCCCCceEEEcCCcccccccCCHH
Confidence            5  458999999999875443221100     0                     0111234444      7899999999


Q ss_pred             ccccccCCCCceecCceEEEecCCcEEEEccCCceEEE-cCEEee
Q psy12107        254 ATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKV-KGNQVA  297 (334)
Q Consensus       254 ~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~i~  297 (334)
                      .|++.| .+|||+|||+|++|+||+++++||.||+||+ +|++|+
T Consensus       488 ~T~~~f-~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~  531 (666)
T PLN02614        488 LTKEVL-IDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVA  531 (666)
T ss_pred             Hhhhhh-ccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeec
Confidence            999999 5899999999999999999999999999997 699999

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.3e-42  Score=323.83  Aligned_cols=314  Identities=25%  Similarity=0.422  Sum_probs=237.2

Q ss_pred             cchhhHHHHHHhhhCCCCceEEEEcCCCCC---CCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhc
Q psy12107          4 IPQLLEVGTKIGATLPNFRGTIVVGGEHDK---SKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLS   80 (334)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t   80 (334)
                      +.++.+.+.++...++.++.++.+.+....   .....+|++++............+++++++++|||||||.||+|+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s  197 (539)
T PRK07008        118 DLTFLPLVDALAPQCPNVKGWVAMTDAAHLPAGSTPLLCYETLVGAQDGDYDWPRFDENQASSLCYTSGTTGNPKGALYS  197 (539)
T ss_pred             cchhHHHHHHHHhhCCCceEEEEEccCCccccCCcccccHHHHhcccCCCcCcccCCcccceEEEECCCCCCCCcEEEEe
Confidence            345556666666667777777766543211   12356777776322222222345678999999999999999999999


Q ss_pred             chHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcC-CCCHHHHHHHHHHcCCeEE
Q psy12107         81 HNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKPTIL  159 (334)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l  159 (334)
                      |+++..+.........     .....+|++++..|++|.+++.. .+.++..|+++++.+ .++++.+++.++++++|++
T Consensus       198 ~~~~~~~~~~~~~~~~-----~~~~~~d~~l~~~p~~h~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~l~~~~vt~~  271 (539)
T PRK07008        198 HRSTVLHAYGAALPDA-----MGLSARDAVLPVVPMFHVNAWGL-PYSAPLTGAKLVLPGPDLDGKSLYELIEAERVTFS  271 (539)
T ss_pred             cHHHHHHHHHhhcccc-----cCCCCCceEEecCchHHhhhHHH-HHHHHhcCceEEEecCCcCHHHHHHHHHHcCCEEE
Confidence            9998654322111100     12567899999999999887765 567788999988864 5799999999999999999


Q ss_pred             eechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccC--------
Q psy12107        160 FVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA--------  231 (334)
Q Consensus       160 ~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~--------  231 (334)
                      .++|+++..|.+.......+++++|.++++|+++++++.+++.+.++.   ++++.||+||++...+.....        
T Consensus       272 ~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~---~l~~~YG~tE~~~~~~~~~~~~~~~~~~~  348 (539)
T PRK07008        272 AGVPTVWLGLLNHMREAGLRFSTLRRTVIGGSACPPAMIRTFEDEYGV---EVIHAWGMTEMSPLGTLCKLKWKHSQLPL  348 (539)
T ss_pred             EechHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHHHhCC---ceecccccccccccceecccccccccCCc
Confidence            999999999988766566778899999999999999999999999864   799999999998543321100        


Q ss_pred             ----------------------CCC---ccc--cCcccc------ccccccCCccccccccCCCCceecCceEEEecCCc
Q psy12107        232 ----------------------IPE---AKL--GSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGY  278 (334)
Q Consensus       232 ----------------------~~~---~~~--~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~  278 (334)
                                            ++.   ...  +..|++      ++.||+++++   ..+ .+|||+|||++++++||+
T Consensus       349 ~~~~~~~~~~G~p~pg~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~---~~~-~~g~~~TGD~~~~~~dg~  424 (539)
T PRK07008        349 DEQRKLLEKQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDA---SPL-VDGWFPTGDVATIDADGF  424 (539)
T ss_pred             hhhhhhcccCCccccceEEEEECCCCCccCCCCCcceEEEEeCCccchhhcCChh---hhh-cCCCcccCceEEEcCCCc
Confidence                                  000   000  123444      5678998873   334 378999999999999999


Q ss_pred             EEEEccCCceEEEcCEEee---------------------------------------------------------eeee
Q psy12107        279 FYIVDRTKELIKVKGNQVA---------------------------------------------------------PYKK  301 (334)
Q Consensus       279 ~~~~GR~~d~i~~~G~~i~---------------------------------------------------------~~~~  301 (334)
                      +++.||.+|+||.+|++|+                                                         +++.
T Consensus       425 l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~  504 (539)
T PRK07008        425 MQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTREELLAFYEGKVAKWWI  504 (539)
T ss_pred             EEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCccCHHHHHHHHHhhcccccC
Confidence            9999999999999999998                                                         4456


Q ss_pred             ccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        302 LAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       302 ~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                      |.. |+++++||+|++||++|++|++.+.+
T Consensus       505 P~~-i~~v~~lP~t~sgKi~r~~l~~~~~~  533 (539)
T PRK07008        505 PDD-VVFVDAIPHTATGKLQKLKLREQFRD  533 (539)
T ss_pred             CeE-EEEecCCCCCCccceeHHHHHHHHHh
Confidence            666 99999999999999999999988754

>PRK09088 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.7e-42  Score=319.48  Aligned_cols=267  Identities=26%  Similarity=0.466  Sum_probs=220.1

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++++|||||||.||+|.++|+++...........       .....+++++.+|++|.+++...+..++..|+
T Consensus       131 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~-------~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~g~  203 (488)
T PRK09088        131 SIPPERVSLILFTSGTSGQPKGVMLSERNLQQTAHNFGVLG-------RVDAHSSFLCDAPMFHIIGLITSVRPVLAVGG  203 (488)
T ss_pred             CCCCCCceEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-------CCCCCcEEEEecchHHHHHHHHHHHHHHhcCC
Confidence            45678999999999999999999999999877655443322       25678899999999999999887888899999


Q ss_pred             EEEEcCCCCHHHHHHHHH--HcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCce
Q psy12107        135 HMITIPKFTPETYIECVV--KYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITI  212 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~--~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i  212 (334)
                      ++++.+.+++...+..+.  ++++|+++++|+++..+.+........+++||.+++||++++++..+.+.+.    ++++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~gG~~~~~~~~~~~~~~----g~~v  279 (488)
T PRK09088        204 SILVSNGFEPKRTLGRLGDPALGITHYFCVPQMAQAFRAQPGFDAAALRHLTALFTGGAPHAAEDILGWLDD----GIPM  279 (488)
T ss_pred             EEEEcCCCCHHHHHHHHHhhccCCcEEeeHHHHHHHHHhCcCcCccccccceEEEecCCCCCHHHHHHHHHh----CCce
Confidence            999988889999998886  4899999999999999987765555667899999999999999888877754    3489


Q ss_pred             eeccCCCCCCCcccccccC-----------C--------------CCccccCcccc------ccccccCCccccccccCC
Q psy12107        213 RQGYGMTETSPCTLYTRFA-----------I--------------PEAKLGSTGQL------VMLGYLKNEEATKETVDS  261 (334)
Q Consensus       213 ~~~YG~tE~g~~~~~~~~~-----------~--------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~  261 (334)
                      ++.||+||++.+.......           .              .....+..|++      ++.||+++++.+...+..
T Consensus       280 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~  359 (488)
T PRK09088        280 VDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTG  359 (488)
T ss_pred             eeeecccccccccccCCCcccccccCCccccCCCCcEEEEECCCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcC
Confidence            9999999998643221100           0              00112233444      677899999999988888


Q ss_pred             CCceecCceEEEecCCcEEEEccCCceEEEcCEEee--------------------------------------------
Q psy12107        262 EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA--------------------------------------------  297 (334)
Q Consensus       262 ~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~--------------------------------------------  297 (334)
                      +|||+|||+|+++++|.+++.||.+|+|+.+|++|+                                            
T Consensus       360 ~g~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~  439 (488)
T PRK09088        360 DGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLD  439 (488)
T ss_pred             CCCeeecceEEEcCCCcEEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCC
Confidence            999999999999999999999999999999999998                                            


Q ss_pred             -------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCCC
Q psy12107        298 -------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPK  333 (334)
Q Consensus       298 -------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~  333 (334)
                                   +++.|.. |+++++||+|++||++|++|++++.+..
T Consensus       440 ~~~l~~~~~~~l~~~~~p~~-i~~~~~iP~t~~gKi~r~~l~~~~~~~~  487 (488)
T PRK09088        440 LERIRSHLSTRLAKYKVPKH-LRLVDALPRTASGKLQKARLRDALAAGR  487 (488)
T ss_pred             HHHHHHHHHhhCcCCCCCCE-EEEcccCCCCCCCceeHHHHHHHHHhcC
Confidence                         4445665 9999999999999999999999987654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=100.00  E-value=8.2e-43  Score=355.57  Aligned_cols=266  Identities=33%  Similarity=0.488  Sum_probs=224.2

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ..+++|+++++|||||||.||+|.++|+++..+.......+       ...++|++++.+|++|.+++...++.++..|+
T Consensus       778 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-------~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~  850 (1146)
T PRK08633        778 TFKPDDTATIIFSSGSEGEPKGVMLSHHNILSNIEQISDVF-------NLRNDDVILSSLPFFHSFGLTVTLWLPLLEGI  850 (1146)
T ss_pred             CCCCCCEEEEEECCCCCCCCceEEechHHHHHHHHHHHHhc-------CCCCCCEEEEcCcHHHHHhHHHHHHHHHHCCC
Confidence            45679999999999999999999999999988776654433       25678999999999999999877788899999


Q ss_pred             EEEEcC-CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCcee
Q psy12107        135 HMITIP-KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR  213 (334)
Q Consensus       135 ~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~  213 (334)
                      ++++.+ .++++.+++.++++++|++.++|++++.+.+.....+.+++++|.+++||+++++++.+.+++.++.   +++
T Consensus       851 ~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~---~~~  927 (1146)
T PRK08633        851 KVVYHPDPTDALGIAKLVAKHRATILLGTPTFLRLYLRNKKLHPLMFASLRLVVAGAEKLKPEVADAFEEKFGI---RIL  927 (1146)
T ss_pred             EEEEeCCCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhccccCcccCCCeeeEEEcCCcCCHHHHHHHHHHhCC---Cee
Confidence            988876 4789999999999999999999999999988766666788999999999999999999999999864   799


Q ss_pred             eccCCCCCCCcccccccC---------------------------------CCCccccCcccc------ccccccCCccc
Q psy12107        214 QGYGMTETSPCTLYTRFA---------------------------------IPEAKLGSTGQL------VMLGYLKNEEA  254 (334)
Q Consensus       214 ~~YG~tE~g~~~~~~~~~---------------------------------~~~~~~~~~G~~------~~~gy~~~~~~  254 (334)
                      +.||+||++.+++.....                                 ..+...+..|++      ++.||+++++.
T Consensus       928 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~ 1007 (1146)
T PRK08633        928 EGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEK 1007 (1146)
T ss_pred             cccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccccCCccc
Confidence            999999998655432110                                 001122344544      67899999999


Q ss_pred             cccccCC---CCceecCceEEEecCCcEEEEccCCceEEEcCEEee----------------------------------
Q psy12107        255 TKETVDS---EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA----------------------------------  297 (334)
Q Consensus       255 ~~~~~~~---~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------------------------------  297 (334)
                      +.+.+..   ++||+|||++++|+||++++.||.||+||++|++|+                                  
T Consensus      1008 t~~~~~~~~~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~ 1087 (1146)
T PRK08633       1008 TAEVIKDIDGIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLV 1087 (1146)
T ss_pred             hHHHhhcCCCCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEE
Confidence            9887742   389999999999999999999999999999999998                                  


Q ss_pred             -----------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 -----------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 -----------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                             +++.|.. ++++++||+|++||++|++||+...+
T Consensus      1088 ~~v~~~~~~~~~l~~~~~~~~l~~~~~P~~-i~~~~~iP~t~~GKi~r~~L~~~~~~ 1143 (1146)
T PRK08633       1088 VLHTCGAEDVEELKRAIKESGLPNLWKPSR-YFKVEALPLLGSGKLDLKGLKELALA 1143 (1146)
T ss_pred             EEEecCccCHHHHHHHHHhcCCCcccCCcE-EEEecCcCCCCCCCCcHHHHHHHHHH
Confidence                                   3445555 99999999999999999999987654

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=100.00  E-value=4e-42  Score=322.04  Aligned_cols=310  Identities=25%  Similarity=0.403  Sum_probs=240.2

Q ss_pred             chhhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHH
Q psy12107          5 PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNC   84 (334)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~   84 (334)
                      .+..+.+.++...+|.++.++.++...   .....+.+++....+........++++++++|||||||.||+|+++|+++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~s~~~~  186 (508)
T TIGR02262       110 GELLPVIKAALGKSPHLEHRVVVGRPE---AGEVQLAELLATESEQFKPAATQADDPAFWLYSSGSTGMPKGVVHTHSNP  186 (508)
T ss_pred             hhhHHHHHHHHhcCCCccEEEEeCCCC---cccccHHHHhhcCCCccCCCCCCCCCcEEEEeCCCCCCCCcEEEEechhH
Confidence            445566666666778888888776432   13456666664322222223456789999999999999999999999999


Q ss_pred             HHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC-CCHHHHHHHHHHcCCeEEeech
Q psy12107         85 AVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK-FTPETYIECVVKYKPTILFVVP  163 (334)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p  163 (334)
                      ............      ...+++++++.+|++|.+++...++.++..|+++++.+. +++..+++.|+++++|+++++|
T Consensus       187 ~~~~~~~~~~~~------~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P  260 (508)
T TIGR02262       187 YWTAELYARNTL------GIREDDVVFSAAKLFFAYGLGNALTFPMSVGATTVLMGERPTPDAVFDRLRRHQPTIFYGVP  260 (508)
T ss_pred             HHHHHHHhHHhc------CCCCCCEEEEcCchHHHHHHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHCCcEEecch
Confidence            876654222111      256789999999999999987777788889998888664 6899999999999999999999


Q ss_pred             HHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC-----------
Q psy12107        164 SLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI-----------  232 (334)
Q Consensus       164 ~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-----------  232 (334)
                      +++..+............++|.++++|+++++++.+.|.+.|+.   ++++.||+||++.+...+....           
T Consensus       261 ~~~~~~~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~---~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~  337 (508)
T TIGR02262       261 TLYAAMLADPNLPAEDQVRLRLCTSAGEALPAEVGQRWQARFGV---DIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVP  337 (508)
T ss_pred             HHHHHHhcCccccccccccceeEEEcCCCCCHHHHHHHHHHhCC---chhhCccccccCceeecCCccCCCCCCcCCCCC
Confidence            99988876654334456789999999999999999999999964   7999999999986543221110           


Q ss_pred             -----------CCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEE
Q psy12107        233 -----------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQ  295 (334)
Q Consensus       233 -----------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~  295 (334)
                                 .....+..|++      ++.||+++++.+...+ .++||+|||+++++++|.+++.||.+|+|+.+|.+
T Consensus       338 g~~v~i~d~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~gR~~d~i~~~G~~  416 (508)
T TIGR02262       338 GYRLRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTF-QGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIY  416 (508)
T ss_pred             CcEEEEECCCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhh-hcCceeccceEEEcCCccEEEeccccceeeeCCEE
Confidence                       00112334544      5688999999888887 58999999999999999999999999999999999


Q ss_pred             ee------------------------------------------------------------eeeeccCcEEEeecCCCC
Q psy12107        296 VA------------------------------------------------------------PYKKLAGGVKFLETIPRN  315 (334)
Q Consensus       296 i~------------------------------------------------------------~~~~~~~~i~~v~~lP~t  315 (334)
                      |+                                                            +++.|.. ++++++||+|
T Consensus       417 v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~-i~~~~~iP~t  495 (508)
T TIGR02262       417 VSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDRLAPYKYPRW-IVFVDDLPKT  495 (508)
T ss_pred             ECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccccHHHHHHHHHHhcccCCCCce-EEEecCCCCC
Confidence            98                                                            2223444 8889999999


Q ss_pred             CCchhhHHHHhhh
Q psy12107        316 PAGKVLRNELKVF  328 (334)
Q Consensus       316 ~~GKi~r~~l~~~  328 (334)
                      ++||++|++|+++
T Consensus       496 ~~gKi~r~~l~~~  508 (508)
T TIGR02262       496 ATGKIQRFKLREG  508 (508)
T ss_pred             CCCcEehhhccCC
Confidence            9999999999864

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PLN03102 acyl-activating enzyme; Provisional

Probab=100.00  E-value=2.9e-42  Score=327.27  Aligned_cols=262  Identities=26%  Similarity=0.414  Sum_probs=209.0

Q ss_pred             CCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcE
Q psy12107         56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMH  135 (334)
Q Consensus        56 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~  135 (334)
                      ..++|+++|+|||||||.||+|+++|+++...........       .....+++++.+|++|..++.. .+.++..|++
T Consensus       183 ~~~~d~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-------~~~~~~~~l~~~pl~h~~g~~~-~~~~~~~g~~  254 (579)
T PLN03102        183 QDEHDPISLNYTSGTTADPKGVVISHRGAYLSTLSAIIGW-------EMGTCPVYLWTLPMFHCNGWTF-TWGTAARGGT  254 (579)
T ss_pred             CCCCCcEEEEeCCcCCCCCCEEEEecHHHHHHHHHHHhhc-------CCCCCCeEEecCChhhhcchhH-HHHHHHhcCc
Confidence            4578999999999999999999999999754433222111       1445678899999999998876 5667788888


Q ss_pred             EEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeec
Q psy12107        136 MITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQG  215 (334)
Q Consensus       136 ~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~  215 (334)
                      +++.+.+++..+++.|+++++|+++++|+++..|.+.........++++.+++||+++++.+.+++++ ++   +++++.
T Consensus       255 ~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~-~g---~~i~~~  330 (579)
T PLN03102        255 SVCMRHVTAPEIYKNIEMHNVTHMCCVPTVFNILLKGNSLDLSPRSGPVHVLTGGSPPPAALVKKVQR-LG---FQVMHA  330 (579)
T ss_pred             EEeeccCChHHHHHHHHHcCCeEEEeChHHHHHHHhCcccccCCcccceEEEECCCCCCHHHHHHHHH-cC---CeEEee
Confidence            88888889999999999999999999999999998865444445567888999999999999999875 55   479999


Q ss_pred             cCCCCCCCccccccc-------------------C----------------CCCccc--cCcccc------ccccccCCc
Q psy12107        216 YGMTETSPCTLYTRF-------------------A----------------IPEAKL--GSTGQL------VMLGYLKNE  252 (334)
Q Consensus       216 YG~tE~g~~~~~~~~-------------------~----------------~~~~~~--~~~G~~------~~~gy~~~~  252 (334)
                      ||+||++..++....                   +                ..+...  +..|++      ++.||++++
T Consensus       331 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~  410 (579)
T PLN03102        331 YGLTEATGPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNP  410 (579)
T ss_pred             cCccccCccccccccccccccCCcccccccccCCCcccccccceEEeccccccccCCCCCCceEEEEECcchhhhhcCCh
Confidence            999998753321100                   0                000000  123444      788999999


Q ss_pred             cccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee-----------------------------------
Q psy12107        253 EATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-----------------------------------  297 (334)
Q Consensus       253 ~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-----------------------------------  297 (334)
                      +.+...| .+|||+|||+|++|+||++++.||.+|+|+++|++|+                                   
T Consensus       411 ~~t~~~f-~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v  489 (579)
T PLN03102        411 KATSEAF-KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFV  489 (579)
T ss_pred             hhhHhhh-ccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEE
Confidence            9999988 5899999999999999999999999999999999998                                   


Q ss_pred             --------------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 --------------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 --------------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                                      +++.|.. ++++++||+|++||++|++|++...+
T Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~-i~~~~~~P~t~~gKi~r~~L~~~~~~  554 (579)
T PLN03102        490 VLEKGETTKEDRVDKLVTRERDLIEYCRENLPHFMCPRK-VVFLQELPKNGNGKILKPKLRDIAKG  554 (579)
T ss_pred             EecCcccccccccccccccHHHHHHHHHhhcccccCCeE-EEEcccCCCCCcccccHHHHHHHHHH
Confidence                                            2334444 88999999999999999999998654

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=100.00  E-value=2.5e-42  Score=351.32  Aligned_cols=264  Identities=28%  Similarity=0.455  Sum_probs=216.5

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ..+++|+++++|||||||.||+|+++|+++..+........       ...++|++++.+|++|.+++...++.++..|+
T Consensus       789 ~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-------~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~  861 (1140)
T PRK06814        789 NRDPDDPAVILFTSGSEGTPKGVVLSHRNLLANRAQVAARI-------DFSPEDKVFNALPVFHSFGLTGGLVLPLLSGV  861 (1140)
T ss_pred             CCCCCCcEEEEECCCccCCCcEEEecHHHHHHHHHHHHHhh-------CCCCcCEEEEecchHHHHHHHHHHHHHHHcCC
Confidence            35689999999999999999999999999987776555443       25678999999999999998777888999999


Q ss_pred             EEEEcCC-CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCcee
Q psy12107        135 HMITIPK-FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR  213 (334)
Q Consensus       135 ~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~  213 (334)
                      ++++.+. .+.+.+.+.++++++|++.++|+++..+.+..  ...+++++|.+++||+++++++.+.+.+.++.   +++
T Consensus       862 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~--~~~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~---~~~  936 (1140)
T PRK06814        862 KVFLYPSPLHYRIIPELIYDTNATILFGTDTFLNGYARYA--HPYDFRSLRYVFAGAEKVKEETRQTWMEKFGI---RIL  936 (1140)
T ss_pred             EEEEecCcccHHHHHHHHHhcCCEEEEecHHHHHHHHhhc--ccccccceeEEEEcCCcCCHHHHHHHHHHhCC---cEE
Confidence            9988764 56778899999999999999999999987653  34567899999999999999999999999864   799


Q ss_pred             eccCCCCCCCcccccccCCC-C-----------------ccccCcccc------ccccccCCccccccccCCCCceecCc
Q psy12107        214 QGYGMTETSPCTLYTRFAIP-E-----------------AKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGD  269 (334)
Q Consensus       214 ~~YG~tE~g~~~~~~~~~~~-~-----------------~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD  269 (334)
                      +.||+||++..+........ .                 ...+..|++      ++.||++++.........+|||+|||
T Consensus       937 ~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~g~~~~~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGD 1016 (1140)
T PRK06814        937 EGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVPGIDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGD 1016 (1140)
T ss_pred             eccccccccceEEecCCCCCCCCcCCccCCCCeEEEeecCCCCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCC
Confidence            99999999875543321110 0                 001223333      78899987654322223589999999


Q ss_pred             eEEEecCCcEEEEccCCceEEEcCEEee----------------------------------------------------
Q psy12107        270 VAYYDEDGYFYIVDRTKELIKVKGNQVA----------------------------------------------------  297 (334)
Q Consensus       270 ~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------------------------------------------------  297 (334)
                      ++++|+||+++++||.||+||++|++|+                                                    
T Consensus      1017 l~~~d~dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~ 1096 (1140)
T PRK06814       1017 IVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTTASDATRAAFLAHAKAA 1096 (1140)
T ss_pred             EEEECCCCeEEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEcCCCcCHHHHHHHHHHc
Confidence            9999999999999999999999999999                                                    


Q ss_pred             ---eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 ---PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 ---~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                         +++.|.. +++++++|+|++||++|++|++...+
T Consensus      1097 ~l~~~~~P~~-i~~v~~lP~t~~GKi~r~~L~~~~~~ 1132 (1140)
T PRK06814       1097 GASELMVPAE-IITIDEIPLLGTGKIDYVAVTKLAEE 1132 (1140)
T ss_pred             CCCcccCCcE-EEEecCcCCCCCCCCcHHHHHHHHHH
Confidence               4555666 99999999999999999999998754

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.3e-42  Score=328.17  Aligned_cols=269  Identities=32%  Similarity=0.479  Sum_probs=222.6

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++++|||||||.||+|.++|+++..+..........     ....++++++..|++|.+++...+..++..|+
T Consensus       215 ~~~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~g~  289 (573)
T PRK05605        215 RPTPDDVALILYTSGTTGKPKGAQLTHRNLFANAAQGKAWVPG-----LGDGPERVLAALPMFHAYGLTLCLTLAVSIGG  289 (573)
T ss_pred             CCCCCCEEEEEcCCCCCCCCcEEEEecHHHHHHHHHHHhhccc-----cCCCCcEEEEecChHHHHHHHHHHHHHHHcCC
Confidence            4567899999999999999999999999998776543322110     02347899999999999998777777889999


Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceee
Q psy12107        135 HMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ  214 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~  214 (334)
                      ++++.+.++++.+++.|+++++|++.++|++++.|.+.......++++||.+++||+++++++.+++.+.++.   .+++
T Consensus       290 ~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~---~i~~  366 (573)
T PRK05605        290 ELVLLPAPDIDLILDAMKKHPPTWLPGVPPLYEKIAEAAEERGVDLSGVRNAFSGAMALPVSTVELWEKLTGG---LLVE  366 (573)
T ss_pred             EEEEeCCCCHHHHHHHHHHhCCEEEEchHHHHHHHHhCccccCCCchhccEEEECCCcCCHHHHHHHHHHhCC---Ceec
Confidence            9999888899999999999999999999999999998776666778899999999999999999999998864   7999


Q ss_pred             ccCCCCCCCcccccccCC-------------------------CCccccCcccc------ccccccCCccccccccCCCC
Q psy12107        215 GYGMTETSPCTLYTRFAI-------------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEG  263 (334)
Q Consensus       215 ~YG~tE~g~~~~~~~~~~-------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~  263 (334)
                      .||+||++.++.......                         .....+..|++      ++.||+++++.+...| .+|
T Consensus       367 ~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~g  445 (573)
T PRK05605        367 GYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSF-LDG  445 (573)
T ss_pred             ccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcc-cCC
Confidence            999999986554322110                         00112333444      6789999999998888 467


Q ss_pred             ceecCceEEEecCCcEEEEccCCceEEEcCEEee----------------------------------------------
Q psy12107        264 WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA----------------------------------------------  297 (334)
Q Consensus       264 ~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------------------------------------------  297 (334)
                      ||+|||+++++++|++++.||.+|+++.+|++|+                                              
T Consensus       446 ~~~TGD~~~~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~  525 (573)
T PRK05605        446 WFRTGDVVVMEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPE  525 (573)
T ss_pred             CcccCCEEEEcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCCHH
Confidence            9999999999999999999999999999999998                                              


Q ss_pred             -----------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCCC
Q psy12107        298 -----------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPK  333 (334)
Q Consensus       298 -----------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~  333 (334)
                                 +++.|.. |+++++||+|++||++|++|++++.+..
T Consensus       526 ~l~~~~~~~l~~~~~p~~-i~~~~~iP~t~~GKi~r~~L~~~~~~~~  571 (573)
T PRK05605        526 GLRAYCREHLTRYKVPRR-FYHVDELPRDQLGKVRRREVREELLEKL  571 (573)
T ss_pred             HHHHHHHHhCccccCCcE-EEEeccCCCCCcccccHHHHHHHHHHHh
Confidence                       3445555 8899999999999999999999886543

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=100.00  E-value=5.8e-42  Score=321.54  Aligned_cols=310  Identities=26%  Similarity=0.390  Sum_probs=237.9

Q ss_pred             chhhHHHHHHhhhCCCCceEEEEcCCCCC---CCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcc
Q psy12107          5 PQLLEVGTKIGATLPNFRGTIVVGGEHDK---SKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSH   81 (334)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~   81 (334)
                      .+..+.+......++.+..++.+++....   ......|+++....... +......+++++++|||||||.||+|.++|
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~  183 (515)
T TIGR03098       105 SERLDLLHPALPGCHDLRTLILVGEPAHASEGGGESPSWPKLLALGDAD-PPHPVIDSDMAAILYTSGSTGRPKGVVLSH  183 (515)
T ss_pred             cchhhhhHhhhhcccccceEEEecCcccccCCccccccHHHhhcccccc-ccCCCCcCCeEEEEECCCCCCCCceEEEec
Confidence            33344444555556666677776643211   12234666665321111 122345689999999999999999999999


Q ss_pred             hHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEee
Q psy12107         82 NNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFV  161 (334)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~  161 (334)
                      +++..+.......+       ....++++++.+|++|++++.. ++.++..|+++++.+.++++.+++.++++++|++.+
T Consensus       184 ~~l~~~~~~~~~~~-------~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~  255 (515)
T TIGR03098       184 RNLVAGAQSVATYL-------ENRPDDRLLAVLPLSFDYGFNQ-LTTAFYVGATVVLHDYLLPRDVLKALEKHGITGLAA  255 (515)
T ss_pred             HHHHHHHHHHHHHh-------CCCcccEEEEECchhhHhHHHH-HHHHHHcCCEEEEcCCCCHHHHHHHHHHcCCceEec
Confidence            99987766554433       2567889999999999999876 788999999999998899999999999999999999


Q ss_pred             chHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC---------
Q psy12107        162 VPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI---------  232 (334)
Q Consensus       162 ~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~---------  232 (334)
                      +|+++..|.+... ....++++|.++++|+++++++.+.+++.++  ++.+++.||+||++.+........         
T Consensus       256 ~P~~~~~l~~~~~-~~~~~~~l~~~~~~g~~l~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~  332 (515)
T TIGR03098       256 VPPLWAQLAQLDW-PESAAPSLRYLTNSGGAMPRATLSRLRSFLP--NARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGK  332 (515)
T ss_pred             ChHHHHHHHhccc-CCCCccceEEEEecCCcCCHHHHHHHHHHCC--CCeEeeeeccccccceEecccccccCCCCCcce
Confidence            9999999986532 2346778999999999999999999999986  458999999999875443221100         


Q ss_pred             --------------CCccccCcccc------ccccccCCccccccccCC-----------CCceecCceEEEecCCcEEE
Q psy12107        233 --------------PEAKLGSTGQL------VMLGYLKNEEATKETVDS-----------EGWLHTGDVAYYDEDGYFYI  281 (334)
Q Consensus       233 --------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~-----------~~~~~TGD~~~~~~dg~~~~  281 (334)
                                    .....+..|++      ++.||+++++.+...+.+           ++||+|||++++++||++++
T Consensus       333 ~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~l~~  412 (515)
T TIGR03098       333 AIPNAEVLVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDEEGFLYF  412 (515)
T ss_pred             ecCCCEEEEECCCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcCCceEEE
Confidence                          00011223433      688999999887766532           34899999999999999999


Q ss_pred             EccCCceEEEcCEEee---------------------------------------------------------eeeeccC
Q psy12107        282 VDRTKELIKVKGNQVA---------------------------------------------------------PYKKLAG  304 (334)
Q Consensus       282 ~GR~~d~i~~~G~~i~---------------------------------------------------------~~~~~~~  304 (334)
                      .||.+|+|+.+|++|+                                                         +++.|..
T Consensus       413 ~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~  492 (515)
T TIGR03098       413 VGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELDRAALLAECRARLPNYMVPAL  492 (515)
T ss_pred             EeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCCCHHHHHHHHHhhCccccCCCE
Confidence            9999999999999999                                                         5556666


Q ss_pred             cEEEeecCCCCCCchhhHHHHhh
Q psy12107        305 GVKFLETIPRNPAGKVLRNELKV  327 (334)
Q Consensus       305 ~i~~v~~lP~t~~GKi~r~~l~~  327 (334)
                       ++++++||+|++||++|++|++
T Consensus       493 -i~~v~~iP~t~~GK~~r~~L~~  514 (515)
T TIGR03098       493 -IHVRQALPRNANGKIDRKALAA  514 (515)
T ss_pred             -EEEeccCCCCCCCCCcHHHhcc
Confidence             9999999999999999999985

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK07787 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2e-42  Score=321.02  Aligned_cols=260  Identities=31%  Similarity=0.472  Sum_probs=217.8

Q ss_pred             CCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcE
Q psy12107         56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMH  135 (334)
Q Consensus        56 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~  135 (334)
                      ..++|+++++|||||||.||+|+++|+++..+.......+       .....+++++.+|++|..++...++.++..|++
T Consensus       125 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~l~~~~~~~~~~~-------~~~~~~~~~~~~p~~~~~g~~~~~~~~l~~G~~  197 (471)
T PRK07787        125 PDPDAPALIVYTSGTTGPPKGVVLSRRAIAADLDALAEAW-------QWTADDVLVHGLPLFHVHGLVLGVLGPLRIGNR  197 (471)
T ss_pred             CCCCceEEEEECCCCCCCCCEEEEeHHHHHHHHHHHHHhc-------CCCccceeEeccCCeeechhHHHHHHHHhcCCE
Confidence            4578999999999999999999999999988776555443       256788999999999999998888999999999


Q ss_pred             EEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeec
Q psy12107        136 MITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQG  215 (334)
Q Consensus       136 ~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~  215 (334)
                      +++.+.+++..+++.|+ ++++++.++|+++..|.+... ....++++|.+++||+++++++.+++++.++.   ++++.
T Consensus       198 ~~~~~~~~~~~~~~~i~-~~~t~~~~~P~~~~~l~~~~~-~~~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~---~~~~~  272 (471)
T PRK07787        198 FVHTGRPTPEAYAQALS-EGGTLYFGVPTVWSRIAADPE-AARALRGARLLVSGSAALPVPVFDRLAALTGH---RPVER  272 (471)
T ss_pred             EEecCCCCHHHHHHHHh-hCceEEEcchHHHHHHHhCcc-ccccccceeEEEECCCCCCHHHHHHHHHHcCC---Ceecc
Confidence            99998899999999999 999999999999999987533 23467789999999999999999999998864   79999


Q ss_pred             cCCCCCCCcccccccCC-------------------CCcc----cc-Ccccc------ccccccCCccccccccCCCCce
Q psy12107        216 YGMTETSPCTLYTRFAI-------------------PEAK----LG-STGQL------VMLGYLKNEEATKETVDSEGWL  265 (334)
Q Consensus       216 YG~tE~g~~~~~~~~~~-------------------~~~~----~~-~~G~~------~~~gy~~~~~~~~~~~~~~~~~  265 (334)
                      ||+||++...+......                   ....    .+ ..|++      ++.||+++++.+...|..++||
T Consensus       273 YG~tE~~~~~~~~~~~~~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~  352 (471)
T PRK07787        273 YGMTETLITLSTRADGERRPGWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWF  352 (471)
T ss_pred             cCccccCcceecCCCCcccCCcccccCCCcEEEEECCCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCce
Confidence            99999986433221100                   0000    01 13444      6789999999999999879999


Q ss_pred             ecCceEEEecCCcEEEEccC-CceEEEcCEEee-----------------------------------------------
Q psy12107        266 HTGDVAYYDEDGYFYIVDRT-KELIKVKGNQVA-----------------------------------------------  297 (334)
Q Consensus       266 ~TGD~~~~~~dg~~~~~GR~-~d~i~~~G~~i~-----------------------------------------------  297 (334)
                      +|||+|++++||.++++||. +|+++.+|++|+                                               
T Consensus       353 ~TGDlg~~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~l~  432 (471)
T PRK07787        353 RTGDVAVVDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGADDVAADELI  432 (471)
T ss_pred             ecCceEEEcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeCCCCCHHHHH
Confidence            99999999999999999996 899999999998                                               


Q ss_pred             --------eeeeccCcEEEeecCCCCCCchhhHHHHhhh
Q psy12107        298 --------PYKKLAGGVKFLETIPRNPAGKVLRNELKVF  328 (334)
Q Consensus       298 --------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~  328 (334)
                              +++.|.. +.++++||+|++||++|++|++.
T Consensus       433 ~~l~~~l~~~~~P~~-i~~~~~iP~~~~GKi~r~~L~~~  470 (471)
T PRK07787        433 DFVAQQLSVHKRPRE-VRFVDALPRNAMGKVLKKQLLSE  470 (471)
T ss_pred             HHHHhhcccccCCcE-EEEeccCCCCCCccccHHHhccC
Confidence                    4444555 89999999999999999999875

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=100.00  E-value=8.4e-42  Score=321.90  Aligned_cols=261  Identities=26%  Similarity=0.429  Sum_probs=217.4

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++|+|||||||.||+|+++|+++..+.......+       .....+++++.+|++|.+++.. ++.++..|+
T Consensus       176 ~~~~~~~a~il~TSGTTG~PK~V~~t~~~~~~~~~~~~~~~-------~~~~~~~~l~~~pl~~~~~~~~-~~~~l~~G~  247 (542)
T PRK06155        176 AVQPGDTAAILYTSGTTGPSKGVCCPHAQFYWWGRNSAEDL-------EIGADDVLYTTLPLFHTNALNA-FFQALLAGA  247 (542)
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEEEHHHHHHHHHHHHHhc-------CCCCCCEEEEecCHHHHHHHHH-HHHHHHcCc
Confidence            45678999999999999999999999999977655443333       2668899999999999999876 688999999


Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceee
Q psy12107        135 HMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ  214 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~  214 (334)
                      ++++.+.+++..+++.|+++++|+++++|+++..|++.........+++|.++.+|  +++++.+.+++.++.   ++++
T Consensus       248 ~~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~~~~---~v~~  322 (542)
T PRK06155        248 TYVLEPRFSASGFWPAVRRHGATVTYLLGAMVSILLSQPARESDRAHRVRVALGPG--VPAALHAAFRERFGV---DLLD  322 (542)
T ss_pred             eEEeeCCCCHHHHHHHHHHhCCcEEEchHHHHHHHHcCcCccccccCceEEEEEcC--CCHHHHHHHHHHcCC---CEEe
Confidence            99999889999999999999999999999999999887765556677888877555  578999999999864   7999


Q ss_pred             ccCCCCCCCcccccccCCC---------------------CccccCcccc---------ccccccCCccccccccCCCCc
Q psy12107        215 GYGMTETSPCTLYTRFAIP---------------------EAKLGSTGQL---------VMLGYLKNEEATKETVDSEGW  264 (334)
Q Consensus       215 ~YG~tE~g~~~~~~~~~~~---------------------~~~~~~~G~~---------~~~gy~~~~~~~~~~~~~~~~  264 (334)
                      .||+||++.++........                     +...+..|++         ++.||+++++.+...| .++|
T Consensus       323 ~YG~tE~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~-~~~~  401 (542)
T PRK06155        323 GYGSTETNFVIAVTHGSQRPGSMGRLAPGFEARVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAW-RNLW  401 (542)
T ss_pred             eecccccCccccCCCCCCCCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhh-cCCc
Confidence            9999999876553311100                     0111223432         6789999999988887 6899


Q ss_pred             eecCceEEEecCCcEEEEccCCceEEEcCEEee-----------------------------------------------
Q psy12107        265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-----------------------------------------------  297 (334)
Q Consensus       265 ~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-----------------------------------------------  297 (334)
                      |+|||++++++||+++++||.+|+|+.+|.+|+                                               
T Consensus       402 ~~TGD~~~~~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~~~~  481 (542)
T PRK06155        402 FHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVA  481 (542)
T ss_pred             EeccceEEEcCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCCHHH
Confidence            999999999999999999999999999999999                                               


Q ss_pred             ----------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhc
Q psy12107        298 ----------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGT  330 (334)
Q Consensus       298 ----------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~  330 (334)
                                +++.|.. |.++++||+|++||++|++|+++.-
T Consensus       482 ~~~~~~~~l~~~~~P~~-i~~~~~iP~t~~GKi~r~~l~~~~~  523 (542)
T PRK06155        482 LVRHCEPRLAYFAVPRY-VEFVAALPKTENGKVQKFVLREQGV  523 (542)
T ss_pred             HHHHHHhhCcCccCCcE-EEEeccCCCCcccceeHHHHHhhcc
Confidence                      4556666 9999999999999999999998764

>PRK07514 malonyl-CoA synthase; Validated

Probab=100.00  E-value=6.6e-42  Score=320.30  Aligned_cols=265  Identities=34%  Similarity=0.483  Sum_probs=223.7

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ....++++++++|||||||.||+|.++|+++..+.......+       ....++++++.+|++|..++....+.++..|
T Consensus       151 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~~~~-------~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G  223 (504)
T PRK07514        151 VPRGADDLAAILYTSGTTGRSKGAMLSHGNLLSNALTLVDYW-------RFTPDDVLIHALPIFHTHGLFVATNVALLAG  223 (504)
T ss_pred             ccCCCCCeEEEEECCCCCCCCcEEEEecHHHHHHHHHHHHHh-------CCCCccEEEEecchHHHHHHHHHHHHHHhcC
Confidence            345678999999999999999999999999988766544433       2567889999999999999887778899999


Q ss_pred             cEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCcee
Q psy12107        134 MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR  213 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~  213 (334)
                      +++++.+.+++..+++.++  ++|++.++|+++..+++........++++|.+++||+++++++.+.+.+.++.   +++
T Consensus       224 ~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~---~~~  298 (504)
T PRK07514        224 ASMIFLPKFDPDAVLALMP--RATVMMGVPTFYTRLLQEPRLTREAAAHMRLFISGSAPLLAETHREFQERTGH---AIL  298 (504)
T ss_pred             cEEEECCCCCHHHHHHHHH--hheeeecHHHHHHHHHcCCCCCcccccceeeEEecCCCCCHHHHHHHHHHhCC---cce
Confidence            9999998899999999994  79999999999999988766666778899999999999999999999999864   799


Q ss_pred             eccCCCCCCCcccccccC-----------------------CCCccccCcccc------ccccccCCccccccccCCCCc
Q psy12107        214 QGYGMTETSPCTLYTRFA-----------------------IPEAKLGSTGQL------VMLGYLKNEEATKETVDSEGW  264 (334)
Q Consensus       214 ~~YG~tE~g~~~~~~~~~-----------------------~~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~  264 (334)
                      +.||+||++.........                       ......+..|++      ++.||+++++.+.+.|..++|
T Consensus       299 ~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~  378 (504)
T PRK07514        299 ERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGF  378 (504)
T ss_pred             eecccccccccccCCccccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCC
Confidence            999999987543321100                       001112333443      688999999999999988999


Q ss_pred             eecCceEEEecCCcEEEEccCCceEEEcCEEee-----------------------------------------------
Q psy12107        265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-----------------------------------------------  297 (334)
Q Consensus       265 ~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-----------------------------------------------  297 (334)
                      |+|||+++++++|.++++||.+|+||.+|++|+                                               
T Consensus       379 ~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (504)
T PRK07514        379 FITGDLGKIDERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAA  458 (504)
T ss_pred             eeecceEEEcCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCHHH
Confidence            999999999999999999999999999999998                                               


Q ss_pred             ----------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 ----------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 ----------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                ++++|.. +++++++|+|++||++|++|++++.+
T Consensus       459 l~~~~~~~l~~~~~p~~-i~~v~~~p~t~~gK~~r~~l~~~~~~  501 (504)
T PRK07514        459 ILAALKGRLARFKQPKR-VFFVDELPRNTMGKVQKNLLREQYAD  501 (504)
T ss_pred             HHHHHHhhcccCCCCcE-EEEeccCCCCCCcceeHHHHHHHHHh
Confidence                      3445665 99999999999999999999998765

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=4.2e-42  Score=319.96  Aligned_cols=263  Identities=33%  Similarity=0.516  Sum_probs=217.1

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ....++++++++|||||||.||+|+++|+++...........       +...+|++++.+|++|++++.. ++.++..|
T Consensus       136 ~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-------~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G  207 (483)
T PRK03640        136 EEFDLDEVATIMYTSGTTGKPKGVIQTYGNHWWSAVGSALNL-------GLTEDDCWLAAVPIFHISGLSI-LMRSVIYG  207 (483)
T ss_pred             CCCCCCCeEEEEeCCCcCCCCcEEEEecHHHHHHHHHHHHhc-------CCCcCcEEEEecCHHHHHHHHH-HHHHHhcC
Confidence            345678999999999999999999999999877654443332       2678899999999999999876 67888899


Q ss_pred             cEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCcee
Q psy12107        134 MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR  213 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~  213 (334)
                      +++++.+.+++..+++.|+++++|++.++|+++..|.+..... ....++|.+++||+++++++.+.+++. +   ++++
T Consensus       208 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~-~~~~~lr~~~~~g~~~~~~~~~~~~~~-~---~~~~  282 (483)
T PRK03640        208 MRVVLVEKFDAEKINKLLQTGGVTIISVVSTMLQRLLERLGEG-TYPSSFRCMLLGGGPAPKPLLEQCKEK-G---IPVY  282 (483)
T ss_pred             CEEEecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCcc-ccCCcceEEEEcCCCCCHHHHHHHHHh-C---CCee
Confidence            9999999899999999999999999999999999998654322 334689999999999999999988864 4   5899


Q ss_pred             eccCCCCCCCcccccccCC-----------------------CCccccCcccc------ccccccCCccccccccCCCCc
Q psy12107        214 QGYGMTETSPCTLYTRFAI-----------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGW  264 (334)
Q Consensus       214 ~~YG~tE~g~~~~~~~~~~-----------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~  264 (334)
                      +.||+||++..+.......                       .+...+..|++      ++.||+++++.+...| .++|
T Consensus       283 ~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~~~  361 (483)
T PRK03640        283 QSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETF-QDGW  361 (483)
T ss_pred             eeeccCcccccccccCcccccccCCCcccccCCcEEEEecCCCcCCCCCceEEEEECcchhhhhcCCHHHHHHHH-hcCC
Confidence            9999999875332111000                       01122333444      6789999999888888 6899


Q ss_pred             eecCceEEEecCCcEEEEccCCceEEEcCEEee-----------------------------------------------
Q psy12107        265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-----------------------------------------------  297 (334)
Q Consensus       265 ~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-----------------------------------------------  297 (334)
                      |+|||++++++||.++++||.+|++|.+|++|+                                               
T Consensus       362 ~~tGDl~~~~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~  441 (483)
T PRK03640        362 FKTGDIGYLDEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKSGEVTEEELR  441 (483)
T ss_pred             eeccceEEEcCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeCCCCCHHHHH
Confidence            999999999999999999999999999999998                                               


Q ss_pred             --------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 --------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 --------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                              +++.|.. |+++++||+|++||++|++|++++++
T Consensus       442 ~~~~~~l~~~~~p~~-i~~~~~iP~t~~gK~~r~~l~~~~~~  482 (483)
T PRK03640        442 HFCEEKLAKYKVPKR-FYFVEELPRNASGKLLRHELKQLVEE  482 (483)
T ss_pred             HHHHHhccCCCCCcE-EEEeCCCCCCCccceeHHHHHHHHhh
Confidence                    4555665 99999999999999999999999874

>PRK05857 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.5e-42  Score=326.96  Aligned_cols=268  Identities=29%  Similarity=0.381  Sum_probs=212.4

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++++|||||||.||||.++|+++.++...........   .....+++.++.+|++|..++.. .+.++..|+
T Consensus       165 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~h~~~l~~-~~~~l~~G~  240 (540)
T PRK05857        165 DQGSEDPLAMIFTSGTTGEPKAVLLANRTFFAVPDILQKEGLNW---VTWVVGETTYSPLPATHIGGLWW-ILTCLMHGG  240 (540)
T ss_pred             CCCCCCeEEEEeCCCCCCCCCeEEEechhhhhhhHHhhhccccc---cccccCceeeecCCccccchHHH-HHHHhhcce
Confidence            45678999999999999999999999999877654322111000   12456788999999999998876 577788888


Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceee
Q psy12107        135 HMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ  214 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~  214 (334)
                      ++++ ...++..+++.|+++++|+++++|+++..|.+.......+++++|.+++||++++....++ .+.++   +++++
T Consensus       241 ~~v~-~~~~~~~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~-~~~~g---~~i~~  315 (540)
T PRK05857        241 LCVT-GGENTTSLLEILTTNAVATTCLVPTLLSKLVSELKSANATVPSLRLVGYGGSRAIAADVRF-IEATG---VRTAQ  315 (540)
T ss_pred             eEEe-cCCChhHHHHHHHhcCcceEEeChHHHHHHHhccccCCCcCccceEEEEcCccCCchhHHH-HHHhC---Ceeec
Confidence            8766 4468899999999999999999999999998876655678889999999999998887754 44665   48999


Q ss_pred             ccCCCCCCCcccccccCC------------------------CCc---------cccCcccc------ccccccCCcccc
Q psy12107        215 GYGMTETSPCTLYTRFAI------------------------PEA---------KLGSTGQL------VMLGYLKNEEAT  255 (334)
Q Consensus       215 ~YG~tE~g~~~~~~~~~~------------------------~~~---------~~~~~G~~------~~~gy~~~~~~~  255 (334)
                      .||+||++..........                        +..         ..+..|++      ++.||+++++.+
T Consensus       316 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t  395 (540)
T PRK05857        316 VYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERT  395 (540)
T ss_pred             ccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccch
Confidence            999999875432111000                        000         01223444      678999999999


Q ss_pred             ccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee--------------------------------------
Q psy12107        256 KETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA--------------------------------------  297 (334)
Q Consensus       256 ~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~--------------------------------------  297 (334)
                      .+.| .+|||+|||+|++|++|++++.||.+|+||++|++|+                                      
T Consensus       396 ~~~~-~~g~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~  474 (540)
T PRK05857        396 AEVL-IDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVAS  474 (540)
T ss_pred             hhhc-CCCceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeC
Confidence            9888 5899999999999999999999999999999999999                                      


Q ss_pred             ------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCCC
Q psy12107        298 ------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPK  333 (334)
Q Consensus       298 ------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~  333 (334)
                                              +++.|.. ++++++||+|++||++|++|++.+.+.+
T Consensus       475 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~P~~-v~~~~~iP~t~~GKi~r~~l~~~~~~~~  533 (540)
T PRK05857        475 AELDESAARALKHTIAARFRRESEPMARPST-IVIVTDIPRTQSGKVMRASLAAAATADK  533 (540)
T ss_pred             CCCChhhHHHHHHHHHHHHHhhhccccCCeE-EEEhhcCCCCCCcceeHHHHHHhhhhcc
Confidence                                    2234455 8999999999999999999999988765

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=100.00  E-value=1.1e-41  Score=319.86  Aligned_cols=310  Identities=27%  Similarity=0.422  Sum_probs=233.3

Q ss_pred             chhhHHHHHHhhh-CCCCceEEEEcCCCCCCCCccchhhhhcCCCC-CCCCCCCCCCCEEEEecCCCCCCCchhhhhcch
Q psy12107          5 PQLLEVGTKIGAT-LPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPP-DFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHN   82 (334)
Q Consensus         5 ~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~   82 (334)
                      ++..+.+.++..+ .+.++.+++.+.......+..+++++...... ........++++++++|||||||.||+|+++|+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~t~~  196 (517)
T PRK08008        117 AQFYPMYRQIQQEDATPLRHICLTRVALPADDGVSSFTQLKAQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHY  196 (517)
T ss_pred             cchhHHHHHHHhhccccCcEEEEecCCCcccccccCHHHHhccCCccccccCCCCCCCeEEEEECCCCCCCCcEEEEehH
Confidence            4445555555443 24456666665432212245566666532211 111234567899999999999999999999999


Q ss_pred             HHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeec
Q psy12107         83 NCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVV  162 (334)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~  162 (334)
                      ++...........       ....++++++.+|++|..+....++.++..|+++++.+.+++..+++.|+++++|++.++
T Consensus       197 ~l~~~~~~~~~~~-------~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~  269 (517)
T PRK08008        197 NLRFAGYYSAWQC-------ALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLLEKYSARAFWGQVCKYRATITECI  269 (517)
T ss_pred             HHHHHHHHHhhhc-------CCCCCCeEEEecCcHHHHHHHHHHHHHHhcCcEEEEccccCHHHHHHHHHHcCCcEEech
Confidence            9875432211111       156788999999999988877778888999999999999999999999999999999999


Q ss_pred             hHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC----------
Q psy12107        163 PSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI----------  232 (334)
Q Consensus       163 p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~----------  232 (334)
                      |++++.++...........+++.+.++ .++++++.+.+.+.++.   ++++.||+||++..+.......          
T Consensus       270 P~~~~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~  345 (517)
T PRK08008        270 PMMIRTLMVQPPSANDRQHCLREVMFY-LNLSDQEKDAFEERFGV---RLLTSYGMTETIVGIIGDRPGDKRRWPSIGRP  345 (517)
T ss_pred             HHHHHHHHhCCCccccccccceeeEEe-cCCCHHHHHHHHHHhCC---eEEeeccccccccccccCCccccccCCccccC
Confidence            999999987654433445678877775 47899999999998864   8999999999975333211100          


Q ss_pred             -------------CCccccCccc---------cccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEE
Q psy12107        233 -------------PEAKLGSTGQ---------LVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIK  290 (334)
Q Consensus       233 -------------~~~~~~~~G~---------~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~  290 (334)
                                   .+...+..|+         .++.||+++++.+.+.+..+|||+|||++++++||+++++||.+|+||
T Consensus       346 ~~g~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~d~i~  425 (517)
T PRK08008        346 GFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDEEGFFYFVDRRCNMIK  425 (517)
T ss_pred             CCCcEEEEECCCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECCCCcEEEeecccceEE
Confidence                         0111222333         367799999999999998899999999999999999999999999999


Q ss_pred             EcCEEee---------------------------------------------------------eeeeccCcEEEeecCC
Q psy12107        291 VKGNQVA---------------------------------------------------------PYKKLAGGVKFLETIP  313 (334)
Q Consensus       291 ~~G~~i~---------------------------------------------------------~~~~~~~~i~~v~~lP  313 (334)
                      .+|++|+                                                         +++.|.. ++++++||
T Consensus       426 ~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~P~~-~~~v~~iP  504 (517)
T PRK08008        426 RGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFAFCEQNMAKFKVPSY-LEIRKDLP  504 (517)
T ss_pred             eCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCCCHHHHHHHHHhhcccccCCcE-EEEeccCC
Confidence            9999998                                                         4455666 99999999


Q ss_pred             CCCCchhhHHHHh
Q psy12107        314 RNPAGKVLRNELK  326 (334)
Q Consensus       314 ~t~~GKi~r~~l~  326 (334)
                      +|++||++|+.|+
T Consensus       505 ~t~~gK~~r~~l~  517 (517)
T PRK08008        505 RNCSGKIIKKNLK  517 (517)
T ss_pred             CCCccceehhhcC
Confidence            9999999999875

>PRK13388 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=7.8e-42  Score=321.99  Aligned_cols=264  Identities=25%  Similarity=0.373  Sum_probs=212.5

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++++|||||||.||+|.++|+++..........+       ....+|++++.+|++|.+++...++.++..|+
T Consensus       146 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-------~~~~~d~~l~~~p~~~~~~~~~~~~~~l~~G~  218 (540)
T PRK13388        146 EVDAMDPFMLIFTSGTTGAPKAVRCSHGRLAFAGRALTERF-------GLTRDDVCYVSMPLFHSNAVMAGWAPAVASGA  218 (540)
T ss_pred             CCCCCCeEEEEECCCCCCCCCEEEecHHHHHHHHHHHHHHh-------CCCCCCEEEEeeCchhhcchHHHHHHHHHcCc
Confidence            45679999999999999999999999999987666554443       26678999999999999988776677889999


Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceee
Q psy12107        135 HMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ  214 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~  214 (334)
                      ++++.+.+++..+++.|+++++|++..+|+.+..+............+++. ++ |+++++...+.+.+.++.   ++++
T Consensus       219 ~~v~~~~~~~~~~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~~~~~~l~~-~~-G~~~~~~~~~~~~~~~~~---~l~~  293 (540)
T PRK13388        219 AVALPAKFSASGFLDDVRRYGATYFNYVGKPLAYILATPERPDDADNPLRV-AF-GNEASPRDIAEFSRRFGC---QVED  293 (540)
T ss_pred             EEEECCCCCHHHHHHHHHHhCCeEEEehHHHHHHHHhCCCCccccccceEE-EE-CCCCCHHHHHHHHHHhCC---ceec
Confidence            999988889999999999999999999999999988765432223345663 33 567788888999988864   7999


Q ss_pred             ccCCCCCCCcccccccCCC-------------------Cc-------------cccCc-------cccccccccCCcccc
Q psy12107        215 GYGMTETSPCTLYTRFAIP-------------------EA-------------KLGST-------GQLVMLGYLKNEEAT  255 (334)
Q Consensus       215 ~YG~tE~g~~~~~~~~~~~-------------------~~-------------~~~~~-------G~~~~~gy~~~~~~~  255 (334)
                      .||+||++.+.........                   +.             ..+..       |..++.||+++++.+
T Consensus       294 ~YG~tE~~~~~~~~~~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t  373 (540)
T PRK13388        294 GYGSSEGAVIVVREPGTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEAT  373 (540)
T ss_pred             ccccccccceeecCCCCCCCCCCCCCCCcEEEcCCCCccccceeccCccccccCCCcceEEEEecCCcccccccCChHHH
Confidence            9999999865543210000                   00             01122       444677999999999


Q ss_pred             ccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee--------------------------------------
Q psy12107        256 KETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA--------------------------------------  297 (334)
Q Consensus       256 ~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~--------------------------------------  297 (334)
                      .+.+ .+|||+|||+|++++||+++++||.+|+||++|++|+                                      
T Consensus       374 ~~~~-~~g~~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~  452 (540)
T PRK13388        374 AERM-RHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLR  452 (540)
T ss_pred             HHHh-hcCceeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEEC
Confidence            8888 5899999999999999999999999999999999999                                      


Q ss_pred             ---------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        298 ---------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       298 ---------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                                           +++.|.. ++++++||+|++||++|++|++...+.
T Consensus       453 ~~~~~~~~~l~~~l~~~~~l~~~~~P~~-~~~v~~iP~t~~GKv~R~~L~~~~~~~  507 (540)
T PRK13388        453 DGATFDPDAFAAFLAAQPDLGTKAWPRY-VRIAADLPSTATNKVLKRELIAQGWAT  507 (540)
T ss_pred             CCCcCCHHHHHHHHHhhccCCcccCCcE-EEEeccCCCCCcceeeHHhHHHhccCC
Confidence                                 3334555 889999999999999999999986543

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1e-41  Score=320.49  Aligned_cols=261  Identities=31%  Similarity=0.482  Sum_probs=219.3

Q ss_pred             CCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEE
Q psy12107         57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHM  136 (334)
Q Consensus        57 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~  136 (334)
                      .++++++++|||||||.||+|.++|.++..+.......+       ....++++++..|++|.+++.  ++.++..|+++
T Consensus       166 ~~~~~a~i~~TSGtTG~pk~v~~s~~~l~~~~~~~~~~~-------~~~~~~~~l~~~pl~~~~g~~--~~~~l~~G~~~  236 (524)
T PRK06188        166 LPPDIAGLAYTGGTTGKPKGVMGTHRSIATMAQIQLAEW-------EWPADPRFLMCTPLSHAGGAF--FLPTLLRGGTV  236 (524)
T ss_pred             CCCCeEEEEeCCCCCCCCceeeeehHHHHHHHHHHHhhc-------CCCcCcEEEEecCchhhhhHH--HHHHHHcCCEE
Confidence            456799999999999999999999999988776655443       256788999999999998864  56778899999


Q ss_pred             EEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeecc
Q psy12107        137 ITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGY  216 (334)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~Y  216 (334)
                      ++.+.+++..+++.++++++|+++++|+++..|++.......+++++|.+++||++++++..+.+.+.++.   .+++.|
T Consensus       237 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~---~~~~~Y  313 (524)
T PRK06188        237 IVLAKFDPAEVLRAIEEQRITATFLVPTMIYALLDHPDLRTRDLSSLETVYYGASPMSPVRLAEAIERFGP---IFAQYY  313 (524)
T ss_pred             EEcCCCCHHHHHHHHHHhCCEEEEehHHHHHHHHhCcCccCCCCcceeEEEEcCCCCCHHHHHHHHHHhCc---hhhhee
Confidence            99999999999999999999999999999999998876666788899999999999999999999888874   689999


Q ss_pred             CCCCCCCcccccccCC----------------------------CCccccCcccc------ccccccCCccccccccCCC
Q psy12107        217 GMTETSPCTLYTRFAI----------------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSE  262 (334)
Q Consensus       217 G~tE~g~~~~~~~~~~----------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~  262 (334)
                      |+||++..+.......                            .+...+..|++      ++.||+++++.+...+ .+
T Consensus       314 G~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~  392 (524)
T PRK06188        314 GQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAF-RD  392 (524)
T ss_pred             CccccCCceeecCchhccccccccCCccccccCCcEEEEEcCCCCCCCCCCeeEEEEECcchhhhhcCChHHhhhhh-cC
Confidence            9999965443221100                            00112233333      6789999999888888 68


Q ss_pred             CceecCceEEEecCCcEEEEccCCceEEEcCEEee---------------------------------------------
Q psy12107        263 GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA---------------------------------------------  297 (334)
Q Consensus       263 ~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~---------------------------------------------  297 (334)
                      |||+|||++++++||.+++.||.+|+|+++|++|+                                             
T Consensus       393 g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  472 (524)
T PRK06188        393 GWLHTGDVAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDA  472 (524)
T ss_pred             CceeecceEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCCH
Confidence            99999999999999999999999999999999998                                             


Q ss_pred             ------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 ------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 ------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                  +++.|.. |+++++||+|++||++|++|++.+.+
T Consensus       473 ~~l~~~~~~~l~~~~~p~~-i~~v~~~P~t~~gKi~r~~L~~~~~~  517 (524)
T PRK06188        473 AELQAHVKERKGSVHAPKQ-VDFVDSLPLTALGKPDKKALRARYWE  517 (524)
T ss_pred             HHHHHHHHHhcccCCCCcE-EEEecCCCCCccccccHHHHHHHHHh
Confidence                        3345555 99999999999999999999999754

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.4e-42  Score=325.33  Aligned_cols=262  Identities=23%  Similarity=0.371  Sum_probs=218.9

Q ss_pred             CCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEE
Q psy12107         58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMI  137 (334)
Q Consensus        58 ~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~  137 (334)
                      .+|+++++|||||||.||+|+++|+++..+.......+       .....|++++.+|++|.+++...++.++..|++++
T Consensus       175 ~~~~a~il~TSGTTG~PKgv~~~~~~~~~~~~~~~~~~-------~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~  247 (534)
T PRK05852        175 RPDDAMIMFTGGTTGLPKMVPWTHANIASSVRAIITGY-------RLSPRDATVAVMPLYHGHGLIAALLATLASGGAVL  247 (534)
T ss_pred             CCCceEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-------CCCCcceEEEecCcchhHHHHHHHHHHHhcCCeEE
Confidence            46889999999999999999999999987776554433       25678899999999999999887888999999988


Q ss_pred             EcC--CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCC--ccccccceeeeecCCCCCHHHHHHHHHHhccCCCcee
Q psy12107        138 TIP--KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVT--PEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR  213 (334)
Q Consensus       138 ~~~--~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~--~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~  213 (334)
                      +.+  .+++..+++.|+++++|+++++|+++..|.+.....  ....+++|.++++|+++++++++.+.+.++.   +++
T Consensus       248 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~---~v~  324 (534)
T PRK05852        248 LPARGRFSAHTFWDDIKAVGATWYTAVPTIHQILLERAATEPSGRKPAALRFIRSCSAPLTAETAQALQTEFAA---PVV  324 (534)
T ss_pred             eCCCcCcCHHHHHHHHHHcCCcEEEcChHHHHHHHhhcccccccccCCCeeEEEECCCCCCHHHHHHHHHHhCC---Chh
Confidence            754  478999999999999999999999999998765422  2456789999999999999999999999974   799


Q ss_pred             eccCCCCCCCcccccccC------C-----------------------CCccccCcccc------ccccccCCccccccc
Q psy12107        214 QGYGMTETSPCTLYTRFA------I-----------------------PEAKLGSTGQL------VMLGYLKNEEATKET  258 (334)
Q Consensus       214 ~~YG~tE~g~~~~~~~~~------~-----------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~  258 (334)
                      +.||+||++...+.....      .                       .+...+..|++      +++||+++++.+.+.
T Consensus       325 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~  404 (534)
T PRK05852        325 CAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAAN  404 (534)
T ss_pred             hccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEECCCCCCCCCCCceEEEEecCcccchhcCCcccchhh
Confidence            999999988644421100      0                       00112223333      789999999999988


Q ss_pred             cCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee-----------------------------------------
Q psy12107        259 VDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-----------------------------------------  297 (334)
Q Consensus       259 ~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-----------------------------------------  297 (334)
                      | .+|||+|||++++|+||++++.||.+|+|+.+|.+|+                                         
T Consensus       405 ~-~~g~~~TGD~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~  483 (534)
T PRK05852        405 F-TDGWLRTGDLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESA  483 (534)
T ss_pred             h-cCCCcccCceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCC
Confidence            8 5899999999999999999999999999999999999                                         


Q ss_pred             ----------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 ----------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 ----------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                      ++++|.. ++++++||+|++||++|++|++.+.+
T Consensus       484 ~~~~~~i~~~~~~~l~~~~~P~~-i~~v~~iP~t~~GKi~r~~L~~~~~~  532 (534)
T PRK05852        484 PPTAEELVQFCRERLAAFEIPAS-FQEASGLPHTAKGSLDRRAVAEQFGH  532 (534)
T ss_pred             CCCHHHHHHHHHHhcccccCCeE-EEEhhhcCCCCCccccHHHHHHHhcc
Confidence                            5556666 99999999999999999999998754

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.2e-42  Score=326.56  Aligned_cols=264  Identities=22%  Similarity=0.315  Sum_probs=205.7

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCC-CCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDT-SQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ...++|+++|+|||||||.||||+++|+++..+.......+       ... .+|++++.+|++|.+++.. ++.++..|
T Consensus       148 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-------~~~~~~d~~l~~~pl~h~~g~~~-~~~~l~~G  219 (525)
T PRK05851        148 PPDSGGPAVLQGTAGSTGTPRTAILSPGAVLSNLRGLNARV-------GLDAATDVGCSWLPLYHDMGLAF-LLTAALAG  219 (525)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEecHHHHHHHHHHHHHHh-------CCCCCCCeEEEcCCCccCccHHH-HHHHHHcC
Confidence            34678999999999999999999999999988776554433       245 7899999999999999975 67889999


Q ss_pred             cEEEEcCC--C--CHHHHHHHHHHcCCeEEeechHHHHHHhcCCC-CCccccccceeeeecCCCCCHHHHHHHHHH---h
Q psy12107        134 MHMITIPK--F--TPETYIECVVKYKPTILFVVPSLLLFLASHPA-VTPEHLASIREVTCGAAPATKSLIDKFKQK---V  205 (334)
Q Consensus       134 ~~~~~~~~--~--~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~-~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~---~  205 (334)
                      +++++.+.  +  ++..+++.++++++|++...|.++..+..... ....++++||.+++||+++++++.+++.+.   +
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~  299 (525)
T PRK05851        220 APLWLAPTTAFSASPFRWLSWLSDSRATLTAAPNFAYNLIGKYARRVSDVDLGALRVALNGGEPVDCDGFERFATAMAPF  299 (525)
T ss_pred             CeEEEcCHHHHHHCHHHHHHHHHHhCCeEEeCCcHHHHHHHHhhccccCCCHHHhheeEeccccCCHHHHHHHHHHHhhc
Confidence            99998763  4  57889999999999988665555555543221 234567899999999999999999998875   3


Q ss_pred             ccCCCceeeccCCCCCCCccccccc-----------------------CC---------------CCccccCcccc----
Q psy12107        206 QREDITIRQGYGMTETSPCTLYTRF-----------------------AI---------------PEAKLGSTGQL----  243 (334)
Q Consensus       206 ~~~~~~i~~~YG~tE~g~~~~~~~~-----------------------~~---------------~~~~~~~~G~~----  243 (334)
                      |.+...++|.||+||++..++....                       +.               .+...+..|++    
T Consensus       300 g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g  379 (525)
T PRK05851        300 GFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRG  379 (525)
T ss_pred             CCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEec
Confidence            4322359999999999754432110                       00               00112334443    


Q ss_pred             --ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee------------------------
Q psy12107        244 --VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA------------------------  297 (334)
Q Consensus       244 --~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~------------------------  297 (334)
                        ++.||+++++.+     .++||+|||+++++ +|.++++||.||+||++|++|+                        
T Consensus       380 ~~~~~GY~~~~~~~-----~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~  453 (525)
T PRK05851        380 ASMMSGYLGQAPID-----PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGT  453 (525)
T ss_pred             CchhhccccCCccC-----CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEe
Confidence              678999988632     47899999999996 8999999999999999999999                        


Q ss_pred             --------------------------------ee--eeccCcEEEee--cCCCCCCchhhHHHHhhhhcCCC
Q psy12107        298 --------------------------------PY--KKLAGGVKFLE--TIPRNPAGKVLRNELKVFGTNPK  333 (334)
Q Consensus       298 --------------------------------~~--~~~~~~i~~v~--~lP~t~~GKi~r~~l~~~~~~~~  333 (334)
                                                      .+  ++|.. +++++  +||+|++|||+|++|++.+.+.+
T Consensus       454 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~P~~-~~~v~~~~lP~t~~GKi~r~~L~~~~~~~~  524 (525)
T PRK05851        454 GEGSARPGLVIAAEFRGPDEAGARSEVVQRVASECGVVPSD-VVFVAPGSLPRTSSGKLRRLAVKRSLEAAD  524 (525)
T ss_pred             cCCCCceeEEEEEEecCcchHHHHHHHHHHHHHHhCCCccE-EEEECCCCcCcCcchHHHHHHHHHHHHhcC
Confidence                                            12  45666 99998  89999999999999999887654

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=2.3e-41  Score=320.51  Aligned_cols=301  Identities=29%  Similarity=0.481  Sum_probs=238.5

Q ss_pred             CCCceEEEEcCCCCCCCCccchhhhhcCC----CC--CCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhc
Q psy12107         19 PNFRGTIVVGGEHDKSKNIFGFKQLVTSQ----PP--DFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV   92 (334)
Q Consensus        19 ~~~~~ii~~~~~~~~~~~~~~~~~ll~~~----~~--~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~   92 (334)
                      +..+.++.++...  ..+...++++....    ..  ........++++++++|||||||.||+|.++|+++..+.....
T Consensus       155 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~PK~v~~s~~~l~~~~~~~~  232 (559)
T PRK08315        155 PELRRVIFLGDEK--HPGMLNFDELLALGRAVDDAELAARQATLDPDDPINIQYTSGTTGFPKGATLTHRNILNNGYFIG  232 (559)
T ss_pred             CCceeEEeecccC--CcccccHHHHHhhccccccccccchhccCCCCCcEEEEEcCCCCCCcceEEeeHHHHHHHHHHHH
Confidence            4556666665432  12345666665211    01  1112345678999999999999999999999999987766554


Q ss_pred             cCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEE-cCCCCHHHHHHHHHHcCCeEEeechHHHHHHhc
Q psy12107         93 HPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMIT-IPKFTPETYIECVVKYKPTILFVVPSLLLFLAS  171 (334)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~  171 (334)
                      ...       ...++++++...|++|.+++...++.++..|+++++ ...+++..+++.++++++|+++++|+++..+..
T Consensus       233 ~~~-------~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~~~~  305 (559)
T PRK08315        233 EAM-------KLTEEDRLCIPVPLYHCFGMVLGNLACVTHGATMVYPGEGFDPLATLAAVEEERCTALYGVPTMFIAELD  305 (559)
T ss_pred             Hhc-------CCCCCceEEEecCcHHHHHHHHHHHHHHhccceEEEecCCCCHHHHHHHHHHcCCeEEecchHHHHHHHh
Confidence            433       267889999999999999988878899999999984 456899999999999999999999999998887


Q ss_pred             CCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC-------------------
Q psy12107        172 HPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI-------------------  232 (334)
Q Consensus       172 ~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-------------------  232 (334)
                      ........+++||.+++||+++++++.+.+.+.|+.  .++++.||+||++.+++......                   
T Consensus       306 ~~~~~~~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~--~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~  383 (559)
T PRK08315        306 HPDFARFDLSSLRTGIMAGSPCPIEVMKRVIDKMHM--SEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVK  383 (559)
T ss_pred             CcccCCCCchhhheeEecCCCCCHHHHHHHHHHcCC--cceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEE
Confidence            766556678899999999999999999999999973  46999999999986554321110                   


Q ss_pred             -------CCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee--
Q psy12107        233 -------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA--  297 (334)
Q Consensus       233 -------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~--  297 (334)
                             .....+..|++      ++.||+++++.+...+..++||+|||++++++||.++++||.+|+++.+|++|+  
T Consensus       384 i~d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~  463 (559)
T PRK08315        384 IVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGENIYPR  463 (559)
T ss_pred             EEcCccCCcCCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcCCceEEEEeeccceEEECCEEEcHH
Confidence                   00112333443      678999999999888878999999999999999999999999999999999998  


Q ss_pred             -------------------------------------------------------eeeeccCcEEEeecCCCCCCchhhH
Q psy12107        298 -------------------------------------------------------PYKKLAGGVKFLETIPRNPAGKVLR  322 (334)
Q Consensus       298 -------------------------------------------------------~~~~~~~~i~~v~~lP~t~~GKi~r  322 (334)
                                                                             ++++|.. |+++++||+|++||++|
T Consensus       464 eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~~P~~-i~~v~~lP~t~~GK~~r  542 (559)
T PRK08315        464 EIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDVRDFCRGKIAHYKIPRY-IRFVDEFPMTVTGKIQK  542 (559)
T ss_pred             HHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCCCHHHHHHHHHhhcccccCCcE-EEEcccCCCCCCCceeH
Confidence                                                                   4445555 99999999999999999


Q ss_pred             HHHhhhhcC
Q psy12107        323 NELKVFGTN  331 (334)
Q Consensus       323 ~~l~~~~~~  331 (334)
                      .+|+++..+
T Consensus       543 ~~L~~~~~~  551 (559)
T PRK08315        543 FKMREMMIE  551 (559)
T ss_pred             HHHHHHHHh
Confidence            999988643

>KOG1175|consensus

Probab=100.00  E-value=4.3e-42  Score=313.20  Aligned_cols=286  Identities=23%  Similarity=0.360  Sum_probs=233.8

Q ss_pred             cchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchh
Q psy12107         38 FGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF  117 (334)
Q Consensus        38 ~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~  117 (334)
                      ..+++.+.......++..++.+||.+|+|||||||.||++.+++....-.........+      +..+.|++++.....
T Consensus       218 ~~~~~~~~~a~~~~~~~~~~~edpl~IlfTSGtTg~PK~v~ht~~g~ll~~~~~~~~~~------d~q~~dv~~~~~d~G  291 (626)
T KOG1175|consen  218 LFWSLELKKASPEHPCVPVKAEDPLFILFTSGTTGKPKGVIHTTGGYLLGAALTSRYHF------DLQPSDVLWCASDLG  291 (626)
T ss_pred             ccHHHHhhhcCCCCCceecCccCceEEEecCCCCCCCCceeeccCcchHHHhhhcceec------cCCCcceEEEecccC
Confidence            34444444444444467888999999999999999999999999986554443333321      478999999999999


Q ss_pred             hhhHHHHHHHHHHHhCcEEEEcC--CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCC--CccccccceeeeecCCCC
Q psy12107        118 HIYGFNGILNVVMMYGMHMITIP--KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV--TPEHLASIREVTCGAAPA  193 (334)
Q Consensus       118 ~~~~~~~~~~~~~~~G~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~--~~~~~~~lr~v~~~G~~l  193 (334)
                      |+.+....++.++..|+++++.+  ++++..+++.+.++++|++++.|+.++.|.+....  ..+.+++||.+.++||++
T Consensus       292 Wi~g~~~~~~gpl~~Ga~~vl~~g~p~~~~~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~~~~~~~sLk~~~S~Gepi  371 (626)
T KOG1175|consen  292 WITGHSYVLYGPLLNGATVVLYEGPPFDPGRIWKILDKYKVTVLYTAPTAYRLLRRLGQEDVTSYSLKSLRTCGSVGEPI  371 (626)
T ss_pred             eeeccchhhhhhhhcCcEEEEEcCCCCChhhhhhhHhhcceEEEEeccHHHHHHHHhccccccccccceEEEEeecCccC
Confidence            99999998889999999999875  46999999999999999999999999988765443  334456799999999999


Q ss_pred             CHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCCCCccccCcccc------------------------------
Q psy12107        194 TKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQL------------------------------  243 (334)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~G~~------------------------------  243 (334)
                      .++..+++.+.++. . +|++.||+||+|..++.+.....+..+++.+.+                              
T Consensus       372 ~~~~~ew~~~~~~~-~-pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~~~~~~~~~G~l~~~~~  449 (626)
T KOG1175|consen  372 NPEAWEWWKRVTGL-D-PIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGNELPPSTGNGELRLKPP  449 (626)
T ss_pred             CcchHHHHHHhcCc-c-chhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEECCCCCCcCCCCceeEEEEeCC
Confidence            99999999999985 2 699999999999876655444311233332222                              


Q ss_pred             ----ccccccCCccccccccCC--CCceecCceEEEecCCcEEEEccCCceEEEcCEEee--------------------
Q psy12107        244 ----VMLGYLKNEEATKETVDS--EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA--------------------  297 (334)
Q Consensus       244 ----~~~gy~~~~~~~~~~~~~--~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~--------------------  297 (334)
                          .+++||+|++....+...  .|+|.|||.+++|+||++++.||.||+||++|.+++                    
T Consensus       450 ~P~~~~r~~~~n~erf~~~yf~k~pg~y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvV  529 (626)
T KOG1175|consen  450 WPPGMFRTLWGNHERFRAAYFKKFPGYYFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVV  529 (626)
T ss_pred             CCccccccccCCHHHhhhhhcccCCceEEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeee
Confidence                678999999844443333  689999999999999999999999999999999999                    


Q ss_pred             ----------------------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        298 ----------------------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       298 ----------------------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                                                              |+..|+. |.++++||+|.+|||.|+.||++..+.
T Consensus       530 g~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~~VR~~igp~a~P~~-I~~v~~LPkTrSGKimRr~lrki~~g~  603 (626)
T KOG1175|consen  530 GSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVKHVRSVIGPYAVPRL-IVFVPGLPKTRSGKIMRRALRKIASGK  603 (626)
T ss_pred             cCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHHHHHhhcCcccccce-eEecCCCCccccchhHHHHHHHHhccC
Confidence                                                    8888998 999999999999999999999998764

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.1e-41  Score=318.31  Aligned_cols=312  Identities=27%  Similarity=0.417  Sum_probs=235.1

Q ss_pred             cchhhHHHHHHhhhCCCCceEEEEcCCCCC----CCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhh
Q psy12107          4 IPQLLEVGTKIGATLPNFRGTIVVGGEHDK----SKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKL   79 (334)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~   79 (334)
                      +.++.+.+.++.+..+.++.++++.+....    ......|++++.............++++++++|||||||.||+|++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv~~  197 (542)
T PRK06018        118 DLTFVPILEKIADKLPSVERYVVLTDAAHMPQTTLKNAVAYEEWIAEADGDFAWKTFDENTAAGMCYTSGTTGDPKGVLY  197 (542)
T ss_pred             ccccHHHHHHHHhhCCCccEEEEecccccccccCccccccHHHHhccCCcccCcccCCccceeeEEecCCCCCCCcEEEE
Confidence            445566677777777777777776543211    1134467777643332222245677899999999999999999999


Q ss_pred             cchHHHHH-hhh-hccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcC-CCCHHHHHHHHHHcCC
Q psy12107         80 SHNNCAVN-LEQ-CVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKP  156 (334)
Q Consensus        80 t~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~  156 (334)
                      +|++.... ... ....+       .....++++...|++|.+++.. .+.++..|+++++.. .+++..+++.++++++
T Consensus       198 s~~~~~~~~~~~~~~~~~-------~~~~~d~~~~~~p~~h~~~~~~-~~~~~~~g~~~v~~~~~~~~~~~~~~l~~~~~  269 (542)
T PRK06018        198 SHRSNVLHALMANNGDAL-------GTSAADTMLPVVPLFHANSWGI-AFSAPSMGTKLVMPGAKLDGASVYELLDTEKV  269 (542)
T ss_pred             echhHHHHHHHHhhhhhc-------CCCCCCEEEEecCHHHHhhhHH-HHhhhhcCceEEccCcCCCHHHHHHHHHhcCC
Confidence            99974322 211 11111       2567899999999999998876 456788899988764 5789999999999999


Q ss_pred             eEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC----
Q psy12107        157 TILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI----  232 (334)
Q Consensus       157 t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~----  232 (334)
                      |+++++|+++..|.+.......++++||.++++|+++++++.++|++ ++   +++++.||+||++.+++.+....    
T Consensus       270 t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~-~~---~~~~~~YG~tE~~~~~~~~~~~~~~~~  345 (542)
T PRK06018        270 TFTAGVPTVWLMLLQYMEKEGLKLPHLKMVVCGGSAMPRSMIKAFED-MG---VEVRHAWGMTEMSPLGTLAALKPPFSK  345 (542)
T ss_pred             ceeecCcHHHHHHHhcccccCCCcccceEEEEcCCCCCHHHHHHHHH-hC---CCeEeeecccccCcccccccCcccccc
Confidence            99999999999998776655667889999999999999999999999 75   47999999999986544321000    


Q ss_pred             --------------------------CC---ccc--cCcccc------ccccccCCccccccccCCCCceecCceEEEec
Q psy12107        233 --------------------------PE---AKL--GSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDE  275 (334)
Q Consensus       233 --------------------------~~---~~~--~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~  275 (334)
                                                ..   ...  +..|++      ++.||+++   +...++.++||+|||++++++
T Consensus       346 ~~~~~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~---~~~~~~~~~~~~TGDl~~~~~  422 (542)
T PRK06018        346 LPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYRV---DGEILDDDGFFDTGDVATIDA  422 (542)
T ss_pred             CCchhhhhccccCCCCCCCcEEEEECCCCCCCCCCCCceeEEEEecCCcchhhhcC---cccEecCCcEEEcCCEEEEcC
Confidence                                      00   000  012333      56789883   234455789999999999999


Q ss_pred             CCcEEEEccCCceEEEcCEEee---------------------------------------------------------e
Q psy12107        276 DGYFYIVDRTKELIKVKGNQVA---------------------------------------------------------P  298 (334)
Q Consensus       276 dg~~~~~GR~~d~i~~~G~~i~---------------------------------------------------------~  298 (334)
                      +|++++.||.+|+|+.+|.+|+                                                         +
T Consensus       423 ~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~  502 (542)
T PRK06018        423 YGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATREEILKYMDGKIAK  502 (542)
T ss_pred             CccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCCCCHHHHHHHHHhhCcc
Confidence            9999999999999999999998                                                         3


Q ss_pred             eeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        299 YKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       299 ~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                      ++.|.. ++++++||+|++||++|++||+.+.+
T Consensus       503 ~~~P~~-i~~v~~iP~t~~GKi~r~~L~~~~~~  534 (542)
T PRK06018        503 WWMPDD-VAFVDAIPHTATGKILKTALREQFKD  534 (542)
T ss_pred             ccCCcE-EEEeccCCCCCcchhhHHHHHHHHhc
Confidence            445555 99999999999999999999998865

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=2.1e-41  Score=320.78  Aligned_cols=270  Identities=34%  Similarity=0.554  Sum_probs=216.6

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCC--CC-CCCCCceEEEecchhhhhHHHHHHHHHHH
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHI--PT-SDTSQETVLSVLPFFHIYGFNGILNVVMM  131 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~l~~~p~~~~~~~~~~~~~~~~  131 (334)
                      ....+++++|+|||||||.||+|+++|+++..+.......+.....  .. ....++++++.+|++|.+++...++..+.
T Consensus       203 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~g~~~~~~~~~~  282 (562)
T PRK12492        203 PVGLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVRACLSQLGPDGQPLMKEGQEVMIAPLPLYHIYAFTANCMCMMV  282 (562)
T ss_pred             CCCcCCeEEEEeCCCCCCCCceEEEechhHHHHHHHHHHHHhcccccccccccCCCeEEEEecchHHHHHHHHHHHHHhh
Confidence            4567899999999999999999999999997766544332211000  00 01124578899999999998776777778


Q ss_pred             hCcEEEEcC-CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107        132 YGMHMITIP-KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI  210 (334)
Q Consensus       132 ~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~  210 (334)
                      .|..+++.. .+++..+++.|+++++|++.++|+++..|.+.......+++++|.+++||+++++++.+.|++.++.   
T Consensus       283 ~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~---  359 (562)
T PRK12492        283 SGNHNVLITNPRDIPGFIKELGKWRFSALLGLNTLFVALMDHPGFKDLDFSALKLTNSGGTALVKATAERWEQLTGC---  359 (562)
T ss_pred             cCceEEEecCCcCHHHHHHHHHHhCCceeeCcHHHHHHHHhCcCcccccccceeEEEeccccCCHHHHHHHHHHhCC---
Confidence            888766554 4689999999999999999999999999988766556678899999999999999999999998864   


Q ss_pred             ceeeccCCCCCCCcccccccCC-----------------------CCccccCcccc------ccccccCCccccccccCC
Q psy12107        211 TIRQGYGMTETSPCTLYTRFAI-----------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDS  261 (334)
Q Consensus       211 ~i~~~YG~tE~g~~~~~~~~~~-----------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~  261 (334)
                      ++++.||+||++.+++.+....                       .....+..|++      ++.||+++++.+...|..
T Consensus       360 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~  439 (562)
T PRK12492        360 TIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDA  439 (562)
T ss_pred             ceeeccCccccCceeeecCCcccccCCccceecCCCEEEEECCCCCCCCCCCceEEEEeCCccccccccCchhhhhcccC
Confidence            7999999999986554322110                       01112333433      678999999999998877


Q ss_pred             CCceecCceEEEecCCcEEEEccCCceEEEcCEEee--------------------------------------------
Q psy12107        262 EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA--------------------------------------------  297 (334)
Q Consensus       262 ~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~--------------------------------------------  297 (334)
                      ++||+|||+|+++++|.+++.||.+|+|+++|++|+                                            
T Consensus       440 ~g~~~TGD~g~~~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  519 (562)
T PRK12492        440 EGWFKTGDIAVIDPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDPGLSV  519 (562)
T ss_pred             CCceecCcEEEECCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCCCH
Confidence            899999999999999999999999999999999998                                            


Q ss_pred             ------------eeeeccCcEEEeecCCCCCCchhhHHHHhhh
Q psy12107        298 ------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVF  328 (334)
Q Consensus       298 ------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~  328 (334)
                                  +++.|.. +.++++||+|++||++|++|+++
T Consensus       520 ~~i~~~~~~~l~~~~~P~~-i~~~~~~P~t~~GK~~r~~L~~~  561 (562)
T PRK12492        520 EELKAYCKENFTGYKVPKH-IVLRDSLPMTPVGKILRRELRDI  561 (562)
T ss_pred             HHHHHHHHHhcccccCCcE-EEEeccCCCCCCCceeHHHHHhh
Confidence                        4445555 99999999999999999999975

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.1e-41  Score=322.58  Aligned_cols=268  Identities=31%  Similarity=0.488  Sum_probs=224.4

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++++|||||||.||+|.++|+++..+.......+       ....+|++++.+|++|.++....++.++..|+
T Consensus       197 ~~~~~~~a~i~~TSGsTG~PK~v~~s~~~l~~~~~~~~~~~-------~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~  269 (558)
T PRK12583        197 SLDRDDPINIQYTSGTTGFPKGATLSHHNILNNGYFVAESL-------GLTEHDRLCVPVPLYHCFGMVLANLGCMTVGA  269 (558)
T ss_pred             ccCCCCcEEEEECCCCCCCCceEEeeHHHHHHHHHHHHHHh-------CCCCCCeEEEecCchhhhhHHHHHHHHHhcCc
Confidence            34578999999999999999999999999987766544433       25678899999999999999888888899999


Q ss_pred             EEEEcC-CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCcee
Q psy12107        135 HMITIP-KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR  213 (334)
Q Consensus       135 ~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~  213 (334)
                      ++++.. .+++..+++.++++++|+++++|+++..+.........++++||.+++||+++++++.+++.+.++  ...++
T Consensus       270 ~v~~~~~~~~~~~~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~--~~~i~  347 (558)
T PRK12583        270 CLVYPNEAFDPLATLQAVEEERCTALYGVPTMFIAELDHPQRGNFDLSSLRTGIMAGAPCPIEVMRRVMDEMH--MAEVQ  347 (558)
T ss_pred             eEEeecCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHccccccCCCchhheEEEecCCCCCHHHHHHHHHHcC--Cccee
Confidence            988643 578999999999999999999999999888766555567889999999999999999999999997  34699


Q ss_pred             eccCCCCCCCcccccccCC-------------------------CCccccCcccc------ccccccCCccccccccCCC
Q psy12107        214 QGYGMTETSPCTLYTRFAI-------------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSE  262 (334)
Q Consensus       214 ~~YG~tE~g~~~~~~~~~~-------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~  262 (334)
                      +.||+||++.+...+....                         .+...+..|++      ++.||+++++.+...+..+
T Consensus       348 ~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~  427 (558)
T PRK12583        348 IAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDED  427 (558)
T ss_pred             ccccccccccceeccCcccccccccCCCCccCCCCeEEEECCCCCCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCC
Confidence            9999999987655332110                         00112333444      6789999999988888778


Q ss_pred             CceecCceEEEecCCcEEEEccCCceEEEcCEEee---------------------------------------------
Q psy12107        263 GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA---------------------------------------------  297 (334)
Q Consensus       263 ~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~---------------------------------------------  297 (334)
                      +||+|||++++++||++++.||.+|+|+.+|++|+                                             
T Consensus       428 ~~~~TGDl~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~  507 (558)
T PRK12583        428 GWMHTGDLATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASE  507 (558)
T ss_pred             CCeeccceEEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCCCH
Confidence            99999999999999999999999999999999998                                             


Q ss_pred             ------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        298 ------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       298 ------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                                  +++.|.. ++++++||+|++||++|++|+++..+.
T Consensus       508 ~~i~~~~~~~L~~~~~P~~-i~~v~~lP~t~sGK~~r~~L~~~~~~~  553 (558)
T PRK12583        508 EELREFCKARIAHFKVPRY-FRFVDEFPMTVTGKVQKFRMREISIEE  553 (558)
T ss_pred             HHHHHHHHhhcccCcCCcE-EEEeccCCCCCCCCccHHHHHHHHHhh
Confidence                        3345555 999999999999999999999987543

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=100.00  E-value=5.6e-42  Score=315.48  Aligned_cols=254  Identities=24%  Similarity=0.355  Sum_probs=197.6

Q ss_pred             CCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcE
Q psy12107         56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMH  135 (334)
Q Consensus        56 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~  135 (334)
                      ..++++++++|||||||.||+|++||+++..+.......+       .... ++.++.+|++|.+|+.. ++.++..|++
T Consensus       117 ~~~~~~~~i~~TSGTTG~PKgV~~t~~~l~~~~~~~~~~~-------~~~~-~~~~~~~Pl~h~~g~~~-~~~~l~~G~t  187 (452)
T PRK07445        117 PNLETGWIMIPTGGSSGQIRFAIHTWETLTASVQGFQRYF-------QLQQ-VNSFCVLPLYHVSGLMQ-FMRSFLTGGK  187 (452)
T ss_pred             CCCCCcEEEEeCCCCCCCCcEEEechHHHHHHHHHHHHHh-------cCCC-CceEeccCchhhhhHHH-HHHHHHcCCe
Confidence            3568999999999999999999999999987766554432       1223 45788999999999865 6788999999


Q ss_pred             EEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeec
Q psy12107        136 MITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQG  215 (334)
Q Consensus       136 ~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~  215 (334)
                      +++.+............++++++++++|+++..+.+.   ....+++||.+++||+++++++.+++.+ +   ++++++.
T Consensus       188 ~v~~~~~~~~~~~~~~~~~~~t~~~~vP~~l~~l~~~---~~~~l~~l~~i~~gG~~l~~~~~~~~~~-~---~~~l~~~  260 (452)
T PRK07445        188 LVILPYKRLKSGQELPPNPSDFFLSLVPTQLQRLLQL---RPQWLAQFRTILLGGAPAWPSLLEQARQ-L---QLRLAPT  260 (452)
T ss_pred             EEEcChHhccchhhhhhhcCceEEEehHHHHHHHHhh---ChhhhhcceEEEECCccCCHHHHHHHHh-c---CCeEecC
Confidence            9987643233333444578999999999999999863   2345789999999999999999998875 3   3589999


Q ss_pred             cCCCCCCCcccccccCC------C--------Ccc--ccCcccc------ccccccCCccccccccCCCCceecCceEEE
Q psy12107        216 YGMTETSPCTLYTRFAI------P--------EAK--LGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYY  273 (334)
Q Consensus       216 YG~tE~g~~~~~~~~~~------~--------~~~--~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~  273 (334)
                      ||+||++..+.......      .        ..+  .+..|++      ++.||++++.      ..++||+|||++++
T Consensus       261 YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~~g~~Gel~v~g~~~~~gY~~~~~------~~~g~~~TGDl~~~  334 (452)
T PRK07445        261 YGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIPANQTGNITIQAQSLALGYYPQIL------DSQGIFETDDLGYL  334 (452)
T ss_pred             cchhhhcccccccCchhhccCCCcCCccCCCCeEEEcCCCcceEEEeCCccchhhcCCcc------CCCCEEECCCEEEE
Confidence            99999875433211110      0        000  1334444      6788987543      24789999999999


Q ss_pred             ecCCcEEEEccCCceEEEcCEEee--------------------------------------------------------
Q psy12107        274 DEDGYFYIVDRTKELIKVKGNQVA--------------------------------------------------------  297 (334)
Q Consensus       274 ~~dg~~~~~GR~~d~i~~~G~~i~--------------------------------------------------------  297 (334)
                      |+||++++.||.||+||.+|++|+                                                        
T Consensus       335 d~dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~~~L~  414 (452)
T PRK07445        335 DAQGYLHILGRNSQKIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDPSISLEELKTAIKDQLS  414 (452)
T ss_pred             cCCCCEEEEeecCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCCCCCHHHHHHHHHHhCC
Confidence            999999999999999999999999                                                        


Q ss_pred             eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        298 PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       298 ~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                      +++.|.. +.++++||+|++||++|++|++.+.+.
T Consensus       415 ~~~~P~~-i~~v~~lP~t~~GKi~r~~L~~~~~~~  448 (452)
T PRK07445        415 PFKQPKH-WIPVPQLPRNPQGKINRQQLQQIAVQR  448 (452)
T ss_pred             cccCCeE-EEEecCCCCCCCcccCHHHHHHHHHHh
Confidence            5566676 999999999999999999999987654

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.2e-41  Score=320.80  Aligned_cols=266  Identities=37%  Similarity=0.631  Sum_probs=217.0

Q ss_pred             CCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEE
Q psy12107         57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHM  136 (334)
Q Consensus        57 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~  136 (334)
                      .++++++++|||||||.||+|.++|+++..+..........     ....++++++..|++|.+++...++.++..|+++
T Consensus       204 ~~~~~a~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~  278 (563)
T PRK06710        204 PENDLALLQYTGGTTGFPKGVMLTHKNLVSNTLMGVQWLYN-----CKEGEEVVLGVLPFFHVYGMTAVMNLSIMQGYKM  278 (563)
T ss_pred             CCCCEEEEEcCCCCCCCCceEEEehHHHHHHHHHHHhhccC-----CCCCCceEEEeCchHHHHHHHHHHHHHHHcCCeE
Confidence            35799999999999999999999999987554332221100     0234568899999999999877677788999999


Q ss_pred             EEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeecc
Q psy12107        137 ITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGY  216 (334)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~Y  216 (334)
                      ++.+.+++..+++.|+++++|++.++|+++..+.+........++++|.+++||+++++++.+++++.++.   ++++.|
T Consensus       279 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~---~~~~~Y  355 (563)
T PRK06710        279 VLIPKFDMKMVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEKFETVTGG---KLVEGY  355 (563)
T ss_pred             EEcCCCCHHHHHHHHHHcCCeEEeccHHHHHHHHcCCccccCChhhhhheeeCCCcCCHHHHHHHHHhhCC---CEeccc
Confidence            99888999999999999999999999999999988665555667899999999999999999999998864   799999


Q ss_pred             CCCCCCCccccccc---------C---------------CCCccccCcccc------ccccccCCccccccccCCCCcee
Q psy12107        217 GMTETSPCTLYTRF---------A---------------IPEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLH  266 (334)
Q Consensus       217 G~tE~g~~~~~~~~---------~---------------~~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~  266 (334)
                      |+||++.+......         +               ......+..|++      ++.||+++++.+...+ .+|||+
T Consensus       356 G~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~  434 (563)
T PRK06710        356 GLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVL-QDGWLH  434 (563)
T ss_pred             ccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCccchhhhCChHHHhhhc-ccCccc
Confidence            99999865432110         0               001112333433      7889999999988877 589999


Q ss_pred             cCceEEEecCCcEEEEccCCceEEEcCEEee-------------------------------------------------
Q psy12107        267 TGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-------------------------------------------------  297 (334)
Q Consensus       267 TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-------------------------------------------------  297 (334)
                      |||+++++++|+++++||.+|+|+.+|.+|+                                                 
T Consensus       435 TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~  514 (563)
T PRK06710        435 TGDVGYMDEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELN  514 (563)
T ss_pred             ccceEEEcCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCCHHHHH
Confidence            9999999999999999999999999999998                                                 


Q ss_pred             --------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        298 --------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       298 --------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                              +++.|.. +.++++||+|++||++|++|++.....
T Consensus       515 ~~~~~~l~~~~~P~~-~~~v~~iP~t~~GKi~r~~L~~~~~~~  556 (563)
T PRK06710        515 QFARKYLAAYKVPKV-YEFRDELPKTTVGKILRRVLIEEEKRK  556 (563)
T ss_pred             HHHHHhcccccCCcE-EEEcccCCCCccchhhHHHHHHHHhhc
Confidence                    4445655 999999999999999999999987543

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=6.4e-42  Score=327.05  Aligned_cols=270  Identities=23%  Similarity=0.378  Sum_probs=203.4

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++|+++|+|||||||.||||+++|+++.++.......+.      ...++++.++.+|++|.+++...+...+..|.
T Consensus       189 ~~~~~d~a~i~yTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~------~~~~~~~~l~~~Pl~h~~g~~~~~~~~~~gg~  262 (612)
T PRK12476        189 ELDTDDVSHLQYTSGSTRPPVGVEITHRAVGTNLVQMILSID------LLDRNTHGVSWLPLYHDMGLSMIGFPAVYGGH  262 (612)
T ss_pred             CCCCCceEEEEeCCCCCCCCceEEeeHHHHHHHHHHHHHHhc------cCCCCceEEEeCCcccccchHHHHHHHhcCCe
Confidence            356789999999999999999999999999876554433221      03567899999999999998775445455554


Q ss_pred             EEEEcC-CC--CHHHHHHHHH--HcCCeEEeechHHHHHHhcCCC----CCccccccceeeeecCCCCCHHHHHHHHHHh
Q psy12107        135 HMITIP-KF--TPETYIECVV--KYKPTILFVVPSLLLFLASHPA----VTPEHLASIREVTCGAAPATKSLIDKFKQKV  205 (334)
Q Consensus       135 ~~~~~~-~~--~~~~~~~~i~--~~~~t~l~~~p~~l~~l~~~~~----~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~  205 (334)
                      ++++.+ .+  ++..+++.++  ++++++++++|+++..+.....    ....+++++| +++||+++++++.+++.+.|
T Consensus       263 ~~~~~~~~~~~~p~~~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~  341 (612)
T PRK12476        263 STLMSPTAFVRRPQRWIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAEGDDIDLSNVV-LIIGSEPVSIDAVTTFNKAF  341 (612)
T ss_pred             EEEECHHHHHHHHHHHHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhhhcCcchhHhe-EEecccCCCHHHHHHHHHHH
Confidence            444443 23  8899999995  5899999999998887765321    1234678999 99999999999999999988


Q ss_pred             ---ccCCCceeeccCCCCCCCccccccc-----------------------------------C---------------C
Q psy12107        206 ---QREDITIRQGYGMTETSPCTLYTRF-----------------------------------A---------------I  232 (334)
Q Consensus       206 ---~~~~~~i~~~YG~tE~g~~~~~~~~-----------------------------------~---------------~  232 (334)
                         |.+...+++.||+||++..++....                                   +               .
T Consensus       342 ~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g  421 (612)
T PRK12476        342 APYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTG  421 (612)
T ss_pred             HhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCC
Confidence               3323459999999998754322100                                   0               0


Q ss_pred             CCccccCcccc------ccccccCCccccccccC------------------CCCceecCceEEEecCCcEEEEccCCce
Q psy12107        233 PEAKLGSTGQL------VMLGYLKNEEATKETVD------------------SEGWLHTGDVAYYDEDGYFYIVDRTKEL  288 (334)
Q Consensus       233 ~~~~~~~~G~~------~~~gy~~~~~~~~~~~~------------------~~~~~~TGD~~~~~~dg~~~~~GR~~d~  288 (334)
                      .+...+..|++      ++.||+++++.|.+.|.                  .++||+|||+|++ +||+++++||+||+
T Consensus       422 ~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~-~dG~l~i~GR~~d~  500 (612)
T PRK12476        422 AELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY-LDGELYITGRIADL  500 (612)
T ss_pred             cCCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeecccccee-ECCEEEEEeccCcE
Confidence            01112333433      78999999999988874                  1359999999998 59999999999999


Q ss_pred             EEEcCEEee-------------------------------------------------------------eeeeccCcEE
Q psy12107        289 IKVKGNQVA-------------------------------------------------------------PYKKLAGGVK  307 (334)
Q Consensus       289 i~~~G~~i~-------------------------------------------------------------~~~~~~~~i~  307 (334)
                      ||++|++|+                                                             .++.++..+.
T Consensus       501 I~~~G~~I~p~eIE~~l~~~~p~V~~~~v~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~v~  580 (612)
T PRK12476        501 IVIDGRNHYPQDIEATVAEASPMVRRGYVTAFTVPAEDNERLVIVAERAAGTSRADPAPAIDAIRAAVSRRHGLAVADVR  580 (612)
T ss_pred             EEECCcccCHHHHHHHHHHhcccccCCcEEEEEecCCCcceEEEEEEecCCcccccHHHHHHHHHHHHHHhhCCcceEEE
Confidence            999999999                                                             1222222377


Q ss_pred             Eee--cCCCCCCchhhHHHHhhhhcCC
Q psy12107        308 FLE--TIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       308 ~v~--~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                      |++  +||+|++|||+|++|++.+.+.
T Consensus       581 ~v~~~~lP~t~~GKi~r~~L~~~~~~~  607 (612)
T PRK12476        581 LVPAGAIPRTTSGKLARRACRAQYLDG  607 (612)
T ss_pred             EECCCCcCcCCchHHHHHHHHHHHHcC
Confidence            887  6999999999999999997654

>PRK07867 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.8e-41  Score=315.74  Aligned_cols=264  Identities=25%  Similarity=0.383  Sum_probs=214.3

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++++|||||||.||+|+++|+++..+.......+       .....|++++.+|++|.+++...++.++..|+
T Consensus       148 ~~~~~~~~~i~~TSGTTG~PKgv~~s~~~l~~~~~~~~~~~-------~~~~~d~~l~~~pl~~~~~~~~~~~~~l~~G~  220 (529)
T PRK07867        148 VADPDDLFMLIFTSGTSGDPKAVRCTHRKVASAGVMLAQRF-------GLGPDDVCYVSMPLFHSNAVMAGWAVALAAGA  220 (529)
T ss_pred             cCCccceEEEEECCCCCCCCcEEEecHHHHHHHHHHHHHhh-------CCCcccEEEEecchhHHHHHHHHHHHHHhcCc
Confidence            45679999999999999999999999999987766554443       25678999999999999998877778899999


Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceee
Q psy12107        135 HMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ  214 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~  214 (334)
                      ++++.+.++++.+++.++++++|++.++|+.+..++...+......+++| +++||+.+++.. +++.+.+|.   ++++
T Consensus       221 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~~~~~~lr-~~~gg~~~~~~~-~~~~~~~g~---~l~~  295 (529)
T PRK07867        221 SIALRRKFSASGFLPDVRRYGATYANYVGKPLSYVLATPERPDDADNPLR-IVYGNEGAPGDI-ARFARRFGC---VVVD  295 (529)
T ss_pred             eEEecCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCcccccccceE-EEecCCCChHHH-HHHHHHhCC---cEEE
Confidence            99998889999999999999999999999999998876543333345677 456888887765 667777764   7999


Q ss_pred             ccCCCCCCCcccccccC-------------------CCCccccC------------cccc-------ccccccCCccccc
Q psy12107        215 GYGMTETSPCTLYTRFA-------------------IPEAKLGS------------TGQL-------VMLGYLKNEEATK  256 (334)
Q Consensus       215 ~YG~tE~g~~~~~~~~~-------------------~~~~~~~~------------~G~~-------~~~gy~~~~~~~~  256 (334)
                      .||+||++.+.......                   ..+...+.            .|++       ++.||+++++.+.
T Consensus       296 ~YG~TE~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~  375 (529)
T PRK07867        296 GFGSTEGGVAITRTPDTPPGALGPLPPGVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADA  375 (529)
T ss_pred             eecccccccccccCCCCCCCCcCCCCCCEEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhh
Confidence            99999988644322100                   00011122            4444       4689999999998


Q ss_pred             cccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee---------------------------------------
Q psy12107        257 ETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA---------------------------------------  297 (334)
Q Consensus       257 ~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~---------------------------------------  297 (334)
                      ..+ .+|||+|||+++++++|++++.||.||+|+++|++|+                                       
T Consensus       376 ~~~-~~g~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~  454 (529)
T PRK07867        376 ERM-RGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAP  454 (529)
T ss_pred             hhh-cCCeEeeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECC
Confidence            888 5899999999999999999999999999999999998                                       


Q ss_pred             --------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        298 --------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       298 --------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                                          +++.|.. ++++++||+|++||++|++|+++....
T Consensus       455 ~~~~~~~~l~~~~~~~~~l~~~~~P~~-i~~~~~iP~t~~GKv~r~~L~~~~~~~  508 (529)
T PRK07867        455 GAKFDPDAFAEFLAAQPDLGPKQWPSY-VRVCAELPRTATFKVLKRQLSAEGVDC  508 (529)
T ss_pred             CCCCCHHHHHHHHHhhccCCcccCCeE-EEEeeccCCCCCcceeHHHHHHhcCCC
Confidence                                3456666 999999999999999999999987553

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.3e-41  Score=326.07  Aligned_cols=234  Identities=26%  Similarity=0.452  Sum_probs=183.0

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++|+|||||||.||||+++|+++..+.......+       ....++++++.+|++|.+++.. .+.++..|+
T Consensus       176 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-------~~~~~d~~l~~~Pl~h~~gl~~-~~~~~~~G~  247 (631)
T PRK07769        176 EANEDTIAYLQYTSGSTRIPAGVQITHLNLPTNVLQVIDAL-------EGQEGDRGVSWLPFFHDMGLIT-VLLPALLGH  247 (631)
T ss_pred             CCCCCCeEEEEeCCCCCCCCcEEEEcHHHHHHHHHHHHHHc-------CCCCcceEEEeCCCcCchhhHH-HHHHHhhCC
Confidence            35678999999999999999999999999987765544333       2567889999999999999887 455666788


Q ss_pred             EEEEcCC--C--CHHHHHHHHHHcCC---eEEeechHHHHHHhcC---CC--CCccccccceeeeecCCCCCHHHHHHHH
Q psy12107        135 HMITIPK--F--TPETYIECVVKYKP---TILFVVPSLLLFLASH---PA--VTPEHLASIREVTCGAAPATKSLIDKFK  202 (334)
Q Consensus       135 ~~~~~~~--~--~~~~~~~~i~~~~~---t~l~~~p~~l~~l~~~---~~--~~~~~~~~lr~v~~~G~~l~~~~~~~~~  202 (334)
                      ++++.++  +  ++..+++.++++++   +++..+|+++..+...   ..  ....++++||.+++||+++++++.+++.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~  327 (631)
T PRK07769        248 YITFMSPAAFVRRPGRWIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGEPPLDLSNVKGLLNGSEPVSPASMRKFN  327 (631)
T ss_pred             eEEEEChHHHHhCHHHHHHHHHhhccccCceEeeCCchHHHHHHhhccchhcccCcchhheeeEEeccCCCCHHHHHHHH
Confidence            8877643  4  88999999999886   7899999887766542   11  1245788999999999999999999999


Q ss_pred             HHhc---cCCCceeeccCCCCCCCcccccccC------------------------------------------------
Q psy12107        203 QKVQ---REDITIRQGYGMTETSPCTLYTRFA------------------------------------------------  231 (334)
Q Consensus       203 ~~~~---~~~~~i~~~YG~tE~g~~~~~~~~~------------------------------------------------  231 (334)
                      +.|+   .+...+++.||+||++.+++.....                                                
T Consensus       328 ~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~  407 (631)
T PRK07769        328 EAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDP  407 (631)
T ss_pred             HHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcC
Confidence            9984   2223599999999987544321100                                                


Q ss_pred             --CCCccccCcccc------ccccccCCccccccccC-----------------CCCceecCceEEEecCCcEEEEccCC
Q psy12107        232 --IPEAKLGSTGQL------VMLGYLKNEEATKETVD-----------------SEGWLHTGDVAYYDEDGYFYIVDRTK  286 (334)
Q Consensus       232 --~~~~~~~~~G~~------~~~gy~~~~~~~~~~~~-----------------~~~~~~TGD~~~~~~dg~~~~~GR~~  286 (334)
                        ..+...+..|++      ++.|||++++.|.+.|.                 .++||+|||+|++ +||+++++||.|
T Consensus       408 ~~g~~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~-~dG~l~i~GR~~  486 (631)
T PRK07769        408 ETASELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVY-FDGELYITGRVK  486 (631)
T ss_pred             CCCcCCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccE-ECCEEEEEcccc
Confidence              001122334444      78899999999988874                 2489999999999 499999999999


Q ss_pred             ceEEEcCEEee
Q psy12107        287 ELIKVKGNQVA  297 (334)
Q Consensus       287 d~i~~~G~~i~  297 (334)
                      |+||++|++|+
T Consensus       487 d~Ik~~G~~V~  497 (631)
T PRK07769        487 DLVIIDGRNHY  497 (631)
T ss_pred             cEEEECCeeeC
Confidence            99999999998

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=5.8e-42  Score=376.37  Aligned_cols=265  Identities=23%  Similarity=0.334  Sum_probs=224.4

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ....+++++||+|||||||.||||+++|+++.+.+......+       ...++|+++...|+.|..+... ++.++..|
T Consensus      3232 ~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-------~~~~~d~~l~~~~~~fd~~~~~-~~~~L~~G 3303 (3956)
T PRK12467       3232 TRVMGENLAYVIYTSGSTGKPKGVGVRHGALANHLCWIAEAY-------ELDANDRVLLFMSFSFDGAQER-FLWTLICG 3303 (3956)
T ss_pred             ccCCCCceEEEEEccCCCCCcceeeehhHHHHHHHHHHHHhc-------CCCcCCEEEEecCccHhHHHHH-HHHHHhCC
Confidence            346789999999999999999999999999998887666554       3678999999999999888765 78999999


Q ss_pred             cEEEEcCC--CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107        134 MHMITIPK--FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT  211 (334)
Q Consensus       134 ~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~  211 (334)
                      +++++.+.  ++++.+++.|+++++|++.++|+++..|.+..  ...++++||.+++|||++++++.++|.+.++  ++.
T Consensus      3304 ~~l~i~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~--~~~~~~~lr~~~~gGe~~~~~~~~~~~~~~~--~~~ 3379 (3956)
T PRK12467       3304 GCLVVRDNDLWDPEELWQAIHAHRISIACFPPAYLQQFAEDA--GGADCASLDIYVFGGEAVPPAAFEQVKRKLK--PRG 3379 (3956)
T ss_pred             CEEEECCcccCCHHHHHHHHHHcCCEEEEcCHHHHHHHHhcc--cccCCCCceEEEEecCCCCHHHHHHHHHhCC--CCE
Confidence            99999875  78999999999999999999999999997653  2456788999999999999999999998886  568


Q ss_pred             eeeccCCCCCCCcccccccCC---------------------------CCccccCcccc------ccccccCCccccccc
Q psy12107        212 IRQGYGMTETSPCTLYTRFAI---------------------------PEAKLGSTGQL------VMLGYLKNEEATKET  258 (334)
Q Consensus       212 i~~~YG~tE~g~~~~~~~~~~---------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~  258 (334)
                      ++|.||+||++..++......                           .+...|..|++      +++||+++|+.|+++
T Consensus      3380 l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~ 3459 (3956)
T PRK12467       3380 LTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAER 3459 (3956)
T ss_pred             EEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEECCCCCCCCCCCCceEEEcchhhhhhccCCcccchhh
Confidence            999999999986443211100                           01223444444      789999999999999


Q ss_pred             cCCCC-------ceecCceEEEecCCcEEEEccCCceEEEcCEEee----------------------------------
Q psy12107        259 VDSEG-------WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA----------------------------------  297 (334)
Q Consensus       259 ~~~~~-------~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------------------------------  297 (334)
                      |..++       ||+|||+|++++||+++++||+||+||++|++|+                                  
T Consensus      3460 F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~~~~~~lva~v 3539 (3956)
T PRK12467       3460 FVADPFSGSGGRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDGAGGKQLVAYV 3539 (3956)
T ss_pred             ccCCCCCCCCceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEecCCCCcEEEEEE
Confidence            97654       5999999999999999999999999999999999                                  


Q ss_pred             ----------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 ----------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 ----------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                            .|++|.. |.++++||+|++|||||++|++...+
T Consensus      3540 ~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~-~~~l~~lP~t~~GKidR~~L~~~~~~ 3594 (3956)
T PRK12467       3540 VPADPQGDWRETLRDHLAASLPDYMVPAQ-LLVLAAMPLGPNGKVDRKALPDPDAK 3594 (3956)
T ss_pred             eCCCCCcccHHHHHHHHhccCChhhCCCe-eeeeccCCCCCCCccchhhcCCCCcc
Confidence                                  5666776 99999999999999999999986543

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.9e-41  Score=318.01  Aligned_cols=287  Identities=29%  Similarity=0.462  Sum_probs=221.8

Q ss_pred             cchhhhhc-CCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecch
Q psy12107         38 FGFKQLVT-SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPF  116 (334)
Q Consensus        38 ~~~~~ll~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~  116 (334)
                      ..+++++. ............++++++|+|||||||.||+|+++|.++..+......................+++.+|+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~a~il~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl  261 (557)
T PRK07059        182 VRFNDALAEGARQTFKPVKLGPDDVAFLQYTGGTTGVSKGATLLHRNIVANVLQMEAWLQPAFEKKPRPDQLNFVCALPL  261 (557)
T ss_pred             ccHHHHhhccCCCCCCCCCCCcCceEEEEeCCCCCCCCcEEEeecHHHHHHHHHHhhhhcccccccCCCCCcEEEEeCCc
Confidence            45555552 22222222456788999999999999999999999999887654332221100000001134577888999


Q ss_pred             hhhhHHHHHHHHHHHhCcEEEEcC-CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCH
Q psy12107        117 FHIYGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATK  195 (334)
Q Consensus       117 ~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~  195 (334)
                      +|.+++....+.++..|++.++.+ ..++..+++.++++++|.+.++|+++..+.........+++++|.++.||+++++
T Consensus       262 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~gg~~~~~  341 (557)
T PRK07059        262 YHIFALTVCGLLGMRTGGRNILIPNPRDIPGFIKELKKYQVHIFPAVNTLYNALLNNPDFDKLDFSKLIVANGGGMAVQR  341 (557)
T ss_pred             HHHHHHHHHHHHHHhhcceEEEecCCcCHHHHHHHHHHhCCeeeecCHHHHHHHHcCcCcCcCCchhheEEEeccccCCH
Confidence            999987766677777888766655 4588999999999999999999999999988766556678899999999999999


Q ss_pred             HHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC-----------------------CCccccCcccc------ccc
Q psy12107        196 SLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI-----------------------PEAKLGSTGQL------VML  246 (334)
Q Consensus       196 ~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-----------------------~~~~~~~~G~~------~~~  246 (334)
                      .+.++|.+.++.   ++++.||+||++.+++.+....                       .....+..|++      ++.
T Consensus       342 ~~~~~~~~~~~~---~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~  418 (557)
T PRK07059        342 PVAERWLEMTGC---PITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEPGEICIRGPQVMA  418 (557)
T ss_pred             HHHHHHHHHhCC---CeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEECCCCCCCCCCCceEEEEeCCccch
Confidence            999999998864   7999999999987654322110                       00112334444      678


Q ss_pred             cccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee-----------------------------
Q psy12107        247 GYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-----------------------------  297 (334)
Q Consensus       247 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-----------------------------  297 (334)
                      ||+++++.+...+..+|||+|||++++++||.++++||.+|+|+++|++|+                             
T Consensus       419 gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge  498 (557)
T PRK07059        419 GYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGE  498 (557)
T ss_pred             hhhcCHHHHhhhcccCCceecCcEEEEcCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCe
Confidence            999999999888888999999999999999999999999999999999998                             


Q ss_pred             ---------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhh
Q psy12107        298 ---------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVF  328 (334)
Q Consensus       298 ---------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~  328 (334)
                                                 +++.|.. |.+++++|+|++||++|+.|+++
T Consensus       499 ~~~~~v~~~~~~~~~~~l~~~~~~~l~~~~~P~~-i~~v~~~P~t~~GK~~r~~L~~~  555 (557)
T PRK07059        499 AVKLFVVKKDPALTEEDVKAFCKERLTNYKRPKF-VEFRTELPKTNVGKILRRELRDG  555 (557)
T ss_pred             eEEEEEEeCCCCCCHHHHHHHHHHhcccccCCcE-EEEeccCCCCcccceeHHHHHhh
Confidence                                       4445555 99999999999999999999865

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=100.00  E-value=3.7e-41  Score=321.84  Aligned_cols=253  Identities=24%  Similarity=0.379  Sum_probs=193.3

Q ss_pred             ccchhhhhcCCCC---CCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEe
Q psy12107         37 IFGFKQLVTSQPP---DFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSV  113 (334)
Q Consensus        37 ~~~~~~ll~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  113 (334)
                      ..+|++++.....   ........++|+++|+|||||||.||||++||+++..+.......+..     .....+++++.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~~~~l~~  258 (614)
T PRK08180        184 ATPFAALLATPPTAAVDAAHAAVGPDTIAKFLFTSGSTGLPKAVINTHRMLCANQQMLAQTFPF-----LAEEPPVLVDW  258 (614)
T ss_pred             cccHHHHhccccccchhhhccCCCcCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHhhccc-----cCCCCcEEEEe
Confidence            3567776632111   111124567999999999999999999999999998877655443311     01256799999


Q ss_pred             cchhhhhHHHHHHHHHHHhCcEEEEcCC-CCH---HHHHHHHHHcCCeEEeechHHHHHHhcCCC----CCcccccccee
Q psy12107        114 LPFFHIYGFNGILNVVMMYGMHMITIPK-FTP---ETYIECVVKYKPTILFVVPSLLLFLASHPA----VTPEHLASIRE  185 (334)
Q Consensus       114 ~p~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~---~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~----~~~~~~~~lr~  185 (334)
                      +|++|++++...++.++..|+++++.+. +++   ..+++.++++++|+++++|+++..|++...    .....+++||.
T Consensus       259 lPl~h~~g~~~~~~~~l~~G~~v~~~~~~~~~~~~~~~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~lr~  338 (614)
T PRK08180        259 LPWNHTFGGNHNLGIVLYNGGTLYIDDGKPTPGGFDETLRNLREISPTVYFNVPKGWEMLVPALERDAALRRRFFSRLKL  338 (614)
T ss_pred             cchHHHhhHHHHHHHHHhcCCEEEEeCCCccchhHHHHHHHHHHhCCcEEechHHHHHHHHHHHHhchhhhhhhccceeE
Confidence            9999999987777888999999988763 443   567889999999999999999998876432    12345789999


Q ss_pred             eeecCCCCCHHHHHHHHHH----hccCCCceeeccCCCCCCCcccccccCCCCccccCc-----------------cc--
Q psy12107        186 VTCGAAPATKSLIDKFKQK----VQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGST-----------------GQ--  242 (334)
Q Consensus       186 v~~~G~~l~~~~~~~~~~~----~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~-----------------G~--  242 (334)
                      +++||+++++++.+++.+.    ++. ++++++.||+||++.+++.......  ..+++                 |+  
T Consensus       339 v~~gGa~l~~~~~~~~~~~~~~~~g~-~~~l~~~YG~TE~~~~~~~~~~~~~--~~~svG~p~pg~~v~i~d~~~~GEi~  415 (614)
T PRK08180        339 LFYAGAALSQDVWDRLDRVAEATCGE-RIRMMTGLGMTETAPSATFTTGPLS--RAGNIGLPAPGCEVKLVPVGGKLEVR  415 (614)
T ss_pred             EEEccCCCCHHHHHHHHHHHHhhcCC-CceeeeeecccccCCceEecccccC--CCCcccCccCCcEEEEecCCCCcEEE
Confidence            9999999999999999875    342 4679999999999866543221111  12222                 22  


Q ss_pred             ----cccccccCCccccccccCCCCceecCceEEE----ecCCcEEEEccCCceEEE-cCEEee
Q psy12107        243 ----LVMLGYLKNEEATKETVDSEGWLHTGDVAYY----DEDGYFYIVDRTKELIKV-KGNQVA  297 (334)
Q Consensus       243 ----~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~----~~dg~~~~~GR~~d~i~~-~G~~i~  297 (334)
                          .++.||+++|+.+.+.|+.+|||+|||+|++    |+||+++++||.+|+|++ +|++|+
T Consensus       416 vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~  479 (614)
T PRK08180        416 VKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVS  479 (614)
T ss_pred             EecCccchhhcCChhHhHhhcccCCceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEec
Confidence                2688999999999999988999999999999    468999999999999986 698776

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=100.00  E-value=8.5e-41  Score=316.64  Aligned_cols=269  Identities=33%  Similarity=0.530  Sum_probs=215.7

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++++|||||||.||+|.++|.++..+.......+.....  .....+++++..|++|.+++....+.++..|+
T Consensus       204 ~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  281 (560)
T PRK08751        204 QIEPDDIAFLQYTGGTTGVAKGAMLTHRNLVANMQQAHQWLAGTGK--LEEGCEVVITALPLYHIFALTANGLVFMKIGG  281 (560)
T ss_pred             CCCcccEEEEEcCCCCCCCCCEEEEccHHHHHHHHHHHHhhccccc--cCCCCceEEEecChHHHHHHHHhhhhHhhccc
Confidence            4567899999999999999999999999998776554333211000  01234677888999999998665566666666


Q ss_pred             EEEEc-CCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCcee
Q psy12107        135 HMITI-PKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR  213 (334)
Q Consensus       135 ~~~~~-~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~  213 (334)
                      +.++. ..+++..+++.|+++++|++.++|+++..+.+.......++++||.+++||+++++++.+.|++.++.   +++
T Consensus       282 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~---~~~  358 (560)
T PRK08751        282 CNHLISNPRDMPGFVKELKKTRFTAFTGVNTLFNGLLNTPGFDQIDFSSLKMTLGGGMAVQRSVAERWKQVTGL---TLV  358 (560)
T ss_pred             eEEEecCcCCHHHHHHHHHhcceeEecChHHHHHHHHcCcCcCCcchhhheeeeeCCCCCCHHHHHHHHHHhCC---eEE
Confidence            65554 45789999999999999999999999999988766556678899999999999999999999998864   799


Q ss_pred             eccCCCCCCCcccccccCC-----------------------CCccccCcccc------ccccccCCccccccccCCCCc
Q psy12107        214 QGYGMTETSPCTLYTRFAI-----------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGW  264 (334)
Q Consensus       214 ~~YG~tE~g~~~~~~~~~~-----------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~  264 (334)
                      +.||+||++..++.+....                       .....+..|++      +++||+++++.+...+..+||
T Consensus       359 ~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~  438 (560)
T PRK08751        359 EAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGW  438 (560)
T ss_pred             EeeccccCCCceecccccccccCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecCccchhhcCChhhhhhccccCCC
Confidence            9999999986554332110                       00112233433      678999999999988878899


Q ss_pred             eecCceEEEecCCcEEEEccCCceEEEcCEEee-----------------------------------------------
Q psy12107        265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-----------------------------------------------  297 (334)
Q Consensus       265 ~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-----------------------------------------------  297 (334)
                      |+|||+++++++|++++.||.+|+|+++|++|+                                               
T Consensus       439 ~~TGD~~~~~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~~~~~~~~~l  518 (560)
T PRK08751        439 LHTGDIARMDEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKKDPALTAEDV  518 (560)
T ss_pred             ccccceEEEcCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcCCCCCCHHHH
Confidence            999999999999999999999999999999999                                               


Q ss_pred             ---------eeeeccCcEEEeecCCCCCCchhhHHHHhhhh
Q psy12107        298 ---------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFG  329 (334)
Q Consensus       298 ---------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~  329 (334)
                               +++.|.. |+++++||+|++||++|++|++..
T Consensus       519 ~~~~~~~l~~~~~P~~-v~~v~~lP~t~~gKv~r~~L~~~~  558 (560)
T PRK08751        519 KAHARANLTGYKQPRI-IEFRKELPKTNVGKILRRELRDAA  558 (560)
T ss_pred             HHHHHHhhhhccCCeE-EEEhhhCCCCccccccHHHHHHhh
Confidence                     4445566 999999999999999999999873

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=5.7e-41  Score=323.79  Aligned_cols=264  Identities=17%  Similarity=0.147  Sum_probs=203.7

Q ss_pred             CCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcE
Q psy12107         56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMH  135 (334)
Q Consensus        56 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~  135 (334)
                      .+++++++|+|||||||.||||+++|.+++..........       +..++|++++..+++|+.+... ++.++..|++
T Consensus       353 ~~~d~~a~IlyTSGTTG~PKgVv~sh~~~l~~~~~~~~~~-------~l~~~d~~~~~~~l~w~~g~~~-v~~~L~~Gat  424 (728)
T PLN03052        353 QPVEAFTNILFSSGTTGEPKAIPWTQLTPLRAAADAWAHL-------DIRKGDIVCWPTNLGWMMGPWL-VYASLLNGAT  424 (728)
T ss_pred             cCCCCcEEEEecCCCCCCCceEEECchHHHHHHHHHHHhc-------CCCCCcEEEECCCcHHHhHHHH-HHHHHHhCCE
Confidence            3568999999999999999999999998766544332222       2678899999999999998754 6789999999


Q ss_pred             EEEcCC-CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceee
Q psy12107        136 MITIPK-FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ  214 (334)
Q Consensus       136 ~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~  214 (334)
                      +++.+. +++..+++.++++++|++.++|++++.|.+.......++++||.++++|++++++...++.+.++  ..++++
T Consensus       425 ~vl~~g~p~~~~~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~~dlssLr~i~s~Ge~l~~~~~~~~~~~~~--~~~i~~  502 (728)
T PLN03052        425 LALYNGSPLGRGFAKFVQDAKVTMLGTVPSIVKTWKNTNCMAGLDWSSIRCFGSTGEASSVDDYLWLMSRAG--YKPIIE  502 (728)
T ss_pred             EEEeCCCCCCChHHHHHHHHCCCEEEECHHHHHHHHhcCCcccCChhheeEEEecCCCCCHHHHHHHHHhcC--CCCeEe
Confidence            999874 56678999999999999999999999998765445678899999999999999999888888776  246899


Q ss_pred             ccCCCCCCCcccccccCC-----------------------CCcccc--Ccccccc--------ccccCCccccccccC-
Q psy12107        215 GYGMTETSPCTLYTRFAI-----------------------PEAKLG--STGQLVM--------LGYLKNEEATKETVD-  260 (334)
Q Consensus       215 ~YG~tE~g~~~~~~~~~~-----------------------~~~~~~--~~G~~~~--------~gy~~~~~~~~~~~~-  260 (334)
                      .||+||++..+.......                       .+...+  ..|+++.        .+|+++. .+...|. 
T Consensus       503 ~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~-~~~~yf~~  581 (728)
T PLN03052        503 YCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELALFPLMFGASSTLLNAD-HYKVYFKG  581 (728)
T ss_pred             eccChhhCcccccCCCCCCCCCCccccCCCCceEEEECCCCCCCCCCCCceEEEEEeCCCCCCCccccCch-hhhhhhhc
Confidence            999999875432111000                       011112  1355432        2344432 2222231 


Q ss_pred             -----CCCceecCceEEEecCCcEEEEccCCceEEEcCEEee--------------------------------------
Q psy12107        261 -----SEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA--------------------------------------  297 (334)
Q Consensus       261 -----~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~--------------------------------------  297 (334)
                           ...||+|||++++|+||+++++||.||+||++|++|+                                      
T Consensus       582 ~p~~~g~~~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVv  661 (728)
T PLN03052        582 MPVFNGKILRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAV  661 (728)
T ss_pred             CCCCCCCEEEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEE
Confidence                 2238999999999999999999999999999999999                                      


Q ss_pred             ---------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 ---------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 ---------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                                 ++++|.. |+++++||+|++|||+|+.||+.+.+
T Consensus       662 l~~~~g~~~~~~~L~~~i~~~i~~~l~~~~~p~~-i~~v~~lP~T~sGKi~Rr~Lr~~~~~  721 (728)
T PLN03052        662 LKDPPGSNPDLNELKKIFNSAIQKKLNPLFKVSA-VVIVPSFPRTASNKVMRRVLRQQLAQ  721 (728)
T ss_pred             EecCCCCCCCHHHHHHHHHHHHHhhcCCccCCCE-EEEcCCCCCCCchHHHHHHHHHHHHh
Confidence                                       1122333 88999999999999999999998754

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=100.00  E-value=6.8e-41  Score=321.27  Aligned_cols=283  Identities=25%  Similarity=0.347  Sum_probs=202.0

Q ss_pred             hhHHHHHHhhhCCCCceEEEEcCCCCC--------CCCccchhhhhc-CCCCCCCCCCCCCCCEEEEecCCCCCCCchhh
Q psy12107          7 LLEVGTKIGATLPNFRGTIVVGGEHDK--------SKNIFGFKQLVT-SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGV   77 (334)
Q Consensus         7 ~~~~~~~~~~~~~~~~~ii~~~~~~~~--------~~~~~~~~~ll~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v   77 (334)
                      +.+.+...+..++.++.||++++....        .....+|++++. ............++|+++|+|||||||.||||
T Consensus       159 ~~~~~~~~~~~~~~l~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV  238 (660)
T PLN02430        159 IKELLEPDCKSAKRLKAIVSFTSVTEEESDKASQIGVKTYSWIDFLHMGKENPSETNPPKPLDICTIMYTSGTSGDPKGV  238 (660)
T ss_pred             HHHHHhhhcccCCCceEEEEECCCChHHhhhhhcCCcEEEEHHHHHHhhccCCCCCCCcCcCceEEEEECCCCCCCCCEE
Confidence            334444444456778888888642210        012357888763 11111112334689999999999999999999


Q ss_pred             hhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCe
Q psy12107         78 KLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPT  157 (334)
Q Consensus        78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t  157 (334)
                      ++||+++..+...........  ......+|++++.+|++|.++... ...++..|+++++... ++..+++.|++++||
T Consensus       239 ~lth~~~~~~~~~~~~~~~~~--~~~~~~~d~~ls~lPl~H~~~~~~-~~~~l~~G~~i~~~~~-~~~~l~~~l~~~~pt  314 (660)
T PLN02430        239 VLTHEAVATFVRGVDLFMEQF--EDKMTHDDVYLSFLPLAHILDRMI-EEYFFRKGASVGYYHG-DLNALRDDLMELKPT  314 (660)
T ss_pred             EeecHHHHHHHHHHHhhcccc--ccCCCCCCEEEEeCcHHHHHHHHH-HHHHHHcCCEEEEeCC-ChhhHHHHHHHhCCc
Confidence            999999988765543211000  002467899999999999999876 4556788999877653 788999999999999


Q ss_pred             EEeechHHHHHHhcCCC---------------------------------CCc-cc----------c-ccceeeeecCCC
Q psy12107        158 ILFVVPSLLLFLASHPA---------------------------------VTP-EH----------L-ASIREVTCGAAP  192 (334)
Q Consensus       158 ~l~~~p~~l~~l~~~~~---------------------------------~~~-~~----------~-~~lr~v~~~G~~  192 (334)
                      ++.++|.++..+.+...                                 ... .+          + .+||.+++||++
T Consensus       315 ~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~~lr~~~~gga~  394 (660)
T PLN02430        315 LLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGGRLRLLISGGAP  394 (660)
T ss_pred             EEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCCeEEEEEECCCC
Confidence            99999999987754100                                 000 00          1 579999999999


Q ss_pred             CCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC---------C----Ccc-------------ccCcccc---
Q psy12107        193 ATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI---------P----EAK-------------LGSTGQL---  243 (334)
Q Consensus       193 l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~---------~----~~~-------------~~~~G~~---  243 (334)
                      +++++.+.++ .++  ...+++.||+||+++..+......         +    +.+             .+..|++   
T Consensus       395 l~~~~~~~~~-~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~~~GEi~vr  471 (660)
T PLN02430        395 LSTEIEEFLR-VTS--CAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEPPRGEICVR  471 (660)
T ss_pred             CCHHHHHHHH-Hhc--CCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCCCcceEEec
Confidence            9999876655 454  347999999999876443321110         0    000             0113444   


Q ss_pred             ---ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEE-cCEEee
Q psy12107        244 ---VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKV-KGNQVA  297 (334)
Q Consensus       244 ---~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~i~  297 (334)
                         ++.|||++|+.|.+.| .+|||+|||+|++|+||++++.||.||+||+ +|++|+
T Consensus       472 g~~v~~GY~~~~e~t~~~~-~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~  528 (660)
T PLN02430        472 GKCLFSGYYKNPELTEEVM-KDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVA  528 (660)
T ss_pred             CCCccccccCChHHhhhhh-hccceeccceEEECCCCcEEEEEcccccEEcCCCcEEc
Confidence               7889999999999998 6999999999999999999999999999997 699999

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.4e-40  Score=298.07  Aligned_cols=257  Identities=24%  Similarity=0.357  Sum_probs=204.1

Q ss_pred             CCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcE
Q psy12107         56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMH  135 (334)
Q Consensus        56 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~  135 (334)
                      ..++|+++++|||||||.||+|+++|+++..+.......         ....++++...|++|.+++.. ++.++..|++
T Consensus        32 ~~~~d~a~il~TSGTTG~PKgv~~s~~~l~~~~~~~~~~---------~~~~~~~~~~~p~~~~~g~~~-~~~~l~~g~~  101 (358)
T PRK07824         32 PIDDDVALVVATSGTTGTPKGAMLTAAALTASADATHDR---------LGGPGQWLLALPAHHIAGLQV-LVRSVIAGSE  101 (358)
T ss_pred             CCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHhc---------cCCCCeEEEECChHHHHHHHH-HHHHHHcCCe
Confidence            346899999999999999999999999998877654433         224567889999999999876 5777888888


Q ss_pred             EEE---cCCCCHHHHHHHHHHcC--CeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107        136 MIT---IPKFTPETYIECVVKYK--PTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI  210 (334)
Q Consensus       136 ~~~---~~~~~~~~~~~~i~~~~--~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~  210 (334)
                      +++   ...+++..+++.+++++  .++...+|..+..++.... ....++++|.+++||+++++++.+++.+ +   ++
T Consensus       102 ~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~-~~~~~~~l~~i~~gG~~l~~~~~~~~~~-~---~~  176 (358)
T PRK07824        102 PVELDVSAGFDPTALPRAVAELGGGRRYTSLVPMQLAKALDDPA-ATAALAELDAVLVGGGPAPAPVLDAAAA-A---GI  176 (358)
T ss_pred             EEecCcCCCcCHHHHHHHHHHhCCCceEEEecHHHHHHHHhCcc-ccCCcccceEEEECCCCCCHHHHHHHHh-c---CC
Confidence            776   34578999999999998  5566778888887766543 2346789999999999999999999876 3   45


Q ss_pred             ceeeccCCCCCCCcccccccC--C-----CCccccCccccccccccCCccccccccCCCCceecCceEEEecCCcEEEEc
Q psy12107        211 TIRQGYGMTETSPCTLYTRFA--I-----PEAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVD  283 (334)
Q Consensus       211 ~i~~~YG~tE~g~~~~~~~~~--~-----~~~~~~~~G~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~G  283 (334)
                      ++++.||+||++..+......  .     ..+.....|..+++||+++++.+  .+..++||+|||++++ ++|.+++.|
T Consensus       177 ~v~~~YG~TE~~~~~~~~G~~~~g~~v~i~~Gei~v~g~~~~~gY~~~~~~~--~~~~~g~~~TGDl~~~-~~g~l~i~G  253 (358)
T PRK07824        177 NVVRTYGMSETSGGCVYDGVPLDGVRVRVEDGRIALGGPTLAKGYRNPVDPD--PFAEPGWFRTDDLGAL-DDGVLTVLG  253 (358)
T ss_pred             cEEecccCCccCCCcCcCceeCCCCEEEecCCEEEEecCccccccCCCcccc--cccCCCceecccEEEE-eCCEEEEEe
Confidence            899999999987543211100  0     01112223566899999988743  3556789999999999 899999999


Q ss_pred             cCCceEEEcCEEee---------------------------------------------------------eeeeccCcE
Q psy12107        284 RTKELIKVKGNQVA---------------------------------------------------------PYKKLAGGV  306 (334)
Q Consensus       284 R~~d~i~~~G~~i~---------------------------------------------------------~~~~~~~~i  306 (334)
                      |.||+||.+|++|+                                                         +++.|.. |
T Consensus       254 R~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~i~~~~~~~l~~~~~P~~-i  332 (358)
T PRK07824        254 RADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVARTLDRTAAPRE-L  332 (358)
T ss_pred             ccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCcCHHHHHHHHHhhCccccCCCE-E
Confidence            99999999999998                                                         4556666 9


Q ss_pred             EEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        307 KFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       307 ~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                      +++++||+|++||++|++|++.+.+
T Consensus       333 ~~v~~lP~t~~GKi~r~~L~~~~~~  357 (358)
T PRK07824        333 HVVDELPRRGIGKVDRRALVRRFAG  357 (358)
T ss_pred             EEecCCCCCCCccccHHHHHHHhhc
Confidence            9999999999999999999998865

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=100.00  E-value=2.2e-41  Score=350.04  Aligned_cols=229  Identities=21%  Similarity=0.302  Sum_probs=189.5

Q ss_pred             CCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcE
Q psy12107         56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMH  135 (334)
Q Consensus        56 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~  135 (334)
                      +.++|+++|+|||||||.||||+++|+++.+.+......+       ....+++++...|++|..++.. ++.++..|++
T Consensus       412 ~~~~d~a~ii~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~-------~~~~~d~~~~~~~~~~d~~~~~-i~~~L~~G~~  483 (1389)
T TIGR03443       412 VGPDSNPTLSFTSGSEGIPKGVLGRHFSLAYYFPWMAKRF-------GLSENDKFTMLSGIAHDPIQRD-MFTPLFLGAQ  483 (1389)
T ss_pred             CCCCCceEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-------CCCCCCEEEEecCceecchHHH-HHHHHhCCCE
Confidence            4678999999999999999999999999988876655443       2567899999999999877765 7889999999


Q ss_pred             EEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCce
Q psy12107        136 MITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITI  212 (334)
Q Consensus       136 ~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i  212 (334)
                      +++.+.   .++..+++.|+++++|+++++|+++..|....   ...+++||.+++||+++++...+++.+.++  ++++
T Consensus       484 l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~--~~~l  558 (1389)
T TIGR03443       484 LLVPTADDIGTPGRLAEWMAKYGATVTHLTPAMGQLLSAQA---TTPIPSLHHAFFVGDILTKRDCLRLQTLAE--NVCI  558 (1389)
T ss_pred             EEEcChhhccCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcc---cccCCCccEEEEecccCCHHHHHHHHHhCC--CCEE
Confidence            998764   36889999999999999999999999987543   345789999999999999999999988776  6789


Q ss_pred             eeccCCCCCCCccccccc-------------------CC----------------CCccccCcccc------ccccccCC
Q psy12107        213 RQGYGMTETSPCTLYTRF-------------------AI----------------PEAKLGSTGQL------VMLGYLKN  251 (334)
Q Consensus       213 ~~~YG~tE~g~~~~~~~~-------------------~~----------------~~~~~~~~G~~------~~~gy~~~  251 (334)
                      +|.||+||++..++....                   +.                .....|..|++      +++||+++
T Consensus       559 ~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~  638 (1389)
T TIGR03443       559 VNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGL  638 (1389)
T ss_pred             EECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccccchhcCCC
Confidence            999999998754432110                   00                01122344444      78899999


Q ss_pred             ccccccccC----------------------------CCCceecCceEEEecCCcEEEEccCCceEEEcCEEee
Q psy12107        252 EEATKETVD----------------------------SEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA  297 (334)
Q Consensus       252 ~~~~~~~~~----------------------------~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~  297 (334)
                      |+.|.+.|.                            .++||+|||+|++++||.++++||.||+||++|++|+
T Consensus       639 p~~t~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~  712 (1389)
T TIGR03443       639 PELNAEKFVNNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIE  712 (1389)
T ss_pred             hhHhhhhccCCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEEec
Confidence            999998873                            2579999999999999999999999999999999998

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.7e-41  Score=325.54  Aligned_cols=251  Identities=27%  Similarity=0.408  Sum_probs=185.4

Q ss_pred             ccchhhhhc-C--CCCCC-CCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEE
Q psy12107         37 IFGFKQLVT-S--QPPDF-QLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLS  112 (334)
Q Consensus        37 ~~~~~~ll~-~--~~~~~-~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  112 (334)
                      ..+|++++. .  ..... ......++|+++|+|||||||.||||+++|+++.+++......+.....  ...+++++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~iiyTSGTTG~PKGV~lth~nl~~~~~~~~~~~~~~~~--~~~~~d~~ls  315 (700)
T PTZ00216        238 LVAWTDVVAKGHSAGSHHPLNIPENNDDLALIMYTSGTTGDPKGVMHTHGSLTAGILALEDRLNDLIG--PPEEDETYCS  315 (700)
T ss_pred             EEEHHHHHHhCCccccccccCCCCCcccEEEEEEeCCCCCcCcEEEEEhHHHHHHHHHHHhhcccccC--CCCCCCEEEE
Confidence            567888873 2  11111 1234568999999999999999999999999998877655433210000  1357889999


Q ss_pred             ecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHH-------HHHHcCCeEEeechHHHHHHhcCCCC----------
Q psy12107        113 VLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIE-------CVVKYKPTILFVVPSLLLFLASHPAV----------  175 (334)
Q Consensus       113 ~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-------~i~~~~~t~l~~~p~~l~~l~~~~~~----------  175 (334)
                      .+|++|+++... ....+..|+++++.   ++..+.+       .+++++||++.++|.++..+.+....          
T Consensus       316 ~lPl~H~~~~~~-~~~~l~~G~~v~~~---~~~~l~~~~~~~~~~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~  391 (700)
T PTZ00216        316 YLPLAHIMEFGV-TNIFLARGALIGFG---SPRTLTDTFARPHGDLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKR  391 (700)
T ss_pred             EChHHHHHHHHH-HHHHHHcCCEEEEC---CHHHhhhhhccccchHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHH
Confidence            999999998765 45557778877663   3455544       68899999999999999887542100          


Q ss_pred             ---------------Ccc---------------cc-ccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCc
Q psy12107        176 ---------------TPE---------------HL-ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPC  224 (334)
Q Consensus       176 ---------------~~~---------------~~-~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~  224 (334)
                                     ...               .+ +++|.+++||+++++++.++++..++    ++++.||+||++..
T Consensus       392 ~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~GGa~l~~~~~~~~~~~~~----~l~~~YG~TEt~~~  467 (700)
T PTZ00216        392 RVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLSGGGPLSAATQEFVNVVFG----MVIQGWGLTETVCC  467 (700)
T ss_pred             HHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEECCCCCCHHHHHHHHHHhh----hHhhccCccccccc
Confidence                           000               01 57999999999999999988877664    69999999999765


Q ss_pred             ccccccCCC-------------------C-----ccccCcccc------ccccccCCccccccccCCCCceecCceEEEe
Q psy12107        225 TLYTRFAIP-------------------E-----AKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYD  274 (334)
Q Consensus       225 ~~~~~~~~~-------------------~-----~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~  274 (334)
                      .+.......                   +     ..++..|++      ++.|||++|+.|++.|+.+|||+|||+|++|
T Consensus       468 ~~~~~~~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d  547 (700)
T PTZ00216        468 GGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIA  547 (700)
T ss_pred             ccccCCCCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEc
Confidence            432221110                   0     011123443      7899999999999999889999999999999


Q ss_pred             cCCcEEEEccCCceEE-EcCEEee
Q psy12107        275 EDGYFYIVDRTKELIK-VKGNQVA  297 (334)
Q Consensus       275 ~dg~~~~~GR~~d~i~-~~G~~i~  297 (334)
                      +||.++++||.||+|| .+|++|+
T Consensus       548 ~dG~l~i~GR~kd~ik~~~G~~I~  571 (700)
T PTZ00216        548 ANGTLRIIGRVKALAKNCLGEYIA  571 (700)
T ss_pred             CCCcEEEEEehHhheecCCCceec
Confidence            9999999999999999 6899999

>PRK07798 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4e-40  Score=310.31  Aligned_cols=323  Identities=20%  Similarity=0.256  Sum_probs=235.9

Q ss_pred             cchhhHHHHHHhhhCCCCceEEEEcCCCCC--CCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcc
Q psy12107          4 IPQLLEVGTKIGATLPNFRGTIVVGGEHDK--SKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSH   81 (334)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~   81 (334)
                      +.++.+.+.++...++..+.++.+++....  ..+.+++++++............ ..|.++++|||||||.||+|+++|
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~TSGTTG~PK~v~~s~  185 (533)
T PRK07798        107 EREFAPRVAEVLPRLPKLRTLVVVEDGSGNDLLPGAVDYEDALAAGSPERDFGER-SPDDLYLLYTGGTTGMPKGVMWRQ  185 (533)
T ss_pred             chhhHHHHHHHhccCCCccEEEEecCCcccccCCccccHHHHHhccCCcCCCCCC-CCCceEEEECCCCCCCCcEEEEec
Confidence            344556666666667777888887754321  11355777777422221111122 334578999999999999999999


Q ss_pred             hHHHHHhhhhccCcccc--CCCC------CCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcC--CCCHHHHHHHH
Q psy12107         82 NNCAVNLEQCVHPDIVN--HIPT------SDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP--KFTPETYIECV  151 (334)
Q Consensus        82 ~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~--~~~~~~~~~~i  151 (334)
                      +++..............  ....      ....+++++...|++|..++.. ++.++..|+++++.+  .+++..+++.|
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~i  264 (533)
T PRK07798        186 EDIFRVLLGGRDFATGEPIEDEEELAKRAAAGPGMRRFPAPPLMHGAGQWA-AFAALFSGQTVVLLPDVRFDADEVWRTI  264 (533)
T ss_pred             HHHHHHHhhhhhhhcccchhhhhhhcccccCCCCceEEEecchhhhhhHHH-HHHHHhcCceEEEecCCCcCHHHHHHHH
Confidence            99876543321111000  0000      0146688999999999999875 788999999999998  78999999999


Q ss_pred             HHcCCeEEeechHHHH-HHhcCCC-CCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccc
Q psy12107        152 VKYKPTILFVVPSLLL-FLASHPA-VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTR  229 (334)
Q Consensus       152 ~~~~~t~l~~~p~~l~-~l~~~~~-~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~  229 (334)
                      +++++|++.++|+.+. .+.+... ....+++++|.+++||+++++++.+++.+.++  +..+++.||+||++.+.....
T Consensus       265 ~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~i~~gG~~~~~~~~~~~~~~~~--~~~~~~~YG~tE~~~~~~~~~  342 (533)
T PRK07798        265 EREKVNVITIVGDAMARPLLDALEARGPYDLSSLFAIASGGALFSPSVKEALLELLP--NVVLTDSIGSSETGFGGSGTV  342 (533)
T ss_pred             HHhCCeEEEechHHHHHHHHHHhcccccCCCCceEEEEECCCCCCHHHHHHHHHHcC--CCeEEeeecccccccccccCC
Confidence            9999999999986543 3333322 23456789999999999999999999999986  568999999999875443221


Q ss_pred             cCC----------------------CCccccCc--cc-----cccccccCCccccccccCC---CCceecCceEEEecCC
Q psy12107        230 FAI----------------------PEAKLGST--GQ-----LVMLGYLKNEEATKETVDS---EGWLHTGDVAYYDEDG  277 (334)
Q Consensus       230 ~~~----------------------~~~~~~~~--G~-----~~~~gy~~~~~~~~~~~~~---~~~~~TGD~~~~~~dg  277 (334)
                      ...                      .....+..  |.     .++.||+++++.+...|..   ++||+|||++++++||
T Consensus       343 ~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~g~~~~g~l~~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~~g  422 (533)
T PRK07798        343 AKGAVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEIGWIARRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEADG  422 (533)
T ss_pred             CCCCccCCCCccCCCceEEEECCCCCCCCCCCCCeeEEEeecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcCCC
Confidence            100                      00111111  22     2678999999998887742   4699999999999999


Q ss_pred             cEEEEccCCceEEEcCEEee---------------------------------------------------------eee
Q psy12107        278 YFYIVDRTKELIKVKGNQVA---------------------------------------------------------PYK  300 (334)
Q Consensus       278 ~~~~~GR~~d~i~~~G~~i~---------------------------------------------------------~~~  300 (334)
                      ++++.||.+|+|+.+|++|+                                                         +++
T Consensus       423 ~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~~l~~~~  502 (533)
T PRK07798        423 TITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLAELRAHCRSSLAGYK  502 (533)
T ss_pred             cEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCCCHHHHHHHHhhhcccCC
Confidence            99999999999999999998                                                         455


Q ss_pred             eccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        301 KLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       301 ~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                      .|.. ++++++||+|++||++|+.|+++.++
T Consensus       503 ~P~~-i~~~~~iP~t~~GK~~~~~~~~~~~~  532 (533)
T PRK07798        503 VPRA-IWFVDEVQRSPAGKADYRWAKEQAAE  532 (533)
T ss_pred             CCeE-EEEcccCCCCCcchhhHHHHhhhhcc
Confidence            6665 99999999999999999999999875

>PRK06178 acyl-CoA synthetase; Validated

Probab=100.00  E-value=5.3e-40  Score=311.63  Aligned_cols=268  Identities=27%  Similarity=0.468  Sum_probs=215.9

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++++|||||||.||+|+++|+++..+.........      .....+++++.+|++|++++...++.++..|+
T Consensus       205 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~------~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~  278 (567)
T PRK06178        205 PPALDALAALNYTGGTTGMPKGCEHTQRDMVYTAAAAYAVAV------VGGEDSVFLSFLPEFWIAGENFGLLFPLFSGA  278 (567)
T ss_pred             CCCCCCeEEEEeCCCCCCCCceEEeccHHHHHHHHHHHHHhc------cCCCCcEEEEecchHHHHHHHHHHHHHHHcCc
Confidence            456789999999999999999999999998866543322211      25678899999999999998776888899999


Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeee--cCCCCCHHHHHHHHHHhccCCCce
Q psy12107        135 HMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTC--GAAPATKSLIDKFKQKVQREDITI  212 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~--~G~~l~~~~~~~~~~~~~~~~~~i  212 (334)
                      ++++.+++++..+++.|+++++|.+.++|..+..+.+.......++++++.+..  .++.+++++.+.+++.++.  ..+
T Consensus       279 ~~~l~~~~~~~~~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~  356 (567)
T PRK06178        279 TLVLLARWDAVAFMAAVERYRVTRTVMLVDNAVELMDHPRFAEYDLSSLRQVRVVSFVKKLNPDYRQRWRALTGS--VLA  356 (567)
T ss_pred             eEEEeCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhCCCCCCCCcchheeeeeccccccCCHHHHHHHHHHhCC--ccc
Confidence            999999899999999999999999999999999998765555566778887644  4589999999999999974  234


Q ss_pred             eeccCCCCCCCccccccc---------------C---------------CCCccccCcccc------ccccccCCccccc
Q psy12107        213 RQGYGMTETSPCTLYTRF---------------A---------------IPEAKLGSTGQL------VMLGYLKNEEATK  256 (334)
Q Consensus       213 ~~~YG~tE~g~~~~~~~~---------------~---------------~~~~~~~~~G~~------~~~gy~~~~~~~~  256 (334)
                      .+.||+||++........               +               ......+..|++      ++.||+++++.+.
T Consensus       357 ~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~  436 (567)
T PRK06178        357 EAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATA  436 (567)
T ss_pred             ccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCcccccccCChhhhh
Confidence            468999998754322110               0               000112333443      6789999999888


Q ss_pred             cccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee---------------------------------------
Q psy12107        257 ETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA---------------------------------------  297 (334)
Q Consensus       257 ~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~---------------------------------------  297 (334)
                      ..+ .+|||+|||++++++||+++++||.+|+|+.+|++|+                                       
T Consensus       437 ~~~-~dg~~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~  515 (567)
T PRK06178        437 EAL-RDGWLHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKP  515 (567)
T ss_pred             hcc-cCCceeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCC
Confidence            877 5889999999999999999999999999999999998                                       


Q ss_pred             ------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCCC
Q psy12107        298 ------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPK  333 (334)
Q Consensus       298 ------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~  333 (334)
                                        ++++| . +.++++||+|++||++|++|++++.+.+
T Consensus       516 ~~~~~~~~l~~~~~~~l~~~~~p-~-i~~v~~iP~t~~GKv~r~~l~~~~~~~~  567 (567)
T PRK06178        516 GADLTAAALQAWCRENMAVYKVP-E-IRIVDALPMTATGKVRKQDLQALAEELK  567 (567)
T ss_pred             CCcCCHHHHHHHHHhcCcccCCc-e-EEEeccCCCCCccceeHHHHHHHHHhhC
Confidence                              34444 3 7889999999999999999999987653

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=100.00  E-value=2.5e-40  Score=312.09  Aligned_cols=283  Identities=30%  Similarity=0.502  Sum_probs=221.3

Q ss_pred             ccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecch
Q psy12107         37 IFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPF  116 (334)
Q Consensus        37 ~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~  116 (334)
                      ..+++++++...+........++++++++|||||||.||+|+++|+++..............  .......+++++..|+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~s~~~l~~~~~~~~~~~~~~--~~~~~~~~~~l~~~p~  247 (541)
T TIGR03205       170 IVTYADFVKGAAAPAEWPAVTPDDVALLQYTGGTTGLPKGAMLTHGNLTSAVSIYDVWGKPS--RATRGDVERVICVLPL  247 (541)
T ss_pred             cccHHHHHhcCCCCCCCCCCCccCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHhhcccc--cccCCCCceEEEeccH
Confidence            34566666432222222345678999999999999999999999999875543221110000  0012345789999999


Q ss_pred             hhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHH
Q psy12107        117 FHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKS  196 (334)
Q Consensus       117 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~  196 (334)
                      +|.+++...++.++..|+++++...++++.+++.|+++++|++.++|+++..|.+........++++|.+++||++++++
T Consensus       248 ~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~i~~gg~~~~~~  327 (541)
T TIGR03205       248 FHIYALTVILLRSLRRGDLISLHQRFDVAAVFRDIEEKRATVFPGVPTMWIALANDPSLEKRDLSSLATIGSGGAPLPVE  327 (541)
T ss_pred             HHHHHHHHHHHHHHhcCCEEEecCCCCHHHHHHHHHHcCCeEeechHHHHHHHHhCccccccCccccceEEEccccCCHH
Confidence            99999887788889999999888888999999999999999999999999999876544455678999999999999999


Q ss_pred             HHHHHHHHhccCCCceeeccCCCCCCCcccccccCC-------------------------CCccccCcccc------cc
Q psy12107        197 LIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI-------------------------PEAKLGSTGQL------VM  245 (334)
Q Consensus       197 ~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-------------------------~~~~~~~~G~~------~~  245 (334)
                      +.+++++.++.   ++++.||+||++..++.+....                         .....+..|++      ++
T Consensus       328 ~~~~~~~~~~~---~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~  404 (541)
T TIGR03205       328 VANFFERKTGL---KLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVT  404 (541)
T ss_pred             HHHHHHHHhCC---CeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCcc
Confidence            99999988864   7999999999986544321100                         01112334554      56


Q ss_pred             ccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee----------------------------
Q psy12107        246 LGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA----------------------------  297 (334)
Q Consensus       246 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------------------------  297 (334)
                      .||+++++.+.+.| .++||+|||++++++||+++++||.+|+||.+|++|+                            
T Consensus       405 ~gy~~~~~~~~~~~-~~~~~~TGD~~~~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~  483 (541)
T TIGR03205       405 RGYWNRPEESAEAF-VGDRFLTGDIGYMDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRG  483 (541)
T ss_pred             ccccCChhhhHhhh-ccCCcccCceEEEcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccC
Confidence            78999999998888 5789999999999999999999999999999999998                            


Q ss_pred             ------------------------------eeeeccCcEEEeecCCCCCCchhhHHHHh
Q psy12107        298 ------------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELK  326 (334)
Q Consensus       298 ------------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~  326 (334)
                                                    +++.|.. |+++++||+|++||++|++|+
T Consensus       484 ~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~-i~~~~~iP~t~~gK~~r~~l~  541 (541)
T TIGR03205       484 EAAKAFVKLRPGAKPFSLDELRAFLAGKLGKHELPVA-VEFVDELPRTPVGKLSRHELR  541 (541)
T ss_pred             ceEEEEEEECCCCCcCCHHHHHHHHHhhcccccCCcE-EEEeccCCCCcccceeHhhcC
Confidence                                          3455555 999999999999999999885

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=100.00  E-value=2.7e-40  Score=309.27  Aligned_cols=264  Identities=20%  Similarity=0.262  Sum_probs=215.8

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++++|||||||.||+|+++|+++..+.......+       ....+++++...|++|..++.. ++.++..|+
T Consensus       137 ~~~~~~~~~il~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-------~~~~~~~~l~~~p~~~~~~~~~-~~~~l~~G~  208 (502)
T TIGR01734       137 AVKGDDNYYIIYTSGSTGNPKGVQISHDNLVSFTNWMLADF-------PLSEGKQFLNQAPFSFDLSVMD-LYPCLASGG  208 (502)
T ss_pred             cCCCCCeEEEEECCCCCCCCCEEEEecHHHHHHHHHHHHhC-------CCCCCceEEeecCceechhHHH-HHHHHHCCC
Confidence            34678999999999999999999999999988776554443       2567889999999999988765 788899999


Q ss_pred             EEEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107        135 HMITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT  211 (334)
Q Consensus       135 ~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~  211 (334)
                      ++++.+.   .++..+++.+++++++.+.++|+++..+..........+++++.++++|+++++++.+.+.+.++  ++.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~--~~~  286 (502)
T TIGR01734       209 TLHCLDKDITNNFKLLFEELPKTGLNVWVSTPSFVDMCLLDPNFNQENYPHLTHFLFCGEELPVKTAKALLERFP--KAT  286 (502)
T ss_pred             EEEEcCHHHhcCHHHHHHHHHHcCCeEEEEChhHHHHHHhccccccccCCcccEEEEcCCcCCHHHHHHHHHHCC--CcE
Confidence            9998765   58899999999999999999999998877655445667889999999999999999999999986  568


Q ss_pred             eeeccCCCCCCCcccccccC---------------------------CCCccccCcccc------ccccccCCccccccc
Q psy12107        212 IRQGYGMTETSPCTLYTRFA---------------------------IPEAKLGSTGQL------VMLGYLKNEEATKET  258 (334)
Q Consensus       212 i~~~YG~tE~g~~~~~~~~~---------------------------~~~~~~~~~G~~------~~~gy~~~~~~~~~~  258 (334)
                      +++.||+||++..+......                           ......+..|++      ++.||+++++.+...
T Consensus       287 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~  366 (502)
T TIGR01734       287 IYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEA  366 (502)
T ss_pred             EEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCCCCCCCCCCeeEEEEccccccccccCCcccchHh
Confidence            99999999987433211000                           001122333444      788999999988876


Q ss_pred             c---CCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee--------------------------------------
Q psy12107        259 V---DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA--------------------------------------  297 (334)
Q Consensus       259 ~---~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~--------------------------------------  297 (334)
                      |   ...+||+|||+|+++++ +++++||.+|+|+++|++|+                                      
T Consensus       367 ~~~~~~~~~~~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~  445 (502)
T TIGR01734       367 FFSHEGQPAYRTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVP  445 (502)
T ss_pred             heeCCCcEEEECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEe
Confidence            5   23469999999999877 99999999999999999999                                      


Q ss_pred             ------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhc
Q psy12107        298 ------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGT  330 (334)
Q Consensus       298 ------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~  330 (334)
                                              +++.|.. ++++++||+|++||++|++|++++.
T Consensus       446 ~~~~~~~~~~~~~~i~~~~~~~l~~~~~P~~-~~~v~~lP~t~~gKv~r~~l~~~~~  501 (502)
T TIGR01734       446 ETEDFEKEFQLTKAIKKELKKSLPAYMIPRK-FIYRDQLPLTANGKIDRKALAEEVN  501 (502)
T ss_pred             cccccccchhhHHHHHHHHhhhChhhcCCcE-EEEccccCCCCCCcccHHHHHHhhc
Confidence                                    3334555 8899999999999999999999865

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.6e-40  Score=307.69  Aligned_cols=310  Identities=24%  Similarity=0.374  Sum_probs=229.5

Q ss_pred             hHHHHHHhhhCC-CCceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHH
Q psy12107          8 LEVGTKIGATLP-NFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAV   86 (334)
Q Consensus         8 ~~~~~~~~~~~~-~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~   86 (334)
                      ...+.++.+..+ ..+.+++.+...   .....|++........   .....+++++++|||||||.||+|.++|.++..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGtTG~PK~v~~~~~~~~~  167 (502)
T PRK08276         94 ADTAAELAAELPAGVPLLLVVAGPV---PGFRSYEEALAAQPDT---PIADETAGADMLYSSGTTGRPKGIKRPLPGLDP  167 (502)
T ss_pred             hhHHHHHhhhccccccEEEEeCCCC---CccccHHHHHhcCCCC---CCCCCCcceEEEECCCCCCCCceEEEccCCcch
Confidence            344444444444 445555543211   1344566655322211   123457889999999999999999988877543


Q ss_pred             Hhh--hhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeechH
Q psy12107         87 NLE--QCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPS  164 (334)
Q Consensus        87 ~~~--~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~  164 (334)
                      ...  ......... .  ....++++++..|++|..++.. .+.++..|+++++.+.+++..+++.++++++|++.++|+
T Consensus       168 ~~~~~~~~~~~~~~-~--~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~  243 (502)
T PRK08276        168 DEAPGMMLALLGFG-M--YGGPDSVYLSPAPLYHTAPLRF-GMSALALGGTVVVMEKFDAEEALALIERYRVTHSQLVPT  243 (502)
T ss_pred             hhhhHHhhhhhhhc-c--cCCCCCEEEEcCcHHHHHHHHH-HHHHHhccceEEEcCCCCHHHHHHHHHHhCCeEEEehHH
Confidence            221  110100000 0  1246788999999999998877 457888999999988899999999999999999999999


Q ss_pred             HHHHHhcCCCC--CccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC----------
Q psy12107        165 LLLFLASHPAV--TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI----------  232 (334)
Q Consensus       165 ~l~~l~~~~~~--~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~----------  232 (334)
                      ++..+.+..+.  ...+++++|.++++|+++++++.+++.+.++.   .+++.||+||++.++.......          
T Consensus       244 ~~~~l~~~~~~~~~~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~---~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~  320 (502)
T PRK08276        244 MFVRMLKLPEEVRARYDVSSLRVAIHAAAPCPVEVKRAMIDWWGP---IIHEYYASSEGGGVTVITSEDWLAHPGSVGKA  320 (502)
T ss_pred             HHHHHHhCccccCCCCCcccceEEEecCCCCCHHHHHHHHHHhCc---HhhhhcccccccceeEecCccccccCCCccee
Confidence            99999876542  33567899999999999999999999998864   6899999999987443221110          


Q ss_pred             ------------CCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCE
Q psy12107        233 ------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGN  294 (334)
Q Consensus       233 ------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~  294 (334)
                                  .....+..|++      ++.||+++++.+...+.+++||+|||+++++++|.+++.||.+|++|.+|.
T Consensus       321 ~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~~~~i~~~G~  400 (502)
T PRK08276        321 VLGEVRILDEDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGGV  400 (502)
T ss_pred             cccEEEEECCCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcCCcCEEEeccCcceEEeCCE
Confidence                        01112333433      567999999999998877799999999999999999999999999999999


Q ss_pred             Eee------------------------------------------------------------eeeeccCcEEEeecCCC
Q psy12107        295 QVA------------------------------------------------------------PYKKLAGGVKFLETIPR  314 (334)
Q Consensus       295 ~i~------------------------------------------------------------~~~~~~~~i~~v~~lP~  314 (334)
                      +|+                                                            +++.|.. ++++++||+
T Consensus       401 ~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~l~~~~~p~~-i~~~~~lP~  479 (502)
T PRK08276        401 NIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRGRLAHYKCPRS-IDFEDELPR  479 (502)
T ss_pred             EeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCChhhHHHHHHHHHhhccCCCCCcE-EEEecCCCC
Confidence            998                                                            3334555 899999999


Q ss_pred             CCCchhhHHHHhhhhcC
Q psy12107        315 NPAGKVLRNELKVFGTN  331 (334)
Q Consensus       315 t~~GKi~r~~l~~~~~~  331 (334)
                      |++||++|++|++.+.+
T Consensus       480 t~~GKi~r~~L~~~~~~  496 (502)
T PRK08276        480 TPTGKLYKRRLRDRYWE  496 (502)
T ss_pred             CcccchhHHHHHHHHHh
Confidence            99999999999998643

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1.2e-40  Score=371.06  Aligned_cols=263  Identities=24%  Similarity=0.313  Sum_probs=221.4

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ....++++++|+|||||||.||||+++|+++.+.+.+....+       .....++++...|++|..++.. ++.++..|
T Consensus       650 ~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-------~~~~~d~~l~~~p~~fd~~~~~-~~~~L~~G  721 (5163)
T PRK12316        650 TELNPENLAYVIYTSGSTGKPKGAGNRHRALSNRLCWMQQAY-------GLGVGDTVLQKTPFSFDVSVWE-FFWPLMSG  721 (5163)
T ss_pred             CCCCCCCeEEEEECCCcCCCCCEeeEcCHHHHHHHHHHHHhc-------CCCCCCEEEeeCCeehHHHHHH-HHHHHhCC
Confidence            345789999999999999999999999999998877666554       2678899999999999999876 78899999


Q ss_pred             cEEEEcC---CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107        134 MHMITIP---KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI  210 (334)
Q Consensus       134 ~~~~~~~---~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~  210 (334)
                      +++++.+   .+++..+++.|+++++|++.++|++++.|.+...  ...++++|.+++|||++++++.+++.+.++  ++
T Consensus       722 ~~l~i~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~l~~~~~gGe~l~~~~~~~~~~~~~--~~  797 (5163)
T PRK12316        722 ARLVVAAPGDHRDPAKLVELINREGVDTLHFVPSMLQAFLQDED--VASCTSLRRIVCSGEALPADAQEQVFAKLP--QA  797 (5163)
T ss_pred             CEEEECCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhccc--cccCCCccEEEEeeccCCHHHHHHHHHhCC--CC
Confidence            9999975   3789999999999999999999999999986543  346789999999999999999999988876  56


Q ss_pred             ceeeccCCCCCCCcccccccCC------------------------CCccccCcccc------ccccccCCccccccccC
Q psy12107        211 TIRQGYGMTETSPCTLYTRFAI------------------------PEAKLGSTGQL------VMLGYLKNEEATKETVD  260 (334)
Q Consensus       211 ~i~~~YG~tE~g~~~~~~~~~~------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~  260 (334)
                      +++|.||+||++..++......                        .+...|..|++      +++||+++|+.|++.|.
T Consensus       798 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~  877 (5163)
T PRK12316        798 GLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFV  877 (5163)
T ss_pred             eEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEECCCCCCCCCCCceEEEecccccChhhCCChhhhhhhCC
Confidence            8999999999984332111000                        01122444443      78999999999998884


Q ss_pred             C------CCceecCceEEEecCCcEEEEccCCceEEEcCEEee-------------------------------------
Q psy12107        261 S------EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-------------------------------------  297 (334)
Q Consensus       261 ~------~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-------------------------------------  297 (334)
                      .      ++||+|||+|++++||.++++||.||+||++|++|+                                     
T Consensus       878 ~~~~~~~~~~y~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~~~~lva~vv~~~~~  957 (5163)
T PRK12316        878 PSPFVAGERMYRTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVDGKQLVGYVVLESEG  957 (5163)
T ss_pred             CCCCCCCCeeEecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcCCCeEEEEEEccCCC
Confidence            3      459999999999999999999999999999999999                                     


Q ss_pred             ----------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhh
Q psy12107        298 ----------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFG  329 (334)
Q Consensus       298 ----------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~  329 (334)
                                      ++++|.. |.++++||+|++|||||++|.+..
T Consensus       958 ~~~~~~l~~~l~~~Lp~y~vP~~-i~~v~~lP~t~~GKidr~~L~~~~ 1004 (5163)
T PRK12316        958 GDWREALKAHLAASLPEYMVPAQ-WLALERLPLTPNGKLDRKALPAPE 1004 (5163)
T ss_pred             CCCHHHHHHHHHhhCCCccCCCe-EEEHhhCCCCCCCChhHHhhcCcc
Confidence                            5667777 999999999999999999998753

>PRK13391 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-39  Score=305.25  Aligned_cols=313  Identities=25%  Similarity=0.356  Sum_probs=231.0

Q ss_pred             chhhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhh--cch
Q psy12107          5 PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKL--SHN   82 (334)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~--t~~   82 (334)
                      .+..+.+.++...++.....+++..+.. ......+++.+...+. .  ...+.++.++++|||||||.||+|++  +|.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~--~~~~~~~~a~il~TSGtTG~PKgv~~~~~~~  179 (511)
T PRK13391        104 AAKLDVARALLKQCPGVRHRLVLDGDGE-LEGFVGYAEAVAGLPA-T--PIADESLGTDMLYSSGTTGRPKGIKRPLPEQ  179 (511)
T ss_pred             hhhHHHHHHHHhcCCCceEEEEecCCCC-CcccccHHHHhcCCCC-C--CCCCcccccEEEECCCCCCCCCEEEEccccc
Confidence            3344555555555666666666543211 1133445554432211 1  11234567899999999999999995  465


Q ss_pred             HHHHHh---hhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEE
Q psy12107         83 NCAVNL---EQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTIL  159 (334)
Q Consensus        83 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l  159 (334)
                      +.....   ......+       .....+++++..|++|.+++.. .+.++..|+++++.+.++++.+++.++++++|++
T Consensus       180 ~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~p~~h~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~~  251 (511)
T PRK13391        180 PPDTPLPLTAFLQRLW-------GFRSDMVYLSPAPLYHSAPQRA-VMLVIRLGGTVIVMEHFDAEQYLALIEEYGVTHT  251 (511)
T ss_pred             hhhhhhHHHHHHHHhc-------CCCCCCeEEEcCCHHHHHHHHH-HHHHHHcCceEEECCCCCHHHHHHHHHHhCCeEE
Confidence            543322   1111111       2467889999999999988876 5778889999999888999999999999999999


Q ss_pred             eechHHHHHHhcCCCC--CccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC-----
Q psy12107        160 FVVPSLLLFLASHPAV--TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI-----  232 (334)
Q Consensus       160 ~~~p~~l~~l~~~~~~--~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-----  232 (334)
                      .++|+++..+.+....  ...+++++|.+++||+++++++.+.+.+.++.   .+++.||+||++.+........     
T Consensus       252 ~~~p~~~~~l~~~~~~~~~~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~---~v~~~YG~tE~~~~~~~~~~~~~~~~~  328 (511)
T PRK13391        252 QLVPTMFSRMLKLPEEVRDKYDLSSLEVAIHAAAPCPPQVKEQMIDWWGP---IIHEYYAATEGLGFTACDSEEWLAHPG  328 (511)
T ss_pred             EehHHHHHHHHhCchhhcccCCccceeEEEEccCCCCHHHHHHHHHHcCC---ceeeeeccccccceEEecCccccccCC
Confidence            9999999988765432  23457899999999999999999999998864   6999999999986543221100     


Q ss_pred             -----------------CCccccCcccc-----ccccccCCccccccccCCC-CceecCceEEEecCCcEEEEccCCceE
Q psy12107        233 -----------------PEAKLGSTGQL-----VMLGYLKNEEATKETVDSE-GWLHTGDVAYYDEDGYFYIVDRTKELI  289 (334)
Q Consensus       233 -----------------~~~~~~~~G~~-----~~~gy~~~~~~~~~~~~~~-~~~~TGD~~~~~~dg~~~~~GR~~d~i  289 (334)
                                       .....+..|++     ++.||+++++.+...+..+ +||+|||+++++++|++++.||.+|++
T Consensus       329 ~vG~~~~g~~~i~d~~~~~~~~g~~Gel~~~g~~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~~g~l~~~gR~~~~i  408 (511)
T PRK13391        329 TVGRAMFGDLHILDDDGAELPPGEPGTIWFEGGRPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDEDGYLYLTDRAAFMI  408 (511)
T ss_pred             CcCCcccceEEEECCCCCCCCCCCceEEEEecCcceEEcCChhHhHHhhccCCCEEecCCEEEECCCccEEEeccCCCEE
Confidence                             00112333433     5678999999888887655 999999999999999999999999999


Q ss_pred             EEcCEEee------------------------------------------------------------eeeeccCcEEEe
Q psy12107        290 KVKGNQVA------------------------------------------------------------PYKKLAGGVKFL  309 (334)
Q Consensus       290 ~~~G~~i~------------------------------------------------------------~~~~~~~~i~~v  309 (334)
                      |.+|.+|+                                                            +++.|.. |.++
T Consensus       409 ~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~-i~~~  487 (511)
T PRK13391        409 ISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCRQRLSRQKCPRS-IDFE  487 (511)
T ss_pred             EeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcccchHHHHHHHHHhhcccCcCCcE-EEEe
Confidence            99999998                                                            3345555 9999


Q ss_pred             ecCCCCCCchhhHHHHhhhhcCCC
Q psy12107        310 ETIPRNPAGKVLRNELKVFGTNPK  333 (334)
Q Consensus       310 ~~lP~t~~GKi~r~~l~~~~~~~~  333 (334)
                      +++|+|++||++|+.|++.+.+.+
T Consensus       488 ~~~P~t~~gKv~r~~l~~~~~~~~  511 (511)
T PRK13391        488 DELPRLPTGKLYKRLLRDRYWGNK  511 (511)
T ss_pred             ecCCCCCccceeHHHHHHHhhccC
Confidence            999999999999999999987653

>PRK12316 peptide synthase; Provisional

Probab=100.00  E-value=1e-40  Score=371.72  Aligned_cols=264  Identities=24%  Similarity=0.330  Sum_probs=219.9

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ....+++++||+|||||||.||||+++|+++.+.+......+       ...+.++++.+.|+.|..+... ++.++..|
T Consensus      2141 ~~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-------~~~~~d~~l~~~~~~fd~~~~~-~~~~L~~G 2212 (5163)
T PRK12316       2141 VQLAGENLAYVIYTSGSTGLPKGVAVSHGALVAHCQAAGERY-------ELSPADCELQFMSFSFDGAHEQ-WFHPLLNG 2212 (5163)
T ss_pred             CCCCCCCeEEEEeCccCCCCCCEeEEccHHHHHHHHHHHHhc-------CCCCcceEEEecCchHHHHHHH-HHHHHhCC
Confidence            346789999999999999999999999999998887665544       2678899999999999877765 78999999


Q ss_pred             cEEEEcCC--CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107        134 MHMITIPK--FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT  211 (334)
Q Consensus       134 ~~~~~~~~--~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~  211 (334)
                      +++++.+.  +++..+++.|+++++|+++++|+++..|.+..... ...++||.+++|||++++++.++|.+.++  +..
T Consensus      2213 ~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~-~~~~~lr~~~~gGe~l~~~~~~~~~~~~~--~~~ 2289 (5163)
T PRK12316       2213 ARVLIRDDELWDPEQLYDEMERHGVTILDFPPVYLQQLAEHAERD-GRPPAVRVYCFGGEAVPAASLRLAWEALR--PVY 2289 (5163)
T ss_pred             CEEEeCCcccCCHHHHHHHHHHcCCeEEEcChHHHHHHHhhhhcc-cCCcceeEEEEecccCCHHHHHHHHHhCC--CcE
Confidence            99977653  68999999999999999999999999998754322 23458999999999999999999998876  568


Q ss_pred             eeeccCCCCCCCcccccccCC---------------------------CCccccCcccc------ccccccCCccccccc
Q psy12107        212 IRQGYGMTETSPCTLYTRFAI---------------------------PEAKLGSTGQL------VMLGYLKNEEATKET  258 (334)
Q Consensus       212 i~~~YG~tE~g~~~~~~~~~~---------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~  258 (334)
                      ++|.||+||++..++......                           .....|..|++      +++||+++|+.|++.
T Consensus      2290 l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~ 2369 (5163)
T PRK12316       2290 LFNGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAER 2369 (5163)
T ss_pred             EEECccchhheeeeeeeecccccccCCCcCCcccccCCCEEEEECCCCCCCCCCCeeEEEecchhhcccccCChhhhhhh
Confidence            999999999986443211100                           01122344444      789999999999998


Q ss_pred             cCC-------CCceecCceEEEecCCcEEEEccCCceEEEcCEEee----------------------------------
Q psy12107        259 VDS-------EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA----------------------------------  297 (334)
Q Consensus       259 ~~~-------~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------------------------------  297 (334)
                      |..       ++||+|||+|++++||.++++||+||+||++|++|+                                  
T Consensus      2370 f~~~~~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~v 2449 (5163)
T PRK12316       2370 FVPDPFSASGERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGASGKQLVAYV 2449 (5163)
T ss_pred             ccCCCCCCCCCeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecCCCeEEEEEE
Confidence            843       359999999999999999999999999999999999                                  


Q ss_pred             ----------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhh
Q psy12107        298 ----------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFG  329 (334)
Q Consensus       298 ----------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~  329 (334)
                                            .|++|.. +.++++||+|++|||+|++|++..
T Consensus      2450 ~~~~~~~~~~~~l~~~l~~~Lp~~~vP~~-~~~l~~lP~t~~GKidR~~L~~~~ 2502 (5163)
T PRK12316       2450 VPDDAAEDLLAELRAWLAARLPAYMVPAH-WVVLERLPLNPNGKLDRKALPKPD 2502 (5163)
T ss_pred             EecCCCccCHHHHHHHHHhhCchhcCcce-EeeecccCCCCCCccCHhhcCCCc
Confidence                                  5556666 999999999999999999998764

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=100.00  E-value=2.2e-40  Score=341.15  Aligned_cols=261  Identities=22%  Similarity=0.301  Sum_probs=214.7

Q ss_pred             CCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcE
Q psy12107         56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMH  135 (334)
Q Consensus        56 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~  135 (334)
                      ..++++++|+|||||||.||||+++|+++.+.+.+....+       .....+++++..|++|..++.. ++.++..|++
T Consensus       595 ~~~~~~a~i~~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-------~~~~~d~~l~~~~~~fd~~~~~-~~~~l~~G~~  666 (1296)
T PRK10252        595 SQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRLLWMQNHY-------PLTADDVVLQKTPCSFDVSVWE-FFWPFIAGAK  666 (1296)
T ss_pred             CCCCCeEEEEECCCCCCCCCEEEeccHHHHHHHHHHHHhc-------CCCCCCEEEEeCCcchhhhHHH-HHHHHhCCCE
Confidence            3578999999999999999999999999998877665544       3678899999999998888765 6888999999


Q ss_pred             EEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCC--ccccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107        136 MITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVT--PEHLASIREVTCGAAPATKSLIDKFKQKVQREDI  210 (334)
Q Consensus       136 ~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~--~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~  210 (334)
                      +++.+.   .++..+++.|+++++|++.++|+++..+++.....  ...++++|.+++||+++++++.+.|.+.++   +
T Consensus       667 l~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~---~  743 (1296)
T PRK10252        667 LVMAEPEAHRDPLAMQQFFAEYGVTTTHFVPSMLAAFVASLTPEGARQSCASLRQVFCSGEALPADLCREWQQLTG---A  743 (1296)
T ss_pred             EEECChhccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhhccccccccCCCccEEEEecCCCCHHHHHHHHhcCC---C
Confidence            998763   68999999999999999999999999988764322  234678999999999999999999998775   4


Q ss_pred             ceeeccCCCCCCCcccccccCC-----------------------------CCccccCcccc------ccccccCCcccc
Q psy12107        211 TIRQGYGMTETSPCTLYTRFAI-----------------------------PEAKLGSTGQL------VMLGYLKNEEAT  255 (334)
Q Consensus       211 ~i~~~YG~tE~g~~~~~~~~~~-----------------------------~~~~~~~~G~~------~~~gy~~~~~~~  255 (334)
                      +++|.||+||++...+......                             .+...|..|++      +++||+++++.|
T Consensus       744 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t  823 (1296)
T PRK10252        744 PLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLT  823 (1296)
T ss_pred             EEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEECCCCCCCCCCCceEEEecccccchhhCCCcccc
Confidence            8999999999876443221100                             01122333433      788999999999


Q ss_pred             ccccCCC------CceecCceEEEecCCcEEEEccCCceEEEcCEEee--------------------------------
Q psy12107        256 KETVDSE------GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA--------------------------------  297 (334)
Q Consensus       256 ~~~~~~~------~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~--------------------------------  297 (334)
                      .+.|..+      +||+|||+|++++||.++++||.||+||++|++|+                                
T Consensus       824 ~~~f~~~~~~~~~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~  903 (1296)
T PRK10252        824 ASRFIADPFAPGERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGG  903 (1296)
T ss_pred             hhhcccCCCCCCCEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCC
Confidence            9888543      49999999999999999999999999999999998                                


Q ss_pred             -------------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhh
Q psy12107        298 -------------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVF  328 (334)
Q Consensus       298 -------------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~  328 (334)
                                                     ++++|.. +.++++||+|++|||+|++|++.
T Consensus       904 ~~~~lva~v~~~~~~~~~~~~l~~~l~~~Lp~~~~P~~-~~~~~~lP~t~~GKidr~~L~~~  964 (1296)
T PRK10252        904 DARQLVGYLVSQSGLPLDTSALQAQLRERLPPHMVPVV-LLQLDQLPLSANGKLDRKALPLP  964 (1296)
T ss_pred             CccEEEEEEEcCCCCCCCHHHHHHHHHhhCchhcCCcE-EEEecCCCCCCCcChhHHhcCCC
Confidence                                           3334444 88899999999999999999874

>PRK06164 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.4e-40  Score=311.25  Aligned_cols=262  Identities=23%  Similarity=0.330  Sum_probs=215.7

Q ss_pred             CCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcE
Q psy12107         56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMH  135 (334)
Q Consensus        56 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~  135 (334)
                      ..++++++++|||||||.||+|+++|+++..+.......+       ....++++++.+|++|.+++.. ++.++..|++
T Consensus       178 ~~~~~~~~i~~TSGtTG~pK~v~~s~~~l~~~~~~~~~~~-------~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~  249 (540)
T PRK06164        178 ADPDAGALLFTTSGTTSGPKLVLHRQATLLRHARAIARAY-------GYDPGAVLLAALPFCGVFGFST-LLGALAGGAP  249 (540)
T ss_pred             CCCCceEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-------CCCCCCEEEEcCCchhHHHHHH-HHHHHhcCce
Confidence            3468999999999999999999999999988776555443       2568899999999999999975 7899999999


Q ss_pred             EEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecC-CCCCHHHHHHHHHHhccCCCceee
Q psy12107        136 MITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGA-APATKSLIDKFKQKVQREDITIRQ  214 (334)
Q Consensus       136 ~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G-~~l~~~~~~~~~~~~~~~~~~i~~  214 (334)
                      +++.+.+++..+++.|+++++|+++++|+++..|.+.. ....++++++.+.++| .+...++.+++.+.    ++++++
T Consensus       250 ~~~~~~~~~~~~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  324 (540)
T PRK06164        250 LVCEPVFDAARTARALRRHRVTHTFGNDEMLRRILDTA-GERADFPSARLFGFASFAPALGELAALARAR----GVPLTG  324 (540)
T ss_pred             EEecCCCCHHHHHHHHHHhCCeeecCCHHHHHHHHHhh-cccCCCcceeeeeeccCCcchHHHHHHHhhc----CCceec
Confidence            99999899999999999999999999999999998762 3456788899887766 45556666666654    458999


Q ss_pred             ccCCCCCCCcccccccCC---------------------------CCccccCcccc------ccccccCCccccccccCC
Q psy12107        215 GYGMTETSPCTLYTRFAI---------------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDS  261 (334)
Q Consensus       215 ~YG~tE~g~~~~~~~~~~---------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~  261 (334)
                      .||+||++.+++......                           .....+..|++      ++.||+++++.+...|..
T Consensus       325 ~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~  404 (540)
T PRK06164        325 LYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTD  404 (540)
T ss_pred             ceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhhhhcccC
Confidence            999999976543321100                           00112333444      788999999999999988


Q ss_pred             CCceecCceEEEecCCcEEEEccCCceEEEcCEEee--------------------------------------------
Q psy12107        262 EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA--------------------------------------------  297 (334)
Q Consensus       262 ~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~--------------------------------------------  297 (334)
                      ++||+|||+|+++++|.+++.||.+|+||++|++|+                                            
T Consensus       405 ~~~~~TGDl~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~vv~~~~~~~~~  484 (540)
T PRK06164        405 DGYFRTGDLGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATRDGKTVPVAFVIPTDGASPDE  484 (540)
T ss_pred             CCceecCCeEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCCCCceeEEEEEEeCCCCCCCH
Confidence            999999999999999999999999999999999999                                            


Q ss_pred             ------------eeeeccCcEEEeecCCCCCCc---hhhHHHHhhhhcC
Q psy12107        298 ------------PYKKLAGGVKFLETIPRNPAG---KVLRNELKVFGTN  331 (334)
Q Consensus       298 ------------~~~~~~~~i~~v~~lP~t~~G---Ki~r~~l~~~~~~  331 (334)
                                  +++.|.. |++++++|+|++|   |++|++|+++.++
T Consensus       485 ~~l~~~~~~~l~~~~~P~~-i~~~~~~P~t~~g~~~Ki~r~~L~~~~~~  532 (540)
T PRK06164        485 AGLMAACREALAGFKVPAR-VQVVEAFPVTESANGAKIQKHRLREMAQA  532 (540)
T ss_pred             HHHHHHHHhhcccCcCCcE-EEEecCCCCCCCCccccccHHHHHHHHHH
Confidence                        4556666 9999999999999   9999999998654

>PRK12467 peptide synthase; Provisional

Probab=100.00  E-value=2.7e-40  Score=363.37  Aligned_cols=263  Identities=25%  Similarity=0.356  Sum_probs=220.2

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ....+++++||+|||||||.||||+++|+++.+........+       ...++++++...|+.|..+... ++.++..|
T Consensus       651 ~~~~~~~~a~iiyTSGSTG~PKgV~~th~~l~~~~~~~~~~~-------~~~~~d~~l~~~~~~fd~~~~~-~~~~L~~G  722 (3956)
T PRK12467        651 VALDPDNLAYVIYTSGSTGQPKGVAISHGALANYVCVIAERL-------QLAADDSMLMVSTFAFDLGVTE-LFGALASG  722 (3956)
T ss_pred             CCCCCCCeEEEEECCCCCCCcCEEEEecHHHHHHHHHHHHhc-------CCCCCCEEEEecCccHhHHHHH-HHHHHhCC
Confidence            345789999999999999999999999999998877665544       2678899999999999988876 78999999


Q ss_pred             cEEEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107        134 MHMITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI  210 (334)
Q Consensus       134 ~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~  210 (334)
                      +++++.+.   +++..+++.|+++++|+++++|+++..|.+...  .....++|.+++|||++++++.+.|.+.++  ++
T Consensus       723 ~~lv~~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~--~~  798 (3956)
T PRK12467        723 ATLHLLPPDCARDAEAFAALMADQGVTVLKIVPSHLQALLQASR--VALPRPQRALVCGGEALQVDLLARVRALGP--GA  798 (3956)
T ss_pred             CEEEEcCccccCCHHHHHHHHHHcCCeEEEcCHHHHHHHHhhhc--cccCCcccEEEEEeecCCHHHHHHHHHhCC--CC
Confidence            99999874   689999999999999999999999999987543  234567899999999999999999999875  56


Q ss_pred             ceeeccCCCCCCCcccccccCC--------------------------CCccccCcccc------ccccccCCccccccc
Q psy12107        211 TIRQGYGMTETSPCTLYTRFAI--------------------------PEAKLGSTGQL------VMLGYLKNEEATKET  258 (334)
Q Consensus       211 ~i~~~YG~tE~g~~~~~~~~~~--------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~  258 (334)
                      +++|.||+||++..++......                          .+...|..|++      +++||+++|+.|++.
T Consensus       799 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~T~~~  878 (3956)
T PRK12467        799 RLINHYGPTETTVGVSTYELSDEERDFGNVPIGQPLANLGLYILDHYLNPVPVGVVGELYIGGAGLARGYHRRPALTAER  878 (3956)
T ss_pred             EEEeCcCCChhhhheeeEecccccccCCCCcccCCcCCCEEEEECCCCCCCCCCCceEEEecccccchhhcCCccccHhh
Confidence            8999999999986543221110                          01122344444      789999999999998


Q ss_pred             cCC-------CCceecCceEEEecCCcEEEEccCCceEEEcCEEee----------------------------------
Q psy12107        259 VDS-------EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA----------------------------------  297 (334)
Q Consensus       259 ~~~-------~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------------------------------  297 (334)
                      |..       .+||+|||+|++++||.++++||.||+||++|++|+                                  
T Consensus       879 F~~~p~~~~g~r~yrTGDl~~~~~dG~l~~~GR~d~~vki~G~rI~~~eIE~~L~~~p~V~~a~v~~~~~~~~~~lva~v  958 (3956)
T PRK12467        879 FVPDPFGADGGRLYRTGDLARYRADGVIEYLGRMDHQVKIRGFRIELGEIEARLLAQPGVREAVVLAQPGDAGLQLVAYL  958 (3956)
T ss_pred             CcCCCCCCCCceeEecCceeEEcCCCcEEEeccccCeEEECCEecCHHHHHHHHHhCCCcceEEEEEEcCCCCcEEEEEE
Confidence            843       349999999999999999999999999999999999                                  


Q ss_pred             ---------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhh
Q psy12107        298 ---------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFG  329 (334)
Q Consensus       298 ---------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~  329 (334)
                                                 +|++|.. +.++++||+|++|||+|++|++..
T Consensus       959 v~~~~~~~~~~~~~~~~l~~~l~~~Lp~y~vP~~-~~~l~~lP~t~~GKidR~~L~~~~ 1016 (3956)
T PRK12467        959 VPAAVADGAEHQATRDELKAQLRQVLPDYMVPAH-LLLLDSLPLTPNGKLDRKALPKPD 1016 (3956)
T ss_pred             EecccccccccccCHHHHHHHHHhhCchhcCCce-EeeecccCCCCCCCcCHhhcCCcc
Confidence                                       4455666 899999999999999999998764

>PLN02479 acetate-CoA ligase

Probab=100.00  E-value=3.6e-39  Score=305.71  Aligned_cols=280  Identities=25%  Similarity=0.428  Sum_probs=209.2

Q ss_pred             ccchhhhhcCCCCCCC-CCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecc
Q psy12107         37 IFGFKQLVTSQPPDFQ-LPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLP  115 (334)
Q Consensus        37 ~~~~~~ll~~~~~~~~-~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  115 (334)
                      ...|++++....+... ......+++++++|||||||.||+|+++|+++..........+       ....++++++..|
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~yTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-------~~~~~~~~~~~~p  244 (567)
T PLN02479        172 AIEYEKFLETGDPEFAWKPPADEWQSIALGYTSGTTASPKGVVLHHRGAYLMALSNALIW-------GMNEGAVYLWTLP  244 (567)
T ss_pred             cccHHHHHhccccccccCCCCCcccceEEEECCCCCCCCcEEEeccHHHHHHHHHHHhhc-------CCCCCCEEEEecc
Confidence            4467776632211111 1223345788899999999999999999999765443322222       2567889999999


Q ss_pred             hhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCc-cccccceeeeecCCCCC
Q psy12107        116 FFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTP-EHLASIREVTCGAAPAT  194 (334)
Q Consensus       116 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~-~~~~~lr~v~~~G~~l~  194 (334)
                      ++|.+++...+...+..|.+++ ...+++..+++.++++++|+++++|+++..|.+...... ..+++++.++++|++++
T Consensus       245 ~~h~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~l~~~~~~G~~~~  323 (567)
T PLN02479        245 MFHCNGWCFTWTLAALCGTNIC-LRQVTAKAIYSAIANYGVTHFCAAPVVLNTIVNAPKSETILPLPRVVHVMTAGAAPP  323 (567)
T ss_pred             hhhhhhHHHHHHHHhhcCceEe-ccCCCHHHHHHHHHHcCCeEEEecHHHHHHHHhhhhhcccccccceeEEEEcCCCCC
Confidence            9999998765445556666554 466899999999999999999999999999987644222 25788999999999999


Q ss_pred             HHHHHHHHHHhccCCCceeeccCCCCCCCcccccc-------------------cC----------------CCCccc-c
Q psy12107        195 KSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTR-------------------FA----------------IPEAKL-G  238 (334)
Q Consensus       195 ~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~-------------------~~----------------~~~~~~-~  238 (334)
                      +++.+++++. +   .++++.||+||+++......                   .+                ..+... +
T Consensus       324 ~~~~~~~~~~-~---~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g  399 (567)
T PLN02479        324 PSVLFAMSEK-G---FRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADG  399 (567)
T ss_pred             HHHHHHHHhc-C---CceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCC
Confidence            9999998875 3   47999999999854222110                   00                000001 1


Q ss_pred             -Ccccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee--------------
Q psy12107        239 -STGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA--------------  297 (334)
Q Consensus       239 -~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~--------------  297 (334)
                       ..|++      ++.||+++++.+.+.| .++||+|||+++++++|+++++||.+|+||.+|++|+              
T Consensus       400 ~~~GEl~v~g~~~~~GY~~~~~~t~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v  478 (567)
T PLN02479        400 KTMGEIVMRGNMVMKGYLKNPKANEEAF-ANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAV  478 (567)
T ss_pred             CCceEEEEeccchhhhhhcCcccccchh-cCCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCccc
Confidence             23443      6789999999999998 5899999999999999999999999999999999998              


Q ss_pred             ------------------------------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhh
Q psy12107        298 ------------------------------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFG  329 (334)
Q Consensus       298 ------------------------------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~  329 (334)
                                                                      +++.|.. +.+ ++||+|++||++|++|++..
T Consensus       479 ~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~-~~~-~~iP~t~~gKv~r~~L~~~~  556 (567)
T PLN02479        479 LEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCRERLPAYWVPKS-VVF-GPLPKTATGKIQKHVLRAKA  556 (567)
T ss_pred             ceeeEEeccchhcCceeEEEEEecCcccccchhhhHHHHHHHHHhhcccccCCce-EEe-ccCCCCCccCeeHHHHHHHH
Confidence                                                            2233443 544 67999999999999999886


Q ss_pred             cC
Q psy12107        330 TN  331 (334)
Q Consensus       330 ~~  331 (334)
                      ..
T Consensus       557 ~~  558 (567)
T PLN02479        557 KE  558 (567)
T ss_pred             Hh
Confidence            54

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=100.00  E-value=1.9e-39  Score=303.61  Aligned_cols=264  Identities=23%  Similarity=0.334  Sum_probs=216.5

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++++|||||||.||+|.++|+++..+.......+       ....+++++...|++|..+... ++.++..|+
T Consensus       139 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-------~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~g~  210 (503)
T PRK04813        139 AVKGDDNYYIIFTSGTTGKPKGVQISHDNLVSFTNWMLEDF-------ALPEGPQFLNQAPYSFDLSVMD-LYPTLASGG  210 (503)
T ss_pred             cCCCCCcEEEEECCCCCCCCcEEEeehHHHHHHHHHHHHHc-------CCCcCceeeecCCcchhHhHHH-HHHHHhcCC
Confidence            45678999999999999999999999999987766555443       2567889999999999888765 678899999


Q ss_pred             EEEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107        135 HMITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT  211 (334)
Q Consensus       135 ~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~  211 (334)
                      ++++.+.   .++..+++.+++++++++..+|+++..+..........++++|.++++|+++++.+.+++.+.++  ++.
T Consensus       211 ~~v~~~~~~~~~~~~~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~i~~~G~~l~~~~~~~~~~~~~--~~~  288 (503)
T PRK04813        211 TLVALPKDMTANFKQLFETLPQLPINVWVSTPSFADMCLLDPSFNEEHLPNLTHFLFCGEELPHKTAKKLLERFP--SAT  288 (503)
T ss_pred             EEEEcChhhhcCHHHHHHHHHHcCCeEEEeChHHHHHHHHhhccCcccCCCceEEEEecCcCCHHHHHHHHHHCC--Cce
Confidence            9988775   58899999999999999999999998876655445667889999999999999999999999996  568


Q ss_pred             eeeccCCCCCCCcccccccC---------------------------CCCccccCcccc------ccccccCCccccccc
Q psy12107        212 IRQGYGMTETSPCTLYTRFA---------------------------IPEAKLGSTGQL------VMLGYLKNEEATKET  258 (334)
Q Consensus       212 i~~~YG~tE~g~~~~~~~~~---------------------------~~~~~~~~~G~~------~~~gy~~~~~~~~~~  258 (334)
                      +++.||+||++..++.....                           ......+..|++      ++.||+++++.+...
T Consensus       289 ~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~  368 (503)
T PRK04813        289 IYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEA  368 (503)
T ss_pred             EEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCCceEEEEeccccccccCCChhHhHHh
Confidence            99999999987543321100                           001112334444      678999999988887


Q ss_pred             cC---CCCceecCceEEEecCCcEEEEccCCceEEEcCEEee--------------------------------------
Q psy12107        259 VD---SEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA--------------------------------------  297 (334)
Q Consensus       259 ~~---~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~--------------------------------------  297 (334)
                      |.   ..+||+|||++++ ++|++++.||.+|+|+.+|++|+                                      
T Consensus       369 ~~~~~g~~~~~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~  447 (503)
T PRK04813        369 FFTFDGQPAYHTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPK  447 (503)
T ss_pred             hccCCCceeEECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEec
Confidence            63   3459999999999 99999999999999999999999                                      


Q ss_pred             -----------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhc
Q psy12107        298 -----------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGT  330 (334)
Q Consensus       298 -----------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~  330 (334)
                                             +++.|.. |+++++||+|++||++|++|++.+.
T Consensus       448 ~~~~~~~~~~~~~l~~~~~~~l~~~~~P~~-i~~~~~~P~t~~gKv~r~~l~~~~~  502 (503)
T PRK04813        448 EEDFEREFELTKAIKKELKERLMEYMIPRK-FIYRDSLPLTPNGKIDRKALIEEVN  502 (503)
T ss_pred             cccccccchhHHHHHHHHHhhCccccCCeE-EEEeccCCCCCCCCCcHHHHHHHhc
Confidence                                   3334455 8899999999999999999998865

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=4.6e-40  Score=364.15  Aligned_cols=260  Identities=23%  Similarity=0.323  Sum_probs=220.1

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++|||+|||||||.||||+++|+++.+........+       ...+.++++...++.+..++.. ++.++..|+
T Consensus      3865 ~~~~~~~ayvi~TSGSTG~PKGV~~~h~~~~~~~~~~~~~~-------~~~~~~~~~~~~s~~fd~s~~~-~~~~l~~G~ 3936 (4334)
T PRK05691       3865 YSGPDNLAYVIYTSGSTGLPKGVMVEQRGMLNNQLSKVPYL-------ALSEADVIAQTASQSFDISVWQ-FLAAPLFGA 3936 (4334)
T ss_pred             CCCCCceEEEEECCCCCCCCCEEEeehHHHHHHHHHHHHhc-------CCCccceEEEecCCchhHHHHH-HHHHHhCCC
Confidence            45789999999999999999999999999998877665544       3678999999999998888877 788899999


Q ss_pred             EEEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107        135 HMITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT  211 (334)
Q Consensus       135 ~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~  211 (334)
                      ++++.+.   .++..+++.++++++|++.++|+++..+....   ...+++||.+++|||++++++.++|.+.++  +++
T Consensus      3937 ~l~i~~~~~~~~~~~l~~~~~~~~vt~~~~~Ps~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~--~~~ 4011 (4334)
T PRK05691       3937 RVEIVPNAIAHDPQGLLAHVQAQGITVLESVPSLIQGMLAED---RQALDGLRWMLPTGEAMPPELARQWLQRYP--QIG 4011 (4334)
T ss_pred             EEEEcCccccCCHHHHHHHHHHcCCeEEEeCHHHHHHHHhhc---cccCCCceEEEecCCcCCHHHHHHHHHhCC--CCe
Confidence            9998764   57899999999999999999999999887542   345678999999999999999999998876  678


Q ss_pred             eeeccCCCCCCCcccccccCC--------------------------CCccccCcccc------ccccccCCcccccccc
Q psy12107        212 IRQGYGMTETSPCTLYTRFAI--------------------------PEAKLGSTGQL------VMLGYLKNEEATKETV  259 (334)
Q Consensus       212 i~~~YG~tE~g~~~~~~~~~~--------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~  259 (334)
                      ++|.||+||++..++......                          .....|..|++      +++||+++|+.|+++|
T Consensus      4012 l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f 4091 (4334)
T PRK05691       4012 LVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLDEALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAF 4091 (4334)
T ss_pred             EEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEECCCCCCCCCCCceEEEEecccccccccCCcccchhhc
Confidence            999999999986443221100                          01223444544      7899999999999998


Q ss_pred             CC-------CCceecCceEEEecCCcEEEEccCCceEEEcCEEee-----------------------------------
Q psy12107        260 DS-------EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-----------------------------------  297 (334)
Q Consensus       260 ~~-------~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-----------------------------------  297 (334)
                      .+       ++||||||+|++++||+++++||.||+||++|++|.                                   
T Consensus      4092 ~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~riel~eIE~~l~~~~~v~~a~v~~~~~~~~~~l~a~~~ 4171 (4334)
T PRK05691       4092 VPHPFGAPGERLYRTGDLARRRSDGVLEYVGRIDHQVKIRGYRIELGEIEARLHEQAEVREAAVAVQEGVNGKHLVGYLV 4171 (4334)
T ss_pred             ccCCCCCCCceeeccCcceeecCCCcEEEecccCCcEEeceEEecHHHHHHHHHhCCCccEEEEEEecCCCCcEEEEEEe
Confidence            43       469999999999999999999999999999999998                                   


Q ss_pred             ------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhh
Q psy12107        298 ------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVF  328 (334)
Q Consensus       298 ------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~  328 (334)
                                              +|++|.. +.++++||+|++|||||++|++.
T Consensus      4172 ~~~~~~~~~~~~~~l~~~l~~~Lp~ymvP~~-~~~~~~lP~t~~GKidr~~L~~~ 4225 (4334)
T PRK05691       4172 PHQTVLAQGALLERIKQRLRAELPDYMVPLH-WLWLDRLPLNANGKLDRKALPAL 4225 (4334)
T ss_pred             CCcccccchHHHHHHHHHHHhhCChhhcCcc-eeecccCCCCCCCcccHhhcCCC
Confidence                                    5667777 89999999999999999999875

>PRK08308 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-39  Score=295.92  Aligned_cols=251  Identities=22%  Similarity=0.305  Sum_probs=201.9

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++++|||||||.||+|+++|+++..+.......+       ....+++.+..+|++|.+++...++.++..|+
T Consensus        97 ~~~~~~~~~i~~TSGtTG~PKgv~~s~~~l~~~~~~~~~~~-------~~~~~~~~~~~~p~~h~~g~~~~~~~~l~~G~  169 (414)
T PRK08308         97 NYLAEEPSLLQYSSGTTGEPKLIRRSWTEIDREIEAYNEAL-------NCEQDETPIVACPVTHSYGLICGVLAALTRGS  169 (414)
T ss_pred             CCCCCCceEEEECCCCCCCCcEEEEehHhHHHHHHHHHHhh-------CCCcccEEEEecCcHHHHHHHHHHHHHHHcCC
Confidence            34578999999999999999999999999988776555443       25677899999999999998777889999999


Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceee
Q psy12107        135 HMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ  214 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~  214 (334)
                      ++++.+.+++..+++.++++++++++++|+++..|.+....    ..+++.++++|+++++++.+++++..    .++++
T Consensus       170 ~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~----~~~l~~~~~~G~~l~~~~~~~~~~~~----~~~~~  241 (414)
T PRK08308        170 KPVIITNKNPKFALNILRNTPQHILYAVPLMLHILGRLLPG----TFQFHAVMTSGTPLPEAWFYKLRERT----TYMMQ  241 (414)
T ss_pred             EEEecCCCCHHHHHHHHHHhCCeEEEcCHHHHHHHHhcCCc----cccccEEEEccCCCCHHHHHHHHHhC----Chhhh
Confidence            99999889999999999999999999999999999876432    13688999999999999999998873    37999


Q ss_pred             ccCCCCCCCcccccccCCCCccccCcccccccc------ccCCccccccccCCCCceecCceEEEecCCcEEEEccCCce
Q psy12107        215 GYGMTETSPCTLYTRFAIPEAKLGSTGQLVMLG------YLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKEL  288 (334)
Q Consensus       215 ~YG~tE~g~~~~~~~~~~~~~~~~~~G~~~~~g------y~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~  288 (334)
                      .||+||++.+......    ...+.+|+++...      ..+.+....-. ..++||+|||++++++||+++++||.+|+
T Consensus       242 ~YG~tE~~~~~~~~~~----~~~~~~G~p~~~~~~~~~~~~~~~gel~v~-~~~~~~~TGDl~~~~~dg~l~~~GR~~~~  316 (414)
T PRK08308        242 QYGCSEAGCVSICPDM----KSHLDLGNPLPHVSVSAGSDENAPEEIVVK-MGDKEIFTKDLGYKSERGTLHFMGRMDDV  316 (414)
T ss_pred             ccCccccCCeeecCCC----CCCCccCccCCCeEEEEecCCCCCceEEEE-cCCceEECCceEEECCCccEEEecccCCe
Confidence            9999999864432211    1345566653211      11111111111 24689999999999999999999999999


Q ss_pred             EEEcCEEee-------------------------------------------------------eeeeccCcEEEeecCC
Q psy12107        289 IKVKGNQVA-------------------------------------------------------PYKKLAGGVKFLETIP  313 (334)
Q Consensus       289 i~~~G~~i~-------------------------------------------------------~~~~~~~~i~~v~~lP  313 (334)
                      ||++|++|+                                                       ++++|.. ++++++||
T Consensus       317 ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~l~~~l~~~~~P~~-i~~v~~iP  395 (414)
T PRK08308        317 INVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHEEIDPVQLREWCIQHLAPYQVPHE-IESVTEIP  395 (414)
T ss_pred             EEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCCCCHHHHHHHHHHhCccccCCcE-EEEeccCC
Confidence            999999999                                                       5556666 99999999


Q ss_pred             CCCCchhhHHHHh
Q psy12107        314 RNPAGKVLRNELK  326 (334)
Q Consensus       314 ~t~~GKi~r~~l~  326 (334)
                      +|++||++|+.|+
T Consensus       396 ~t~~GKi~r~~~~  408 (414)
T PRK08308        396 KNANGKVSRKLLE  408 (414)
T ss_pred             CCCCcCeehhhhh
Confidence            9999999999443

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=100.00  E-value=4.8e-39  Score=295.66  Aligned_cols=252  Identities=28%  Similarity=0.444  Sum_probs=205.0

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      .....+++++++|||||||.||+|.++|+++..+.......+       ...++|++++..|++|.+++.. ++.++..|
T Consensus       106 ~~~~~~~~~~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~~~~~-~~~~l~~g  177 (436)
T TIGR01923       106 ASFNMDQIATLMFTSGTTGKPKAVPHTFRNHYASAVGSKENL-------GFTEDDNWLLSLPLYHISGLSI-LFRWLIEG  177 (436)
T ss_pred             ccCCcCceEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHhhc-------CCCCCceEEEccCcHhHHHHHH-HHHHHhcC
Confidence            345678999999999999999999999999988776655543       2668899999999999998865 78889999


Q ss_pred             cEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCcee
Q psy12107        134 MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR  213 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~  213 (334)
                      +++++.+.+  ..+++.|+++++|++.++|+++..|++.....    +++|.++++|+++++++.+.+.+ ++   +.++
T Consensus       178 ~~~~~~~~~--~~~~~~l~~~~~t~~~~~P~~l~~l~~~~~~~----~~l~~~~~~G~~~~~~~~~~~~~-~~---~~~~  247 (436)
T TIGR01923       178 ATLRIVDKF--NQLLEMIANERVTHISLVPTQLNRLLDEGGHN----ENLRKILLGGSAIPAPLIEEAQQ-YG---LPIY  247 (436)
T ss_pred             ceEEecchH--HHHHHHHHHhCCeEEEeHHHHHHHHHhCcCCC----CceEEEEECCCCCCHHHHHHHHH-hC---Ccee
Confidence            999998755  49999999999999999999999998865422    68999999999999999998875 44   4799


Q ss_pred             eccCCCCCCCcccccccCCCC-------------c-----cccCccc------cccccccCCccccccccCCCCceecCc
Q psy12107        214 QGYGMTETSPCTLYTRFAIPE-------------A-----KLGSTGQ------LVMLGYLKNEEATKETVDSEGWLHTGD  269 (334)
Q Consensus       214 ~~YG~tE~g~~~~~~~~~~~~-------------~-----~~~~~G~------~~~~gy~~~~~~~~~~~~~~~~~~TGD  269 (334)
                      +.||+||++............             .     ..+..|+      .++.||+++++.+...+ .++||+|||
T Consensus       248 ~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~-~~~~~~TGD  326 (436)
T TIGR01923       248 LSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNKEGHGEIMVKGANLMKGYLYQGELTPAFE-QQGWFNTGD  326 (436)
T ss_pred             eEecCCccchhccCcCccccccccCCCccCCCcEEEEEeCCCCCceEEEEECCccchhhCCChhhhhhhh-cCCCeeccc
Confidence            999999998644322111000             0     0011233      36789999877766554 579999999


Q ss_pred             eEEEecCCcEEEEccCCceEEEcCEEee----------------------------------------------------
Q psy12107        270 VAYYDEDGYFYIVDRTKELIKVKGNQVA----------------------------------------------------  297 (334)
Q Consensus       270 ~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------------------------------------------------  297 (334)
                      ++++++||.+++.||.+|+||.+|++|+                                                    
T Consensus       327 ~~~~~~dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~l~~  406 (436)
T TIGR01923       327 IGELDGEGFLYVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESDISQAKLIAYLTE  406 (436)
T ss_pred             eEEEcCCCCEEEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999                                                    


Q ss_pred             ---eeeeccCcEEEeecCCCCCCchhhHHHH
Q psy12107        298 ---PYKKLAGGVKFLETIPRNPAGKVLRNEL  325 (334)
Q Consensus       298 ---~~~~~~~~i~~v~~lP~t~~GKi~r~~l  325 (334)
                         +++.|.. ++++++||+|++||++|++|
T Consensus       407 ~l~~~~~p~~-i~~~~~iP~t~~GK~~r~~L  436 (436)
T TIGR01923       407 KLAKYKVPIA-FEKLDELPYNASGKILRNQL  436 (436)
T ss_pred             hhhCCCCCeE-EEEecCCCCCCCCceecccC
Confidence               3455665 99999999999999999875

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=8.2e-39  Score=299.74  Aligned_cols=262  Identities=23%  Similarity=0.336  Sum_probs=209.3

Q ss_pred             CCCCCEEEEecCCCCCCCchhhhhcchHHHHH---hhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHh
Q psy12107         56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVN---LEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMY  132 (334)
Q Consensus        56 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  132 (334)
                      ..++++++++|||||||.||+|+++|.+....   .......+       ...++++++..+|++|..+.... +.++..
T Consensus       149 ~~~~~~a~i~~TSGtTG~PK~v~~s~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~p~~~~~~~~~~-~~~~~~  220 (509)
T PRK12406        149 PPVPQPQSMIYTSGTTGHPKGVRRAAPTPEQAAAAEQMRALIY-------GLKPGIRALLTGPLYHSAPNAYG-LRAGRL  220 (509)
T ss_pred             CCCCCceEEEECCCCCCCCceEEEechhHHHHHHHHHhhhhhc-------CCCCCceEEEEeCCcccchHHHH-HHHHhh
Confidence            35689999999999999999999876654322   22222222       25678899999999998887664 556788


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCC--CCccccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107        133 GMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPA--VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI  210 (334)
Q Consensus       133 G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~  210 (334)
                      |+++++.+.+++..+++.++++++|++.++|+++..|++...  ....+++++|.+++||+++++++.+++.+.++.   
T Consensus       221 g~~~~~~~~~~~~~~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~---  297 (509)
T PRK12406        221 GGVLVLQPRFDPEELLQLIERHRITHMHMVPTMFIRLLKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEWWGP---  297 (509)
T ss_pred             heEEEEccCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCchhhcccCCCCceeEEEEcCCCCCHHHHHHHHHHcCC---
Confidence            999988888899999999999999999999999999987543  233567899999999999999999999998864   


Q ss_pred             ceeeccCCCCCCCcccccccCC-----------------------CCccccCccccc------c-ccccCCccccccccC
Q psy12107        211 TIRQGYGMTETSPCTLYTRFAI-----------------------PEAKLGSTGQLV------M-LGYLKNEEATKETVD  260 (334)
Q Consensus       211 ~i~~~YG~tE~g~~~~~~~~~~-----------------------~~~~~~~~G~~~------~-~gy~~~~~~~~~~~~  260 (334)
                      .+++.||+||++.+++......                       .....+..|+++      + .+|+++++.+...+ 
T Consensus       298 ~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~-  376 (509)
T PRK12406        298 VIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEID-  376 (509)
T ss_pred             cEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEECCCCCCCCCCCceEEEEECCccccccccCCchhccccc-
Confidence            7999999999987554332110                       011223344442      2 37888888777665 


Q ss_pred             CCCceecCceEEEecCCcEEEEccCCceEEEcCEEee-------------------------------------------
Q psy12107        261 SEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-------------------------------------------  297 (334)
Q Consensus       261 ~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-------------------------------------------  297 (334)
                      .++||+|||++++++||.+++.||.+|+||.+|.+|+                                           
T Consensus       377 ~~~~~~TGD~~~~~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~  456 (509)
T PRK12406        377 RGGFITSGDVGYLDADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATL  456 (509)
T ss_pred             CCCCeEEccEEEEcCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCC
Confidence            7899999999999999999999999999999999998                                           


Q ss_pred             --------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhc
Q psy12107        298 --------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGT  330 (334)
Q Consensus       298 --------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~  330 (334)
                                    +++.|.. +.++++||+|++||++|++|++.+.
T Consensus       457 ~~~~l~~~l~~~l~~~~~P~~-i~~~~~iP~t~~GK~~r~~L~~~~~  502 (509)
T PRK12406        457 DEADIRAQLKARLAGYKVPKH-IEIMAELPREDSGKIFKRRLRDPYW  502 (509)
T ss_pred             CHHHHHHHHHHhcccCCCCcE-EEEeccCCCCCccchhHHHHHHHHH
Confidence                          4445666 9999999999999999999998764

>PRK05691 peptide synthase; Validated

Probab=100.00  E-value=1.4e-39  Score=360.41  Aligned_cols=261  Identities=25%  Similarity=0.341  Sum_probs=219.2

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...+++++|++|||||||.||||+++|+++.+.+......+       ...+.++++...|+.|..++.. ++.++..|+
T Consensus      1269 ~~~~~~~a~ii~TSGSTG~PKgV~~~h~~l~~~~~~~~~~~-------~~~~~d~~l~~~~~~fd~s~~~-~~~~L~~G~ 1340 (4334)
T PRK05691       1269 HLHGDNLAYVIYTSGSTGQPKGVGNTHAALAERLQWMQATY-------ALDDSDVLMQKAPISFDVSVWE-CFWPLITGC 1340 (4334)
T ss_pred             CCCCCCeEEEEEcCCCCCCCceeEeecHHHHHHHHHHHHhc-------CCCCCCEEEEeCCccHHHHHHH-HHHHHhCCC
Confidence            45679999999999999999999999999988776655544       2678899999999988888765 788999999


Q ss_pred             EEEEcC---CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107        135 HMITIP---KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT  211 (334)
Q Consensus       135 ~~~~~~---~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~  211 (334)
                      ++++.+   ..++..+++.|+++++|++.++|+++..|.+...  ...+++||.+++|||++++++.++|.+.++  +++
T Consensus      1341 ~l~i~~~~~~~~~~~l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~--~~~ 1416 (4334)
T PRK05691       1341 RLVLAGPGEHRDPQRIAELVQQYGVTTLHFVPPLLQLFIDEPL--AAACTSLRRLFSGGEALPAELRNRVLQRLP--QVQ 1416 (4334)
T ss_pred             EEEEcCccccCCHHHHHHHHHHcCCeEEECcHHHHHHHHhCcc--cccCCcccEEEEeecCCCHHHHHHHHHhCC--CcE
Confidence            999875   3689999999999999999999999999986532  346789999999999999999999999987  678


Q ss_pred             eeeccCCCCCCCcccccccCC------------------------CCccccCcccc------ccccccCCccccccccCC
Q psy12107        212 IRQGYGMTETSPCTLYTRFAI------------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDS  261 (334)
Q Consensus       212 i~~~YG~tE~g~~~~~~~~~~------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~  261 (334)
                      ++|.||+||++..++......                        .....|..|++      +++||+++|+.|.+.|..
T Consensus      1417 l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~ 1496 (4334)
T PRK05691       1417 LHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVP 1496 (4334)
T ss_pred             EEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEECCCCCCCCCCCceEEEecCcccchhhcCCccccHhhCCC
Confidence            999999999886443211100                        01123344444      789999999999998843


Q ss_pred             -------CCceecCceEEEecCCcEEEEccCCceEEEcCEEee-------------------------------------
Q psy12107        262 -------EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-------------------------------------  297 (334)
Q Consensus       262 -------~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-------------------------------------  297 (334)
                             .+||+|||+|++++||.++++||.||+||++|++|+                                     
T Consensus      1497 ~p~~~~~~r~yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~~~~~lva~~~~~ 1576 (4334)
T PRK05691       1497 DPLGEDGARLYRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGAAGAQLVGYYTGE 1576 (4334)
T ss_pred             CCCCCCCceEEEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCCCCCEEEEEEEeC
Confidence                   359999999999999999999999999999999999                                     


Q ss_pred             -------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhh
Q psy12107        298 -------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVF  328 (334)
Q Consensus       298 -------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~  328 (334)
                                         .|++|.. +.++++||+|++|||+|++|++.
T Consensus      1577 ~~~~~~~~~l~~~l~~~Lp~y~vP~~-~~~~~~lP~t~~GKidr~~L~~~ 1625 (4334)
T PRK05691       1577 AGQEAEAERLKAALAAELPEYMVPAQ-LIRLDQMPLGPSGKLDRRALPEP 1625 (4334)
T ss_pred             CCCCCCHHHHHHHHHHhCccccCCcE-EEEccccCCCCCCCcChhhcCcc
Confidence                               5556666 99999999999999999999764

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=100.00  E-value=1.1e-38  Score=295.03  Aligned_cols=254  Identities=23%  Similarity=0.304  Sum_probs=205.0

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++++|||||||.||+|.++|+++..+.......+       ....+++++...|++|.+++.. ++.++..|+
T Consensus       131 ~~~~~~~a~i~~TSGTTG~PKgv~~s~~~~~~~~~~~~~~~-------~~~~~~~~l~~~p~~h~~g~~~-~~~~l~~G~  202 (458)
T PRK09029        131 AWQPQRLATMTLTSGSTGLPKAAVHTAQAHLASAEGVLSLM-------PFTAQDSWLLSLPLFHVSGQGI-VWRWLYAGA  202 (458)
T ss_pred             cCCCCCeEEEEECCCCCCCCCEEEEeHHHHHHHHHHHhhcC-------CCCccceEEEecCcHhhhhhHH-HHHHHhCCc
Confidence            45678999999999999999999999999998876654443       2567889999999999999865 677889999


Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceee
Q psy12107        135 HMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ  214 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~  214 (334)
                      ++++.+.   ..+++.++  +++.+..+|+++..|......    ..++|.+++||+++++.+.+.+.+. +   +++++
T Consensus       203 ~v~~~~~---~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~----~~~l~~i~~gG~~~~~~~~~~~~~~-g---~~~~~  269 (458)
T PRK09029        203 TLVVRDK---QPLEQALA--GCTHASLVPTQLWRLLDNRSE----PLSLKAVLLGGAAIPVELTEQAEQQ-G---IRCWC  269 (458)
T ss_pred             eEEeCCh---HHHHHHHh--hceeeecChHHHHHHHhcccc----CCcceEEEECCCCCCHHHHHHHHHc-C---CcEec
Confidence            9988764   55667774  799999999999998876432    3479999999999999999998764 4   47999


Q ss_pred             ccCCCCCCCcccccccCCC--C-------------ccccCccccccccccCCccccccccCCCCceecCceEEEecCCcE
Q psy12107        215 GYGMTETSPCTLYTRFAIP--E-------------AKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYF  279 (334)
Q Consensus       215 ~YG~tE~g~~~~~~~~~~~--~-------------~~~~~~G~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~  279 (334)
                      .||+||++...........  -             +.....|..++.||+++++.+.... .++||+|||+|+++ ||.+
T Consensus       270 ~YG~tE~~~~~~~~~~~~~~~~G~~~~~~~~~i~~gel~v~g~~~~~gY~~~~~~~~~~~-~~~~~~TGD~~~~~-~g~l  347 (458)
T PRK09029        270 GYGLTEMASTVCAKRADGLAGVGSPLPGREVKLVDGEIWLRGASLALGYWRQGQLVPLVN-DEGWFATRDRGEWQ-NGEL  347 (458)
T ss_pred             cccccccCcceeccCCCCCCCCCCCCCCCEEEEeCCEEEEecCceeeeeecCcccccccc-CCCccCCCCcEEEe-CCEE
Confidence            9999999865443221110  0             0011123347899999988776544 58999999999999 9999


Q ss_pred             EEEccCCceEEEcCEEee-------------------------------------------------------eeeeccC
Q psy12107        280 YIVDRTKELIKVKGNQVA-------------------------------------------------------PYKKLAG  304 (334)
Q Consensus       280 ~~~GR~~d~i~~~G~~i~-------------------------------------------------------~~~~~~~  304 (334)
                      ++.||.+|+||.+|.+|+                                                       +++.|..
T Consensus       348 ~~~gR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~l~~~~~~~l~~~~~P~~  427 (458)
T PRK09029        348 TILGRLDNLFFSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAAVVNLAEWLQDKLARFQQPVA  427 (458)
T ss_pred             EEecccccceeeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCcccCHHHHHHHHHhhchhccCCeE
Confidence            999999999999999999                                                       5566666


Q ss_pred             cEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        305 GVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       305 ~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                       +++++++|+|++||++|+.|+++.++.
T Consensus       428 -~~~~~~~p~t~~gKi~r~~L~~~~~~~  454 (458)
T PRK09029        428 -YYLLPPELKNGGIKISRQALKEWVAQQ  454 (458)
T ss_pred             -EEEecccccCcCCCcCHHHHHHHHHhc
Confidence             999999999999999999999998764

>PRK12582 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4.1e-39  Score=308.27  Aligned_cols=238  Identities=26%  Similarity=0.366  Sum_probs=183.7

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++|+++|+|||||||.||||+++|+++..+...........    .....++++..+|++|.+++...++.++..|+
T Consensus       216 ~~~~~d~a~i~yTSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~----~~~~~~~~l~~lPl~h~~g~~~~~~~~l~~G~  291 (624)
T PRK12582        216 AITPDTVAKYLFTSGSTGMPKAVINTQRMMCANIAMQEQLRPRE----PDPPPPVSLDWMPWNHTMGGNANFNGLLWGGG  291 (624)
T ss_pred             cCCCCceEEEEEcCCCCCCCceEEeeHHHHHHHHHHHHHhcccc----CCCCCceEEEechHHHHHhHHHHHHHHHhCce
Confidence            35678999999999999999999999999987765443322100    01135789999999999998776778889999


Q ss_pred             EEEEcCC-CCH---HHHHHHHHHcCCeEEeechHHHHHHhcCCCC----CccccccceeeeecCCCCCHHHHHHHHHHh-
Q psy12107        135 HMITIPK-FTP---ETYIECVVKYKPTILFVVPSLLLFLASHPAV----TPEHLASIREVTCGAAPATKSLIDKFKQKV-  205 (334)
Q Consensus       135 ~~~~~~~-~~~---~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~----~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~-  205 (334)
                      ++++.+. +++   ..+++.++++++|+++++|+++..|++....    ...++++||.+++||+++++++.+++.+.+ 
T Consensus       292 tvvl~~~~~~~~~~~~~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~  371 (624)
T PRK12582        292 TLYIDDGKPLPGMFEETIRNLREISPTVYGNVPAGYAMLAEAMEKDDALRRSFFKNLRLMAYGGATLSDDLYERMQALAV  371 (624)
T ss_pred             EEEEcCCCcccchHHHHHHHHHhcCCeEEeccCHHHHHHHHHHhhCHHHHHHHhhheeEEEecCCCCCHHHHHHHHHHHH
Confidence            9988753 333   4567788999999999999999988754321    123578999999999999999999998863 


Q ss_pred             ---ccCCCceeeccCCCCCCCcccccccCCC------------C---ccccCcccc------ccccccCCccccccccCC
Q psy12107        206 ---QREDITIRQGYGMTETSPCTLYTRFAIP------------E---AKLGSTGQL------VMLGYLKNEEATKETVDS  261 (334)
Q Consensus       206 ---~~~~~~i~~~YG~tE~g~~~~~~~~~~~------------~---~~~~~~G~~------~~~gy~~~~~~~~~~~~~  261 (334)
                         +. ++++++.||+||++.+.........            +   ...|..|++      ++.|||++|+.+.+.|+.
T Consensus       372 ~~~g~-~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~  450 (624)
T PRK12582        372 RTTGH-RIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAPVGDKYEVRVKGPNVTPGYHKDPELTAAAFDE  450 (624)
T ss_pred             hhcCC-CceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEccCCCceEEEEECCcccccccCCccchhhhcCc
Confidence               32 4579999999999875542111100            0   011223333      688999999999999988


Q ss_pred             CCceecCceEEE-e---cCCcEEEEccCCceEEE-cCEEee
Q psy12107        262 EGWLHTGDVAYY-D---EDGYFYIVDRTKELIKV-KGNQVA  297 (334)
Q Consensus       262 ~~~~~TGD~~~~-~---~dg~~~~~GR~~d~i~~-~G~~i~  297 (334)
                      +|||+|||+|++ |   ++|+++++||.||+|++ +|++|+
T Consensus       451 dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~  491 (624)
T PRK12582        451 EGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVS  491 (624)
T ss_pred             cCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEec
Confidence            999999999998 4   56999999999999997 699988

>PRK08162 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3.7e-38  Score=297.72  Aligned_cols=312  Identities=26%  Similarity=0.391  Sum_probs=220.8

Q ss_pred             cchhhHHHHHHhhhCCCCceEEEEcCCCCC-----CCCccchhhhhcCCCCCCC-CCCCCCCCEEEEecCCCCCCCchhh
Q psy12107          4 IPQLLEVGTKIGATLPNFRGTIVVGGEHDK-----SKNIFGFKQLVTSQPPDFQ-LPKISPNDLAMLPYSSGTTGVPKGV   77 (334)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~-----~~~~~~~~~ll~~~~~~~~-~~~~~~~~~a~i~~TSGTTG~PK~v   77 (334)
                      +++..+.+.++...++..+. ++++.....     ..+..++++++....+... ....+.+++++++|||||||.||+|
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~TSGTTG~PKgv  200 (545)
T PRK08162        122 DTEFAEVAREALALLPGPKP-LVIDVDDPEYPGGRFIGALDYEAFLASGDPDFAWTLPADEWDAIALNYTSGTTGNPKGV  200 (545)
T ss_pred             ccchhhHHHHHHhhCCCCce-EEEecCccccccCCCcccccHHHHhccCCccccccCCCCCCCeEEEEeCCCCCCCCcEE
Confidence            34445555555555554333 333322110     0123456666632222211 1123456899999999999999999


Q ss_pred             hhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCe
Q psy12107         78 KLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPT  157 (334)
Q Consensus        78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t  157 (334)
                      +++|+++..+.......+       .....+++++.+|++|.+++...++..+ .|++.+....+++..+++.|+++++|
T Consensus       201 ~~t~~~~~~~~~~~~~~~-------~~~~~~~~l~~~pl~h~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~l~~~~~t  272 (545)
T PRK08162        201 VYHHRGAYLNALSNILAW-------GMPKHPVYLWTLPMFHCNGWCFPWTVAA-RAGTNVCLRKVDPKLIFDLIREHGVT  272 (545)
T ss_pred             EEecHHHHHHHHHHHHhc-------CCCCCCeeEeccCcHhhhhHHHHHHHHH-HccEEEEeCCCCHHHHHHHHHHcCCe
Confidence            999998765544332222       2456788999999999999876544444 45555555678999999999999999


Q ss_pred             EEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCccccccc-------
Q psy12107        158 ILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF-------  230 (334)
Q Consensus       158 ~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~-------  230 (334)
                      ++.++|+++..|++........+...+.++++|+++++++.+.+++. +   +++++.||+||+++.+..+..       
T Consensus       273 ~~~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~---~~~~~~YG~tE~~~~~~~~~~~~~~~~~  348 (545)
T PRK08162        273 HYCGAPIVLSALINAPAEWRAGIDHPVHAMVAGAAPPAAVIAKMEEI-G---FDLTHVYGLTETYGPATVCAWQPEWDAL  348 (545)
T ss_pred             EEEechHHHHHHHhCccccccCCccceEEEECCCCCCHHHHHHHHHh-C---CceeecccccccCcceeecccccccccC
Confidence            99999999999987654333345566777899999999999988764 4   489999999998543222100       


Q ss_pred             ------------C----------------CCCccc-c-Ccccc------ccccccCCccccccccCCCCceecCceEEEe
Q psy12107        231 ------------A----------------IPEAKL-G-STGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYD  274 (334)
Q Consensus       231 ------------~----------------~~~~~~-~-~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~  274 (334)
                                  +                ..+... + ..|++      ++.||+++++.+...| .++||+|||++++|
T Consensus       349 ~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~-~~g~~~TGDl~~~d  427 (545)
T PRK08162        349 PLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAF-AGGWFHTGDLAVLH  427 (545)
T ss_pred             CccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHh-hCCCcccCceEEEc
Confidence                        0                000000 1 12444      6779999999999888 58999999999999


Q ss_pred             cCCcEEEEccCCceEEEcCEEee---------------------------------------------------------
Q psy12107        275 EDGYFYIVDRTKELIKVKGNQVA---------------------------------------------------------  297 (334)
Q Consensus       275 ~dg~~~~~GR~~d~i~~~G~~i~---------------------------------------------------------  297 (334)
                      +||.++++||.+|++|.+|++|+                                                         
T Consensus       428 ~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~  507 (545)
T PRK08162        428 PDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEEEIIAHCREHLA  507 (545)
T ss_pred             CCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCCHHHHHHHHHHhcc
Confidence            99999999999999999999999                                                         


Q ss_pred             eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 ~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                      +++.|.. +.+ ++||+|++||++|+.|++.+.+
T Consensus       508 ~~~~P~~-~~~-~~iP~t~~gK~~r~~l~~~~~~  539 (545)
T PRK08162        508 GFKVPKA-VVF-GELPKTSTGKIQKFVLREQAKS  539 (545)
T ss_pred             cccCCcE-EEe-cccCCCCCcCCcHHHHHHHHhh
Confidence            4444554 554 6899999999999999998654

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.7e-39  Score=302.47  Aligned_cols=257  Identities=25%  Similarity=0.391  Sum_probs=202.0

Q ss_pred             CCEEEEecCCCCCCCchhhhh--cchHHHHHhh---hhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         59 NDLAMLPYSSGTTGVPKGVKL--SHNNCAVNLE---QCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        59 ~~~a~i~~TSGTTG~PK~v~~--t~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      .++++|+|||||||.||+|++  +|.++..+..   ......      ......+++++.+|++|.+++... +..+..|
T Consensus       148 ~~~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~p~~h~~~~~~~-~~~~~~g  220 (501)
T PRK13390        148 PCGAVMLYSSGTTGFPKGIQPDLPGRDVDAPGDPIVAIARAF------YDISESDIYYSSAPIYHAAPLRWC-SMVHALG  220 (501)
T ss_pred             cccEEEEeCCCCCCCCCEEEeeccccccccchhhhHhhHHHH------hCCCCCCeEEecccchhhhHHHHH-HHHHhcC
Confidence            357999999999999999995  4555433211   110100      025678999999999999887653 4456789


Q ss_pred             cEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCC--CccccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107        134 MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV--TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT  211 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~--~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~  211 (334)
                      +++++.+.+++..+++.|+++++|++.++|+++..|.+....  ...+++++|.+++||+++++++.+.+.+.++.   +
T Consensus       221 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~---~  297 (501)
T PRK13390        221 GTVVLAKRFDAQATLGHVERYRITVTQMVPTMFVRLLKLDADVRTRYDVSSLRAVIHAAAPCPVDVKHAMIDWLGP---I  297 (501)
T ss_pred             ceEEEcCCcCHHHHHHHHHHcCCeEEEecHHHHHHHHhccchhcccCChhhhheEEEcCCCCCHHHHHHHHHhcCC---c
Confidence            999998889999999999999999999999999998865432  23467799999999999999999999998864   7


Q ss_pred             eeeccCCCCCCCcccccccC----------------------CCCccccCcccc------ccccccCCccccccccCC--
Q psy12107        212 IRQGYGMTETSPCTLYTRFA----------------------IPEAKLGSTGQL------VMLGYLKNEEATKETVDS--  261 (334)
Q Consensus       212 i~~~YG~tE~g~~~~~~~~~----------------------~~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~--  261 (334)
                      +++.||+||++.++......                      ......+..|++      ++.||+++++.+...+.+  
T Consensus       298 ~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~  377 (501)
T PRK13390        298 VYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLGDLHICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAH  377 (501)
T ss_pred             eeeeecccccCceEEecchhhccCCCCcCCcccceEEEECCCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCC
Confidence            99999999997643321110                      001123344444      577999999999887743  


Q ss_pred             CCceecCceEEEecCCcEEEEccCCceEEEcCEEee--------------------------------------------
Q psy12107        262 EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA--------------------------------------------  297 (334)
Q Consensus       262 ~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~--------------------------------------------  297 (334)
                      ++||+|||++++++||.+++.||.||+||.+|++|+                                            
T Consensus       378 ~~w~~tGDl~~~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~  457 (501)
T PRK13390        378 PFWTTVGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGS  457 (501)
T ss_pred             CceEEcCceEEECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcc
Confidence            679999999999999999999999999999999998                                            


Q ss_pred             ----------------eeeeccCcEEEeecCCCCCCchhhHHHHh
Q psy12107        298 ----------------PYKKLAGGVKFLETIPRNPAGKVLRNELK  326 (334)
Q Consensus       298 ----------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~  326 (334)
                                      +++.|.. ++++++||+|++||++|++||
T Consensus       458 ~~~~~~l~~~~~~~l~~~~~P~~-~~~~~~iP~t~~GKi~r~~L~  501 (501)
T PRK13390        458 DELARELIDYTRSRIAHYKAPRS-VEFVDELPRTPTGKLVKGLLR  501 (501)
T ss_pred             hhhHHHHHHHHHHhcccCCCCcE-EEEeccCCCCCccceehhhcC
Confidence                            3335555 999999999999999999985

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2e-38  Score=300.46  Aligned_cols=267  Identities=32%  Similarity=0.523  Sum_probs=215.2

Q ss_pred             CCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcE
Q psy12107         56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMH  135 (334)
Q Consensus        56 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~  135 (334)
                      ..++++++++|||||||.||+|.++|+++..+.......+...    .....+.++..+|++|.+++....+..+..|++
T Consensus       203 ~~~~~~a~i~~TSGtTG~PK~v~~t~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~g~~  278 (560)
T PRK08974        203 LVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQAKAAYGPL----LHPGKELVVTALPLYHIFALTVNCLLFIELGGQ  278 (560)
T ss_pred             CCCCCeEEEEECCCCCCCCcEEEEchHHHHHHHHHHHHhhccc----cCCCccEEEEeCcHHHHHHHHHHHHHHhhcCCe
Confidence            5678999999999999999999999999987665433222110    123467788999999999877666777778887


Q ss_pred             EEEcC-CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceee
Q psy12107        136 MITIP-KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ  214 (334)
Q Consensus       136 ~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~  214 (334)
                      +++.. ..++..+++.++++++|.+.++|+++..|.+........++++|.+++||+++++.+.+.|++.++.   ++++
T Consensus       279 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~---~~~~  355 (560)
T PRK08974        279 NLLITNPRDIPGFVKELKKYPFTAITGVNTLFNALLNNEEFQELDFSSLKLSVGGGMAVQQAVAERWVKLTGQ---YLLE  355 (560)
T ss_pred             EEEecCccCHHHHHHHHHhcCcceEcCcHHHHHHHHhCcCcccCCccceeEEEecCccCCHHHHHHHHHHhCC---cEEe
Confidence            66653 4688999999999999999999999999988765555677899999999999999999999998864   7999


Q ss_pred             ccCCCCCCCcccccccCC-----------------------CCccccCcccc------ccccccCCccccccccCCCCce
Q psy12107        215 GYGMTETSPCTLYTRFAI-----------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWL  265 (334)
Q Consensus       215 ~YG~tE~g~~~~~~~~~~-----------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~  265 (334)
                      .||+||++.+++.+....                       .+...+..|++      ++.||+++++.+...+ .+|||
T Consensus       356 ~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~  434 (560)
T PRK08974        356 GYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVI-KDGWL  434 (560)
T ss_pred             eecccccCceeeccCCCCcccCCccccCcCCCEEEEECCCCCCCCCCCceEEEEecCCcchhhcCChhhhhhhh-hcCCc
Confidence            999999986554332110                       01112333443      6788999999888888 68999


Q ss_pred             ecCceEEEecCCcEEEEccCCceEEEcCEEee------------------------------------------------
Q psy12107        266 HTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA------------------------------------------------  297 (334)
Q Consensus       266 ~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~------------------------------------------------  297 (334)
                      +|||+++++++|.++++||.+|+|+++|.+|+                                                
T Consensus       435 ~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~l~  514 (560)
T PRK08974        435 ATGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKDPSLTEEELI  514 (560)
T ss_pred             ccCCEEEEcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCCCCCCHHHHH
Confidence            99999999999999999999999999999998                                                


Q ss_pred             --------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 --------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 --------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                              +++.|.. +.++++||+|++||++|++|++....
T Consensus       515 ~~l~~~l~~~~~P~~-~~~~~~lP~t~~GK~~r~~l~~~~~~  555 (560)
T PRK08974        515 THCRRHLTGYKVPKL-VEFRDELPKSNVGKILRRELRDEARA  555 (560)
T ss_pred             HHHHhhcccccCCcE-EEEhhhCCCCCCCcEeHHHHHHHHHh
Confidence                    3334555 88899999999999999999998643

>PRK13383 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=4e-38  Score=295.52  Aligned_cols=255  Identities=25%  Similarity=0.372  Sum_probs=200.1

Q ss_pred             CCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEE
Q psy12107         58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMI  137 (334)
Q Consensus        58 ~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~  137 (334)
                      .++.++++|||||||.||+|+++|.... ...........    .....+++++..+|++|.+++.. ++.++..|++++
T Consensus       173 ~~~~~~il~TSGTTG~PK~v~~s~~~~~-~~~~~~~~~~~----~~~~~~d~~~~~~pl~h~~g~~~-~~~~l~~G~~~~  246 (516)
T PRK13383        173 AAPGRIVLLTSGTTGKPKGVPRAPQLRS-AVGVWVTILDR----TRLRTGSRISVAMPMFHGLGLGM-LMLTIALGGTVL  246 (516)
T ss_pred             CCCCcEEEECCCCCCCCCeeeecchhhh-hhhhHHhHHhh----hccCCCCeEEEecCCcchhhHHH-HHHHHhcCCEEE
Confidence            4567899999999999999999997432 11111110000    02567889999999999999876 677888999999


Q ss_pred             EcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCC--CccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeec
Q psy12107        138 TIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV--TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQG  215 (334)
Q Consensus       138 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~--~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~  215 (334)
                      ....++++.+++.++++++|.+.++|+++..|.+....  ....++++|.+++||+++++++++++.+.|+.   .+++.
T Consensus       247 ~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~---~v~~~  323 (516)
T PRK13383        247 THRHFDAEAALAQASLHRADAFTAVPVVLARILELPPRVRARNPLPQLRVVMSSGDRLDPTLGQRFMDTYGD---ILYNG  323 (516)
T ss_pred             ECCCCCHHHHHHHHHHhCCcEEEecHHHHHHHHhccccccccCCCCceEEEEECCCCCCHHHHHHHHHHcCc---hhhhc
Confidence            98889999999999999999999999999999875432  23457899999999999999999999999975   69999


Q ss_pred             cCCCCCCCcccccccCC-----------------------CCccccCcccc------ccccccCCccccccccCCCCcee
Q psy12107        216 YGMTETSPCTLYTRFAI-----------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLH  266 (334)
Q Consensus       216 YG~tE~g~~~~~~~~~~-----------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~  266 (334)
                      ||+||++.....+....                       .+...+..|++      ++.+|++++.   ..+ .+|||+
T Consensus       324 YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~---~~~-~~g~~~  399 (516)
T PRK13383        324 YGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRVTGRIFVGGELAGTRYTDGGG---KAV-VDGMTS  399 (516)
T ss_pred             ccccccccceeccccccccCCCcccCCCCCcEEEEECCCCCCCCCCCceEEEEecCcccccccCCch---hhe-ecCcee
Confidence            99999986443221100                       01112333443      5678887654   222 479999


Q ss_pred             cCceEEEecCCcEEEEccCCceEEEcCEEee-------------------------------------------------
Q psy12107        267 TGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-------------------------------------------------  297 (334)
Q Consensus       267 TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-------------------------------------------------  297 (334)
                      |||++++|++|++++.||.+|+||++|++|+                                                 
T Consensus       400 TGDl~~~d~~G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~~~l~  479 (516)
T PRK13383        400 TGDMGYLDNAGRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLR  479 (516)
T ss_pred             cceeEEEcCCccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHH
Confidence            9999999999999999999999999999998                                                 


Q ss_pred             --------eeeeccCcEEEeecCCCCCCchhhHHHHh
Q psy12107        298 --------PYKKLAGGVKFLETIPRNPAGKVLRNELK  326 (334)
Q Consensus       298 --------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~  326 (334)
                              +++.|.. |+++++||+|++||++|++|+
T Consensus       480 ~~~~~~l~~~~~p~~-i~~v~~iP~t~~gKi~r~~L~  515 (516)
T PRK13383        480 DYLKDRVSRFEQPRD-INIVSSIPRNPTGKVLRKELP  515 (516)
T ss_pred             HHHHHhcccCCCCcE-EEEeCCCCCCCCCcCcHHHhC
Confidence                    4455555 999999999999999999884

>PRK09192 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4e-38  Score=299.30  Aligned_cols=268  Identities=25%  Similarity=0.461  Sum_probs=208.3

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhcc-CccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVH-PDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ...++++++++|||||||.||+|.++|+++..+...... .+       ...+.|+++..+|++|.+++...++.++..|
T Consensus       172 ~~~~~~~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~-------~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g  244 (579)
T PRK09192        172 RPTPDDIAYLQYSSGSTRFPRGVIITHRALMANLRAISHDGL-------KVRPGDRCVSWLPFYHDMGLVGFLLTPVATQ  244 (579)
T ss_pred             CCCCCCeEEEEecCCCCCCCceEEeeHHHHHHHHHHHHhhcc-------cCCCCCeEEEeCCCCCcchhHHHHHHHHHhC
Confidence            456789999999999999999999999999887765554 22       2567899999999999999987778888899


Q ss_pred             cEEEEcCC----CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCC---CCccccccceeeeecCCCCCHHHHHHHHHHhc
Q psy12107        134 MHMITIPK----FTPETYIECVVKYKPTILFVVPSLLLFLASHPA---VTPEHLASIREVTCGAAPATKSLIDKFKQKVQ  206 (334)
Q Consensus       134 ~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~---~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~  206 (334)
                      +++++.+.    .++..+++.++++++++++..|..+..+.....   ....+++++|.+++||+++++++.+.+.+.++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~  324 (579)
T PRK09192        245 LSVDYLPTRDFARRPLQWLDLISRNRGTISYSPPFGYELCARRVNSKDLAELDLSCWRVAGIGADMIRPDVLHQFAEAFA  324 (579)
T ss_pred             CeeEeeCHHHHHHCHHHHHHHHHhcCcEEEeCCcHHHHHHHHhhccccccccchhhhheeEecCccCCHHHHHHHHHHHH
Confidence            98877652    368899999999999987776665555543221   22356789999999999999999999999875


Q ss_pred             cCC---CceeeccCCCCCCCcccccccCC--------------------------------------------------C
Q psy12107        207 RED---ITIRQGYGMTETSPCTLYTRFAI--------------------------------------------------P  233 (334)
Q Consensus       207 ~~~---~~i~~~YG~tE~g~~~~~~~~~~--------------------------------------------------~  233 (334)
                      ..+   ..+++.||+||++...+......                                                  .
T Consensus       325 ~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d~~~~  404 (579)
T PRK09192        325 PAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNEAGM  404 (579)
T ss_pred             hcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEECCCCC
Confidence            211   24899999999875443221100                                                  0


Q ss_pred             CccccCccc------cccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee----------
Q psy12107        234 EAKLGSTGQ------LVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA----------  297 (334)
Q Consensus       234 ~~~~~~~G~------~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------  297 (334)
                      ....+..|+      .++.||+++ +.+.+.+..++||+|||+|++ ++|+++++||.+|+||++|++|+          
T Consensus       405 ~~~~g~~Gel~i~g~~~~~gY~~~-~~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~  482 (579)
T PRK09192        405 PLPERVVGHICVRGPSLMSGYFRD-EESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQ  482 (579)
T ss_pred             CCCCCCEEEEEecCCchhhhhcCC-ccccccccCCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHh
Confidence            011122233      378899999 667777878999999999999 99999999999999999999998          


Q ss_pred             -------------------------------------------------eeeeccCcEEEee--cCCCCCCchhhHHHHh
Q psy12107        298 -------------------------------------------------PYKKLAGGVKFLE--TIPRNPAGKVLRNELK  326 (334)
Q Consensus       298 -------------------------------------------------~~~~~~~~i~~v~--~lP~t~~GKi~r~~l~  326 (334)
                                                                       .++.+.. +.+++  +||+|++||++|++|+
T Consensus       483 ~p~V~~~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~-i~~~~~~~lP~t~~GKv~R~~l~  561 (579)
T PRK09192        483 EPELRSGDAAAFSIAQENGEKIVLLVQCRISDEERRGQLIHALAALVRSEFGVEAA-VELVPPHSLPRTSSGKLSRAKAK  561 (579)
T ss_pred             cCCccCCcEEEEEeccCCCeeEEEEEEecCCChHHHHHHHHHHHHHHHHHhCCCce-EEEeCCCCcCCCCCcchhHHHHH
Confidence                                                             1223333 77775  8999999999999999


Q ss_pred             hhhcCC
Q psy12107        327 VFGTNP  332 (334)
Q Consensus       327 ~~~~~~  332 (334)
                      +.+.+.
T Consensus       562 ~~~~~~  567 (579)
T PRK09192        562 KRYLSG  567 (579)
T ss_pred             HHHHcC
Confidence            987653

>PRK05850 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.2e-38  Score=301.20  Aligned_cols=274  Identities=23%  Similarity=0.387  Sum_probs=204.4

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++++++++|||||||.||||+++|+++..+.......+... .......++++++.+|++|..++...++.++..|+
T Consensus       156 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~pl~h~~g~~~~~~~~l~~G~  234 (578)
T PRK05850        156 PRDLPSTAYLQYTSGSTRTPAGVMVSHRNVIANFEQLMSDYFGD-TGGVPPPDTTVVSWLPFYHDMGLVLGVCAPILGGC  234 (578)
T ss_pred             CCCCCCeEEEEeCCCCCCCCceEEEeHHHHHHHHHHHHHhhccc-cccCCCCcceEEEECCCCCCchhHHHHHHHHhcCC
Confidence            34678999999999999999999999999987765443321100 00012457899999999999998877899999999


Q ss_pred             EEEEcCC----CCHHHHHHHHHHcCCeEEeechHHHH-HHhcCC---CCCccccccceeeeecCCCCCHHHHHHHHHHhc
Q psy12107        135 HMITIPK----FTPETYIECVVKYKPTILFVVPSLLL-FLASHP---AVTPEHLASIREVTCGAAPATKSLIDKFKQKVQ  206 (334)
Q Consensus       135 ~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~-~l~~~~---~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~  206 (334)
                      ++++.++    .++..+++.+++++++.. .+|+++. .+....   .....+++++|.+++||+++++++.+++.+.|+
T Consensus       235 ~~~~~~~~~~~~~p~~~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~  313 (578)
T PRK05850        235 PAVLTSPVAFLQRPARWMQLLASNPHAFS-AAPNFAFELAVRKTSDDDMAGLDLGGVLGIISGSERVHPATLKRFADRFA  313 (578)
T ss_pred             cEEEeCHHHHHHCHHHHHHHHHHcCCeEE-eCCcHHHHHHHHhcchhhhcCcchhhheeEEECcCCCCHHHHHHHHHHHH
Confidence            9998764    278999999999999855 5565543 333211   122346788999999999999999999999884


Q ss_pred             c---CCCceeeccCCCCCCCccccccc-----------------------------------------------CCCCcc
Q psy12107        207 R---EDITIRQGYGMTETSPCTLYTRF-----------------------------------------------AIPEAK  236 (334)
Q Consensus       207 ~---~~~~i~~~YG~tE~g~~~~~~~~-----------------------------------------------~~~~~~  236 (334)
                      .   ++..+++.||+||++..+.....                                               ...+..
T Consensus       314 ~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~~~~~~ivd~~~~~~~~  393 (578)
T PRK05850        314 PFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPRSPTVRIVDPDTCIECP  393 (578)
T ss_pred             hcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCCCCEEEEEcCCCCcCCC
Confidence            2   23468999999998643221100                                               001112


Q ss_pred             ccCcccc------ccccccCCccccccccC-----------CCCceecCceEEEecCCcEEEEccCCceEEEcCEEeee-
Q psy12107        237 LGSTGQL------VMLGYLKNEEATKETVD-----------SEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP-  298 (334)
Q Consensus       237 ~~~~G~~------~~~gy~~~~~~~~~~~~-----------~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~~-  298 (334)
                      .+..|++      ++.||+++++.+.+.|.           .++||+|||+|+++ ||+++++||.+|+||++|++|+| 
T Consensus       394 ~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~  472 (578)
T PRK05850        394 AGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRNHYPD  472 (578)
T ss_pred             CCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEECCeecCHH
Confidence            2334443      78999999999998874           25799999999997 99999999999999999999990 


Q ss_pred             --------------------------------------------------------------eeeccCcEEEee--cCCC
Q psy12107        299 --------------------------------------------------------------YKKLAGGVKFLE--TIPR  314 (334)
Q Consensus       299 --------------------------------------------------------------~~~~~~~i~~v~--~lP~  314 (334)
                                                                                    ...|.. +.+++  +||+
T Consensus       473 eIE~~l~~~~~~~~~v~~v~~~~~~~~~a~v~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~~~~-~~~~~~~~iP~  551 (578)
T PRK05850        473 DIEATIQEITGGRVAAISVPDDGTEKLVAIIELKKRGDSDEEAMDRLRTVKREVTSAISKSHGLSVAD-LVLVAPGSIPI  551 (578)
T ss_pred             HHHHHHHHhcCCcEEEEEecCCCceEEEEEEEeccccCcchhhhhhHHHHHHHHHHHHHHHhCCCceE-EEEeCCCCcCC
Confidence                                                                          001222 56664  8999


Q ss_pred             CCCchhhHHHHhhhhcCC
Q psy12107        315 NPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       315 t~~GKi~r~~l~~~~~~~  332 (334)
                      |++|||+|++|++.+.+.
T Consensus       552 t~~GKi~R~~l~~~~~~~  569 (578)
T PRK05850        552 TTSGKIRRAACVEQYRQD  569 (578)
T ss_pred             CCCchHHHHHHHHHHHcC
Confidence            999999999999997653

>PRK07868 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.9e-37  Score=308.48  Aligned_cols=256  Identities=18%  Similarity=0.238  Sum_probs=196.0

Q ss_pred             CCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEE
Q psy12107         57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHM  136 (334)
Q Consensus        57 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~  136 (334)
                      .++|+++|+|| ||||.||++.++|.++..........+       ....+|++++.+|++|.+++...++..+..|+++
T Consensus       604 ~~dd~a~IiyT-gStgtpKpk~vt~~~~~~~~~~~~~~~-------~l~~~d~~L~~~Pl~h~~gl~~~l~~~l~gG~~v  675 (994)
T PRK07868        604 LARDLAFIAFS-TAGGELVAKQITNYRWALSAFGTASAA-------ALDRRDTVYCLTPLHHESGLLVSLGGAVVGGSRI  675 (994)
T ss_pred             CCCccEEEEEe-CCCCCcCcEEEehHHHHHHHHhhhhhc-------CCCCCCeEEEecChHHHhHHHHHHHHHhccceEE
Confidence            36899999999 577777777778766544332222221       2567899999999999999987666777888888


Q ss_pred             EEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeecc
Q psy12107        137 ITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGY  216 (334)
Q Consensus       137 ~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~Y  216 (334)
                      ++.+.++++.+++.|+++++|+++++|+++..|++.......++++||.++  |+.+++++.+++.+.++  +++++|.|
T Consensus       676 vl~~~~~~~~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~~~~~slr~~~--g~gl~~~l~~~~~~~~~--~~~l~~~Y  751 (994)
T PRK07868        676 ALSRGLDPDRFVQEVRQYGVTVVSYTWAMLREVVDDPAFVLHGNHPVRLFI--GSGMPTGLWERVVEAFA--PAHVVEFF  751 (994)
T ss_pred             EecCCCCHHHHHHHHHHhCCcEEEeHHHHHHHHHhCcCCccCCCCceEEEe--cCCCCHHHHHHHHHHhC--chheeeee
Confidence            888889999999999999999999999999999886554445677899776  33499999999999997  46899999


Q ss_pred             CCCCCCCcccccccCCCCccccCcc--------------------------------------cccccc--ccCCccccc
Q psy12107        217 GMTETSPCTLYTRFAIPEAKLGSTG--------------------------------------QLVMLG--YLKNEEATK  256 (334)
Q Consensus       217 G~tE~g~~~~~~~~~~~~~~~~~~G--------------------------------------~~~~~g--y~~~~~~~~  256 (334)
                      |+||++.+......    ...+++|                                      ++..++  |+ +|+.+.
T Consensus       752 G~TE~~~~~~~~~~----~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~~-~p~~t~  826 (994)
T PRK07868        752 ATTDGQAVLANVSG----AKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGPI-DPTASV  826 (994)
T ss_pred             ecccccccccccCC----CCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCCC-Chhhhh
Confidence            99998754321110    1222333                                      332222  22 232221


Q ss_pred             --cccC-CCCceecCceEEEecCCcEEEEccCCceEEEcCEEee------------------------------------
Q psy12107        257 --ETVD-SEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA------------------------------------  297 (334)
Q Consensus       257 --~~~~-~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~------------------------------------  297 (334)
                        ..|. .+|||+|||+|++|+||+++++||.||+||++|.+|+                                    
T Consensus       827 ~~~~~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~  906 (994)
T PRK07868        827 KRGVFAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTL  906 (994)
T ss_pred             HhcccccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEe
Confidence              1242 4799999999999999999999999999999988998                                    


Q ss_pred             -------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhc
Q psy12107        298 -------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGT  330 (334)
Q Consensus       298 -------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~  330 (334)
                                         ++++|.. |+++++||+|++|||+|++|++...
T Consensus       907 ~~~~~~~~~~L~~~l~~l~~y~vP~~-i~~v~~lP~T~sGKi~r~~L~~~~l  957 (994)
T PRK07868        907 RPGAAITAADLTEALASLPVGLGPDI-VHVVPEIPLSATYRPTVSALRAAGI  957 (994)
T ss_pred             CCCCcCCHHHHHHHHHhCCCCcCCeE-EEEeCCCCCCccccEehHHHHhcCC
Confidence                               4566776 9999999999999999999998754

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=9e-37  Score=288.25  Aligned_cols=283  Identities=26%  Similarity=0.417  Sum_probs=210.9

Q ss_pred             ccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCC-ceEEEecc
Q psy12107         37 IFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQ-ETVLSVLP  115 (334)
Q Consensus        37 ~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~p  115 (334)
                      ...+++++.....  ......++++++++|||||||.||+|+++|+++..+........       ..... |++++.+|
T Consensus       132 ~~~~~~l~~~~~~--~~~~~~~~~~a~i~~TSGtTG~PKgv~~s~~~~~~~~~~~~~~~-------~~~~~~d~~~~~~p  202 (545)
T PRK07768        132 VLTVADLLAADPI--DPVETGEDDLALMQLTSGSTGSPKAVQITHGNLYANAEAMFVAA-------EFDVETDVMVSWLP  202 (545)
T ss_pred             eeehhhhcccCCC--CcCCCCCCCEEEEEeCCCCCCCCceEEEcHHHHHHHHHHHHHhc-------CCCCCCceeEEeCC
Confidence            4456666532221  12345679999999999999999999999999988766544432       13444 89999999


Q ss_pred             hhhhhHHHHHHHHHHHhCcEEEEcCC----CCHHHHHHHHHHcCCeEEeechHHHHHHhcCC----CCCccccccceeee
Q psy12107        116 FFHIYGFNGILNVVMMYGMHMITIPK----FTPETYIECVVKYKPTILFVVPSLLLFLASHP----AVTPEHLASIREVT  187 (334)
Q Consensus       116 ~~~~~~~~~~~~~~~~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~----~~~~~~~~~lr~v~  187 (334)
                      ++|.+++...+..++..|+++++.+.    .++..+.+.+++++++++.+.|..+..+.+..    .....++++||.++
T Consensus       203 ~~~~~g~~~~~~~~l~~g~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lr~~~  282 (545)
T PRK07768        203 LFHDMGMVGFLTVPMYFGAELVKVTPMDFLRDPLLWAELISKYRGTMTAAPNFAYALLARRLRRQAKPGAFDLSSLRFAL  282 (545)
T ss_pred             CccchHHHHHHHHHHHCCceEEEeCHHHHHHhHHHHHHHHHHhCCEEEECchHHHHHHHHHHhccccccCCCchheeeEE
Confidence            99999988767788999999888754    36788899999999999988887776665422    11235678999999


Q ss_pred             ecCCCCCHHHHHHHHHH---hccCCCceeeccCCCCCCCcccccccC---------------------------------
Q psy12107        188 CGAAPATKSLIDKFKQK---VQREDITIRQGYGMTETSPCTLYTRFA---------------------------------  231 (334)
Q Consensus       188 ~~G~~l~~~~~~~~~~~---~~~~~~~i~~~YG~tE~g~~~~~~~~~---------------------------------  231 (334)
                      ++|+++++++.+.+.+.   ++.+...+++.||+||++..++.....                                 
T Consensus       283 ~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (545)
T PRK07768        283 NGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATL  362 (545)
T ss_pred             eccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEec
Confidence            99999999999999875   544233599999999998644321110                                 


Q ss_pred             ---------------CCCccccCccc------cccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEE
Q psy12107        232 ---------------IPEAKLGSTGQ------LVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIK  290 (334)
Q Consensus       232 ---------------~~~~~~~~~G~------~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~  290 (334)
                                     ......+..|+      .++.||++++.. ...+..++||+|||++++++||.++++||.+|+||
T Consensus       363 G~~~~g~~~~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~-~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~  441 (545)
T PRK07768        363 GPPLPGLEVRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGF-IPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVII  441 (545)
T ss_pred             cCCCCCCEEEEECCCCCCCCCCCEEEEEEccCcccccccCCCCC-cccccCCCeeeccceEEEecCCEEEEEccccceEE
Confidence                           00011222333      367899976543 33444688999999999999999999999999999


Q ss_pred             EcCEEee------------------------------------------------------------ee--eeccCcEEE
Q psy12107        291 VKGNQVA------------------------------------------------------------PY--KKLAGGVKF  308 (334)
Q Consensus       291 ~~G~~i~------------------------------------------------------------~~--~~~~~~i~~  308 (334)
                      ++|++|+                                                            ++  ..|.. |.+
T Consensus       442 ~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~~l~~~~~~~p~~-v~~  520 (545)
T PRK07768        442 MAGRNIYPTDIERAAARVEGVRPGNAVAVRLDAGHSREGFAVAVESNAFEDPAEVRRIRHQVAHEVVAEVGVRPRN-VVV  520 (545)
T ss_pred             ECCEecCHHHHHHHHHhCcccccceEEEEEecCCCCceEEEEEEEecccccHHHHHHHHHHHHHHHHHHhCCCccE-EEE
Confidence            9999998                                                            00  12333 777


Q ss_pred             ee--cCCCCCCchhhHHHHhhhhc
Q psy12107        309 LE--TIPRNPAGKVLRNELKVFGT  330 (334)
Q Consensus       309 v~--~lP~t~~GKi~r~~l~~~~~  330 (334)
                      ++  +||+|++||++|+.|++.+.
T Consensus       521 v~~~~lP~t~~GKi~r~~l~~~~~  544 (545)
T PRK07768        521 LGPGSIPKTPSGKLRRANAAELVT  544 (545)
T ss_pred             eCCCcCCCCCchhHHHHHHHHhcC
Confidence            76  89999999999999999864

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=100.00  E-value=1.6e-37  Score=283.98  Aligned_cols=227  Identities=35%  Similarity=0.621  Sum_probs=182.6

Q ss_pred             CCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEE
Q psy12107         57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHM  136 (334)
Q Consensus        57 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~  136 (334)
                      .++++++++|||||||.||+|.++|+++.............     ...  |++++..|++|.+++...++.++..|+++
T Consensus       153 ~~~~~~~i~~TSGTTG~pK~v~~t~~~~~~~~~~~~~~~~~-----~~~--d~~l~~~p~~~~~g~~~~~~~~l~~G~~~  225 (417)
T PF00501_consen  153 SPDDPAFILFTSGTTGKPKGVVLTHRNLLAQARALALPEYF-----GLG--DRILSFLPLSHIFGLISALLAALFSGATL  225 (417)
T ss_dssp             TTTSEEEEEEESSSSSSEEEEEEEHHHHHHHHHHHHHHHTT-----TTT--TEEEESS-TTSHHHHHHHHHHHHHCTSEE
T ss_pred             CccceeEeecccccccccccccccccccccccccccccccc-----ccC--ceEEeeccccccccccccccccccccccc
Confidence            56899999999999999999999999998887664310000     112  59999999999999966689999999999


Q ss_pred             EEcCCCC---HHHHHHHHHHcCCeEEeechHHHHHHhcCCCCC----ccccccceeeeecCCCCCHHHHHHHHHHhccCC
Q psy12107        137 ITIPKFT---PETYIECVVKYKPTILFVVPSLLLFLASHPAVT----PEHLASIREVTCGAAPATKSLIDKFKQKVQRED  209 (334)
Q Consensus       137 ~~~~~~~---~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~----~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~  209 (334)
                      ++.+...   ++.+++.|+++++|+++++|+++..|++..+..    ..++++||.++++|+++++++.+++++.++  .
T Consensus       226 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~--~  303 (417)
T PF00501_consen  226 VLPSPFDLFDPESLLELISRYKPTILFAVPSMLEALLQSPEEKTKISKKDLSSLRTVISGGEPLPPDLLRRLRKAFG--N  303 (417)
T ss_dssp             EEESSHHHHHHHHHHHHHHHHTESEEEEEHHHHHHHHHHHHTTHHGTTTTGTT-SEEEEESST-CHHHHHHHHHHHT--T
T ss_pred             cccccccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccCChhhccccccccc--c
Confidence            9998754   477899999999999999999999998733222    357888999999999999999999999998  3


Q ss_pred             CceeeccCCCCCCCcccccccCCC-------------------------CccccCcccc------ccccccCCccccccc
Q psy12107        210 ITIRQGYGMTETSPCTLYTRFAIP-------------------------EAKLGSTGQL------VMLGYLKNEEATKET  258 (334)
Q Consensus       210 ~~i~~~YG~tE~g~~~~~~~~~~~-------------------------~~~~~~~G~~------~~~gy~~~~~~~~~~  258 (334)
                      +++++.||+||++.+++.......                         +...+..|++      ++.||+++++.+.+.
T Consensus       304 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~  383 (417)
T PF00501_consen  304 APIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEA  383 (417)
T ss_dssp             SEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHH
T ss_pred             ccceecccccccceeeecccccccccccccccccccccccccccccccccccccccccccccCCccceeeeccccccccc
Confidence            579999999999987764311000                         0011223333      788999999999999


Q ss_pred             cCCCCceecCceEEEecCCcEEEEccCCceEEEc
Q psy12107        259 VDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK  292 (334)
Q Consensus       259 ~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~  292 (334)
                      |..+|||+|||+|++|+||+++++||.||+||++
T Consensus       384 ~~~~~~~~TGD~g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  384 FIDDGWYRTGDLGRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             EETTSEEEEEEEEEEETTSEEEEEEEGSCEEEET
T ss_pred             cccccceecceEEEECCCCeEEEEEeeCCEEEeC
Confidence            9766899999999999999999999999999975

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=100.00  E-value=7.4e-36  Score=267.25  Aligned_cols=238  Identities=21%  Similarity=0.201  Sum_probs=181.2

Q ss_pred             CCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEE
Q psy12107         59 NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMIT  138 (334)
Q Consensus        59 ~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~  138 (334)
                      +..++++|||||||.||+|+++|+++.++.......+..     ...+.+++++.+|++|++++...++.++..|+++++
T Consensus        95 ~~~~~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~dr~l~~~Pl~h~~g~~~~~l~~l~~G~~vv~  169 (386)
T TIGR02372        95 PTARFTFATSGSTGTPKPVTHSWAALLSEAQAIAKILGE-----RPPPVRRVISCVPAHHLYGFLFSCLLPSRRGLEAKQ  169 (386)
T ss_pred             CCceEEEECCCCCCCCceeEeeHHHHHHHHHHHHHHhCc-----CCCCCCeEEEeCCcHHHHHHHHHHHHHHHCCCeEEe
Confidence            567899999999999999999999998777655443311     123456899999999999987767888899999999


Q ss_pred             cCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCC
Q psy12107        139 IPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGM  218 (334)
Q Consensus       139 ~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~  218 (334)
                      .+.+++..+++.++.+  +++.++|+++..|.+..    .++++++. ++||+++++++.+.+++. +  ...+++.||+
T Consensus       170 ~~~~~~~~~l~~i~~~--t~~~~~P~~l~~l~~~~----~~l~slr~-i~gGa~l~~~l~~~~~~~-g--~~~v~~~YG~  239 (386)
T TIGR02372       170 LAAAPASGIMRHARPG--DLIVGTPFIWEQLADLD----YRLPGVVG-VSSGAPSTAATWRCLLAA-G--LARLLEVYGA  239 (386)
T ss_pred             cCCCChHHHHHhhccC--CEEEECcHHHHHHHhhC----cCCCccee-EecCCCCCHHHHHHHHHh-c--ccchhheecc
Confidence            8888988888888753  89999999999997643    34667775 678999999999999875 4  2368999999


Q ss_pred             CCCCCcccccccCCCCccccCccccccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee-
Q psy12107        219 TETSPCTLYTRFAIPEAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-  297 (334)
Q Consensus       219 tE~g~~~~~~~~~~~~~~~~~~G~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-  297 (334)
                      ||++.+++....       +..|.++ .++-.... +...-.+..|++|||+++++++|.++++||+||+||++|++|+ 
T Consensus       240 TEt~~i~~~~~~-------~~~~~~~-p~~~~~~~-~~~~~g~~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p  310 (386)
T TIGR02372       240 TETGGIGLREAP-------DDPFRLL-PDLACFAD-TLSSAGLARRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSP  310 (386)
T ss_pred             ccccccccccCC-------CCCcccC-CCccccCC-CccCCCccceeecCceEEEcCCCcEEEecccCCEEEECCEEEcH
Confidence            999875543211       1122221 11100000 0000012347999999999999999999999999999999999 


Q ss_pred             -----------------------------------------------------eeeeccCcEEEeecCCCCCCchhh
Q psy12107        298 -----------------------------------------------------PYKKLAGGVKFLETIPRNPAGKVL  321 (334)
Q Consensus       298 -----------------------------------------------------~~~~~~~~i~~v~~lP~t~~GKi~  321 (334)
                                                                           +++.|.. +.++++||+|++||++
T Consensus       311 ~eIE~~l~~~p~V~~~~v~~~g~~~~a~vv~~~~~~~~~~~~~l~~~~~~~L~~~~~P~~-i~~~~~lP~t~~GKi~  386 (386)
T TIGR02372       311 GHVRDILERNPRVRAAAVRLDGRRLKAFIVVAEDADEAELEIELRATAARHLPAPARPDR-FRFGTELPRTGAGKLA  386 (386)
T ss_pred             HHHHHHHHcCCCceEEEEEcCCceEEEEEEECCCCChHHHHHHHHHHHHHhCCCCCCCcE-EEEcccCCCCCCCCcC
Confidence                                                                 5566766 9999999999999985

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>KOG1179|consensus

Probab=100.00  E-value=8.9e-36  Score=261.84  Aligned_cols=317  Identities=22%  Similarity=0.293  Sum_probs=242.7

Q ss_pred             CCcchhhHHHHHHhhhCCCC-ceEEEEcCCCCCCCCccchhhhhcCCCCCC----CCCCCCCCCEEEEecCCCCCCCchh
Q psy12107          2 CNIPQLLEVGTKIGATLPNF-RGTIVVGGEHDKSKNIFGFKQLVTSQPPDF----QLPKISPNDLAMLPYSSGTTGVPKG   76 (334)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~-~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~----~~~~~~~~~~a~i~~TSGTTG~PK~   76 (334)
                      +.++++++.+.++.+.+... -++...+..+ .+++..++.+.++.++.+.    .....+-.++++.+|||||||.||.
T Consensus       181 v~~~el~~~~~e~~~~l~~~~i~~~~~~~~~-~~~g~~~L~~~l~~~~~~~vp~~~~~~~~~~s~~lyIYTSGTTGLPKa  259 (649)
T KOG1179|consen  181 VVGPELLNALEEILPLLIKNGIHVFSLGPTS-VPDGIESLLAKLSAAPKHPVPVSTRSGLTFRSPLLYIYTSGTTGLPKA  259 (649)
T ss_pred             EECHHHHHHHHhcchhhhhccceEEecCCCC-CCchHHHHHHhhcccccCCCCcccCCCccccceeEEEEcCCCCCCCHH
Confidence            44677777777774332211 1222222221 1334555555553332222    1345566799999999999999999


Q ss_pred             hhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCC
Q psy12107         77 VKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKP  156 (334)
Q Consensus        77 v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~  156 (334)
                      .+++|.............+       ..+++|+++..+|++|+.+...++..++..|+++++-.+|+...+|+...+|++
T Consensus       260 Avith~r~~~~a~g~~~~~-------g~~~~DvvY~~lPLYHsaa~ilGi~~~l~~GaT~VlrkKFSAS~FW~DC~k~~~  332 (649)
T KOG1179|consen  260 AVITHLRYLQGAAGFYYVF-------GMTADDVVYTTLPLYHSAAGILGIGGCLLHGATVVLRKKFSASNFWDDCRKYNV  332 (649)
T ss_pred             HHHHHHHHHHHHHHHHHHh-------CCCccceEEEcchhHHHHHHHHHHHHHHhcCceEEEecccchhhhHHHHHHhCC
Confidence            9999998776555333333       378999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccC-----
Q psy12107        157 TILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA-----  231 (334)
Q Consensus       157 t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~-----  231 (334)
                      |++.-.-.+.+.|.+.+....+.-..+|..+  |..+.++.++.+.++||.  .+|.+.||+||+....+.-...     
T Consensus       333 Tv~QYIGElcRYLl~~p~~~~er~HkVRla~--GNGLR~diW~~Fv~RFg~--~~IgE~YgaTEgn~~~~N~d~~vGA~G  408 (649)
T KOG1179|consen  333 TVIQYIGELCRYLLNQPPSPEERQHKVRLAY--GNGLRPDIWQQFVKRFGI--IKIGEFYGATEGNSNLVNYDGRVGACG  408 (649)
T ss_pred             eeeehHHHHHHHHHcCCCChhhcCceEEEEe--cCCCCchHHHHHHHHcCC--CeEEEEeccccCcceeeeecCcccccc
Confidence            9999999999999999887666667788665  888999999999999994  5799999999987433211000     


Q ss_pred             ---------------------CC----------CccccCcccc-----------ccccccCCcccccccc------CCCC
Q psy12107        232 ---------------------IP----------EAKLGSTGQL-----------VMLGYLKNEEATKETV------DSEG  263 (334)
Q Consensus       232 ---------------------~~----------~~~~~~~G~~-----------~~~gy~~~~~~~~~~~------~~~~  263 (334)
                                           +.          ...+|+.|..           -|.||.+..+.+...+      .+|-
T Consensus       409 ~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~  488 (649)
T KOG1179|consen  409 FMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDV  488 (649)
T ss_pred             chhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcE
Confidence                                 00          1233444433           3789999777776654      2356


Q ss_pred             ceecCceEEEecCCcEEEEccCCceEEEcCEEee----------------------------------------------
Q psy12107        264 WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA----------------------------------------------  297 (334)
Q Consensus       264 ~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------------------------------------------  297 (334)
                      ||.|||+-.+|+.|++||.+|..|.++-+|+||+                                              
T Consensus       489 ~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGRaGMAaI~~~p~~~~d~  568 (649)
T KOG1179|consen  489 YFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGRAGMAAIVLDPTTEKDL  568 (649)
T ss_pred             EEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCccceEEEEecCcccchH
Confidence            9999999999999999999999999999999999                                              


Q ss_pred             ------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 ------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 ------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                  +|..|.- ++++++|++|.+-|..|..|++..-+
T Consensus       569 ~~l~~~l~~~LP~YA~P~F-lRl~~~i~~TgTFKl~K~~L~~egf~  613 (649)
T KOG1179|consen  569 EKLYQHLRENLPSYARPRF-LRLQDEIEKTGTFKLQKTELQKEGFN  613 (649)
T ss_pred             HHHHHHHHhhCccccchHH-HHHHhhhhcccchhhHHHHHHHccCC
Confidence                        5556666 99999999999999999999998644

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=100.00  E-value=2.4e-34  Score=262.18  Aligned_cols=236  Identities=27%  Similarity=0.369  Sum_probs=194.7

Q ss_pred             CCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcE
Q psy12107         56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMH  135 (334)
Q Consensus        56 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~  135 (334)
                      ..++++++++|||||||.||+|.++|+++..+.......+       .....+++++..|++|..++.. ++.++..|++
T Consensus       117 ~~~~~~~~i~~TSGTtG~pK~v~~s~~~~~~~~~~~~~~~-------~~~~~~~~~~~~p~~~~~~~~~-~~~~l~~g~~  188 (408)
T TIGR01733       117 SGPDDLAYVIYTSGSTGRPKGVVVTHRSLVNLLAWLARRY-------GLDPDDRVLQFASLSFDASVEE-IFGTLLAGAT  188 (408)
T ss_pred             CCCCCcEEEEEcCCCCCCCCEEEeccHHHHHHHHHHHHhc-------CCCCCceEEEecCCccchhHHH-HHHHHhCCCE
Confidence            3478999999999999999999999999988777665543       2567899999999999998765 7889999999


Q ss_pred             EEEcCCCC---HHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCce
Q psy12107        136 MITIPKFT---PETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITI  212 (334)
Q Consensus       136 ~~~~~~~~---~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i  212 (334)
                      +++.+...   +..+.+.++++++|.+.++|.++..|.+...   ..+++||.+++||+++++++.+.+++.++  ++.+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~p~~~~~l~~~~~---~~~~~l~~v~~~g~~~~~~~~~~~~~~~~--~~~i  263 (408)
T TIGR01733       189 LVVPPEDEERDAALLAALIAEHPVTVLNLTPSLLALLAAALP---PALASLRLVILGGEALTPALVDRWRARGP--GARL  263 (408)
T ss_pred             EEEcChhhccCHHHHHHHHHHcCceEEEeCHHHHHHHHHhhh---hcccCceEEEEeCccCCHHHHHHHHHhCC--CcEE
Confidence            99877643   6889999999999999999999999988754   56789999999999999999999999997  4689


Q ss_pred             eeccCCCCCCCcccccccC-C--------------------------CCccccCcccc------ccccccCCcccccccc
Q psy12107        213 RQGYGMTETSPCTLYTRFA-I--------------------------PEAKLGSTGQL------VMLGYLKNEEATKETV  259 (334)
Q Consensus       213 ~~~YG~tE~g~~~~~~~~~-~--------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~  259 (334)
                      ++.||+||++.++...... .                          .....+..|++      ++.||+++++.+.+.|
T Consensus       264 ~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~  343 (408)
T TIGR01733       264 INLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERF  343 (408)
T ss_pred             EecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECCCCCCCCCCCceEEEecCccccccccCChhhhhcce
Confidence            9999999998765321100 0                          00111223333      6889999999888776


Q ss_pred             CCC------C--ceecCceEEEecCCcEEEEccCCceEEEcCEEeeeeeeccC
Q psy12107        260 DSE------G--WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAPYKKLAG  304 (334)
Q Consensus       260 ~~~------~--~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~~~~~~~~  304 (334)
                      ..+      +  ||+|||++++|++|++++.||.+|+|+.+|++|+|..+...
T Consensus       344 ~~~~~~~~~~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~  396 (408)
T TIGR01733       344 VPDPFAGGDGARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAA  396 (408)
T ss_pred             eeCCCCCCCCceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHH
Confidence            432      2  99999999999999999999999999999999998776554

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=100.00  E-value=4.2e-32  Score=248.13  Aligned_cols=229  Identities=19%  Similarity=0.205  Sum_probs=168.4

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ..+.++++++++||||||.||++.++|.++..+.......+...    +..++|++++..++.+..+.....+.....|+
T Consensus        71 ~~~~~~~~~~~~TSGTTG~Pk~v~~t~~~~~~~~~~~~~~~~~~----g~~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~  146 (422)
T TIGR02155        71 AVPREQVVRIHASSGTTGKPTVVGYTQNDIDTWSSVVARSIRAA----GGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGC  146 (422)
T ss_pred             CCChHHcEEEEECCCCCCCCeEeccCHHHHHHHHHHHHHHHHHc----CCCCCcEEEEccCccccchhHHHHHHHHHcCc
Confidence            34667899999999999999999999999876543332221111    25678888887665543333333556778899


Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCcc--ccccceeeeecCCCCCHHHHHHHHHHhccCCCce
Q psy12107        135 HMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE--HLASIREVTCGAAPATKSLIDKFKQKVQREDITI  212 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~--~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i  212 (334)
                      +++..+..+++.+++.|++++|++++++|+++..|++.......  ...+||.++++||++++++++.+++.|++   ++
T Consensus       147 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~---~v  223 (422)
T TIGR02155       147 TVVPISGGQTEKQVQLIQDFKPDIIMVTPSYMLNLLEELKRMGIDPAQTSLQVGIFGAEPWTNAMRKEIEARLGM---KA  223 (422)
T ss_pred             EEEecCCCCHHHHHHHHHHHCCCEEEEcHHHHHHHHHHHHHcCCCcccCceEEEEEeCCcCCHHHHHHHHHHhCC---ce
Confidence            99888777889999999999999999999999999865432222  23589999999999999999999999975   79


Q ss_pred             eeccCCCCCCC--cccccccC--------------------CCCccccCccccccccccCCccccccccCCCCceecCce
Q psy12107        213 RQGYGMTETSP--CTLYTRFA--------------------IPEAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDV  270 (334)
Q Consensus       213 ~~~YG~tE~g~--~~~~~~~~--------------------~~~~~~~~~G~~~~~gy~~~~~~~~~~~~~~~~~~TGD~  270 (334)
                      ++.||+||+++  +...+...                    ..+...|..|+++.++.      +...+ +.+||+|||+
T Consensus       224 ~~~YG~tE~~~~~~~~~~~~~~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~------~~~~~-p~~ry~TGDl  296 (422)
T TIGR02155       224 TDIYGLSEVIGPGVAMECVETQDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTL------TKEAL-PVIRYRTRDL  296 (422)
T ss_pred             EecccchhhcCCceeecccccCCCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecC------Ccccc-ceeeEEcCcE
Confidence            99999999842  22111100                    01122344555555543      22334 5789999999


Q ss_pred             EEEecC-C-----cEEEEccCCceEEEcCEEee
Q psy12107        271 AYYDED-G-----YFYIVDRTKELIKVKGNQVA  297 (334)
Q Consensus       271 ~~~~~d-g-----~~~~~GR~~d~i~~~G~~i~  297 (334)
                      ++++++ |     .+++.||.+|+|+++|.+|+
T Consensus       297 ~~~~~~~Gr~~~~~~~i~GR~~d~i~~~G~~v~  329 (422)
T TIGR02155       297 TRLLPGTARTMRRMDRITGRSDDMLIIRGVNVF  329 (422)
T ss_pred             EEEECCCCCcccccccccCccCCeEEECCEEEC
Confidence            999875 4     46899999999999999998

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.94  E-value=3.1e-26  Score=209.99  Aligned_cols=233  Identities=19%  Similarity=0.142  Sum_probs=166.4

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      .++.++++.+++||||||.||+|.+||.++..+.....+.+...    +..++|+++...+..+..+.....++++..|+
T Consensus        82 ~~~~~~i~~i~~TSGTTG~Pk~v~~T~~dl~~~~~~~~r~~~~~----G~~~gD~vl~~~~~~~~~g~~~~~~~~~~~Ga  157 (445)
T TIGR03335        82 SADWKDIYTIHETSGTSGTPKSFFLTWDDWKRYAEKYARSFVSQ----GFTAGDRMVICASYGMNVGANTMTLAAREVGM  157 (445)
T ss_pred             cCCHHHeEEEEeCCCCCCCcceeeecHHHHHHHHHHHHHHHHHc----CCCCCCeEEEEecCCcchhHHHHHHHHHHcCC
Confidence            45678999999999999999999999999876654443332111    25678899988888776665444566778888


Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCcc--ccccceeeeecCCCCCHHHHHHHHHHhccCCCce
Q psy12107        135 HMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE--HLASIREVTCGAAPATKSLIDKFKQKVQREDITI  212 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~--~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i  212 (334)
                      +++....  ....++.|++++++.+.++|+.+..|++..+....  ...++|.+++||+++++++++.+++.||+   ++
T Consensus       158 ~vi~~~~--~~~~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~---~v  232 (445)
T TIGR03335       158 SIIPEGK--CTFPIRIIESYRPTGIVASVFKLLRLARRMKAEGIDPAESSIRRLVVGGESFADESRNYVEELWGC---EV  232 (445)
T ss_pred             EEEcCCc--hhHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCcceEEEEcCCCCCHHHHHHHHHHhCC---cE
Confidence            8765442  35678999999999999999998888764332222  24689999999999999999999999975   79


Q ss_pred             eeccCCCCCCCcccccccCC-------------------CCccccCccccccccccCCccccccccCCCCceecCceEEE
Q psy12107        213 RQGYGMTETSPCTLYTRFAI-------------------PEAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYY  273 (334)
Q Consensus       213 ~~~YG~tE~g~~~~~~~~~~-------------------~~~~~~~~G~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~  273 (334)
                      ++.||+||++. +..+....                   .....|..|+++.+...+.......   +--.|+|||++++
T Consensus       233 ~~~YG~TE~~~-~~~c~~~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~~r~~~---PliRYrtgD~~~~  308 (445)
T TIGR03335       233 YNTYGSTEGTM-CGECQAVAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKPGERCGS---LLINYDTEDTTVV  308 (445)
T ss_pred             EecCChhhhhh-eEEecCCCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCCCccCCc---eEEEeecCceEEE
Confidence            99999999863 22221100                   0123466677777776553211111   2336999999997


Q ss_pred             ec-CCc--------EEEEccCCceEEEcCEEeeeee
Q psy12107        274 DE-DGY--------FYIVDRTKELIKVKGNQVAPYK  300 (334)
Q Consensus       274 ~~-dg~--------~~~~GR~~d~i~~~G~~i~~~~  300 (334)
                      .. +.|        +...||.||+++++|.+|+|..
T Consensus       309 ~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~  344 (445)
T TIGR03335       309 ISRDRCPCGRTHMRILNPEREAETIWISGVPFNRVD  344 (445)
T ss_pred             ecCCCCCCCCCcceeCCCcccCceEEECCEEeCHHH
Confidence            32 221        4557999999999999999433

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.93  E-value=4.9e-25  Score=212.24  Aligned_cols=233  Identities=23%  Similarity=0.321  Sum_probs=183.0

Q ss_pred             CCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcE
Q psy12107         56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMH  135 (334)
Q Consensus        56 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~  135 (334)
                      ..+++++|++|||||||.||||..+|+++..........+       .....|+++...++.+...... ++.++..|++
T Consensus       363 ~~~~~~ayiiytsgstg~Pkgv~~~h~~~~~~~~~~~~~~-------~~~~~d~~l~~~s~~fD~~~~~-~f~~l~~G~~  434 (642)
T COG1020         363 LLGDALAYIIYTSGSTGQPKGVRIEHRALANLLNDAGARF-------GLDADDRVLALASLSFDASVFE-IFGALLEGAR  434 (642)
T ss_pred             CCCCCeEEEEEccCCCCCCCCceecCHHHHHHHHHHHHhc-------CCCcccEEeecCCcccchhHHH-HHHHHhCCCE
Confidence            4568999999999999999999999999988555554443       2667788999888866655555 7889999999


Q ss_pred             EEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCc--cccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107        136 MITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTP--EHLASIREVTCGAAPATKSLIDKFKQKVQREDI  210 (334)
Q Consensus       136 ~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~--~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~  210 (334)
                      +++.+.   .++..+.+.++++++|++..+|+++..+........  ...+.+|.+++||+.++.++.+.+...... ..
T Consensus       435 l~~~~~~~~~~~~~l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~-~~  513 (642)
T COG1020         435 LVLAPALLQVDPAALLELLEAQGITVLLLVPLLLRLLLLAALAPDLISPCERLRQLLSGGEALPLALVQRLLQLAAL-AR  513 (642)
T ss_pred             EEecCccccCCHHHHHHHHHHcCCEEEEecHHHHHHHHhchhhccccCCcccccEEEEcCCCCCHHHHHHHHHhccc-cc
Confidence            998875   689999999999999999999999999987622211  223358999999999999999998887642 34


Q ss_pred             ceeeccCCCCCCCcccccccCC------------------------CCccccCcccc------ccccccCCccccccccC
Q psy12107        211 TIRQGYGMTETSPCTLYTRFAI------------------------PEAKLGSTGQL------VMLGYLKNEEATKETVD  260 (334)
Q Consensus       211 ~i~~~YG~tE~g~~~~~~~~~~------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~  260 (334)
                      .+.|.||+||+...........                        .....+..|+.      +.+||+++|+.|.+.|.
T Consensus       514 ~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~  593 (642)
T COG1020         514 RLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFI  593 (642)
T ss_pred             eEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEECCCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhh
Confidence            7999999999654222111000                        01112222333      78999999999999996


Q ss_pred             CCCceecCceEEEecCCcEEEEccCCceEEEcCEEee
Q psy12107        261 SEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA  297 (334)
Q Consensus       261 ~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~  297 (334)
                      .+.+|+|||++++.+||.+.++||.|+++|++|.+|.
T Consensus       594 ~~~~y~tgD~~r~~~dg~~e~lgr~D~qvki~g~Rie  630 (642)
T COG1020         594 ALRLYRTGDLARPLADGALEYLGRKDSQVKIRGFRIE  630 (642)
T ss_pred             hccCccCCCeeeECCCCeEEEeccccceeEeceEecC
Confidence            5558999999999999999999999999999999985

>PTZ00297 pantothenate kinase; Provisional

Probab=99.92  E-value=1.1e-24  Score=218.81  Aligned_cols=260  Identities=13%  Similarity=0.142  Sum_probs=175.4

Q ss_pred             cchhhHHHHHHhhhCCCCceEEEEcCC---CC-C-----CCCccchhhhhcC-C-CCCCCCCCCCCCCEEEEec---CCC
Q psy12107          4 IPQLLEVGTKIGATLPNFRGTIVVGGE---HD-K-----SKNIFGFKQLVTS-Q-PPDFQLPKISPNDLAMLPY---SSG   69 (334)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~ii~~~~~---~~-~-----~~~~~~~~~ll~~-~-~~~~~~~~~~~~~~a~i~~---TSG   69 (334)
                      +.+.++++.++..  +.+++||++++.   .+ .     +...++|++++.. . ........++++|++.|+|   |||
T Consensus       534 ~~~~l~kl~~i~~--~~Lr~IIv~d~~~~~~~~~~~~~~~i~~~s~~~ll~~G~~~~~~~~~~~~~dDlatIiYtSyTSG  611 (1452)
T PTZ00297        534 DRNSVAAILTCRS--RKLETVVYTHSFYDEDDHAVARDLNITLIPYEFVEQKGRLCPVPLKEHVTTDTVFTYVVDNTTSA  611 (1452)
T ss_pred             chhHHHHHHhhcc--cCCcEEEEECCCcccccccccccCCcceeeHHHHHhcCcccCccccCCCCcccEEEEEecCCCCC
Confidence            3455566655543  479999999642   10 0     1125679999842 1 1111123457889999985   999


Q ss_pred             CCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHH
Q psy12107         70 TTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIE  149 (334)
Q Consensus        70 TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~  149 (334)
                      |||.||||++||+|+.++...........    ...++|++++.+|++|+++... .+.++..|+++..   +++..+++
T Consensus       612 TTG~PKGVmLTH~Nlla~~~~~~~~~~~~----~~~~~D~~Ls~LPLaHI~er~~-~~~~l~~G~~I~~---~d~~~lle  683 (1452)
T PTZ00297        612 SGDGLAVVRVTHADVLRDISTLVMTGVLP----SSFKKHLMVHFTPFAMLFNRVF-VLGLFAHGSAVAT---VDAAHLQR  683 (1452)
T ss_pred             CCcCCcEEEEeHHHHHHHHHHHhhhcccc----CCCCCCEEEEechHHHHHHHHH-HHHHHHcCCEEEe---CCHHHHHH
Confidence            99999999999999998887654321100    1356799999999999998654 5777889998864   47899999


Q ss_pred             HHHHcCCeEEeechHHHHHHhcCCC----CC----------------------ccc---------------c-ccceeee
Q psy12107        150 CVVKYKPTILFVVPSLLLFLASHPA----VT----------------------PEH---------------L-ASIREVT  187 (334)
Q Consensus       150 ~i~~~~~t~l~~~p~~l~~l~~~~~----~~----------------------~~~---------------~-~~lr~v~  187 (334)
                      .|++++||+++++|.++..+.....    ..                      ...               + .++|.++
T Consensus       684 dL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr~~i  763 (1452)
T PTZ00297        684 AFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVEKIV  763 (1452)
T ss_pred             HHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeEEEE
Confidence            9999999999999999987743210    00                      000               0 2577777


Q ss_pred             ecCC--CCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCCC----------Ccccc---------Cccccccc
Q psy12107        188 CGAA--PATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP----------EAKLG---------STGQLVML  246 (334)
Q Consensus       188 ~~G~--~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~----------~~~~~---------~~G~~~~~  246 (334)
                      +||.  +++..+..         .+++...||+||+..+   +.....          +.+..         ..|+++. 
T Consensus       764 sGga~~~l~~~l~~---------~i~i~~g~glTE~~~~---~~~~~~~~~G~PlpgvEvKI~~~~E~~~~~~~GEIlv-  830 (1452)
T PTZ00297        764 LCVSEESTSFSLLE---------HISVCYVPCLREVFFL---PSEGVFCVDGTPAPSLQVDLEPFDEPSDGAGIGQLVL-  830 (1452)
T ss_pred             ECCCccccChHHhC---------CceEEEecceEEeeee---cCCCCcccCCeecCceEEEEcccccccCCCCCCeEEE-
Confidence            7763  44433322         3467778999995422   111111          11111         2377666 


Q ss_pred             cccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEE-cCEEee
Q psy12107        247 GYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKV-KGNQVA  297 (334)
Q Consensus       247 gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~-~G~~i~  297 (334)
                      +|+++|+.|++.+  ++|+         +||.++++||+||+||+ +|++|+
T Consensus       831 r~~kdpe~T~e~~--~gW~---------~dG~L~IidRkKdlikls~GEyVa  871 (1452)
T PTZ00297        831 AKKGEPRRTLPIA--AQWK---------RDRTLRLLGPPLGILLPVAYEYVI  871 (1452)
T ss_pred             EECCChHHHHHhh--CcCc---------cCCeEEEEeccccceECCCCcEEc
Confidence            4668899888743  5665         69999999999999999 699999

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.90  E-value=4e-23  Score=181.45  Aligned_cols=230  Identities=21%  Similarity=0.201  Sum_probs=169.2

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ..++.++...|..||||||+|+-+.++...+..+...+.+.+...+    ...+|++..+.......+-.....++...|
T Consensus        85 ~~~~~~~i~~ihaSSGTTGkPt~~~~t~~D~~~wa~~~aR~~~~~g----~~~gd~v~~~~~yGl~tgg~~~~~ga~rig  160 (438)
T COG1541          85 FAVPKEEIVRIHASSGTTGKPTVFGYTAKDIERWAELLARSLYSAG----VRKGDKVQNAYGYGLFTGGLGLHYGAERIG  160 (438)
T ss_pred             ccccccceEEEEccCCCCCCceeeecCHHHHHHHHHHHHHHHHHcc----CCCCCEEEEEeeeccccCCchhHHHHHhhC
Confidence            3556678888999999999999999999998888777777664442    567777766655322222222255666688


Q ss_pred             cEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCc--cccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107        134 MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTP--EHLASIREVTCGAAPATKSLIDKFKQKVQREDIT  211 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~--~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~  211 (334)
                      ++++-...-+.+..+++|++++++++.++|+++..|++..+...  ..-.+||.+++|+|++++++++.+++.||+   .
T Consensus       161 ~~vip~~~g~~~~~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~~~~~~lk~~i~gaE~~see~R~~ie~~~g~---~  237 (438)
T COG1541         161 ATVIPISGGNTERQLELMKDFKPTVIAATPSYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRFGC---K  237 (438)
T ss_pred             EEEEccCCccHHHHHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCChhhcceeEEEEecccCCHHHHHHHHHHhCC---c
Confidence            88887766688999999999999999999999999998876553  344589999999999999999999999986   6


Q ss_pred             eeeccCCCCCCCcc-cccccCCC-------------------CccccCccccccccccCCccccccccCCCCceecCceE
Q psy12107        212 IRQGYGMTETSPCT-LYTRFAIP-------------------EAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVA  271 (334)
Q Consensus       212 i~~~YG~tE~g~~~-~~~~~~~~-------------------~~~~~~~G~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~  271 (334)
                      .++.||+||..+.. ..|.....                   ....|..|+++.+...+      ..+ +--.|+|||+.
T Consensus       238 ~~diYGltE~~g~g~~eC~~~~glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L~~------~~~-PlIRYrtgDit  310 (438)
T COG1541         238 AFDIYGLTEGFGPGAGECTERNGLHIWEDHFIFEIVDPETGEQLPDGERGELVITTLTK------EGM-PLIRYRTGDIT  310 (438)
T ss_pred             eeeccccccccCCcccccccccCCCcchhhceeeeecCCcCccCCCCCeeEEEEEeccc------cCc-ceEEEEcCCee
Confidence            79999999986552 22222110                   01122333443333321      111 33369999999


Q ss_pred             EEecCCc---------EEEEccCCceEEEcCEEee
Q psy12107        272 YYDEDGY---------FYIVDRTKELIKVKGNQVA  297 (334)
Q Consensus       272 ~~~~dg~---------~~~~GR~~d~i~~~G~~i~  297 (334)
                      ++.++-|         ..+.||.+|++++.|.+|+
T Consensus       311 ~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vf  345 (438)
T COG1541         311 VILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVF  345 (438)
T ss_pred             EecccCCCCCCccccccccCcccccEEEECCEEeC
Confidence            9977422         4689999999999999999

>KOG1178|consensus

Probab=99.82  E-value=1.8e-19  Score=173.36  Aligned_cols=262  Identities=21%  Similarity=0.264  Sum_probs=177.4

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecch-hhhhHHHHHHHHHHHhC
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPF-FHIYGFNGILNVVMMYG  133 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~G  133 (334)
                      ...++..+.+.||||+||.||+|.-+|..+.....++...+       .....+.+ ...+. +.+-.........+..|
T Consensus       192 ~~~~ds~~~l~~tSgs~G~pk~v~~~~~sl~~~fdw~~~~f-------~~t~s~~~-~~~~~~~~~d~i~~~~~~~L~~~  263 (1032)
T KOG1178|consen  192 VGGNDSTALLSFTSGSTGVPKGVAGTHFSLANAFDWMFTTF-------PPTGSDRF-TFKTSVYFDDTIQKFIGALLFNG  263 (1032)
T ss_pred             eecccccceEeecccccccccccchhHHHHHhhhhhccccC-------CcCccchh-hhhheeecccchHHHHhhHhhcC
Confidence            44567788999999999999999999999988877766554       23444443 22221 11112222234455566


Q ss_pred             cEEEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCC-------------ccccccceeeeecCCCCCHHH
Q psy12107        134 MHMITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVT-------------PEHLASIREVTCGAAPATKSL  197 (334)
Q Consensus       134 ~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~-------------~~~~~~lr~v~~~G~~l~~~~  197 (334)
                      +.+..+..   -.+.++.+.+++++++..+.+|++.++++......             ....+.|+...++|++....+
T Consensus       264 ~~l~~p~~~~~~~~~~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l  343 (1032)
T KOG1178|consen  264 NNLLVPTATIKDTPGQLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSL  343 (1032)
T ss_pred             ceeecccccCccchhhHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccchhh
Confidence            65555433   24789999999999999999999977776543321             112347899999999999999


Q ss_pred             HHHHHHHhccCCCceeeccCCCCCCCcccccccCCC------------------------------Cccc--cCcccc--
Q psy12107        198 IDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP------------------------------EAKL--GSTGQL--  243 (334)
Q Consensus       198 ~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~------------------------------~~~~--~~~G~~--  243 (334)
                      .-.+.+.+..  .-...-|+++|..+..........                              ....  +.+|..  
T Consensus       344 ~~s~~~~~~~--~~~~~~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l  421 (1032)
T KOG1178|consen  344 YTSTFDLLAE--IFFGLPYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLYRAGGEGEGGVGKGCL  421 (1032)
T ss_pred             hhhhhhcccc--eeeeecccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeeeccCcccCCcccceee
Confidence            9877666653  234445888886654432111100                              0000  011111  


Q ss_pred             ---------ccccccCCcccccccc-----CCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee------------
Q psy12107        244 ---------VMLGYLKNEEATKETV-----DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA------------  297 (334)
Q Consensus       244 ---------~~~gy~~~~~~~~~~~-----~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~------------  297 (334)
                               +..| +..++.....+     ..+..|+|||.++..++|.+.+.||.|++||.+|.++.            
T Consensus       422 ~~~~~~~~~~~~g-~~~~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p  500 (1032)
T KOG1178|consen  422 GAEQNLSSWVVDG-YSTPENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHP  500 (1032)
T ss_pred             cccccccceeecc-ccchhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCc
Confidence                     2233 22333322222     12447999999999999999999999999999999999            


Q ss_pred             ----------------------------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhh
Q psy12107        298 ----------------------------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVF  328 (334)
Q Consensus       298 ----------------------------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~  328 (334)
                                                                    +++.|.. ++.++++|.|++||||+++|.+.
T Consensus       501 ~v~~~itl~~~~~~~~~~l~aFvv~~~~~~~~~~~~i~~~l~~~La~y~vPs~-~V~l~~vPl~~~GKvDkkaL~~~  576 (1032)
T KOG1178|consen  501 DVKEAITLARENSTVGQTLLAFVVERGGSKSVLIRDIRNYLKKELASYMLPSL-VVPLAKVPLNPNGKVDKKALLEY  576 (1032)
T ss_pred             chhhhheeeeeccccCceEEEEEeccCCCCchhHHHHHHhhcccccceecceE-EEEhhhCCcCCCCCcChhhhhhh
Confidence                                                          6667776 99999999999999999999883

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.75  E-value=2.7e-17  Score=148.22  Aligned_cols=213  Identities=15%  Similarity=0.091  Sum_probs=132.5

Q ss_pred             EEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEec-chhhhhHHHHHHHHHHHhCcE-EEE
Q psy12107         61 LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVL-PFFHIYGFNGILNVVMMYGMH-MIT  138 (334)
Q Consensus        61 ~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~G~~-~~~  138 (334)
                      -..+..||||||.|-.+..+......+...........    +...++++.... .-.+.       ...+..... +-.
T Consensus       101 ~~~v~~TSGSSG~p~~f~~~~~~~~~~~a~~~~~~~~~----g~~~g~r~a~~~~~~~~l-------y~~~~~~~~~~~~  169 (430)
T TIGR02304       101 NISVGLSSGTSGRRGLFVVSPEEQQMWAGGILAKVLPD----GLFAKHRIAFFLRADNNL-------YQSVNNRWISLDF  169 (430)
T ss_pred             cEEEEECCCCCCCceEEEECHHHHHHHHHHHHhhhCcc----ccccCCcEEEEEccChhH-------HHHHHhccceeee
Confidence            45677899999999999988887654433332222211    123333333331 11111       111211111 111


Q ss_pred             cC-CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccC
Q psy12107        139 IP-KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYG  217 (334)
Q Consensus       139 ~~-~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG  217 (334)
                      .+ ..+.+.+++.|++++|+++.++|+.+..|++..+....+ ..++.|+++||.++++.++.+++.||+   ++++.||
T Consensus       170 ~~l~~~~~~~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg~---~V~~~YG  245 (430)
T TIGR02304       170 FDLLAPFQAHIKRLNQRKPSIIVAPPSVLRALALEVMEGELT-IKPKKVISVAEVLEPQDRELIRNVFKN---TVHQIYQ  245 (430)
T ss_pred             cCCCcCHHHHHHHHHHhCCCEEEEcHHHHHHHHHHHHhcCCC-CCceEEEEccCCCCHHHHHHHHHHhCC---CeeEccC
Confidence            11 146889999999999999999999999999865443333 478999999999999999999999986   7999999


Q ss_pred             CCCCCCcccccccCCC---------Cc-cccCcc--ccccccccCCccccccccCCCCceecCceEEEecC----Cc---
Q psy12107        218 MTETSPCTLYTRFAIP---------EA-KLGSTG--QLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDED----GY---  278 (334)
Q Consensus       218 ~tE~g~~~~~~~~~~~---------~~-~~~~~G--~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~d----g~---  278 (334)
                      +|| |.++..+..+.-         +. ..+..|  .++.+.+.+...       |--.|+|||++.+.++    |.   
T Consensus       246 ~tE-g~la~eC~~g~lHl~ed~~~vE~~ivD~~~~~~~ViT~L~n~~~-------PlIRYrtGD~~~~~~~~C~CGr~~~  317 (430)
T TIGR02304       246 ATE-GFLASTCRCGTLHLNEDLVHIEKQYLDEHKRFVPIITDFTRTTQ-------PIVRYRLNDILVESEQPCSCGSATM  317 (430)
T ss_pred             Cch-hheEEecCCCCEEEccccEEEEeeEECCCCceEEEEecCCCccc-------eEEeeeCCCEEEeCCCCCCCCCccc
Confidence            999 555444432210         00 011111  123333322111       2335999999988554    22   


Q ss_pred             -E-EEEccCCceEEE---cCEEe
Q psy12107        279 -F-YIVDRTKELIKV---KGNQV  296 (334)
Q Consensus       279 -~-~~~GR~~d~i~~---~G~~i  296 (334)
                       + .+.||.+|++++   +|..+
T Consensus       318 ~i~~I~GR~dD~l~~~~~~G~~v  340 (430)
T TIGR02304       318 AIERIEGRQDDIFQLITRSGDEQ  340 (430)
T ss_pred             ccCCccCccCCEEEEecCCCCeE
Confidence             3 388999999985   35554

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.40  E-value=3.8e-13  Score=118.78  Aligned_cols=64  Identities=30%  Similarity=0.493  Sum_probs=57.2

Q ss_pred             CCCceecCceEEE-ecCCcEEEEccCCceEEEcC---EEee---------------------------------------
Q psy12107        261 SEGWLHTGDVAYY-DEDGYFYIVDRTKELIKVKG---NQVA---------------------------------------  297 (334)
Q Consensus       261 ~~~~~~TGD~~~~-~~dg~~~~~GR~~d~i~~~G---~~i~---------------------------------------  297 (334)
                      .+|||+|||+|++ |+||++++.||.+     +|   ++|+                                       
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~~  281 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPAIQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAELP  281 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCC
Confidence            6899999999998 6999999999998     77   6777                                       


Q ss_pred             ---------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 ---------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 ---------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                     + ++|.. |.++++||+|++|||+|++|++...+
T Consensus       282 ~~~~el~~~l~~~L~~-kvP~~-v~~v~~lP~t~~GKi~R~~Lr~~~~~  328 (365)
T PRK09188        282 ADEKSLRARLAGAKPP-KPPEH-IQPVAALPRDADGTVRDDILRLIAMN  328 (365)
T ss_pred             CCHHHHHHHHHhhchh-cCCcE-EEEECCCCCCCCCCccHHHHHHHhhc
Confidence                           5 77777 99999999999999999999987643

>TIGR03089 conserved hypothetical protein TIGR03089

Probab=99.25  E-value=5.3e-11  Score=99.24  Aligned_cols=101  Identities=13%  Similarity=0.117  Sum_probs=76.9

Q ss_pred             CccchhhhhcCCCCCCCCC-CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEec
Q psy12107         36 NIFGFKQLVTSQPPDFQLP-KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVL  114 (334)
Q Consensus        36 ~~~~~~~ll~~~~~~~~~~-~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  114 (334)
                      +..+|.+.+.......... .++++|++.|+||||+         +|+++..+.    ...       ...++|+++ .+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~D~a~l~yTsg~---------~~~~~~~~~----~~~-------~l~~~D~~l-~~  184 (227)
T TIGR03089       126 GVIDFAPEVRVHGDQFAPYEPPDATAPALVAGGGEW---------TGAELVAAA----RAA-------GLPPGDRVL-VL  184 (227)
T ss_pred             cccchhhhhhccCCCCCCCCCCCCCcceeeeccccc---------cHHHHHHHH----hhc-------CCCCCCeEE-ec
Confidence            3456766664222222112 4567999999999986         555554443    111       267889999 99


Q ss_pred             chhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCe
Q psy12107        115 PFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPT  157 (334)
Q Consensus       115 p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t  157 (334)
                      |++|++|+...++.++..|+++++.++|+++.+++.|++++||
T Consensus       185 Pl~H~~gl~~~~~~~l~~G~t~v~~~rFd~~~~l~~i~~~~vT  227 (227)
T TIGR03089       185 AWTDLEDFLATLLAPLAAGGSLVLVTHPDPARLDQIAETERVT  227 (227)
T ss_pred             CCCchHHHHHHHHHHhccCceEEEecCCCHHHHHHHHHhhcCC
Confidence            9999999988899999999999999999999999999999987

This protein family is found, so far, only in the Actinobacteria (Streptomyces, Mycobacterium, Corynebacterium, Nocardia, Propionibacterium, etc.) and never more than one to a genome. Members show twilight-level sequence similarity to family of AMP-binding enzymes described by Pfam model pfam00501.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=98.99  E-value=1.4e-08  Score=90.07  Aligned_cols=170  Identities=16%  Similarity=0.162  Sum_probs=94.3

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhH-H---HHHHHHHH
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYG-F---NGILNVVM  130 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~---~~~~~~~~  130 (334)
                      ..+++++..++.||||||.|--+.+.+..+..+...+...+.....  .....-.++...|-..... +   ........
T Consensus        85 S~~~e~~~~~~tSSGTtG~~S~i~~D~~t~~~~~~~~~~~~~~~~~--~~~~~~~il~l~p~~~~~~~~~~~~~~~~~~~  162 (365)
T PF04443_consen   85 SVPEEEVEKVFTSSGTTGQPSRIFRDRETAERQQKSLNKIFQHFLG--PSRLPMLILDLSPSPENRNSFSARYAGILGEL  162 (365)
T ss_pred             ecChhhheeEEECCCCCCCCcEEEECHHHHHHHHHHHHHHHHhhcc--cccCCeEEEEecCCcccccchHHHHHHHHhhc
Confidence            4456778889999999999865656555555444333222211100  0112223334334321111 1   11111222


Q ss_pred             HhCcEEEEcC--CCCHHHHHHHHH----HcCCeEEeechHHHHHHhcCCCCCcc--ccc-cceeeeecC------CCCC-
Q psy12107        131 MYGMHMITIP--KFTPETYIECVV----KYKPTILFVVPSLLLFLASHPAVTPE--HLA-SIREVTCGA------APAT-  194 (334)
Q Consensus       131 ~~G~~~~~~~--~~~~~~~~~~i~----~~~~t~l~~~p~~l~~l~~~~~~~~~--~~~-~lr~v~~~G------~~l~-  194 (334)
                      ..+.. ....  .++.+.+++.+.    +.++..++++|.++..+....+....  .++ ..+.+..||      +.++ 
T Consensus       163 ~~~~~-~~l~~~~ld~~~~~~~L~~~~~~~~pv~l~Gftf~~~~~~~~l~~~~~~~~L~~~s~vi~~GGwK~~~~e~v~r  241 (365)
T PF04443_consen  163 FFGSR-FALDNDELDLEGLIEALFRAEHSGEPVLLFGFTFFIWFLLDELEERGIRFRLPKGSIVIHGGGWKGRRKEAVSR  241 (365)
T ss_pred             ccCce-eeecCCccCHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHHhcCCcccCCCCCEEEeCCCCCccccCccCH
Confidence            33444 3333  256776666553    56789999999877766654333322  333 345555555      4575 


Q ss_pred             HHHHHHHHHHhcc-CCCceeeccCCCCCCCcccc
Q psy12107        195 KSLIDKFKQKVQR-EDITIRQGYGMTETSPCTLY  227 (334)
Q Consensus       195 ~~~~~~~~~~~~~-~~~~i~~~YG~tE~g~~~~~  227 (334)
                      +++.+.+++.||. +.-.+++.||+||.......
T Consensus       242 ~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~  275 (365)
T PF04443_consen  242 EEFYARLQEVFGVIPIENIYDMYGMTELNSQAYE  275 (365)
T ss_pred             HHHHHHHHHHHCCCCHHHeeeeeeccccchhhee
Confidence            5778888898985 33479999999997654443

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>KOG3628|consensus

Probab=98.67  E-value=1.6e-06  Score=83.64  Aligned_cols=270  Identities=16%  Similarity=0.179  Sum_probs=170.5

Q ss_pred             CCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcE
Q psy12107         56 ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMH  135 (334)
Q Consensus        56 ~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~  135 (334)
                      ...+.+|++-+.--++|.--++.++|.++++-+........       +.+..-++.+.++....|+...++...+.|..
T Consensus       940 ~~k~~~a~v~~~~~~dg~l~~~~msHsslla~Ck~iKe~~~-------l~~~rpl~~~~~~~sGlgf~~wcLlgVysGh~ 1012 (1363)
T KOG3628|consen  940 NNKETPALVWFNVSTDGMLIGVKMSHSSLLAFCKIIKETCQ-------LYKSRPLLGCSSPYSGLGFNHWCLLGVYSGHP 1012 (1363)
T ss_pred             cCCCceEEEEEEecCCcceeeeeccHHHHHHHHHHHHHHHc-------cccCCceEEEecCccchhHHHHHHHHHHcCCc
Confidence            34678999988888999999999999999988776665442       44566677777777778888888888899999


Q ss_pred             EEEcCC----CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccc------eeeeecCCCCCHHHHHHHHHHh
Q psy12107        136 MITIPK----FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASI------REVTCGAAPATKSLIDKFKQKV  205 (334)
Q Consensus       136 ~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~l------r~v~~~G~~l~~~~~~~~~~~~  205 (334)
                      .++.++    .++..+++.|+++++.-.+..-+.+..+....+....+++..      ..++..-+.-...+.+.+.+.|
T Consensus      1013 T~Li~p~~l~nnpsLll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~s~vv~~~~RPr~ali~sf~klf 1092 (1363)
T KOG3628|consen 1013 TLLISPMDLENNPSLLLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSSSIVVPAEERPRIALIASFKKLF 1092 (1363)
T ss_pred             eeecCHHHhhcCHHHHHHHHhcccccccchhHHHHHHHHhccccccchhhhhhcccccceeeecCCccHHHHHHHHHHHH
Confidence            887764    489999999999999998888777777765544333332211      2222233333445566666655


Q ss_pred             ccCCC---ceeeccCCCCCCCcc--------------------------------------------------cccccCC
Q psy12107        206 QREDI---TIRQGYGMTETSPCT--------------------------------------------------LYTRFAI  232 (334)
Q Consensus       206 ~~~~~---~i~~~YG~tE~g~~~--------------------------------------------------~~~~~~~  232 (334)
                      -..+.   .+--.|++-=--.++                                                  ..+++..
T Consensus      1093 a~igLsp~avStsys~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk 1172 (1363)
T KOG3628|consen 1093 AAIGLSPRAVSTSYSSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETK 1172 (1363)
T ss_pred             HHcCCChhhhcccccccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCccc
Confidence            21110   122222222111111                                                  1111111


Q ss_pred             CCccccCcccccc------ccccCCcc-cccccc---------CCCCceecCceEEEec------C----CcEEEEccCC
Q psy12107        233 PEAKLGSTGQLVM------LGYLKNEE-ATKETV---------DSEGWLHTGDVAYYDE------D----GYFYIVDRTK  286 (334)
Q Consensus       233 ~~~~~~~~G~~~~------~gy~~~~~-~~~~~~---------~~~~~~~TGD~~~~~~------d----g~~~~~GR~~  286 (334)
                      .+...+..|+..+      .+|++-.+ .....|         ....|-||||+|+..-      +    .-+|++|-.+
T Consensus      1173 ~pc~dge~GEIW~~S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~ 1252 (1363)
T KOG3628|consen 1173 GPCRDGELGEIWVNSAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAID 1252 (1363)
T ss_pred             cccccCCcceEEeccccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeeccc
Confidence            1223344444422      22332111 111111         2457999999999732      2    3489999999


Q ss_pred             ceEEEcCEEee----------------------------------------------------eeeeccCcEEEee--cC
Q psy12107        287 ELIKVKGNQVA----------------------------------------------------PYKKLAGGVKFLE--TI  312 (334)
Q Consensus       287 d~i~~~G~~i~----------------------------------------------------~~~~~~~~i~~v~--~l  312 (334)
                      +.+.++|.+-+                                                    .+...-+-+.||+  .+
T Consensus      1253 EtlEl~GL~h~p~DIE~TV~~vH~~I~~cavF~~~glvVvviE~~gq~~~~~LvPlIv~~vL~eH~iI~dvV~fV~~G~~ 1332 (1363)
T KOG3628|consen 1253 ETLELNGLRHFPSDIETTVERVHPSIGGCAVFQATGLVVVVIECHGQQELADLVPLIVNVVLEEHYIILDVVAFVDKGVF 1332 (1363)
T ss_pred             ceeeecCcccCcchHHHHHHHhcccccceeeEeeCCeEEEEEEecCchhHhhhhHHHHHHHHhhcceEEEEEEEecCCcc
Confidence            99999999887                                                    2222223277777  49


Q ss_pred             CCCCCchhhHHHHhhhhcCC
Q psy12107        313 PRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       313 P~t~~GKi~r~~l~~~~~~~  332 (334)
                      |+++.|.-+|..+++.....
T Consensus      1333 p~~~~gEK~R~~I~~~w~~~ 1352 (1363)
T KOG3628|consen 1333 PRNSRGEKQRAHILDSWLAG 1352 (1363)
T ss_pred             ccCCchhhHHHHHHHHHHhc
Confidence            99999999999999876543

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=98.00  E-value=8.8e-07  Score=82.96  Aligned_cols=115  Identities=15%  Similarity=0.195  Sum_probs=58.8

Q ss_pred             cccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCCCCccc--cCc-----------------
Q psy12107        180 LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKL--GST-----------------  240 (334)
Q Consensus       180 ~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~--~~~-----------------  240 (334)
                      -|.|+.|.+-+..-.....+.+++.+|. -..+...|++||+- + ..+.........  -..                 
T Consensus       266 WP~L~~v~~~~~g~~~~y~~~l~~~~g~-~~~~~~~y~ASEg~-i-~i~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~  342 (528)
T PF03321_consen  266 WPNLKLVSCWGGGSMAPYAPKLREYFGG-VPIQSKGYGASEGF-I-GIPLDPEDPGYVLAPDSGFFEFIPVDEDEQNPSE  342 (528)
T ss_dssp             STT--EEEEE-SGGGGGGHHHHHHHHTT-S-EEE-EEEETTEE-E-EEES-CCC--EEE-TTSSEEEEEE-STT------
T ss_pred             CCCCcEEEEEcCCChHHHHHHHHHHcCC-CceeeccccccceE-E-EEecCCCCCceEeecCCeEEEEEeccCCcccccC
Confidence            4688877776666567788999999983 22344699999963 2 222211100000  000                 


Q ss_pred             -cccccccccCCcccccccc-CCCC--ceecCceEEEec--CC--cEEEEccCCceEEEcCEEee
Q psy12107        241 -GQLVMLGYLKNEEATKETV-DSEG--WLHTGDVAYYDE--DG--YFYIVDRTKELIKVKGNQVA  297 (334)
Q Consensus       241 -G~~~~~gy~~~~~~~~~~~-~~~~--~~~TGD~~~~~~--dg--~~~~~GR~~d~i~~~G~~i~  297 (334)
                       +..+...-....+...-.+ +..|  .|+.||+++...  ++  .+.|+||.+.++.+.|++++
T Consensus       343 ~~~~l~~~ele~G~~YelviTt~~GLyRY~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~  407 (528)
T PF03321_consen  343 QPKTLLLHELEVGEEYELVITTNSGLYRYRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLS  407 (528)
T ss_dssp             -SSSEEGGG--TT-EEEEEEESTTS-SSEEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EE
T ss_pred             CCceecHHHhcCCCeEEEEEecccceeeeecCCEEEEeeccCCCcEEEEeccCCceeecceeecC
Confidence             0010000000000000001 1233  399999999853  34  79999999999999999999

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>KOG3628|consensus

Probab=97.68  E-value=0.0002  Score=69.71  Aligned_cols=144  Identities=14%  Similarity=0.111  Sum_probs=105.6

Q ss_pred             EEEEecCCCCCCCchhhhhcchHHHHHhhhhccCc-------ccc------CCCCCCCCCceEEEecchhhhhHHHHHHH
Q psy12107         61 LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPD-------IVN------HIPTSDTSQETVLSVLPFFHIYGFNGILN  127 (334)
Q Consensus        61 ~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~-------~~~------~~~~~~~~~~~~l~~~p~~~~~~~~~~~~  127 (334)
                      ..+|-||++++|.--|++++|+ +..++..+....       ..+      .........+.++.........|+..+++
T Consensus       252 ~~~i~~t~s~l~~~~g~V~~~~-~~~q~r~~~~~~nt~Pa~~~~~~~~~~~~~v~~~~~~~~~l~~~~~s~~lGlilGV~  330 (1363)
T KOG3628|consen  252 YGYIEFTRSPLGNLIGVVYKHK-FLPQMRVLTSIPNTNPARFAAAFYGCLHAHVFPVPSEDVLLTNLDPSQQLGLILGVL  330 (1363)
T ss_pred             eEEEEEeccchhceeeeEeecc-cccchhhhhhccCcChHHHHHhhhcchhhhccccCcccceeeccCcccccchhhhhh
Confidence            7899999999999999999998 555443332210       000      00011234566677777777788888899


Q ss_pred             HHHHhCcEEEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCC-----------ccccccceeeeecCCCC
Q psy12107        128 VVMMYGMHMITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVT-----------PEHLASIREVTCGAAPA  193 (334)
Q Consensus       128 ~~~~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~-----------~~~~~~lr~v~~~G~~l  193 (334)
                      .++..|.+.+.++.   +.|..+.+++-++|.+++..--..+++.....+..           -.++++||.+++.-..+
T Consensus       331 ~alfsg~c~i~~p~~~l~~pG~~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~C~Vtc~~v  410 (1363)
T KOG3628|consen  331 VALFSGYCTIGCPKEVLKPPGLIANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSSLKGCMVTCTAV  410 (1363)
T ss_pred             hhhhcCceeecCchhhcCCCcchhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCccceeeeEEeeeec
Confidence            99999999999987   67889999999999999988766666655433321           13678999999999999


Q ss_pred             CHHHHHHHHHHh
Q psy12107        194 TKSLIDKFKQKV  205 (334)
Q Consensus       194 ~~~~~~~~~~~~  205 (334)
                      ..+..+...++|
T Consensus       411 d~~~~~ivs~~w  422 (1363)
T KOG3628|consen  411 DTEFQEIVSDRW  422 (1363)
T ss_pred             chHHHHHHHHhh
Confidence            999888777766

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=97.59  E-value=0.00047  Score=65.26  Aligned_cols=33  Identities=15%  Similarity=0.344  Sum_probs=29.6

Q ss_pred             eecCceEEEec----CCcEEEEccCCceEEEcCEEee
Q psy12107        265 LHTGDVAYYDE----DGYFYIVDRTKELIKVKGNQVA  297 (334)
Q Consensus       265 ~~TGD~~~~~~----dg~~~~~GR~~d~i~~~G~~i~  297 (334)
                      |+.||++++..    --.|.|+||.+.++.+.|+++.
T Consensus       410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~  446 (597)
T PLN02249        410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTD  446 (597)
T ss_pred             eecCCEEEEeeccCCCcEEEEEccCCcceecccccCC
Confidence            99999999854    2469999999999999999999

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=97.21  E-value=0.0082  Score=56.74  Aligned_cols=34  Identities=15%  Similarity=0.322  Sum_probs=30.0

Q ss_pred             ceecCceEEEe----cCCcEEEEccCCceEEEcCEEee
Q psy12107        264 WLHTGDVAYYD----EDGYFYIVDRTKELIKVKGNQVA  297 (334)
Q Consensus       264 ~~~TGD~~~~~----~dg~~~~~GR~~d~i~~~G~~i~  297 (334)
                      .||.||+.+..    .-..+.|++|.+.+..+.|+++.
T Consensus       416 RYrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~t  453 (606)
T PLN02247        416 RYRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTN  453 (606)
T ss_pred             EEecCCEEEEeeecCCCceEEEEecCCceeecccccCC
Confidence            49999999984    34679999999999999999999

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=96.72  E-value=0.011  Score=55.85  Aligned_cols=34  Identities=15%  Similarity=0.283  Sum_probs=30.0

Q ss_pred             ceecCceEEEe----cCCcEEEEccCCceEEEcCEEee
Q psy12107        264 WLHTGDVAYYD----EDGYFYIVDRTKELIKVKGNQVA  297 (334)
Q Consensus       264 ~~~TGD~~~~~----~dg~~~~~GR~~d~i~~~G~~i~  297 (334)
                      .||.||+.+..    ....+.|++|.+.+..+.|+++.
T Consensus       422 RYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~t  459 (612)
T PLN02620        422 RYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTD  459 (612)
T ss_pred             EEecCCEEEEeeecCCCceEEEEeecCceeecccccCC
Confidence            39999999984    34679999999999999999999

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=89.54  E-value=0.098  Score=34.81  Aligned_cols=23  Identities=35%  Similarity=0.895  Sum_probs=16.1

Q ss_pred             eeeeeeccCcEEEe--ec-CCCCCCch
Q psy12107        296 VAPYKKLAGGVKFL--ET-IPRNPAGK  319 (334)
Q Consensus       296 i~~~~~~~~~i~~v--~~-lP~t~~GK  319 (334)
                      +.+++.|+. +.++  ++ ||+|++||
T Consensus        48 l~~~~~P~~-~~~v~~~~~lP~t~~GK   73 (73)
T PF13193_consen   48 LPPYMVPRR-IRFVRLDEELPRTPSGK   73 (73)
T ss_dssp             S-GGGS-SE-EEEEEESSSEEBETTSS
T ss_pred             CCCcceeeE-EEEccccCcCCCCCCCC
Confidence            558888853 5555  66 99999998

...

>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins

Probab=80.54  E-value=21  Score=29.03  Aligned_cols=90  Identities=20%  Similarity=0.303  Sum_probs=55.4

Q ss_pred             CCceEEEecch-hhhhHHHHHHHHHHHhCcEEEEcC-CCCHHHHHHHHHHcCCeEEeechHH------HHHHhcCCCCCc
Q psy12107        106 SQETVLSVLPF-FHIYGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKPTILFVVPSL------LLFLASHPAVTP  177 (334)
Q Consensus       106 ~~~~~l~~~p~-~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~~p~~------l~~l~~~~~~~~  177 (334)
                      ...+++.+.+- .|..|........-..|..++... ...++++.+.+++++++++...-++      +..+.+..+...
T Consensus        82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~  161 (201)
T cd02070          82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAG  161 (201)
T ss_pred             CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCC
Confidence            34556666663 888887764444447888887654 4678999999999999988765432      222222221111


Q ss_pred             cccccceeeeecCCCCCHHH
Q psy12107        178 EHLASIREVTCGAAPATKSL  197 (334)
Q Consensus       178 ~~~~~lr~v~~~G~~l~~~~  197 (334)
                       ....+ .|++||.+++++.
T Consensus       162 -~~~~~-~i~vGG~~~~~~~  179 (201)
T cd02070         162 -LRDKV-KVMVGGAPVNQEF  179 (201)
T ss_pred             -CCcCC-eEEEECCcCCHHH
Confidence             01123 3778888888753

A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	334
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		4e-39
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		5e-38
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		7e-38
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		2e-37
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-37
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		3e-37
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		1e-36
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		1e-36
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-36
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		1e-36
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		4e-25
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		2e-21
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		7e-20
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		1e-19
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		2e-18
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		2e-18
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		2e-18
3t5b_A	396	Crystal Structure Of N-Terminal Domain Of Facl13 Fr		1e-16
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		1e-16
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		3e-15
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		5e-14
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		1e-13
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		1e-12
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		2e-12
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		4e-12
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		6e-12
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		1e-11
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		1e-11
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		1e-11
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		5e-11
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		5e-11
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		2e-10
1amu_A	563	Phenylalanine Activating Domain Of Gramicidin Synth		4e-07
3vnq_A	544	Co-crystal Structure Of Nrps Adenylation Protein Cy		6e-07
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		6e-07
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		8e-07
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		4e-06
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		8e-06
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		2e-05
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		2e-05
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		2e-05
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		2e-05
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		2e-05
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		2e-05
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		5e-05
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		1e-04
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		1e-04
4gr5_A	570	Crystal Structure Of Slgn1deltaasub In Complex With		2e-04
3e53_A	480	Crystal Structure Of N-Terminal Domain Of A Fatty A		5e-04
3t5a_A	480	Crystal Structure Of N-Terminal Domain Of Faal28 G3		7e-04

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score =  158 bits (399), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 107/296 (36%), Positives = 151/296 (51%), Gaps = 45/296 (15%)
Query: 40  FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV---HPDI 96
           F +L  +   +     ISP+D+  LPYSSGTTG+PKGV L+H     ++ Q V   +P++
Sbjct: 159 FSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNL 218
Query: 97  VNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKP 156
             H      S++ +L VLP FHIY  N I+   +  G  ++ +PKF   + +  + KYK 
Sbjct: 219 YFH------SEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKV 272
Query: 157 TILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGY 216
           +I  VVP +++ +A  P +    L+S+R +  G AP  K L D  + K  +    + QGY
Sbjct: 273 SIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA--RLGQGY 330
Query: 217 GMTETSP----CTLYTR--FAIPEAKLGST----------------------------GQ 242
           GMTE  P    C  + +  F I     G+                             G 
Sbjct: 331 GMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGD 390
Query: 243 LVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
            +M GYL + EAT  T+D EGWLHTGD+ Y D+D   +IVDR KELIK KG QVAP
Sbjct: 391 QIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAP 446

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score =  154 bits (390), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 94/267 (35%), Positives = 137/267 (51%), Gaps = 37/267 (13%)
Query: 62  AMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYG 121
           A++  SSG+TG+PKGV+L+H N  V    C  P   N I   DT+   +L+V+PF H +G
Sbjct: 227 ALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQI-IPDTA---ILTVIPFHHGFG 282
Query: 122 FNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLA 181
               L   +  G  ++ + +F  E ++  +  YK     +VP+L  F A    V    L+
Sbjct: 283 MFTTLG-YLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDKYDLS 341
Query: 182 SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYT---RFAIPEA--- 235
           ++ E+  G AP  K + +   ++ +     IRQGYG+TET+   + T   R   P A   
Sbjct: 342 NLHEIASGGAPLAKEVGEAVAKRFKLPG--IRQGYGLTETTSAIIITPRGRDDKPGACGK 399
Query: 236 ------------------------KLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVA 271
                                   +L   G ++M GY+ N EAT   +D +GWLH+GD+A
Sbjct: 400 VVPFFSAKIVDLDTGKTLGVNQRGELCVKGPMIMKGYVNNPEATSALIDKDGWLHSGDIA 459
Query: 272 YYDEDGYFYIVDRTKELIKVKGNQVAP 298
           YYD+DGYF+IVDR K LIK KG QV P
Sbjct: 460 YYDKDGYFFIVDRLKSLIKYKGYQVPP 486

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score =  154 bits (389), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 106/306 (34%), Positives = 154/306 (50%), Gaps = 46/306 (15%)
Query: 32  DKSKNIFGFKQL---VTSQ-PPDFQ----LPKISPND--LAMLPYSSGTTGVPKGVKLSH 81
           D   +  GF+ +   VTS  PP F     +P+    D  +A++  SSG+TG+PKGV L H
Sbjct: 158 DSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 217
Query: 82  NNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK 141
              AV       P   N I   DT+   +LSV+PF H +G    L   ++ G  ++ + +
Sbjct: 218 RALAVRFSHARDPIFGNQI-APDTA---ILSVVPFHHGFGMFTTLGY-LISGFRVVLMYR 272
Query: 142 FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKF 201
           F  E ++  +  YK     +VP+L  FLA    +    L+++ E+  G AP +K + +  
Sbjct: 273 FEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAV 332
Query: 202 KQKVQREDITIRQGYGMTETSPCTLYT----------RFAIP--EAK------------- 236
            ++       IRQGYG+TET+   L T             +P  EAK             
Sbjct: 333 AKRFHLPG--IRQGYGLTETTSAILITPKGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVN 390
Query: 237 ----LGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
               L   G ++M GY+ N EAT   +D +GWLH+GD+AY+DED +F+IVDR K LIK K
Sbjct: 391 QRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYK 450
Query: 293 GNQVAP 298
           G QVAP
Sbjct: 451 GCQVAP 456

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score =  152 bits (385), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/281 (37%), Positives = 142/281 (50%), Gaps = 45/281 (16%)
Query: 55  KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV---HPDIVNHIPTSDTSQETVL 111
           +ISP+D+  LPYSSGTTG+PKGV L+H     ++ Q V   +P++  H      S + +L
Sbjct: 221 EISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFH------SDDVIL 274
Query: 112 SVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLAS 171
            VLP FHIY  N I+   +  G  ++ +PKF     +E + + K T+  +VP ++L +A 
Sbjct: 275 CVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAK 334
Query: 172 HPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP-------- 223
                   L+SIR V  GAAP  K L D    K    +  + QGYGMTE  P        
Sbjct: 335 SSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKF--PNAKLGQGYGMTEAGPVLAMSLGF 392
Query: 224 -----------CTLYTRFA---IPEAKLGST------------GQLVMLGYLKNEEATKE 257
                      C    R A   I +   G +            G  +M GYL N  AT E
Sbjct: 393 AKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAE 452
Query: 258 TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           T+D +GWLHTGD+   D+D   +IVDR KELIK KG QVAP
Sbjct: 453 TIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAP 493

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score =  152 bits (383), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 144/290 (49%), Gaps = 50/290 (17%)
Query: 48  PPDFQLPKIS------PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIP 101
           PP FQ              +A++  SSG+TG+PKGV+L+H N          P   N + 
Sbjct: 175 PPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQV- 233
Query: 102 TSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFV 161
              +    VL+V+PF H +G    L   ++ G  ++ + KF  ET+++ +  YK T + +
Sbjct: 234 ---SPGTAVLTVVPFHHGFGMFTTLGY-LICGFRVVMLTKFDEETFLKTLQDYKCTSVIL 289
Query: 162 VPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET 221
           VP+L   L     +    L+++ E+  G AP +K + +   ++       +RQGYG+TET
Sbjct: 290 VPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG--VRQGYGLTET 347
Query: 222 SPCTLYTRFAIPEA--KLGSTGQLV-------------------------------MLGY 248
           +   + T    PE   K G++G++V                               M GY
Sbjct: 348 TSAIIIT----PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGY 403
Query: 249 LKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           + N EATKE +D EGWLHTGD+ YYDE+ +F+IVDR K LIK KG QV P
Sbjct: 404 VNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPP 453

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  152 bits (383), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 144/290 (49%), Gaps = 50/290 (17%)
Query: 48  PPDFQLPKIS------PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIP 101
           PP FQ              +A++  SSG+TG+PKGV+L+H N          P   N + 
Sbjct: 175 PPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQV- 233
Query: 102 TSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFV 161
              +    VL+V+PF H +G    L   ++ G  ++ + KF  ET+++ +  YK T + +
Sbjct: 234 ---SPGTAVLTVVPFHHGFGMFTTLGY-LICGFRVVMLTKFDEETFLKTLQDYKCTSVIL 289
Query: 162 VPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET 221
           VP+L   L     +    L+++ E+  G AP +K + +   ++       +RQGYG+TET
Sbjct: 290 VPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG--VRQGYGLTET 347
Query: 222 SPCTLYTRFAIPEA--KLGSTGQLV-------------------------------MLGY 248
           +   + T    PE   K G++G++V                               M GY
Sbjct: 348 TSAIIIT----PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGY 403
Query: 249 LKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           + N EATKE +D EGWLHTGD+ YYDE+ +F+IVDR K LIK KG QV P
Sbjct: 404 VNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPP 453

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score =  150 bits (379), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 151/306 (49%), Gaps = 46/306 (15%)
Query: 32  DKSKNIFGFKQL---VTSQ-PPDFQLPKISPND------LAMLPYSSGTTGVPKGVKLSH 81
           D   +  GF+ +   VTS  PP F      P        +A++  SSG+TG+PKGV L H
Sbjct: 153 DSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 212
Query: 82  NNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK 141
               V       P   N I   DT+   +LSV+PF H +G    L   ++ G  ++ + +
Sbjct: 213 RTACVRFSHARDPIFGNQI-IPDTA---ILSVVPFHHGFGMFTTLGY-LICGFRVVLMYR 267
Query: 142 FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKF 201
           F  E ++  +  YK     +VP+L  F A    +    L+++ E+  G AP +K + +  
Sbjct: 268 FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAV 327
Query: 202 KQKVQREDITIRQGYGMTETSPCTLYT----------RFAIP--EAKL-----GST---- 240
            ++       IRQGYG+TET+   L T             +P  EAK+     G T    
Sbjct: 328 AKRFHLPG--IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVN 385
Query: 241 --------GQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
                   G ++M GY+ N EAT   +D +GWLH+GD+AY+DED +F+IVDR K LIK K
Sbjct: 386 QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYK 445
Query: 293 GNQVAP 298
           G QVAP
Sbjct: 446 GYQVAP 451

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score =  150 bits (379), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 151/306 (49%), Gaps = 46/306 (15%)
Query: 32  DKSKNIFGFKQL---VTSQ-PPDFQLPKISPND------LAMLPYSSGTTGVPKGVKLSH 81
           D   +  GF+ +   VTS  PP F      P        +A++  SSG+TG+PKGV L H
Sbjct: 153 DSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 212
Query: 82  NNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK 141
               V       P   N I   DT+   +LSV+PF H +G    L   ++ G  ++ + +
Sbjct: 213 RTACVRFSHARDPIFGNQI-IPDTA---ILSVVPFHHGFGMFTTLGY-LICGFRVVLMYR 267
Query: 142 FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKF 201
           F  E ++  +  YK     +VP+L  F A    +    L+++ E+  G AP +K + +  
Sbjct: 268 FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAV 327
Query: 202 KQKVQREDITIRQGYGMTETSPCTLYT----------RFAIP--EAKL-----GST---- 240
            ++       IRQGYG+TET+   L T             +P  EAK+     G T    
Sbjct: 328 AKRFHLPG--IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVN 385
Query: 241 --------GQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
                   G ++M GY+ N EAT   +D +GWLH+GD+AY+DED +F+IVDR K LIK K
Sbjct: 386 QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYK 445
Query: 293 GNQVAP 298
           G QVAP
Sbjct: 446 GYQVAP 451

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 144/290 (49%), Gaps = 50/290 (17%)
Query: 48  PPDFQLPKIS------PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIP 101
           PP +Q              +A++  SSG+TG+PKGV+L+H N          P   N + 
Sbjct: 175 PPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQV- 233
Query: 102 TSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFV 161
              +    VL+V+PF H +G    L   ++ G  ++ + KF  ET+++ +  YK T + +
Sbjct: 234 ---SPGTAVLTVVPFHHGFGMFTTLGY-LICGFRVVMLTKFDEETFLKTLQDYKCTNVIL 289
Query: 162 VPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET 221
           VP+L   L     +    L+++ E+  G AP +K + +   ++       +RQGYG+TET
Sbjct: 290 VPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFNLPG--VRQGYGLTET 347
Query: 222 SPCTLYTRFAIPEA--KLGSTGQLV-------------------------------MLGY 248
           +   + T    PE   K G++G++V                               M GY
Sbjct: 348 TSAIIIT----PEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGY 403
Query: 249 LKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           + N EATKE +D EGWLHTGD+ YYDE+ +F+IVDR K LIK KG QV P
Sbjct: 404 VNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPP 453

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/306 (33%), Positives = 151/306 (49%), Gaps = 46/306 (15%)
Query: 32  DKSKNIFGFKQL---VTSQ-PPDFQLPKISPND------LAMLPYSSGTTGVPKGVKLSH 81
           D   +  GF+ +   VTS  PP F      P        +A++  SSG+TG+PKGV L H
Sbjct: 158 DSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPH 217
Query: 82  NNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK 141
               V       P   N I   DT+   +LSV+PF H +G    L   ++ G  ++ + +
Sbjct: 218 RTACVRFSHARDPIFGNQI-IPDTA---ILSVVPFHHGFGMFTTLGY-LICGFRVVLMYR 272
Query: 142 FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKF 201
           F  E ++  +  YK     +VP+L  F A    +    L+++ E+  G AP +K + +  
Sbjct: 273 FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAV 332
Query: 202 KQKVQREDITIRQGYGMTETSPCTLYT----------RFAIP--EAKL-----GST---- 240
            ++       IRQGYG+TET+   L T             +P  EAK+     G T    
Sbjct: 333 AKRFHLPG--IRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVN 390
Query: 241 --------GQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
                   G ++M GY+ N EAT   +D +GWLH+GD+AY+DED +F+IVDR K LIK K
Sbjct: 391 QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYK 450
Query: 293 GNQVAP 298
           G QVAP
Sbjct: 451 GYQVAP 456

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 127/275 (46%), Gaps = 50/275 (18%)
Query: 64  LPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN 123
           + Y++GTTG+PKGV  SH    ++    +   +V+   T+ + ++ VL V+P FH+  + 
Sbjct: 181 MAYTTGTTGLPKGVVYSHRALVLH---SLAASLVDG--TALSEKDVVLPVVPMFHVNAWC 235
Query: 124 GILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASI 183
                 ++    ++  P+  P + +E       T    VP++ L LA +   T   L ++
Sbjct: 236 LPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTL 295
Query: 184 REVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYT--------------- 228
           R +  G + A +SLI +F    +R  + +RQGYG+TETSP  +                 
Sbjct: 296 RRLVVGGSAAPRSLIARF----ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKL 351
Query: 229 ---------------RFAIPEAK--------LGST---GQLVMLGYLKNEEATKETVDSE 262
                          R A  E +        LG     G  +  GY  NEEAT+  +  +
Sbjct: 352 TLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPD 411
Query: 263 GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
           G+  TGD+A +DE+GY  I DR K+LIK  G  ++
Sbjct: 412 GFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWIS 446

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 141/317 (44%), Gaps = 55/317 (17%)
Query: 25  IVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPN-DLAMLPYSSGTTGVPKGVKLSHNN 83
            VVGGE      +    ++  S   DF+  K++P  D+A++PY+ GTTG PKGV L+H N
Sbjct: 151 FVVGGE------VNSLSEVXDSGSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFN 204
Query: 84  CAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFT 143
            A N  Q         + T  +  +T++   P FH   F G++N+ +  G   +    F 
Sbjct: 205 LAANALQLA-------VATGLSHXDTIVGCXPXFHSAEF-GLVNLXVTVGNEYVVXGXFN 256
Query: 144 PETYIECVVKYKPTILFVVPSLLLFLAS--HPAVTPEHLASIREVTCGAAPATKSLIDKF 201
            E   E + KYK T  + VP  L  L +    +      + ++    GA P   +L++K 
Sbjct: 257 QEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKL 316
Query: 202 ----KQKVQREDITIRQGYGMTETSPCTL---------YTRFAIP--------------- 233
                +K     +   Q +G TE  P             T   +P               
Sbjct: 317 LKLAAEKCNNPRLRHNQIWGXTEACPXVTTNPPLRLDKSTTQGVPXSDIELKVISLEDGR 376
Query: 234 EAKLGSTGQLVML------GYLKNEEATKET--VDSEG--WLHTGDVAYYDEDGYFYIVD 283
           E  +G +G++V+       GY K E+  +E    D +G  +  TGDV + DE+G+ +  D
Sbjct: 377 ELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQD 436
Query: 284 RTKELIKVKGNQVAPYK 300
           R KE+IK KG  +AP++
Sbjct: 437 RVKEVIKYKGYTIAPFE 453

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 118/270 (43%), Gaps = 44/270 (16%)
Query: 59  NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTS-QETVLSVLPFF 117
           +D   + Y+SGTTG PKGV  +H        + VH    +   T D   ++ +L  LP F
Sbjct: 170 DDNLFIMYTSGTTGHPKGVVHTH--------ESVHSAASSWASTIDVRYRDRLLLPLPMF 221
Query: 118 HIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTP 177
           H+     ++    M G+ +I++P+F        +V+ +  I   VP++L F+   P    
Sbjct: 222 HVAALTTVI-FSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAE 280
Query: 178 EHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET---------------- 221
                 R    G AP  ++LI  +  K    +I + QGY +TE+                
Sbjct: 281 LDAPDFRYFITGGAPMPEALIKIYAAK----NIEVVQGYALTESCGGGTLLLSEDALRKA 336
Query: 222 ---SPCTLYTRFAIP----------EAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTG 268
                 T++T  A+           E ++     +++  Y    EAT++  D+ GW  TG
Sbjct: 337 GSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFDN-GWFRTG 395
Query: 269 DVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           D+   D++GY YI DR K++I   G  V P
Sbjct: 396 DIGEIDDEGYLYIKDRLKDMIISGGENVYP 425

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 112/269 (41%), Gaps = 41/269 (15%)
Query: 59  NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
           +DLA + Y+SGTTG  KG  LSH+N A N    V  D     P      + ++  LP +H
Sbjct: 155 DDLAAILYTSGTTGRSKGAXLSHDNLASNSLTLV--DYWRFTP-----DDVLIHALPIYH 207
Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
            +G     NV +      I +PKF P+  ++     + T+L  VP+    L   P +T E
Sbjct: 208 THGLFVASNVTLFARGSXIFLPKFDPDKILDLXA--RATVLXGVPTFYTRLLQSPRLTKE 265
Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT------------- 225
                R    G+AP    L D  ++   +    + + YG TET+  T             
Sbjct: 266 TTGHXRLFISGSAPL---LADTHREWSAKTGHAVLERYGXTETNXNTSNPYDGDRVPGAV 322
Query: 226 ------LYTRFAIPEAK----LGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGD 269
                 +  R   PE       G  G +      V  GY +  E TK     +G+  TGD
Sbjct: 323 GPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGD 382
Query: 270 VAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           +   DE GY +I+ R K+L+   G  V P
Sbjct: 383 LGKIDERGYVHILGRGKDLVITGGFNVYP 411

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 112/271 (41%), Gaps = 41/271 (15%)
Query: 59  NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
           +DLA + Y+SGTTG   G  LSH+N A N    V  D     P      + ++  LP +H
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLV--DYWRFTP-----DDVLIHALPIYH 207
Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
            +G     NV +     MI +P F P+  ++ +   + T+L  VP+    L   P +T E
Sbjct: 208 THGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRLLQSPRLTXE 265
Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT------------- 225
               +R    G+AP    L D  ++        + + YGMTET+  T             
Sbjct: 266 TTGHMRLFISGSAPL---LADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAV 322
Query: 226 ------LYTRFAIPEAKL----GSTGQL------VMLGYLKNEEATKETVDSEGWLHTGD 269
                 +  R   PE       G  G +      V  GY +  E T      +G+  TGD
Sbjct: 323 GPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGD 382
Query: 270 VAYYDEDGYFYIVDRTKELIKVKGNQVAPYK 300
           +   DE GY +I+ R  +L+   G  V P +
Sbjct: 383 LGXIDERGYVHILGRGXDLVITGGFNVYPXE 413

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 112/271 (41%), Gaps = 41/271 (15%)
Query: 59  NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
           +DLA + Y+SGTTG   G  LSH+N A N    V  D     P      + ++  LP +H
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLV--DYWRFTP-----DDVLIHALPIYH 207
Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
            +G     NV +     MI +P F P+  ++ +   + T+L  VP+    L   P +T E
Sbjct: 208 THGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRLLQSPRLTXE 265
Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT------------- 225
               +R    G+AP    L D  ++        + + YGMTET+  T             
Sbjct: 266 TTGHMRLFISGSAPL---LADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAV 322
Query: 226 ------LYTRFAIPEAKL----GSTGQL------VMLGYLKNEEATKETVDSEGWLHTGD 269
                 +  R   PE       G  G +      V  GY +  E T      +G+  TGD
Sbjct: 323 GPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGD 382
Query: 270 VAYYDEDGYFYIVDRTKELIKVKGNQVAPYK 300
           +   DE GY +I+ R  +L+   G  V P +
Sbjct: 383 LGXIDERGYVHILGRGXDLVITGGFNVYPXE 413

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 112/271 (41%), Gaps = 41/271 (15%)
Query: 59  NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
           +DLA + Y+SGTTG   G  LSH+N A N    V  D     P      + ++  LP +H
Sbjct: 155 DDLAAILYTSGTTGRSXGAMLSHDNLASNSLTLV--DYWRFTP-----DDVLIHALPIYH 207
Query: 119 IYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE 178
            +G     NV +     MI +P F P+  ++ +   + T+L  VP+    L   P +T E
Sbjct: 208 THGLFVASNVTLFARGSMIFLPXFDPDXILDLMA--RATVLMGVPTFYTRLLQSPRLTXE 265
Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT------------- 225
               +R    G+AP    L D  ++        + + YGMTET+  T             
Sbjct: 266 TTGHMRLFISGSAPL---LADTHREWSAXTGHAVLERYGMTETNMNTSNPYDGDRVPGAV 322
Query: 226 ------LYTRFAIPEAKL----GSTGQL------VMLGYLKNEEATKETVDSEGWLHTGD 269
                 +  R   PE       G  G +      V  GY +  E T      +G+  TGD
Sbjct: 323 GPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGD 382
Query: 270 VAYYDEDGYFYIVDRTKELIKVKGNQVAPYK 300
           +   DE GY +I+ R  +L+   G  V P +
Sbjct: 383 LGXIDERGYVHILGRGXDLVITGGFNVYPXE 413

>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From Mycobacterium Tuberculosis Length = 396

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 44/255 (17%)
Query: 59  NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTS-QETVLSVLPFF 117
           +D   + Y+SGTTG PKGV  +H        + VH    +   T D   ++ +L  LP F
Sbjct: 156 DDNLFIMYTSGTTGHPKGVVHTH--------ESVHSAASSWASTIDVRYRDRLLLPLPMF 207
Query: 118 HIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTP 177
           H+     ++    M G+ +I++P+F        +V+ +  I   VP++L F+   P    
Sbjct: 208 HVAALTTVI-FSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAE 266
Query: 178 EHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET---------------- 221
                 R    G AP  ++LI  +  K    +I + QGY +TE+                
Sbjct: 267 LDAPDFRYFITGGAPMPEALIKIYAAK----NIEVVQGYALTESCGGGTLLLSEDALRKA 322
Query: 222 ---SPCTLYTRFAIP----------EAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTG 268
                 T++T  A+           E ++     +++  Y    EAT++  D+ GW  TG
Sbjct: 323 GSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFDN-GWFRTG 381
Query: 269 DVAYYDEDGYFYIVD 283
           D+   D++GY YI D
Sbjct: 382 DIGEIDDEGYLYIKD 396

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 130/327 (39%), Gaps = 51/327 (15%)
Query: 5   PQLLEVGTK----IGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPND 60
           P ++  GT     +   LP+  G        D S     FK L +  P  F  P+    D
Sbjct: 104 PSVVVAGTDYRDIVAGVLPSLGGVKKAYAIGDGSGPFAPFKDLASDTP--FSAPEFGAAD 161
Query: 61  LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIY 120
             ++ +++   G P+G  +S  N  +     V    +       T  +  L +LP FH+ 
Sbjct: 162 GFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRL-------TEADVNLGMLPLFHVT 214
Query: 121 GFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHL 180
           G  G++  +   G   +   KF P      +  +K T++     +L  +    A  P  L
Sbjct: 215 GL-GLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--PAQL 271
Query: 181 ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF---------- 230
           AS+R VT    P T   I++F+      + T    +G +ETS  + +  +          
Sbjct: 272 ASLRAVTGLDTPET---IERFEATC--PNATFWATFGQSETSGLSTFAPYRDRPKSAGRP 326
Query: 231 ------AIPEAKL-----GSTGQLVMLG------YLKNEEATKETVDSEGWLHTGDVAYY 273
                 A+ +A+      G  G++V+ G      Y  N  AT+      GW HTGD+  +
Sbjct: 327 LFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRF 385
Query: 274 DEDGYFYIVDRT--KELIKVKGNQVAP 298
           D DGY +   R   KELIK  G  V P
Sbjct: 386 DADGYLFYAGRAPEKELIKTGGENVYP 412

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 136/327 (41%), Gaps = 64/327 (19%)
Query: 10  VGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSG 69
           +  ++ + LP  +  IV G    +++     + L T +P   +LP++  +D+A L  S G
Sbjct: 140 LARQVQSKLPTLKNIIVAG----EAEEFLPLEDLHT-EP--VKLPEVKSSDVAFLQLSGG 192
Query: 70  TTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN--GILN 127
           +TG+ K +  +H++   +L++ V    ++H           L+ LP  H Y  +  G+L 
Sbjct: 193 STGLSKLIPRTHDDYIYSLKRSVEVCWLDH-------STVYLAALPMAHNYPLSSPGVLG 245
Query: 128 VVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVT 187
           V +  G  ++  P  +P+     + + K TI  +VP L +      +   + L+S++ + 
Sbjct: 246 V-LYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQ 304
Query: 188 CGAAPATKSLIDKFKQKVQRE-----DITIRQGYGMTETSPCTLYTRFAIPE-------- 234
            G A        KF  +  R        T++Q +GM E      YTR   PE        
Sbjct: 305 VGGA--------KFSAEAARRVKAVFGCTLQQVFGMAEG--LVNYTRLDDPEEIIVNTQG 354
Query: 235 ------------------AKLGSTGQLV------MLGYLKNEEATKETVDSEGWLHTGDV 270
                              K G TG L+      + GY K EE    +   +G+  TGD+
Sbjct: 355 KPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDI 414
Query: 271 AYYDEDGYFYIVDRTKELIKVKGNQVA 297
                DGY  +  R K+ I   G +VA
Sbjct: 415 VRLTRDGYIVVEGRAKDQINRGGEKVA 441

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 134/327 (40%), Gaps = 64/327 (19%)
Query: 10  VGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSG 69
           +  ++ + LP  +  IV G    +++     + L T +P   +LP++  +D+A L  S G
Sbjct: 140 LARQVQSKLPTLKNIIVAG----EAEEFLPLEDLHT-EP--VKLPEVKSSDVAFLQLSGG 192
Query: 70  TTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN--GILN 127
           +TG+ K +  +H++   +L++ V    ++H           L+ LP  H Y  +  G+L 
Sbjct: 193 STGLSKLIPRTHDDYIYSLKRSVEVCWLDH-------STVYLAALPXAHNYPLSSPGVLG 245
Query: 128 VVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVT 187
           V +  G  ++  P  +P+     + + K TI  +VP L        +   + L+S++ + 
Sbjct: 246 V-LYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAXVWXDAASSRRDDLSSLQVLQ 304
Query: 188 CGAAPATKSLIDKFKQKVQRE-----DITIRQGYGMTETSPCTLYTRFAIPE-------- 234
            G A        KF  +  R        T++Q +G  E      YTR   PE        
Sbjct: 305 VGGA--------KFSAEAARRVKAVFGCTLQQVFGXAEG--LVNYTRLDDPEEIIVNTQG 354
Query: 235 ------------------AKLGSTGQLV------MLGYLKNEEATKETVDSEGWLHTGDV 270
                              K G TG L+      + GY K EE    +   +G+  TGD+
Sbjct: 355 KPXSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDI 414
Query: 271 AYYDEDGYFYIVDRTKELIKVKGNQVA 297
                DGY  +  R K+ I   G +VA
Sbjct: 415 VRLTRDGYIVVEGRAKDQINRGGEKVA 441

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 121/270 (44%), Gaps = 48/270 (17%)
Query: 59  NDLAMLPYSSGTTGVPKGVKLSHNN---CAVNLEQCVHPDIVNHIPTSDTSQETVLSVLP 115
           +D+A + ++SGTTG  K V  +  N    A+  ++ +  D        DT+    LSVLP
Sbjct: 163 DDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFD-------RDTNW---LSVLP 212
Query: 116 FFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV 175
            +HI G + +L  V+  G  +  + KF  E  +  +   + T + +VP  L +L      
Sbjct: 213 IYHISGLSVLLRAVIE-GFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH 271
Query: 176 TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET-------SPCTLYT 228
            P +L   +++  G A  + ++I+   Q     ++ I   +GMTET       +P  L+ 
Sbjct: 272 EPYNL---QKILLGGAKLSATMIETALQY----NLPIYNSFGMTETCSQFLTATPEMLHA 324
Query: 229 R---FAIPEA---------------KLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDV 270
           R     +P A               +L   G  VM GYL   + T       G+ +TGD+
Sbjct: 325 RPDTVGMPSANVDVKIKNPNKEGHGELMIKGANVMNGYLYPTDLTGTF--ENGYFNTGDI 382
Query: 271 AYYDEDGYFYIVDRTKELIKVKGNQVAPYK 300
           A  D +GY  I DR K+LI   G  + PY+
Sbjct: 383 AEIDHEGYVMIYDRRKDLIISGGENIYPYQ 412

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 119/285 (41%), Gaps = 48/285 (16%)
Query: 49  PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV---NHIPTSDT 105
           P  + P+  P   A + Y+SGTTG+PK         A+  ++     ++     +     
Sbjct: 143 PPIEDPQREPAQPAFIFYTSGTTGLPK--------AAIIPQRAAESRVLFMSTQVGLRHG 194
Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
               VL ++P +H+ GF  +L   +      + I +F P   ++ V + + T LF  P+ 
Sbjct: 195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTH 254
Query: 166 LLFLASHPAVTPEHLA--SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP 223
           L  LA+  A     L   S+R VT   A    ++++   Q +  E + I   YG TE + 
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI---YGTTE-AM 310
Query: 224 CTLYTRFA----------IPEAKL-------------GSTGQLVM-------LGYLKNEE 253
            +LY R              E ++             G  G+L++       +GYL   E
Sbjct: 311 NSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPE 370
Query: 254 ATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           AT E +  +GW  T DVA +  +G   I+ R  ++I   G  + P
Sbjct: 371 ATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHP 414

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 119/285 (41%), Gaps = 48/285 (16%)
Query: 49  PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV---NHIPTSDT 105
           P  + P+  P   A + Y+SGTTG+PK         A+  ++     ++     +     
Sbjct: 143 PPIEDPQREPAQPAFIFYTSGTTGLPK--------AAIIPQRAAESRVLFMSTQVGLRHG 194
Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
               VL ++P +H+ GF  +L   +      + + +F P   ++ V + + T LF  P+ 
Sbjct: 195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTH 254
Query: 166 LLFLASHPAVTPEHLA--SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP 223
           L  LA+  A     L   S+R VT   A    ++++   Q +  E +    GYG TE + 
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVN---GYGTTE-AM 310
Query: 224 CTLYTRFA----------IPEAKL-------------GSTGQLVM-------LGYLKNEE 253
            +LY R              E ++             G  G+L++       +GYL   +
Sbjct: 311 NSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQ 370
Query: 254 ATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           AT E +  +GW  T DVA +  +G   I+ R  ++I   G  + P
Sbjct: 371 ATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHP 414

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 119/285 (41%), Gaps = 48/285 (16%)
Query: 49  PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV---NHIPTSDT 105
           P  + P+  P   A + Y+SGTTG+PK         A+  ++     ++     +     
Sbjct: 143 PPIEDPQREPAQPAFIFYTSGTTGLPK--------AAIIPQRAAESRVLFMSTQVGLRHG 194
Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
               VL ++P +H+ GF  +L   +      + + +F P   ++ V + + T LF  P+ 
Sbjct: 195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTH 254
Query: 166 LLFLASHPAVTPEHLA--SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP 223
           L  LA+  A     L   S+R VT   A    ++++   Q +  E + I   YG TE + 
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI---YGTTE-AM 310
Query: 224 CTLYTRFA----------IPEAKL-------------GSTGQLVM-------LGYLKNEE 253
            +LY R              E ++             G  G+L++       +GYL   +
Sbjct: 311 NSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQ 370
Query: 254 ATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           AT E +  +GW  T DVA +  +G   I+ R  ++I   G  + P
Sbjct: 371 ATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHP 414

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 118/285 (41%), Gaps = 48/285 (16%)
Query: 49  PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV---NHIPTSDT 105
           P  + P+  P   A + Y+SGTTG+PK         A+  ++     ++     +     
Sbjct: 143 PPIEDPQREPAQPAFIFYTSGTTGLPK--------AAIIPQRAAESRVLFMSTQVGLRHG 194
Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
               VL ++P +H+ GF  +L   +      + + +F P   ++ V + + T LF  P+ 
Sbjct: 195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTH 254
Query: 166 LLFLASHPAVTPEHLA--SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP 223
           L  LA+  A     L   S+R VT   A    ++++   Q +  E + I   YG TE   
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNI---YGTTEAM- 310
Query: 224 CTLYTRFA----------IPEAKL-------------GSTGQLVM-------LGYLKNEE 253
            +LY R              E ++             G  G+L++       +GYL   +
Sbjct: 311 NSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQ 370
Query: 254 ATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           AT E +  +GW  T DVA +  +G   I+ R  ++I   G  + P
Sbjct: 371 ATAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHP 414

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 119/314 (37%), Gaps = 72/314 (22%)
Query: 50  DFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQET 109
           D  L +  PND+A L Y+SG+T  P+GV ++H     NL    H D +   P      + 
Sbjct: 166 DVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVXANLRAISH-DGIKLRPG-----DR 219
Query: 110 VLSVLPFFHIYGFNGIL--NVVMMYGMHMITIPKFT--PETYIECVVKYKPTILFVVP-- 163
            +S LPF+H  G  G L   V     +  +    F   P  +++ + K + T+    P  
Sbjct: 220 CVSWLPFYHDXGLVGFLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGTVSVAPPFG 279
Query: 164 -SLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQ---KVQREDITIRQGYGMT 219
             L     +   +    L+  R    GA P +   + +F +   +V  ++ T    YG+ 
Sbjct: 280 YELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFXPCYGLA 339
Query: 220 ETSPCTLYTRFA--------------------IPEAKLGSTGQLVMLG--------YLKN 251
           E +    ++  A                     P A+  +    V  G         ++N
Sbjct: 340 ENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN 399
Query: 252 E---------------------------EATKETVDSEGWLHTGDVAYYDEDGYFYIVDR 284
           E                           + +++ + + GWL TGD+ Y   DGY Y+  R
Sbjct: 400 EAGXPVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGR 458
Query: 285 TKELIKVKGNQVAP 298
            K+LI ++G  + P
Sbjct: 459 IKDLIIIRGRNIWP 472

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 118/285 (41%), Gaps = 48/285 (16%)
Query: 49  PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV---NHIPTSDT 105
           P  + P+  P   A + Y+SGTTG+PK         A+  ++     ++     +     
Sbjct: 143 PPIEDPQREPAQPAFIFYTSGTTGLPK--------AAIIPQRAAESRVLFMSTQVGLRHG 194
Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
               VL ++P +H+ GF  +L   +      + + +F P   ++ V + + T LF  P+ 
Sbjct: 195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTH 254
Query: 166 LLFLASHPAVTPEHLA--SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP 223
           L  LA+  A     L   S+R VT   A    ++++   Q +  E +     YG TE + 
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVN---AYGTTE-AM 310
Query: 224 CTLYTRFA----------IPEAKL-------------GSTGQLVM-------LGYLKNEE 253
            +LY R              E ++             G  G+L++       +GYL   +
Sbjct: 311 NSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQ 370
Query: 254 ATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           AT E +  +GW  T DVA +  +G   I+ R  ++I   G  + P
Sbjct: 371 ATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHP 414

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 117/285 (41%), Gaps = 48/285 (16%)
Query: 49  PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV---NHIPTSDT 105
           P  + P+  P   A + Y+SGTTG+PK         A+  ++     ++     +     
Sbjct: 143 PPIEDPQREPAQPAFIFYTSGTTGLPK--------AAIIPQRAAESRVLFXSTQVGLRHG 194
Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
               VL + P +H+ GF  +L   +      + + +F P   ++ V + + T LF  P+ 
Sbjct: 195 RHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTH 254
Query: 166 LLFLASHPAVTPEHLA--SIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP 223
           L  LA+  A     L   S+R VT   A    ++++   Q +  E + I   YG TE + 
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATXPDAVLETVHQHLPGEKVNI---YGTTE-AX 310
Query: 224 CTLYTRFA----------IPEAKL-------------GSTGQLVM-------LGYLKNEE 253
            +LY R              E ++             G  G+L++       +GYL   +
Sbjct: 311 NSLYXRQPKTGTEXAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQ 370
Query: 254 ATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           AT E +  +GW  T DVA +  +G   I+ R  + I   G  + P
Sbjct: 371 ATAEKL-QDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHP 414

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 115/306 (37%), Gaps = 60/306 (19%)
Query: 42  QLVTSQPPDFQLPKISP--------------------NDLAMLPYSSGTTGVPKGVKLSH 81
           QL+ SQP + + P+++P                    +D+A   YSSG+TG PKG   +H
Sbjct: 147 QLIVSQPRESE-PRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTH 205
Query: 82  NNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK 141
            N     E    P +           + V S    F  YG    L   +  G   I + +
Sbjct: 206 ANLYWTAELYAKPIL------GIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAE 259
Query: 142 F-TPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDK 200
             T +     +V+++PT+ + VP+L   +   P +      +IR  T       + + ++
Sbjct: 260 RPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGER 319
Query: 201 FKQKVQREDITIRQGYGMTETSPCTLYTR-------------------------FAIPEA 235
           F      E   I  G G TE     L  R                          A+P+ 
Sbjct: 320 FTAHFGCE---ILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDG 376
Query: 236 KLGS---TGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
           ++G     G    + Y  N E ++ T   E W+ +GD      +G +    R+ +++KV 
Sbjct: 377 EVGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPNGCYVYAGRSDDMLKVS 435
Query: 293 GNQVAP 298
           G  V+P
Sbjct: 436 GQYVSP 441

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 128/318 (40%), Gaps = 63/318 (19%)
Query: 27  VGGEHDKSKNIFGFKQLVTSQPPDFQLP----KISPNDLAMLPYSSGTTGVPKGVKLSHN 82
           VGG  D  +    F++ +    P F+ P         D+ ++ +SSGT G PK V+  H+
Sbjct: 191 VGG--DVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVE--HD 246
Query: 83  NC-------AVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMH 135
           N             Q V  D +++        + V   L     YG       V +Y   
Sbjct: 247 NTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKL-----YGQWIAGCAVFVYDYD 301
Query: 136 MITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATK 195
                +F  +  +E   KY  T     P++  FL     ++  + ++++       P   
Sbjct: 302 -----RFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVAGEPLNP 355
Query: 196 SLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPE--------------------- 234
            + ++F   ++   I + +G+G TET        +  P+                     
Sbjct: 356 EVFNRF---LEFTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGR 412
Query: 235 -AKLGSTGQLVM-----------LGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIV 282
             ++G  G++V+           + Y K+ E T+ET   +G+ HTGD+A+ DEDGY + V
Sbjct: 413 LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFV 471
Query: 283 DRTKELIKVKGNQVAPYK 300
            R  ++IK  G +V P++
Sbjct: 472 GRADDIIKTSGYKVGPFE 489

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/275 (26%), Positives = 111/275 (40%), Gaps = 50/275 (18%)
Query: 59  NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
            D A++ Y+SGTTG PKG  +     A  L+               T ++ ++  LP FH
Sbjct: 155 GDPALVVYTSGTTGPPKGAVIPRRALATTLDALAD-------AWQWTGEDVLVQGLPLFH 207
Query: 119 IYGFNGILNVV--MMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVT 176
           ++G   +L ++  +  G  +  + +F+ E      +    T+LF VP++   +A      
Sbjct: 208 VHGL--VLGILGPLRRGGSVRHLGRFSTEGAARE-LNDGATMLFGVPTMYHRIAETLPAD 264
Query: 177 PE---HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT-------- 225
           PE    LA  R +  G+A       ++      R  I   + YGMTET   T        
Sbjct: 265 PELAKALAGARLLVSGSAALPVHDHERIAAATGRRVI---ERYGMTETLMNTSVRADGEP 321
Query: 226 ---------------LYTRFAIPEAKLG--STGQLVMLG------YLKNEEATKETVDSE 262
                          L      P A L   S G++ + G      YL   +AT      +
Sbjct: 322 RAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTED 381
Query: 263 GWLHTGDVAYYDEDGYFYIVDR-TKELIKVKGNQV 296
           G+  TGD+A  D DGY  IV R   +LIK  G ++
Sbjct: 382 GFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKI 416

>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1 In A Complex With Amp And Phenylalanine Length = 563

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 114/280 (40%), Gaps = 65/280 (23%)
Query: 60  DLAMLPYSSGTTGVPKGVKLSH---NNCAVNLEQCVHPDIVNHIP--TSDTSQETVLSVL 114
           DLA + Y+SGTTG PKG  L H   +N  V  E  ++    + I    S +   +V  + 
Sbjct: 183 DLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM- 241
Query: 115 PFFHIYGFNGILNVVMMYGMHMITIPKFTP-ETYIECVVKYKPTILFVVPSLLLFLASHP 173
                  F  +L    +Y +   TI  F   E YI    + + T++ + P+ ++ L    
Sbjct: 242 -------FMALLTGASLYIILKDTINDFVKFEQYIN---QKEITVITLPPTYVVHL---- 287
Query: 174 AVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLY------ 227
              PE + SI+ +    +  + SL++K+K+KV     T    YG TET+ C         
Sbjct: 288 --DPERILSIQTLITAGSATSPSLVNKWKEKV-----TYINAYGPTETTICATTWVATKE 340
Query: 228 --------------TRFAIPEAKL-----GSTGQLVM------LGYLKNEEATKET---- 258
                         T+  I +  L     G  G+L +       GY K  E T +     
Sbjct: 341 TIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDN 400
Query: 259 --VDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
             V  E    TGD A +  DG    + R    +K++G++V
Sbjct: 401 PFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRV 440

>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1 With Atp From Streptomyces Length = 544

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 111/289 (38%), Gaps = 56/289 (19%)
Query: 54  PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSV 113
           P     D+A + Y+SGTTG PKGV + H N    L     P + +    S   +  +   
Sbjct: 170 PGPGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGA--PSVFDF---SGDDRWLLFHS 224
Query: 114 LPF-FHIYGFNGILNVVMMYGMHMITIPKF---TPETYIECVVKYKPTILFVVPSLLLFL 169
           L F F ++   G  +     G  ++ +P +   TPE Y+  ++    T++   P+  L L
Sbjct: 225 LSFDFSVWEIWGAFST----GAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLAL 280
Query: 170 ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGM----------- 218
                     ++ +R V  G    T  ++  + +    +   +  GYG+           
Sbjct: 281 TEAAVRGGRDVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITETTVFTTFEE 340
Query: 219 -TET---SPCTLYTRFAIP------------EAKLGSTGQLVMLG------YLKNEEATK 256
            TE       ++  R A+P            +   G TG+L + G      YL+  E T 
Sbjct: 341 ITEAYLAQDASIIGR-ALPSFGTRVVGDDGRDVAPGETGELWLSGAQLAEGYLRRPELTA 399
Query: 257 E---------TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
           E         T +S  +  TGD+     DG F    R    IK++G ++
Sbjct: 400 EKFPEVTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRI 448

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 51  FQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTS-DTSQET 109
           +Q   I  ND+A L Y+SG+T  PKGV +SH+N   NL         N I TS   + ET
Sbjct: 159 WQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNL---------NKIFTSFHXNDET 209
Query: 110 VL-SVLPFFHIYGFNGILNVVMMYGMHMITIPKFT----PETYIECVVKYKPTI 158
           ++ S LP  H  G  G +   +  G+  I    F+    P ++++ + KYK TI
Sbjct: 210 IIFSWLPPHHDXGLIGCILTPIYGGIQAIXXSPFSFLQNPLSWLKHITKYKATI 263

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 108/273 (39%), Gaps = 47/273 (17%)
Query: 59  NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFH 118
           +++A    S G+TG PK +  +HN+   ++        +N       S   +L  LP  H
Sbjct: 191 DEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLN-------SNTRLLCALPAPH 243
Query: 119 IYGFN--GILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVT 176
            +  +  G L V+   G  ++  P   P      + +++  +  +VPS ++      A  
Sbjct: 244 NFMLSSPGALGVLHAGGC-VVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY 302
Query: 177 PEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF------ 230
            + + S++ +  G A   +SL    +Q  +  +  ++Q +GM E      YTR       
Sbjct: 303 KDQIQSLKLLQVGGASFPESLA---RQVPEVLNCKLQQVFGMAEG--LVNYTRLDDSDEQ 357
Query: 231 -----------------------AIPEAKLG---STGQLVMLGYLKNEEATKETVDSEGW 264
                                   +PE ++G   + G     GY ++ E   +  D + +
Sbjct: 358 IFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNY 417
Query: 265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
            ++GD+     DG   +V R K+ I   G ++A
Sbjct: 418 YYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIA 450

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 63/288 (21%), Positives = 112/288 (38%), Gaps = 55/288 (19%)
Query: 56  ISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETV-LSVL 114
           +   D   L Y+SG+TG PKGV+  H+     L       ++    T DT QE V  +  
Sbjct: 259 VDSEDPLFLLYTSGSTGAPKGVQ--HSTAGYLLGA-----LLTMRYTFDTHQEDVFFTAG 311
Query: 115 PFFHIYGFNGILNVVMMYGMHMITI------PKFTPETYIECVVKYKPTILFVVPSLLLF 168
               I G   ++   ++YG   +        P ++   Y + + ++K T  +V P+ L  
Sbjct: 312 DIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYS--RYWDIIDEHKVTQFYVAPTALRL 369
Query: 169 L--ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP--- 223
           L  A    +    L S+R +     P    + + + +K+ + +I I   Y  TE+     
Sbjct: 370 LKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLV 429
Query: 224 -------------CTLYTRFAIPEAKLG-STGQLVMLGYLKNEEATKETVDS-------- 261
                           +  F I    L  +TG+ +   + +   A K    S        
Sbjct: 430 TPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKN 489
Query: 262 ------------EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA 297
                        G+  TGD A  D+DGY +I+ R  +++ V G++++
Sbjct: 490 HDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLS 537

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 114/301 (37%), Gaps = 52/301 (17%)
Query: 40  FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV------H 93
           ++ L+    P+ Q   ++  D   + Y+SG+TG PKGV  +     V            H
Sbjct: 237 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 94  PDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKF-TPETYIECVV 152
           P  + +  T+D    T  S L    +YG        +M+      +P + TP    + V 
Sbjct: 297 PGDI-YWCTADVGWVTGHSYL----LYGPLACGATTLMFE----GVPNWPTPARMCQVVD 347
Query: 153 KYKPTILFVVPSLL--LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210
           K++  IL+  P+ +  L      A+     +S+R +     P      + + +K+ +E  
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKC 407
Query: 211 TIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ---LVMLGYLKNEEATKE------TVDS 261
            +   +  TET    +       E K GS  +    V    + NE   +E       V +
Sbjct: 408 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVIT 467
Query: 262 EGW-------------------------LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
           + W                           +GD A  DEDGY++I  R  +++ V G+++
Sbjct: 468 DSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
Query: 297 A 297
Sbjct: 528 G 528

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 114/301 (37%), Gaps = 52/301 (17%)
Query: 40  FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV------H 93
           ++ L+    P+ Q   ++  D   + Y+SG+TG PKGV  +     V            H
Sbjct: 237 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 94  PDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKF-TPETYIECVV 152
           P  + +  T+D    T  S L    +YG        +M+      +P + TP    + V 
Sbjct: 297 PGDI-YWCTADVGWVTGHSYL----LYGPLACGATTLMFE----GVPNWPTPARMCQVVD 347
Query: 153 KYKPTILFVVPSLL--LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210
           K++  IL+  P+ +  L      A+     +S+R +     P      + + +K+ +E  
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 211 TIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ---LVMLGYLKNEEATKE------TVDS 261
            +   +  TET    +       E K GS  +    V    + NE   +E       V +
Sbjct: 408 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVIT 467
Query: 262 EGW-------------------------LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
           + W                           +GD A  DEDGY++I  R  +++ V G+++
Sbjct: 468 DSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
Query: 297 A 297
Sbjct: 528 G 528

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 114/301 (37%), Gaps = 52/301 (17%)
Query: 40  FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV------H 93
           ++ L+    P+ Q   ++  D   + Y+SG+TG PKGV  +     V            H
Sbjct: 237 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 94  PDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKF-TPETYIECVV 152
           P  + +  T+D    T  S L    +YG        +M+      +P + TP    + V 
Sbjct: 297 PGDI-YWCTADVGWVTGHSYL----LYGPLACGATTLMFE----GVPNWPTPARMCQVVD 347
Query: 153 KYKPTILFVVPSLL--LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210
           K++  IL+  P+ +  L      A+     +S+R +     P      + + +K+ +E  
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 211 TIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ---LVMLGYLKNEEATKE------TVDS 261
            +   +  TET    +       E K GS  +    V    + NE   +E       V +
Sbjct: 408 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVIT 467
Query: 262 EGW-------------------------LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
           + W                           +GD A  DEDGY++I  R  +++ V G+++
Sbjct: 468 DSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
Query: 297 A 297
Sbjct: 528 G 528

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 114/301 (37%), Gaps = 52/301 (17%)
Query: 40  FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV------H 93
           ++ L+    P+ Q   ++  D   + Y+SG+TG PKGV  +     V            H
Sbjct: 237 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 94  PDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKF-TPETYIECVV 152
           P  + +  T+D    T  S L    +YG        +M+      +P + TP    + V 
Sbjct: 297 PGDI-YWCTADVGWVTGHSYL----LYGPLACGATTLMFE----GVPNWPTPARMCQVVD 347
Query: 153 KYKPTILFVVPSLL--LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210
           K++  IL+  P+ +  L      A+     +S+R +     P      + + +K+ +E  
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 211 TIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ---LVMLGYLKNEEATKE------TVDS 261
            +   +  TET    +       E K GS  +    V    + NE   +E       V +
Sbjct: 408 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVIT 467
Query: 262 EGW-------------------------LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
           + W                           +GD A  DEDGY++I  R  +++ V G+++
Sbjct: 468 DSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
Query: 297 A 297
Sbjct: 528 G 528

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 114/301 (37%), Gaps = 52/301 (17%)
Query: 40  FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV------H 93
           ++ L+    P+ Q   ++  D   + Y+SG+TG PKGV  +     V            H
Sbjct: 237 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 94  PDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKF-TPETYIECVV 152
           P  + +  T+D    T  S L    +YG        +M+      +P + TP    + V 
Sbjct: 297 PGDI-YWCTADVGWVTGHSYL----LYGPLACGATTLMFE----GVPNWPTPARMCQVVD 347
Query: 153 KYKPTILFVVPSLL--LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210
           K++  IL+  P+ +  L      A+     +S+R +     P      + + +K+ +E  
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 211 TIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ---LVMLGYLKNEEATKE------TVDS 261
            +   +  TET    +       E K GS  +    V    + NE   +E       V +
Sbjct: 408 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVIT 467
Query: 262 EGW-------------------------LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
           + W                           +GD A  DEDGY++I  R  +++ V G+++
Sbjct: 468 DSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
Query: 297 A 297
Sbjct: 528 G 528

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 114/301 (37%), Gaps = 52/301 (17%)
Query: 40  FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV------H 93
           ++ L+    P+ Q   ++  D   + Y+SG+TG PKGV  +     V            H
Sbjct: 237 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 94  PDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKF-TPETYIECVV 152
           P  + +  T+D    T  S L    +YG        +M+      +P + TP    + V 
Sbjct: 297 PGDI-YWCTADVGWVTGHSYL----LYGPLACGATTLMFE----GVPNWPTPARMCQVVD 347
Query: 153 KYKPTILFVVPSLL--LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210
           K++  IL+  P+ +  L      A+     +S+R +     P      + + +K+ +E  
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 211 TIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ---LVMLGYLKNEEATKE------TVDS 261
            +   +  TET    +       E K GS  +    V    + NE   +E       V +
Sbjct: 408 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVIT 467
Query: 262 EGW-------------------------LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
           + W                           +GD A  DEDGY++I  R  +++ V G+++
Sbjct: 468 DSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
Query: 297 A 297
Sbjct: 528 G 528

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 114/301 (37%), Gaps = 52/301 (17%)
Query: 40  FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV------H 93
           ++ L+    P+ Q   ++  D   + Y+SG+TG PKGV  +     V            H
Sbjct: 237 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 94  PDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKF-TPETYIECVV 152
           P  + +  T+D    T  S L    +YG        +M+      +P + TP    + V 
Sbjct: 297 PGDI-YWCTADVGWVTGHSYL----LYGPLACGATTLMFE----GVPNWPTPARMCQVVD 347
Query: 153 KYKPTILFVVPSLL--LFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI 210
           K++  IL+  P+ +  L      A+     +S+R +     P      + + +K+ +E  
Sbjct: 348 KHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKC 407
Query: 211 TIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ---LVMLGYLKNEEATKE------TVDS 261
            +   +  TET    +       E K GS  +    V    + NE   +E       V +
Sbjct: 408 PVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVIT 467
Query: 262 EGW-------------------------LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQV 296
           + W                           +GD A  DEDGY++I  R  +++ V G+++
Sbjct: 468 DSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRL 527
Query: 297 A 297
Sbjct: 528 G 528

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 64/305 (20%), Positives = 119/305 (39%), Gaps = 56/305 (18%)
Query: 29  GEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNL 88
           GEH+        +  +     DF       +++A    S GTTG PK +  +HN+   ++
Sbjct: 161 GEHN-------LQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSV 213
Query: 89  EQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN--GILNVVMMYGMHMITIPKFTPET 146
            + V  +I        T Q   L  +P  H Y  +  G L V +  G  ++     +   
Sbjct: 214 RRSV--EICQF-----TQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGT-VVLAADPSATL 265
Query: 147 YIECVVKYKPTILFVVP-SLLLFL-ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQK 204
               + K++  +  +VP ++ L+L A     +   LAS++ +  G A  + +L  +   +
Sbjct: 266 CFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAE 325
Query: 205 VQREDITIRQGYGMTETSPCTLYTRFA-----------------------------IPEA 235
           +      ++Q +GM E      YTR                               +P+ 
Sbjct: 326 I---GCQLQQVFGMAEG--LVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQG 380
Query: 236 KLG---STGQLVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK 292
           ++G   + G     GY K+ +      D+ G+  +GD+   D +GY  +  R K+ I   
Sbjct: 381 EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRG 440
Query: 293 GNQVA 297
           G ++A
Sbjct: 441 GEKIA 445

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/333 (19%), Positives = 120/333 (36%), Gaps = 66/333 (19%)
Query: 9   EVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSS 68
           EV T + +  P+ R  ++V            FK+L+          +    + + + ++S
Sbjct: 159 EVDT-VASECPSLRIKLLV--SEKSCDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTS 215
Query: 69  GTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNV 128
           GT+G+PK  + S+++  +  +              D     + +    + I     ILN+
Sbjct: 216 GTSGLPKMAEHSYSSLGLKAKM-------------DAGWTGLQASDIMWTISDTGWILNI 262
Query: 129 VMM----YGMHMIT----IPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE-- 178
           +      + +   T    +PKF P   ++ +  Y    +   P +   L      + +  
Sbjct: 263 LCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFP 322
Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS-PCTLYTRFAIPEAKL 237
           HL +   VT G +   ++L +   Q      + IR+ YG TET   C +     I    +
Sbjct: 323 HLQNC--VTVGESLLPETLENWRAQT----GLDIRESYGQTETGLTCMVSKTMKIKPGYM 376
Query: 238 GSTGQL--------------------------------VMLGYLKNEEATKETVDSEGWL 265
           G+                                    +  GY+ N + T   +  + WL
Sbjct: 377 GTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL 436
Query: 266 HTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
             GD    DEDGYF  + R  ++I   G ++ P
Sbjct: 437 -LGDRGIKDEDGYFQFMGRADDIINSSGYRIGP 468

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/333 (19%), Positives = 120/333 (36%), Gaps = 66/333 (19%)
Query: 9   EVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSS 68
           EV T + +  P+ R  ++V            FK+L+          +    + + + ++S
Sbjct: 159 EVDT-VASECPSLRIKLLV--SEKSCDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTS 215
Query: 69  GTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNV 128
           GT+G+PK  + S+++  +  +              D     + +    + I     ILN+
Sbjct: 216 GTSGLPKMAEHSYSSLGLKAKM-------------DAGWTGLQASDIMWTISDTGWILNI 262
Query: 129 VMM----YGMHMIT----IPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE-- 178
           +      + +   T    +PKF P   ++ +  Y    +   P +   L      + +  
Sbjct: 263 LCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFP 322
Query: 179 HLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETS-PCTLYTRFAIPEAKL 237
           HL +   VT G +   ++L +   Q      + IR+ YG TET   C +     I    +
Sbjct: 323 HLQNC--VTVGESLLPETLENWRAQT----GLDIRESYGQTETGLTCMVSKTMKIKPGYM 376
Query: 238 GSTGQL--------------------------------VMLGYLKNEEATKETVDSEGWL 265
           G+                                    +  GY+ N + T   +  + WL
Sbjct: 377 GTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL 436
Query: 266 HTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
             GD    DEDGYF  + R  ++I   G ++ P
Sbjct: 437 -LGDRGIKDEDGYFQFMGRADDIINSSGYRIGP 468

>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp Length = 570

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 65/289 (22%), Positives = 99/289 (34%), Gaps = 64/289 (22%)
Query: 56  ISPNDLAMLPYSSGTTGVPKGVKLSHNN-CAVNLEQCVHPDIVNHIPTSDTSQETVLSVL 114
           + P D+A + ++SG+TG PKGV   H       L Q    D     P      E  L   
Sbjct: 211 VGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ----DYAGFGP-----DEVFLQCS 261
Query: 115 PF-FHIYGFNGILNVVMMYGMHMITIPKFTPE--TYIECVVKYKPTILFVVPSLLLFLAS 171
           P  +  +G    L   +++G   +      P+     E V ++  T+L +  SL  FL  
Sbjct: 262 PVSWDAFGLE--LFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVD 319
Query: 172 HPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA 231
                PE    +R    G  PA+   +     K +R+   +R G G          T  A
Sbjct: 320 E---VPEAFEGVRYAITGGEPASVPHV----AKARRDHPALRLGNGYGPAESMGFTTHHA 372
Query: 232 IPEAKL----------------------------GSTGQLVML------GYLKNEEATKE 257
           +    L                            G+ G+L +       GY+     T E
Sbjct: 373 VVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAE 432
Query: 258 TV--------DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
                       E    TGD+A    DG    V R  + +K++G +V P
Sbjct: 433 RFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEP 481

>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp Ligase Faal28 From Mycobacterium Tuberculosis Length = 480

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 73/176 (41%), Gaps = 21/176 (11%)
Query: 62  AMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV--NHIPTSDTSQETVLSVLPFFHI 119
           A L Y+SG+T  P GV  SH N  VN EQ         + IP  +++   ++S LPF+H 
Sbjct: 186 AYLQYTSGSTRTPAGVVXSHQNVRVNFEQLXSGYFADTDGIPPPNSA---LVSWLPFYHD 242
Query: 120 YGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPT------ILFVVPSLLLFLASHP 173
            G    +   ++ G   +     +P ++++   ++              P+    LA+  
Sbjct: 243 XGLVIGICAPILGGYPAVLT---SPVSFLQRPARWXHLXASDFHAFSAAPNFAFELAARR 299
Query: 174 AVTPE----HLASIREVTCGAAPATKSLIDKFKQKVQR---EDITIRQGYGMTETS 222
               +     L +I  +  G+     + I +F  +  R   ++  IR  YG+ E +
Sbjct: 300 TTDDDXAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYGLAEAT 355

>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w Mutant From Mycobacterium Tuberculosis Length = 480

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 62  AMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV--NHIPTSDTSQETVLSVLPFFHI 119
           A L Y+SG+T  P GV +SH N  VN EQ +       + IP  +++   ++S LPF+H 
Sbjct: 186 AYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSA---LVSWLPFYHD 242
Query: 120 YGF 122
            G 
Sbjct: 243 MGL 245

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	334
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	1e-119
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	1e-115
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	1e-112
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	1e-112
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	2e-99
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	6e-06
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	6e-84
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	7e-82
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	8e-82
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	5e-76
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	3e-75
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	2e-72
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	6e-72
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	6e-68
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	8e-67
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	8e-67
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	2e-51
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	5e-38
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	5e-32
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	2e-31
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	2e-30
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	5e-30
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	2e-18
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-17
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	3e-15
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	9e-15
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	2e-14
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	4e-14
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	5e-14
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	3e-13
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	2e-05
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	7e-05
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	1e-04

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  352 bits (905), Expect = e-119
 Identities = 110/329 (33%), Positives = 153/329 (46%), Gaps = 44/329 (13%)

Query: 4   IPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAM 63
                E      A   + +  + V    D   +   F +L  +   +     ISP+D+  
Sbjct: 128 QACYYEKVKDF-ARESDVK-VMCVDSAPDGCLH---FSELTQADENEAPQVDISPDDVVA 182

Query: 64  LPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN 123
           LPYSSGTTG+PKGV L+H     ++ Q V  D  N    S+   + +L VLP FHIY  N
Sbjct: 183 LPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSE---DVILCVLPMFHIYALN 239

Query: 124 GILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASI 183
            I+   +  G  ++ +PKF   + +  + KYK +I  VVP +++ +A  P +    L+S+
Sbjct: 240 SIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSL 299

Query: 184 REVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPE---AKLGST 240
           R +  G AP  K L D  + K       + QGYGMTE  P          E    K G+ 
Sbjct: 300 RMIKSGGAPLGKELEDTVRAKFP--QARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGAC 357

Query: 241 GQL-------------------------------VMLGYLKNEEATKETVDSEGWLHTGD 269
           G +                               +M GYL + EAT  T+D EGWLHTGD
Sbjct: 358 GTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGD 417

Query: 270 VAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           + Y D+D   +IVDR KELIK KG QVAP
Sbjct: 418 IGYIDDDDELFIVDRLKELIKYKGFQVAP 446

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  355 bits (913), Expect = e-115
 Identities = 108/332 (32%), Positives = 149/332 (44%), Gaps = 42/332 (12%)

Query: 4   IPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLV---TSQPPDFQLPKISPND 60
             + ++    +          I         +    F +L    T         +ISP+D
Sbjct: 167 EARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDSVEISPDD 226

Query: 61  LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIY 120
           +  LPYSSGTTG+PKGV L+H     ++ Q V  +  N    SD   + +L VLP FHIY
Sbjct: 227 VVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSD---DVILCVLPMFHIY 283

Query: 121 GFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHL 180
             N I+   +  G  ++ +PKF     +E + + K T+  +VP ++L +A         L
Sbjct: 284 ALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDL 343

Query: 181 ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPE---AKL 237
           +SIR V  GAAP  K L D    K    +  + QGYGMTE  P    +     E    K 
Sbjct: 344 SSIRVVKSGAAPLGKELEDAVNAKFP--NAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKS 401

Query: 238 GSTGQL-------------------------------VMLGYLKNEEATKETVDSEGWLH 266
           G+ G +                               +M GYL N  AT ET+D +GWLH
Sbjct: 402 GACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLH 461

Query: 267 TGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           TGD+   D+D   +IVDR KELIK KG QVAP
Sbjct: 462 TGDIGLIDDDDELFIVDRLKELIKYKGFQVAP 493

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  336 bits (865), Expect = e-112
 Identities = 94/332 (28%), Positives = 156/332 (46%), Gaps = 46/332 (13%)

Query: 4   IPQLLEVGTKIGATLPNFRGTIVVGGEHDKS-----KNIFGFKQLVTSQPPDFQLPKISP 58
             + L+    +  T+   +  +++  + D                   Q   F+  ++  
Sbjct: 131 SKKGLDKVITVQKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDR 190

Query: 59  -NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF 117
              +A++  SSG+TG+PKGV+L+H N          P   N +    +    VL+V+PF 
Sbjct: 191 KEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQV----SPGTAVLTVVPFH 246

Query: 118 HIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTP 177
           H +G    L  ++  G  ++ + KF  ET+++ +  YK T + +VP+L   L     +  
Sbjct: 247 HGFGMFTTLGYLIC-GFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNK 305

Query: 178 EHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKL 237
             L+++ E+  G AP +K + +   ++       +RQGYG+TET+   + T     + K 
Sbjct: 306 YDLSNLVEIASGGAPLSKEVGEAVARRFN--LPGVRQGYGLTETTSAIIITPEG--DDKP 361

Query: 238 GSTGQL-------------------------------VMLGYLKNEEATKETVDSEGWLH 266
           G++G++                               +M GY+ N EATKE +D EGWLH
Sbjct: 362 GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLH 421

Query: 267 TGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           TGD+ YYDE+ +F+IVDR K LIK KG QV P
Sbjct: 422 TGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPP 453

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  335 bits (862), Expect = e-112
 Identities = 97/332 (29%), Positives = 151/332 (45%), Gaps = 46/332 (13%)

Query: 4   IPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISP----- 58
             + L+    +   LP  +  I++  + D       +  + +  PP F      P     
Sbjct: 129 SKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDR 188

Query: 59  -NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF 117
              +A++  SSG+TG+PKGV L H    V       P   N I         +LSV+PF 
Sbjct: 189 DKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQII----PDTAILSVVPFH 244

Query: 118 HIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTP 177
           H +G    L  ++  G  ++ + +F  E ++  +  YK     +VP+L  F A    +  
Sbjct: 245 HGFGMFTTLGYLIC-GFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK 303

Query: 178 EHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKL 237
             L+++ E+  G AP +K + +   ++       IRQGYG+TET+   L T     + K 
Sbjct: 304 YDLSNLHEIASGGAPLSKEVGEAVAKRFH--LPGIRQGYGLTETTSAILITPEG--DDKP 359

Query: 238 GSTGQL-------------------------------VMLGYLKNEEATKETVDSEGWLH 266
           G+ G++                               +M GY+ N EAT   +D +GWLH
Sbjct: 360 GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLH 419

Query: 267 TGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           +GD+AY+DED +F+IVDR K LIK KG QVAP
Sbjct: 420 SGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAP 451

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  302 bits (777), Expect = 2e-99
 Identities = 80/342 (23%), Positives = 132/342 (38%), Gaps = 58/342 (16%)

Query: 6   QLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIF-------GFKQLVTSQPPDFQLPKISP 58
            L +                    E    + +F          +++ S   DF+  K++P
Sbjct: 119 ILNDSEATTLVVHSMLYENFKPVLEKTGVERVFVVGGEVNSLSEVMDSGSEDFENVKVNP 178

Query: 59  -NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFF 117
             D+A++PY+ GTTG+PKGV L+H N A N  Q              +  +T++  +P F
Sbjct: 179 EEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-------GLSHMDTIVGCMPMF 231

Query: 118 HIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLAS--HPAV 175
           H   F  ++N+++  G   + +  F  E   E + KYK T  + VP  L  L +    + 
Sbjct: 232 HSAEFG-LVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSN 290

Query: 176 TPEHLASIREVTCGAAPATKSLIDKFKQ----KVQREDITIRQGYGMTETSPCTLYTRFA 231
                + ++    GA P   +L++K  +    K     +   Q +GMTE  P        
Sbjct: 291 KTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPL 350

Query: 232 IPEAKLGSTGQL-------------------------------VMLGYLKNEEATKET-- 258
             + K  + G                                 +  GY K E+  +E   
Sbjct: 351 RLD-KSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWW 409

Query: 259 --VDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
                  +  TGDV + DE+G+ +  DR KE+IK KG  +AP
Sbjct: 410 YDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAP 451

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score = 46.8 bits (112), Expect = 6e-06
 Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 295 QVAPYKKLAGGVKFLETIPRNPAGKVLRNELK 326
           +++ YK++   V+F+E +PR  +GK+LR  L+
Sbjct: 507 RISGYKRVRE-VEFVEELPRTASGKLLRRLLR 537

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  261 bits (669), Expect = 6e-84
 Identities = 77/394 (19%), Positives = 132/394 (33%), Gaps = 96/394 (24%)

Query: 12  TKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTT 71
             I     +     ++        +      +    P +      + +D+A + ++SGTT
Sbjct: 116 DDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTT 175

Query: 72  GVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMM 131
           G  K V  +  N   +   C                   LSVLP +HI G + +L  V+ 
Sbjct: 176 GPQKAVPQTFRNHYASAIGCKES-------LGFDRDTNWLSVLPIYHISGLSVLLRAVI- 227

Query: 132 YGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAA 191
            G  +  + KF  E  +  +   + T + +VP  L +L            +++++  G A
Sbjct: 228 EGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---EPYNLQKILLGGA 284

Query: 192 PATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ--------- 242
             + ++I+   Q     ++ I   +GMTET    L     +  A+  + G          
Sbjct: 285 KLSATMIETALQY----NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKI 340

Query: 243 ----------------LVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTK 286
                            VM GYL   + T    +  G+ +TGD+A  D +GY  I DR K
Sbjct: 341 KNPNKEGHGELMIKGANVMNGYLYPTDLTGTFEN--GYFNTGDIAEIDHEGYVMIYDRRK 398

Query: 287 ELIKVKGNQVAP------------------------------------------------ 298
           +LI   G  + P                                                
Sbjct: 399 DLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKAQLIAY 458

Query: 299 -YKKLAG-----GVKFLETIPRNPAGKVLRNELK 326
             K LA        + ++T+P    GK+ RN+L 
Sbjct: 459 LSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLY 492

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  255 bits (655), Expect = 7e-82
 Identities = 82/323 (25%), Positives = 124/323 (38%), Gaps = 48/323 (14%)

Query: 5   PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAML 64
           P   +    I A +     T+   G                     F       +DLA +
Sbjct: 108 PSKRDGIAAIAAKVGATVETLGPDGRGS-------LTDAAAGASEAFATIDRGADDLAAI 160

Query: 65  PYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG 124
            Y+SGTTG  KG  LSH+N A N    V            T  + ++  LP +H +G   
Sbjct: 161 LYTSGTTGRSKGAMLSHDNLASNSLTLVDY-------WRFTPDDVLIHALPIYHTHGLFV 213

Query: 125 ILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIR 184
             NV +     MI +PKF P+  ++ + +   T+L  VP+    L   P +T E    +R
Sbjct: 214 ASNVTLFARGSMIFLPKFDPDKILDLMAR--ATVLMGVPTFYTRLLQSPRLTKETTGHMR 271

Query: 185 EVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTR----------FAIP- 233
               G+AP       ++     +    + + YGMTET+  T               A+P 
Sbjct: 272 LFISGSAPLLADTHREWSA---KTGHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPG 328

Query: 234 -EAKL-----------GSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDE 275
             A++           G  G +      V  GY +  E TK     +G+  TGD+   DE
Sbjct: 329 VSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE 388

Query: 276 DGYFYIVDRTKELIKVKGNQVAP 298
            GY +I+ R K+L+   G  V P
Sbjct: 389 RGYVHILGRGKDLVITGGFNVYP 411

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  256 bits (656), Expect = 8e-82
 Identities = 74/323 (22%), Positives = 117/323 (36%), Gaps = 49/323 (15%)

Query: 5   PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAML 64
                V   I A            G            + + S   D    +   +D   +
Sbjct: 123 APSAPVIDAIRAQADPPGTVTDWIGADS-------LAERLRSAAADEPAVECGGDDNLFI 175

Query: 65  PYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG 124
            Y+SGTTG PKGV  +H +                       ++ +L  LP FH+     
Sbjct: 176 MYTSGTTGHPKGVVHTHESVHSAASSWAST-------IDVRYRDRLLLPLPMFHVAALTT 228

Query: 125 ILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIR 184
           ++   M  G+ +I++P+F        +V+ +  I   VP++L F+   P          R
Sbjct: 229 VIFSAM-RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFR 287

Query: 185 EVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ-- 242
               G AP  ++LI  +  K    +I + QGY +TE+              K GS G+  
Sbjct: 288 YFITGGAPMPEALIKIYAAK----NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRAT 343

Query: 243 ---------------------------LVMLGYLKNEEATKETVDSEGWLHTGDVAYYDE 275
                                      +++  Y    EAT++  D  GW  TGD+   D+
Sbjct: 344 MFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFD-NGWFRTGDIGEIDD 402

Query: 276 DGYFYIVDRTKELIKVKGNQVAP 298
           +GY YI DR K++I   G  V P
Sbjct: 403 EGYLYIKDRLKDMIISGGENVYP 425

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  241 bits (618), Expect = 5e-76
 Identities = 66/326 (20%), Positives = 118/326 (36%), Gaps = 44/326 (13%)

Query: 5   PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKN-IFGFKQLVTSQPPDFQLPKISPNDLAM 63
             L++  T+   +  +    ++V    +        F++L+ +  P  +      +D+A 
Sbjct: 128 GALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAF 187

Query: 64  LPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN 123
             YSSG+TG PKG   +H N     E    P  +  I       + V S    F  YG  
Sbjct: 188 WLYSSGSTGKPKGTVHTHANLYWTAELYAKP--ILGI----AENDVVFSAAKLFFAYGLG 241

Query: 124 GILNVVMMYGMHMITIP-KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLAS 182
             L   +  G   I +  + T +     +V+++PT+ + VP+L   +   P +      +
Sbjct: 242 NGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVA 301

Query: 183 IREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ 242
           IR  T       + + ++F          I  G G TE     L  R      + G+TG+
Sbjct: 302 IRICTSAGEALPREIGERFTAHF---GCEILDGIGSTEMLHIFLSNRAG--AVEYGTTGR 356

Query: 243 ------------------------------LVMLGYLKNEEATKETVDSEGWLHTGDVAY 272
                                            + Y  N E ++ T     W+ +GD   
Sbjct: 357 PVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFL-GEWIRSGDKYC 415

Query: 273 YDEDGYFYIVDRTKELIKVKGNQVAP 298
              +G +    R+ +++KV G  V+P
Sbjct: 416 RLPNGCYVYAGRSDDMLKVSGQYVSP 441

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  238 bits (611), Expect = 3e-75
 Identities = 71/326 (21%), Positives = 112/326 (34%), Gaps = 56/326 (17%)

Query: 5   PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAML 64
               ++   +  +L   +    +G           FK L +  P     P+    D  ++
Sbjct: 111 TDYRDIVAGVLPSLGGVKKAYAIGDGSG---PFAPFKDLASDTPFS--APEFGAADGFVI 165

Query: 65  PYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG 124
            +++   G P+G  +S  N  +     V            T  +  L +LP FH+ G   
Sbjct: 166 IHTAAVGGRPRGALISQGNLLIAQSSLVDA-------WRLTEADVNLGMLPLFHVTGLGL 218

Query: 125 ILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIR 184
           +L +    G   +   KF P      +  +K T++     +L  +    A  P  LAS+R
Sbjct: 219 MLTLQQA-GGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--PAQLASLR 275

Query: 185 EVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGSTGQ-- 242
            VT    P T    +         + T    +G +ETS  + +        +  S G+  
Sbjct: 276 AVTGLDTPETIERFEA-----TCPNATFWATFGQSETSGLSTFAP---YRDRPKSAGRPL 327

Query: 243 ----------------------------LVMLGYLKNEEATKETVDSEGWLHTGDVAYYD 274
                                        V  GY  N  AT+      GW HTGD+  +D
Sbjct: 328 FWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFR-NGWHHTGDMGRFD 386

Query: 275 EDGYFYIVDRT--KELIKVKGNQVAP 298
            DGY +   R   KELIK  G  V P
Sbjct: 387 ADGYLFYAGRAPEKELIKTGGENVYP 412

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  231 bits (592), Expect = 2e-72
 Identities = 67/291 (23%), Positives = 108/291 (37%), Gaps = 46/291 (15%)

Query: 43  LVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPT 102
           +                D A++ Y+SGTTG PKG  +     A  L+             
Sbjct: 139 VDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQW----- 193

Query: 103 SDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVV 162
             T ++ ++  LP FH++G    +   +  G  +  + +F+ E      +    T+LF V
Sbjct: 194 --TGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAR-ELNDGATMLFGV 250

Query: 163 PSLLLFLASHPAVTPEH---LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMT 219
           P++   +A      PE    LA  R +  G+A       ++           + + YGMT
Sbjct: 251 PTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAA---ATGRRVIERYGMT 307

Query: 220 ETSPCTLYTR----------FAIP--EAKL-------------GSTGQL------VMLGY 248
           ET   T                +P  E +L              S G++      +   Y
Sbjct: 308 ETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEY 367

Query: 249 LKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRT-KELIKVKGNQVAP 298
           L   +AT      +G+  TGD+A  D DGY  IV R   +LIK  G ++  
Sbjct: 368 LNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGA 418

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  230 bits (589), Expect = 6e-72
 Identities = 64/284 (22%), Positives = 106/284 (37%), Gaps = 40/284 (14%)

Query: 46  SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDT 105
           S  P  + P+  P   A + Y+SGTTG+PK   +        +           +     
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMST-----QVGLRHG 194

Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
               VL ++P +H+ GF  +L   +      + + +F P   ++ V + + T LF  P+ 
Sbjct: 195 RHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTH 254

Query: 166 LLFLASHPAVTPEH--LASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP 223
           L  LA+  A       L S+R VT   A    ++++      Q         YG TE   
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETV---HQHLPGEKVNIYGTTEAMN 311

Query: 224 CTLYTR-------FAIP--EAKL-------------GSTGQL-------VMLGYLKNEEA 254
                +             E ++             G  G+L         +GYL   +A
Sbjct: 312 SLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQA 371

Query: 255 TKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           T E +  +GW  T DVA +  +G   I+ R  ++I   G  + P
Sbjct: 372 TAEKLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHP 414

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  220 bits (564), Expect = 6e-68
 Identities = 72/324 (22%), Positives = 127/324 (39%), Gaps = 52/324 (16%)

Query: 8   LEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYS 67
             +  ++ + LP  +  IV G           F  L        +LP++  +D+A L  S
Sbjct: 138 RSLARQVQSKLPTLKNIIVAGEAE-------EFLPLEDLHTEPVKLPEVKSSDVAFLQLS 190

Query: 68  SGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN-GIL 126
            G+TG+ K +  +H++   +L++ V  ++              L+ LP  H Y  +   +
Sbjct: 191 GGSTGLSKLIPRTHDDYIYSLKRSV--EVCWL-----DHSTVYLAALPMAHNYPLSSPGV 243

Query: 127 NVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREV 186
             V+  G  ++  P  +P+     + + K TI  +VP L +      +   + L+S++ +
Sbjct: 244 LGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVL 303

Query: 187 TCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP------------- 233
             G A  +     + K        T++Q +GM E      YTR   P             
Sbjct: 304 QVGGAKFSAEAARRVKAVF---GCTLQQVFGMAEGLVN--YTRLDDPEEIIVNTQGKPMS 358

Query: 234 ---EAKL----------GSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYD 274
              E+++          G TG L       + GY K EE    +   +G+  TGD+    
Sbjct: 359 PYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLT 418

Query: 275 EDGYFYIVDRTKELIKVKGNQVAP 298
            DGY  +  R K+ I   G +VA 
Sbjct: 419 RDGYIVVEGRAKDQINRGGEKVAA 442

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  219 bits (561), Expect = 8e-67
 Identities = 59/321 (18%), Positives = 114/321 (35%), Gaps = 52/321 (16%)

Query: 13  KIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTG 72
                  + R   ++    +        +  +     DF       +++A    S GTTG
Sbjct: 143 TFVTEHSSIRVVQLLNDSGE-----HNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTG 197

Query: 73  VPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNV-VMM 131
            PK +  +HN+   ++ + V  +I        T Q   L  +P  H Y  +   ++ V +
Sbjct: 198 TPKLIPRTHNDYYYSVRRSV--EICQF-----TQQTRYLCAIPAAHNYAMSSPGSLGVFL 250

Query: 132 YGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFL--ASHPAVTPEHLASIREVTCG 189
            G  ++     +       + K++  +  +VP  +     A     +   LAS++ +  G
Sbjct: 251 AGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVG 310

Query: 190 AAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP---------------- 233
            A  + +L  +   ++      ++Q +GM E      YTR                    
Sbjct: 311 GARLSATLAARIPAEI---GCQLQQVFGMAEGLVN--YTRLDDSAEKIIHTQGYPMCPDD 365

Query: 234 EAKL----------GSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDG 277
           E  +          G  G+L         GY K+ +      D+ G+  +GD+   D +G
Sbjct: 366 EVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEG 425

Query: 278 YFYIVDRTKELIKVKGNQVAP 298
           Y  +  R K+ I   G ++A 
Sbjct: 426 YITVQGREKDQINRGGEKIAA 446

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  218 bits (557), Expect = 8e-67
 Identities = 57/325 (17%), Positives = 116/325 (35%), Gaps = 50/325 (15%)

Query: 8   LEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYS 67
            +    +     +    +++  +     +      + T             +++A    S
Sbjct: 143 NQFIDSLHDVNLSPEIILMLNHQAT---DFGLLDWIETPAETFVDFSSTPADEVAFFQLS 199

Query: 68  SGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN--GI 125
            G+TG PK +  +HN+   ++      +I         S   +L  LP  H +  +  G 
Sbjct: 200 GGSTGTPKLIPRTHNDYDYSVRASA--EICGL-----NSNTRLLCALPAPHNFMLSSPGA 252

Query: 126 LNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIRE 185
           L V+   G  ++  P   P      + +++  +  +VPS ++      A   + + S++ 
Sbjct: 253 LGVLHA-GGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKL 311

Query: 186 VTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP------------ 233
           +  G A   +SL  +  + +   +  ++Q +GM E      YTR                
Sbjct: 312 LQVGGASFPESLARQVPEVL---NCKLQQVFGMAEGLVN--YTRLDDSDEQIFTTQGRPI 366

Query: 234 ----EAKL----------GSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYY 273
               E K+          G  G L         GY ++ E   +  D + + ++GD+   
Sbjct: 367 SSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQR 426

Query: 274 DEDGYFYIVDRTKELIKVKGNQVAP 298
             DG   +V R K+ I   G ++A 
Sbjct: 427 TPDGNLRVVGRIKDQINRGGEKIAS 451

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  177 bits (451), Expect = 2e-51
 Identities = 82/327 (25%), Positives = 141/327 (43%), Gaps = 55/327 (16%)

Query: 5   PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAML 64
           P LL +   I   L   +  +V+  +  +      +++ +  +    ++P+        +
Sbjct: 127 PNLLPLVEAIRGELKTVQHFVVMDEKAPE--GYLAYEEALGEEADPVRVPE---RAACGM 181

Query: 65  PYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG 124
            Y++GTTG+PKGV  SH    ++       D    +   D     VL V+P FH+  +  
Sbjct: 182 AYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTA-LSEKDV----VLPVVPMFHVNAWCL 236

Query: 125 ILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIR 184
                ++    ++  P+  P + +E       T    VP++ L LA +   T   L ++R
Sbjct: 237 PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLR 296

Query: 185 EVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP----CTLYTRF---------- 230
            +  G + A +SLI +F+    R  + +RQGYG+TETSP      + +            
Sbjct: 297 RLVVGGSAAPRSLIARFE----RMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLT 352

Query: 231 -------AIP--EAKL-----------GST-GQL------VMLGYLKNEEATKETVDSEG 263
                   IP    ++           G   G++      +  GY  NEEAT+  +  +G
Sbjct: 353 LKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDG 412

Query: 264 WLHTGDVAYYDEDGYFYIVDRTKELIK 290
           +  TGD+A +DE+GY  I DR K+LIK
Sbjct: 413 FFRTGDIAVWDEEGYVEIKDRLKDLIK 439

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  141 bits (358), Expect = 5e-38
 Identities = 50/327 (15%), Positives = 108/327 (33%), Gaps = 61/327 (18%)

Query: 13  KIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTG 72
            + +  P+ R  ++V  +         FK+L+          +    + + + ++SGT+G
Sbjct: 162 TVASECPSLRIKLLVSEKSCD--GWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSG 219

Query: 73  VPKGVKLSHNNCAVNLE-----QCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILN 127
           +PK  + S+++  +  +       +    +     SDT             +        
Sbjct: 220 LPKMAEHSYSSLGLKAKMDAGWTGLQASDI-MWTISDTGWIL-------NILCSLMEPWA 271

Query: 128 V---VMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIR 184
           +     ++ +     PKF P   ++ +  Y    +   P +   L     ++      ++
Sbjct: 272 LGACTFVHLL-----PKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQ 325

Query: 185 EVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET-----SPCTLYTR-----FAIP- 233
                        ++ ++ +     + IR+ YG TET        T+  +      A   
Sbjct: 326 NCVTVGESLLPETLENWRAQT---GLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASC 382

Query: 234 -----------EAKLGSTGQLV-----------MLGYLKNEEATKETVDSEGWLHTGDVA 271
                          G+ G +              GY+ N + T   +    +   GD  
Sbjct: 383 YDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRG 441

Query: 272 YYDEDGYFYIVDRTKELIKVKGNQVAP 298
             DEDGYF  + R  ++I   G ++ P
Sbjct: 442 IKDEDGYFQFMGRADDIINSSGYRIGP 468

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score =  124 bits (314), Expect = 5e-32
 Identities = 68/329 (20%), Positives = 109/329 (33%), Gaps = 86/329 (26%)

Query: 46  SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDT 105
           ++   +Q   I  ND+A L Y+SG+T  PKGV +SH+N   NL +     I         
Sbjct: 154 NRSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNK-----IFTSFHM--N 206

Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFT----PETYIECVVKYKPTILFV 161
            +  + S LP  H  G  G +   +  G+  I +  F+    P ++++ + KYK TI   
Sbjct: 207 DETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISG- 265

Query: 162 VPSLLLFLASHPAVTPEHLA-----SIREVTCGAAPATKSLIDKFKQKVQ----REDITI 212
            P+          +  E        S      GA P  +  ++ F Q  +    R++   
Sbjct: 266 SPNFAYDYCVK-RIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKE-AF 323

Query: 213 RQGYGMTETS-----------PCTLY---------------------------------- 227
              YG+ E +             TL                                   
Sbjct: 324 YPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEV 383

Query: 228 ------TRFAIPEAKLGS---TGQLVMLGYLKNEEATKET--------VDSEGWLHTGDV 270
                 T       ++G        V  GY    E T+            S  +L TGD+
Sbjct: 384 KIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDL 443

Query: 271 AYYDEDGYFYIVDRTKELIKVKGNQVAPY 299
            +   +   Y+  R K+LI + G    P 
Sbjct: 444 GFLH-ENELYVTGRIKDLIIIYGKNHYPQ 471

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score =  122 bits (307), Expect = 2e-31
 Identities = 61/320 (19%), Positives = 98/320 (30%), Gaps = 82/320 (25%)

Query: 42  QLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIP 101
            L    P  +   +      A L Y+SG+T  P GV +SH N  VN EQ +         
Sbjct: 166 LLDLDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMS-GYFADTD 224

Query: 102 TSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFT----PETYIECVVKYKPT 157
                   ++S LPF+H  G    +   ++ G   +     +    P  ++  +      
Sbjct: 225 GIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA 284

Query: 158 ILFVVPSLLLFLASHPAVTPEHLA-----SIREVTCGAAPATKSLIDKFKQKVQ----RE 208
                P+    LA+    T + +A     +I  +  G+     + I +F  +      +E
Sbjct: 285 FS-AAPNFAFELAAR-RTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQE 342

Query: 209 DITIRQGYGMTE-TSPCT-----------------LYTRFAIPEAKLGST---------- 240
              IR  Y + E T                     L    A P A  G+T          
Sbjct: 343 R-VIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS 401

Query: 241 -------------------------GQLVMLGYLKNEEATKET-----------VDSEGW 264
                                    G  V  GY +  + ++ T                W
Sbjct: 402 PIVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPW 461

Query: 265 LHTGDVAYYDEDGYFYIVDR 284
           L TGD  +   DG  +I+ R
Sbjct: 462 LRTGDSGFVT-DGKMFIIGR 480

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  120 bits (303), Expect = 2e-30
 Identities = 69/334 (20%), Positives = 116/334 (34%), Gaps = 80/334 (23%)

Query: 13  KIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLP----KISPNDLAMLPYSS 68
           +  A   +        G       I  F++ +    P F+ P         D+ ++ +SS
Sbjct: 176 EAHAECGDIPLKKAKVGGDVLEGWI-DFRKELEESSPIFERPTGEVSTKNEDICLVYFSS 234

Query: 69  GTTGVPKGVKLSHN-----NCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFN 123
           GT G PK V+  +             Q V  D + H   +D+                  
Sbjct: 235 GTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGL-HYTVADSGWGK-------CVWGKLY 286

Query: 124 GILNV---VMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHL 180
           G       V +Y        +F  +  +E   KY  T     P++  FL     ++  + 
Sbjct: 287 GQWIAGCAVFVYDY-----DRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNF 340

Query: 181 ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTET------SPCTLYTRFAIPE 234
           ++++       P    + ++F +      I + +G+G TET       P          E
Sbjct: 341 STLKYAVVAGEPLNPEVFNRFLEFT---GIKLMEGFGQTETVVTIATFPWM--------E 389

Query: 235 AKLGS------------------------TGQLV-----------MLGYLKNEEATKETV 259
            K GS                         G++V            + Y K+ E T+ET 
Sbjct: 390 PKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW 449

Query: 260 DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG 293
             +G+ HTGD+A+ DEDGY + V R  ++IK  G
Sbjct: 450 -HDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSG 482

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A* Length = 369

 Score = 84.0 bits (207), Expect = 2e-18
 Identities = 38/203 (18%), Positives = 57/203 (28%), Gaps = 30/203 (14%)

Query: 47  QPPDFQLPKISPND-LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDT 105
           +P    +P+  P D    +  S GTTG PK V          +   +          S  
Sbjct: 78  EPVANLVPQGLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGN 137

Query: 106 SQETVLSVLP-FFHIYGFNGILNVVMMYGMHMITIP-------KFTPETYIECVVKY--- 154
                L+ +P   HI G        +  G    +I        +   E     V KY   
Sbjct: 138 ----TLAAIPTGPHIVGA-INKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHH 192

Query: 155 ------------KPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFK 202
                           L   P +L  L   P V  +   S+ ++T G        I    
Sbjct: 193 LVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIA 252

Query: 203 QKVQREDITIRQGYGMTETSPCT 225
            ++   D      YG T     +
Sbjct: 253 SEIL-PDCEFSASYGSTSALGVS 274

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A* Length = 521

 Score = 80.7 bits (200), Expect = 4e-17
 Identities = 50/283 (17%), Positives = 87/283 (30%), Gaps = 63/283 (22%)

Query: 42  QLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIP 101
               ++ P  +   +  +D   + ++SGTTG PKGV++SH+N  ++    +  D    +P
Sbjct: 128 SAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDN-LLSFTNWMIEDAAFDVP 186

Query: 102 TSDTSQETVLSVLPF------FHIYGFNGILNVVMMYGMHMITIPKFT---PETYIECVV 152
                   +L+  P+       +           +  G  +  +PK      +     + 
Sbjct: 187 KQP----QMLAQPPYSFDLSVMYWAP-------TLALGGTLFALPKELVADFKQLFTTIA 235

Query: 153 KYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITI 212
           +    I    PS               + ++          T S   K  ++       I
Sbjct: 236 QLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFP--SAKI 293

Query: 213 RQGYGMTETSPCTLYTRFAIPEAKL-----------------------------GSTGQL 243
              YG TE +     +   I    +                             G  G++
Sbjct: 294 INAYGPTEATVAL--SAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEI 351

Query: 244 ------VMLGYLKNEEATKET-VDSEG-WL-HTGDVAYYDEDG 277
                 V  GYL N E T E     +G    HTGD+    ED 
Sbjct: 352 IVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDN 394

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} Length = 562

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 54/308 (17%), Positives = 95/308 (30%), Gaps = 51/308 (16%)

Query: 5   PQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAML 64
             +  V       +     T V+  ++        F + +++Q     L     N  A L
Sbjct: 127 AAMAFVCDNNFDGVELPPETKVLDTKNQ------SFIENLSTQDTSDILNNYPENLDAYL 180

Query: 65  PYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG 124
            Y+SG+TG PKGV++S +N   +        I N      + +   +          F+ 
Sbjct: 181 LYTSGSTGTPKGVRVSRHN-LSSFSDAWGKLIGNV--APKSLELGGVGKFLCLASRAFDV 237

Query: 125 -ILNVVM--MYGMHMITIPK-FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHL 180
            I  + +   +G+  +T  +    +       +   T   +VPSLL          PE  
Sbjct: 238 HIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDA 293

Query: 181 ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAK---- 236
             +  +  G    T      +      + + +   YG TE +      R           
Sbjct: 294 PHLVYLGVGGEKMTPRTQQIWS---SSDRVALVNVYGPTEVTIGCSAGRILPDSDTRCIG 350

Query: 237 --------------------LGSTGQL------VMLGYLKNEEATKETVDSEGWLH-TGD 269
                                G  G+L      V  GYL   +A      +   ++ TGD
Sbjct: 351 HPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGD 410

Query: 270 VAYYDEDG 277
           +   D D 
Sbjct: 411 IVRMDADS 418

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis} Length = 1304

 Score = 74.2 bits (183), Expect = 9e-15
 Identities = 50/282 (17%), Positives = 85/282 (30%), Gaps = 65/282 (23%)

Query: 42  QLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIP 101
           Q    +        I PND A + Y+SGTTG PKG   +H N            I   + 
Sbjct: 590 QTRFEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHAN------------IQGLVK 637

Query: 102 TSDTSQETVLSVLPFFHIYGFNG-ILNVVM--MYGMHMITIPK---FTPETYIECVVKYK 155
             D    +          Y F+    +     +    +I   +      E   + +++  
Sbjct: 638 HVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQEN 697

Query: 156 PTILFVVPSLLLFLASHPAVTPEHLASIREVTCG--AAPATKSLIDKFKQKVQREDITIR 213
             ++F   +L   L        + +  +R +  G   A      + K  + +      + 
Sbjct: 698 VNVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASV--PHVRKALRIMG--PGKLI 750

Query: 214 QGYGMTETSPCTLYTRFAIPEAK--------------------------LGSTGQL---- 243
             YG TE +                                         G+ G+L    
Sbjct: 751 NCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISG 810

Query: 244 --VMLGYLKNEEATKET-VD---SEGWL--HTGDVAYYDEDG 277
             V  GY+   + TKE  ++     G     TGD+A +  DG
Sbjct: 811 MGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDG 852

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A* Length = 620

 Score = 72.9 bits (180), Expect = 2e-14
 Identities = 32/206 (15%), Positives = 60/206 (29%), Gaps = 36/206 (17%)

Query: 46  SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDT 105
           + P     P  + + +A + +SSGTTG PK +  +H              I         
Sbjct: 151 AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAG------------ITRLCLGQSF 198

Query: 106 SQETVLSVLPFFHIYGFN-------GILNVVMMYGMHMITIPK--FTPETYIECVVKYKP 156
                           F+       G L    + G   +        P    + + +   
Sbjct: 199 LAFAPQMRFLVNSPLSFDAATLEIWGAL----LNGGCCVLNDLGPLDPGVLRQLIGERGA 254

Query: 157 TILFVVPSLLLFLASHPAVTPEHLASIREVTCG--AAPATKSLIDKFKQKVQREDITIRQ 214
              ++  SL   L       P+ L  +R++  G          + +   +     + +  
Sbjct: 255 DSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSV--PHVRRALLRH--PRLHLVN 307

Query: 215 GYGMTETSPCTLYTRFAIPEAKLGST 240
           GYG TE +  T      + +  L   
Sbjct: 308 GYGPTENTTFT--CCHVVTDDDLEED 331

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 71.8 bits (177), Expect = 4e-14
 Identities = 30/183 (16%), Positives = 62/183 (33%), Gaps = 35/183 (19%)

Query: 54  PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD-----TSQE 108
             +  ++   + Y+SG+TG PKGV++++N             +V+    +       + +
Sbjct: 139 HAVKGDENFYIIYTSGSTGNPKGVQITYNC------------LVSFTKWAVEDFNLQTGQ 186

Query: 109 TVLSVLPF------FHIYGFNGILNVVMMYGMHMITIPKFT---PETYIECVVKYKPTIL 159
             L+  PF        IY         ++ G  +  I K     P+     + +    + 
Sbjct: 187 VFLNQAPFSFDLSVMDIYP-------SLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVW 239

Query: 160 FVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMT 219
              PS         + +   L +++            +  K  ++      TI   YG T
Sbjct: 240 TSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFP--KATIMNTYGPT 297

Query: 220 ETS 222
           E +
Sbjct: 298 EAT 300

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 71.8 bits (177), Expect = 5e-14
 Identities = 31/200 (15%), Positives = 57/200 (28%), Gaps = 41/200 (20%)

Query: 45  TSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD 104
                  Q   +  ++   + Y+SG+TG PKGV++S  N            + +      
Sbjct: 129 NEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAAN------------LQSFTDWIC 176

Query: 105 -----TSQETVL---------SVLPFFHIYGFNGILNVVMMYGMHMITIPKFT---PETY 147
                +  +  L         SV+  +        L      G  +  + K     P+  
Sbjct: 177 ADFPVSGGKIFLNQAPFSFDLSVMDLY------PCL----QSGGTLHCVTKDAVNKPKVL 226

Query: 148 IECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQR 207
            E + K    +    PS +      P  + + L               S+     ++   
Sbjct: 227 FEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFP- 285

Query: 208 EDITIRQGYGMTETSPCTLY 227
               I   YG TE +     
Sbjct: 286 -KAKIFNTYGPTEATVAVTS 304

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1 Length = 563

 Score = 69.4 bits (171), Expect = 3e-13
 Identities = 39/200 (19%), Positives = 76/200 (38%), Gaps = 44/200 (22%)

Query: 54  PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSD-----TSQE 108
                 DLA + Y+SGTTG PKG  L H              I N     +     T ++
Sbjct: 177 VPSKSTDLAYVIYTSGTTGNPKGTMLEHKG------------ISNLKVFFENSLNVTEKD 224

Query: 109 TVLSVLPF------FHIYG--FNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILF 160
            +            + ++     G    +++               + + + + + T++ 
Sbjct: 225 RIGQFASISFDASVWEMFMALLTGASLYIILKDTIN------DFVKFEQYINQKEITVIT 278

Query: 161 VVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTE 220
           + P+ ++ L       PE + SI+ +    +  + SL++K+K+KV          YG TE
Sbjct: 279 LPPTYVVHLD------PERILSIQTLITAGSATSPSLVNKWKEKVT-----YINAYGPTE 327

Query: 221 TSPCTLYTRFAIPEAKLGST 240
           T+ C   T +   +  +G +
Sbjct: 328 TTICA--TTWVATKETIGHS 345

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 40/177 (22%), Positives = 67/177 (37%), Gaps = 43/177 (24%)

Query: 67  SSGTTGVPKGVKLSHN-------NCAVNLEQC-VHP-DIVNHIPTSDTSQETVLSVLPFF 117
           SSGTTG P  +  S +         A  L    +   D+  +                  
Sbjct: 94  SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSG--------------- 138

Query: 118 HIYG-FNGILNVVMMYGMH---MITIPKFT--PETYIECVVKYKPTILFVVPSLLLFLAS 171
             YG F G L     YG      +T+P      +  I+ +  +K T L  +PS  + LA 
Sbjct: 139 --YGMFTGGLG--FQYGAERLGCLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAE 194

Query: 172 HPA---VTPEHLASIREVTCGAAPATKSLIDKFKQKVQRE-DITIRQGYGMTETSPC 224
                 + P    +++ +  GA P T    D+ ++K++R  ++     +GMTE +  
Sbjct: 195 VFQEEGIDPRET-TLKTLVIGAEPHT----DEQRRKIERMLNVKAYNSFGMTEMNGP 246

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 41/176 (23%), Positives = 61/176 (34%), Gaps = 41/176 (23%)

Query: 67  SSGTTGVPKGVKLSHN-------NCAVNLEQC-VHP-DIVNHIPTSDTSQETVLSVLPFF 117
           SSGTTG P  V  +           A ++        D V H+                 
Sbjct: 98  SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKV-HVSYG-------------- 142

Query: 118 HIYG-FNGILNVVMMYGMHMI---TIPKFT--PETYIECVVKYKPTILFVVPSLLLFLAS 171
             YG F G L     YG        IP      E  ++ +  ++P I+ V PS +L +A 
Sbjct: 143 --YGLFTGGLG--AHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIAD 198

Query: 172 HPA---VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPC 224
                 + P    S+R    GA P T  +    +Q++    I     YG++E    
Sbjct: 199 EIERQGLDPVQS-SLRIGIFGAEPWTNDMRVAIEQRM---GIDAVDIYGLSEVMGP 250

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 40/172 (23%), Positives = 64/172 (37%), Gaps = 41/172 (23%)

Query: 67  SSGTTGVPKGVKLSHN-------NCAVNLEQC-VHP-DIVNHIPTSDTSQETVLSVLPFF 117
           SSGTTG P  V  +           A ++      P D + H                  
Sbjct: 100 SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTL-HNAFG-------------- 144

Query: 118 HIYG-FNGILNVVMMYGMHMI---TIPKFT--PETYIECVVKYKPTILFVVPSLLLFLAS 171
             YG F G L   + YG   +    +P      E  ++ +  ++P I+ V PS +L L  
Sbjct: 145 --YGLFTGGLG--IHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLID 200

Query: 172 HPA---VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTE 220
                 + P    S++    GA P T++L ++ +    R  I     YG++E
Sbjct: 201 EMVRQGMDPAES-SLKIGIFGAEPWTQALRNEVE---TRVGIDALDIYGLSE 248

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	334
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	100.0
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	100.0
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	100.0
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.96
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.51
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.31
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.23
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	97.97
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	97.76
3ezx_A	215	MMCP 1, monomethylamine corrinoid protein 1; N ter	83.14

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=2.8e-54  Score=405.05  Aligned_cols=317  Identities=37%  Similarity=0.602  Sum_probs=252.9

Q ss_pred             cchhhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchH
Q psy12107          4 IPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN   83 (334)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~   83 (334)
                      +..+.+.+.++.... .+ .++.++...   .+...++++........+....+++|+++|+|||||||.||||+++|++
T Consensus       128 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~  202 (536)
T 3ni2_A          128 QACYYEKVKDFARES-DV-KVMCVDSAP---DGCLHFSELTQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKG  202 (536)
T ss_dssp             CGGGTHHHHHHHHHH-TC-EEEESSCCC---TTCEETHHHHTSCGGGCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHH
T ss_pred             ChHHHHHHHHHHhhc-Cc-eEEEecCCC---CCccCHHHHhhccccccccCCCCccCEEEEEcCCCccccchHHHhhHHH
Confidence            344555555554433 22 344444322   2456777777432222233456789999999999999999999999999


Q ss_pred             HHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeech
Q psy12107         84 CAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVP  163 (334)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p  163 (334)
                      +.+............   ......+++++.+|++|.+++...++.++..|+++++.+.+++..+++.|+++++|++.++|
T Consensus       203 l~~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P  279 (536)
T 3ni2_A          203 LITSVAQQVDGDNPN---LYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVP  279 (536)
T ss_dssp             HHHHHHHHHCSSSCS---SCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECH
T ss_pred             HHHHHHHHHhhcccc---ccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccH
Confidence            988766543322111   12568899999999999999977788899999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCccccccc---C---------
Q psy12107        164 SLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF---A---------  231 (334)
Q Consensus       164 ~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~---~---------  231 (334)
                      +++..|++.......++++||.+++||+++++++.+++++.|+  +++++|.||+||++.+++.+..   .         
T Consensus       280 ~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~  357 (536)
T 3ni2_A          280 PVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFP--QARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGAC  357 (536)
T ss_dssp             HHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCT--TSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCC
T ss_pred             HHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCC--CCCccccccccccchhhhcccccCCccccCCCCCe
Confidence            9999999987767778999999999999999999999999996  5689999999999865443210   0         


Q ss_pred             ----------------CCCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceE
Q psy12107        232 ----------------IPEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELI  289 (334)
Q Consensus       232 ----------------~~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i  289 (334)
                                      ......+..|++      ++.||+++|+.|.+.|+.+|||+|||+|++++||+++++||.||+|
T Consensus       358 G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~i  437 (536)
T 3ni2_A          358 GTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELI  437 (536)
T ss_dssp             CEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCE
T ss_pred             eEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceE
Confidence                            001122334444      7889999999999999889999999999999999999999999999


Q ss_pred             EEcCEEee---------------------------------------------------------eeeeccCcEEEeecC
Q psy12107        290 KVKGNQVA---------------------------------------------------------PYKKLAGGVKFLETI  312 (334)
Q Consensus       290 ~~~G~~i~---------------------------------------------------------~~~~~~~~i~~v~~l  312 (334)
                      |++|++|+                                                         .+++|+. |+++++|
T Consensus       438 k~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~-i~~v~~l  516 (536)
T 3ni2_A          438 KYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKR-VFFIEAI  516 (536)
T ss_dssp             EETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSE-EEECSCC
T ss_pred             EECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccE-EEEEecC
Confidence            99999999                                                         5667777 9999999


Q ss_pred             CCCCCchhhHHHHhhhhcC
Q psy12107        313 PRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       313 P~t~~GKi~r~~l~~~~~~  331 (334)
                      |+|++|||+|++|++++.+
T Consensus       517 P~t~~GKi~R~~L~~~~~~  535 (536)
T 3ni2_A          517 PKAPSGKILRKNLKEKLAG  535 (536)
T ss_dssp             CBCTTSCBCHHHHHTC---
T ss_pred             CCCCCCCeeHHHHHHHhcc
Confidence            9999999999999998764

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=1.7e-53  Score=400.84  Aligned_cols=323  Identities=31%  Similarity=0.515  Sum_probs=212.4

Q ss_pred             CcchhhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhc--CC--C---CCCCCCCCCCCCEEEEecCCCCCCCch
Q psy12107          3 NIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVT--SQ--P---PDFQLPKISPNDLAMLPYSSGTTGVPK   75 (334)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~--~~--~---~~~~~~~~~~~~~a~i~~TSGTTG~PK   75 (334)
                      .+.+..+.+.++...+|.++.+++++...+ ..+..++.+++.  ..  .   ...+.....++|+++|+|||||||.||
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK  206 (550)
T 3rix_A          128 VSKKGLQKILNVQKKLPIIQKIIIMDSKTD-YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPK  206 (550)
T ss_dssp             ECGGGHHHHHHHHHHCTTCCEEEETTCSSC-BTTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCC
T ss_pred             EcHHHHHHHHHHHhhCCCcceEEEEcCCcc-ccCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcc
Confidence            356677788888888999999888775432 234567777762  11  1   111112234579999999999999999


Q ss_pred             hhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcC
Q psy12107         76 GVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYK  155 (334)
Q Consensus        76 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~  155 (334)
                      ||+++|+++..+..........    ....+++++++.+|++|.+++.. .+.++..|+++++.+.++++.+++.|++++
T Consensus       207 gV~~th~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~  281 (550)
T 3rix_A          207 GVALPHRTACVRFSHARDPIFG----NQIIPDTAILSVVPFHHGFGMFT-TLGYLICGFRVVLMYRFEEELFLRSLQDYK  281 (550)
T ss_dssp             EEEEEHHHHHHHHHHHTCTTTS----CCCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSCCHHHHHHHHHHTT
T ss_pred             hhhhhHHHHHHHHHHhhhhhcc----ccCCCCcEEEEechHHHHHHHHH-HHHHHHcCCEEEEeCCCCHHHHHHHHHHcC
Confidence            9999999998877655443211    12568899999999999999876 678899999999999999999999999999


Q ss_pred             CeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC---
Q psy12107        156 PTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI---  232 (334)
Q Consensus       156 ~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~---  232 (334)
                      +|+++++|+++..|++.......++++||.+++||+++++++.+++.+.|+.  ..++|.||+||++.+++......   
T Consensus       282 ~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~--~~v~~~YG~TE~~~~~~~~~~~~~~~  359 (550)
T 3rix_A          282 IQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFHL--PGIRQGYGLTETTSAILITPEGDDKP  359 (550)
T ss_dssp             CSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTTC--SCCEEEEECGGGSSEEEECCTTCCCT
T ss_pred             CeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHcCC--CccccccCcCccccceecCCCCCCCC
Confidence            9999999999999998877667788999999999999999999999999974  24889999999987655432211   


Q ss_pred             --------------------CCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCC
Q psy12107        233 --------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTK  286 (334)
Q Consensus       233 --------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~  286 (334)
                                          .+...+..|++      ++.||+++|+.|.+.|+.+|||+|||+|++++||+++++||.|
T Consensus       360 ~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~d  439 (550)
T 3rix_A          360 GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLK  439 (550)
T ss_dssp             TEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----
T ss_pred             CCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecch
Confidence                                11122344544      7889999999999999889999999999999999999999999


Q ss_pred             ceEEEcCEEee---------------------------------------------------------eeeeccCcEEEe
Q psy12107        287 ELIKVKGNQVA---------------------------------------------------------PYKKLAGGVKFL  309 (334)
Q Consensus       287 d~i~~~G~~i~---------------------------------------------------------~~~~~~~~i~~v  309 (334)
                      |+||++|++|+                                                         +++.++..|+++
T Consensus       440 d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v  519 (550)
T 3rix_A          440 SLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFV  519 (550)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             heeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEE
Confidence            99999999999                                                         444555449999


Q ss_pred             ecCCCCCCchhhHHHHhhhhcCCC
Q psy12107        310 ETIPRNPAGKVLRNELKVFGTNPK  333 (334)
Q Consensus       310 ~~lP~t~~GKi~r~~l~~~~~~~~  333 (334)
                      ++||+|++|||+|++|++++.+.+
T Consensus       520 ~~lP~t~~GKi~r~~L~~~~~~~~  543 (550)
T 3rix_A          520 DEVPKGLTGKLDARKIREILIKAK  543 (550)
T ss_dssp             ------------------------
T ss_pred             eecCCCCCcceeHHHHHHHHHhhc
Confidence            999999999999999999986643

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=5.8e-53  Score=396.83  Aligned_cols=321  Identities=31%  Similarity=0.569  Sum_probs=255.3

Q ss_pred             CcchhhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhc-CCCCCCCCCCCC-----C-CCEEEEecCCCCCCCch
Q psy12107          3 NIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVT-SQPPDFQLPKIS-----P-NDLAMLPYSSGTTGVPK   75 (334)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~~~-----~-~~~a~i~~TSGTTG~PK   75 (334)
                      .+.+..+.+.++.+.+|..+.+++++... ...+...|++++. ......+.....     + +|+++|+|||||||.||
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PK  208 (548)
T 2d1s_A          130 SSKKGLDKVITVQKTVTTIKTIVILDSKV-DYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPK  208 (548)
T ss_dssp             ECTTTHHHHHHHHHHSTTCCEEEETTCSS-CBTTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCC
T ss_pred             EcHHHHHHHHHHhcCCCCCCEEEEeCCcc-cccccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCC
Confidence            34556667777777777677777765421 1112456777773 211101111222     4 89999999999999999


Q ss_pred             hhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcC
Q psy12107         76 GVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYK  155 (334)
Q Consensus        76 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~  155 (334)
                      ||+++|+++..+..........    ....+++++++.+|++|.+++...++.++ .|+++++.+.++++.+++.|++++
T Consensus       209 gv~~sh~~~~~~~~~~~~~~~~----~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~  283 (548)
T 2d1s_A          209 GVQLTHENIVTRFSHARDPIYG----NQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYK  283 (548)
T ss_dssp             CEEEEHHHHHHHHHHHTCTTTS----CCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTT
T ss_pred             EEEecHHHHHHHHHHhhchhhc----cCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcC
Confidence            9999999998877665543210    12568899999999999999877667777 999999999899999999999999


Q ss_pred             CeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC---
Q psy12107        156 PTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI---  232 (334)
Q Consensus       156 ~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~---  232 (334)
                      +|+++++|+++..|.+.......++++||.+++||+++++++.+++.+.|+  ++.+++.||+||++.+++......   
T Consensus       284 ~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~  361 (548)
T 2d1s_A          284 CTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVARRFN--LPGVRQGYGLTETTSAIIITPEGDDKP  361 (548)
T ss_dssp             EEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHHHHTT--CSCCEEEEECGGGSSEEEECCTTCCCT
T ss_pred             CcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHHHHcC--CCceeeccccccccceeeecCcccCCC
Confidence            999999999999999876655667899999999999999999999999996  457999999999987654322110   


Q ss_pred             --------------------CCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCC
Q psy12107        233 --------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTK  286 (334)
Q Consensus       233 --------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~  286 (334)
                                          .+...+..|++      ++.||+++|+.|.+.|+.+|||+|||+|++++||+++++||.|
T Consensus       362 ~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~  441 (548)
T 2d1s_A          362 GASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLK  441 (548)
T ss_dssp             TCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGG
T ss_pred             CCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEecccc
Confidence                                01122334444      7889999999999999889999999999999999999999999


Q ss_pred             ceEEEcCEEee---------------------------------------------------------eeeecc-CcEEE
Q psy12107        287 ELIKVKGNQVA---------------------------------------------------------PYKKLA-GGVKF  308 (334)
Q Consensus       287 d~i~~~G~~i~---------------------------------------------------------~~~~~~-~~i~~  308 (334)
                      |+||++|++|+                                                         +++.|+ . |++
T Consensus       442 d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~-i~~  520 (548)
T 2d1s_A          442 SLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGG-VRF  520 (548)
T ss_dssp             GCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTC-EEE
T ss_pred             ceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHhcccccccccc-EEE
Confidence            99999999999                                                         566777 5 999


Q ss_pred             eecCCCCCCchhhHHHHhhhhcCC
Q psy12107        309 LETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       309 v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                      +++||+|++|||+|++|++.+.+.
T Consensus       521 v~~lP~t~~GKi~r~~L~~~~~~~  544 (548)
T 2d1s_A          521 VDEVPKGLTGKIDGRAIREILKKP  544 (548)
T ss_dssp             CSSCCBCTTSCBCHHHHHHHHHSC
T ss_pred             ccCCCCCCcchhHHHHHHHHHhhh
Confidence            999999999999999999987653

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=8.9e-53  Score=391.79  Aligned_cols=268  Identities=32%  Similarity=0.456  Sum_probs=231.0

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ...+++|+++|+|||||||.||||+++|+++.++.......+       ...++|++++.+|++|.+++....+.++..|
T Consensus       150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-------~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g  222 (503)
T 4fuq_A          150 IDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-------RFTPDDVLIHALPIYHTHGLFVASNVTLFAR  222 (503)
T ss_dssp             CCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-------TCCTTCEEEECSCSSSHCCCCCCHHHHHHTT
T ss_pred             CCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-------CCCCCCEEEEeCChHHHHHHHHHHHHHHHhC
Confidence            456789999999999999999999999999998876665544       2678999999999999998766567888999


Q ss_pred             cEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCcee
Q psy12107        134 MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR  213 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~  213 (334)
                      +++++.+.++++.+++.++  ++|+++++|+++..|++........++++|.+++||+++++++.+.+.+.++.   +++
T Consensus       223 ~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~---~~~  297 (503)
T 4fuq_A          223 GSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTGH---AVL  297 (503)
T ss_dssp             CEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHSC---CEE
T ss_pred             CEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhCC---Ccc
Confidence            9999999999999999998  89999999999999999877777788999999999999999999999999974   799


Q ss_pred             eccCCCCCCCcccccccCC-----------------------CCccccCcccc------ccccccCCccccccccCCCCc
Q psy12107        214 QGYGMTETSPCTLYTRFAI-----------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGW  264 (334)
Q Consensus       214 ~~YG~tE~g~~~~~~~~~~-----------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~  264 (334)
                      |.||+||++...+......                       .+...|..|++      ++.||+++|+.|.+.|..+||
T Consensus       298 ~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~  377 (503)
T 4fuq_A          298 ERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGF  377 (503)
T ss_dssp             ECCEETTTEECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSC
T ss_pred             ceEcccccCcccccCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCC
Confidence            9999999986544322111                       11223444444      788999999999999988999


Q ss_pred             eecCceEEEecCCcEEEEccCCceEEEcCEEee-----------------------------------------------
Q psy12107        265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-----------------------------------------------  297 (334)
Q Consensus       265 ~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-----------------------------------------------  297 (334)
                      |+|||+|++++||+++++||.||+||++|++|+                                               
T Consensus       378 ~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~  457 (503)
T 4fuq_A          378 FITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQ  457 (503)
T ss_dssp             EEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHH
T ss_pred             eEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHH
Confidence            999999999999999999999999999999999                                               


Q ss_pred             ----------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCCCC
Q psy12107        298 ----------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPKK  334 (334)
Q Consensus       298 ----------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~~  334 (334)
                                ++++|.. |+++++||+|++|||+|++|++.+++..|
T Consensus       458 l~~~l~~~L~~~~~P~~-i~~v~~lP~t~~GKi~R~~L~~~~~~~~k  503 (503)
T 4fuq_A          458 VLHGLDGQLAKFKMPKK-VIFVDDLPRNTMGKVQKNVLRETYKDIYK  503 (503)
T ss_dssp             HHHHHBTTBCGGGCCSE-EEEESCCCBCTTSCBCHHHHHHHTTTTTC
T ss_pred             HHHHHHhhcccCCCCCE-EEEECCCCCCcccceeHHHHHHHHHHhhC
Confidence                      6667777 99999999999999999999999987654

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=7.1e-53  Score=393.72  Aligned_cols=265  Identities=30%  Similarity=0.505  Sum_probs=223.1

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ....++|+++|+|||||||.||||+++|+++.++.......+       ....+|++++.+|++|.+++...++..+ .|
T Consensus       165 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-------~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G  236 (517)
T 3r44_A          165 VECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-------DVRYRDRLLLPLPMFHVAALTTVIFSAM-RG  236 (517)
T ss_dssp             CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-------CCCTTCEEEECSCTTSHHHHHHHHHHHH-HT
T ss_pred             CCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-------CCCCCCEEEEeCchHHHHHHHHHHHHHh-cC
Confidence            456789999999999999999999999999988877655544       2678999999999999999887555555 99


Q ss_pred             cEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCcee
Q psy12107        134 MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR  213 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~  213 (334)
                      +++++.+.+++..+++.|+++++|++.++|+++..|.+.+.....++++||.+++||+++++++.+.+.+.    +++++
T Consensus       237 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~----~~~~~  312 (517)
T 3r44_A          237 VTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK----NIEVV  312 (517)
T ss_dssp             CEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT----TCEEE
T ss_pred             eEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc----CCcEE
Confidence            99999999999999999999999999999999999988765555678899999999999999999999876    34899


Q ss_pred             eccCCCCCCCcccccccCCCCccccC-----------------------cccc------ccccccCCccccccccCCCCc
Q psy12107        214 QGYGMTETSPCTLYTRFAIPEAKLGS-----------------------TGQL------VMLGYLKNEEATKETVDSEGW  264 (334)
Q Consensus       214 ~~YG~tE~g~~~~~~~~~~~~~~~~~-----------------------~G~~------~~~gy~~~~~~~~~~~~~~~~  264 (334)
                      |.||+||++...+...........++                       .|++      ++.||+++|+.|.+.| .+||
T Consensus       313 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~GEl~v~g~~v~~GY~~~p~~t~~~f-~~g~  391 (517)
T 3r44_A          313 QGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAF-DNGW  391 (517)
T ss_dssp             EEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSEEEEEEEEETTSCSEETTCHHHHHHTE-ETTE
T ss_pred             EeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCCCeEEEEeCcchhhhhCCChhhhHhhh-cCCC
Confidence            99999999865543222111011111                       2333      7889999999999999 6899


Q ss_pred             eecCceEEEecCCcEEEEccCCceEEEcCEEee-----------------------------------------------
Q psy12107        265 LHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-----------------------------------------------  297 (334)
Q Consensus       265 ~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-----------------------------------------------  297 (334)
                      |+|||+|++++||+++++||.||+||++|++|+                                               
T Consensus       392 ~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~~~~~~l  471 (517)
T 3r44_A          392 FRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQI  471 (517)
T ss_dssp             EEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTTCCHHHH
T ss_pred             EecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCCCCHHHH
Confidence            999999999999999999999999999999999                                               


Q ss_pred             ---------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        298 ---------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       298 ---------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                               ++++|.. |+++++||+|++|||+|++|++.+.+.
T Consensus       472 ~~~l~~~L~~~~~P~~-i~~v~~lP~t~~GKi~R~~L~~~~~~~  514 (517)
T 3r44_A          472 VEYCGTRLARYKLPKK-VIFAEAIPRNPTGKILKTVLREQYSAT  514 (517)
T ss_dssp             HHHHHHHSCGGGSCSE-EEECSCCCBCTTCCBCHHHHHHHHGGG
T ss_pred             HHHHHHhCCCCCCCCE-EEEECCCCCCCCcCccHHHHHHHHHhh
Confidence                     6667777 999999999999999999999998653

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=4.7e-52  Score=392.73  Aligned_cols=308  Identities=23%  Similarity=0.369  Sum_probs=229.7

Q ss_pred             HHHHHHhhhCCCC-ceEEEEcCCCCCCCCccchhhhhcCCCCCCC-C---CCCCCCCEEEEecCCCCCCCchhhhhcchH
Q psy12107          9 EVGTKIGATLPNF-RGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQ-L---PKISPNDLAMLPYSSGTTGVPKGVKLSHNN   83 (334)
Q Consensus         9 ~~~~~~~~~~~~~-~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~-~---~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~   83 (334)
                      +.+.++...++.+ ..++.++...  ..++..|.+++........ +   ....++|+++|+|||||||.||+|+++|.+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~  249 (580)
T 3etc_A          172 EQVDEAHAECGDIPLKKAKVGGDV--LEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTY  249 (580)
T ss_dssp             HHHHHHHHHHCSCCCEEEEESSSC--CTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTH
T ss_pred             HHHHHHhhhCCCcceEEEEeCCcc--ccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHH
Confidence            6677777777777 6677776432  2356788888732221111 1   246789999999999999999999999998


Q ss_pred             HHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEc--CCCCHHHHHHHHHHcCCeEEee
Q psy12107         84 CAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITI--PKFTPETYIECVVKYKPTILFV  161 (334)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~--~~~~~~~~~~~i~~~~~t~l~~  161 (334)
                      +...........       ...+++++++..|++|..+....++.++..|+++++.  ..+++..+++.|+++++|++++
T Consensus       250 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~  322 (580)
T 3etc_A          250 PLGHILTAKYWQ-------NVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCA  322 (580)
T ss_dssp             HHHHHHHHHTTS-------CCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHHhh-------CCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEc
Confidence            887665543332       2678899999999999888876678889999999887  4689999999999999999999


Q ss_pred             chHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCCC--------
Q psy12107        162 VPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP--------  233 (334)
Q Consensus       162 ~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~--------  233 (334)
                      +|++++.|.+. .....++++||.+++||+++++++.+++.+.++.   ++++.||+||++.+++.......        
T Consensus       323 ~P~~~~~l~~~-~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~---~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~p  398 (580)
T 3etc_A          323 PPTIYRFLIKE-DLSHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGI---KLMEGFGQTETVVTIATFPWMEPKPGSIGKP  398 (580)
T ss_dssp             CHHHHHHHHTS-CC---CCTTCCEEEECSSCCCHHHHHHHHHHHSC---CCEEEECCTTSSCCEECCTTSCCCTTCCBEE
T ss_pred             cHHHHHHHHhc-ccccCCCccceEEEEccCCCCHHHHHHHHHHhCC---eEecccccccccceeecCCCCCCCCCccccC
Confidence            99999999886 3456678999999999999999999999999864   79999999999865543321110        


Q ss_pred             --------------CccccCcccc-----------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCce
Q psy12107        234 --------------EAKLGSTGQL-----------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKEL  288 (334)
Q Consensus       234 --------------~~~~~~~G~~-----------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~  288 (334)
                                    +...|..|++           ++.||+++|+.|.+.| .+|||+|||+|++|+||+++++||.||+
T Consensus       399 ~~~~~v~ivd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f-~~gwy~TGDlg~~d~dG~l~~~GR~dd~  477 (580)
T 3etc_A          399 TPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETW-HDGYYHTGDMAWMDEDGYLWFVGRADDI  477 (580)
T ss_dssp             CTTCEEEEECTTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEESSSC
T ss_pred             CCCCEEEEECCCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhc-CCCEEecCcEEEECCCCcEEEEecCCCE
Confidence                          1122333333           5678999999999999 5899999999999999999999999999


Q ss_pred             EEEcCEEee------------------------------------------------------------eeeeccCcEEE
Q psy12107        289 IKVKGNQVA------------------------------------------------------------PYKKLAGGVKF  308 (334)
Q Consensus       289 i~~~G~~i~------------------------------------------------------------~~~~~~~~i~~  308 (334)
                      ||++|++|+                                                            ++++|+. |++
T Consensus       478 Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~-i~~  556 (580)
T 3etc_A          478 IKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRI-IEF  556 (580)
T ss_dssp             EEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSE-EEE
T ss_pred             EEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeE-EEE
Confidence            999999999                                                            5777887 999


Q ss_pred             eecCCCCCCchhhHHHHhhhhcC
Q psy12107        309 LETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       309 v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                      +++||+|++|||+|++||+++.+
T Consensus       557 v~~lP~t~sGKi~R~~Lr~~~~~  579 (580)
T 3etc_A          557 VPELPKTISGKIRRVEIRDKDQS  579 (580)
T ss_dssp             ECC--------------------
T ss_pred             eCCCCCCCCcCCcHHHHHhHhhc
Confidence            99999999999999999998764

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=1.5e-52  Score=393.48  Aligned_cols=303  Identities=26%  Similarity=0.406  Sum_probs=243.2

Q ss_pred             HHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhh
Q psy12107         10 VGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLE   89 (334)
Q Consensus        10 ~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~   89 (334)
                      .+.++...+|.++.+++.++..       .|.++........+.....++|+++|+|||||||.||||+++|+++.++..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~  212 (539)
T 1mdb_A          140 LARQVQSKLPTLKNIIVAGEAE-------EFLPLEDLHTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLK  212 (539)
T ss_dssp             HHHHHHHHCTTCCCEEEESCCT-------TSEEGGGCCCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHH
T ss_pred             HHHHHHhcCCCccEEEEcCCcc-------chhhhhhccccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHH
Confidence            4445555677777777654321       233333211111122356789999999999999999999999999988776


Q ss_pred             hhccCccccCCCCCCCCCceEEEecchhhhhHHHH-HHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHH
Q psy12107         90 QCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG-ILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLF  168 (334)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~  168 (334)
                      .....+       ...+++++++.+|++|.+++.. .++.++..|+++++.+.++++.+++.|+++++|+++++|+++..
T Consensus       213 ~~~~~~-------~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~  285 (539)
T 1mdb_A          213 RSVEVC-------WLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMV  285 (539)
T ss_dssp             HHHHHH-------TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred             HHHHhh-------CCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHH
Confidence            554433       2568899999999999999875 57889999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccC--------------C--
Q psy12107        169 LASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA--------------I--  232 (334)
Q Consensus       169 l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~--------------~--  232 (334)
                      |++.......++++||.+++||+++++++.+++.+.++.   +++|.||+||++.........              .  
T Consensus       286 l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~---~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~  362 (539)
T 1mdb_A          286 WMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGC---TLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDE  362 (539)
T ss_dssp             HHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCS---EEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCE
T ss_pred             HHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHhCC---cEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCce
Confidence            987654445678899999999999999999999999864   899999999976433221110              0  


Q ss_pred             --------CCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee-
Q psy12107        233 --------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-  297 (334)
Q Consensus       233 --------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-  297 (334)
                              .+...|..|++      ++.||+++|+.|.+.|..+|||+|||+|++++||+++++||.||+||++|++|+ 
T Consensus       363 ~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p  442 (539)
T 1mdb_A          363 SRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAA  442 (539)
T ss_dssp             EEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECH
T ss_pred             EEEECCCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECH
Confidence                    01122344554      789999999999999988999999999999999999999999999999999999 


Q ss_pred             --------------------------------------------------------eeeeccCcEEEeecCCCCCCchhh
Q psy12107        298 --------------------------------------------------------PYKKLAGGVKFLETIPRNPAGKVL  321 (334)
Q Consensus       298 --------------------------------------------------------~~~~~~~~i~~v~~lP~t~~GKi~  321 (334)
                                                                              .+++|.. |+++++||+|++|||+
T Consensus       443 ~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~l~~~~L~~~~~P~~-i~~v~~lP~t~~GKi~  521 (539)
T 1mdb_A          443 EEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDR-VEFVESFPQTGVGKVS  521 (539)
T ss_dssp             HHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHHHHHHHHHHTTCCGGGSCSE-EEECSSCCBCTTSCBC
T ss_pred             HHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCCCCHHHHHHHHHhCCCCcccCCCE-EEEeccCCCCCCcCEe
Confidence                                                                    4556666 9999999999999999


Q ss_pred             HHHHhhhhc
Q psy12107        322 RNELKVFGT  330 (334)
Q Consensus       322 r~~l~~~~~  330 (334)
                      |++|++.+.
T Consensus       522 r~~L~~~~~  530 (539)
T 1mdb_A          522 KKALREAIS  530 (539)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=2e-51  Score=393.44  Aligned_cols=316  Identities=19%  Similarity=0.261  Sum_probs=246.8

Q ss_pred             HHHHHHhhhCC--CCceEEEEcCCCCC----CCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcch
Q psy12107          9 EVGTKIGATLP--NFRGTIVVGGEHDK----SKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHN   82 (334)
Q Consensus         9 ~~~~~~~~~~~--~~~~ii~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~   82 (334)
                      +.+.+++..++  .++.+++++.....    ......|++++.......+....+++|+++|+|||||||.||||+++|+
T Consensus       200 ~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~  279 (652)
T 1pg4_A          200 KNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTG  279 (652)
T ss_dssp             HHHHHHHTSTTCCSCCEEEEECSSCCCCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESH
T ss_pred             HHHHHHHhcCCcCCCCEEEEEeCCCCcccccCCCceeHHHHHhhcCCCCCccccCCCCCEEEEeccCCCCCCceEEECch
Confidence            44555555543  56778877642110    1124567887743222222345678999999999999999999999999


Q ss_pred             HHHHHhhhh-ccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC----CCHHHHHHHHHHcCCe
Q psy12107         83 NCAVNLEQC-VHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK----FTPETYIECVVKYKPT  157 (334)
Q Consensus        83 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~----~~~~~~~~~i~~~~~t  157 (334)
                      ++..+.... ...+       +..++|++++..|++|+.++...++.++..|+++++.+.    +++..+++.|+++++|
T Consensus       280 ~~~~~~~~~~~~~~-------~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt  352 (652)
T 1pg4_A          280 GYLVYAATTFKYVF-------DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVN  352 (652)
T ss_dssp             HHHHHHHHHHHHHT-------TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHhc-------CCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCe
Confidence            987665322 2222       267899999999999999986667899999999999864    5899999999999999


Q ss_pred             EEeechHHHHHHhcCCC--CCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCCCCc
Q psy12107        158 ILFVVPSLLLFLASHPA--VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEA  235 (334)
Q Consensus       158 ~l~~~p~~l~~l~~~~~--~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~  235 (334)
                      +++++|++++.|.+...  ....++++||.+++||+++++++.+++.+.+|..++++++.||+||++.+++.......+.
T Consensus       353 ~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~  432 (652)
T 1pg4_A          353 ILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIEL  432 (652)
T ss_dssp             EEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCB
T ss_pred             EEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCCcCc
Confidence            99999999999988654  3345789999999999999999999999999743468999999999986554332111001


Q ss_pred             c------------------------ccCcccc--------ccccccCCccccccccC--CCCceecCceEEEecCCcEEE
Q psy12107        236 K------------------------LGSTGQL--------VMLGYLKNEEATKETVD--SEGWLHTGDVAYYDEDGYFYI  281 (334)
Q Consensus       236 ~------------------------~~~~G~~--------~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~dg~~~~  281 (334)
                      .                        .+..|++        +++|||++++.+.+.+.  .+|||+|||+|++|+||++++
T Consensus       433 ~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i  512 (652)
T 1pg4_A          433 KAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWI  512 (652)
T ss_dssp             CTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEE
T ss_pred             cCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEE
Confidence            1                        1222332        67889999998877653  378999999999999999999


Q ss_pred             EccCCceEEEcCEEee------------------------------------------------------------eeee
Q psy12107        282 VDRTKELIKVKGNQVA------------------------------------------------------------PYKK  301 (334)
Q Consensus       282 ~GR~~d~i~~~G~~i~------------------------------------------------------------~~~~  301 (334)
                      +||.||+||++|++|+                                                            ++++
T Consensus       513 ~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~  592 (652)
T 1pg4_A          513 TGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLAT  592 (652)
T ss_dssp             EEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGC
T ss_pred             EecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcC
Confidence            9999999999999999                                                            5566


Q ss_pred             ccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        302 LAGGVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       302 ~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                      |.. |+++++||+|++|||+|++|++.+.+.
T Consensus       593 P~~-i~~v~~lP~T~sGKi~R~~L~~~~~~~  622 (652)
T 1pg4_A          593 PDV-LHWTDSLPKTRSGKIMRRILRKIAAGD  622 (652)
T ss_dssp             CSE-EEECSCCCBCTTSCBCHHHHHHHHHTC
T ss_pred             CeE-EEEcCCCCCCCCccchHHHHHHHHhCC
Confidence            776 999999999999999999999987653

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=4.7e-52  Score=390.49  Aligned_cols=308  Identities=19%  Similarity=0.298  Sum_probs=206.8

Q ss_pred             HHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCC-CCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHh
Q psy12107         10 VGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQP-PDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNL   88 (334)
Q Consensus        10 ~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~   88 (334)
                      .+..+....+..+.+++++...    ....+.++..... ...+....+++|+++|+|||||||.||||+++|+++..+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~  220 (544)
T 3o83_A          145 FIDSLHDVNLSPEIILMLNHQA----TDFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSV  220 (544)
T ss_dssp             HHHHHHHTTCCCSEEEEETCCT----TSEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHH
T ss_pred             HHHHHhhcccCcceEEEecCCc----cccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHH
Confidence            3344445556666666665432    2234555542111 1111245678999999999999999999999999999887


Q ss_pred             hhhccCccccCCCCCCCCCceEEEecchhhhhHHHH-HHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHH
Q psy12107         89 EQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG-ILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLL  167 (334)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~  167 (334)
                      ......+       ...++|++++.+|++|.+++.. .++.++..|+++++.+.+++..+++.|+++++|+++++|+++.
T Consensus       221 ~~~~~~~-------~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~  293 (544)
T 3o83_A          221 RASAEIC-------GLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVI  293 (544)
T ss_dssp             HHHHHHT-------TCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHH
T ss_pred             HHHHHHh-------CCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHH
Confidence            7665544       2678999999999999988764 4688899999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccC--------------C-
Q psy12107        168 FLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA--------------I-  232 (334)
Q Consensus       168 ~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~--------------~-  232 (334)
                      .|++.......++++||.+++||+++++++.+++.+.++.   ++++.||+||++.........              . 
T Consensus       294 ~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~---~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~  370 (544)
T 3o83_A          294 MWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVLNC---KLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDD  370 (544)
T ss_dssp             HHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHHCS---EEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTC
T ss_pred             HHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHhCC---cEEeeeccccccceeecCCCchhhccCCCceecCCCc
Confidence            9988776667788999999999999999999999999964   899999999987543321110              0 


Q ss_pred             ---------CCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee
Q psy12107        233 ---------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA  297 (334)
Q Consensus       233 ---------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~  297 (334)
                               .+...|..|++      ++.||+++|+.|.+.|+.+|||+|||+|++++||+++++||.||+||++|++|+
T Consensus       371 ~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~  450 (544)
T 3o83_A          371 EIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIA  450 (544)
T ss_dssp             EEEEECTTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC-----------
T ss_pred             EEEEECCCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEEC
Confidence                     11223444554      788999999999999988999999999999999999999999999999999999


Q ss_pred             ---------------------------------------------------------eeeeccCcEEEeecCCCCCCchh
Q psy12107        298 ---------------------------------------------------------PYKKLAGGVKFLETIPRNPAGKV  320 (334)
Q Consensus       298 ---------------------------------------------------------~~~~~~~~i~~v~~lP~t~~GKi  320 (334)
                                                                               ++++|.. |+++++||+|++|||
T Consensus       451 p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~l~~~~~~~~l~~~~~P~~-i~~v~~lP~t~~GKi  529 (544)
T 3o83_A          451 SEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELGIAQYKLPDQ-IKLIESLPLTAVGKV  529 (544)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCCCHHHHHHHHHhCCCCcccCCcE-EEEeccCCCCCCCCC
Confidence                                                                     4556776 999999999999999


Q ss_pred             hHHHHhhhhcCC
Q psy12107        321 LRNELKVFGTNP  332 (334)
Q Consensus       321 ~r~~l~~~~~~~  332 (334)
                      +|++|++++.+.
T Consensus       530 ~r~~L~~~~~~~  541 (544)
T 3o83_A          530 DKKQLRSILNTS  541 (544)
T ss_dssp             ------------
T ss_pred             cHHHHHHHHhhc
Confidence            999999998654

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=7.8e-52  Score=388.71  Aligned_cols=314  Identities=29%  Similarity=0.456  Sum_probs=235.4

Q ss_pred             CcchhhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcch
Q psy12107          3 NIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHN   82 (334)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~   82 (334)
                      .++++.+.+.++...++.++.++++++..  +.+...|++++......   ...+++++++|+|||||||.||||+++|+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGTTG~PKgV~~sh~  199 (541)
T 1v25_A          125 FDPNLLPLVEAIRGELKTVQHFVVMDEKA--PEGYLAYEEALGEEADP---VRVPERAACGMAYTTGTTGLPKGVVYSHR  199 (541)
T ss_dssp             ECGGGHHHHHHHGGGCSSCCEEEESSSCC--CTTCEEHHHHCCSCCCC---CCCCTTSEEEEEEECSSSSSCEEEEEEHH
T ss_pred             EChhHHHHHHHHHhhCCCccEEEEecCCC--CcccccHHHHhhccCCc---ccCCCCCcEEEEECCCCCCCCcEeeeehH
Confidence            35566777777777788888888776432  11345677776432221   34567899999999999999999999999


Q ss_pred             HHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC-CCHHHHHHHHHHcCCeEEee
Q psy12107         83 NCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK-FTPETYIECVVKYKPTILFV  161 (334)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l~~  161 (334)
                      ++..+.........     ....++|++++.+|++|.+++.. ++.++..|+++++.+. +++..+++.|+++++|++++
T Consensus       200 ~l~~~~~~~~~~~~-----~~~~~~d~~l~~~p~~h~~~~~~-~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~  273 (541)
T 1v25_A          200 ALVLHSLAASLVDG-----TALSEKDVVLPVVPMFHVNAWCL-PYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAG  273 (541)
T ss_dssp             HHHHHHHHTTSTTT-----TCCCTTCEEEECSCTTSHHHHTH-HHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHhhhhhccc-----ccCCCCCEEEEeccchhhhHHHH-HHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEec
Confidence            99876554221110     12568899999999999999865 6778899999998864 79999999999999999999


Q ss_pred             chHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccC----------
Q psy12107        162 VPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA----------  231 (334)
Q Consensus       162 ~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~----------  231 (334)
                      +|+++..|++.......++++||.+++||+++++++.+++ +.++   ++++|.||+||++.+++.....          
T Consensus       274 ~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~~g---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~  349 (541)
T 1v25_A          274 VPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ERMG---VEVRQGYGLTETSPVVVQNFVKSHLESLSEEE  349 (541)
T ss_dssp             CHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HHTT---CEEEEEEECGGGSSEEEECCCCGGGTTSCHHH
T ss_pred             chHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HHhC---CceeecccccccccceecccccccccccCccc
Confidence            9999999987544334567899999999999999999999 6665   4899999999998655432111          


Q ss_pred             --------------------CCC---cc-c-cCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEE
Q psy12107        232 --------------------IPE---AK-L-GSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFY  280 (334)
Q Consensus       232 --------------------~~~---~~-~-~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~  280 (334)
                                          +..   .. . +..|++      ++.||+++|+.|.+.|.++|||+|||+|++|+||+++
T Consensus       350 ~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~  429 (541)
T 1v25_A          350 KLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVE  429 (541)
T ss_dssp             HHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEE
T ss_pred             cccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEE
Confidence                                000   00 0 124554      7889999999999999889999999999999999999


Q ss_pred             EEccCCceEEEcCEEee---------------------------------------------------------eeeecc
Q psy12107        281 IVDRTKELIKVKGNQVA---------------------------------------------------------PYKKLA  303 (334)
Q Consensus       281 ~~GR~~d~i~~~G~~i~---------------------------------------------------------~~~~~~  303 (334)
                      ++||.||+||++|++|+                                                         .+++|.
T Consensus       430 ~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~~~l~~~~~~~~L~~~~~P~  509 (541)
T 1v25_A          430 IKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPD  509 (541)
T ss_dssp             EEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------CCCTTTSCS
T ss_pred             EeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCCCHHHHHHHHHhccCccccCCc
Confidence            99999999999999999                                                         344566


Q ss_pred             CcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        304 GGVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       304 ~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                      . |+++++||+|++|||+|++|++.+.+.
T Consensus       510 ~-i~~v~~lP~t~~GKi~r~~L~~~~~~~  537 (541)
T 1v25_A          510 A-YVFAEEIPRTSAGKFLKRALREQYKNY  537 (541)
T ss_dssp             B-C--------------CCTTHHHHSTTS
T ss_pred             E-EEEeCCCCCCCccCeeHHHHHHHHHHh
Confidence            6 999999999999999999999987653

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=6.3e-52  Score=390.14  Aligned_cols=313  Identities=30%  Similarity=0.500  Sum_probs=217.5

Q ss_pred             cchhhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCC-CCEEEEecCCCCCCCchhhhhcch
Q psy12107          4 IPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISP-NDLAMLPYSSGTTGVPKGVKLSHN   82 (334)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~a~i~~TSGTTG~PK~v~~t~~   82 (334)
                      +.++.+.+.++....+ ++.+++++.      ....+++++.......+.....+ +|+++|+|||||||.||||+++|+
T Consensus       131 ~~~~~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~  203 (549)
T 3g7s_A          131 HSMLYENFKPVLEKTG-VERVFVVGG------EVNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHF  203 (549)
T ss_dssp             EGGGHHHHHHHHTTSC-CCEEEEETC------SSSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHH
T ss_pred             ChHHHHHHHHHHhhCC-CcEEEEeCC------CCcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHH
Confidence            4455666666666555 566666653      34577777732211122223344 899999999999999999999999


Q ss_pred             HHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeec
Q psy12107         83 NCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVV  162 (334)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~  162 (334)
                      ++..+.......+       ...+.+++++.+|++|.+++.. ++.++..|+++++.+.+++..+++.|+++++|+++++
T Consensus       204 ~l~~~~~~~~~~~-------~~~~~d~~~~~~p~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~  275 (549)
T 3g7s_A          204 NLAANALQLAVAT-------GLSHMDTIVGCMPMFHSAEFGL-VNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAV  275 (549)
T ss_dssp             HHHHHHHHHHHHH-------CCCTTCEEECCSCTTSHHHHHH-HTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEEC
T ss_pred             HHHHHHHHHHHHc-------CCCCCCEEEEeCcHHHHHHHHH-HHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeC
Confidence            9998876655443       2678899999999999999887 7888999999999999999999999999999999999


Q ss_pred             hHHHHHHhcCCCCCc--cccccceeeeecCCCCCHHHHHHHHHH----hccCCCceeeccCCCCCCCcccccccCC----
Q psy12107        163 PSLLLFLASHPAVTP--EHLASIREVTCGAAPATKSLIDKFKQK----VQREDITIRQGYGMTETSPCTLYTRFAI----  232 (334)
Q Consensus       163 p~~l~~l~~~~~~~~--~~~~~lr~v~~~G~~l~~~~~~~~~~~----~~~~~~~i~~~YG~tE~g~~~~~~~~~~----  232 (334)
                      |+++..|++......  .++++||.+++||+++++++.+++.+.    ++.++++++|.||+||++.+++......    
T Consensus       276 P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~  355 (549)
T 3g7s_A          276 PPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKS  355 (549)
T ss_dssp             HHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGT
T ss_pred             CHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCccccCcC
Confidence            999999987543222  578899999999999999999999988    6633578999999999987655432111    


Q ss_pred             --------------------CCccccCcccc------ccccccCCccccccccC--CCC--ceecCceEEEecCCcEEEE
Q psy12107        233 --------------------PEAKLGSTGQL------VMLGYLKNEEATKETVD--SEG--WLHTGDVAYYDEDGYFYIV  282 (334)
Q Consensus       233 --------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~--~~~--~~~TGD~~~~~~dg~~~~~  282 (334)
                                          .+...|..|++      ++.||+++|+.|.+.|.  .+|  ||+|||+|++|+||+++++
T Consensus       356 ~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~  435 (549)
T 3g7s_A          356 TTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQ  435 (549)
T ss_dssp             TSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEE
T ss_pred             CCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEe
Confidence                                01122344544      78999999999999883  567  9999999999999999999


Q ss_pred             ccCCceEEEcCEEee-----------------------------------------------------------eeeecc
Q psy12107        283 DRTKELIKVKGNQVA-----------------------------------------------------------PYKKLA  303 (334)
Q Consensus       283 GR~~d~i~~~G~~i~-----------------------------------------------------------~~~~~~  303 (334)
                      ||.||+||++|++|+                                                           ++++|+
T Consensus       436 GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~  515 (549)
T 3g7s_A          436 DRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVR  515 (549)
T ss_dssp             EEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----C
T ss_pred             ccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccce
Confidence            999999999999999                                                           666777


Q ss_pred             CcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        304 GGVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       304 ~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                      . |+++++||+|++|||+|++|++...+.
T Consensus       516 ~-i~~v~~lP~t~~GKi~R~~L~~~~~~~  543 (549)
T 3g7s_A          516 E-VEFVEELPRTASGKLLRRLLREKEAEG  543 (549)
T ss_dssp             C-CCEEEECC-------------------
T ss_pred             E-EEEeccCCCCCCcCEeHHHHHHHhhcc
Confidence            7 999999999999999999999987653

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=1.3e-50  Score=382.24  Aligned_cols=312  Identities=18%  Similarity=0.301  Sum_probs=248.1

Q ss_pred             CcchhhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcch
Q psy12107          3 NIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHN   82 (334)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~   82 (334)
                      .+.++.+.+.++...+|.++.++++++..  ..+...|++++.......+.....++|+++|+|||||||.||||+++|+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~  229 (570)
T 3c5e_A          152 AGDEVIQEVDTVASECPSLRIKLLVSEKS--CDGWLNFKKLLNEASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYS  229 (570)
T ss_dssp             EETTTHHHHHHHGGGCTTCCEEEEESSSC--CTTSEEHHHHHHHSCSCCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH
T ss_pred             echHHHHHHHHHhhcCCceeEEEEecccC--ccccccHHHHhhcccccccccCCCCCCcEEEEECCCCCCCCCEEEechH
Confidence            34556677777777888888888876422  1245678887732222222235678999999999999999999999999


Q ss_pred             HHHH--HhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcC--CCCHHHHHHHHHHcCCeE
Q psy12107         83 NCAV--NLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP--KFTPETYIECVVKYKPTI  158 (334)
Q Consensus        83 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~--~~~~~~~~~~i~~~~~t~  158 (334)
                       ++.  ..... ..+       ...++|++++..|++|.+++...++.++..|+++++.+  .+++..+++.|+++++|+
T Consensus       230 -~~~~~~~~~~-~~~-------~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~  300 (570)
T 3c5e_A          230 -SLGLKAKMDA-GWT-------GLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKS  300 (570)
T ss_dssp             -HHHHHHHHHT-TTT-------SCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCE
T ss_pred             -HHHhhhhhhh-hhc-------CCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeE
Confidence             444  22222 222       26788999999999999998766788899999999876  689999999999999999


Q ss_pred             EeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC------
Q psy12107        159 LFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI------  232 (334)
Q Consensus       159 l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~------  232 (334)
                      ++++|+++..|.+.. ....++++||.+++||+++++++.+++.+.++.   +++|.||+||++.+++......      
T Consensus       301 ~~~~P~~~~~l~~~~-~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~---~i~~~YG~TE~~~~~~~~~~~~~~~~~v  376 (570)
T 3c5e_A          301 MMGAPIVYRMLLQQD-LSSYKFPHLQNCVTVGESLLPETLENWRAQTGL---DIRESYGQTETGLTCMVSKTMKIKPGYM  376 (570)
T ss_dssp             EEECHHHHHHHHTSC-TTTCCCTTCCEEEEESSCCCHHHHHHHHHHHSC---CCEEEEEETTTEEEEECCTTSCCCTTCC
T ss_pred             EeccHHHHHHHHhcc-ccccccccceEEEEcCCcCCHHHHHHHHHHhCC---chhhccchhhcccceecCcccccCCCcc
Confidence            999999999998763 344568899999999999999999999999864   7999999999986544322110      


Q ss_pred             ----------------CCccccCccc-----------cccccccCCccccccccCCCCceecCceEEEecCCcEEEEccC
Q psy12107        233 ----------------PEAKLGSTGQ-----------LVMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRT  285 (334)
Q Consensus       233 ----------------~~~~~~~~G~-----------~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~  285 (334)
                                      .+...|..|+           .++.||+++|+.|.+.| .++||+|||+|++|+||+++++||.
T Consensus       377 G~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f-~~~~~~TGDlg~~d~dG~l~~~GR~  455 (570)
T 3c5e_A          377 GTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANI-RGDFWLLGDRGIKDEDGYFQFMGRA  455 (570)
T ss_dssp             CEECTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTE-ETTEEEEEEEEEECTTSCEEEEEEG
T ss_pred             cccCCCceEEEECCCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhh-cCCccccceeEEEcCCceEEEEecC
Confidence                            0112233333           35679999999999999 5899999999999999999999999


Q ss_pred             CceEEEcCEEee--------------------------------------------------------------eeeecc
Q psy12107        286 KELIKVKGNQVA--------------------------------------------------------------PYKKLA  303 (334)
Q Consensus       286 ~d~i~~~G~~i~--------------------------------------------------------------~~~~~~  303 (334)
                      ||+||++|++|+                                                              ++++|+
T Consensus       456 dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~  535 (570)
T 3c5e_A          456 DDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPR  535 (570)
T ss_dssp             GGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCS
T ss_pred             CCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCc
Confidence            999999999999                                                              445566


Q ss_pred             CcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        304 GGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       304 ~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                      . |+++++||+|++|||+|++|++.+.+
T Consensus       536 ~-i~~v~~lP~t~~GKi~R~~L~~~~~~  562 (570)
T 3c5e_A          536 K-IEFVLNLPKTVTGKIQRAKLRDKEWK  562 (570)
T ss_dssp             E-EEEESCCCBCTTCCBCHHHHHHHHTC
T ss_pred             E-EEEeccCCCCCCcCCcHHHHHHHHHh
Confidence            6 99999999999999999999998743

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=2.2e-50  Score=386.56  Aligned_cols=317  Identities=19%  Similarity=0.297  Sum_probs=246.4

Q ss_pred             hHHHHHHhhhCCCCceEEEEcCCCC--C---CCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcch
Q psy12107          8 LEVGTKIGATLPNFRGTIVVGGEHD--K---SKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHN   82 (334)
Q Consensus         8 ~~~~~~~~~~~~~~~~ii~~~~~~~--~---~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~   82 (334)
                      .+.+.++++.+|.++++++++....  .   ......|++++.......+...++++|+++|+|||||||.||||+++|+
T Consensus       206 ~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~  285 (663)
T 1ry2_A          206 KRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTA  285 (663)
T ss_dssp             HHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSH
T ss_pred             HHHHHHHHHhCCCCceEEEEecCCCCccccCCCccccHHHHHhhcCCCCCccccCCCCceEEEeccCCCCCCceEEEchh
Confidence            4556677777788888888864321  0   1234567777743222222345678999999999999999999999999


Q ss_pred             HHHHHhhhhc-cCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC----CCHHHHHHHHHHcCCe
Q psy12107         83 NCAVNLEQCV-HPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK----FTPETYIECVVKYKPT  157 (334)
Q Consensus        83 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~----~~~~~~~~~i~~~~~t  157 (334)
                      ++..+..... ..+       +..++|++++..|++|+.+....++.++..|+++++.+.    +++..+++.|+++++|
T Consensus       286 ~~~~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt  358 (663)
T 1ry2_A          286 GYLLGALLTMRYTF-------DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVT  358 (663)
T ss_dssp             HHHHHHHHHHHHHS-------CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHhc-------CCCCCcEEEEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCC
Confidence            9876553322 112       267889999999999999986667899999999998864    5899999999999999


Q ss_pred             EEeechHHHHHHhcCCC--CCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCccccccc-CC--
Q psy12107        158 ILFVVPSLLLFLASHPA--VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF-AI--  232 (334)
Q Consensus       158 ~l~~~p~~l~~l~~~~~--~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~-~~--  232 (334)
                      +++++|++++.|.+...  ....++++||.+++||+++++++++++.+.+|..++++++.||+||++.+++.... ..  
T Consensus       359 ~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~  438 (663)
T 1ry2_A          359 QFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTP  438 (663)
T ss_dssp             EEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCC
T ss_pred             EEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCCCcc
Confidence            99999999999987654  23567899999999999999999999999997334689999999999865443221 00  


Q ss_pred             -------------------C-C---ccc-cCcccc--------ccccccCCccccccccCC--CCceecCceEEEecCCc
Q psy12107        233 -------------------P-E---AKL-GSTGQL--------VMLGYLKNEEATKETVDS--EGWLHTGDVAYYDEDGY  278 (334)
Q Consensus       233 -------------------~-~---~~~-~~~G~~--------~~~gy~~~~~~~~~~~~~--~~~~~TGD~~~~~~dg~  278 (334)
                                         . .   ... +..|++        ++.|||++++.+.+.+..  +|||+|||+|++|+||+
T Consensus       439 ~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~  518 (663)
T 1ry2_A          439 MKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGY  518 (663)
T ss_dssp             CCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCC
T ss_pred             cCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCC
Confidence                               0 0   001 233432        678999999988887643  78999999999999999


Q ss_pred             EEEEccCCceEEEcCEEee-----------------------------------------e---e---------------
Q psy12107        279 FYIVDRTKELIKVKGNQVA-----------------------------------------P---Y---------------  299 (334)
Q Consensus       279 ~~~~GR~~d~i~~~G~~i~-----------------------------------------~---~---------------  299 (334)
                      ++++||.||+||++|++|+                                         .   .               
T Consensus       519 l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~  598 (663)
T 1ry2_A          519 IWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFT  598 (663)
T ss_dssp             EEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHH
T ss_pred             EEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHH
Confidence            9999999999999999999                                         1   1               


Q ss_pred             --------eeccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        300 --------KKLAGGVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       300 --------~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                              ++|.. |+++++||+|++|||+|++|++++.+.
T Consensus       599 l~~~L~~~~~P~~-i~~v~~lP~T~sGKi~R~~L~~~~~~~  638 (663)
T 1ry2_A          599 VRKDIGPFAAPKL-IILVDDLPKTRSGKIMRRILRKILAGE  638 (663)
T ss_dssp             HHHHTCTTTSCSE-EEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred             HHHhCCCCcCCeE-EEEcCCCCCCCccCchHHHHHHHHcCC
Confidence                    12333 999999999999999999999987653

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=3.9e-50  Score=376.49  Aligned_cols=313  Identities=23%  Similarity=0.333  Sum_probs=229.9

Q ss_pred             cchhhHHHHHHhhhCCCC-ceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcch
Q psy12107          4 IPQLLEVGTKIGATLPNF-RGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHN   82 (334)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~   82 (334)
                      +.++.+.+.++...++.+ +.+++++...........|++++.......+....+++|+++|+|||||||.||||+++|+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~  206 (529)
T 2v7b_A          127 SGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHA  206 (529)
T ss_dssp             EGGGHHHHHHHHHCC---CCEEEEECC------CCCBHHHHHHTSCCCSSCCCCCTTSEEEEEEC-----CCCEEEEEHH
T ss_pred             chhhhhHHHHHHhhccccCceEEEecccccccccccchhhhhccCCCcccccCCCCCCeEEEEECCCCCCCCceEEEEhh
Confidence            344555666665555555 5666655322111113467777642222222245678999999999999999999999999


Q ss_pred             HH-HHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEc-CCCCHHHHHHHHHHcCCeEEe
Q psy12107         83 NC-AVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITI-PKFTPETYIECVVKYKPTILF  160 (334)
Q Consensus        83 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~i~~~~~t~l~  160 (334)
                      ++ ..........+       ...++|++++.+|++|.+++...++.++..|+++++. +.++++.+++.|+++++|+++
T Consensus       207 ~l~~~~~~~~~~~~-------~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~  279 (529)
T 2v7b_A          207 NLYWTAELYAKPIL-------GIAENDVVFSAAKLFFAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFY  279 (529)
T ss_dssp             HHHHHHHHTCCCCC-------CCCTTCEEEESSCTTSHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEE
T ss_pred             HHHHHHHHHhhhcc-------CCCCCcEEEEeecHHHHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEE
Confidence            98 44444332222       2678899999999999999877677889999999987 568999999999999999999


Q ss_pred             echHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC--------
Q psy12107        161 VVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI--------  232 (334)
Q Consensus       161 ~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~--------  232 (334)
                      ++|+++..|++..........+||.+++||+++++++.+++.+.++.   ++++.||+||++.+........        
T Consensus       280 ~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~---~i~~~YG~TE~~~~~~~~~~~~~~~~~~G~  356 (529)
T 2v7b_A          280 GVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHFGC---EILDGIGSTEMLHIFLSNRAGAVEYGTTGR  356 (529)
T ss_dssp             ECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHHSC---CEEEEEECTTTSSEEEECCTTCCCTTSCCE
T ss_pred             ecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHhCC---ceeeeEchhhcCceeeccccCCCccCCccc
Confidence            99999999988765443323489999999999999999999999964   7999999999965443221110        


Q ss_pred             --------------CCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEc
Q psy12107        233 --------------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK  292 (334)
Q Consensus       233 --------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~  292 (334)
                                    .+...|..|++      ++.||+++++.+...| .++||+|||+|++++||+++++||.||+||++
T Consensus       357 p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~  435 (529)
T 2v7b_A          357 PVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATF-LGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVS  435 (529)
T ss_dssp             ECTTCEEEEECTTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHE-ETTEEEEEEEEEECTTSCEEEEEEGGGCBC--
T ss_pred             CCCCCEEEEECCCCCCCCCCCccEEEEecCCcccccCCChHHHHHhh-hcCCcccCceEEECCCccEEEeCccCCeEEEC
Confidence                          01122344544      6789999999999999 48999999999999999999999999999999


Q ss_pred             CEEee-----------------------------------------------------------eeeeccCcEEEeecCC
Q psy12107        293 GNQVA-----------------------------------------------------------PYKKLAGGVKFLETIP  313 (334)
Q Consensus       293 G~~i~-----------------------------------------------------------~~~~~~~~i~~v~~lP  313 (334)
                      |++|+                                                           ++++|.. |+++++||
T Consensus       436 G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~-i~~v~~lP  514 (529)
T 2v7b_A          436 GQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRD-IVFVDDLP  514 (529)
T ss_dssp             --CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSE-EEEESCCC
T ss_pred             CEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeE-EEEeccCC
Confidence            99999                                                           3445666 99999999


Q ss_pred             CCCCchhhHHHHhhh
Q psy12107        314 RNPAGKVLRNELKVF  328 (334)
Q Consensus       314 ~t~~GKi~r~~l~~~  328 (334)
                      +|++|||+|++|+++
T Consensus       515 ~t~~GKi~r~~L~~~  529 (529)
T 2v7b_A          515 KTATGKIQRFKLREQ  529 (529)
T ss_dssp             BCTTSCBCHHHHHC-
T ss_pred             CCCccchhHHhHhhC
Confidence            999999999999873

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=2.7e-50  Score=383.82  Aligned_cols=304  Identities=20%  Similarity=0.298  Sum_probs=242.8

Q ss_pred             HHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhh
Q psy12107         11 GTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQ   90 (334)
Q Consensus        11 ~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~   90 (334)
                      +..+....+..+.+.+.+..     ....+.+...............++|+++|+|||||||.||||+++|+++.++...
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~  215 (617)
T 3rg2_A          141 LNTFVTEHSSIRVVQLLNDS-----GEHNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRR  215 (617)
T ss_dssp             HHHHHHHSTTCCEEEEETCC-----STTBHHHHHHSCCSSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHH
T ss_pred             HHHHhhcCCccceeeecccc-----cccchhhhhcccccccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHH
Confidence            33444455666666655432     2234555553222222234567899999999999999999999999999888776


Q ss_pred             hccCccccCCCCCCCCCceEEEecchhhhhHHHH-HHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHH
Q psy12107         91 CVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNG-ILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFL  169 (334)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~-~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l  169 (334)
                      ....+       ...+++++++.+|++|.+++.. .++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|
T Consensus       216 ~~~~~-------~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l  288 (617)
T 3rg2_A          216 SVEIC-------QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLW  288 (617)
T ss_dssp             HHHHH-------TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHH
T ss_pred             HHHhc-------CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHH
Confidence            65543       2678899999999999888764 478889999999999889999999999999999999999999998


Q ss_pred             hcCCCC--CccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccC----------------
Q psy12107        170 ASHPAV--TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA----------------  231 (334)
Q Consensus       170 ~~~~~~--~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~----------------  231 (334)
                      .+....  ....+++||.+++||+++++++.+++.+.+++   +++|.||+||++...+.....                
T Consensus       289 ~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~---~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~  365 (617)
T 3rg2_A          289 LQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGC---QLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDD  365 (617)
T ss_dssp             HHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHTCS---EEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTC
T ss_pred             HHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHhCC---cEEEEeccCcceeecccCCCcccccccCCCccCCCCc
Confidence            764322  23478899999999999999999999999864   899999999987543321110                


Q ss_pred             --------CCCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee
Q psy12107        232 --------IPEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA  297 (334)
Q Consensus       232 --------~~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~  297 (334)
                              ..+...|..|++      +++||+++|+.|.+.|..++||+|||+|++++||+++++||.||+||++|++|+
T Consensus       366 ~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~  445 (617)
T 3rg2_A          366 EVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIA  445 (617)
T ss_dssp             EEEEECTTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEE
T ss_pred             eEEEECCCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeC
Confidence                    012233445554      789999999999999999999999999999999999999999999999999999


Q ss_pred             --------------------------------------------------------eeeeccCcEEEeecCCCCCCchhh
Q psy12107        298 --------------------------------------------------------PYKKLAGGVKFLETIPRNPAGKVL  321 (334)
Q Consensus       298 --------------------------------------------------------~~~~~~~~i~~v~~lP~t~~GKi~  321 (334)
                                                                              .+++|.. +.++++||+|++||||
T Consensus       446 ~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~l~~~l~~~~lp~~~vP~~-~~~v~~lP~t~~GKid  524 (617)
T 3rg2_A          446 AEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIAEFKLPDR-VECVDSLPLTAVGKVD  524 (617)
T ss_dssp             HHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHTTTCCGGGSCSE-EEECSCCCBCTTSSBC
T ss_pred             HHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCCCHHHHHHHHHhCCCccccCCcE-EEEecccCCCCCCCCc
Confidence                                                                    4556666 9999999999999999


Q ss_pred             HHHHhhhhc
Q psy12107        322 RNELKVFGT  330 (334)
Q Consensus       322 r~~l~~~~~  330 (334)
                      |++|++.+.
T Consensus       525 R~~L~~~~~  533 (617)
T 3rg2_A          525 KKQLRQWLA  533 (617)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998753

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=2.5e-50  Score=402.39  Aligned_cols=291  Identities=40%  Similarity=0.629  Sum_probs=202.1

Q ss_pred             CccchhhhhcCCCC---CCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEE
Q psy12107         36 NIFGFKQLVTSQPP---DFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLS  112 (334)
Q Consensus        36 ~~~~~~~ll~~~~~---~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  112 (334)
                      +...|.++......   ..+....+++|+++|+|||||||.||||+++|+++..+...........   ....+++++++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~---~~~~~~d~~l~  275 (979)
T 3tsy_A          199 GCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPN---LYFHSDDVILC  275 (979)
T ss_dssp             TEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCS---SCCCSSCEEEE
T ss_pred             ccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhccc---ccCCCCCEEEE
Confidence            45667776632111   1223456789999999999999999999999999988776544321110   12568899999


Q ss_pred             ecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCC
Q psy12107        113 VLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAP  192 (334)
Q Consensus       113 ~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~  192 (334)
                      .+|++|.+++...++.++..|+++++.+.+++..+++.|+++++|++.++|+++..|++.......++++||.+++||++
T Consensus       276 ~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~  355 (979)
T 3tsy_A          276 VLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAP  355 (979)
T ss_dssp             CSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCC
T ss_pred             ECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCC
Confidence            99999999997778889999999999999999999999999999999999999999998876666788999999999999


Q ss_pred             CCHHHHHHHHHHhccCCCceeeccCCCCCCCccccccc---C-------------------------CCCccccCcccc-
Q psy12107        193 ATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF---A-------------------------IPEAKLGSTGQL-  243 (334)
Q Consensus       193 l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~---~-------------------------~~~~~~~~~G~~-  243 (334)
                      +++++.+++.+.|+  +++++|.||+||++.+++....   .                         ..+...+..|++ 
T Consensus       356 l~~~~~~~~~~~~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~  433 (979)
T 3tsy_A          356 LGKELEDAVNAKFP--NAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEIC  433 (979)
T ss_dssp             CCSSHHHHHHHHCT--TCEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEE
T ss_pred             CCHHHHHHHHHHCC--CCeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEE
Confidence            99999999999996  5689999999999865443210   0                         011122334444 


Q ss_pred             -----ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee---------------------
Q psy12107        244 -----VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA---------------------  297 (334)
Q Consensus       244 -----~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~---------------------  297 (334)
                           ++.||+++|+.|.+.|+.+|||+|||+|++++||+++++||.||+||++|++|+                     
T Consensus       434 i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~  513 (979)
T 3tsy_A          434 IRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVA  513 (979)
T ss_dssp             EESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-------------------------------
T ss_pred             EECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEE
Confidence                 788999999999999989999999999999999999999999999999999999                     


Q ss_pred             ------------------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        298 ------------------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       298 ------------------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                                                          .+++|.. ++++++||+|++|||+|++|++.+.+.
T Consensus       514 ~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~-i~~v~~lP~t~~GKi~r~~L~~~~~~~  583 (979)
T 3tsy_A          514 MKEEAAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINK-VFFTESIPKAPSGKILRKDLRAKLANG  583 (979)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             ecccCCCcEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeE-EEEeCCcCcCCCCCeeHHHHHHHHHhh
Confidence                                                5666777 999999999999999999999987653

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=6.3e-50  Score=372.86  Aligned_cols=267  Identities=26%  Similarity=0.425  Sum_probs=220.1

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ....++|+++|+|||||||.||||+++|+++.++.......+..     .....+++++.+|++|.+++...++.++..|
T Consensus       148 ~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G  222 (504)
T 1t5h_X          148 PQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGL-----RHGRHNVVLGLMPLYHVVGFFAVLVAALALD  222 (504)
T ss_dssp             CCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCC-----CSSTTCEEEECSCTTSHHHHTTTHHHHHHTT
T ss_pred             CCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCC-----CCCCCceEEeecchhhcchHHHHHHHHHHcC
Confidence            34568999999999999999999999999998877665443310     0267899999999999999865578899999


Q ss_pred             cEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCC--CCccccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107        134 MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPA--VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT  211 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~  211 (334)
                      +++++.+.+++..+++.|+++++|+++++|+++..|.+...  ....++++||.+++||+++++++.+++++.++.   .
T Consensus       223 ~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~---~  299 (504)
T 1t5h_X          223 GTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG---E  299 (504)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHCCS---E
T ss_pred             ceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhcCc---c
Confidence            99999999999999999999999999999999999987542  234578899999999999999999999999874   7


Q ss_pred             eeeccCCCCCCCcccccccC-------------------C---CCccccCcccc-------ccccccCCccccccccCCC
Q psy12107        212 IRQGYGMTETSPCTLYTRFA-------------------I---PEAKLGSTGQL-------VMLGYLKNEEATKETVDSE  262 (334)
Q Consensus       212 i~~~YG~tE~g~~~~~~~~~-------------------~---~~~~~~~~G~~-------~~~gy~~~~~~~~~~~~~~  262 (334)
                      ++|.||+||++.........                   .   .....|..|++       ++.||+++|+.|.+.| .+
T Consensus       300 ~~~~YG~TE~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f-~~  378 (504)
T 1t5h_X          300 KVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QD  378 (504)
T ss_dssp             EEEEEEETTTEEEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ET
T ss_pred             eeeeeccccccccccccCCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhh-cC
Confidence            99999999984222111000                   0   11122334443       5679999999999999 68


Q ss_pred             CceecCceEEEecCCcEEEEccCCceEEEcCEEee---------------------------------------------
Q psy12107        263 GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA---------------------------------------------  297 (334)
Q Consensus       263 ~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~---------------------------------------------  297 (334)
                      |||+|||+|++++||+++++||.||+||++|++|+                                             
T Consensus       379 g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~  458 (504)
T 1t5h_X          379 GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA  458 (504)
T ss_dssp             TEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCH
T ss_pred             CccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCH
Confidence            99999999999999999999999999999999999                                             


Q ss_pred             -------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhc
Q psy12107        298 -------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGT  330 (334)
Q Consensus       298 -------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~  330 (334)
                                   +|++|+. |+++++||+|++|||+|++|++.++
T Consensus       459 ~~l~~~~~~~~L~~~~~P~~-i~~v~~lP~t~~GKi~r~~L~~~~~  503 (504)
T 1t5h_X          459 DALDTFCRSSELADFKRPKR-YFILDQLPKNALNKVLRRQLVQQVS  503 (504)
T ss_dssp             HHHHHHHHTSSCCGGGSCSE-EEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred             HHHHHHHhhccCcccccceE-EEEhhhCCCCCCCCEeHHHHHHHhc
Confidence                         4556666 9999999999999999999999875

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=1.3e-49  Score=371.47  Aligned_cols=268  Identities=22%  Similarity=0.293  Sum_probs=225.4

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ....++|+++|+|||||||.||||+++|+++.+........+       ...++|++++.+|++|..++.. ++.++..|
T Consensus       139 ~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-------~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G  210 (512)
T 3fce_A          139 HAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-------NLQTGQVFLNQAPFSFDLSVMD-IYPSLVTG  210 (512)
T ss_dssp             GSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-------TCCSSCEEEECSCTTSGGGHHH-HHHHHHTT
T ss_pred             ccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-------CCCCCCEEEEeCCccHhHHHHH-HHHHHhCC
Confidence            456789999999999999999999999999998876655543       2678899999999999999876 78899999


Q ss_pred             cEEEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107        134 MHMITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI  210 (334)
Q Consensus       134 ~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~  210 (334)
                      +++++.+.   +++..+++.|+++++|++.++|+++..++........++++||.+++||+++++++.+++.+.|+  ++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~--~~  288 (512)
T 3fce_A          211 GTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFP--KA  288 (512)
T ss_dssp             CEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCT--TC
T ss_pred             CEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCC--CC
Confidence            99999876   68999999999999999999999999999887777778999999999999999999999999996  56


Q ss_pred             ceeeccCCCCCCCcccccccC---------------------------CCCccccCcccc------ccccccCCcccccc
Q psy12107        211 TIRQGYGMTETSPCTLYTRFA---------------------------IPEAKLGSTGQL------VMLGYLKNEEATKE  257 (334)
Q Consensus       211 ~i~~~YG~tE~g~~~~~~~~~---------------------------~~~~~~~~~G~~------~~~gy~~~~~~~~~  257 (334)
                      ++++.||+||++.+++.....                           ......+..|++      ++.||+++|+.|.+
T Consensus       289 ~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~  368 (512)
T 3fce_A          289 TIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEK  368 (512)
T ss_dssp             EEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHH
T ss_pred             EEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEeccccChhhcCCchhhhh
Confidence            899999999998755422110                           011123444554      78899999999998


Q ss_pred             cc---CCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee-------------------------------------
Q psy12107        258 TV---DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-------------------------------------  297 (334)
Q Consensus       258 ~~---~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-------------------------------------  297 (334)
                      .|   +.++||+|||+|++ +||+++++||.||+||++|++|+                                     
T Consensus       369 ~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~  447 (512)
T 3fce_A          369 AFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVP  447 (512)
T ss_dssp             HEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEec
Confidence            87   45679999999999 89999999999999999999999                                     


Q ss_pred             ------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCCC
Q psy12107        298 ------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPK  333 (334)
Q Consensus       298 ------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~  333 (334)
                                              +++.|.. ++++++||+|++|||+|++|++.+.+..
T Consensus       448 ~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~-~~~~~~lP~t~~GKi~R~~L~~~~~~~~  506 (512)
T 3fce_A          448 GEHSFEKEFKLTSAIKKELNERLPNYMIPRK-FMYQSSIPMTPNGKVDRKKLLSEVTALE  506 (512)
T ss_dssp             CSCCCSSHHHHHHHHHHHHHTTSCGGGSCSE-EEECSCCCBCTTSSBCHHHHHHHHHC--
T ss_pred             CCccccchhhhHHHHHHHHHhhCchhcCCeE-EEEecccCCCCCcChHHHHHHhhhhhcc
Confidence                                    5556666 9999999999999999999999987654

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=6.3e-50  Score=373.37  Aligned_cols=306  Identities=25%  Similarity=0.424  Sum_probs=198.8

Q ss_pred             cchhhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhc-CCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcch
Q psy12107          4 IPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVT-SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHN   82 (334)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~   82 (334)
                      +.+..+.+......++.++.++.+++..      ..+.++.. ......+.....++|+++|+|||||||.||||+++|+
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~  183 (509)
T 3ivr_A          110 GTDYRDIVAGVLPSLGGVKKAYAIGDGS------GPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQG  183 (509)
T ss_dssp             CSTTHHHHHHHGGGCSSCCEEEESSCCC------SSCEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHH
T ss_pred             CcchhhhHHhhhcccCCceEEEEcCCCC------cChhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehH
Confidence            4455555555666777777777776422      23333332 2222222346778999999999999999999999999


Q ss_pred             HHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcCCeEEeec
Q psy12107         83 NCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVV  162 (334)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~  162 (334)
                      ++..........+       ...++|++++.+|++|.+++...+...+..|+++ +...+++..+++.|+++++|+++++
T Consensus       184 ~l~~~~~~~~~~~-------~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~-~~~~~~~~~~~~~i~~~~~t~~~~~  255 (509)
T 3ivr_A          184 NLLIAQSSLVDAW-------RLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASV-IAAKFDPAQAARDIEAHKVTVMAEF  255 (509)
T ss_dssp             HHHHHHHHHHHHT-------TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEE-ECSSCCHHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHHHHHhh-------CCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEE-EecccCHHHHHHHHHHHCCcEEEec
Confidence            9988877665544       2678999999999999999887544445555544 4458899999999999999999999


Q ss_pred             hHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC----------
Q psy12107        163 PSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI----------  232 (334)
Q Consensus       163 p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~----------  232 (334)
                      |+++..|++..  ....++++|.++.+|++   ++.+.+.+.++  +++++|.||+||++.+.+......          
T Consensus       256 p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~G~p~~  328 (509)
T 3ivr_A          256 APMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCP--NATFWATFGQSETSGLSTFAPYRDRPKSAGRPLF  328 (509)
T ss_dssp             TTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCT--TCEEEEEEEEGGGTEEEEEEEGGGSTTSCCEECT
T ss_pred             HHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcC--CCeEEcccCccccccccccCccccCCCcccccCC
Confidence            99999998866  45678899999999987   88899999985  569999999999987554332111          


Q ss_pred             -----------CCccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccC--CceEEEcC
Q psy12107        233 -----------PEAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRT--KELIKVKG  293 (334)
Q Consensus       233 -----------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~--~d~i~~~G  293 (334)
                                 .+...|..|++      ++.||+++|+.|.+.| .+|||+|||+|++++||+++++||.  +|+||++|
T Consensus       329 ~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f-~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G  407 (509)
T 3ivr_A          329 WRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAF-RNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGG  407 (509)
T ss_dssp             TCEEEEECTTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHT-GGGSEEEEEEEEECTTSCEEEEEEC----------
T ss_pred             CcEEEEECCCCCCCCCCCceEEEEecCCccccccCCHHHhHHHh-hcCCcccccEEEECCCceEEEeCCCCcceeEEECC
Confidence                       11223444554      7889999999999999 5899999999999999999999999  99999999


Q ss_pred             EEee---------------------------------------------------------eeeeccCcEEEeecCCCCC
Q psy12107        294 NQVA---------------------------------------------------------PYKKLAGGVKFLETIPRNP  316 (334)
Q Consensus       294 ~~i~---------------------------------------------------------~~~~~~~~i~~v~~lP~t~  316 (334)
                      ++|+                                                         ++++|.. |+++++||+|+
T Consensus       408 ~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~-i~~v~~lP~t~  486 (509)
T 3ivr_A          408 ENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKH-VVFVEALPKDA  486 (509)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhhCcccCCCcE-EEEecCCCCCC
Confidence            9999                                                         5667777 99999999999


Q ss_pred             CchhhHHHHhhhhcCC
Q psy12107        317 AGKVLRNELKVFGTNP  332 (334)
Q Consensus       317 ~GKi~r~~l~~~~~~~  332 (334)
                      +|||+|++||+.+.+.
T Consensus       487 ~GKidr~~Lr~~~~~~  502 (509)
T 3ivr_A          487 KGAIDRAAVKTAHGQE  502 (509)
T ss_dssp             ----------------
T ss_pred             CCCccHHHHHHHHhhc
Confidence            9999999999998664

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=1.2e-49  Score=370.87  Aligned_cols=263  Identities=28%  Similarity=0.416  Sum_probs=211.8

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ...+++|+++|+|||||||.||||+++|+++..........+       ...++|++++.+|++|..++...++.++..|
T Consensus       150 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-------~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G  222 (505)
T 3nyq_A          150 DGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-------QWTGEDVLVQGLPLFHVHGLVLGILGPLRRG  222 (505)
T ss_dssp             CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-------TCCTTCEEEECCCTTSHHHHTTTTHHHHHHT
T ss_pred             CCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-------CCCCCcEEEEeccHHHHHHHHHHHHHHHhcC
Confidence            456789999999999999999999999999998877665544       2678899999999999999877688999999


Q ss_pred             cEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCC---CccccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107        134 MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAV---TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI  210 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~---~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~  210 (334)
                      +++++.+.+++..+++.+ ++++|+++++|+++..|++....   ....++++|.+++||+++++++.+++.+.++.   
T Consensus       223 ~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~---  298 (505)
T 3nyq_A          223 GSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAATGR---  298 (505)
T ss_dssp             CEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSC---
T ss_pred             CEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhcCC---
Confidence            999999999999999999 88999999999999999874322   23457789999999999999999999999864   


Q ss_pred             ceeeccCCCCCCCcccccccCCC----------------------Ccc---ccCcccc------ccccccCCcccccccc
Q psy12107        211 TIRQGYGMTETSPCTLYTRFAIP----------------------EAK---LGSTGQL------VMLGYLKNEEATKETV  259 (334)
Q Consensus       211 ~i~~~YG~tE~g~~~~~~~~~~~----------------------~~~---~~~~G~~------~~~gy~~~~~~~~~~~  259 (334)
                      +++|.||+||++..++.......                      +..   .+..|++      ++.||+++|+.|.+.|
T Consensus       299 ~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f  378 (505)
T 3nyq_A          299 RVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAF  378 (505)
T ss_dssp             CCEEEEEETTTEEEEECCTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTB
T ss_pred             eeecccchhhcccccccCCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhh
Confidence            79999999999865543222110                      001   1344555      7889999999999999


Q ss_pred             CCCCceecCceEEEecCCcEEEEccC-CceEEEcCEEee-----------------------------------------
Q psy12107        260 DSEGWLHTGDVAYYDEDGYFYIVDRT-KELIKVKGNQVA-----------------------------------------  297 (334)
Q Consensus       260 ~~~~~~~TGD~~~~~~dg~~~~~GR~-~d~i~~~G~~i~-----------------------------------------  297 (334)
                      ..++||+|||+|++++||+++++||+ ||+||++|++|+                                         
T Consensus       379 ~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~  458 (505)
T 3nyq_A          379 TEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPA  458 (505)
T ss_dssp             CTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTT
T ss_pred             cCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCC
Confidence            88999999999999999999999998 599999999999                                         


Q ss_pred             -----------------eeeeccCcEEEeecCCCCCCchhhHHHHhhh
Q psy12107        298 -----------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVF  328 (334)
Q Consensus       298 -----------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~  328 (334)
                                       ++++|.. |+++++||+|++|||+|++|++.
T Consensus       459 ~~~~~~~l~~~l~~~L~~~~~P~~-i~~v~~lP~t~~GKi~r~~L~~~  505 (505)
T 3nyq_A          459 APPALGTLADHVAARLAPHKRPRV-VRYLDAVPRNDMGKIMKRALNRD  505 (505)
T ss_dssp             SCCCHHHHHHHHHHHTCGGGSCSE-EEECSCCCC--------------
T ss_pred             CCCCHHHHHHHHHhhCCCCcCccE-EEEECCCCCCCCcCeeHHhhccC
Confidence                             6667777 99999999999999999999873

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.2e-49  Score=370.73  Aligned_cols=260  Identities=28%  Similarity=0.434  Sum_probs=203.7

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ..+++|+++|+|||||||.||+|+++|+++.++.......+       ...+++++++.+|++|.+++.. ++.++..|+
T Consensus       159 ~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-------~~~~~d~~l~~~p~~~~~g~~~-~~~~l~~G~  230 (501)
T 3ipl_A          159 SFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-------GFDRDTNWLSVLPIYHISGLSV-LLRAVIEGF  230 (501)
T ss_dssp             CCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-------CCCTTCEEEECSCTTSHHHHHH-HHHHHHHTC
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-------CCCccCEEEEeCcHHHHHHHHH-HHHHHHcCc
Confidence            45789999999999999999999999999988876655443       2678899999999999999987 788999999


Q ss_pred             EEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceee
Q psy12107        135 HMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQ  214 (334)
Q Consensus       135 ~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~  214 (334)
                      ++++.+.++++.+++.|+++++|+++++|+++..|.+.......   +||.+++||+++++++.+++.+ ++   ++++|
T Consensus       231 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~---~lr~i~~gG~~l~~~~~~~~~~-~~---~~~~~  303 (501)
T 3ipl_A          231 TVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPY---NLQKILLGGAKLSATMIETALQ-YN---LPIYN  303 (501)
T ss_dssp             EEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCT---TCCEEEECSSCCCHHHHHHHHH-TT---CCEEE
T ss_pred             eEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcC---cccEEEEeCCCCCHHHHHHHHH-hC---CCEec
Confidence            99999999999999999999999999999999999876543222   8999999999999999999987 44   48999


Q ss_pred             ccCCCCCCCcccccccCCC-------------------CccccCcccc------ccccccCCccccccccCCCCceecCc
Q psy12107        215 GYGMTETSPCTLYTRFAIP-------------------EAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGD  269 (334)
Q Consensus       215 ~YG~tE~g~~~~~~~~~~~-------------------~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD  269 (334)
                      .||+||++..+........                   ....+..|++      +++||+++++.+.. + .+|||+|||
T Consensus       304 ~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~GEl~v~g~~~~~gY~~~~~~t~~-~-~~g~~~TGD  381 (501)
T 3ipl_A          304 SFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGHGELMIKGANVMNGYLYPTDLTGT-F-ENGYFNTGD  381 (501)
T ss_dssp             EEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCCSSCCEEEEEESTTSCSCCSBSTTCCCS-E-ETTEEEEEE
T ss_pred             cccccccccceeecCccccccCCCCCCCCCCCcEEEEecCCCCCccEEEEeccchhhhhCcChhhcch-h-cCCceecCC
Confidence            9999998864432211100                   0012223443      78999999998887 5 689999999


Q ss_pred             eEEEecCCcEEEEccCCceEEEcCEEee----------------------------------------------------
Q psy12107        270 VAYYDEDGYFYIVDRTKELIKVKGNQVA----------------------------------------------------  297 (334)
Q Consensus       270 ~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------------------------------------------------  297 (334)
                      +|++++||+++++||.||+||++|++|+                                                    
T Consensus       382 l~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~l~~~l~~  461 (501)
T 3ipl_A          382 IAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDISKAQLIAYLSK  461 (501)
T ss_dssp             EEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCCCHHHHHHHHHH
T ss_pred             EEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCCCHHHHHHHHHh
Confidence            9999999999999999999999999999                                                    


Q ss_pred             ---eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCC
Q psy12107        298 ---PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       298 ---~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~  332 (334)
                         ++++|.. |+++++||+|++|||+|++||+..++.
T Consensus       462 ~L~~~~~P~~-i~~v~~lP~t~~GKi~R~~l~~~~~~~  498 (501)
T 3ipl_A          462 HLAKYKVPKH-FEKVDTLPYTSTGKLQRNKLYREGHHH  498 (501)
T ss_dssp             HSCGGGSCSE-EEECSSCC-------------------
T ss_pred             hCccccCCCE-EEEecccCCCCCCCEeHHHHhhccccc
Confidence               6667777 999999999999999999999987654

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=100.00  E-value=8.4e-50  Score=355.55  Aligned_cols=257  Identities=17%  Similarity=0.187  Sum_probs=210.9

Q ss_pred             CCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEE
Q psy12107         58 PNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMI  137 (334)
Q Consensus        58 ~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~  137 (334)
                      .+|+|||+|||||||.||||+++|+++.++.......+       ...++|++++.+|++|.+++.. ++.++..|++++
T Consensus        36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-------~~~~~d~~l~~~pl~h~~gl~~-~~~~l~~g~~~~  107 (358)
T 4gs5_A           36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-------SLGPGTRALVCLNVGYIAGLMM-LVRGMELDWELT  107 (358)
T ss_dssp             HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-------TCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEE
T ss_pred             CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-------CCCCCCEEEEECChHHHHHHHH-HHHHHHhCcEEE
Confidence            47899999999999999999999999998877665544       3678999999999999999877 677788888888


Q ss_pred             EcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccC
Q psy12107        138 TIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYG  217 (334)
Q Consensus       138 ~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG  217 (334)
                      +.++.  ...++.|+++++|+++++|+++..|++... ...++++||.+++||+++++++.+++++.    +++++|.||
T Consensus       108 ~~~~~--~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~----~~~~~~~YG  180 (358)
T 4gs5_A          108 VTEPT--ANPLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL----AMPVYQSYG  180 (358)
T ss_dssp             EECCC--SCTTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC----SSCEEEEEE
T ss_pred             ecCcc--ccHHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc----CceEEeccc
Confidence            77642  234678899999999999999999988765 45678999999999999999999999863    458999999


Q ss_pred             CCCCCCcccccccCCCCccccCcccc---ccccccCCcccccc-ccCCCCceecCceEEEecCCcEEEEccCCceEEEcC
Q psy12107        218 MTETSPCTLYTRFAIPEAKLGSTGQL---VMLGYLKNEEATKE-TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKG  293 (334)
Q Consensus       218 ~tE~g~~~~~~~~~~~~~~~~~~G~~---~~~gy~~~~~~~~~-~~~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G  293 (334)
                      +||++..++.......  ..+++|.+   +..+|.++++.... .+..++||+|||+|++|+|| +.++||.||+||++|
T Consensus       181 ~TEt~~~~~~~~~~~~--~~g~~~~~~pgv~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G  257 (358)
T 4gs5_A          181 MTETVSHVALKALNGP--EASELYVFLPGIQYGVDERGCLHISGAVTNGQTVQTNDLVEIHGNA-FQWIGRADNVINSGG  257 (358)
T ss_dssp             CGGGSSEEEEEECSST--TCCSCEEECTTCEEEECTTSEEEEESGGGTTCCEEEEEEEEECSSE-EEEEEEGGGEEEETT
T ss_pred             cccccceeeccccccc--ccceeeccCCCeEEEecCcCceEEecccccCcceecCCccccccCc-eEEcccccCeEEECC
Confidence            9999876665544433  33444433   55677766665433 34578999999999999988 667799999999999


Q ss_pred             EEee------------------------------------------------------------eeeeccCcEEEeecCC
Q psy12107        294 NQVA------------------------------------------------------------PYKKLAGGVKFLETIP  313 (334)
Q Consensus       294 ~~i~------------------------------------------------------------~~~~~~~~i~~v~~lP  313 (334)
                      ++|+                                                            .|++|+. |.++++||
T Consensus       258 ~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~-i~~v~~lP  336 (358)
T 4gs5_A          258 VKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPEALTERLTAEIRSRVSTYENPKH-IYFAKAFA  336 (358)
T ss_dssp             EEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCHHHHHHHHHHHHHHSCGGGSCSC-EEEESSCC
T ss_pred             EEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCCCcCHHHHHHHHHhhCCCCCCceE-EEEECCcC
Confidence            9999                                                            6677887 99999999


Q ss_pred             CCCCchhhHHHHhhhhcCCC
Q psy12107        314 RNPAGKVLRNELKVFGTNPK  333 (334)
Q Consensus       314 ~t~~GKi~r~~l~~~~~~~~  333 (334)
                      +|++|||+|++|++.+++..
T Consensus       337 ~t~~GKi~R~~L~~~l~e~~  356 (358)
T 4gs5_A          337 KTQTDKIDKRATFQKLSDSS  356 (358)
T ss_dssp             BCTTSCBCHHHHHHHTC---
T ss_pred             CCCCCChhHHHHHHHhhhhc
Confidence            99999999999999987754

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=4.4e-49  Score=367.79  Aligned_cols=283  Identities=20%  Similarity=0.244  Sum_probs=233.2

Q ss_pred             ccchhhhhcCC-CCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecc
Q psy12107         37 IFGFKQLVTSQ-PPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLP  115 (334)
Q Consensus        37 ~~~~~~ll~~~-~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  115 (334)
                      ...+++++... ..........++|+++|+|||||||.||+|+++|+++.+........+       ....++++++.+|
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-------~~~~~d~~l~~~p  192 (511)
T 3e7w_A          120 TVSAEELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-------PVSGGKIFLNQAP  192 (511)
T ss_dssp             EEEHHHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-------TTTTTCEEEECSC
T ss_pred             eecHhhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-------CCCccceEEEeCC
Confidence            44566665321 111222346789999999999999999999999999988876655443       2678899999999


Q ss_pred             hhhhhHHHHHHHHHHHhCcEEEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCC
Q psy12107        116 FFHIYGFNGILNVVMMYGMHMITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAP  192 (334)
Q Consensus       116 ~~~~~~~~~~~~~~~~~G~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~  192 (334)
                      ++|..++.. ++.++..|+++++.+.   +++..+++.|+++++|+++++|+++..++.........++++|.+++||++
T Consensus       193 ~~~~~~~~~-~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~  271 (511)
T 3e7w_A          193 FSFDLSVMD-LYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEV  271 (511)
T ss_dssp             TTSTHHHHH-HHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSC
T ss_pred             ccHHHHHHH-HHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCC
Confidence            999999765 7889999999999875   689999999999999999999999999998877777788999999999999


Q ss_pred             CCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccC---------------------------CCCccccCcccc--
Q psy12107        193 ATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFA---------------------------IPEAKLGSTGQL--  243 (334)
Q Consensus       193 l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~---------------------------~~~~~~~~~G~~--  243 (334)
                      +++++.+++.+.|+  ++++++.||+||++.+++.....                           ..+...+..|++  
T Consensus       272 l~~~~~~~~~~~~~--~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v  349 (511)
T 3e7w_A          272 LPVSVAKALLERFP--KAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVI  349 (511)
T ss_dssp             CCHHHHHHHHHHCT--TCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEE
T ss_pred             CCHHHHHHHHHHCC--CcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEE
Confidence            99999999999996  56899999999998655421110                           011123444554  


Q ss_pred             ----ccccccCCccccccccCC-CC--ceecCceEEEecCCcEEEEccCCceEEEcCEEee-------------------
Q psy12107        244 ----VMLGYLKNEEATKETVDS-EG--WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-------------------  297 (334)
Q Consensus       244 ----~~~gy~~~~~~~~~~~~~-~~--~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-------------------  297 (334)
                          ++.||+++|+.|.+.|.. +|  ||+|||+|++ +||+++++||.||+||++|++|+                   
T Consensus       350 ~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~v  428 (511)
T 3e7w_A          350 AGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVV  428 (511)
T ss_dssp             ESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEE
T ss_pred             ecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEE
Confidence                788999999999998832 22  7999999999 69999999999999999999999                   


Q ss_pred             ------------------------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 ------------------------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 ------------------------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                                                .+++|.. ++++++||+|++|||+|++|++.+.+
T Consensus       429 v~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~-~~~v~~lP~t~~GKi~R~~L~~~~~~  503 (511)
T 3e7w_A          429 IPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRK-FIYQDHIQMTANGKIDRKRIGEEVLV  503 (511)
T ss_dssp             EEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSE-EEECSCCCBCTTSCBCHHHHHHHHHH
T ss_pred             EEEcCCCCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCee-EEEeccCCCCCCcCccHHHHHhHHhh
Confidence                                                      5566676 99999999999999999999998754

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=7.1e-49  Score=373.13  Aligned_cols=263  Identities=20%  Similarity=0.257  Sum_probs=217.5

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ...+++|+++|+|||||||.||||+++|+++.+.... ...+       ...++++++...|++|..++.. ++.++..|
T Consensus       159 ~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-------~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G  229 (620)
T 4dg8_A          159 PCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-------AFAPQMRFLVNSPLSFDAATLE-IWGALLNG  229 (620)
T ss_dssp             CCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-------TTCTTCEEEECSCTTSTHHHHH-HHHHHTTT
T ss_pred             CCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-------CCCCCCEEEEECccCHHHHHHH-HHHHHhcC
Confidence            3456899999999999999999999999998776543 1111       2678999999999999999876 78899999


Q ss_pred             cEEEEcC--CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107        134 MHMITIP--KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT  211 (334)
Q Consensus       134 ~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~  211 (334)
                      +++++.+  .+++..+++.|+++++|+++++|+++..|.+.   ....+++||.+++||+++++++.+++.+.++  +++
T Consensus       230 ~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~---~~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~--~~~  304 (620)
T 4dg8_A          230 GCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDL---DPDCLGGLRQLLTGGDILSVPHVRRALLRHP--RLH  304 (620)
T ss_dssp             CEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHH---CGGGGTTCSEEEEESSCCCHHHHHHHHHHCT--TCE
T ss_pred             CEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhc---ChhhCCCccEEEEEeCcCCHHHHHHHHHhCC--CeE
Confidence            9999864  58999999999999999999999999999864   3456889999999999999999999888876  678


Q ss_pred             eeeccCCCCCCCcccccccCC--------------------------CC-ccccCcccc------ccccccCCccccccc
Q psy12107        212 IRQGYGMTETSPCTLYTRFAI--------------------------PE-AKLGSTGQL------VMLGYLKNEEATKET  258 (334)
Q Consensus       212 i~~~YG~tE~g~~~~~~~~~~--------------------------~~-~~~~~~G~~------~~~gy~~~~~~~~~~  258 (334)
                      ++|.||+||++.+++......                          .+ ...|..|++      +++||+++|+.|++.
T Consensus       305 l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~  384 (620)
T 4dg8_A          305 LVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRAS  384 (620)
T ss_dssp             EEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHH
T ss_pred             EEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhh
Confidence            999999999986554221100                          00 223445555      789999999999999


Q ss_pred             cCCC-------CceecCceEEEecCCcEEEEccCCceEEEcCEEee----------------------------------
Q psy12107        259 VDSE-------GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA----------------------------------  297 (334)
Q Consensus       259 ~~~~-------~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------------------------------  297 (334)
                      |..+       +||+|||+|++++||+++++||.||+||++|++|+                                  
T Consensus       385 f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~  464 (620)
T 4dg8_A          385 FVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAW  464 (620)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEE
T ss_pred             hccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEE
Confidence            8543       79999999999999999999999999999999999                                  


Q ss_pred             ----------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 ----------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 ----------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                      .|++|.. ++++++||+|++|||||++|++.+.+
T Consensus       465 ~~~~~~~~~~l~~~Lp~y~~P~~-~~~v~~lP~t~~GKidR~~L~~~~~~  513 (620)
T 4dg8_A          465 TGKADASPQALLRQLPTWQRPHA-CVRVEALPLTAHGKLDRAALLRRLEE  513 (620)
T ss_dssp             EECTTCCCHHHHHHSCGGGSCSE-EEECSSCCCC----CCHHHHHHHTCS
T ss_pred             ecChHHHHHHHHHhChhhcCCcE-EEEECcCCCCcccCHhHHHHhhcccc
Confidence                            5667777 99999999999999999999987654

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=1.2e-48  Score=365.88  Aligned_cols=271  Identities=21%  Similarity=0.274  Sum_probs=219.0

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ...+++|+++|+|||||||.||||+++|+++.+...........     .....+++++..|++|..+... ++.++..|
T Consensus       140 ~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~-~~~~l~~G  213 (521)
T 3l8c_A          140 HSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAF-----DVPKQPQMLAQPPYSFDLSVMY-WAPTLALG  213 (521)
T ss_dssp             SCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTT-----CCCSSCEEECCSCTTSGGGHHH-HHHHHHTT
T ss_pred             CCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcccc-----CCCCCCeEEecCCccHHHHHHH-HHHHHhcC
Confidence            45678999999999999999999999999998776654433111     2567889999999999888765 78889999


Q ss_pred             cEEEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107        134 MHMITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI  210 (334)
Q Consensus       134 ~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~  210 (334)
                      +++++.+.   .++..+++.|+++++|++.++|+++..+..........+++||.+++||+++++++.+++.+.++  ++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~--~~  291 (521)
T 3l8c_A          214 GTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFP--SA  291 (521)
T ss_dssp             CEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCT--TC
T ss_pred             CEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCC--Cc
Confidence            99998876   38999999999999999999999999998877766778899999999999999999999999996  56


Q ss_pred             ceeeccCCCCCCCcccccccC---------------------------CCCccccCcccc------ccccccCCcccccc
Q psy12107        211 TIRQGYGMTETSPCTLYTRFA---------------------------IPEAKLGSTGQL------VMLGYLKNEEATKE  257 (334)
Q Consensus       211 ~i~~~YG~tE~g~~~~~~~~~---------------------------~~~~~~~~~G~~------~~~gy~~~~~~~~~  257 (334)
                      ++++.||+||++.+++.....                           ..+...+..|++      ++.||+++|+.|.+
T Consensus       292 ~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~  371 (521)
T 3l8c_A          292 KIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAE  371 (521)
T ss_dssp             EEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHH
T ss_pred             eEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEEecccccChhhcCCchHhhc
Confidence            899999999998755421110                           011223444554      78899999999998


Q ss_pred             cc---CCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee-------------------------------------
Q psy12107        258 TV---DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-------------------------------------  297 (334)
Q Consensus       258 ~~---~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-------------------------------------  297 (334)
                      .|   +.++||+|||+|++|+||+++++||.||+||++|++|+                                     
T Consensus       372 ~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv  451 (521)
T 3l8c_A          372 AFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIV  451 (521)
T ss_dssp             HEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEE
T ss_pred             cCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEE
Confidence            87   56789999999999999999999999999999999999                                     


Q ss_pred             ----------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcCCC
Q psy12107        298 ----------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTNPK  333 (334)
Q Consensus       298 ----------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~~~  333 (334)
                                                  ++++|.. |.++++||+|++|||+|++|++.+.+..
T Consensus       452 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~-i~~v~~lP~t~~GKidr~~L~~~~~~~~  514 (521)
T 3l8c_A          452 VKDGVKERFDRELELTKAIKASVKDHMMSYMMPSK-FLYRDSLPLTPNGKIDIKTLINEVNNRE  514 (521)
T ss_dssp             ECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSE-EEECSSCCBCTTSSBCHHHHHHHTC---
T ss_pred             ecCccccccccchhhHHHHHHHHHhhCccccCCeE-EEEecccCCCCCcCccHHHHhhhhhcCC
Confidence                                        3455666 9999999999999999999999987654

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=2.3e-48  Score=367.35  Aligned_cols=261  Identities=25%  Similarity=0.339  Sum_probs=178.2

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ....++|+++|+|||||||.||||+++|+++.+...... ..       ...+++++++.+|++|..+... ++.++..|
T Consensus       209 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~-~~-------~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G  279 (570)
T 4gr5_A          209 TGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQD-YA-------GFGPDEVFLQCSPVSWDAFGLE-LFGALLFG  279 (570)
T ss_dssp             CCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSCC-SS-------CCSTTCEEEECSCTTSSTHHHH-HHHHHTTT
T ss_pred             CCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhhh-hc-------CCCCCCEEEEecCccHHHHHHH-HHHHHhcC
Confidence            456789999999999999999999999999876654321 11       2678899999999988766554 68889999


Q ss_pred             cEEEEcC--CCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107        134 MHMITIP--KFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT  211 (334)
Q Consensus       134 ~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~  211 (334)
                      +++++.+  .+++..+++.|+++++|++.++|+++..|++..   ...+++||.+++||+++++++.+++.+.++  +++
T Consensus       280 ~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~---~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~--~~~  354 (570)
T 4gr5_A          280 ARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEV---PEAFEGVRYAITGGEPASVPHVAKARRDHP--ALR  354 (570)
T ss_dssp             CEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCT--TCE
T ss_pred             CEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhc---hhhCCCceEEEEecccCCHHHHHHHHHhCC--CcE
Confidence            9999876  478999999999999999999999999998754   346889999999999999999999999986  568


Q ss_pred             eeeccCCCCCCCcccccccCC--------------------------CCccccCcccc------ccccccCCcccccccc
Q psy12107        212 IRQGYGMTETSPCTLYTRFAI--------------------------PEAKLGSTGQL------VMLGYLKNEEATKETV  259 (334)
Q Consensus       212 i~~~YG~tE~g~~~~~~~~~~--------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~  259 (334)
                      +++.||+||++.+.+......                          .+...|..|++      ++.||+++|+.|.+.|
T Consensus       355 l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f  434 (570)
T 4gr5_A          355 LGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERF  434 (570)
T ss_dssp             EEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHE
T ss_pred             EEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeecccchhcCCCchhhhccc
Confidence            999999999986554321100                          01122334444      7889999999999888


Q ss_pred             CCC--------CceecCceEEEecCCcEEEEccCCceEEEcCEEee----------------------------------
Q psy12107        260 DSE--------GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA----------------------------------  297 (334)
Q Consensus       260 ~~~--------~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~----------------------------------  297 (334)
                      ..+        +||+|||+|++|+||+++++||+||+||++|++|+                                  
T Consensus       435 ~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~  514 (570)
T 4gr5_A          435 VADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAY  514 (570)
T ss_dssp             EECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-----------------------------------------------
T ss_pred             ccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEE
Confidence            433        79999999999999999999999999999999999                                  


Q ss_pred             ------------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhh
Q psy12107        298 ------------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFG  329 (334)
Q Consensus       298 ------------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~  329 (334)
                                              .+++|.. ++++++||+|++|||+|++|++..
T Consensus       515 vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~~-i~~v~~lP~t~~GKi~R~~L~~~g  569 (570)
T 4gr5_A          515 VVAERADAPPDAAELRRHVAEALPAYMVPVE-CVPVDELPRTPNGKLDRRALTGSG  569 (570)
T ss_dssp             --------------------------------------------------------
T ss_pred             EEecCCCCCcCHHHHHHHHHhhCccccCCcE-EEEcccCCCCCCcCcchHhhhccC
Confidence                                    5666777 999999999999999999999764

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=2.2e-47  Score=359.80  Aligned_cols=256  Identities=24%  Similarity=0.328  Sum_probs=208.5

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCc
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGM  134 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~  134 (334)
                      ...++|+++|+|||||||.||||+++|+++.+........+       ...++|++++..|++|..++.. ++.++..|+
T Consensus       178 ~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-------~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~G~  249 (563)
T 1amu_A          178 PSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-------NVTEKDRIGQFASISFDASVWE-MFMALLTGA  249 (563)
T ss_dssp             CCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-------CCCTTCEEEECSCTTSTHHHHH-HHHHHTTTC
T ss_pred             CCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-------CCCCCCEEEEeCCccHHHHHHH-HHHHHHCCC
Confidence            45678999999999999999999999999987766554433       2678899999999999988765 678899999


Q ss_pred             EEEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107        135 HMITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT  211 (334)
Q Consensus       135 ~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~  211 (334)
                      ++++.+.   +++..+++.|+++++|+++++|+++..|...      .+++||.+++||+++++++.+++.+.     ++
T Consensus       250 ~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~-----~~  318 (563)
T 1amu_A          250 SLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK-----VT  318 (563)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT-----SE
T ss_pred             EEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC-----Ce
Confidence            9999875   6899999999999999999999998877532      46789999999999999999988764     37


Q ss_pred             eeeccCCCCCCCcccccccCC-C------------------------CccccCcccc------ccccccCCccccccccC
Q psy12107        212 IRQGYGMTETSPCTLYTRFAI-P------------------------EAKLGSTGQL------VMLGYLKNEEATKETVD  260 (334)
Q Consensus       212 i~~~YG~tE~g~~~~~~~~~~-~------------------------~~~~~~~G~~------~~~gy~~~~~~~~~~~~  260 (334)
                      +++.||+||++.+++...... .                        ....+..|++      ++.||+++|+.|.+.|.
T Consensus       319 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~  398 (563)
T 1amu_A          319 YINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFV  398 (563)
T ss_dssp             EEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEE
T ss_pred             EEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcc
Confidence            999999999986554321110 0                        0112233443      78999999999998884


Q ss_pred             C------CCceecCceEEEecCCcEEEEccCCceEEEcCEEee-------------------------------------
Q psy12107        261 S------EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-------------------------------------  297 (334)
Q Consensus       261 ~------~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-------------------------------------  297 (334)
                      .      ++||+|||+|++|+||+++++||.||+||++|++|+                                     
T Consensus       399 ~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~  478 (563)
T 1amu_A          399 DNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVS  478 (563)
T ss_dssp             ECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             cCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEe
Confidence            2      459999999999999999999999999999999999                                     


Q ss_pred             ------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhc
Q psy12107        298 ------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGT  330 (334)
Q Consensus       298 ------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~  330 (334)
                                        ++++|.. |+++++||+|++|||+|++|++...
T Consensus       479 ~~~~~~~~l~~~l~~~L~~y~~P~~-i~~v~~lP~t~~GKi~r~~L~~~~~  528 (563)
T 1amu_A          479 EKHIPLEQLRQFSSEELPTYMIPSY-FIQLDKMPLTSNGKIDRKQLPEPDL  528 (563)
T ss_dssp             SSCCCHHHHHHHHHHHSCGGGSCSE-EEECSSCCBCTTSSBCGGGSCCCCC
T ss_pred             CCCCCHHHHHHHHHhhCchhhCCcE-EEEecccCCCCCcChhHHhcCCccc
Confidence                              5667777 9999999999999999999998753

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=5.8e-48  Score=366.46  Aligned_cols=271  Identities=24%  Similarity=0.358  Sum_probs=222.8

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ...+++|+++|+|||||||.||||+++|+++.++.......+       ...+++++++.+|++|.+++...++.++..|
T Consensus       162 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-------~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G  234 (590)
T 3kxw_A          162 TSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-------HMNDETIIFSWLPPHHDMGLIGCILTPIYGG  234 (590)
T ss_dssp             CCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-------TCCTTCEEEECSCTTSHHHHHTTTHHHHHHT
T ss_pred             CCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-------CCCCcCeEEEecCCCcchhhHHHHHHHHhcC
Confidence            456789999999999999999999999999998887665544       3678999999999999999887678899999


Q ss_pred             cEEEEcCCC----CHHHHHHHHHHcCCeEEeechHHHHHHhcCCC---CCccccccceeeeecCCCCCHHHHHHHHHHhc
Q psy12107        134 MHMITIPKF----TPETYIECVVKYKPTILFVVPSLLLFLASHPA---VTPEHLASIREVTCGAAPATKSLIDKFKQKVQ  206 (334)
Q Consensus       134 ~~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~---~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~  206 (334)
                      +++++.+.+    ++..+++.|+++++|++.++|+++..+.+...   ....++++||.+++||+++++++.+++.+.|+
T Consensus       235 ~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~  314 (590)
T 3kxw_A          235 IQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHFYQAFK  314 (590)
T ss_dssp             CEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHHHHHHG
T ss_pred             ceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHHHHHHH
Confidence            999998765    79999999999999999999999998876532   34567899999999999999999999999985


Q ss_pred             cC---CCceeeccCCCCCCCcccccccC------------------------------------------------CCCc
Q psy12107        207 RE---DITIRQGYGMTETSPCTLYTRFA------------------------------------------------IPEA  235 (334)
Q Consensus       207 ~~---~~~i~~~YG~tE~g~~~~~~~~~------------------------------------------------~~~~  235 (334)
                      ..   +++++|.||+||++.+++.....                                                ..+.
T Consensus       315 ~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~v~i~d~~~~~~~  394 (590)
T 3kxw_A          315 EFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPC  394 (590)
T ss_dssp             GGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSEEEEECTTTCCBC
T ss_pred             HcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCCeEEEcCCCCcCC
Confidence            31   34799999999998765532110                                                0112


Q ss_pred             cccCcccc------ccccccCCccccccccCC------CC--ceecCceEEEecCCcEEEEccCCceEEEcCEEee----
Q psy12107        236 KLGSTGQL------VMLGYLKNEEATKETVDS------EG--WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA----  297 (334)
Q Consensus       236 ~~~~~G~~------~~~gy~~~~~~~~~~~~~------~~--~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~----  297 (334)
                      ..+..|++      ++.||+++|+.|.+.|..      +|  ||+|||+|+++ ||.++++||.||+||++|++|+    
T Consensus       395 ~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eI  473 (590)
T 3kxw_A          395 DFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDI  473 (590)
T ss_dssp             CTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHH
T ss_pred             CCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHH
Confidence            23444554      788999999999998853      24  99999999998 9999999999999999999998    


Q ss_pred             ----------------------------------------------------------eeeeccCcEEEe--ecCCCCCC
Q psy12107        298 ----------------------------------------------------------PYKKLAGGVKFL--ETIPRNPA  317 (334)
Q Consensus       298 ----------------------------------------------------------~~~~~~~~i~~v--~~lP~t~~  317 (334)
                                                                                .++.|...+.++  ++||+|++
T Consensus       474 E~~l~~~~~~v~~~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP~t~s  553 (590)
T 3kxw_A          474 EFSLMHSPLHHVLGKCAAFVIQEEHEYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMPHTTS  553 (590)
T ss_dssp             HHHHHHSGGGGGEEEEEEEEEEETTEEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSCCCSC
T ss_pred             HHHHHhcCccccCccEEEEEecCCCCceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccCcCCC
Confidence                                                                      133443236776  69999999


Q ss_pred             chhhHHHHhhhhcCC
Q psy12107        318 GKVLRNELKVFGTNP  332 (334)
Q Consensus       318 GKi~r~~l~~~~~~~  332 (334)
                      |||+|++||+.+.+.
T Consensus       554 GKi~R~~L~~~~~~~  568 (590)
T 3kxw_A          554 GKIRRNFCRKHLLDK  568 (590)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHcC
Confidence            999999999987543

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=3.6e-45  Score=373.91  Aligned_cols=261  Identities=24%  Similarity=0.322  Sum_probs=217.3

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ....++++|||+|||||||.||||+++|+++.+. ......+       ...++++++...|+.|..+... ++.++..|
T Consensus       602 ~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-------~~~~~d~~l~~~~~~fd~~~~~-~~~~l~~G  672 (1304)
T 2vsq_A          602 TAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-------AFSDQDTFLSVSNYAFDAFTFD-FYASMLNA  672 (1304)
T ss_dssp             CCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-------CCCTTCEEEECSCTTSTHHHHH-HHHHHTTT
T ss_pred             CCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-------CCCCCCEEEEECCccHHHHHHH-HHHHHHcC
Confidence            3567899999999999999999999999999865 2222222       2678899999999988877665 78899999


Q ss_pred             cEEEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107        134 MHMITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI  210 (334)
Q Consensus       134 ~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~  210 (334)
                      +++++.+.   .++..+.+.|+++++|+++++|+++..|.+..   ...+++||.+++|||++++++.+++.+.++  ++
T Consensus       673 ~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~--~~  747 (1304)
T 2vsq_A          673 ARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILFGGERASVPHVRKALRIMG--PG  747 (1304)
T ss_dssp             CEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEEESSCCCHHHHHHHHHHHC--TT
T ss_pred             CEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEEecCCCCHHHHHHHHHhCC--CC
Confidence            99999874   68999999999999999999999999997642   245788999999999999999999999987  56


Q ss_pred             ceeeccCCCCCCCcccccccCC--------------------------CCccccCcccc------ccccccCCccccccc
Q psy12107        211 TIRQGYGMTETSPCTLYTRFAI--------------------------PEAKLGSTGQL------VMLGYLKNEEATKET  258 (334)
Q Consensus       211 ~i~~~YG~tE~g~~~~~~~~~~--------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~  258 (334)
                      +++|.||+||++.+++......                          .+...|..|++      +++||+++|+.|++.
T Consensus       748 ~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~  827 (1304)
T 2vsq_A          748 KLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEK  827 (1304)
T ss_dssp             CEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHH
T ss_pred             EEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEeccccCccccCCcccchhh
Confidence            8999999999987554322110                          01122344444      789999999999998


Q ss_pred             cCC------CCceecCceEEEecCCcEEEEccCCceEEEcCEEee-----------------------------------
Q psy12107        259 VDS------EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA-----------------------------------  297 (334)
Q Consensus       259 ~~~------~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~-----------------------------------  297 (334)
                      |..      ++||+|||+|++++||.++++||.||+||++|++|+                                   
T Consensus       828 f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~v  907 (1304)
T 2vsq_A          828 FIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYL  907 (1304)
T ss_dssp             EEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEE
T ss_pred             hccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEE
Confidence            842      459999999999999999999999999999999999                                   


Q ss_pred             --------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhh
Q psy12107        298 --------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFG  329 (334)
Q Consensus       298 --------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~  329 (334)
                                          .|++|.. ++++++||+|++|||||++|++..
T Consensus       908 v~~~~~~~~~l~~~l~~~Lp~ymvP~~-~~~l~~lP~t~~GKidR~~L~~~~  958 (1304)
T 2vsq_A          908 VNRTQLSAEDVKAHLKKQLPAYMVPQT-FTFLDELPLTTNGKVNKRLLPKPD  958 (1304)
T ss_dssp             ECSSSSCHHHHHHHHHHHSCGGGSCSE-EEEESCCCCCSSCSSCCSCCCCCC
T ss_pred             eCCCCCCHHHHHHHHHHhChHhhhccE-EEEecccCCCCCcccCHhhcCCcc
Confidence                                5666777 999999999999999999998653

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1.8e-45  Score=347.32  Aligned_cols=268  Identities=21%  Similarity=0.216  Sum_probs=171.2

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccc-cCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHh
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIV-NHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMY  132 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~  132 (334)
                      ....++++++|+|||||||.||||+++|+++......+...... ..........+++++..|+.|..++.. ++.++..
T Consensus       170 ~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  248 (562)
T 3ite_A          170 NNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGE-MFLAWRF  248 (562)
T ss_dssp             CCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHH-HHHHHHT
T ss_pred             cCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHH-HHHHHhc
Confidence            34567899999999999999999999999998776544322100 000002567789999999988887765 6788899


Q ss_pred             CcEEEEcCCC-CHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107        133 GMHMITIPKF-TPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT  211 (334)
Q Consensus       133 G~~~~~~~~~-~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~  211 (334)
                      |+++++.+.+ .++.+.+.++++++|+++++|+++..+..    ...++++||.+++||+++++++.+++.+.++   ++
T Consensus       249 g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~----~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~---~~  321 (562)
T 3ite_A          249 GLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL----VPEDAPHLVYLGVGGEKMTPRTQQIWSSSDR---VA  321 (562)
T ss_dssp             TCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC----CGGGSTTCCEEEEESSCCCHHHHHHHTTCSS---CE
T ss_pred             ccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc----CccccCceEEEEEecCCCCHHHHHHHhhCCC---cE
Confidence            9999987654 35778899999999999999999988754    3457889999999999999999999988765   48


Q ss_pred             eeeccCCCCCCCcccccccCC------------------------CCccccCcccc------ccccccCCccccccccCC
Q psy12107        212 IRQGYGMTETSPCTLYTRFAI------------------------PEAKLGSTGQL------VMLGYLKNEEATKETVDS  261 (334)
Q Consensus       212 i~~~YG~tE~g~~~~~~~~~~------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~  261 (334)
                      ++|.||+||++..++......                        .....+..|++      ++.|||++|+.+...+ .
T Consensus       322 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~-~  400 (562)
T 3ite_A          322 LVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCD-I  400 (562)
T ss_dssp             EEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEE-E
T ss_pred             EEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCcccccccc-C
Confidence            999999999986554321110                        11233445554      7889999999888765 3


Q ss_pred             CC--ceecCceEEEecCCcEEEEccCCceEEEcCEEee------------------------------------------
Q psy12107        262 EG--WLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA------------------------------------------  297 (334)
Q Consensus       262 ~~--~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~------------------------------------------  297 (334)
                      +|  ||+|||+|++|+||+++++||.||+||++|++|+                                          
T Consensus       401 ~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~  480 (562)
T 3ite_A          401 NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGA  480 (562)
T ss_dssp             TTEEEEEEEEEEEECTTSCEEEEEEC------------------------------------------------------
T ss_pred             CCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccc
Confidence            55  9999999999999999999999999999999998                                          


Q ss_pred             -----------------------------eeeeccCcEEEeecCCCC-CCchhhHHHHhhhhcC
Q psy12107        298 -----------------------------PYKKLAGGVKFLETIPRN-PAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 -----------------------------~~~~~~~~i~~v~~lP~t-~~GKi~r~~l~~~~~~  331 (334)
                                                   +|++|+. |+++++||+| ++|||+|++|++++.+
T Consensus       481 ~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~-i~~v~~lP~t~~~GKi~r~~L~~~~~~  543 (562)
T 3ite_A          481 AVRGELRWINENYKEINNSLRQACEQTLPAYMVPDF-IIPISFIPLRDTSAKTDAKALEHMFHT  543 (562)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             cccccccccccchhhHHHHHHHHHHhhCCcccCCcE-EEEeccCCCCCCCCcchHHHHHHHHhc
Confidence                                         3445666 9999999998 9999999999998764

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=100.00  E-value=9.9e-42  Score=312.06  Aligned_cols=229  Identities=17%  Similarity=0.140  Sum_probs=182.1

Q ss_pred             CCCC-CCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         55 KISP-NDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        55 ~~~~-~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      .+++ +++++++|||||||.||+|+++|+++..+...........    ...++|+++..+|+.|..+....++.++..|
T Consensus        81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G  156 (436)
T 3qov_A           81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMV----GIRKTDVFQNSSGYGMFTGGLGFQYGAERLG  156 (436)
T ss_dssp             CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHT----TCCTTSEEEECSCCTTCHHHHHHHHHHHHHT
T ss_pred             cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHc----CCCCCCEEEECcccccchhHHHHHHHHHHcC
Confidence            4566 8999999999999999999999999977655443221111    2678899999999877776666678889999


Q ss_pred             cEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCcc--ccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107        134 MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE--HLASIREVTCGAAPATKSLIDKFKQKVQREDIT  211 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~--~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~  211 (334)
                      +++++.+.++++.+++.|+++++|+++++|+++..|++.......  .+++||.+++||+++++++.+++++.|+.   +
T Consensus       157 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~---~  233 (436)
T 3qov_A          157 CLTVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNV---K  233 (436)
T ss_dssp             CEEECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTS---E
T ss_pred             CEEEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCc---c
Confidence            999998888999999999999999999999999999876433333  37899999999999999999999999964   8


Q ss_pred             eeeccCCCCCCCc-ccccccC--------------------CCCccccCccccccccccCCccccccccCCCCceecCce
Q psy12107        212 IRQGYGMTETSPC-TLYTRFA--------------------IPEAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTGDV  270 (334)
Q Consensus       212 i~~~YG~tE~g~~-~~~~~~~--------------------~~~~~~~~~G~~~~~gy~~~~~~~~~~~~~~~~~~TGD~  270 (334)
                      ++|.||+||+++. .......                    ......|..|+++.+|.      +...+ +++||+|||+
T Consensus       234 v~~~YG~TE~~~~~~~~~~~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~------~~~~~-~~~~y~TGDl  306 (436)
T 3qov_A          234 AYNSFGMTEMNGPGVAFECQEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTL------DREMM-PLIRYRTRDL  306 (436)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEES------SCCSS-CCCSEEEEEE
T ss_pred             EEecCcchhhcCCeeEEecCCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEecc------CcCCc-eEEEEEcCCE
Confidence            9999999999533 2211110                    01123345566666663      33444 6899999999


Q ss_pred             EEEecCC------c---EEEEccCCceEEEcCEEee
Q psy12107        271 AYYDEDG------Y---FYIVDRTKELIKVKGNQVA  297 (334)
Q Consensus       271 ~~~~~dg------~---~~~~GR~~d~i~~~G~~i~  297 (334)
                      |+++++|      .   ++++||.||+||++|++|+
T Consensus       307 ~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~  342 (436)
T 3qov_A          307 TRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIF  342 (436)
T ss_dssp             ECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEEC
T ss_pred             EEEcCCCCCCCCCccccCcccCccCCEEEECCEEEC
Confidence            9999998      4   6999999999999999999

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=100.00  E-value=1.4e-40  Score=304.58  Aligned_cols=229  Identities=20%  Similarity=0.217  Sum_probs=178.6

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecch-hhhhHHHHHHHHHHHh
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPF-FHIYGFNGILNVVMMY  132 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~  132 (334)
                      ..++++++++++|||||||.||+|+++|+++..+...........    ...++|+++..+|+ +|..++.. .+.++..
T Consensus        85 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~----~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~  159 (437)
T 2y27_A           85 FAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAA----GARRGDKVHVSYGYGLFTGGLGA-HYGAERA  159 (437)
T ss_dssp             CSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHT----TCCTTCEEEECSCCSSSHHHHHH-HHHHHHT
T ss_pred             ccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc----CCCCCCEEEEcccccccccchHH-HHHHHHc
Confidence            345678999999999999999999999999876654333211000    25788999999998 67766655 6788999


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCcc--ccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107        133 GMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE--HLASIREVTCGAAPATKSLIDKFKQKVQREDI  210 (334)
Q Consensus       133 G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~--~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~  210 (334)
                      |+++++.+.++++.+++.|+++++|+++++|+++..|++.......  .++++|.+++||+++++++.+++++.|+.   
T Consensus       160 G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~---  236 (437)
T 2y27_A          160 GLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGI---  236 (437)
T ss_dssp             TCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTS---
T ss_pred             CCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCc---
Confidence            9999988888999999999999999999999999999875332222  35789999999999999999999999964   


Q ss_pred             ceeeccCCCCC-CC-cccccccCC--------------------CCccccCccccccccccCCccccccccCCCCceecC
Q psy12107        211 TIRQGYGMTET-SP-CTLYTRFAI--------------------PEAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTG  268 (334)
Q Consensus       211 ~i~~~YG~tE~-g~-~~~~~~~~~--------------------~~~~~~~~G~~~~~gy~~~~~~~~~~~~~~~~~~TG  268 (334)
                      ++++.||+||+ +. +...+....                    .+...|..|+++.+|.      +.+.+ +++||+||
T Consensus       237 ~v~~~YG~TE~~g~~~~~~~~~~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~------t~~~~-~~~~y~TG  309 (437)
T 2y27_A          237 DAVDIYGLSEVMGPGVASECVETKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL------TKEAL-PIIRYRTR  309 (437)
T ss_dssp             EEEEEEEETTTTEEEEEECCTTTCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------SCSSS-CCCSEEEE
T ss_pred             CEEecCCchhhcCCeeEEecCCCCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecC------CcCCc-hhheeecC
Confidence            89999999997 43 222221110                    0112344556566553      33445 68999999


Q ss_pred             ceEEEec-CCcE-----EEEccCCceEEEcCEEee
Q psy12107        269 DVAYYDE-DGYF-----YIVDRTKELIKVKGNQVA  297 (334)
Q Consensus       269 D~~~~~~-dg~~-----~~~GR~~d~i~~~G~~i~  297 (334)
                      |+|++++ +|++     ++.||.||+||++|++|+
T Consensus       310 Dl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~  344 (437)
T 2y27_A          310 DLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVF  344 (437)
T ss_dssp             EEECEECCSSSSSCEECCCCEEGGGCEEETTEEEC
T ss_pred             CEEEEeCCCCCCccccCccccccCCeEEECCeEEC
Confidence            9999999 6985     899999999999999999

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=100.00  E-value=3.2e-40  Score=302.69  Aligned_cols=229  Identities=20%  Similarity=0.221  Sum_probs=178.6

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecch-hhhhHHHHHHHHHHHh
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPF-FHIYGFNGILNVVMMY  132 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~  132 (334)
                      ..++++++++++|||||||.||+|+++|+++..............    ...++|+++..+|+ +|..++.. .+.++..
T Consensus        87 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~----~~~~~d~~l~~~~~~~~~~~~~~-~~~~~~~  161 (443)
T 2y4o_A           87 FAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAA----GGRPGDTLHNAFGYGLFTGGLGI-HYGAERL  161 (443)
T ss_dssp             CSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHT----TCCTTCEEEECSCCSSSHHHHHH-HHHHHHH
T ss_pred             cCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHc----CCCCCCEEEEeccCcccccHHHH-HHHHHHc
Confidence            345678999999999999999999999999876654333211010    25788999999998 46655554 6788899


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCcc--ccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107        133 GMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPE--HLASIREVTCGAAPATKSLIDKFKQKVQREDI  210 (334)
Q Consensus       133 G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~--~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~  210 (334)
                      |+++++.+.++++.+++.|+++++|+++++|+++..|++.......  .+++||.+++||+++++++.+++++.|+.   
T Consensus       162 G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~---  238 (443)
T 2y4o_A          162 GCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGI---  238 (443)
T ss_dssp             TCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTC---
T ss_pred             CCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCc---
Confidence            9999998888999999999999999999999999999875332222  35789999999999999999999999964   


Q ss_pred             ceeeccCCCCCC-C-cccccccCC--------------------CCccccCccccccccccCCccccccccCCCCceecC
Q psy12107        211 TIRQGYGMTETS-P-CTLYTRFAI--------------------PEAKLGSTGQLVMLGYLKNEEATKETVDSEGWLHTG  268 (334)
Q Consensus       211 ~i~~~YG~tE~g-~-~~~~~~~~~--------------------~~~~~~~~G~~~~~gy~~~~~~~~~~~~~~~~~~TG  268 (334)
                      ++++.||+||++ . +...+....                    .+...|..|+++.+|+      +.+.+ +++||+||
T Consensus       239 ~v~~~YG~TE~~g~~~~~~~~~~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~------t~~~~-p~~~y~TG  311 (443)
T 2y4o_A          239 DALDIYGLSEVMGPGVACECVETKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL------TKEAM-PVIRYRTR  311 (443)
T ss_dssp             EEEEEEEETTTTEEEEEEECTTTCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEES------SCSSS-CCSSEEEE
T ss_pred             CEEeccCchhhcCCeEEeccCCCCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCC------CcccC-hhheeecC
Confidence            799999999974 3 222221110                    0112344566666653      33445 68999999


Q ss_pred             ceEEEecC-CcE-----EEEccCCceEEEcCEEee
Q psy12107        269 DVAYYDED-GYF-----YIVDRTKELIKVKGNQVA  297 (334)
Q Consensus       269 D~~~~~~d-g~~-----~~~GR~~d~i~~~G~~i~  297 (334)
                      |+|+++++ |++     +++||.||+||++|++|+
T Consensus       312 Dl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~  346 (443)
T 2y4o_A          312 DLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVF  346 (443)
T ss_dssp             EEECEECCSSSSSCEECCCCEESSCCEEETTEEEC
T ss_pred             CEEEEcCCCCCCccccCccccccCCeEEECCEEEC
Confidence            99999999 987     899999999999999999

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=100.00  E-value=1.4e-39  Score=301.50  Aligned_cols=228  Identities=23%  Similarity=0.398  Sum_probs=175.2

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ....++++++|+|||||||.||||+++|+++.++.......+..... ....+++++++.+|++|.+++...++.++..|
T Consensus       178 ~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G  256 (480)
T 3t5a_A          178 KEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTD-GIPPPNSALVSWLPFYHDMGLVIGICAPILGG  256 (480)
T ss_dssp             CCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTT-TCCCTTEEEEECCCTTSTTHHHHHTHHHHHHT
T ss_pred             CCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccc-cCCCCCCeEEEeCCCcCccHHHHHHHHHHHcC
Confidence            45678999999999999999999999999998877665543311000 00123899999999999999877788999999


Q ss_pred             cEEEEcCCC----CHHHHHHHHHHcCCeEEeechHHHHHHhcC----CCCCccccccceeeeecCCCCCHHHHHHHHHHh
Q psy12107        134 MHMITIPKF----TPETYIECVVKYKPTILFVVPSLLLFLASH----PAVTPEHLASIREVTCGAAPATKSLIDKFKQKV  205 (334)
Q Consensus       134 ~~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~----~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~  205 (334)
                      +++++.+.+    ++..+++.|+++++| +..+|+++..++..    ......++++||.+++||+++++++.+++.+.|
T Consensus       257 ~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~  335 (480)
T 3t5a_A          257 YPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGSERVQAATIKRFADRF  335 (480)
T ss_dssp             CCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECCTTCCHHHHHHHHHHS
T ss_pred             CceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecCCcCCHHHHHHHHHHH
Confidence            999998753    899999999999999 88899988887653    223456789999999999999999999999998


Q ss_pred             cc---CCCceeeccCCCCCCCcccccccC-----------------------------------------------CCCc
Q psy12107        206 QR---EDITIRQGYGMTETSPCTLYTRFA-----------------------------------------------IPEA  235 (334)
Q Consensus       206 ~~---~~~~i~~~YG~tE~g~~~~~~~~~-----------------------------------------------~~~~  235 (334)
                      +.   +++.++|.||+||++.+++.....                                               ..+.
T Consensus       336 ~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~~~~~ivd~~~g~~~  415 (480)
T 3t5a_A          336 ARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIEC  415 (480)
T ss_dssp             GGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSSSEEEEEETTTTEEC
T ss_pred             hhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccCCEEEEEcCCCCcCC
Confidence            52   245799999999998765543211                                               0112


Q ss_pred             cccCcccc------ccccccCCccccccccC-----------CCCceecCceEEEecCCcEEEEcc
Q psy12107        236 KLGSTGQL------VMLGYLKNEEATKETVD-----------SEGWLHTGDVAYYDEDGYFYIVDR  284 (334)
Q Consensus       236 ~~~~~G~~------~~~gy~~~~~~~~~~~~-----------~~~~~~TGD~~~~~~dg~~~~~GR  284 (334)
                      ..+..|++      ++.||+++|+.|++.|.           .++||+|||+|+++ ||+++++||
T Consensus       416 ~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          416 PDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             CTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             CCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            23445555      78999999999999885           56799999999996 999999998

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.96  E-value=2.3e-29  Score=225.08  Aligned_cols=224  Identities=16%  Similarity=0.146  Sum_probs=155.2

Q ss_pred             CCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecch-hhhhHHHHHHHHHHHhC
Q psy12107         55 KISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPF-FHIYGFNGILNVVMMYG  133 (334)
Q Consensus        55 ~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~G  133 (334)
                      .++++++++|+|||||||.||+|+++|+++..............    ...++|++++.+|+ +|..++.. .+.++..|
T Consensus        87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~----~~~~~d~~l~~~p~g~~~~g~~~-~~~~~~~G  161 (369)
T 3hgu_A           87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHR----PGRPSGNTLAAIPTGPHIVGAIN-KERALRLG  161 (369)
T ss_dssp             TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTS----TTCCCCEEEECSCCTTCHHHHHH-HHHHHHTT
T ss_pred             cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhh----CCCCcceEEEecCCCchhhhHHH-HHHHHHcC
Confidence            45788999999999999999999999999988776544332111    25788999999999 99988877 45558888


Q ss_pred             cEEEEcCCCCHH-----------------------HHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecC
Q psy12107        134 MHMITIPKFTPE-----------------------TYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGA  190 (334)
Q Consensus       134 ~~~~~~~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G  190 (334)
                      + +++...+++.                       .+++.|+++++|+++++|+++..|++.......++++||.+++||
T Consensus       162 ~-~v~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gG  240 (369)
T 3hgu_A          162 G-MFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGG  240 (369)
T ss_dssp             S-CEECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEES
T ss_pred             C-EEECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECC
Confidence            8 6666667877                       888899999999999999999999887443345678999999999


Q ss_pred             CCCCHHHHHHHH-HHhccCCCceeeccCCCCCCCcccccccC---C---------------------CCccccCcccccc
Q psy12107        191 APATKSLIDKFK-QKVQREDITIRQGYGMTETSPCTLYTRFA---I---------------------PEAKLGSTGQLVM  245 (334)
Q Consensus       191 ~~l~~~~~~~~~-~~~~~~~~~i~~~YG~tE~g~~~~~~~~~---~---------------------~~~~~~~~G~~~~  245 (334)
                      ++++++++++++ +.|+  +++++|.||+||+++++..+...   .                     .+...|..|+++.
T Consensus       241 e~l~~~~~~~~~~~~~p--~~~v~~~YG~TE~~~~~~~~~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~v  318 (369)
T 3hgu_A          241 TELNLDEIKFIASEILP--DCEFSASYGSTSALGVSRSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIV  318 (369)
T ss_dssp             SCCCHHHHHHHHHHTCT--TSEEEEEEEEGGGTEEEEECCBCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEE
T ss_pred             ccCCHHHHHHHHHHhCC--CcEEEcccCchhhhcceeccccccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEE
Confidence            999999999999 8995  56899999999988655433211   0                     0011222333333


Q ss_pred             ccccCCccccccccCCCCceecCceEEEecC--C-------cEEEEccCCceEEEcCE
Q psy12107        246 LGYLKNEEATKETVDSEGWLHTGDVAYYDED--G-------YFYIVDRTKELIKVKGN  294 (334)
Q Consensus       246 ~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~d--g-------~~~~~GR~~d~i~~~G~  294 (334)
                      ++..+      ..+  -.+|+|||++++.+.  |       .+..++|.++..++.|.
T Consensus       319 t~l~~------~~~--l~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          319 THLSP------WAF--YPRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV  368 (369)
T ss_dssp             EEEET------TEE--EEEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred             EEcCc------ccc--cccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence            32211      111  236999999998654  2       25567788888887774

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.51  E-value=4.2e-08  Score=90.79  Aligned_cols=34  Identities=15%  Similarity=0.348  Sum_probs=31.2

Q ss_pred             ceecCceEEEec----CCcEEEEccCCceEEEcCEEee
Q psy12107        264 WLHTGDVAYYDE----DGYFYIVDRTKELIKVKGNQVA  297 (334)
Q Consensus       264 ~~~TGD~~~~~~----dg~~~~~GR~~d~i~~~G~~i~  297 (334)
                      .|++||++++..    ..++.|+||.+|++++.|++++
T Consensus       399 RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~  436 (581)
T 4eql_A          399 RMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTN  436 (581)
T ss_dssp             SEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEE
T ss_pred             eEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECC
Confidence            499999999976    4679999999999999999999

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.31  E-value=2.2e-07  Score=86.12  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=31.0

Q ss_pred             ceecCceEEEec----CCcEEEEccCCceEEEcCEEee
Q psy12107        264 WLHTGDVAYYDE----DGYFYIVDRTKELIKVKGNQVA  297 (334)
Q Consensus       264 ~~~TGD~~~~~~----dg~~~~~GR~~d~i~~~G~~i~  297 (334)
                      .|++||+++++.    ..++.|+||.+|++++.|++|+
T Consensus       411 RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~  448 (609)
T 4b2g_A          411 RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTD  448 (609)
T ss_dssp             SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBC
T ss_pred             heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCC
Confidence            399999999974    4689999999999999999999

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.23  E-value=2.5e-07  Score=85.46  Aligned_cols=34  Identities=12%  Similarity=0.075  Sum_probs=30.7

Q ss_pred             ceecCceEEEecC----CcEEEEccCCceEEEcCEEee
Q psy12107        264 WLHTGDVAYYDED----GYFYIVDRTKELIKVKGNQVA  297 (334)
Q Consensus       264 ~~~TGD~~~~~~d----g~~~~~GR~~d~i~~~G~~i~  297 (334)
                      .|++||++++..-    .++.|+||.++++++.|++++
T Consensus       406 RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~  443 (581)
T 4epl_A          406 RYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNT  443 (581)
T ss_dssp             SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBC
T ss_pred             eEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECC
Confidence            4999999998643    579999999999999999999

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=97.97  E-value=1.4e-06  Score=62.73  Aligned_cols=15  Identities=20%  Similarity=0.450  Sum_probs=14.2

Q ss_pred             ccCCceEEEcCEEee
Q psy12107        283 DRTKELIKVKGNQVA  297 (334)
Q Consensus       283 GR~~d~i~~~G~~i~  297 (334)
                      .|.||+|+++|.|||
T Consensus         1 srADDmIiv~G~nv~   15 (109)
T 3lax_A            1 SNADDMIILKGVNIF   15 (109)
T ss_dssp             CGGGSCEEETTEEEC
T ss_pred             CCcCEEEEECCEEEC
Confidence            489999999999999

>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}

Probab=83.14  E-value=12  Score=29.64  Aligned_cols=93  Identities=16%  Similarity=0.178  Sum_probs=57.5

Q ss_pred             CCceEEEecch-hhhhHHHHHHHHHHHhCcEEEEcC-CCCHHHHHHHHHHcCCeEEee--ch----HH--HHHHhcCCCC
Q psy12107        106 SQETVLSVLPF-FHIYGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKPTILFV--VP----SL--LLFLASHPAV  175 (334)
Q Consensus       106 ~~~~~l~~~p~-~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~t~l~~--~p----~~--l~~l~~~~~~  175 (334)
                      ...+++.+.+- .|..|........-..|..++... ...++.+++.+++++++++..  ..    ++  +..+.+..+.
T Consensus        92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~  171 (215)
T 3ezx_A           92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNE  171 (215)
T ss_dssp             CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHH
Confidence            44555655554 788888775555557888887765 468999999999999997777  22    11  2222221111


Q ss_pred             CccccccceeeeecCCCCCHHHHHH
Q psy12107        176 TPEHLASIREVTCGAAPATKSLIDK  200 (334)
Q Consensus       176 ~~~~~~~lr~v~~~G~~l~~~~~~~  200 (334)
                      ... ...++ +++||.+++++..+.
T Consensus       172 ~~~-~~~v~-v~vGG~~~~~~~a~~  194 (215)
T 3ezx_A          172 EKL-RDSVK-CMFGGAPVSDKWIEE  194 (215)
T ss_dssp             TTC-GGGSE-EEEESSSCCHHHHHH
T ss_pred             cCC-CCCCE-EEEECCCCCHHHHHH
Confidence            110 01333 688999999775443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	334
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	1e-58
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	2e-46
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	8e-41
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	5e-35
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	3e-24
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	2e-20
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	3e-19

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  197 bits (502), Expect = 1e-58
 Identities = 53/299 (17%), Positives = 102/299 (34%), Gaps = 46/299 (15%)

Query: 40  FKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNH 99
           ++ L+    P+ Q   ++  D   + Y+SG+TG PKGV  +     V             
Sbjct: 233 WRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF--- 289

Query: 100 IPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK----FTPETYIECVVKYK 155
                   +          + G + +L   +  G   +         TP    + V K++
Sbjct: 290 ---DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQ 346

Query: 156 PTILFVVPSLLLFLASHP--AVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIR 213
             IL+  P+ +  L +    A+     +S+R +     P      + + +K+ +E   + 
Sbjct: 347 VNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVV 406

Query: 214 QGYGMTETSPCTLYTRFAIPEAKLGSTGQL------------------------------ 243
             +  TET    +       E K GS  +                               
Sbjct: 407 DTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSW 466

Query: 244 --VMLGYLKNEEATKETVDS--EGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
                    + E  ++T  S  +    +GD A  DEDGY++I  R  +++ V G+++  
Sbjct: 467 PGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGT 525

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  164 bits (416), Expect = 2e-46
 Identities = 54/299 (18%), Positives = 101/299 (33%), Gaps = 49/299 (16%)

Query: 43  LVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPT 102
                   +    +   D   L Y+SG+TG PKGV+ S     +     +      H   
Sbjct: 223 EKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTH--- 279

Query: 103 SDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFT----PETYIECVVKYKPTI 158
               ++   +      I G   ++   ++YG   +             Y + + ++K T 
Sbjct: 280 ---QEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQ 336

Query: 159 LFVVPSLLLFL--ASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGY 216
            +V P+ L  L  A    +    L S+R +     P    + + + +K+ + +I I   Y
Sbjct: 337 FYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTY 396

Query: 217 GMTETSPCTLYTRF-AIPEAKLGSTGQLV------------------------------- 244
             TE+    +      +   K GS                                    
Sbjct: 397 WQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAW 456

Query: 245 ---MLGYLKNEEATKETV--DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
                   KN +   +T      G+  TGD A  D+DGY +I+ R  +++ V G++++ 
Sbjct: 457 PSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLST 515

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  147 bits (372), Expect = 8e-41
 Identities = 80/339 (23%), Positives = 133/339 (39%), Gaps = 55/339 (16%)

Query: 1   MCNIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPND 60
           +   P LL +   I   L   +  +V+  +  +    +       + P            
Sbjct: 116 LLFDPNLLPLVEAIRGELKTVQHFVVMDEKAPEGYLAYEEALGEEADPVRVP-----ERA 170

Query: 61  LAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIY 120
              + Y++GTTG+PKGV  SH    ++       D         + ++ VL V+P FH+ 
Sbjct: 171 ACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTAL-----SEKDVVLPVVPMFHVN 225

Query: 121 GFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHL 180
            +       ++    ++  P+  P + +E       T    VP++ L LA +   T   L
Sbjct: 226 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRL 285

Query: 181 ASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRF---------A 231
            ++R +  G + A +SLI +F    +R  + +RQGYG+TETSP  +              
Sbjct: 286 KTLRRLVVGGSAAPRSLIARF----ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEE 341

Query: 232 IPEAKLGSTGQ--------------------------------LVMLGYLKNEEATKETV 259
                   TG                                  +  GY  NEEAT+  +
Sbjct: 342 EKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSAL 401

Query: 260 DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
             +G+  TGD+A +DE+GY  I DR K+LIK  G  ++ 
Sbjct: 402 TPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISS 440

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  131 bits (331), Expect = 5e-35
 Identities = 89/321 (27%), Positives = 142/321 (44%), Gaps = 42/321 (13%)

Query: 13  KIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISP------NDLAMLPY 66
            +   LP  +  I++  + D       +  + +  PP F      P        +A++  
Sbjct: 135 NVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMN 194

Query: 67  SSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGIL 126
           SSG+TG+PKGV L H    V           + I  +    +T +  +  FH        
Sbjct: 195 SSGSTGLPKGVALPHRTACVR-----FSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTT 249

Query: 127 NVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREV 186
              ++ G  ++ + +F  E ++  +  YK     +VP+L  F A    +    L+++ E+
Sbjct: 250 LGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEI 309

Query: 187 TCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTR----------FAIP--- 233
             G AP +K + +   ++       IRQGYG+TET+   L T             +P   
Sbjct: 310 ASGGAPLSKEVGEAVAKR--FHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFE 367

Query: 234 ----------EAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDG 277
                        +   G+L      +M GY+ N EAT   +D +GWLH+GD+AY+DED 
Sbjct: 368 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 427

Query: 278 YFYIVDRTKELIKVKGNQVAP 298
           +F+IVDR K LIK KG QVAP
Sbjct: 428 HFFIVDRLKSLIKYKGYQVAP 448

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  100 bits (250), Expect = 3e-24
 Identities = 61/281 (21%), Positives = 105/281 (37%), Gaps = 34/281 (12%)

Query: 46  SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDT 105
           S  P  + P+  P   A + Y+SGTTG+PK   +        +        + H      
Sbjct: 140 SYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGR---- 195

Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
               VL ++P +H+ GF  +L   +      + + +F P   ++ V + + T LF  P+ 
Sbjct: 196 -HNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTH 254

Query: 166 LLFLASHPA--VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSP 223
           L  LA+  A   +   L S+R VT   A    ++++   Q +  E + I        +  
Sbjct: 255 LDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNSLY 314

Query: 224 CTLYTRFAIPEAKLGSTGQLV--------------------------MLGYLKNEEATKE 257
                          S  ++V                           +GYL   +AT E
Sbjct: 315 MRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAE 374

Query: 258 TVDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
            +  +GW  T DVA +  +G   I+ R  ++I   G  + P
Sbjct: 375 KLQ-DGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHP 414

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score = 89.2 bits (220), Expect = 2e-20
 Identities = 57/290 (19%), Positives = 100/290 (34%), Gaps = 54/290 (18%)

Query: 46  SQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDT 105
            +  +  +P     DLA + Y+SGTTG PKG  L H   +       +   V        
Sbjct: 154 REGTNLHVP-SKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEK----- 207

Query: 106 SQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSL 165
                   +  F    F+  +  + M  +   ++     +T  + V   +      +  +
Sbjct: 208 ------DRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVI 261

Query: 166 LLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCT 225
            L       + PE + SI+ +    +  + SL++K+     +E +T    YG TET+ C 
Sbjct: 262 TLPPTYVVHLDPERILSIQTLITAGSATSPSLVNKW-----KEKVTYINAYGPTETTICA 316

Query: 226 LYTR-------------------------FAIPEAKLGSTGQL------VMLGYLKNEEA 254
                                          +    +G  G+L      +  GY K  E 
Sbjct: 317 TTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPEL 376

Query: 255 TKET------VDSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVAP 298
           T +       V  E    TGD A +  DG    + R    +K++G++V  
Sbjct: 377 TSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVEL 426

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score = 85.8 bits (211), Expect = 3e-19
 Identities = 60/319 (18%), Positives = 113/319 (35%), Gaps = 40/319 (12%)

Query: 7   LLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPY 66
              +  ++ + LP  +  IV G   +       F  L        +LP++  +D+A L  
Sbjct: 137 YRSLARQVQSKLPTLKNIIVAGEAEE-------FLPLEDLHTEPVKLPEVKSSDVAFLQL 189

Query: 67  SSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGIL 126
           S G+TG+ K +  +H++   +L++ V    ++H      +           +    +  +
Sbjct: 190 SGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALP------MAHNYPLSSPGV 243

Query: 127 NVVMMYGMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREV 186
             V+  G  ++  P  +P+     + + K TI  +VP L +      +   + L+S++ +
Sbjct: 244 LGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVL 303

Query: 187 TCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP------------- 233
             G A  +     + K         +                   I              
Sbjct: 304 QVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDES 363

Query: 234 --------EAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYF 279
                   + K G TG L       + GY K EE    +   +G+  TGD+     DGY 
Sbjct: 364 RVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYI 423

Query: 280 YIVDRTKELIKVKGNQVAP 298
            +  R K+ I   G +VA 
Sbjct: 424 VVEGRAKDQINRGGEKVAA 442

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	334
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	82.81
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	81.08

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=2.4e-51  Score=389.80  Aligned_cols=309  Identities=20%  Similarity=0.305  Sum_probs=244.4

Q ss_pred             hCCCCceEEEEcCCCCC----CCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhc
Q psy12107         17 TLPNFRGTIVVGGEHDK----SKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCV   92 (334)
Q Consensus        17 ~~~~~~~ii~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~   92 (334)
                      .++.+++++++......    ......+.+..........+..++++|+++|+|||||||.||||+++|++++.+.....
T Consensus       206 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dd~a~IlyTSGTTG~PKgV~~sh~~~l~~~~~~~  285 (643)
T d1pg4a_         206 NVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTF  285 (643)
T ss_dssp             TCCSCCEEEEECSSCCCCCCCBTTEEEHHHHHTTSCSCCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHH
T ss_pred             ccccceEEEEeccCCcccccccccchhhhhhhcccCcccCCCCCCCCCeEEEEeCCCcccCCCEEEEccHHHHHHHHHHH
Confidence            45777888887754221    11233445555433333444567889999999999999999999999999765543322


Q ss_pred             cCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC----CCHHHHHHHHHHcCCeEEeechHHHHH
Q psy12107         93 HPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK----FTPETYIECVVKYKPTILFVVPSLLLF  168 (334)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~l~~  168 (334)
                      ....      +..++|++++..|++|++++...++.++..|+++++.+.    +++..+++.|+++++|+++++|++++.
T Consensus       286 ~~~~------~~~~~d~~~~~~p~~~~~g~~~~l~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~l~~  359 (643)
T d1pg4a_         286 KYVF------DYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRA  359 (643)
T ss_dssp             HHHT------TCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHH
T ss_pred             HHhh------CCCCCCEEEEeCChHHHHHHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHHCCcEEEehHHHHHH
Confidence            2211      267899999999999999988777889999999998753    488999999999999999999999999


Q ss_pred             HhcCCC--CCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCCCCccccCc------
Q psy12107        169 LASHPA--VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIPEAKLGST------  240 (334)
Q Consensus       169 l~~~~~--~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~------  240 (334)
                      |++...  ....++++||.++++|+++++++.+++.+.++..++++++.||+||+|++++.......+.+.+++      
T Consensus       360 l~~~~~~~~~~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~TE~g~~~~~~~~~~~~~~~gs~G~p~~g  439 (643)
T d1pg4a_         360 LMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFG  439 (643)
T ss_dssp             HHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTT
T ss_pred             HHhCcchhccccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechhhccceEEecCCCccCCCCCccccccCC
Confidence            987654  245678999999999999999999999999976567899999999998765543222111122333      


Q ss_pred             ------------------ccc--------ccccccCCcccccccc--CCCCceecCceEEEecCCcEEEEccCCceEEEc
Q psy12107        241 ------------------GQL--------VMLGYLKNEEATKETV--DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVK  292 (334)
Q Consensus       241 ------------------G~~--------~~~gy~~~~~~~~~~~--~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~  292 (334)
                                        |++        ++.||+++++.+.+.+  ..+|||+|||+|++|+||+++++||+||+||++
T Consensus       440 ~~v~ivd~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~l~i~GR~dd~ik~~  519 (643)
T d1pg4a_         440 VQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVS  519 (643)
T ss_dssp             CCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEET
T ss_pred             CEEEEECCCCCCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECCCceEEEecccccEEEEC
Confidence                              333        4568999988777654  347899999999999999999999999999999


Q ss_pred             CEEee------------------------------------------------------------eeeeccCcEEEeecC
Q psy12107        293 GNQVA------------------------------------------------------------PYKKLAGGVKFLETI  312 (334)
Q Consensus       293 G~~i~------------------------------------------------------------~~~~~~~~i~~v~~l  312 (334)
                      |++|+                                                            ++++|.. |+++++|
T Consensus       520 G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~i~~~~~~~L~~~~vP~~-i~~v~~l  598 (643)
T d1pg4a_         520 GHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDV-LHWTDSL  598 (643)
T ss_dssp             TEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSE-EEECSCC
T ss_pred             CEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCcccCccE-EEEECCC
Confidence            99999                                                            6677777 9999999


Q ss_pred             CCCCCchhhHHHHhhhhcCC
Q psy12107        313 PRNPAGKVLRNELKVFGTNP  332 (334)
Q Consensus       313 P~t~~GKi~r~~l~~~~~~~  332 (334)
                      |+|++|||+|++||+++.+.
T Consensus       599 P~T~sGKi~R~~Lr~~~~~~  618 (643)
T d1pg4a_         599 PKTRSGKIMRRILRKIAAGD  618 (643)
T ss_dssp             CBCTTSCBCHHHHHHHHHTC
T ss_pred             CCCCCcCccHHHHHHHhcCC
Confidence            99999999999999987653

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.1e-50  Score=380.70  Aligned_cols=317  Identities=20%  Similarity=0.295  Sum_probs=243.9

Q ss_pred             hHHHHHHhhhCCCCceEEEEcCCCCCC-----CCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcch
Q psy12107          8 LEVGTKIGATLPNFRGTIVVGGEHDKS-----KNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHN   82 (334)
Q Consensus         8 ~~~~~~~~~~~~~~~~ii~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~   82 (334)
                      ...+.......+.++....+.......     .....+...........+..+.+++|+++|+|||||||.||||+++|+
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~h~  262 (640)
T d1ry2a_         183 KRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTA  262 (640)
T ss_dssp             HHHHHHHTTSCTTCCEEEEECSSCCSSCCCCSSSEEEHHHHHTTSCSCCCCCCEETTSCCEEEEECCSSSSCEEEEECSH
T ss_pred             HHHHHhhhhhhcccceeeeecccccccccccccccccccccccccccccccCCcccccCCEEEECCCCCCCCcceeeccc
Confidence            445555556666666666655432210     011122222222222233345678999999999999999999999999


Q ss_pred             HHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCC----CCHHHHHHHHHHcCCeE
Q psy12107         83 NCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPK----FTPETYIECVVKYKPTI  158 (334)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~----~~~~~~~~~i~~~~~t~  158 (334)
                      ++..+.........      ...++|++++.+|++|+++....++.++..|+++++.+.    +++..+++.|+++++|+
T Consensus       263 ~~~~~~~~~~~~~~------~~~~~d~~l~~~pl~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~vt~  336 (640)
T d1ry2a_         263 GYLLGALLTMRYTF------DTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQ  336 (640)
T ss_dssp             HHHHHHHHHHHHHS------CCCSSCEEEECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSE
T ss_pred             cHHHHHHHHHHhhc------CCCcccceeeccchhhhhhHHHHHHHHHHhCCEEEEecCCCCCCCHHHHHHHHHHhCccE
Confidence            98776544333211      267899999999999999988778889999999888764    38899999999999999


Q ss_pred             EeechHHHHHHhcCCCC--CccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC-CCc
Q psy12107        159 LFVVPSLLLFLASHPAV--TPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI-PEA  235 (334)
Q Consensus       159 l~~~p~~l~~l~~~~~~--~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~-~~~  235 (334)
                      ++++|++++.|.+....  ...++++||.+++||+++++++.+++.+.+|.....+++.||+||++.......... .+.
T Consensus       337 ~~~~P~~~~~l~~~~~~~~~~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~te~~~~~~~~~~~~~~~~  416 (640)
T d1ry2a_         337 FYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPM  416 (640)
T ss_dssp             EEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTTCCCC
T ss_pred             EEcChHHHHHHHhccccccccCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeecccccccccccccCCCcCCC
Confidence            99999999999876542  456789999999999999999999999999865567999999999987554322211 111


Q ss_pred             cccCccc----------------------------------cccccccCCccccccccC--CCCceecCceEEEecCCcE
Q psy12107        236 KLGSTGQ----------------------------------LVMLGYLKNEEATKETVD--SEGWLHTGDVAYYDEDGYF  279 (334)
Q Consensus       236 ~~~~~G~----------------------------------~~~~gy~~~~~~~~~~~~--~~~~~~TGD~~~~~~dg~~  279 (334)
                      .++++|.                                  .++.|||++++.+.+.+.  .+|||+|||+|++|+||++
T Consensus       417 ~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~gw~~TGDlg~~d~dG~l  496 (640)
T d1ry2a_         417 KPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYI  496 (640)
T ss_dssp             CTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCE
T ss_pred             CCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCCCeEEcCCceeECCCCCE
Confidence            2222222                                  267899999999988773  4599999999999999999


Q ss_pred             EEEccCCceEEEcCEEee--------------------------------------------------------------
Q psy12107        280 YIVDRTKELIKVKGNQVA--------------------------------------------------------------  297 (334)
Q Consensus       280 ~~~GR~~d~i~~~G~~i~--------------------------------------------------------------  297 (334)
                      +++||.||+||++|++|+                                                              
T Consensus       497 ~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~~  576 (640)
T d1ry2a_         497 WILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTV  576 (640)
T ss_dssp             EECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHH
T ss_pred             EEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCCccccchHHHHHHHHHHHHHH
Confidence            999999999999999999                                                              


Q ss_pred             -----eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 -----PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 -----~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                           ++++|+. |+++++||+|++|||+|++||+++.+
T Consensus       577 ~~~L~~~~~P~~-i~~v~~lP~T~sGKi~R~~Lr~~~~~  614 (640)
T d1ry2a_         577 RKDIGPFAAPKL-IILVDDLPKTRSGKIMRRILRKILAG  614 (640)
T ss_dssp             HHHTCTTTSCSE-EEECSCCCBCTTSCBCHHHHHHSCC-
T ss_pred             HhhCCCCCCceE-EEEeCCCCCCCCcCccHHHHHHHHhC
Confidence                 4456666 99999999999999999999999865

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=5.4e-48  Score=360.55  Aligned_cols=324  Identities=32%  Similarity=0.524  Sum_probs=245.3

Q ss_pred             CcchhhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhc-------CCCCCCCCCCCCCCCEEEEecCCCCCCCch
Q psy12107          3 NIPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVT-------SQPPDFQLPKISPNDLAMLPYSSGTTGVPK   75 (334)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~-------~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK   75 (334)
                      .+.++++.+.++...+|..+.+++++...+ ......+.+...       .+....+.....++++++|+|||||||.||
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK  203 (541)
T d1lcia_         125 VSKKGLQKILNVQKKLPIIQKIIIMDSKTD-YQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPK  203 (541)
T ss_dssp             ECGGGHHHHHHHHHHCTTCCEEEETTCSSC-BTTBEEHHHHHHHHSCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCC
T ss_pred             eeccccccchhccccccccceeeeecCCcc-ccccchhhhhhhhhccccccccccCccccCCCCceEEEEeecccccccc
Confidence            456778889999999999999999876432 223344444431       111122234456789999999999999999


Q ss_pred             hhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcCCCCHHHHHHHHHHcC
Q psy12107         76 GVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIPKFTPETYIECVVKYK  155 (334)
Q Consensus        76 ~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~  155 (334)
                      +|+++|+++..............    .....+++++.+|++|..+... .+..+..++..+.....+.......+..++
T Consensus       204 gV~~s~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (541)
T d1lcia_         204 GVALPHRTACVRFSHARDPIFGN----QIIPDTAILSVVPFHHGFGMFT-TLGYLICGFRVVLMYRFEEELFLRSLQDYK  278 (541)
T ss_dssp             EEEEEHHHHHHHHHHHTCTTTSC----CCCTTCEEEECSCTTSHHHHHH-HHHHHHHTCEEEECSSCCHHHHHHHHHHTT
T ss_pred             ccccccchhhhhhhhhhhhcccc----cccccccccccccccccccccc-cccccccccccccccccccchhHHHHhhhh
Confidence            99999999987666554433211    2567899999999999998877 567777888888888889999999999999


Q ss_pred             CeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCCC--
Q psy12107        156 PTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAIP--  233 (334)
Q Consensus       156 ~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~--  233 (334)
                      +|.++++|.++..+.+.......++++++.+++||++++++..+++.+.++  ...+++.||+||++..++.......  
T Consensus       279 ~t~~~~~p~~~~~~~~~~~~~~~~~~~l~~v~~gG~~~~~~~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~  356 (541)
T d1lcia_         279 IQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRFH--LPGIRQGYGLTETTSAILITPEGDDKP  356 (541)
T ss_dssp             CSEEECCHHHHHHHHHCSCGGGSCCTTCCEEECTTCCCCHHHHHHHHHHTT--CSCCBCEECCGGGSSCSEECCCC---C
T ss_pred             ccccccCccccccccccccccccccccceEEEecccccccccccccccccC--CceeeecCCccccCceEEecCcccCCC
Confidence            999999999999999888777788899999999999999999999999997  3468999999999876665433221  


Q ss_pred             ---------------------CccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEEEccCC
Q psy12107        234 ---------------------EAKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYIVDRTK  286 (334)
Q Consensus       234 ---------------------~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~~GR~~  286 (334)
                                           ....+..|++      ++.||+++++.+...+..++||+|||+|++++||.+++.||.+
T Consensus       357 ~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~~~~~G~~~~~GR~~  436 (541)
T d1lcia_         357 GAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLK  436 (541)
T ss_dssp             CCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC----
T ss_pred             CccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeEEcCCeEEEEeeeec
Confidence                                 1112334444      7889999999888888889999999999999999999999999


Q ss_pred             ceEEEcCEEee---------------------------------------------------------eeeeccCcEEEe
Q psy12107        287 ELIKVKGNQVA---------------------------------------------------------PYKKLAGGVKFL  309 (334)
Q Consensus       287 d~i~~~G~~i~---------------------------------------------------------~~~~~~~~i~~v  309 (334)
                      |+||++|++|+                                                         +++.++..|+++
T Consensus       437 d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~~l~~~~~~p~~i~~v  516 (541)
T d1lcia_         437 SLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFV  516 (541)
T ss_dssp             -CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHHHSCGGGSCTTEEEEE
T ss_pred             CEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHhCCccccCCcEEEEe
Confidence            99999999999                                                         454433349999


Q ss_pred             ecCCCCCCchhhHHHHhhhhcCCCC
Q psy12107        310 ETIPRNPAGKVLRNELKVFGTNPKK  334 (334)
Q Consensus       310 ~~lP~t~~GKi~r~~l~~~~~~~~~  334 (334)
                      ++||+|++|||+|++||+++.+++|
T Consensus       517 ~~lP~t~~GKi~r~~l~~~~~~~~~  541 (541)
T d1lcia_         517 DEVPKGLTGKLDARKIREILIKAKK  541 (541)
T ss_dssp             SSCCC-----CCHHHHHHHHHHHTC
T ss_pred             CCCCcCCCcCccHHHHHHHHHHhCC
Confidence            9999999999999999999877664

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.3e-46  Score=350.77  Aligned_cols=312  Identities=29%  Similarity=0.441  Sum_probs=228.2

Q ss_pred             cchhhHHHHHHhhhCCCCceEEEEcCCCCCCCCccchhhhhcCCCCCCCCCCCCCCCEEEEecCCCCCCCchhhhhcchH
Q psy12107          4 IPQLLEVGTKIGATLPNFRGTIVVGGEHDKSKNIFGFKQLVTSQPPDFQLPKISPNDLAMLPYSSGTTGVPKGVKLSHNN   83 (334)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~   83 (334)
                      +.+......++...++.++.+++......   ......+....  .........++++++++|||||||.||+|+++|.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGTTG~PKgv~~s~~~  193 (534)
T d1v25a_         119 DPNLLPLVEAIRGELKTVQHFVVMDEKAP---EGYLAYEEALG--EEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRA  193 (534)
T ss_dssp             CGGGHHHHHHHGGGCSSCCEEEESSSCCC---TTCEEHHHHCC--SCCCCCCCCTTSEEEEEEECSSSSSCEEEEEEHHH
T ss_pred             cchhhhhHHHHhhcccccceeEEeecccc---ccccccccccc--ccccccccccCCcEEEEEecCCCCCccccccccch
Confidence            45666777777788888888777654321   11111111111  11112356688999999999999999999999999


Q ss_pred             HHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEE-cCCCCHHHHHHHHHHcCCeEEeec
Q psy12107         84 CAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMIT-IPKFTPETYIECVVKYKPTILFVV  162 (334)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~-~~~~~~~~~~~~i~~~~~t~l~~~  162 (334)
                      +..+..........     .....+++++.+|++|..++...+ ..+..|+++++ .+.+++..+..+++++++|++.++
T Consensus       194 l~~~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~~~~~~~-~~~~~g~~~v~~~~~~~~~~~~~~~~~~~vt~~~~~  267 (534)
T d1v25a_         194 LVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHVNAWCLPY-AATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGV  267 (534)
T ss_dssp             HHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSHHHHTHHH-HHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEEC
T ss_pred             hhhhhhhhhhhccc-----ccccccccccccchhhhccccccc-eeeeecceeeeccccccccccchhhhhccccccccC
Confidence            98665443333211     256889999999999999988854 45555555555 456899999999999999999999


Q ss_pred             hHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCceeeccCCCCCCCcccccccCC----------
Q psy12107        163 PSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITIRQGYGMTETSPCTLYTRFAI----------  232 (334)
Q Consensus       163 p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~----------  232 (334)
                      |+++..++........++++||.+++||++++++..+++++. +   .++++.||+||++.+++......          
T Consensus       268 p~~~~~~~~~~~~~~~~~~~lr~~~~gG~~~~~~~~~~~~~~-~---~~i~~~yG~te~~~~~~~~~~~~~~~~~~~~~~  343 (534)
T d1v25a_         268 PTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERM-G---VEVRQGYGLTETSPVVVQNFVKSHLESLSEEEK  343 (534)
T ss_dssp             HHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHHHHT-T---CEEEEEEECGGGSSEEEECCCCGGGTTSCHHHH
T ss_pred             chhhhhhhhhhccccccccceeEEEEecCCCCHHHHHHHHHh-C---CeeeeeccccccccceeecccCccccccCcccc
Confidence            999999987665556788999999999999999999998864 3   37999999999997654321110          


Q ss_pred             -------------C----------C--ccccCcccc------ccccccCCccccccccCCCCceecCceEEEecCCcEEE
Q psy12107        233 -------------P----------E--AKLGSTGQL------VMLGYLKNEEATKETVDSEGWLHTGDVAYYDEDGYFYI  281 (334)
Q Consensus       233 -------------~----------~--~~~~~~G~~------~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~~~  281 (334)
                                   .          +  ...+..|++      ++.||+++++.+...+..+|||+|||+|++++||.+++
T Consensus       344 ~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~dg~~~TGDlg~~~~~G~l~~  423 (534)
T d1v25a_         344 LTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEI  423 (534)
T ss_dssp             HHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEE
T ss_pred             ccccccceeccCCcEEEEECCCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhcccCCCCccCceeEECCCccEEE
Confidence                         0          0  011223444      78899999999999999999999999999999999999


Q ss_pred             EccCCceEEEcCEEee---------------------------------------------------------eeeeccC
Q psy12107        282 VDRTKELIKVKGNQVA---------------------------------------------------------PYKKLAG  304 (334)
Q Consensus       282 ~GR~~d~i~~~G~~i~---------------------------------------------------------~~~~~~~  304 (334)
                      +||.+|+||++|++|+                                                         ++++|..
T Consensus       424 ~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~~~~~~~~~~~~~~l~~~~~P~~  503 (534)
T d1v25a_         424 KDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDA  503 (534)
T ss_dssp             EEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-------------------CCCTTTSCSB
T ss_pred             ecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCCCHHHHHHHHHHhcCCcCCCccE
Confidence            9999999999999999                                                         5566667


Q ss_pred             cEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        305 GVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       305 ~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                       |.++++||+|++|||+|++||+++++
T Consensus       504 -i~~~~~lP~t~~GKi~R~~lr~~~~~  529 (534)
T d1v25a_         504 -YVFAEEIPRTSAGKFLKRALREQYKN  529 (534)
T ss_dssp             -C--------------CCTTHHHHSTT
T ss_pred             -EEEECCCCCCCCccccHHHHHHHHHh
Confidence             99999999999999999999999875

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=3.4e-41  Score=313.82  Aligned_cols=267  Identities=26%  Similarity=0.395  Sum_probs=222.7

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHH-HHHHh
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILN-VVMMY  132 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~-~~~~~  132 (334)
                      +..+++|+++|+|||||||.||+|++||+++..+........       ....++++++..|++|.+++...+. ..+..
T Consensus       177 ~~~~~~d~a~i~~TSGTTG~PKgV~~s~~~~~~~~~~~~~~~-------~~~~~d~~l~~~~~~~~~~l~~~~~~~~~~~  249 (536)
T d1mdba_         177 PEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-------WLDHSTVYLAALPMAHNYPLSSPGVLGVLYA  249 (536)
T ss_dssp             CCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-------TCCTTCEEEECSCTTSHHHHHSSHHHHHHHT
T ss_pred             CccCccchHHhhhcccccccceeccccccccccccccccccc-------ccccccccccccccccccceeeccccccccc
Confidence            467789999999999999999999999999988877665544       2678999999999999998754334 44455


Q ss_pred             CcEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCCce
Q psy12107        133 GMHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDITI  212 (334)
Q Consensus       133 G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~i  212 (334)
                      |.+++..+.+++..++..+++++++.+..+|..+..+..........+++++.+++||++++++..+++.+.++.   ..
T Consensus       250 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~---~~  326 (536)
T d1mdba_         250 GGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGC---TL  326 (536)
T ss_dssp             TCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHTCS---EE
T ss_pred             cccccccCCCCHHHHHHHHhhhccccccccchhhhhhhhhccccccccCcceeEEEeccccccccccchhhccCc---ee
Confidence            788888888999999999999999999999999998877655556678899999999999999999999999975   67


Q ss_pred             eeccCCCCCCCcccccccC------------------------CCCccccCcccc------ccccccCCccccccccCCC
Q psy12107        213 RQGYGMTETSPCTLYTRFA------------------------IPEAKLGSTGQL------VMLGYLKNEEATKETVDSE  262 (334)
Q Consensus       213 ~~~YG~tE~g~~~~~~~~~------------------------~~~~~~~~~G~~------~~~gy~~~~~~~~~~~~~~  262 (334)
                      ...|+.+|.+.........                        ..+...+..|++      +++||++++..+...+..+
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~  406 (536)
T d1mdba_         327 QQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTED  406 (536)
T ss_dssp             EEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTT
T ss_pred             eeccccccccccccccccccccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCcccccccccccccccccccc
Confidence            7888888866433321110                        012233444443      7899999999999999899


Q ss_pred             CceecCceEEEecCCcEEEEccCCceEEEcCEEee---------------------------------------------
Q psy12107        263 GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA---------------------------------------------  297 (334)
Q Consensus       263 ~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~---------------------------------------------  297 (334)
                      +||+|||++++++||+++++||.||+||++|++|+                                             
T Consensus       407 ~~~~tGD~~~~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~~~~~~  486 (536)
T d1mdba_         407 GFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAA  486 (536)
T ss_dssp             SCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSCCCHH
T ss_pred             CccccCccccccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCCCCCHH
Confidence            99999999999999999999999999999999999                                             


Q ss_pred             ------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhcC
Q psy12107        298 ------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGTN  331 (334)
Q Consensus       298 ------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~~  331 (334)
                                  ++++|.. |+++++||+|++|||+|++|++.+++
T Consensus       487 ~l~~~l~~~~l~~~~~P~~-i~~v~~lP~t~~GKi~r~~L~~~~~~  531 (536)
T d1mdba_         487 ELKAFLRERGLAAYKIPDR-VEFVESFPQTGVGKVSKKALREAISE  531 (536)
T ss_dssp             HHHHHHHHTTCCGGGSCSE-EEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcCcCccE-EEEECCCCcCCCcCccHHHHHHHHHH
Confidence                        5556666 99999999999999999999998753

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=100.00  E-value=4.8e-40  Score=303.06  Aligned_cols=267  Identities=26%  Similarity=0.428  Sum_probs=219.5

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      ...+++++++++|||||||.||+|+++|+++..+..........     .....++.+..+|++|..+.....+.+...+
T Consensus       148 ~~~~~~~~a~i~~TSGTTG~pK~v~~s~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  222 (503)
T d3cw9a1         148 PQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGL-----RHGRHNVVLGLMPLYHVVGFFAVLVAALALD  222 (503)
T ss_dssp             CCCCTTSEEEEEEECCSSSSCEEEEEEGGGHHHHHHHHHHTSCC-----CSSTTCEEEECSCTTSHHHHHTTHHHHHHTT
T ss_pred             ccchhhhhhhhcccccccccccccccccchhhhhhhhccccccc-----cccccccccccCccccccccccccccccccc
Confidence            45678999999999999999999999999998887665544321     2456788999999988888777778888888


Q ss_pred             cEEEEcCCCCHHHHHHHHHHcCCeEEeechHHHHHHhcCCC--CCccccccceeeeecCCCCCHHHHHHHHHHhccCCCc
Q psy12107        134 MHMITIPKFTPETYIECVVKYKPTILFVVPSLLLFLASHPA--VTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDIT  211 (334)
Q Consensus       134 ~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~--~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~~  211 (334)
                      ..++..+.+++..+...+..++++.+..+|+.+..+.....  .....+++||.+++||++++++..+.+.+.++.   .
T Consensus       223 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~---~  299 (503)
T d3cw9a1         223 GTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHLPG---E  299 (503)
T ss_dssp             CEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHHHTCTTCCCTTCCEEEECSSCCCHHHHHHHHHHCCS---E
T ss_pred             cccccccccChHHhhhhhhhceeeccccccccccccccccccccccccccceEEEEeccccccccccccccccccc---c
Confidence            89999999999999999999999999999998877654322  234567889999999999999999999999864   7


Q ss_pred             eeeccCCCCCCCcccccccCCC----------------------CccccCcccc-------ccccccCCccccccccCCC
Q psy12107        212 IRQGYGMTETSPCTLYTRFAIP----------------------EAKLGSTGQL-------VMLGYLKNEEATKETVDSE  262 (334)
Q Consensus       212 i~~~YG~tE~g~~~~~~~~~~~----------------------~~~~~~~G~~-------~~~gy~~~~~~~~~~~~~~  262 (334)
                      +.+.||+||++...........                      ....+..|..       ...+|+++++.+.+.| .+
T Consensus       300 ~~~~yg~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~-~~  378 (503)
T d3cw9a1         300 KVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKL-QD  378 (503)
T ss_dssp             EEEEEEETTTEEEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHE-ET
T ss_pred             ccccccccccceeeeeccccccccccccccccceeeeeecccCcccCCCccccccccccccccccccCChhhhHHHh-cC
Confidence            9999999999865443222111                      1122333322       5667889999888888 68


Q ss_pred             CceecCceEEEecCCcEEEEccCCceEEEcCEEee---------------------------------------------
Q psy12107        263 GWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA---------------------------------------------  297 (334)
Q Consensus       263 ~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~---------------------------------------------  297 (334)
                      |||+|||+|++++||.++++||.||+||++|++|+                                             
T Consensus       379 g~~~TgD~g~~~~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~  458 (503)
T d3cw9a1         379 GWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSA  458 (503)
T ss_dssp             TEEEEEEEEEECTTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCH
T ss_pred             CceecccccccccCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCCH
Confidence            99999999999999999999999999999999999                                             


Q ss_pred             -------------eeeeccCcEEEeecCCCCCCchhhHHHHhhhhc
Q psy12107        298 -------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVFGT  330 (334)
Q Consensus       298 -------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~~~  330 (334)
                                   ++++|.. |.++++||+|++|||+|++||++++
T Consensus       459 ~~l~~~~~~~~l~~~~~P~~-i~~v~~~P~t~~GKi~R~~L~~~~~  503 (503)
T d3cw9a1         459 DALDTFCRSSELADFKRPKR-YFILDQLPKNALNKVLRRQLVQQVS  503 (503)
T ss_dssp             HHHHHHHHHSSSCGGGSCSE-EEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred             HHHHHHHHhcCCCCCCCccE-EEEECCCCcCCCcCccHHHHHHhcC
Confidence                         5556666 9999999999999999999999763

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=2.3e-40  Score=306.86  Aligned_cols=255  Identities=24%  Similarity=0.341  Sum_probs=205.8

Q ss_pred             CCCCCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhC
Q psy12107         54 PKISPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYG  133 (334)
Q Consensus        54 ~~~~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G  133 (334)
                      .+..++|+++|+|||||||.||+|+++|.++...........       .....++++...|++|..++.. ++..+..|
T Consensus       161 ~p~~~~d~a~i~~TSGTTG~PK~v~~s~~~~~~~~~~~~~~~-------~~~~~d~~l~~~p~~~~~~~~~-~~~~l~~~  232 (514)
T d1amua_         161 VPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-------NVTEKDRIGQFASISFDASVWE-MFMALLTG  232 (514)
T ss_dssp             CCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-------CCCTTCEEEECSCTTSTHHHHH-HHHHHTTT
T ss_pred             CCCCcccceEEEEccCCCCCcccccccccccccccccccccc-------cccccccccceecccccccccc-cccccccc
Confidence            345688999999999999999999999999988877766654       3678899999999999999887 67778888


Q ss_pred             cEEEEcCC---CCHHHHHHHHHHcCCeEEeechHHHHHHhcCCCCCccccccceeeeecCCCCCHHHHHHHHHHhccCCC
Q psy12107        134 MHMITIPK---FTPETYIECVVKYKPTILFVVPSLLLFLASHPAVTPEHLASIREVTCGAAPATKSLIDKFKQKVQREDI  210 (334)
Q Consensus       134 ~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G~~l~~~~~~~~~~~~~~~~~  210 (334)
                      +++++...   .+....++.+..+.++.+..+|......      ...++++++.++++|+++++++.+++.+     ++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~G~~~~~~~~~~~~~-----~~  301 (514)
T d1amua_         233 ASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHL------DPERILSIQTLITAGSATSPSLVNKWKE-----KV  301 (514)
T ss_dssp             CEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTS------CTTTCCSCSEEEEESSCCCHHHHHHHTT-----TS
T ss_pred             ccccccccccccchhhhhhhhhhhhcccccceeeecccc------cccccccccEEEEecccCCHHHhhhhcc-----ce
Confidence            88887653   5678889999999999999999765432      3456789999999999999999877655     44


Q ss_pred             ceeeccCCCCCCCcccccccCC-------------------------CCccccCcccc------ccccccCCcccccccc
Q psy12107        211 TIRQGYGMTETSPCTLYTRFAI-------------------------PEAKLGSTGQL------VMLGYLKNEEATKETV  259 (334)
Q Consensus       211 ~i~~~YG~tE~g~~~~~~~~~~-------------------------~~~~~~~~G~~------~~~gy~~~~~~~~~~~  259 (334)
                      .+++.||+||++.+++......                         .....+..|++      ++.||+++++.+...|
T Consensus       302 ~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~  381 (514)
T d1amua_         302 TYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKF  381 (514)
T ss_dssp             EEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHE
T ss_pred             eEEEeeccccCceeeeeccccccccCcccccccceeeeeEeeecccceecCCCCeeEEEEccCcccccccccccccceee
Confidence            7999999999998665322211                         01222334443      7899999998877765


Q ss_pred             ------CCCCceecCceEEEecCCcEEEEccCCceEEEcCEEee------------------------------------
Q psy12107        260 ------DSEGWLHTGDVAYYDEDGYFYIVDRTKELIKVKGNQVA------------------------------------  297 (334)
Q Consensus       260 ------~~~~~~~TGD~~~~~~dg~~~~~GR~~d~i~~~G~~i~------------------------------------  297 (334)
                            +.++||+|||+|++|+||+++++||.+|+|+++|++|+                                    
T Consensus       382 ~~~~~~~~~~~~~TGD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~  461 (514)
T d1amua_         382 VDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFV  461 (514)
T ss_dssp             EECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEE
T ss_pred             EeccccCCCceEEECCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEE
Confidence                  34789999999999999999999999999999999999                                    


Q ss_pred             -------------------eeeeccCcEEEeecCCCCCCchhhHHHHhhh
Q psy12107        298 -------------------PYKKLAGGVKFLETIPRNPAGKVLRNELKVF  328 (334)
Q Consensus       298 -------------------~~~~~~~~i~~v~~lP~t~~GKi~r~~l~~~  328 (334)
                                         ++++|.. |+++++||+|++|||+|++||+.
T Consensus       462 ~~~~~~~~~l~~~~~~~l~~~~~p~~-i~~v~~lP~t~~GKi~R~~L~~~  510 (514)
T d1amua_         462 SEKHIPLEQLRQFSSEELPTYMIPSY-FIQLDKMPLTSNGKIDRKQLPEP  510 (514)
T ss_dssp             ESSCCCHHHHHHHHHHHSCGGGSCSE-EEECSSCCBCTTSSBCGGGSCCC
T ss_pred             cCCCCCHHHHHHHHHhhCCcccCceE-EEEeCCCCCCCCcChhHHhcCCC
Confidence                               6677777 99999999999999999999984

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=82.81  E-value=1.1  Score=38.75  Aligned_cols=103  Identities=8%  Similarity=0.032  Sum_probs=71.4

Q ss_pred             hhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEEEEcC-CCCHHHHHHHHHHcCC
Q psy12107         78 KLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHMITIP-KFTPETYIECVVKYKP  156 (334)
Q Consensus        78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~i~~~~~  156 (334)
                      .+|++.+..........+...    +..++|++...++-...+  ...+++++..|+..+.++ .+..+.+...+++.++
T Consensus        47 ~lTy~el~~~~~~lA~~L~~~----Gi~~Gd~Vai~~~ns~e~--~v~~lA~~~~G~i~vpl~~~~~~~~l~~~l~~~~~  120 (541)
T d1lcia_          47 NITYAEYFEMSVRLAEAMKRY----GLNTNHRIVVCSENSLQF--FMPVLGALFIGVAVAPANDIYNERELLNSMNISQP  120 (541)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHH----TCCTTCEEEEECSSCSST--HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCC
T ss_pred             EeeHHHHHHHHHHHHHHHHHc----CcCCCCEEEEEeCCCHHH--HHHHHHHHHhCeEEEecCCCCCHHHHHHHHHhccc
Confidence            468888877776666554332    367888888887754333  333688889999888875 4788999999999999


Q ss_pred             eEEeechHHHHHHhcCCCCCccccccceeeeecC
Q psy12107        157 TILFVVPSLLLFLASHPAVTPEHLASIREVTCGA  190 (334)
Q Consensus       157 t~l~~~p~~l~~l~~~~~~~~~~~~~lr~v~~~G  190 (334)
                      ..++.....+..+.+..    ..++.++.+++..
T Consensus       121 ~~vi~~~~~~~~~~~~~----~~~~~~~~~~~~~  150 (541)
T d1lcia_         121 TVVFVSKKGLQKILNVQ----KKLPIIQKIIIMD  150 (541)
T ss_dssp             SEEEECGGGHHHHHHHH----HHCTTCCEEEETT
T ss_pred             eEEeeeccccccchhcc----ccccccceeeeec
Confidence            99999887766654421    2334455555443

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=81.08  E-value=3.1  Score=35.00  Aligned_cols=95  Identities=14%  Similarity=0.119  Sum_probs=66.4

Q ss_pred             CCCCEEEEecCCCCCCCchhhhhcchHHHHHhhhhccCccccCCCCCCCCCceEEEecchhhhhHHHHHHHHHHHhCcEE
Q psy12107         57 SPNDLAMLPYSSGTTGVPKGVKLSHNNCAVNLEQCVHPDIVNHIPTSDTSQETVLSVLPFFHIYGFNGILNVVMMYGMHM  136 (334)
Q Consensus        57 ~~~~~a~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~G~~~  136 (334)
                      .|+.+|++.-.+|.       .+|.+.+..........+...    +..+++++...++-..  .+...+++++..|+..
T Consensus        15 ~pd~~al~~~~~~~-------~~Ty~el~~~~~~~a~~L~~~----Gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~v~   81 (503)
T d3cw9a1          15 APDHCALAVPARGL-------RLTHAELRARVEAVAARLHAD----GLRPQQRVAVVAPNSA--DVVIAILALHRLGAVP   81 (503)
T ss_dssp             STTSEEEEEGGGTE-------EEEHHHHHHHHHHHHHHHHHT----TCCTTCEEEEECCSCH--HHHHHHHHHHHHTCEE
T ss_pred             CCCCeEEEECCCCc-------EEeHHHHHHHHHHHHHHHHHc----CcCCCCEEEEEeCCCH--HHHHHHHHHHHhCcEE
Confidence            35677877655553       267777776665555544332    2678888888877544  3334478888899998


Q ss_pred             EEcC-CCCHHHHHHHHHHcCCeEEeechH
Q psy12107        137 ITIP-KFTPETYIECVVKYKPTILFVVPS  164 (334)
Q Consensus       137 ~~~~-~~~~~~~~~~i~~~~~t~l~~~p~  164 (334)
                      +.++ .+.++.+...+++.++..++....
T Consensus        82 vpi~~~~~~~~i~~~l~~~~~~~~i~~~~  110 (503)
T d3cw9a1          82 ALLNPRLKSAELAELIKRGEMTAAVIAVG  110 (503)
T ss_dssp             EEECTTSCHHHHHHHHHHTTCSEEEESSC
T ss_pred             EEeCCCCCHHHHHHHHHhcCCcEEEeecc
Confidence            8775 478899999999999999876643