Psyllid ID: psy12113

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
LFNNEQKGLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYIRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYIRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQNKDEPWRHKMNRSVSVDAVNTSSRGQVRSSNWRSTHSSMKKNLSNISQSK
cccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHcccEEEEcccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccHHHHHHHHHccEEEEcccccEEEEEcccccccEEEEEEEccEEEEEccEEEEEEcccccccccccccccccccccEEEEEEEEccEEEEEEEHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHcccEEEEEccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHcccEEEEcccccEEEEEccccHHHHEEEEEEcEEEEEEcccEEEEEccccccccccccccccccccEEEEEEEEccccEEEEEcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccc
LFNNEQKGLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGAlisiflppalsieLTELYIRVFNPVKISKKQFKELTSEATICKLaqgesyaieertsADERLSILLRGKLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGAlisiflppalsieLTELYIRVFNPVKISKKQFKELTSEATICKLaqgesyaieertsADERLSILLRGKmtvtcndthlhyvcpfqfvdspeymscqnssdeLYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELIstnaqnkdepwrhkmnrsvsvdavntssrgqvrssnwrsTHSSMKKNlsnisqsk
LFNNEQKGLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYIRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYIRVFNPVKISKKQFKELTSEATICKLaqgesyaieertsaDERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELIStnaqnkdepwrhKMNRsvsvdavntssrgqvrssnwrsthssmkknlsnisqsk
LFNNEQKGLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYIRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERlsillrgklllAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYIRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQNKDEPWRHKMNRSVSVDAVNTSSRGQVRSSNWRSTHSSMKKNLSNISQSK
*******GLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYIRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYIRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELIS******************************************************
**NNEQKGLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYIRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYIRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMS*****DELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSL***********************************************************
LFNNEQKGLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYIRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYIRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQNKDEPWRHKMNRSVSVDA********************************
****EQKGLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYIRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYIRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNA*******RHK***SVSVDAVNTS****************************
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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LFNNEQKGLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYIRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYIRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQNKDEPWRHKMNRSVSVDAVNTSSRGQVRSSNWRSTHSSMKKNLSNISQSK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query369 2.2.26 [Sep-21-2011]
B8Q0B2360 Blood vessel epicardial s yes N/A 0.539 0.552 0.430 1e-40
Q9DG23357 Blood vessel epicardial s yes N/A 0.661 0.683 0.386 1e-40
Q8NE79360 Blood vessel epicardial s yes N/A 0.539 0.552 0.415 7e-40
B1H1G2338 Blood vessel epicardial s yes N/A 0.539 0.588 0.425 5e-39
Q9ES83358 Blood vessel epicardial s yes N/A 0.539 0.555 0.405 8e-39
Q3BCU4356 Blood vessel epicardial s yes N/A 0.539 0.558 0.400 2e-38
Q5PQZ7352 Blood vessel epicardial s yes N/A 0.647 0.678 0.389 2e-38
Q0IH22338 Blood vessel epicardial s N/A N/A 0.539 0.588 0.410 3e-38
Q8JH92338 Blood vessel epicardial s N/A N/A 0.539 0.588 0.410 3e-38
Q9HBV1291 Popeye domain-containing no N/A 0.528 0.670 0.367 1e-30
>sp|B8Q0B2|POPD1_PIG Blood vessel epicardial substance OS=Sus scrofa GN=BVES PE=2 SV=1 Back     alignment and function desciption
 Score =  167 bits (423), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/202 (43%), Positives = 121/202 (59%), Gaps = 3/202 (1%)

Query: 112 ILLRGKLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIEL 171
           ILLRG  +L +G  +   WA ++ C  D  +WN +   +NV H   L+    P  +  EL
Sbjct: 67  ILLRG--MLTIGCTLYIVWATLYRCALDIMIWNSVFLGINVLHLSYLLYKKRPVKIEKEL 124

Query: 172 TELYIRVFNPVKISKKQFKELTSE-ATICKLAQGESYAIEERTSADERLSILLRGKMTVT 230
             +Y R+F P+++    FK LT +   I  L +G++YA E++TS D+RLSILL+GKM V+
Sbjct: 125 KGIYQRLFEPLRVPPDLFKRLTGQFCMIQTLKKGQAYAAEDKTSVDDRLSILLKGKMKVS 184

Query: 231 CNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPM 290
                LH + P  F+DSPE+ S Q    E +QV+I A+++C +LCWSR  L   L   P 
Sbjct: 185 YRGHFLHNIYPCAFIDSPEFRSTQMHKGEKFQVTIIADDNCRFLCWSRERLTYFLESEPF 244

Query: 291 LKSVFNSLIGKDITQKLYSLNE 312
           L  VF  LIGKDIT KLYSLN+
Sbjct: 245 LYEVFRYLIGKDITNKLYSLND 266
Cell adhesion molecule involved in the establishment and/or maintenance of cell integrity. Involved in the formation and regulation of the tight junction (TJ) paracellular permeability barrier in epithelial cells. Plays a role in VAMP3-mediated vesicular transport and recycling of different receptor molecules through its interaction with VAMP3. Plays a role in the regulation of cell shape and movement by modulating the Rho-family GTPase activity through its interaction with ARHGEF25/GEFT. Induces primordial adhesive contact and aggregation of epithelial cells in a Ca(2+)-independent manner. Also involved in striated muscle regeneration and repair and in the regulation of cell spreading.
Sus scrofa (taxid: 9823)
>sp|Q9DG23|POPD1_CHICK Blood vessel epicardial substance OS=Gallus gallus GN=BVES PE=1 SV=1 Back     alignment and function description
>sp|Q8NE79|POPD1_HUMAN Blood vessel epicardial substance OS=Homo sapiens GN=BVES PE=1 SV=1 Back     alignment and function description
>sp|B1H1G2|POPD1_XENTR Blood vessel epicardial substance OS=Xenopus tropicalis GN=bves PE=2 SV=1 Back     alignment and function description
>sp|Q9ES83|POPD1_MOUSE Blood vessel epicardial substance OS=Mus musculus GN=Bves PE=1 SV=1 Back     alignment and function description
>sp|Q3BCU4|POPD1_RAT Blood vessel epicardial substance OS=Rattus norvegicus GN=Bves PE=2 SV=2 Back     alignment and function description
>sp|Q5PQZ7|POPD1_DANRE Blood vessel epicardial substance OS=Danio rerio GN=bves PE=2 SV=1 Back     alignment and function description
>sp|Q0IH22|PPD1B_XENLA Blood vessel epicardial substance-B OS=Xenopus laevis GN=bves-b PE=2 SV=1 Back     alignment and function description
>sp|Q8JH92|PPD1A_XENLA Blood vessel epicardial substance-A OS=Xenopus laevis GN=bves-a PE=1 SV=1 Back     alignment and function description
>sp|Q9HBV1|POPD3_HUMAN Popeye domain-containing protein 3 OS=Homo sapiens GN=POPDC3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
270007243417 hypothetical protein TcasGA2_TC013795 [T 0.680 0.601 0.507 5e-73
340722589 479 PREDICTED: blood vessel epicardial subst 0.677 0.521 0.505 8e-69
328787476 479 PREDICTED: blood vessel epicardial subst 0.677 0.521 0.501 2e-68
350418596 479 PREDICTED: blood vessel epicardial subst 0.677 0.521 0.501 3e-68
357613506444 hypothetical protein KGM_03874 [Danaus p 0.655 0.545 0.516 4e-68
383851637 475 PREDICTED: blood vessel epicardial subst 0.677 0.526 0.498 8e-68
380027317 479 PREDICTED: LOW QUALITY PROTEIN: blood ve 0.677 0.521 0.498 1e-67
307190194 476 Popeye domain-containing protein 2 [Camp 0.639 0.495 0.510 4e-66
332025826 472 Blood vessel epicardial substance [Acrom 0.677 0.529 0.486 6e-66
91082155385 PREDICTED: similar to blood vessel epica 0.593 0.568 0.513 5e-64
>gi|270007243|gb|EFA03691.1| hypothetical protein TcasGA2_TC013795 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  280 bits (717), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 131/258 (50%), Positives = 186/258 (72%), Gaps = 7/258 (2%)

Query: 117 KLLLAVGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYI 176
           + LL++G+     W GV VC  D  +WN +L V+N++H   L   FLPP L++ELT+LY+
Sbjct: 106 RALLSIGYFFLTLWGGVEVCAPDILLWNSLLVVLNLTHTVLLAWKFLPPTLTLELTDLYL 165

Query: 177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHL 236
           +VF P+++S+K FKEL  EAT+  L +G+ YA+E+ + ADERLSILL+GK+ VTC+DTHL
Sbjct: 166 KVFKPLRVSRKHFKELVREATVMTLERGDIYAVEDVSPADERLSILLKGKLRVTCDDTHL 225

Query: 237 HYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFN 296
           H++   QFVDSPE+ S    SD+++QV+ITAEED +YLCW R+ L+R+LRHRP+LK V +
Sbjct: 226 HFINVHQFVDSPEWESNHEQSDDVFQVTITAEEDSVYLCWPRMKLERVLRHRPILKVVLD 285

Query: 297 SLIGKDITQKLYSLNELIS-----TNAQNKDEPWRHKMNRSVSVDAVNTSSRGQVRSSNW 351
           S+IGKDITQKLY+LNE ++          +DE W    NRS+S+DAVNT + G VRS  +
Sbjct: 286 SIIGKDITQKLYALNEHLTGLSDERQRGKRDEMWAKAHNRSMSMDAVNTGTTGLVRSQAY 345

Query: 352 RSTH--SSMKKNLSNISQ 367
           RSTH  +S+  N+ ++ +
Sbjct: 346 RSTHRKNSLTSNVGSLGK 363

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340722589|ref|XP_003399686.1| PREDICTED: blood vessel epicardial substance-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|328787476|ref|XP_001121912.2| PREDICTED: blood vessel epicardial substance-like [Apis mellifera] Back     alignment and taxonomy information
>gi|350418596|ref|XP_003491909.1| PREDICTED: blood vessel epicardial substance-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|357613506|gb|EHJ68548.1| hypothetical protein KGM_03874 [Danaus plexippus] Back     alignment and taxonomy information
>gi|383851637|ref|XP_003701338.1| PREDICTED: blood vessel epicardial substance-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|380027317|ref|XP_003697374.1| PREDICTED: LOW QUALITY PROTEIN: blood vessel epicardial substance-like [Apis florea] Back     alignment and taxonomy information
>gi|307190194|gb|EFN74309.1| Popeye domain-containing protein 2 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332025826|gb|EGI65983.1| Blood vessel epicardial substance [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|91082155|ref|XP_970119.1| PREDICTED: similar to blood vessel epicardial substance [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
UNIPROTKB|F1NTG5624 POPDC3 "Popeye domain-containi 0.542 0.320 0.415 4.6e-48
UNIPROTKB|E1C6K5 690 POPDC3 "Popeye domain-containi 0.542 0.289 0.415 1.6e-47
UNIPROTKB|E1BB94360 BVES "Uncharacterized protein" 0.520 0.533 0.435 3.7e-39
UNIPROTKB|E2R5H9360 BVES "Uncharacterized protein" 0.609 0.625 0.369 1.1e-37
UNIPROTKB|E1C6K6276 POPDC3 "Popeye domain-containi 0.542 0.724 0.415 1.5e-37
UNIPROTKB|F1NTG6481 POPDC3 "Popeye domain-containi 0.542 0.415 0.415 1.5e-37
UNIPROTKB|Q9DG23357 BVES "Blood vessel epicardial 0.542 0.560 0.415 1.5e-37
UNIPROTKB|Q8NE79360 BVES "Blood vessel epicardial 0.609 0.625 0.369 1.9e-37
UNIPROTKB|B8Q0B2360 BVES "Blood vessel epicardial 0.517 0.530 0.421 2.4e-37
UNIPROTKB|F1RYQ3327 BVES "Blood vessel epicardial 0.517 0.584 0.421 2.4e-37
UNIPROTKB|F1NTG5 POPDC3 "Popeye domain-containing protein 3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 403 (146.9 bits), Expect = 4.6e-48, Sum P(2) = 4.6e-48
 Identities = 84/202 (41%), Positives = 120/202 (59%)

Query:   122 VGFLISAFWAGVHVCFYDAFVWNMILAVVNVSHAGALISIFLPPALSIELTELYIRVFNP 181
             VG  +   WA ++ C  D  +WN +  VVN+ H   L+    P  +  EL+ LY R+F P
Sbjct:   339 VGCALFIIWATLYRCALDIMIWNSVFLVVNLLHFIYLVYKRRPIKIEKELSSLYKRMFEP 398

Query:   182 VKISKKQFKELTSE-ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVC 240
             + +  + F+ LT +   I  L  G++YA E++TS D+RLSILL+GKM V+     LH + 
Sbjct:   399 LHVPPELFQRLTGQFCNIQTLKTGQAYAAEDKTSVDDRLSILLKGKMKVSYRGHFLHNIY 458

Query:   241 PFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIG 300
             P  F+DSPE+ S Q +  E +QV+I A+++C +LCWSR  L   L   P L  +F  LIG
Sbjct:   459 PCAFIDSPEFRSTQMNRGEKFQVTIIADDNCKFLCWSRERLTYFLETEPFLYEIFKYLIG 518

Query:   301 KDITQKLYSLNE-LISTNAQNK 321
             KDIT KLYSLN+  ++  A  K
Sbjct:   519 KDITNKLYSLNDPTLNDKASKK 540
GO:0016020 "membrane" evidence=IEA
UNIPROTKB|E1C6K5 POPDC3 "Popeye domain-containing protein 3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BB94 BVES "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R5H9 BVES "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1C6K6 POPDC3 "Popeye domain-containing protein 3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NTG6 POPDC3 "Popeye domain-containing protein 3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9DG23 BVES "Blood vessel epicardial substance" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8NE79 BVES "Blood vessel epicardial substance" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B8Q0B2 BVES "Blood vessel epicardial substance" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1RYQ3 BVES "Blood vessel epicardial substance" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5PQZ7POPD1_DANRENo assigned EC number0.38990.64760.6789yesN/A
Q9DG23POPD1_CHICKNo assigned EC number0.38690.66120.6834yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
pfam04831154 pfam04831, Popeye, Popeye protein conserved region 2e-45
pfam04831154 pfam04831, Popeye, Popeye protein conserved region 2e-08
>gnl|CDD|203101 pfam04831, Popeye, Popeye protein conserved region Back     alignment and domain information 
 Score =  152 bits (387), Expect = 2e-45
 Identities = 61/145 (42%), Positives = 92/145 (63%), Gaps = 3/145 (2%)

Query: 170 ELTELYIRVFNPVKISKKQFKELT--SEATICKLAQGESYAIEERTSADERLSILLRGKM 227
           EL  LY  +F P+ +  + FKE+T   E  +  L +G++YA+E +T  D RLS+LL G++
Sbjct: 1   ELEALYKALFLPLHVPLEVFKEITGCFECEVHTLKKGQTYAVEGKTPID-RLSLLLSGRI 59

Query: 228 TVTCNDTHLHYVCPFQFVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRH 287
            V+ +   LHY+ P QF+DSPE+ S + S +  +QV++TA+ DC YL W R  L  LL  
Sbjct: 60  RVSQDGQFLHYIFPHQFLDSPEWESLRPSEEGKFQVTLTADTDCRYLSWRRKRLYLLLAK 119

Query: 288 RPMLKSVFNSLIGKDITQKLYSLNE 312
              +  +F+ L+G DI +KLYSLN+
Sbjct: 120 ERYIARLFSVLLGYDIAEKLYSLND 144

The function of Popeye proteins is not well understood. They are predominantly expressed in cardiac and skeletal muscle. This family represents a conserved region which includes three potential transmembrane domains. Length = 154
>gnl|CDD|203101 pfam04831, Popeye, Popeye protein conserved region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 369
PF04831153 Popeye: Popeye protein conserved region; InterPro: 100.0
PRK11753211 DNA-binding transcriptional dual regulator Crp; Pr 99.59
PRK09392236 ftrB transcriptional activator FtrB; Provisional 99.59
PF04831153 Popeye: Popeye protein conserved region; InterPro: 99.53
PRK11161235 fumarate/nitrate reduction transcriptional regulat 99.51
cd00038115 CAP_ED effector domain of the CAP family of transc 99.49
PRK10402226 DNA-binding transcriptional activator YeiL; Provis 99.49
COG0664214 Crp cAMP-binding proteins - catabolite gene activa 99.4
PF0002791 cNMP_binding: Cyclic nucleotide-binding domain; In 99.36
PRK09391230 fixK transcriptional regulator FixK; Provisional 99.34
smart00100120 cNMP Cyclic nucleotide-monophosphate binding domai 99.31
TIGR03697193 NtcA_cyano global nitrogen regulator NtcA, cyanoba 99.29
PRK13918202 CRP/FNR family transcriptional regulator; Provisio 99.25
PLN03192 823 Voltage-dependent potassium channel; Provisional 99.18
COG2905 610 Predicted signal-transduction protein containing c 99.11
PLN02868 413 acyl-CoA thioesterase family protein 99.06
KOG0498|consensus 727 98.73
KOG1113|consensus368 98.71
KOG0614|consensus 732 98.37
KOG2968|consensus 1158 98.14
KOG0614|consensus 732 98.14
KOG0500|consensus536 98.1
KOG0501|consensus 971 98.01
KOG2968|consensus 1158 97.78
KOG1113|consensus368 97.57
KOG0499|consensus815 97.47
PRK11832207 putative DNA-binding transcriptional regulator; Pr 97.4
PF0788371 Cupin_2: Cupin domain; InterPro: IPR013096 This fa 94.38
COG3718270 IolB Uncharacterized enzyme involved in inositol m 91.94
COG0662127 {ManC} Mannose-6-phosphate isomerase [Carbohydrate 86.06
PRK11171266 hypothetical protein; Provisional 82.6
PRK13290125 ectC L-ectoine synthase; Reviewed 81.67
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle Back     alignment and domain information 
Probab=100.00  E-value=3.2e-43  Score=307.21  Aligned_cols=149  Identities=52%  Similarity=0.917  Sum_probs=145.1

Q ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHhc-cEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeCCeEEEEecCCeeeecc
Q psy12113        170 ELTELYIRVFNPVKISKKQFKELTSE-ATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQFVDSP  248 (369)
Q Consensus       170 e~~~lY~~lF~pL~ls~~qf~~L~~~-~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~g~~l~~i~pg~F~ge~  248 (369)
                      |++++|+++|+||++|+++|++|+++ ++++++++|+.|+.||+|++| +|++++||+++|+++|+++|+|+|.||+|||
T Consensus         1 Ele~lY~~lF~Pl~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~d-rLSlLLsGr~~Vs~~g~fLH~I~p~qFlDSP   79 (153)
T PF04831_consen    1 ELEELYETLFQPLKVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPID-RLSLLLSGRMRVSCDGRFLHYIYPYQFLDSP   79 (153)
T ss_pred             CHHHHHHHhccCcCCCHHHHHHHHhhhceEEEecCCceeeecCCcccc-eEeEEEcCcEEEEECCEeeEeecccccccCh
Confidence            68999999999999999999999998 899999999999999999998 9999999999999999999999999999999


Q ss_pred             ccccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113        249 EYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ  319 (369)
Q Consensus       249 s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~  319 (369)
                      ||++.+++++|.|||||+|+|+|+|++|+|++|+.+++++|+|+.+|.+++|+||++|||++|+++.+..+
T Consensus        80 EW~s~~~s~~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~vF~~liGkDI~~KLy~ln~~~~~~~g  150 (153)
T PF04831_consen   80 EWESLRPSEDDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAVFSNLIGKDIAEKLYSLNEKLFTKRG  150 (153)
T ss_pred             hhhccccCCCCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhhhHhHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999876654

It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional Back     alignment and domain information
>PRK09392 ftrB transcriptional activator FtrB; Provisional Back     alignment and domain information
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle Back     alignment and domain information
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional Back     alignment and domain information
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional Back     alignment and domain information
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] Back     alignment and domain information
>PRK09391 fixK transcriptional regulator FixK; Provisional Back     alignment and domain information
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial Back     alignment and domain information
>PRK13918 CRP/FNR family transcriptional regulator; Provisional Back     alignment and domain information
>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] Back     alignment and domain information
>PLN02868 acyl-CoA thioesterase family protein Back     alignment and domain information
>KOG0498|consensus Back     alignment and domain information
>KOG1113|consensus Back     alignment and domain information
>KOG0614|consensus Back     alignment and domain information
>KOG2968|consensus Back     alignment and domain information
>KOG0614|consensus Back     alignment and domain information
>KOG0500|consensus Back     alignment and domain information
>KOG0501|consensus Back     alignment and domain information
>KOG2968|consensus Back     alignment and domain information
>KOG1113|consensus Back     alignment and domain information
>KOG0499|consensus Back     alignment and domain information
>PRK11832 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel) Back     alignment and domain information
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11171 hypothetical protein; Provisional Back     alignment and domain information
>PRK13290 ectC L-ectoine synthase; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query369
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 99.75
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 99.74
3dn7_A194 Cyclic nucleotide binding regulatory protein; stru 99.73
2pqq_A149 Putative transcriptional regulator; APC7345, strep 99.73
3ukn_A212 Novel protein similar to vertebrate potassium VOL 99.7
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 99.69
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 99.69
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 99.69
4ev0_A216 Transcription regulator, CRP family; CAMP binding, 99.69
3ryp_A210 Catabolite gene activator; CAMP receptor protein ( 99.67
3dv8_A220 Transcriptional regulator, CRP/FNR family; cyclic 99.67
3iwz_A230 CAP-like, catabolite activation-like protein; XCC, 99.67
2gau_A232 Transcriptional regulator, CRP/FNR family; structu 99.66
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 99.66
2oz6_A207 Virulence factor regulator; winged helix, helix-tu 99.66
3fx3_A237 Cyclic nucleotide-binding protein; helix_TURN_heli 99.66
1zyb_A232 Transcription regulator, CRP family; NP_813211.1, 99.66
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 99.66
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 99.64
3dkw_A227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 99.64
3d0s_A227 Transcriptional regulatory protein; CAMP receptor 99.63
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 99.63
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 99.61
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 99.6
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 99.59
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 99.59
2fmy_A220 COOA, carbon monoxide oxidation system transcripti 99.56
3e6c_C250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 99.56
4ava_A 333 Lysine acetyltransferase; allosteric regulation, d 99.55
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.54
1ft9_A222 Carbon monoxide oxidation system transcription reg 99.53
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 99.53
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.52
2bgc_A238 PRFA; bacterial infection, human pathogen, transcr 99.52
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 99.52
3la7_A243 Global nitrogen regulator; activator, DNA-binding, 99.52
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.52
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.51
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.44
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.43
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.39
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.38
1o7f_A469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.35
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.34
3b02_A195 Transcriptional regulator, CRP family; structural 99.32
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.3
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 99.29
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.25
3cf6_E 694 RAP guanine nucleotide exchange factor (GEF) 4; EP 99.24
2zcw_A202 TTHA1359, transcriptional regulator, FNR/CRP famil 99.2
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.1
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 98.85
3rns_A227 Cupin 2 conserved barrel domain protein; structura 93.78
3fjs_A114 Uncharacterized protein with RMLC-like cupin fold; 92.44
3lwc_A119 Uncharacterized protein; structural genomics, unkn 90.33
1yhf_A115 Hypothetical protein SPY1581; structural genomics, 89.85
2ozj_A114 Cupin 2, conserved barrel; cupin superfamily prote 89.76
1v70_A105 Probable antibiotics synthesis protein; structural 88.7
4e2g_A126 Cupin 2 conserved barrel domain protein; MCSG, PSI 88.03
2qjv_A270 Uncharacterized IOLB-like protein; structural geno 86.84
3ibm_A167 Cupin 2, conserved barrel domain protein; cupin 2 86.45
2pfw_A116 Cupin 2, conserved barrel domain protein; cupin do 86.37
3rns_A227 Cupin 2 conserved barrel domain protein; structura 85.96
3h8u_A125 Uncharacterized conserved protein with double-STR 85.63
2gu9_A113 Tetracenomycin polyketide synthesis protein; X-RAY 85.21
2fqp_A97 Hypothetical protein BP2299; double-stranded beta- 81.34
2q30_A110 Uncharacterized protein; double-stranded beta-heli 81.24
3kgz_A156 Cupin 2 conserved barrel domain protein; metallopr 81.17
3jzv_A166 Uncharacterized protein RRU_A2000; structural geno 80.97
2vpv_A166 Protein MIF2, MIF2P; nucleus, mitosis, centromere, 80.47
3nw4_A368 Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc 80.46
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Back     alignment and structure
Probab=99.75  E-value=1.8e-17  Score=138.28  Aligned_cols=122  Identities=17%  Similarity=0.225  Sum_probs=107.0

Q ss_pred             hhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEe---CC--eE---EEEecCCeeeecc
Q psy12113        177 RVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTC---ND--TH---LHYVCPFQFVDSP  248 (369)
Q Consensus       177 ~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~---~g--~~---l~~i~pg~F~ge~  248 (369)
                      ++|+.+  ++++++.+.+.++.+++++|+.++.||++ .+ ++|+|++|.++++.   +|  .+   +.+++||+++|+.
T Consensus        12 ~~f~~l--~~~~~~~l~~~~~~~~~~~g~~i~~~g~~-~~-~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG~~   87 (142)
T 3mdp_A           12 RFFASL--TDEQLKDIALISEEKSFPTGSVIFKENSK-AD-NLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVS   87 (142)
T ss_dssp             HHHHTS--CHHHHHHHHHTEEEEEECTTCEEECTTSB-CC-EEEEEEESCEEEECC---------CEEEEECTTCEECGG
T ss_pred             chhccC--CHHHHHHHHHhhcEEecCCCCEEEeCCCC-CC-cEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEechH
Confidence            357765  89999999999999999999999999997 45 89999999999986   23  36   8999999999999


Q ss_pred             ccccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Q psy12113        249 EYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKL  307 (369)
Q Consensus       249 s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL  307 (369)
                      +++.+.     .+++|++|.++|+++.++++++.++++++|.+...+...+++.+++||
T Consensus        88 ~~~~~~-----~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~rl  141 (142)
T 3mdp_A           88 SLIKPY-----HYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAAAVLARL  141 (142)
T ss_dssp             GSSTTC-----BCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHcCCC-----CceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHhc
Confidence            988644     345699999999999999999999999999999999988888888775
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Back     alignment and structure
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Back     alignment and structure
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Back     alignment and structure
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Back     alignment and structure
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Back     alignment and structure
>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} Back     alignment and structure
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum} Back     alignment and structure
>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9 Back     alignment and structure
>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense} Back     alignment and structure
>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Back     alignment and structure
>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus} Back     alignment and structure
>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2} Back     alignment and structure
>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Back     alignment and structure
>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina} Back     alignment and structure
>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Back     alignment and structure
>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Back     alignment and structure
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I} Back     alignment and structure
>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp} Back     alignment and structure
>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} Back     alignment and structure
>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} Back     alignment and structure
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae} Back     alignment and structure
>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 369
d1vp6a_133 b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo 9e-05
d1ne6a2132 b.82.3.2 (A:245-376) Regulatory subunit of Protein 0.001
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

 Score = 39.7 bits (92), Expect = 9e-05
 Identities = 13/118 (11%), Positives = 25/118 (21%), Gaps = 9/118 (7%)

Query: 184 ISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCNDTHLHYVCPFQ 243
           +      E+        +  G           D    ++       T N   L       
Sbjct: 22  LGPAVLVEIVRALRARTVPAGA-VICRIGEPGDRMFFVVEGSVSVATPNPVELGPGAF-- 78

Query: 244 FVDSPEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGK 301
                 +      S E    +++A      L         L    P +  +F     +
Sbjct: 79  ------FGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALE 130
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query369
d2gaua2142 Transcriptional regulator PG0396, N-terminal domai 99.77
d2oz6a2134 Cyclic AMP receptor-like protein Vfr {Pseudomonas 99.76
d1i5za2132 Catabolite gene activator protein, N-terminal doma 99.74
d1zyba2147 Probable transcription regulator BT4300, N-termina 99.73
d1o5la1129 CRP-like transcriptional regulator TM1171, N-termi 99.7
d1ft9a2132 CO-sensing protein CooA, N-terminal domain {Rhodos 99.69
d1ne6a1136 Regulatory subunit of Protein kinase A {Cow (Bos t 99.66
d3e5ua2139 Chlorophenol reduction protein CprK {Desulfitobact 99.65
d1vp6a_133 Putative ion channel CnbD {Mesorhizobium loti [Tax 99.65
d1cx4a2147 Regulatory subunit of Protein kinase A {Rat (Rattu 99.64
d1cx4a1136 Regulatory subunit of Protein kinase A {Rat (Rattu 99.62
d1ne6a2132 Regulatory subunit of Protein kinase A {Cow (Bos t 99.58
d1o7fa3124 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.56
d1o7fa2155 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.55
d1q3ea_193 HCN pacemaker channel {Mouse (Mus musculus) [TaxId 99.54
d2zcwa2112 Transcriptional regulator TTHA1359, N-terminal dom 99.46
d1wgpa_137 Probable cyclic nucleotide-gated ion channel 6 {Th 99.41
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 95.18
d1v70a_105 Hypothetical protein TTHA0104 {Thermus thermophilu 93.62
d1o4ta_115 Hypothetical protein TM1287 {Thermotoga maritima [ 91.0
d1vj2a_114 Hypothetical protein TM1459 {Thermotoga maritima [ 89.89
d2b8ma1108 Hypothetical protein MJ0764 {Archaeon Methanococcu 88.53
d1y9qa299 Probable transcriptional regulator VC1968, C-termi 88.25
d2phda1351 Gentisate 1,2-dioxygenase {Pseudaminobacter salicy 86.27
d2bgca2131 Listeriolysin regulatory protein PrfA, N-terminal 82.83
d2d40a1308 Gentisate 1,2-dioxygenase {Escherichia coli [TaxId 80.72
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=99.77  E-value=2e-18  Score=145.28  Aligned_cols=134  Identities=18%  Similarity=0.176  Sum_probs=116.4

Q ss_pred             HHHHhhcCCCCCCHHHHHHHHhccEEEEecCCCeEEecCCcCCcceEEEEEeceEEEEeC---C--eEEEEecCCeeeec
Q psy12113        173 ELYIRVFNPVKISKKQFKELTSEATICKLAQGESYAIEERTSADERLSILLRGKMTVTCN---D--THLHYVCPFQFVDS  247 (369)
Q Consensus       173 ~lY~~lF~pL~ls~~qf~~L~~~~~~r~L~kGe~l~~EG~t~~d~~L~lVlsG~vrV~~~---g--~~l~~i~pg~F~ge  247 (369)
                      ++-+++|++|  |+++.+.+.+.++++++++|+.++.||+++ + .+|+|.+|.++++..   |  .++++++||+++|+
T Consensus         3 ~~~~elf~~l--~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~-~-~ly~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~   78 (142)
T d2gaua2           3 HLLRDVWSLL--NEEERELLDKEIQPFPCKKASTVFSEGDIP-N-NLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGM   78 (142)
T ss_dssp             GGSHHHHTTC--CHHHHHHHHHHCEEEEECTTCEEECTTCCC-C-EEEEEEESCEEEEC-----CCCEEEEECTTCEESH
T ss_pred             hHHHHHHccC--CHHHHHHHHhcCEEEEECCCCEEEeCCCcc-c-eEEEEEecceeeEeeccccceeeeecccccchhhh
Confidence            3446689987  899999999999999999999999999974 5 899999999999972   3  48899999999999


Q ss_pred             cccccccCCCCCcceeEEEeeCCeEEEEEeHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12113        248 PEYMSCQNSSDELYQVSITAEEDCLYLCWSRISLDRLLRHRPMLKSVFNSLIGKDITQKLYSLNELISTNAQ  319 (369)
Q Consensus       248 ~s~~~~~~ss~~~~qvTi~A~edcrvl~w~r~~L~~Ll~~~P~L~~~~~~ligkdla~KL~~l~~~i~~~a~  319 (369)
                      .+++.+.|.     +++++|.++|+++.++++++.++++++|.+...+.    +.+++|+...++++.+.+.
T Consensus        79 ~~~~~~~~~-----~~~~~a~~~s~v~~i~~~~~~~l~~~~~~~~~~~~----~~l~~rl~~~~~~i~~l~q  141 (142)
T d2gaua2          79 RPYFAEETC-----SSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFL----KALAKELGYAERRTVTLTQ  141 (142)
T ss_dssp             HHHHHTSCC-----SSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccCCc-----eeEEEecCCEEEEEEeHHHHHHHHHHCHHHHHHHH----HHHHHHHHHHHHHHHHhcC
Confidence            998885544     46999999999999999999999999999988765    4557799999999887654
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Back     information, alignment and structure
>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} Back     information, alignment and structure
>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure