Psyllid ID: psy12131

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGAET
Secondary Structure (PSIPRED)
cccEEEEEcccEEEEEEccccccEEEEEEEEccccccccEEEEEEEccccEEEEcccEEEEcccccEEEEEEEEEEcccEEEEEEccEEEccccEEEEEEEccEEEEEEccccccccEEEEEEEEccccEEEEEEEEEEcccccccccccccccccEEEEEEEEcccccccEEEEEEEEccccccEEEEEEcccccccccEEEEEEEEcccccccEEEEEEEEEcccccccccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccEEEccccEEEEEcccHccccEEEEEEEcccccEEEEEEEEEEEcccccccccccEEEEcccEEEEEEEEccccccEEEEEEcccEcccccccEEEEEccccEEEEEcccccccEEEEEEEEccccccccEEEEEEcccccccccccccccccEEEEEEEccccccccEEEEEEEccccccccEEEcccccccccccccccEEEEEcccccccEEEEEEEEEccccccccccEEEEcccccc
Coil and Loop (DISEMBL)
EKEIELLynresldlDRVTLKLAGLYQCiasnnigestsknfivnviyppevsvekqwihtaPDMRAEIICNvyanppakvewfrdgtaitlggridmhvSSEKHSLLVRHIkdtdfgnymcqasnnlgssqqfiqlsgipnipvfqkssrrlgpdgyRLVWQVDTYSGIIQYLLKFRereeltpwrnivipsdgslagpiytqsynitgLQLFTQYEASVLAknrfgwsrpskaYVFATEGAET
Flexible Loop (DISEMBL)
ekeiellynresldlDRVTLKLAGLYQCIAsnnigestsknFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRereeltpwrniVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKnrfgwsrpsKAYVFATEGAET
Low Complexity Region (SEG)
EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGAET
Disordered region (IsUnstruct)
*****LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFA******
Disordered Region (DISOPRED)
**EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL**********EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPV*********PDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKA***A******
Disordered Region (DISEMBL)
EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGAET
Disordered Region (DISPRO)
***IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKS***LGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGAET
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
A2AJ76	5100	Hemicentin-2 OS=Mus muscu	no	N/A	0.579	0.027	0.316	3e-13
Q8NDA2	5065	Hemicentin-2 OS=Homo sapi	yes	N/A	0.530	0.025	0.325	3e-12
Q26474	349	Lachesin OS=Schistocerca	N/A	N/A	0.563	0.395	0.263	2e-11
Q99PJ0	344	Neurotrimin OS=Mus muscul	no	N/A	0.608	0.433	0.291	5e-11
Q98919	338	Limbic system-associated	yes	N/A	0.485	0.352	0.291	7e-11
Q13449	338	Limbic system-associated	no	N/A	0.485	0.352	0.291	8e-11
Q8BLK3	341	Limbic system-associated	no	N/A	0.485	0.348	0.291	9e-11
Q62813	338	Limbic system-associated	no	N/A	0.485	0.352	0.291	1e-10
Q8HW98	336	IgLON family member 5 OS=	no	N/A	0.514	0.375	0.292	1e-10
Q58DA5	345	Neurotrimin OS=Bos taurus	no	N/A	0.620	0.440	0.275	1e-10

>sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 13/155 (8%)

Query: 2    KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS-------V 54
            K I+LL     L +     + AG Y C+ +N +GE+T KN+ V V+ PP +S       V
Sbjct: 2620 KNIQLLPGTHGLQILNAQKEDAGQYTCVVTNELGEAT-KNYHVEVLIPPSISKDDPLGEV 2678

Query: 55   EKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKD 114
              + + T  +    + C  +A PP  + W++DG  +T   R+   V  E   L ++  + 
Sbjct: 2679 SVKEVKTKVNSSLTLECECWATPPPSISWYKDGRPVTPSHRLS--VLGEGRLLQIQPTQV 2736

Query: 115  TDFGNYMCQASNNLG-SSQQFIQLSGIPNIPVFQK 148
            +D G Y+C A+N  G   Q F  L  +P  P+FQK
Sbjct: 2737 SDSGRYLCVATNVAGEDDQDFNVLIQVP--PMFQK 2769

Mus musculus (taxid: 10090)

>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 6    LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE--KQWIHTAP 63
            LL     L + +   + +GLY C+ASN  GE+  +NF V V+ PP +  E  ++ I    
Sbjct: 2401 LLAGGWMLKMTQTQEQDSGLYSCLASNEAGEA-RRNFSVEVLVPPSIENEDLEEVIKVLD 2459

Query: 64   DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
               A ++CNV  +P  K+ WF+DG  +  G     H+S +   L V     +  G+Y C 
Sbjct: 2460 GQTAHLMCNVTGHPQPKLTWFKDGRPLARGDA--HHISPDGVLLQVLQANLSSAGHYSCI 2517

Query: 124  ASNNLGSSQQFIQLS 138
            A+N +G   +  QLS
Sbjct: 2518 AANAVGEKTKHFQLS 2532

Homo sapiens (taxid: 9606)

>sp|Q26474|LACH_SCHAM Lachesin OS=Schistocerca americana GN=LAC PE=1 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 6/144 (4%)

Query: 7   LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR 66
           +Y    L + R+  +  G Y C+A N +G+   +N  V V +PP ++V +  +  A    
Sbjct: 180 IYRGNVLKISRIGKEDRGTYYCVAENGVGKGARRNIAVEVEFPPVITVPRPRLGQALQYD 239

Query: 67  AEIICNVYANPPAKVEWFRDGTAITLGGR--IDMHVSSEKHSLLVR--HIKDTDFGNYMC 122
            ++ C+V A PP  + W +D T ++      I    ++++ +   R   I+   +G Y C
Sbjct: 240 MDLECHVEAYPPPAITWLKDETVLSNNQHYSISHFATADEFTDTTRVITIEKRQYGKYQC 299

Query: 123 QASNNLGSSQQFIQL--SGIPNIP 144
           +A+N LG +++ ++L  + IP  P
Sbjct: 300 KAANKLGEAREEVELFETIIPVCP 323

May play a role in early neuronal differentiation and axon outgrowth.

Schistocerca americana (taxid: 7009)

>sp|Q99PJ0|NTRI_MOUSE Neurotrimin OS=Mus musculus GN=Ntm PE=2 SV=2

 Score = 68.2 bits (165), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 9/158 (5%)

Query: 2   KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT 61
           K +  +   E L++  +T + +G Y+C ASN++     +   V V YPP +S E +    
Sbjct: 175 KAVGFVSEDEYLEIQGITREQSGEYECSASNDVAAPVVRRVKVTVNYPPYIS-EAKGTGV 233

Query: 62  APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVR----HIKDTDF 117
               +  + C   A P A+ +WF+D   +  G +    V  E    L +    ++ + D+
Sbjct: 234 PVGQKGTLQCEASAVPSAEFQWFKDDKRLVEGKK---GVKVENRPFLSKLTFFNVSEHDY 290

Query: 118 GNYMCQASNNLGSSQQFIQLSGIPNIP-VFQKSSRRLG 154
           GNY C ASN LG +   I L G   +  V   +SRR G
Sbjct: 291 GNYTCVASNKLGHTNASIMLFGPGAVSEVNNGTSRRAG 328

Neural cell adhesion molecule.

Mus musculus (taxid: 10090)

>sp|Q98919|LSAMP_CHICK Limbic system-associated membrane protein OS=Gallus gallus PE=2 SV=1

 Score = 67.8 bits (164), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 1/120 (0%)

Query: 18  VTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP 77
           +T + +G Y+C A+N +  +  K   V V YPP ++ E +    A   +A + C   A P
Sbjct: 187 ITREQSGKYECKAANEVASADVKQVRVTVNYPPTIT-ESKSNEAATGRQALLRCEASAVP 245

Query: 78  PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
               EW+RD T I     +++  +  +  L+V ++ +  +GNY C A+N LG +   + L
Sbjct: 246 TPDFEWYRDDTRINSANGLEIKSTGSQSLLMVANVTEEHYGNYTCVAANKLGVTNASLYL 305

Mediates selective neuronal growth and axon targeting. Probably serves as a recognition molecule for the formation of limbic connections.

Gallus gallus (taxid: 9031)

>sp|Q13449|LSAMP_HUMAN Limbic system-associated membrane protein OS=Homo sapiens GN=LSAMP PE=1 SV=2

 Score = 67.8 bits (164), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 18  VTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP 77
           +T + +G Y+C A+N +  +  K   V V YPP ++ E +        +A + C   A P
Sbjct: 187 ITREQSGKYECKAANEVSSADVKQVKVTVNYPPTIT-ESKSNEATTGRQASLKCEASAVP 245

Query: 78  PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
               EW+RD T I     +++  +  + SL V ++ +  +GNY C A+N LG +   + L
Sbjct: 246 APDFEWYRDDTRINSANGLEIKSTEGQSSLTVTNVTEEHYGNYTCVAANKLGVTNASLVL 305

Mediates selective neuronal growth and axon targeting. Contributes to the guidance of developing axons and remodeling of mature circuits in the limbic system. Essential for normal growth of the hyppocampal mossy fiber projection.

Homo sapiens (taxid: 9606)

>sp|Q8BLK3|LSAMP_MOUSE Limbic system-associated membrane protein OS=Mus musculus GN=Lsamp PE=1 SV=1

 Score = 67.4 bits (163), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 18  VTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP 77
           +T + +G Y+C A+N +  +  K   V V YPP ++ E +        +A + C   A P
Sbjct: 187 ITREQSGKYECKAANEVSSADVKQVKVTVNYPPTIT-ESKSNEATTGRQASLKCEASAVP 245

Query: 78  PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
               EW+RD T I     +++  +  + SL V ++ +  +GNY C A+N LG +   + L
Sbjct: 246 APDFEWYRDDTRINSANGLEIKSTEGQSSLTVTNVTEEHYGNYTCVAANKLGVTNASLVL 305

Mediates selective neuronal growth and axon targeting. Contributes to the guidance of developing axons and remodeling of mature circuits in the limbic system. Essential for normal growth of the hyppocampal mossy fiber projection.

Mus musculus (taxid: 10090)

>sp|Q62813|LSAMP_RAT Limbic system-associated membrane protein OS=Rattus norvegicus GN=Lsamp PE=1 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 1/120 (0%)

Query: 18  VTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP 77
           +T + +G Y+C A+N +  +  K   V V YPP ++ E +        +A + C   A P
Sbjct: 187 ITREQSGKYECKAANEVSSADVKQVKVTVNYPPTIT-ESKSNEATTGRQASLKCEASAVP 245

Query: 78  PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
               EW+RD T I     +++  +  + SL V ++ +  +GNY C A+N LG +   + L
Sbjct: 246 APDFEWYRDDTRINSANGLEIKSTEGQSSLTVTNVTEEHYGNYTCVAANKLGVTNASLVL 305

Mediates selective neuronal growth and axon targeting. Contributes to the guidance of developing axons and remodeling of mature circuits in the limbic system. Essential for normal growth of the hyppocampal mossy fiber projection.

Rattus norvegicus (taxid: 10116)

>sp|Q8HW98|IGLO5_MOUSE IgLON family member 5 OS=Mus musculus GN=Iglon5 PE=2 SV=2

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 4/130 (3%)

Query: 11  ESLDLDRVTLKLAGLYQCIASNNIGEST-SKNFIVNVIYPPEVSVEKQWIHTAPDMRAEI 69
           E L++  +    AG Y+C+  N +  +  S+  +V V YPP ++ +     TA    A +
Sbjct: 178 EILEISDIQRGQAGEYECVTHNGVNSAPDSRRVLVTVNYPPTIT-DVTSARTALGRAALL 236

Query: 70  ICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE--KHSLLVRHIKDTDFGNYMCQASNN 127
            C   A PPA  +W++D   ++ G    + V +E  +  LL  ++    +GNY C+A+N 
Sbjct: 237 RCEAMAVPPADFQWYKDDRLLSSGSAEGLKVQTERTRSMLLFANVSARHYGNYTCRAANR 296

Query: 128 LGSSQQFIQL 137
           LG+S   ++L
Sbjct: 297 LGASSASMRL 306

Mus musculus (taxid: 10090)

>sp|Q58DA5|NTRI_BOVIN Neurotrimin OS=Bos taurus GN=NTM PE=2 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 4/156 (2%)

Query: 2   KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT 61
           K +  +   E L++  +T + +G Y+C ASN++     +   V V YPP +S E +    
Sbjct: 175 KAVGFVSEDEYLEIQGITREQSGYYECSASNDVAAPVVRRVKVTVNYPPYIS-EAKGTGV 233

Query: 62  APDMRAEIICNVYANPPAKVEWFRDGTAITLGGR-IDMHVSSEKHSLLVRHIKDTDFGNY 120
               +  + C   A P A+ +W++D   +  G + + +        L+  ++ + D+GNY
Sbjct: 234 PVGQKGTLQCEASAVPSAEFQWYKDDKRLVEGKKGVKVENRPFLSKLIFFNVSEHDYGNY 293

Query: 121 MCQASNNLGSSQQFIQLSGIPNIPVFQK--SSRRLG 154
            C ASN LG +   I L G   +       SSRR G
Sbjct: 294 TCVASNKLGHTNASITLFGPGAVSEVSNGTSSRRAG 329

Neural cell adhesion molecule.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
322799121	416	hypothetical protein SINV_01539 [Solenop	0.991	0.584	0.414	7e-53
110751164	471	PREDICTED: hemicentin-1-like [Apis melli	0.991	0.515	0.408	3e-50
270004453	431	hypothetical protein TcasGA2_TC003806 [T	0.987	0.561	0.404	7e-50
189235691	469	PREDICTED: similar to lachesin, putative	0.987	0.515	0.404	1e-49
340710447	471	PREDICTED: titin-like [Bombus terrestris	0.991	0.515	0.4	1e-48
383852143	484	PREDICTED: hemicentin-1-like [Megachile	0.987	0.5	0.408	2e-48
350427297	471	PREDICTED: titin-like [Bombus impatiens]	0.991	0.515	0.391	5e-48
345485754	536	PREDICTED: hemicentin-2-like [Nasonia vi	0.975	0.445	0.375	1e-47
307187752	477	Limbic system-associated membrane protei	0.991	0.509	0.369	1e-44
242018223	500	limbic system-associated membrane protei	0.938	0.46	0.335	2e-42

>gi|322799121|gb|EFZ20568.1| hypothetical protein SINV_01539 [Solenopsis invicta]

 Score =  213 bits (541), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 102/246 (41%), Positives = 151/246 (61%), Gaps = 3/246 (1%)

Query: 1   EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH 60
           + EI LL  R  L        L+  Y C+A N +G+    +  + + Y PE+ V+K W+H
Sbjct: 108 DGEIPLLDARPQLRFHADNRNLSDRYTCVADNGVGDPAEAHIDLRIRYKPEIYVKKPWVH 167

Query: 61  TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
             P++R ++ C V A P AKVEW+ +   +    RI  H +   HSLL+RH+K TD+G Y
Sbjct: 168 AYPELRVQLDCTVNAWPEAKVEWYFNNETLKYTSRIVKHNAGNDHSLLIRHVKTTDYGAY 227

Query: 121 MCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRE- 179
           +C+ASN+LG +++ ++LS I N  VF+K SR      Y  +W+VD+YS +I+Y   FR+ 
Sbjct: 228 LCRASNSLGITEKIVELSEIANPAVFKKESRSTSSTSYNFIWEVDSYSPVIEYQFWFRKY 287

Query: 180 -REELTPWRNIVIPSDGS-LAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYV 237
            R     WR + IP+DGS +A P++ +S+N+TGL   T YEA VL++NR+GWS PS+   
Sbjct: 288 RRGSGGEWRKLYIPADGSDIASPVHVRSFNLTGLDAATHYEAVVLSRNRYGWSHPSEILR 347

Query: 238 FATEGA 243
           F TEGA
Sbjct: 348 FHTEGA 353

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110751164|ref|XP_392759.3| PREDICTED: hemicentin-1-like [Apis mellifera]

 Score =  204 bits (519), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 100/245 (40%), Positives = 149/245 (60%), Gaps = 2/245 (0%)

Query: 1   EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH 60
           + EI LLY+R  L     +   AG Y C+A+N++GE       ++V Y P + + K W+H
Sbjct: 162 DGEIPLLYDRSRLRFHAESPSDAGRYTCVANNDVGEPAMATIDLHVRYKPRIEMTKTWMH 221

Query: 61  TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
               +R ++ C V A P A VEW+ +  ++    RI  H +   HSL++R+++ TD+G Y
Sbjct: 222 APAGIRVQLHCGVTAWPEATVEWYFNNKSVKYSSRIVKHNAGSDHSLVIRNVRTTDYGFY 281

Query: 121 MCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRER 180
           +C+ASN+LG ++  ++LSGI N  VF+K+S  L    Y  VW+V +Y+ I+QY  KFR+ 
Sbjct: 282 LCRASNSLGITEAAVELSGIANPAVFKKTSHSLSKTSYNFVWEVHSYNRIVQYEFKFRKY 341

Query: 181 EELTP--WRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVF 238
               P  WR + IPS       I+T S+ +TGL+  T YEA VL+KNR+GWS+PS+   F
Sbjct: 342 VNGVPGQWRKLYIPSGSDGNSYIHTYSFKLTGLEEATHYEALVLSKNRYGWSKPSEIIRF 401

Query: 239 ATEGA 243
           ATEGA
Sbjct: 402 ATEGA 406

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004453|gb|EFA00901.1| hypothetical protein TcasGA2_TC003806 [Tribolium castaneum]

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 101/250 (40%), Positives = 157/250 (62%), Gaps = 8/250 (3%)

Query: 2   KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT 61
           +EI+LL  RE L       ++AG+Y+C A+N +GE  S    +N+IYPPE+   + WIHT
Sbjct: 133 EEIKLLNPRELLKFTASDRQMAGIYECRAANGVGEPASAQIELNIIYPPELMTSRSWIHT 192

Query: 62  APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 121
           AP  R ++ C + A+P A V W +    + L  R+   V  +K++LL+++++ +DFG Y 
Sbjct: 193 APGHRVQLECKISADPQATVTWTKGDMPVPLDSRVLSLVDGDKYTLLIKNVQKSDFGIYT 252

Query: 122 CQASNNLGSSQQFIQLSGIPNIPVFQKSSRR--LGPDGYRLVWQVDTYSGIIQYLLKFRE 179
           C+A N LG  +  IQLSG+PN  VF+K+  +     D Y L+W+VD+Y+ II+Y L F+ 
Sbjct: 253 CKAINELGQGELQIQLSGVPNPGVFKKTDDKNINSKDSYTLIWEVDSYTPIIEYNLWFQP 312

Query: 180 REELTP-----WRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSK 234
            +  T      W  + IP++ S +GP+Y++SY I GL+  T YEA ++++NR+GWS+PS 
Sbjct: 313 YKPKTGLSKPNWTKLTIPTEHS-SGPVYSKSYTIKGLKEKTVYEALLVSRNRYGWSKPSP 371

Query: 235 AYVFATEGAE 244
              FAT GA+
Sbjct: 372 ILRFATAGAD 381

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235691|ref|XP_966538.2| PREDICTED: similar to lachesin, putative [Tribolium castaneum]

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 101/250 (40%), Positives = 157/250 (62%), Gaps = 8/250 (3%)

Query: 2   KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT 61
           +EI+LL  RE L       ++AG+Y+C A+N +GE  S    +N+IYPPE+   + WIHT
Sbjct: 171 EEIKLLNPRELLKFTASDRQMAGIYECRAANGVGEPASAQIELNIIYPPELMTSRSWIHT 230

Query: 62  APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 121
           AP  R ++ C + A+P A V W +    + L  R+   V  +K++LL+++++ +DFG Y 
Sbjct: 231 APGHRVQLECKISADPQATVTWTKGDMPVPLDSRVLSLVDGDKYTLLIKNVQKSDFGIYT 290

Query: 122 CQASNNLGSSQQFIQLSGIPNIPVFQKSSRR--LGPDGYRLVWQVDTYSGIIQYLLKFRE 179
           C+A N LG  +  IQLSG+PN  VF+K+  +     D Y L+W+VD+Y+ II+Y L F+ 
Sbjct: 291 CKAINELGQGELQIQLSGVPNPGVFKKTDDKNINSKDSYTLIWEVDSYTPIIEYNLWFQP 350

Query: 180 REELTP-----WRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSK 234
            +  T      W  + IP++ S +GP+Y++SY I GL+  T YEA ++++NR+GWS+PS 
Sbjct: 351 YKPKTGLSKPNWTKLTIPTEHS-SGPVYSKSYTIKGLKEKTVYEALLVSRNRYGWSKPSP 409

Query: 235 AYVFATEGAE 244
              FAT GA+
Sbjct: 410 ILRFATAGAD 419

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710447|ref|XP_003393801.1| PREDICTED: titin-like [Bombus terrestris]

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 98/245 (40%), Positives = 146/245 (59%), Gaps = 2/245 (0%)

Query: 1   EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH 60
           E EI  LY+R  L     +   AG Y C+A+N++GE       + + Y P + + K W+H
Sbjct: 162 EGEIPFLYDRSRLRFHAESPSDAGRYTCVANNDVGEPAIATIDLYIRYKPRIEMTKTWMH 221

Query: 61  TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
               +R ++ C V A P A VEW+ +  ++    RI  H +   HSL++R+++ TD+G Y
Sbjct: 222 APAGIRVQLHCGVTAWPEATVEWYFNNRSVKYSSRIVKHNAGSDHSLVIRNVRTTDYGFY 281

Query: 121 MCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRER 180
           +C+ASN+LG ++  ++LSG+ N PVF+K+S  L    Y  VW+V +YS I+QY  +FR+ 
Sbjct: 282 LCRASNSLGITEAAVELSGVANPPVFKKTSHSLSKTSYNFVWEVHSYSPIVQYEFRFRKY 341

Query: 181 EELTP--WRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVF 238
               P  W  + IPS       I+T S+ +TGLQ  T YEA VL+KNR+GWS+ S+   F
Sbjct: 342 VNGVPGQWCKLYIPSGNDGNSFIHTYSFKLTGLQEATHYEALVLSKNRYGWSKSSEIIRF 401

Query: 239 ATEGA 243
           ATEGA
Sbjct: 402 ATEGA 406

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852143|ref|XP_003701588.1| PREDICTED: hemicentin-1-like [Megachile rotundata]

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/245 (40%), Positives = 146/245 (59%), Gaps = 3/245 (1%)

Query: 1   EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH 60
           + EI  LY+R  L     +   AG Y C+A+N++GES      + V + P + + K W+H
Sbjct: 162 DGEIPFLYDRSRLRFHAESPNDAGRYTCVANNDVGESAVATIDLFVRFKPRIEMAKTWMH 221

Query: 61  TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
             P +R ++ C V A P A VEW+ +  ++    RI  H S   HSL++R+++ TD+G Y
Sbjct: 222 APPGIRVQLHCAVTAWPEATVEWYFNNKSVKYSSRIVKHNSGSDHSLVIRNVRTTDYGFY 281

Query: 121 MCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRER 180
           +C+ASN+LG ++  ++LSGI N  VF+K    L    Y  VW+V +YS I+QY  +FR+ 
Sbjct: 282 LCRASNSLGITEAAVELSGIANPAVFKK-KHSLSKTSYNFVWEVYSYSPIVQYEFRFRKY 340

Query: 181 EELTP--WRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVF 238
               P  W N+ IPS       I+T S+N+TGL+  T YE  VL+KNR+GWS+PS    F
Sbjct: 341 MNGVPGQWHNLYIPSGSDGNSFIHTYSFNLTGLEEATHYEVLVLSKNRYGWSKPSDIIRF 400

Query: 239 ATEGA 243
           ATEGA
Sbjct: 401 ATEGA 405

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350427297|ref|XP_003494714.1| PREDICTED: titin-like [Bombus impatiens]

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 96/245 (39%), Positives = 146/245 (59%), Gaps = 2/245 (0%)

Query: 1   EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH 60
           + EI  LY+R  L     +   AG Y C+A+N++GE       + + Y P + + K W+H
Sbjct: 162 DGEIPFLYDRSRLRFHAESPSDAGRYTCVANNDVGEPAMATIDLYIRYKPRIEMTKTWMH 221

Query: 61  TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
               +R ++ C V A P A VEW+ +  ++    RI  H +   HSL++R+++ TD+G Y
Sbjct: 222 APAGIRVQLHCGVTAWPEATVEWYFNNRSVKYSSRIVKHNAGSDHSLVIRNVRTTDYGFY 281

Query: 121 MCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRER 180
           +C+ASN+LG ++  ++LSG+ N PVF+K+S  L    Y  VW+V +YS I+QY  +FR+ 
Sbjct: 282 LCRASNSLGITEAAVELSGVANPPVFKKTSHSLSKTSYNFVWEVHSYSPIVQYEFRFRKY 341

Query: 181 EELTP--WRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVF 238
               P  W  + IPS       I+T S+ +TGLQ  + YEA VL+KNR+GWS+ S+   F
Sbjct: 342 VNGVPGQWCKLYIPSGNDGNSFIHTYSFKLTGLQEASHYEALVLSKNRYGWSKSSEIIRF 401

Query: 239 ATEGA 243
           ATEGA
Sbjct: 402 ATEGA 406

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485754|ref|XP_001606997.2| PREDICTED: hemicentin-2-like [Nasonia vitripennis]

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 93/248 (37%), Positives = 148/248 (59%), Gaps = 9/248 (3%)

Query: 2   KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT 61
           +E+ +L + + L +      LAG+Y C ASN IGE       + + + PEV+   +W+H+
Sbjct: 215 QELPILASGQRLRILANNRSLAGIYSCQASNGIGEPAKAVIELKIKHKPEVTAVTRWLHS 274

Query: 62  APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI---------DMHVSSEKHSLLVRHI 112
           AP++RA + C V A P A+++W+ +   +    R+         +   +++ HSL++R +
Sbjct: 275 APEIRARLECLVVAYPEARLDWYLENEKVVRSQRVLRYKQDTSLEDGSAAQLHSLVIRSV 334

Query: 113 KDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQ 172
           +  D G+Y C+ASN LG S+  ++LSG+   P+ +K  R    + Y  +W+VD+YS I++
Sbjct: 335 QPRDLGHYSCRASNELGQSEASLELSGVAKPPLLKKEIRSSSSNSYNFIWEVDSYSPIVE 394

Query: 173 YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP 232
           Y   FR+ +    WR + IPS    AGP+Y +S+N+TGLQ   QYEA VLA+NRFGWS P
Sbjct: 395 YQFWFRQMDSREDWRRLFIPSGNEGAGPVYARSFNLTGLQASRQYEALVLARNRFGWSSP 454

Query: 233 SKAYVFAT 240
           S+   FAT
Sbjct: 455 SRIIRFAT 462

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187752|gb|EFN72724.1| Limbic system-associated membrane protein [Camponotus floridanus]

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/246 (36%), Positives = 146/246 (59%), Gaps = 3/246 (1%)

Query: 1   EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH 60
           E EI LL  R  L        L+G Y C+A+N + +    +  + + Y PE+ V+K W+H
Sbjct: 167 EGEIPLLDVRSQLSFRAENRNLSGRYTCVATNEVSDPAIAHIDLRIRYKPEIFVKKPWVH 226

Query: 61  TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
             P +RA++ C V A P AKV+W+     +    R+  +     + L++R++ ++D+G+Y
Sbjct: 227 AYPGIRAQLNCIVTAWPEAKVDWYFRNETLKYTSRVVKYSIGNDYRLMIRNVNESDYGSY 286

Query: 121 MCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRER 180
           +C+ASN+LG +++ I+LSGI N  +F+K SR      Y  +W+VD+Y  II+Y   FR+ 
Sbjct: 287 LCRASNSLGFTEKIIELSGIANQAIFKKESRSTSSTSYNFIWEVDSYYPIIEYQFWFRKY 346

Query: 181 EELT--PWRNIVIPSDGS-LAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYV 237
           ++ T   WR + IP D   L+  ++ +S+N+TGL   T YEA+VL++ + GWS PS    
Sbjct: 347 KKDTNDKWRRLHIPGDNDVLSSVVHVRSFNLTGLDAATHYEATVLSRTQHGWSHPSAILH 406

Query: 238 FATEGA 243
           F TEGA
Sbjct: 407 FHTEGA 412

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018223|ref|XP_002429579.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis] gi|212514537|gb|EEB16841.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis]

 Score =  178 bits (451), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/268 (33%), Positives = 150/268 (55%), Gaps = 38/268 (14%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
           S+ +++ T   AG+YQC ASN +G+   ++ +++V+YPPE+ VE+ W+H+     A+++C
Sbjct: 184 SITIEQATRHQAGVYQCKASNGVGKPVEQSIVLHVLYPPEIEVERSWVHSGEGFEAQLVC 243

Query: 72  NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
            V++ PPA V W+RD   +    R  M V   +H+L++R ++ +DFGNY C A N LG  
Sbjct: 244 IVHSEPPADVLWYRDTLRLDTTERRSMEVRGSRHTLIIRKVQASDFGNYSCVADNPLGKM 303

Query: 132 QQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFR----EREELTP-- 185
           +Q++QLSG PN  VF+        D Y + W V++Y+ I ++ L FR    + +  +P  
Sbjct: 304 RQYLQLSGKPNQVVFRSEPMGRYKDSYNITWAVNSYTPIEEFKLYFRKLFDQNQPNSPQQ 363

Query: 186 ---------------------------WRNIVIPSDGSLAGPIYTQ--SYNITGLQLFTQ 216
                                      W ++++P   ++   ++TQ  SY I GL+  +Q
Sbjct: 364 HHAKRPTRRYPSTFQENETSNQLGRGDWSDVILP---AIPSELFTQQMSYVIRGLEPGSQ 420

Query: 217 YEASVLAKNRFGWSRPSKAYVFATEGAE 244
           YEA V A+NRFGW+  S+ + F+T G+E
Sbjct: 421 YEARVRARNRFGWNELSEQFHFSTRGSE 448

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
FB|FBgn0017590	545	klg "klingon" [Drosophila mela	0.922	0.414	0.350	2.6e-38
FB|FBgn0037107	467	CG7166 [Drosophila melanogaste	0.955	0.501	0.298	5.6e-29
FB|FBgn0025878	500	wrapper "wrapper" [Drosophila	0.697	0.342	0.320	4.4e-23
UNIPROTKB|F6UXF9	3263	F6UXF9 "Uncharacterized protei	0.457	0.034	0.358	4.8e-14
UNIPROTKB|E1B9K4	5073	E1B9K4 "Uncharacterized protei	0.502	0.024	0.351	1.2e-13
UNIPROTKB|F1PEU6	5106	F1PEU6 "Uncharacterized protei	0.457	0.021	0.358	1.2e-13
RGD|1304550	1109	Boc "BOC cell adhesion associa	0.497	0.110	0.320	2.5e-13
MGI|MGI:2151153	1110	Boc "biregional cell adhesion	0.497	0.109	0.312	2.5e-13
MGI|MGI:2677838	5100	Hmcn2 "hemicentin 2" [Mus musc	0.579	0.027	0.316	3.8e-13
ZFIN|ZDB-GENE-010822-1	840	ncam2 "neural cell adhesion mo	0.926	0.270	0.281	2.5e-10

FB|FBgn0017590 klg "klingon" [Drosophila melanogaster (taxid:7227)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 82/234 (35%), Positives = 131/234 (55%)

Query:    13 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICN 72
             L L+++  + AG+YQC A N +G+  + +  ++V+YPP++ VEK WIH+     A+++C 
Sbjct:   251 LTLEKLERQQAGVYQCTADNGVGDPVTVDMRLDVLYPPDIQVEKSWIHSGEGFEAKLVCI 310

Query:    73 VYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
             V+A+P A V W+++   I    R  M   + +H L +RHI+  DFGNY C A N+LG S+
Sbjct:   311 VFADPVATVSWYQNSFPIQSTDRRIMATRANRHMLTIRHIQQEDFGNYSCVADNSLGRSR 370

Query:   133 QFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFR--EREEL--TP--W 186
             ++++LSG P    F        PD Y L W++D+Y  + +  L +R  +  E    P  W
Sbjct:   371 KYMELSGRPGAAEFYSPKWGRSPDSYNLTWKIDSYPPLEEVRLLYRRVQMNETYQQPGRW 430

Query:   187 RNIVI-PSDGSLAGPI-YTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVF 238
              + ++ P     + P+ +  SY I  L     YEA V AKNR+GW+  S  + F
Sbjct:   431 HDFILTPEHRPASEPLTHIMSYTIKNLHPGGYYEAIVQAKNRYGWNEVSDIFQF 484

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0007465 "R7 cell fate commitment" evidence=IGI

GO:0045466 "R7 cell differentiation" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0007611 "learning or memory" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0048149 "behavioral response to ethanol" evidence=IMP

GO:0007616 "long-term memory" evidence=IMP

GO:0007615 "anesthesia-resistant memory" evidence=IMP

FB|FBgn0037107 CG7166 [Drosophila melanogaster (taxid:7227)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 72/241 (29%), Positives = 125/241 (51%)

Query:     7 LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR 66
             L +  +L L+ V    AG YQC A N + +  S +  + ++ PPE++VEK W+H +    
Sbjct:   182 LSDSSTLILENVDRHHAGTYQCSADNGVKDRVSMDIQLTILSPPEITVEKSWVHASEGYD 241

Query:    67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
              E++C V+ +  +++ W+++   +    R  M+   +++SL++R+ + TDFGNY C A N
Sbjct:   242 VELVCIVHGDVNSEMLWYQNSFLLDATDRRSMYPRDDRYSLIIRNFQPTDFGNYSCVADN 301

Query:   127 NLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRE---REEL 183
              LG ++++I++SG P    F   +     D Y L W +++   + +  L +R     E  
Sbjct:   302 ALGRTKKYIEVSGRPGPADFISPALSGFLDHYNLTWTIESIPPLDEIKLLYRRLLMNETY 361

Query:   184 T-P--WRNIVI-PSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFA 239
               P  W    I P+     G  +  SY +  L+    YEA V AKN++GW+  S  + F 
Sbjct:   362 QHPGKWHEYHIKPTPIRTDGSHFLMSYLVKNLEHNAVYEAIVQAKNKYGWNEISDIHQFY 421

Query:   240 T 240
             T
Sbjct:   422 T 422

GO:0005576 "extracellular region" evidence=ISS

FB|FBgn0025878 wrapper "wrapper" [Drosophila melanogaster (taxid:7227)]

 Score = 272 (100.8 bits), Expect = 4.4e-23, P = 4.4e-23
 Identities = 59/184 (32%), Positives = 101/184 (54%)

Query:     9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 68
             NR+SL L+  +   AGL +C+ASN +GE    N  ++V++ PEVS+ +  ++T    RA 
Sbjct:   181 NRQSLILEIKSRNQAGLIECVASNGVGEPAVANVYLHVLFSPEVSIPQPVVYTKLGSRAH 240

Query:    69 IICNVYANPPAKVEWFRDGTAITLGGR-------------IDMHVSSEKHSLLVRHIKDT 115
             + C V A P A V+WF  G  + LG               +D +V++ +H L+V+ +++ 
Sbjct:   241 LECIVEAAPAATVKWFHHGLPVALGAHSTTHESELQTNRSVDHYVNAVRHMLVVKSVRNA 300

Query:   116 DFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLL 175
             D G Y C+ASN +      ++L+G P   +F+ +        + LVWQ ++   I+++ L
Sbjct:   301 DMGQYECRASNQISVKSGSVELTGRPMPCLFKINPGTQSSTSHVLVWQTESLLPIMEFKL 360

Query:   176 KFRE 179
             KFR+
Sbjct:   361 KFRQ 364

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0042063 "gliogenesis" evidence=IMP

GO:0007399 "nervous system development" evidence=IEP

GO:0007409 "axonogenesis" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F6UXF9 F6UXF9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
 Identities = 42/117 (35%), Positives = 60/117 (51%)

Query:    24 GLYQCIASNNIGESTSKNFIVNVIYPPEVSVE--KQWIHTAPDMRAEIICNVYANPPAKV 81
             GLY C+ASN  GE   +NF V V+ PP +  E  ++ +       A + CN   +P  KV
Sbjct:   655 GLYSCLASNEAGE-VRRNFSVEVLVPPRIENESLEEAVKVPEGQTAHLTCNATGHPQPKV 713

Query:    82 EWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
              WF+DG  +T GG    H+S +   L V     +  G+Y C A+N +G   +  QLS
Sbjct:   714 MWFKDGRPLT-GGDAH-HISPDGALLQVLQANLSSSGHYSCIAANAVGEKTKHFQLS 768

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|E1B9K4 E1B9K4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 190 (71.9 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 45/128 (35%), Positives = 65/128 (50%)

Query:    13 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE--KQWIHTAPDMRAEII 70
             L L R   +  GLY C+ASN  GE+  ++F V V+ PP +  E  +  +       A ++
Sbjct:  2403 LKLTRAQEQDRGLYSCLASNEAGEAR-RDFSVEVLVPPSIEKEDVEDTVKVPEGEMAHLM 2461

Query:    71 CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
             CNV  +P  KV WF+DG  +  G     HVS +   L V H   +  G+Y C A+N +G 
Sbjct:  2462 CNVSGHPQPKVTWFKDGQPLASGDA--HHVSPDGALLWVLHANLSSAGHYACVAANAIGE 2519

Query:   131 SQQFIQLS 138
               +  QLS
Sbjct:  2520 KTKHFQLS 2527

GO:0030054 "cell junction" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1PEU6 F1PEU6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 42/117 (35%), Positives = 60/117 (51%)

Query:    24 GLYQCIASNNIGESTSKNFIVNVIYPPEVSVE--KQWIHTAPDMRAEIICNVYANPPAKV 81
             GLY C+ASN  GE   +NF V V+ PP +  E  ++ +       A + CN   +P  KV
Sbjct:  2458 GLYSCLASNEAGE-VRRNFSVEVLVPPRIENESLEEAVKVPEGQTAHLTCNATGHPQPKV 2516

Query:    82 EWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
              WF+DG  +T GG    H+S +   L V     +  G+Y C A+N +G   +  QLS
Sbjct:  2517 MWFKDGRPLT-GGDAH-HISPDGALLQVLQANLSSSGHYSCIAANAVGEKTKHFQLS 2571

GO:0005509 "calcium ion binding" evidence=IEA

RGD|1304550 Boc "BOC cell adhesion associated, oncogene regulated" [Rattus norvegicus (taxid:10116)]

 Score = 169 (64.5 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
 Identities = 41/128 (32%), Positives = 69/128 (53%)

Query:    12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV-IY-PPEVSVEKQWIHTAPDMRAEI 69
             +L +D  + + +G Y+C+ASN +G+  +   + NV ++ PPEV+VE   +       A++
Sbjct:   278 NLLIDTTSEEDSGTYRCMASNGVGDPGAAVILYNVQVFEPPEVTVELSQLVIPWGQSAKL 337

Query:    70 ICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
              C V  NPP  V W R+   ++   R+ +   S K +L V  ++  D G Y C A N +G
Sbjct:   338 TCEVRGNPPPSVLWLRNAVPLSSNQRLRL---SRK-ALRVVSVRPEDEGVYQCMAENAVG 393

Query:   130 SSQQFIQL 137
             S+   +QL
Sbjct:   394 SAHAVVQL 401

GO:0007224 "smoothened signaling pathway" evidence=IEA;ISO

GO:0007411 "axon guidance" evidence=IEA;ISO

GO:0030030 "cell projection organization" evidence=ISO

GO:0030424 "axon" evidence=ISO

GO:0030426 "growth cone" evidence=ISO

GO:0043025 "neuronal cell body" evidence=IEA;ISO

GO:0044295 "axonal growth cone" evidence=IDA

GO:0045663 "positive regulation of myoblast differentiation" evidence=IEA;ISO

MGI|MGI:2151153 Boc "biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein" [Mus musculus (taxid:10090)]

 Score = 169 (64.5 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
 Identities = 40/128 (31%), Positives = 67/128 (52%)

Query:    12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV-IY-PPEVSVEKQWIHTAPDMRAEI 69
             +L +D  + + +G Y+C+ASN +G+  +   + NV ++ PPEV+VE   +       A++
Sbjct:   278 NLLIDTTSEEDSGTYRCMASNGVGDPGAAVILYNVQVFEPPEVTVELSQLVIPWGQSAKL 337

Query:    70 ICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
              C V  NPP  V W R+   +T   R+ +     + +L V  +   D G Y C A N +G
Sbjct:   338 TCEVRGNPPPSVLWLRNAVPLTSSQRLRL----SRRALRVVSVGPEDEGVYQCMAENAVG 393

Query:   130 SSQQFIQL 137
             S+   +QL
Sbjct:   394 SAHAVVQL 401

GO:0005515 "protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=ISA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IDA

GO:0007411 "axon guidance" evidence=ISO;IMP

GO:0009986 "cell surface" evidence=TAS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016202 "regulation of striated muscle tissue development" evidence=ISO

GO:0016337 "cell-cell adhesion" evidence=TAS

GO:0030030 "cell projection organization" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0045663 "positive regulation of myoblast differentiation" evidence=IMP

MGI|MGI:2677838 Hmcn2 "hemicentin 2" [Mus musculus (taxid:10090)]

 Score = 193 (73.0 bits), Expect = 3.8e-13, P = 3.8e-13
 Identities = 49/155 (31%), Positives = 77/155 (49%)

Query:     2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS-------V 54
             K I+LL     L +     + AG Y C+ +N +GE+T KN+ V V+ PP +S       V
Sbjct:  2620 KNIQLLPGTHGLQILNAQKEDAGQYTCVVTNELGEAT-KNYHVEVLIPPSISKDDPLGEV 2678

Query:    55 EKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKD 114
               + + T  +    + C  +A PP  + W++DG  +T   R+   V  E   L ++  + 
Sbjct:  2679 SVKEVKTKVNSSLTLECECWATPPPSISWYKDGRPVTPSHRLS--VLGEGRLLQIQPTQV 2736

Query:   115 TDFGNYMCQASNNLGSSQQ-FIQLSGIPNIPVFQK 148
             +D G Y+C A+N  G   Q F  L  +P  P+FQK
Sbjct:  2737 SDSGRYLCVATNVAGEDDQDFNVLIQVP--PMFQK 2769

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005604 "basement membrane" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0030054 "cell junction" evidence=IDA

GO:0050896 "response to stimulus" evidence=IEA

ZFIN|ZDB-GENE-010822-1 ncam2 "neural cell adhesion molecule 2" [Danio rerio (taxid:7955)]

 Score = 169 (64.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 69/245 (28%), Positives = 105/245 (42%)

Query:     3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 62
             E+   Y    L +  V L   G + C A + IG    K+  +++ Y P+         + 
Sbjct:   357 EVRGRYGESMLTIVVVKLSDWGRFDCEALSRIG-GHQKSMFLDIEYAPKFQANHTIFFSW 415

Query:    63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHV-SSEKHSLL-VRHIKDTDFGNY 120
                   I C+V +NPPA + W R+   I   G  +M V ++   SLL V  + D DFG Y
Sbjct:   416 EGNPVNISCDVMSNPPATMLWRREKLTIPSEGAGNMRVYTAPGRSLLEVTPMSDRDFGRY 475

Query:   121 MCQASNNLGSS-QQFIQLSG-IPNIPVFQKSSRRLGPDGYRLVWQVDTYSG--IIQYLLK 176
              C A NN+G   Q+FI     +P+ P   + S            + D++ G  I  YL+K
Sbjct:   476 NCTARNNIGMRFQEFILAQADVPSNPYSVRLSSVAQRVATVTFTKPDSHGGVPISHYLVK 535

Query:   177 FREREELTPWRNIVIPSDGSLAGPIYTQSYNI-TGLQLFTQYEASVLAKNRFGWSRPSKA 235
             +++      W+++      SL     TQ+  + T L+  T YE  V A N  G    S  
Sbjct:   536 YKDISS-QDWKDVK-----SLG----TQTIVLLTNLEPNTTYEVRVSAVNGKGQGEFSHT 585

Query:   236 YVFAT 240
               F T
Sbjct:   586 ESFQT 590

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	245
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-10
smart00409	85	smart00409, IG, Immunoglobulin	1e-10
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-10
cd00096	74	cd00096, Ig, Immunoglobulin domain	3e-09
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	4e-08
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	7e-08
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	5e-07
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	7e-07
pfam00041	84	pfam00041, fn3, Fibronectin type III domain	4e-06
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	4e-06
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	9e-06
pfam00047	62	pfam00047, ig, Immunoglobulin domain	2e-05
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	2e-05
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	2e-05
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	2e-05
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	3e-05
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	4e-05
smart00060	83	smart00060, FN3, Fibronectin type 3 domain	2e-04
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	2e-04
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	2e-04
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	3e-04
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	3e-04
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	5e-04
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	7e-04
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	0.001
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	0.002
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	0.002
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	0.002
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	0.002
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	0.003
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	0.003
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	0.004
cd05871	91	cd05871, Ig_Semaphorin_classIII, Immunoglobulin (I	0.004

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 56.0 bits (135), Expect = 1e-10
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 66  RAEIICNVYANPPAKVEWFRDG-TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 124
              + C    +PP +V W++ G   +   GR  +  S    +L + ++   D G Y C A
Sbjct: 11  SVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAA 70

Query: 125 SNNLGSSQQFIQLS 138
           +N+ GS+     L+
Sbjct: 71  TNSSGSASSGTTLT 84

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 56.0 bits (135), Expect = 1e-10
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 66  RAEIICNVYANPPAKVEWFRDG-TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 124
              + C    +PP +V W++ G   +   GR  +  S    +L + ++   D G Y C A
Sbjct: 11  SVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAA 70

Query: 125 SNNLGSSQQFIQLS 138
           +N+ GS+     L+
Sbjct: 71  TNSSGSASSGTTLT 84

Length = 85

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 56.1 bits (136), Expect = 1e-10
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 71  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
           C V  +P   V WF+DG  +    R  +      ++L + +++  D G Y C A+N+ G 
Sbjct: 22  CTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGE 81

Query: 131 SQQFIQL 137
           ++   +L
Sbjct: 82  AEASAEL 88

Length = 90

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 52.1 bits (124), Expect = 3e-09
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 67  AEIICNVYANPPAKVEWFRDGTAITLG----GRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
             + C     PP  + W ++G  +        R     SS   +L + ++   D G Y C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 123 QASNNLGSSQQFIQ 136
            ASN+ G+    + 
Sbjct: 61  VASNSAGTVSASVT 74

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 49.4 bits (118), Expect = 4e-08
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 153 LGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITG 210
           +      L W    D    I  Y++++RE+     W+ + +        P    SY +TG
Sbjct: 12  VTSTSVTLSWTPPEDDGGPITGYVVEYREKGS-GDWKEVEVT-------PGSETSYTLTG 63

Query: 211 LQLFTQYEASVLAKNRFGWSRPSKAYVFAT 240
           L+  T+YE  V A N  G S PS++    T
Sbjct: 64  LKPGTEYEFRVRAVNGGGESPPSESVTVTT 93

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 48.5 bits (116), Expect = 7e-08
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 71  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-SLLVRHIKDTDFGNYMCQASNNLG 129
           C    NP   + W +DG       RI  +   +K  +L++  +  +D G Y C   N  G
Sbjct: 16  CPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYG 75

Query: 130 S 130
           S
Sbjct: 76  S 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 45.9 bits (109), Expect = 5e-07
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 67  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
            E  C V  +P   V W ++   +  G R ++    +  SL +R++   D G+Y C+A N
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL---DDKSLKIRNVTAGDEGSYTCEAEN 56

Query: 127 NLGSS 131
            +G  
Sbjct: 57  MVGKI 61

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 45.1 bits (107), Expect = 7e-07
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 67  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
             + C    NP   + W +DG  +    R     S    +L ++ +   D G Y C A N
Sbjct: 5   VTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGS----TLTIKSVSLEDSGLYTCVAEN 60

Query: 127 NLG 129
           + G
Sbjct: 61  SAG 63

Length = 63

>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain

 Score = 43.6 bits (103), Expect = 4e-06
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 9/82 (10%)

Query: 153 LGPDGYRLVWQVDTYSGIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGL 211
           +      L W     +G I  Y +++R       W+ I +P          T SY +TGL
Sbjct: 11  VTSTSLTLSWSPPPGNGPITGYEVEYRPVNGGEEWKEITVPGT--------TTSYTLTGL 62

Query: 212 QLFTQYEASVLAKNRFGWSRPS 233
           +  T+YE  V A N  G   PS
Sbjct: 63  KPGTEYEVRVQAVNGAGEGPPS 84

Length = 84

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 43.6 bits (103), Expect = 4e-06
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 7/66 (10%)

Query: 71  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL---VRHIKD--TDFGNYMCQAS 125
           C+    PP K+EW +DG  + L    +        SLL   V H K    D G Y C A 
Sbjct: 21  CSAEGEPPPKIEWKKDGVLLNLVSD-ERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQ 79

Query: 126 N-NLGS 130
           N +LGS
Sbjct: 80  NDSLGS 85

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 42.0 bits (99), Expect = 9e-06
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 64  DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
                I C   A P   + W +    +T   RI +       SL + ++  +D G Y C 
Sbjct: 1   GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICI---WPDGSLEILNVTKSDEGKYTCF 57

Query: 124 ASNNLGSS 131
           A N  G +
Sbjct: 58  AENFFGKA 65

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 5/62 (8%)

Query: 66  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF---GNYMC 122
              + C+V   P   V WF++G  +     +    +      L   I +      G Y C
Sbjct: 3   SVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITL--TISNVTPEDSGTYTC 60

Query: 123 QA 124
             
Sbjct: 61  VV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 71  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
           C++  +P    +WFRDGT ++  G+ +  VSS++ +L +R     D G Y C A N  GS
Sbjct: 5   CHIDGHPRPTYQWFRDGTPLS-DGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGS 63

Query: 131 --SQQFIQLS 138
             S Q   LS
Sbjct: 64  VCSSQNFTLS 73

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 77  PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
           P   V W +DG  + L GR+ +  ++   SL++++ + +D G Y     N  G     I 
Sbjct: 12  PTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATIN 71

Query: 137 L 137
           +
Sbjct: 72  V 72

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 71  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-SLLVRHIKDTDFGNYMCQASNNLG 129
           C    NP   + W ++G       RI  +    +H SL++  +  +D GNY C   N  G
Sbjct: 16  CPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 75

Query: 130 SSQQFIQL 137
           S      L
Sbjct: 76  SINHTYHL 83

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 11/71 (15%)

Query: 71  CNVYANPPAKVEW-FRDGTA-------ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
           C+    PP  + W    G           L GRI +  +    SLL++H+ + D G Y+C
Sbjct: 5   CSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNG---SLLIKHVLEEDSGYYLC 61

Query: 123 QASNNLGSSQQ 133
           + SN++G+   
Sbjct: 62  KVSNDVGADAS 72

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 68  EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
           +I C+   +P   + W +DG  +T  G+   H+S E + L +R +   D G Y C A N 
Sbjct: 2   QIPCSAQGDPEPTITWNKDGVQVTESGK--FHISPEGY-LAIRDVGVADQGRYECVARNT 58

Query: 128 LGSSQQFIQLS 138
           +G +   + LS
Sbjct: 59  IGYASVSMVLS 69

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 154 GPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQL 213
                 L W+     GI  Y++ +R            +    S      + SY +TGL+ 
Sbjct: 13  TSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPS------STSYTLTGLKP 66

Query: 214 FTQYEASVLAKNRFGWS 230
            T+YE  V A N  G  
Sbjct: 67  GTEYEFRVRAVNGAGEG 83

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. Length = 83

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)

Query: 66  RAEIICNVYANPPAKVEWFRDGTAI-----TLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
           +  + C    +P  ++ W R          +L GRI +   +   SL ++ ++ TD G Y
Sbjct: 18  QITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRY 77

Query: 121 MCQASNNLGSSQQ 133
            C+ASN +G  QQ
Sbjct: 78  DCEASNRIGGDQQ 90

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 67  AEIICNVYANPPAKVEWFRDGTAI--TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 124
           A ++C    NP  ++ WF+D   +  T  GRI    S    +L + + +++D G Y C A
Sbjct: 1   ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG---ALQIENSEESDQGKYECVA 57

Query: 125 SNNLGS 130
           +N+ G+
Sbjct: 58  TNSAGT 63

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 23/92 (25%)

Query: 45  NVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK 104
           + I+P E S E +             C    +PP    W  +GT I             +
Sbjct: 10  DTIFPEE-SDEGKVSLN---------CRARGSPPPTYRWLMNGTEIDDE-------PDSR 52

Query: 105 HSL----LVRH--IKDTDFGNYMCQASNNLGS 130
           +SL    LV     K  D G Y C ASN +G+
Sbjct: 53  YSLVGGNLVISNPSKAKDAGRYQCLASNIVGT 84

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 7/79 (8%)

Query: 66  RAEIICNVYANPPAKVEWFR--DGTAITLG-----GRIDMHVSSEKHSLLVRHIKDTDFG 118
            A + C     P  ++ W R  DG   + G     GRI++     + SL ++ +K +D G
Sbjct: 18  AATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG 77

Query: 119 NYMCQASNNLGSSQQFIQL 137
            Y C+A++ +G  Q+ + L
Sbjct: 78  RYDCEAASRIGGHQKSMYL 96

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 69  IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
           + C+   NPP    W++DG  ++                   ++   D G Y C ASN  
Sbjct: 19  LTCSAPGNPPPNYTWYKDGVPLSSSQNG----------FFTPNVSAEDSGTYTCVASNGG 68

Query: 129 GSSQ 132
           G   
Sbjct: 69  GGKT 72

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 14/70 (20%)

Query: 67  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVR----HIKDTDF---GN 119
           A + C+    P  ++ W ++G  IT          S++ +L+      HI +  +   G 
Sbjct: 1   ASLRCHAEGIPLPRLTWLKNGMDIT-------PKLSKQLTLIANGSELHISNVRYEDTGA 53

Query: 120 YMCQASNNLG 129
           Y C A N  G
Sbjct: 54  YTCIAKNEAG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 6  LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSK 40
          L+Y+  +LD+   T+K  G + CIASN  GE+T+ 
Sbjct: 35 LVYDNGTLDILITTVKDTGSFTCIASNAAGEATAT 69

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 71  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
           C     P   + W + G+ +++  R   H+     +L +  +   D G Y CQA N +GS
Sbjct: 9   CEAQGYPQPVIAWTKGGSQLSVDRR---HLVLSSGTLRISRVALHDQGQYECQAVNIVGS 65

Query: 131 SQQFIQLS 138
            +   QL+
Sbjct: 66  QRTVAQLT 73

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 12/92 (13%)

Query: 54  VEKQWIHTAPDMRAEII--CNVYANPPAKVEWFRDGT------AITLGGRIDMHVSSEKH 105
           VE Q   TA ++  +I   C    +P   + W R  T        TL G I +   +   
Sbjct: 8   VENQ---TAMELEEQITLTCEASGDPIPSITW-RTSTRNISSEEKTLDGHIVVRSHARVS 63

Query: 106 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
           SL +++I+ TD G Y+C ASN +G   Q + L
Sbjct: 64  SLTLKYIQYTDAGEYLCTASNTIGQDSQSMYL 95

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 67  AEIICNVYANPPAKVEWFRDG-TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
           A + C    +P  ++ W +DG T         MHV  E     +  +K  D G Y C A 
Sbjct: 1   ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQ 60

Query: 126 NNLGS 130
           N  GS
Sbjct: 61  NTAGS 65

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 71  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
           C V   P   V+W ++G  +      D     ++H+L V  +  +D G Y C A N++G+
Sbjct: 6   CEVTGKPTPTVKWVKNGDMVIPS---DYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGN 62

Query: 131 SQQFIQL 137
            Q   QL
Sbjct: 63  VQAGAQL 69

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 35.6 bits (82), Expect = 0.003
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 76  NPPAKVEWFRDGTAITLGGRIDMHV--SSEKHS-LLVRHIKDTDFGNYMCQASNNLG 129
            P  + +WF+DG  +    +       + +K+S L +   K  D G Y C   N LG
Sbjct: 11  YPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILG 67

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSL 107
            P ++V      T+      + C+    P P  + W+R+G+     G +     S   +L
Sbjct: 1   KPVITVSPSPSVTS-GGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGL----GSSGSTL 55

Query: 108 LVRHIKDTDFGNYMCQASN 126
            +  +   D G Y C ASN
Sbjct: 56  TLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 57  QWIHTAPDMRAEII------CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVR 110
           +W+    D  A+I       C    NP     W ++G  +    RI++    E   L + 
Sbjct: 1   EWLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV----EAGDLRIT 56

Query: 111 HIKDTDFGNYMCQASNNLGS 130
            +  +D G Y C A N  G+
Sbjct: 57  KLSLSDSGMYQCVAENKHGT 76

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143279 cd05871, Ig_Semaphorin_classIII, Immunoglobulin (Ig)-like domain of class III semaphorin

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 77  PPAKVEWF--RDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
           P A V+W   R G       + +  +   +  LL+R ++ +D G Y C A  +
Sbjct: 23  PQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEH 75

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascular endothelial growth factor receptor (VEGF)-induced angiogenesis and induces microvascular permeability. This group also includes Sema3B, -C, -D, -E, -G. Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		99.97
KOG4221|consensus	1381		99.95
KOG4221|consensus	1381		99.91
KOG4194|consensus	873		99.9
PHA02785	326	IL-beta-binding protein; Provisional	99.88
KOG4222|consensus	1281		99.84
PHA02826	227	IL-1 receptor-like protein; Provisional	99.78
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.77
KOG4222|consensus	1281		99.76
PHA02785	326	IL-beta-binding protein; Provisional	99.74
KOG4194|consensus	873		99.73
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.72
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.71
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.71
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.69
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.68
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.68
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.65
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.65
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.64
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.64
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.64
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.63
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.63
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.61
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.61
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.61
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.6
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.6
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.6
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.59
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.59
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.59
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.59
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.59
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.58
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.58
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.57
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.57
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.57
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.57
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.57
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.56
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.56
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.55
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.55
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.54
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.54
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.53
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.53
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.52
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.52
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.51
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.51
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.5
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.5
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.49
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.49
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.49
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.48
PHA02826	227	IL-1 receptor-like protein; Provisional	99.48
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.47
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.47
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.46
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.46
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.45
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.45
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.45
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.44
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.44
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.44
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.44
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.44
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.43
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.43
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.42
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.42
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.41
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.4
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.4
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.4
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.39
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.39
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.39
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.37
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.37
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.33
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.32
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.32
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.3
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.29
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.29
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.28
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.26
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.22
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.21
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.18
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.17
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.16
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.13
smart00409	86	IG Immunoglobulin.	99.13
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.09
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.09
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.07
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.06
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.06
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.04
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.02
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.0
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.97
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.97
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	98.97
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.95
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.93
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.93
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.91
KOG0196|consensus	996		98.9
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.89
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	98.88
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	98.87
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	98.87
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.84
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.84
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.84
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.84
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.82
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.82
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	98.78
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.77
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	98.75
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.74
PHA03376	221	BARF1; Provisional	98.74
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.73
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.73
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.73
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.72
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	98.71
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.7
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.7
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.7
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.7
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.7
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	98.7
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	98.7
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.68
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.68
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	98.68
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.68
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.68
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	98.67
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.67
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.66
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.66
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	98.66
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.65
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.61
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.61
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.6
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.59
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.58
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	98.58
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.57
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	98.57
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.56
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.55
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.54
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.54
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.54
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.53
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	98.53
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.53
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	98.51
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	98.5
KOG3515|consensus	741		98.49
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.48
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.48
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.48
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.48
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.48
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.47
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.47
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.47
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.46
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	98.46
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.46
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.46
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.45
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.44
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.43
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.43
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.43
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.43
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.43
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.43
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.42
KOG3515|consensus	741		98.42
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	98.42
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.42
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.41
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.41
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.41
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.4
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.39
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.39
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.39
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.38
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.38
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.36
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.36
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.35
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.35
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.34
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.34
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.34
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.33
PHA03376	221	BARF1; Provisional	98.33
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.32
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.32
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.31
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.31
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.31
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.3
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.3
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.3
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.29
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.29
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.28
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.27
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.27
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.27
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.27
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.25
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.25
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.25
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.24
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.24
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.24
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.24
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.23
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.22
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.22
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.21
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.21
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.2
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.2
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.18
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.16
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.16
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.16
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.15
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.14
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.13
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.12
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.1
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.09
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.08
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	98.07
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.06
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.06
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.05
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.05
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.05
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.04
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.02
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.01
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.01
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.01
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.0
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.98
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.97
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	97.95
smart00409	86	IG Immunoglobulin.	97.95
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	97.95
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.95
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	97.94
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.93
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	97.93
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.93
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.92
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	97.91
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.91
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.91
PHA02633	63	hypothetical protein; Provisional	97.9
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	97.9
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.88
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	97.84
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.82
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	97.79
PHA03273	486	envelope glycoprotein C; Provisional	97.78
smart00408	63	IGc2 Immunoglobulin C-2 Type.	97.78
KOG4367|consensus	699		97.77
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.77
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	97.75
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	97.75
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	97.74
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.73
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.71
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.66
PHA03271	490	envelope glycoprotein C; Provisional	97.66
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	97.63
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.63
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	97.63
smart00407	75	IGc1 Immunoglobulin C-Type.	97.62
PHA03269	566	envelope glycoprotein C; Provisional	97.62
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.59
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.56
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	97.55
smart00406	81	IGv Immunoglobulin V-Type.	97.52
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.47
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	97.47
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.4
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	97.39
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.34
PF00047	64	ig: Immunoglobulin domain The Prosite family only	97.33
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.29
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.27
PHA03270	466	envelope glycoprotein C; Provisional	97.24
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.22
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.18
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.18
smart00406	81	IGv Immunoglobulin V-Type.	97.17
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.16
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.15
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.14
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.14
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.13
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.11
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.11
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	97.05
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.05
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	96.91
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	96.89
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.85
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	96.8
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	96.8
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	96.79
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	96.71
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	96.51
PHA02633	63	hypothetical protein; Provisional	96.48
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	96.4
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.37
PHA02982	251	hypothetical protein; Provisional	96.37
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	96.3
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.3
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	96.19
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.13
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	96.12
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.09
KOG0196|consensus	996		96.04
KOG4802|consensus	516		96.04
PHA02982	251	hypothetical protein; Provisional	96.02
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	95.79
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	95.6
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.52
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	95.27
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	95.08
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	94.72
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.71
KOG1480|consensus	909		94.45
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	94.36
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	94.27
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	94.13
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	93.98
KOG4802|consensus	516		93.77
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	93.73
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	93.53
PHA03042	286	CD47-like protein; Provisional	93.5
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	93.24
KOG4597|consensus	560		93.05
KOG0613|consensus	1205		92.06
PHA03286	492	envelope glycoprotein E; Provisional	92.06
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	91.96
KOG0613|consensus	1205		91.83
PHA03283	542	envelope glycoprotein E; Provisional	91.67
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	91.62
PHA02865	338	MHC-like TNF binding protein; Provisional	91.37
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	91.32
PHA02914	500	Immunoglobulin-like domain protein; Provisional	91.16
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	91.06
PF09294	106	Interfer-bind: Interferon-alpha/beta receptor, fib	90.82
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	90.41
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	90.1
KOG1480|consensus	909		88.75
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	88.34
KOG4258|consensus	1025		87.9
PHA03281	642	envelope glycoprotein E; Provisional	87.47
PHA03052	69	Hypothetical protein; Provisional	87.21
COG5475	60	Uncharacterized small protein [Function unknown]	87.15
PHA03282	540	envelope glycoprotein E; Provisional	87.08
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	86.01
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	85.74
PLN02533	427	probable purple acid phosphatase	85.55
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	84.64
PHA02914	500	Immunoglobulin-like domain protein; Provisional	84.12
KOG4258|consensus	1025		84.11
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	83.66
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	83.1
KOG4152|consensus	830		82.82
PHA03269	566	envelope glycoprotein C; Provisional	82.16
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	81.28
smart00407	75	IGc1 Immunoglobulin C-Type.	81.04

>KOG3513|consensus

Probab=100.00  E-value=1.6e-31  Score=216.90  Aligned_cols=237  Identities=22%  Similarity=0.386  Sum_probs=191.1

Q ss_pred             CcceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCC--
Q psy12131          1 EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP--   78 (245)
Q Consensus         1 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~--   78 (245)
                      ++|+.+..++. |.|.+++.+|+|.|+|.|.|..|. ...+..|.|++++.+...|....+..|+++.|+|.+.-.+.  
T Consensus       470 ~~r~~i~edGt-L~I~n~t~~DaG~YtC~A~N~~G~-a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld  547 (1051)
T KOG3513|consen  470 SGRIRILEDGT-LEISNVTRSDAGKYTCVAENKLGK-AESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLD  547 (1051)
T ss_pred             CceEEECCCCc-EEecccCcccCcEEEEEEEcccCc-cceEEEEEEecCceEEeccchhhhccCceEEEEeecccCCCcc
Confidence            57899988776 999999999999999999999999 79999999999999999998899999999999999975554  


Q ss_pred             CeEEEEECCEEeccC---CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE--EEEEEecCCCCccccCcccc
Q psy12131         79 AKVEWFRDGTAITLG---GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ--FIQLSGIPNIPVFQKSSRRL  153 (245)
Q Consensus        79 ~~~~w~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~--~~~~~~~~~~p~~~~~~~~~  153 (245)
                      ..+.|.++|..+...   .++.+........|+|.+++..|.|.|.|+++....+...  .+.+...|.||..+.. ...
T Consensus       548 ~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP~~v~~-~~i  626 (1051)
T KOG3513|consen  548 ITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPPPDVHV-DDI  626 (1051)
T ss_pred             eEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCCCceeE-eee
Confidence            478999999976543   3444433322357999999999999999999986655444  4556666777763332 346


Q ss_pred             CCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        154 GPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       154 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      ...++.|+|.+  +.++|+.+|.++++... ...|..+....... .++   .+..+.+|.|...|+|||.|.|..|.|+
T Consensus       627 ~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~-~~~W~~v~~vp~~~-~~~---~sa~vv~L~Pwv~YeFRV~AvN~iG~ge  701 (1051)
T KOG3513|consen  627 SDTTARLSWSPGSDNNSPIEKYTIQFRTPF-PGKWKAVTTVPGNI-TGD---ESATVVNLSPWVEYEFRVVAVNSIGIGE  701 (1051)
T ss_pred             ccceEEEEeecCCCCCCCceEEeEEecCCC-CCcceEeeECCCcc-cCc---cceeEEccCCCcceEEEEEEEcccccCC
Confidence            77899999999  55589999999999986 88999888544432 221   2366789999999999999999999999


Q ss_pred             CCcc-eEEecCCCCC
Q psy12131        232 PSKA-YVFATEGAET  245 (245)
Q Consensus       232 ~s~~-~~~~t~~~~~  245 (245)
                      +|.. -.++|.+++|
T Consensus       702 PS~pS~~~rT~ea~P  716 (1051)
T KOG3513|consen  702 PSPPSEKVRTPEAAP  716 (1051)
T ss_pred             CCCCccceecCCCCC
Confidence            9984 6778877754

>KOG3513|consensus

Probab=99.97  E-value=6.6e-28  Score=196.08  Aligned_cols=224  Identities=19%  Similarity=0.294  Sum_probs=181.5

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeE
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKV   81 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~   81 (245)
                      +|+.....+..|.|.+++.+|+|.|+|.|.|..|. ....+.|.|..+|.+...+....+..|.++.+.|.+.|.|.|.+
T Consensus       285 ~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~-~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v  363 (1051)
T KOG3513|consen  285 RRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGS-ATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTV  363 (1051)
T ss_pred             cceeeeccccEEEecccCcCCCeEEEEEEeccccc-ceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCce
Confidence            46777788888999999999999999999999996 78999999999999999999999999999999999999999999


Q ss_pred             EEEECCEEeccCCc---EEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCccccC-----cccc
Q psy12131         82 EWFRDGTAITLGGR---IDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKS-----SRRL  153 (245)
Q Consensus        82 ~w~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~~-----~~~~  153 (245)
                      .|++|+.++....+   ..+.    ...|.|.+++..|.|.|.|.|.|..|...+.+.|.+...+|.+...     ....
T Consensus       364 ~WlkNg~pl~~~~r~~~~~i~----~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~  439 (1051)
T KOG3513|consen  364 KWLKNGEPLEPAERDPRYKID----DGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAV  439 (1051)
T ss_pred             EEeeCCeecCccCCCcceEEe----CCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEE
Confidence            99999999886655   5553    3479999999999999999999999999999999988776665543     2346


Q ss_pred             CCCeeEEEEEeCCCCCceEEEEEEEeecC-CCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12131        154 GPDGYRLVWQVDTYSGIIQYLLKFREREE-LTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP  232 (245)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~  232 (245)
                      .+..+.|.|++.+.+..   .+.|..+.. -.+-..+.+.+.         -.+.|.++...+.+.|.|.|.|.+|....
T Consensus       440 ~g~~v~i~C~~~asP~p---~~~W~k~~~~~~~~~r~~i~ed---------GtL~I~n~t~~DaG~YtC~A~N~~G~a~~  507 (1051)
T KOG3513|consen  440 VGGTVTIDCKPFASPKP---KVSWLKGGEKLLQSGRIRILED---------GTLEISNVTRSDAGKYTCVAENKLGKAES  507 (1051)
T ss_pred             eCCeEEEeeccCCCCcc---eEEEEcCCcccccCceEEECCC---------CcEEecccCcccCcEEEEEEEcccCccce
Confidence            78899999999665422   233333321 111112333333         45889999999999999999999999988


Q ss_pred             CcceEEecCC
Q psy12131        233 SKAYVFATEG  242 (245)
Q Consensus       233 s~~~~~~t~~  242 (245)
                      ...+.|+...
T Consensus       508 ~~~L~Vkd~t  517 (1051)
T KOG3513|consen  508 TGNLIVKDAT  517 (1051)
T ss_pred             EEEEEEecCc
Confidence            8877776543

>KOG4221|consensus

Probab=99.95  E-value=1.7e-26  Score=188.04  Aligned_cols=228  Identities=23%  Similarity=0.290  Sum_probs=178.6

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEE
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE   82 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~   82 (245)
                      ||.+.. +++|.|++++..|+|.|+|+|.|.... ..+.+.|+|..+|.+...+....+.++..+.+.|.+.|.|.|.+.
T Consensus       284 rivl~g-~~slliS~a~~~dSg~YtC~Atn~~D~-idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~  361 (1381)
T KOG4221|consen  284 RIVLVG-GSSLLISNATDDDSGKYTCRATNTNDS-IDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVR  361 (1381)
T ss_pred             EEEEec-ccceEEeccccccCceEEEEecCCCcc-cccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEE
Confidence            444443 455999999999999999999996555 577788899999999999988888899999999999999999999


Q ss_pred             EEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCcc-----c-----cCccc
Q psy12131         83 WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVF-----Q-----KSSRR  152 (245)
Q Consensus        83 w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~-----~-----~~~~~  152 (245)
                      |+++|..+.....+.+...+   .+.|..+...|.|.|.|.+.|..|.......+.+.+.+...     .     .....
T Consensus       362 w~kNgd~~ipsdy~ki~~~~---~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~  438 (1381)
T KOG4221|consen  362 WYKNGDRIIPSDYFKIVGGG---NLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANL  438 (1381)
T ss_pred             EEecCcccCcccceEecCCC---CcEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceeccc
Confidence            99999988877777775543   28888888899999999999999988877766554432110     0     01223


Q ss_pred             cCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        153 LGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       153 ~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      .....+.++|..  ....++..|.+.|+..  ...|..+......       ....++.+|.+.+.|.|+|.|.|..|.+
T Consensus       439 ~~srfi~~tw~~p~~~~g~i~~~~v~~~~~--~~~rer~~~tss~-------g~~~tv~nl~p~t~Y~~rv~A~n~~g~g  509 (1381)
T KOG4221|consen  439 VSSRFIQLTWRPPAQISGNISTYTVFYKVE--GDVRERLQNTSSP-------GIQVTVQNLSPLTMYFFRVRAKNEAGSG  509 (1381)
T ss_pred             ccceeEEEeecCccccCCCcceEEEEEecC--CchhhhheeccCC-------ceEEEeeecccceeEEEEEeccCcccCC
Confidence            455678888886  2345777888777774  4556544332221       1788999999999999999999999999


Q ss_pred             CCCcceEEecCCCC
Q psy12131        231 RPSKAYVFATEGAE  244 (245)
Q Consensus       231 ~~s~~~~~~t~~~~  244 (245)
                      ..|..+.|++++++
T Consensus       510 ~sS~pLkV~t~pEg  523 (1381)
T KOG4221|consen  510 ESSAPLKVTTQPEG  523 (1381)
T ss_pred             ccCCceEEecCCCC
Confidence            99999999999864

>KOG4221|consensus

Probab=99.91  E-value=6.7e-23  Score=167.42  Aligned_cols=226  Identities=17%  Similarity=0.246  Sum_probs=162.5

Q ss_pred             CcceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCe------EEeecceEEecCCCeEEEEEEEe
Q psy12131          1 EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE------VSVEKQWIHTAPDMRAEIICNVY   74 (245)
Q Consensus         1 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~------~~~~~~~~~~~~g~~~~l~C~~~   74 (245)
                      |+|+....++. |.|.+++..|.|.|+|.+.+......+..+.|+|...|.      |...+....+..|+.+.|.|.+.
T Consensus       184 ~~r~i~lpsG~-L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs  262 (1381)
T KOG4221|consen  184 DSRVIVLPSGA-LEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVS  262 (1381)
T ss_pred             CCcEEEcCCCc-EEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEec
Confidence            45777777766 999999999999999999987665567888888873333      34456666788999999999999


Q ss_pred             ecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe--CCceeEEEEEEEecCCCCccccCccc
Q psy12131         75 ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN--NLGSSQQFIQLSGIPNIPVFQKSSRR  152 (245)
Q Consensus        75 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n--~~g~~~~~~~~~~~~~~p~~~~~~~~  152 (245)
                      +.|.|.+.|.+++..+.-++ +.+... ..+.|.|.+++..|.|.|+|.|.|  +.+...+.++|...|.-+........
T Consensus       263 ~~p~p~v~Wlrng~~i~~ds-~rivl~-g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A  340 (1381)
T KOG4221|consen  263 GVPKPSVKWLRNGEKISVDS-YRIVLV-GGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVA  340 (1381)
T ss_pred             CCCCCceEEeeCCeeeeecc-eEEEEe-cccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceee
Confidence            99999999999999887665 332222 345799999999999999999999  44555666666655443333333444


Q ss_pred             cCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        153 LGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      .++..+.+.|.+.+. |+..+. ||+...  ....|.++..  ..        . +.|.++-..+...|+|.|+|..|..
T Consensus       341 ~e~~die~ec~~~g~-p~p~v~-w~kNgd~~ipsdy~ki~~--~~--------~-lrIlgi~~sdeg~yQcvaen~~G~a  407 (1381)
T KOG4221|consen  341 HESMDIEFECPVSGK-PIPTVR-WYKNGDRIIPSDYFKIVG--GG--------N-LRILGIVKSDEGFYQCVAENDAGSA  407 (1381)
T ss_pred             eeccceeEeCCCCCC-CcceEE-EEecCcccCcccceEecC--CC--------C-cEEEEEecccchhhhhhhccCcccc
Confidence            567788888888776 665555 666655  3455554422  21        1 4444544555555688899999998


Q ss_pred             CCCcceEEecCC
Q psy12131        231 RPSKAYVFATEG  242 (245)
Q Consensus       231 ~~s~~~~~~t~~  242 (245)
                      ..++.+.+-..+
T Consensus       408 ~a~a~l~vv~~p  419 (1381)
T KOG4221|consen  408 QAAAQLEVVPQP  419 (1381)
T ss_pred             cchhhheeccCC
Confidence            887777665554

>KOG4194|consensus

Probab=99.90  E-value=1.7e-22  Score=155.13  Aligned_cols=156  Identities=21%  Similarity=0.328  Sum_probs=130.2

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEE-
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTA-   89 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~-   89 (245)
                      +.|.+.|++..|+|.|+|.+.|..|...+..+.|+|...|.+...|.......|+.+.+.|.+.|.|.|+|.|-++|.. 
T Consensus       574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtd  653 (873)
T KOG4194|consen  574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTD  653 (873)
T ss_pred             heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCC
Confidence            4599999999999999999999999988889999999999999999999999999999999999999999999997654 


Q ss_pred             eccC--CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCc--cccCccccCCCeeEEEEEeC
Q psy12131         90 ITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPV--FQKSSRRLGPDGYRLVWQVD  165 (245)
Q Consensus        90 ~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~~l~~~~~  165 (245)
                      .+..  .+..+..  ....+.|.++..+|.|.|+|+|.|..|..+...++.+...|..  ......+..++++.|.|..+
T Consensus       654 FPAA~eRRl~Vmp--edd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~  731 (873)
T KOG4194|consen  654 FPAARERRLHVMP--EDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAE  731 (873)
T ss_pred             CchhhhheeeecC--CCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecC
Confidence            5443  3444443  3347999999999999999999999999888887777644332  22224467899999999996


Q ss_pred             CCC
Q psy12131        166 TYS  168 (245)
Q Consensus       166 ~~~  168 (245)
                      +.+
T Consensus       732 ~~~  734 (873)
T KOG4194|consen  732 GAP  734 (873)
T ss_pred             CCC
Confidence            654

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.88  E-value=1.7e-19  Score=135.83  Aligned_cols=217  Identities=13%  Similarity=0.122  Sum_probs=134.7

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec--CCeEEeecceEEecCCCeEEEEEE-----EeecCCCe
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY--PPEVSVEKQWIHTAPDMRAEIICN-----VYANPPAK   80 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~-----~~~~~~~~   80 (245)
                      .++..|.|.++..+|+|.|+|.+.|..|. ....+.|+|..  +|.+...+....+.+|..+.+.|.     ..+.+.+.
T Consensus        79 ~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~-~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~  157 (326)
T PHA02785         79 DNGSNMLILNPTQSDSGIYICITKNETYC-DMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNAD  157 (326)
T ss_pred             cCCceEEEcccCcccCeEEEEEEECCCcc-eEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCce
Confidence            34556999999999999999999998876 56677777754  333322222334668999999997     24568889


Q ss_pred             EEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE----EEEEEec--CCCCcccc--Cccc
Q psy12131         81 VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ----FIQLSGI--PNIPVFQK--SSRR  152 (245)
Q Consensus        81 ~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~----~~~~~~~--~~~p~~~~--~~~~  152 (245)
                      +.|+++.. + ...++...   ..+.|.|.++..+|.|.|+|.+.|..|....    .+.+.+.  ..||.+..  ....
T Consensus       158 i~W~k~~~-~-~~~r~~~~---~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~  232 (326)
T PHA02785        158 IIWSGHRR-L-RNKRLKQR---TPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVT  232 (326)
T ss_pred             EEEccCCc-c-CCcceEec---CCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEe
Confidence            99987543 2 22333322   2347999999999999999999998775433    2333332  23443221  1223


Q ss_pred             cCCCeeEEEEEeCCCCCce-EEEEEEEeec---CCC--CeEEEeeCCCCC--CCcceeeeEEEecCCCCCceEEEEEEEE
Q psy12131        153 LGPDGYRLVWQVDTYSGII-QYLLKFRERE---ELT--PWRNIVIPSDGS--LAGPIYTQSYNITGLQLFTQYEASVLAK  224 (245)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~---~~~--~~~~~~~~~~~~--~~~~~~~~~~~i~~l~~~~~y~~~v~a~  224 (245)
                      ..|..+.|.|.+.+.++.. .-..|+++..   ..+  .-..+.......  .........+.|.++...+.+.|.|.|.
T Consensus       233 ~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~  312 (326)
T PHA02785        233 SIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAF  312 (326)
T ss_pred             cCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEE
Confidence            4588999999997654321 1122333322   000  001111111000  0011123678999999999999999999


Q ss_pred             ecCCCC
Q psy12131        225 NRFGWS  230 (245)
Q Consensus       225 N~~G~~  230 (245)
                      |..|..
T Consensus       313 n~~~~~  318 (326)
T PHA02785        313 TIPSIS  318 (326)
T ss_pred             eccCce
Confidence            988543

>KOG4222|consensus

Probab=99.84  E-value=8.8e-20  Score=148.69  Aligned_cols=221  Identities=20%  Similarity=0.220  Sum_probs=160.8

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTA   89 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~   89 (245)
                      +..|.|.+++++|+|.|.|.+.|..|...+....|.|.++|.+...+....+..|..+.+.|.+.|.|.|.+.|.+++..
T Consensus       186 gG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~  265 (1281)
T KOG4222|consen  186 GGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPS  265 (1281)
T ss_pred             CCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCC
Confidence            44599999999999999999999999988899999999999999999999999999999999999999999999997776


Q ss_pred             eccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCccccC---ccccCCCeeEEEEEeCC
Q psy12131         90 ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDT  166 (245)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~l~~~~~~  166 (245)
                      ++.. ++.+..  .+.++.|..+.+.|.|.|.|.+.|..|.......+.++. +|.|.+.   ..+.-+..++|.|+..+
T Consensus       266 ~P~~-ry~i~~--d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~a-pP~f~kkp~dq~v~lg~~vt~pc~~~g  341 (1281)
T KOG4222|consen  266 LPRS-RYSILD--DTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQA-PPSFGKKPRDQKVALGGTVTFPCETLG  341 (1281)
T ss_pred             CCcc-ceeeee--ccccccccccCCCcccceeeeccccccccccccceEEec-CcccccccCccccccCceEEeeeecCC
Confidence            6654 333332  234799999999999999999999999888777766653 3333322   33456779999999977


Q ss_pred             CCC-ceEEEEEEEeec-CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEe
Q psy12131        167 YSG-IIQYLLKFRERE-ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       167 ~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~  239 (245)
                      +++ +..|.   +... .-.-|..  -+..+....-.-.-.++++++...+...|-|.+.|..|.+-.-..+.++
T Consensus       342 nP~PavfW~---keg~q~llf~~~--p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt  411 (1281)
T KOG4222|consen  342 NPPPAVFWL---KEGSQDLLFSAS--PPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQT  411 (1281)
T ss_pred             CCCcceEEe---ccCcceecccCC--CCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEE
Confidence            754 33232   2221 0000100  0000000000001367888998888888888899999987665544443

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.78  E-value=9.9e-18  Score=118.99  Aligned_cols=110  Identities=16%  Similarity=0.261  Sum_probs=88.1

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEee-----cCCCeEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA-----NPPAKVEWF   84 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-----~~~~~~~w~   84 (245)
                      +..|.|.+++.+|+|.|+|.|.|..+. ....+.|.|..++      ....+.+|+.+.|.|.+.+     .|.|.+.|+
T Consensus        97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~-~~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~Wy  169 (227)
T PHA02826         97 SENLWIGNVINIDEGIYICTISSGNIC-EESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWY  169 (227)
T ss_pred             CCeEEECCCChHHCEEEEEEEEECCcc-eEEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEE
Confidence            457999999999999999999997766 6777778875432      1234568999999999853     457899999


Q ss_pred             ECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         85 RDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +++..+....++.+..  ....|.|.++..+|.|.|+|.+....
T Consensus       170 Kng~~l~~~~r~~~~~--~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        170 KNGNIVLYTDRIQLRN--NNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             ECCEECCCCCCEEEeC--CCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            9999987666655432  34589999999999999999999864

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.77  E-value=3.1e-17  Score=101.57  Aligned_cols=95  Identities=21%  Similarity=0.384  Sum_probs=81.8

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      |.|...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+......+.|.|.++...|.|.|+|.+.|..|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence            45666677788999999999999999999999999999999877777777666778999999999999999999999999


Q ss_pred             eeEEEEEEEe--cCCCC
Q psy12131        130 SSQQFIQLSG--IPNIP  144 (245)
Q Consensus       130 ~~~~~~~~~~--~~~~p  144 (245)
                      .....+.|.+  .|.||
T Consensus        81 ~~~~~~~l~V~~~P~pP   97 (98)
T cd05762          81 SRQAQVNLTVVDKPDPP   97 (98)
T ss_pred             ceeEEEEEEEecCCCCC
Confidence            9888777665  45554

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>KOG4222|consensus

Probab=99.76  E-value=4e-18  Score=139.23  Aligned_cols=229  Identities=23%  Similarity=0.310  Sum_probs=163.9

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe---c---CCeEEeecceEEecCCCeEEEEEEEee
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI---Y---PPEVSVEKQWIHTAPDMRAEIICNVYA   75 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~---~p~~~~~~~~~~~~~g~~~~l~C~~~~   75 (245)
                      +|-++...+ +|+|.+++..|.|.|.|...+..+....+.+..++.   .   +|.+...+.......+....+.|.+.+
T Consensus       368 ~r~svs~~g-~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg  446 (1281)
T KOG4222|consen  368 GRGSVSPTG-TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATG  446 (1281)
T ss_pred             ccceecCCC-CcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhC
Confidence            345556555 699999999999999999998887754444333332   1   233333444555667889999999999


Q ss_pred             cCCCeEEEEECCEEeccCC-cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecC-------------
Q psy12131         76 NPPAKVEWFRDGTAITLGG-RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIP-------------  141 (245)
Q Consensus        76 ~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~-------------  141 (245)
                      .|.+.+.|++++..+.... +..+.   ....+++..+...|.|.|+|.+.+..|...-...+.+..             
T Consensus       447 ~P~p~i~wl~dg~~v~~~d~~~s~~---~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~  523 (1281)
T KOG4222|consen  447 APTPNISWLKDGCNVMNPDSRISQQ---EIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDP  523 (1281)
T ss_pred             CCCCCchhhhcccccccCCccccee---eeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCCh
Confidence            9999999999987765443 22222   235799999999999999999999988877666655421             


Q ss_pred             ----CCCccccCccccCCCeeEEEEEe---CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCC
Q psy12131        142 ----NIPVFQKSSRRLGPDGYRLVWQV---DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF  214 (245)
Q Consensus       142 ----~~p~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~  214 (245)
                          .+| .......+....++|.|..   .+..|+..|++++-.......|.+...-...        ..+.|.+|.+.
T Consensus       524 S~~pS~p-~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~v~~--------t~~~I~gL~P~  594 (1281)
T KOG4222|consen  524 SALPSPP-GTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGRVKT--------TTYAIRGLKPN  594 (1281)
T ss_pred             hhCCCCC-CCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhccccccccccccc--------ceeeecCcCcc
Confidence                111 1122345778899999998   2346888898877554446677665433332        77899999999


Q ss_pred             ceEEEEEEEEecCCCCCCCcc-eEEecCCC
Q psy12131        215 TQYEASVLAKNRFGWSRPSKA-YVFATEGA  243 (245)
Q Consensus       215 ~~y~~~v~a~N~~G~~~~s~~-~~~~t~~~  243 (245)
                      ..|.|.|+|.|..|.+.++.. -.++|.++
T Consensus       595 ~sylf~vRa~n~~Gis~Ps~~S~~vrta~a  624 (1281)
T KOG4222|consen  595 LSYLFLVRAENEQGISDPSTSSDPVRTAPA  624 (1281)
T ss_pred             ceeeeeeeccccccccCCcccCCccccCCC
Confidence            999999999999998887763 34444443

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.74  E-value=3.5e-16  Score=117.95  Aligned_cols=127  Identities=20%  Similarity=0.325  Sum_probs=91.9

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCc---eeeEEEEEEec---CCeEEeecceEEecCCCeEEEEEEEeec
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES---TSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYAN   76 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~---~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~   76 (245)
                      |+.... ++.|.|.+++.+|+|.|+|.+.|..|..   ....+.|.|..   +|.+ ..|....+..|..+.|.|.+.|.
T Consensus       170 r~~~~~-~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~  247 (326)
T PHA02785        170 RLKQRT-PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVSLR  247 (326)
T ss_pred             ceEecC-CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEECC
Confidence            444443 3469999999999999999999987763   13345566652   4443 33456677889999999999988


Q ss_pred             CCC---eEEEEECCEEeccCC-----cEEEEec--------CceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131         77 PPA---KVEWFRDGTAITLGG-----RIDMHVS--------SEKHSLLVRHIKDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus        77 ~~~---~~~w~~~~~~~~~~~-----~~~~~~~--------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  131 (245)
                      |.+   .+.|++++..+....     ++.....        .....|.|.++..+|.|.|.|.|.|..|..
T Consensus       248 P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~  318 (326)
T PHA02785        248 PPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS  318 (326)
T ss_pred             CCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence            864   899999998775421     2222110        013579999999999999999999987543

>KOG4194|consensus

Probab=99.73  E-value=4.7e-17  Score=125.65  Aligned_cols=142  Identities=22%  Similarity=0.374  Sum_probs=119.8

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCC-Ce
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP-AK   80 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~   80 (245)
                      +|+.+-++...+.|.|++.+|+|.|+|.|.|.+|. .++.+.|+|.+.|.+..+-....+..|+.+.|.|.+.+.|. |+
T Consensus       660 RRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~-isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr  738 (873)
T KOG4194|consen  660 RRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQ-ISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPR  738 (873)
T ss_pred             heeeecCCCCEEEEecccccccceeEEeeeccccc-eeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCcc
Confidence            57777888888999999999999999999999999 79999999999999999888888999999999999999888 99


Q ss_pred             EEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCcc
Q psy12131         81 VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVF  146 (245)
Q Consensus        81 ~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~  146 (245)
                      +.|++...++....+...  ......+.+.+...+|.|.|+|...|..|.....+.+.+.+.+...
T Consensus       739 ~~W~k~d~pil~t~rh~f--~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~~~  802 (873)
T KOG4194|consen  739 LEWFKEDKPILITERHTF--PDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKKCR  802 (873)
T ss_pred             ccccCCCCceEEeecccC--CCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCCcc
Confidence            999998887765543322  2234568888888999999999999999987777776665554433

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.72  E-value=4.3e-16  Score=95.76  Aligned_cols=89  Identities=21%  Similarity=0.421  Sum_probs=78.4

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ||.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+......+.|.|.++..+|.|.|.|.+.|..
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~   82 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSE   82 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCC
Confidence            67777778788899999999999999999999999999998877667777666567899999999999999999999999


Q ss_pred             ceeEEEEEE
Q psy12131        129 GSSQQFIQL  137 (245)
Q Consensus       129 g~~~~~~~~  137 (245)
                      |.....+.|
T Consensus        83 G~~~~~~~l   91 (92)
T cd05747          83 GKQEAQFTL   91 (92)
T ss_pred             CCEeEEEEe
Confidence            988877765

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.71  E-value=3.1e-16  Score=95.30  Aligned_cols=87  Identities=20%  Similarity=0.316  Sum_probs=73.0

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++..    ....|.|.++..+|.|.|.|.|.|..
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A~N~~   76 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM----SGAVLKIFNIQPEDEGTYECEAENIK   76 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec----CCCEEEECcCChhhCEEEEEEEEcCC
Confidence            57777777788889999999999999999999999999877665433322    23479999999999999999999999


Q ss_pred             ceeEEEEEEEe
Q psy12131        129 GSSQQFIQLSG  139 (245)
Q Consensus       129 g~~~~~~~~~~  139 (245)
                      |.....+.|.+
T Consensus        77 G~~~~~~~l~V   87 (88)
T cd05851          77 GKDKHQARVYV   87 (88)
T ss_pred             CceEEEEEEEE
Confidence            99888877765

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.71  E-value=1.5e-15  Score=93.31  Aligned_cols=90  Identities=24%  Similarity=0.517  Sum_probs=82.2

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      |.|...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+........|.|.++..+|.|.|+|.+.|..|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g   80 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG   80 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence            56777788889999999999999999999999999999999998888888777899999999999999999999999999


Q ss_pred             eeEEEEEEEe
Q psy12131        130 SSQQFIQLSG  139 (245)
Q Consensus       130 ~~~~~~~~~~  139 (245)
                      .....+.|.+
T Consensus        81 ~~~~~~~l~V   90 (90)
T PF07679_consen   81 EATASVNLTV   90 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEC
Confidence            9888887754

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.69  E-value=1.9e-15  Score=92.81  Aligned_cols=84  Identities=19%  Similarity=0.422  Sum_probs=71.8

Q ss_pred             cceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEec-CceeEEEEccCCCCCCeEEEEEEEeCCceeEEE
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF  134 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  134 (245)
                      |..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+... +....|.|.++..+|.|.|+|.+.|..|.....
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   87 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVD   87 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEE
Confidence            4456788999999999999999999999999998887776666543 345689999999999999999999999998888


Q ss_pred             EEEEe
Q psy12131        135 IQLSG  139 (245)
Q Consensus       135 ~~~~~  139 (245)
                      +.+.+
T Consensus        88 ~~v~v   92 (92)
T cd05737          88 VTVSV   92 (92)
T ss_pred             EEEeC
Confidence            87753

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.68  E-value=3.2e-15  Score=90.28  Aligned_cols=82  Identities=18%  Similarity=0.299  Sum_probs=70.8

Q ss_pred             eEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC-CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      .+.+..|+.+.|.|.+.|.|.|.+.|++++.++... .++.+......+.|.|.++..+|.|.|+|.|.|..|.....+.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            456789999999999999999999999999988753 3566665556789999999999999999999999999888887


Q ss_pred             EEe
Q psy12131        137 LSG  139 (245)
Q Consensus       137 ~~~  139 (245)
                      |.+
T Consensus        84 l~V   86 (86)
T cd05894          84 VKV   86 (86)
T ss_pred             EEC
Confidence            753

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.68  E-value=5.8e-15  Score=97.98  Aligned_cols=117  Identities=20%  Similarity=0.311  Sum_probs=83.2

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeec-CC-CeEEEEECCE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN-PP-AKVEWFRDGT   88 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~w~~~~~   88 (245)
                      ++|.|.+++..|+|.|+|.+.+..+. ....+.|.|..+|.+...+.......|..+.|.|.+.|. |. +.+.|++++.
T Consensus         1 asL~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~   79 (139)
T cd05771           1 ASLTLPGLTVHDEGTYICSVSTPPHQ-AQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP   79 (139)
T ss_pred             CeEEECCCCHHHCEEEEEEEEccCcc-eeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence            36999999999999999999987777 688899999999998777665555578899999999986 43 4899999875


Q ss_pred             Eecc-----CC-cE--EEEe-cC---ceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         89 AITL-----GG-RI--DMHV-SS---EKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        89 ~~~~-----~~-~~--~~~~-~~---~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ....     .. ..  .... ++   -.+.|.+..-...+...|.|.+.+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          80 GDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             CCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            3111     11 00  0111 11   12355555444445668999998754

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.65  E-value=1e-14  Score=89.29  Aligned_cols=83  Identities=19%  Similarity=0.282  Sum_probs=68.6

Q ss_pred             cceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI  135 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  135 (245)
                      +....+..|+.+.|.|.+.|.|.|.+.|++++..+................|.|.++...|.|.|.|.|.|..|.....+
T Consensus         7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~   86 (90)
T cd04972           7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV   86 (90)
T ss_pred             CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence            44555889999999999999999999999999877654443333334466899999999999999999999999988877


Q ss_pred             EEE
Q psy12131        136 QLS  138 (245)
Q Consensus       136 ~~~  138 (245)
                      .|.
T Consensus        87 ~L~   89 (90)
T cd04972          87 QVT   89 (90)
T ss_pred             EEe
Confidence            765

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.65  E-value=2.9e-15  Score=88.09  Aligned_cols=74  Identities=23%  Similarity=0.457  Sum_probs=63.1

Q ss_pred             CCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      +|+.+.|.|.+.|.|.|.+.|++++..+....+..+..   ...|.|.++..+|.|.|+|.|.|..|.....+.|.+
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLS---SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEcc---CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            58899999999999999999999999887665544432   347999999999999999999999999888777653

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.64  E-value=6.7e-15  Score=91.25  Aligned_cols=83  Identities=20%  Similarity=0.237  Sum_probs=69.0

Q ss_pred             ceEEecCCCeEEEEEEEee-cCCCeEEEEECCEEeccCCcEEEEecC-----ceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         57 QWIHTAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSS-----EKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      ..+.+..|+++.|.|.+.| .|.|.+.|++++.++.......+....     ..+.|.|..+..+|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            4567889999999999999 888999999999998865443332221     2478999999999999999999999999


Q ss_pred             eEEEEEEEe
Q psy12131        131 SQQFIQLSG  139 (245)
Q Consensus       131 ~~~~~~~~~  139 (245)
                      ....+.|.+
T Consensus        91 ~~~t~~L~V   99 (101)
T cd04975          91 KSLTFELYV   99 (101)
T ss_pred             EEEEEEEEE
Confidence            888887765

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.64  E-value=1e-14  Score=85.91  Aligned_cols=74  Identities=22%  Similarity=0.483  Sum_probs=65.2

Q ss_pred             eEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         66 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        66 ~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      .+.|.|.+.|.|.|.+.|++++..+....++.+......+.|.|.++...|.|.|+|.|.|..|.....+.|.+
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            36899999999999999999999987777777766666789999999999999999999999999888887753

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.64  E-value=5.3e-15  Score=86.28  Aligned_cols=73  Identities=30%  Similarity=0.391  Sum_probs=63.1

Q ss_pred             CCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      |+.+.|.|.+.|.|.|.+.|++++..+....++.+...   ..|.|.++..+|.|.|.|.|.|..|....+..|.+
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDD---GSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCC---CEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            67899999999999999999999988776666666433   37999999999999999999999999888877753

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.63  E-value=1.9e-14  Score=89.35  Aligned_cols=91  Identities=23%  Similarity=0.427  Sum_probs=71.1

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC-----CcEEEEecCceeEEEEccCCCCCCeEEEEE
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ  123 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  123 (245)
                      +|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+...     .++.+......+.|.|.++..+|.|.|.|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            466666665555666899999999999999999999988765432     233333334457899999999999999999


Q ss_pred             EEeCCceeEEEEEEEe
Q psy12131        124 ASNNLGSSQQFIQLSG  139 (245)
Q Consensus       124 ~~n~~g~~~~~~~~~~  139 (245)
                      |.|..|.....+.|.+
T Consensus        82 A~N~~G~~~~~~~l~v   97 (97)
T cd05869          82 ASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EecCCCCeeEEEEEEC
Confidence            9999999888877653

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.63  E-value=1e-14  Score=85.41  Aligned_cols=73  Identities=25%  Similarity=0.486  Sum_probs=60.4

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEecc-CCcEEEEecC-ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      +.|.|.+.|.|.|.+.|++++..+.. ..++.+...+ ...+|.|.++..+|.|.|+|.|.|..|.......|.+
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            47899999999999999999998874 3456554432 3358999999999999999999999999888777653

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.61  E-value=2.2e-14  Score=88.82  Aligned_cols=81  Identities=19%  Similarity=0.390  Sum_probs=67.0

Q ss_pred             eEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC-CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+... .++..  ....+.|.|.++..+|.|.|+|.|.|..|.....+.
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   89 (95)
T cd05730          12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSF--NEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH   89 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEE--eCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence            346789999999999999999999999999887654 33332  223457999999999999999999999999888887


Q ss_pred             EEec
Q psy12131        137 LSGI  140 (245)
Q Consensus       137 ~~~~  140 (245)
                      |.+.
T Consensus        90 L~V~   93 (95)
T cd05730          90 LKVF   93 (95)
T ss_pred             EEEE
Confidence            7653

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.61  E-value=3.2e-14  Score=86.74  Aligned_cols=86  Identities=17%  Similarity=0.247  Sum_probs=69.2

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      |.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.......    .....|.|.++..+|.|.|.|.+.|..|
T Consensus         2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (88)
T cd04968           2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS----MSGAVLKIPNIQFEDEGTYECEAENIKG   77 (88)
T ss_pred             CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE----EeCCEEEECCCCcccCEEEEEEEEECCC
Confidence            444555666778899999999999999999999999877655443322    1345899999999999999999999999


Q ss_pred             eeEEEEEEEe
Q psy12131        130 SSQQFIQLSG  139 (245)
Q Consensus       130 ~~~~~~~~~~  139 (245)
                      .......|.+
T Consensus        78 ~~~~~~~l~V   87 (88)
T cd04968          78 KDTHQGRIYV   87 (88)
T ss_pred             cEEEEEEEEE
Confidence            9888777664

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.61  E-value=1.6e-14  Score=87.28  Aligned_cols=82  Identities=20%  Similarity=0.327  Sum_probs=69.1

Q ss_pred             eecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ  133 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  133 (245)
                      ..|....+..|+.+.|.|.+.|.|.|.+.|++++..+....++...    ...|.|.++..+|.|.|+|.|.|..|....
T Consensus         4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~   79 (85)
T cd05728           4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE----AGDLRITKLSLSDSGMYQCVAENKHGTIYA   79 (85)
T ss_pred             ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe----CCEEEEeeCCHHHCEEEEEEEECCCCeEEE
Confidence            3455677889999999999999999999999999988766555442    347999999999999999999999999888


Q ss_pred             EEEEEe
Q psy12131        134 FIQLSG  139 (245)
Q Consensus       134 ~~~~~~  139 (245)
                      .+.|.+
T Consensus        80 ~~~l~V   85 (85)
T cd05728          80 SAELAV   85 (85)
T ss_pred             EEEEEC
Confidence            877653

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.60  E-value=5.7e-14  Score=86.09  Aligned_cols=84  Identities=20%  Similarity=0.429  Sum_probs=70.4

Q ss_pred             cceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEec-CceeEEEEccCCCCCCeEEEEEEEeCCceeEEE
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF  134 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  134 (245)
                      |..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+... +....|.|.++..+|+|.|.|.+.|..|.....
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   87 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD   87 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence            4567788999999999999999999999999988776665554332 234579999999999999999999999999888


Q ss_pred             EEEEe
Q psy12131        135 IQLSG  139 (245)
Q Consensus       135 ~~~~~  139 (245)
                      +.|.+
T Consensus        88 ~~v~~   92 (92)
T cd05891          88 VTVSV   92 (92)
T ss_pred             EEEEC
Confidence            88763

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.60  E-value=8.1e-14  Score=84.87  Aligned_cols=84  Identities=18%  Similarity=0.394  Sum_probs=69.0

Q ss_pred             eecceEEecCCCeEEEEEEEeecCCCeEEEEE-CCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCcee-
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-  131 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-  131 (245)
                      ..+....+..|+.+.|.|.+.|.|. .+.|++ ++..+....++.+...+....|.|..+..+|.|.|+|.|.|..|.. 
T Consensus         5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   83 (92)
T cd05866           5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ   83 (92)
T ss_pred             EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEE
Confidence            3445667889999999999999987 999998 5677766667777666666799999999999999999999999875 


Q ss_pred             EEEEEEE
Q psy12131        132 QQFIQLS  138 (245)
Q Consensus       132 ~~~~~~~  138 (245)
                      .+++.|.
T Consensus        84 ~~~i~l~   90 (92)
T cd05866          84 EATVVLE   90 (92)
T ss_pred             EEEEEEE
Confidence            5566654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.60  E-value=4.3e-14  Score=82.30  Aligned_cols=71  Identities=25%  Similarity=0.427  Sum_probs=59.9

Q ss_pred             eEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         66 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        66 ~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      ++.|.|.+.|.|.|.+.|++++..+....++.+...+   .+.|.++..+|.|.|.|.|.|..|.....+.|.+
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            3789999999999999999999888766666554433   5788899999999999999999999888887753

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.59  E-value=7.4e-14  Score=85.89  Aligned_cols=85  Identities=20%  Similarity=0.308  Sum_probs=66.9

Q ss_pred             ecceEEecCCCeEEEEEEEeecCC-CeEEEEE-CCEEecc-CCcEEEEe-cCceeEEEEccCCCCCCeEEEEEEEeCC-c
Q psy12131         55 EKQWIHTAPDMRAEIICNVYANPP-AKVEWFR-DGTAITL-GGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNNL-G  129 (245)
Q Consensus        55 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~~w~~-~~~~~~~-~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~-g  129 (245)
                      .|....+..|+.+.|.|.+.|.|. |.+.|++ ++..+.. ..++.+.. .+..+.|.|.++..+|.|.|+|.|.|.. |
T Consensus         6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g   85 (96)
T cd05865           6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEG   85 (96)
T ss_pred             eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCC
Confidence            344556889999999999999985 7999998 7766554 33444432 2335789999999999999999999996 8


Q ss_pred             eeEEEEEEEe
Q psy12131        130 SSQQFIQLSG  139 (245)
Q Consensus       130 ~~~~~~~~~~  139 (245)
                      ....++.|.+
T Consensus        86 ~~~~s~~l~v   95 (96)
T cd05865          86 ESEATVNVKI   95 (96)
T ss_pred             cEEEEEEEEE
Confidence            8888887765

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.59  E-value=4.7e-14  Score=83.81  Aligned_cols=72  Identities=21%  Similarity=0.381  Sum_probs=62.3

Q ss_pred             CCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131         64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI  135 (245)
Q Consensus        64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  135 (245)
                      |+.+.|.|.+.|.|.|.+.|++++..+....++.+...+....|.|.++..+|.|.|.|.+.|..|......
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   72 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIP   72 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecc
Confidence            678999999999999999999998888766666666666667899999999999999999999999766543

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.59  E-value=2.1e-14  Score=81.70  Aligned_cols=65  Identities=25%  Similarity=0.469  Sum_probs=55.0

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      +.|.|.+.|.|.|.+.|++++..+...        ...+.|.|.++..+|.|.|+|.|.|..|....++.+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence            468999999999999999999988632        13458999999999999999999999997777666553

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.59  E-value=7.9e-14  Score=86.69  Aligned_cols=89  Identities=25%  Similarity=0.472  Sum_probs=68.7

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--CEEecc-----CCcEEEEecCceeEEEEccCCCCCCeEEE
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GTAITL-----GGRIDMHVSSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      +|.+.. +....+.+|+.+.|.|.+.|.|.|.+.|++.  +..+..     ..++.+........|.|.++..+|.|.|.
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~   80 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD   80 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence            466544 4467788999999999999999999999984  433321     23444443334568999999999999999


Q ss_pred             EEEEeCCceeEEEEEEE
Q psy12131        122 CQASNNLGSSQQFIQLS  138 (245)
Q Consensus       122 C~~~n~~g~~~~~~~~~  138 (245)
                      |.|.|..|.....+.|.
T Consensus        81 C~A~N~~G~~~~~~~l~   97 (98)
T cd05870          81 CEAASRIGGHQKSMYLD   97 (98)
T ss_pred             EEEeccCCcceeEEEEe
Confidence            99999999888777664

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.59  E-value=4.8e-14  Score=82.63  Aligned_cols=73  Identities=23%  Similarity=0.393  Sum_probs=59.7

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEeccC-CcEEEEecC-ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      +.|.|.+.|.|.|.+.|++++..+... .++.+...+ ....|.|.++..+|.|.|+|.|.|..|....+..|.+
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            478999999999999999999888653 345554332 2347999999999999999999999999888877653

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.58  E-value=7.7e-14  Score=86.63  Aligned_cols=89  Identities=26%  Similarity=0.460  Sum_probs=69.5

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC-----CcEEEEecCceeEEEEccCCCCCCeEEEEE
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ  123 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  123 (245)
                      +|.+.. +....+.+|+.+.|.|.+.|.|.|.+.|++++..+...     .++.+......+.|.|.++..+|.|.|.|.
T Consensus         2 ~P~i~~-~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           2 QPKITY-LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             Ccccee-cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            466643 33566789999999999999999999999988655432     233333334457899999999999999999


Q ss_pred             EEeCCceeEEEEEEE
Q psy12131        124 ASNNLGSSQQFIQLS  138 (245)
Q Consensus       124 ~~n~~g~~~~~~~~~  138 (245)
                      |.|..|.....+.|.
T Consensus        81 a~N~~G~~~~s~~l~   95 (96)
T cd05732          81 ASNRIGGDQQSMYLE   95 (96)
T ss_pred             EEeCCCCcEEEEEEe
Confidence            999999988877665

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.58  E-value=5.2e-14  Score=82.53  Aligned_cols=73  Identities=26%  Similarity=0.371  Sum_probs=62.6

Q ss_pred             CCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      |+.+.|.|.+.|.|.|.+.|++++..+....++.+...   ..|.|.++..+|.|.|.|.+.|..|.....+.|.+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPD---GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCC---CeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            67899999999999999999999998876666655332   36999999999999999999999999888877653

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.57  E-value=1.3e-13  Score=83.72  Aligned_cols=77  Identities=22%  Similarity=0.362  Sum_probs=63.0

Q ss_pred             CCeEEEEEEEeecCCCeEEEEECCEEeccC-CcEEEEe----cCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131         64 DMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHV----SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus        64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      |+.+.|.|.+.|.|++.+.|++++..+... .++.+..    ....+.|.|.++...|.|.|+|.|.|..|.....+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            688999999999999999999999877543 3454432    12236899999999999999999999999988877777


Q ss_pred             ec
Q psy12131        139 GI  140 (245)
Q Consensus       139 ~~  140 (245)
                      +.
T Consensus        81 V~   82 (88)
T cd05735          81 VQ   82 (88)
T ss_pred             Ee
Confidence            64

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.57  E-value=1.4e-13  Score=87.05  Aligned_cols=95  Identities=20%  Similarity=0.437  Sum_probs=70.7

Q ss_pred             ecCCeEEeecce--EEe--cCCCeEEEEEEEeecCCCeEEEEECCEEecc-CCcEEEE--ec--CceeEEEEccCC-CCC
Q psy12131         47 IYPPEVSVEKQW--IHT--APDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMH--VS--SEKHSLLVRHIK-DTD  116 (245)
Q Consensus        47 ~~~p~~~~~~~~--~~~--~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~-~~~~~~~--~~--~~~~~l~i~~~~-~~d  116 (245)
                      ..+|.+...+..  +..  ..|..+.|.|.+.|.|.+.+.|++++..+.. +.++.+.  ..  ...+.|.|.++. .+|
T Consensus         2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D   81 (109)
T cd05773           2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD   81 (109)
T ss_pred             ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence            346666555542  211  3568999999999999999999999988764 3344322  11  124689999987 589


Q ss_pred             CeEEEEEEEeCCceeEEEEEEEecC
Q psy12131        117 FGNYMCQASNNLGSSQQFIQLSGIP  141 (245)
Q Consensus       117 ~g~y~C~~~n~~g~~~~~~~~~~~~  141 (245)
                      .|.|.|.|.|..|.....+.|.+..
T Consensus        82 ~G~Y~C~A~N~~G~~~~~i~L~~~~  106 (109)
T cd05773          82 YALFTCTAHNSLGEDSLDIQLVSTS  106 (109)
T ss_pred             CEEEEEEEEeCCccCcEEEEEEecC
Confidence            9999999999999998888888763

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.57  E-value=7.9e-14  Score=86.60  Aligned_cols=82  Identities=18%  Similarity=0.190  Sum_probs=67.3

Q ss_pred             eEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEec------CceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131         58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS------SEKHSLLVRHIKDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  131 (245)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++.++...........      ...+.|.|..+..+|.|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            55677899999999999999999999999999876543322111      124689999999999999999999999998


Q ss_pred             EEEEEEEe
Q psy12131        132 QQFIQLSG  139 (245)
Q Consensus       132 ~~~~~~~~  139 (245)
                      ..++.|.+
T Consensus        92 ~~t~~l~V   99 (101)
T cd05859          92 SYTFALQI   99 (101)
T ss_pred             EEEEEEEE
Confidence            88877765

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.57  E-value=1.5e-13  Score=83.30  Aligned_cols=82  Identities=23%  Similarity=0.458  Sum_probs=66.0

Q ss_pred             eEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEE-EEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRID-MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+....... .........|.|.++..+|.|.|+|.+.|..|.....+.
T Consensus         3 ~~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   82 (85)
T cd05857           3 LHAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   82 (85)
T ss_pred             cEEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence            3457789999999999999999999999998887554321 111223457899999999999999999999999888887


Q ss_pred             EEe
Q psy12131        137 LSG  139 (245)
Q Consensus       137 ~~~  139 (245)
                      |.+
T Consensus        83 l~v   85 (85)
T cd05857          83 LDV   85 (85)
T ss_pred             EEC
Confidence            753

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.57  E-value=7.7e-14  Score=82.30  Aligned_cols=74  Identities=19%  Similarity=0.428  Sum_probs=59.9

Q ss_pred             CCeEEEEEEEeecCCCeEEEEECCEEeccCCcE-EEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRI-DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      |+.+.|.|.+.|.|.|++.|++++.++...... ....  ....|.|.++...|.|.|.|.|.|..|.....+.+.+
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~--~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKV--DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEe--cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            678999999999999999999999987643221 1111  2247889999999999999999999999988887765

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.56  E-value=1.3e-13  Score=81.08  Aligned_cols=72  Identities=25%  Similarity=0.445  Sum_probs=59.2

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEeccC-CcEEEEec-CceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      +.|.|.+.|.|.|.+.|++++..+... .++.+... .....|.|..+..+|.|.|+|.|.|..|.......|.
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   74 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLD   74 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEe
Confidence            478999999999999999999988743 45554433 2344799999999999999999999999988877664

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.56  E-value=1.2e-13  Score=81.61  Aligned_cols=72  Identities=21%  Similarity=0.382  Sum_probs=60.1

Q ss_pred             CCeEEEEEEEeecCCCeEEEEECCEEeccCC---cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         64 DMRAEIICNVYANPPAKVEWFRDGTAITLGG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      |+.+.|.|.+.|.|.|.+.|++++..+....   ++..    ....|.|.+++.+|.|.|.|.|.|..|.....+.|.+
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV----SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe----eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            6789999999999999999999998876532   2222    2347999999999999999999999999888777765

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.55  E-value=5.6e-14  Score=81.37  Aligned_cols=68  Identities=26%  Similarity=0.569  Sum_probs=58.1

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL  137 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~  137 (245)
                      +.|.|.+.|.|.|.+.|++++..+....++.+..   ...|.|.++..+|.|.|.|.|.|..|.....+.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP---EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECC---CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            4789999999999999999998887666655532   3479999999999999999999999998877665

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.55  E-value=2.9e-13  Score=84.82  Aligned_cols=91  Identities=21%  Similarity=0.346  Sum_probs=65.8

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC----C-cEEEEecCceeEEEEc--cCCCCCCeEEE
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG----G-RIDMHVSSEKHSLLVR--HIKDTDFGNYM  121 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~----~-~~~~~~~~~~~~l~i~--~~~~~d~g~y~  121 (245)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...    . .......+....+.+.  .+..+|.|.|.
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            577777777888999999999999999999999999999887651    1 1122222222222332  23678999999


Q ss_pred             EEEEeCCce-eEEEEEEEe
Q psy12131        122 CQASNNLGS-SQQFIQLSG  139 (245)
Q Consensus       122 C~~~n~~g~-~~~~~~~~~  139 (245)
                      |.+.|..|. ....+.|.+
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            999999998 555555543

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.54  E-value=9.1e-14  Score=80.80  Aligned_cols=69  Identities=23%  Similarity=0.505  Sum_probs=57.3

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      +.|.|.+.|.|.|.+.|++++..+....++..    ....|.|.++..+|+|.|+|.+.|..|.....+.+.+
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~----~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK----SGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc----CCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence            46899999999999999999998876644322    3457999999999999999999999998777666553

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.54  E-value=1.5e-13  Score=81.47  Aligned_cols=75  Identities=17%  Similarity=0.240  Sum_probs=61.2

Q ss_pred             CCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      |+.+.|.|.+.|.|.|.+.|++++..+....... ........|.|.++...|.|.|.|.|.|..|.....+.|.+
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDP-RRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcc-eEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            6789999999999999999999998876543221 11223468999999999999999999999999888877765

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.53  E-value=1.9e-13  Score=81.29  Aligned_cols=70  Identities=23%  Similarity=0.396  Sum_probs=57.4

Q ss_pred             EEEEEeecCCCeEEEEECCEEeccCCcEEEEe-------cCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131         69 IICNVYANPPAKVEWFRDGTAITLGGRIDMHV-------SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus        69 l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      |.|.+.|.|.|.+.|++++..+..........       ....+.|.|.++...|.|.|+|.|.|..|.....+.+.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            68999999999999999999887665432211       12355799999999999999999999999988887764

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.53  E-value=1.4e-13  Score=80.15  Aligned_cols=70  Identities=20%  Similarity=0.390  Sum_probs=57.0

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      +.|.|.+.|.|.|.+.|++++..+..... ..  ......|.|.++..+|.|.|.|.|.|..|.....+.|.+
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~-~~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRT-KK--LNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCce-eE--EcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            46899999999999999999876654322 11  123458999999999999999999999999888887764

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.52  E-value=3.4e-13  Score=77.76  Aligned_cols=68  Identities=22%  Similarity=0.441  Sum_probs=54.9

Q ss_pred             CCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12131         64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL  137 (245)
Q Consensus        64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~  137 (245)
                      |..+.|.|.+.|.|.|.+.|++++..+.....+..    ....|.|.++.  |.|.|+|.|.|..|....+..|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            67899999999999999999999988765443322    23468888874  7899999999999988777655

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.52  E-value=2.4e-13  Score=79.89  Aligned_cols=70  Identities=23%  Similarity=0.382  Sum_probs=56.9

Q ss_pred             EEEEEeecCCCeEEEEECCEEeccCCcEEE--Ee---cCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131         69 IICNVYANPPAKVEWFRDGTAITLGGRIDM--HV---SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus        69 l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~---~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      |.|.+.|.|.|.+.|++++..+........  ..   ....+.|.|..+...|.|.|+|.|.|..|....++.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            679999999999999999999976654321  11   12346899999999999999999999999988877653

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.51  E-value=6.8e-13  Score=79.94  Aligned_cols=77  Identities=19%  Similarity=0.311  Sum_probs=61.2

Q ss_pred             CeEEEEEEEeecCCC--eEEEEECCEEeccC---CcEEE-EecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131         65 MRAEIICNVYANPPA--KVEWFRDGTAITLG---GRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus        65 ~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~---~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      +++.|.|.+.|.|.|  .+.|++++..+...   .++.+ ......+.|.|.+++..|.|.|+|.|.|..|...+.+.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            468999999999987  68999999887543   23322 2222346899999999999999999999999999988887


Q ss_pred             ecC
Q psy12131        139 GIP  141 (245)
Q Consensus       139 ~~~  141 (245)
                      +..
T Consensus        81 V~~   83 (85)
T cd05854          81 VRG   83 (85)
T ss_pred             EEC
Confidence            763

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.51  E-value=2.1e-13  Score=78.61  Aligned_cols=67  Identities=24%  Similarity=0.503  Sum_probs=54.5

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      +.|.|.+.|.|.|.+.|++++.++.....+  .   ....|.|.++..+|.|.|+|.|.|..|......++.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~--~---~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~   67 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF--K---RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQ   67 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEE--c---cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEE
Confidence            368999999999999999999988764332  1   234799999999999999999999999766655443

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.50  E-value=1.2e-12  Score=80.58  Aligned_cols=82  Identities=23%  Similarity=0.401  Sum_probs=59.8

Q ss_pred             CeEEeecceEEec---CCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCC-CCCCeEEEEEEE
Q psy12131         50 PEVSVEKQWIHTA---PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIK-DTDFGNYMCQAS  125 (245)
Q Consensus        50 p~~~~~~~~~~~~---~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~  125 (245)
                      |.+...|..+.+.   .|+.+.|.|.+.|.|.|.+.|++++..+..........  ....|.|.++. ..|.|.|.|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~--~~g~L~i~~~~~~~D~G~Y~C~A~   79 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSL--IDGNLIISNPSEVKDSGRYQCLAT   79 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEe--eCCeEEEccCCccCcCEEEEEEEE
Confidence            4444445444333   47899999999999999999999999886443222221  12368888874 689999999999


Q ss_pred             eCCceeEE
Q psy12131        126 NNLGSSQQ  133 (245)
Q Consensus       126 n~~g~~~~  133 (245)
                      |..|....
T Consensus        80 N~~G~~~S   87 (94)
T cd05848          80 NSIGSILS   87 (94)
T ss_pred             cCCCeEEe
Confidence            99997643

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.50  E-value=1.1e-12  Score=81.52  Aligned_cols=88  Identities=22%  Similarity=0.490  Sum_probs=68.9

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCC-eEEEEECCEEeccC--CcEEEEec----CceeEEEEccCCCCC-CeEE
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLG--GRIDMHVS----SEKHSLLVRHIKDTD-FGNY  120 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~g~y  120 (245)
                      ||.+.. +....+..|+.+.|.|.+.|.|.| .+.|++++..+...  .++.+...    +..+.|.|.++..+| .|.|
T Consensus         2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            566544 445667899999999999999999 69999999877643  35555432    234689999999955 8999


Q ss_pred             EEEEEeCCceeEEEEEE
Q psy12131        121 MCQASNNLGSSQQFIQL  137 (245)
Q Consensus       121 ~C~~~n~~g~~~~~~~~  137 (245)
                      .|.|.|..|.....+.|
T Consensus        81 ~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          81 NCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEcCCCcccEEEEe
Confidence            99999999988877765

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.49  E-value=4.7e-13  Score=79.18  Aligned_cols=74  Identities=22%  Similarity=0.417  Sum_probs=60.0

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      +.|.|.+.|.|.|.+.|++++..+.......+........|.|.++...|.|.|+|.+.|..|.....+.|.+.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            36899999999999999999988765433333233344579999999999999999999999998888887764

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.49  E-value=5.2e-13  Score=79.44  Aligned_cols=77  Identities=17%  Similarity=0.400  Sum_probs=63.2

Q ss_pred             ceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         57 QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      ....+.+|+.+.|.|.+.+. .+.+.|++++.++....++.+.    ...|.|.++..+|.|.|+|.+.|..|.....+.
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~   76 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFS   76 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe----CCEEEECCCChhhCEEEEEEEeCCCCcccEEEE
Confidence            34567899999999999885 5689999999988776665543    237999999999999999999999888777666


Q ss_pred             EE
Q psy12131        137 LS  138 (245)
Q Consensus       137 ~~  138 (245)
                      +.
T Consensus        77 v~   78 (79)
T cd04973          77 VN   78 (79)
T ss_pred             Ee
Confidence            54

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.49  E-value=9.9e-13  Score=77.37  Aligned_cols=73  Identities=25%  Similarity=0.423  Sum_probs=59.1

Q ss_pred             CCeEEEEEEEeecCCCeEEEEE-CCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         64 DMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        64 g~~~~l~C~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+.....   ...|.|..+...|.|.|+|.|.|..|.....+.|.+
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYD---NGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEec---CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            6789999999999999999997 566665544444332   247999999999999999999999999888777653

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.48  E-value=1.1e-12  Score=80.07  Aligned_cols=78  Identities=17%  Similarity=0.393  Sum_probs=62.1

Q ss_pred             ceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE-EE
Q psy12131         57 QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FI  135 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~  135 (245)
                      ....+.+|+.+.|.|.+.|. .|.+.|++++..+... ++.+.  .....|.|.++..+|.|.|.|.|.|..|.... .+
T Consensus        11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~   86 (91)
T cd05740          11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLS--NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPY   86 (91)
T ss_pred             CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEe--CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeE
Confidence            35578899999999999999 9999999999887643 33332  23457999999999999999999999987443 44


Q ss_pred             EEE
Q psy12131        136 QLS  138 (245)
Q Consensus       136 ~~~  138 (245)
                      .|.
T Consensus        87 ~L~   89 (91)
T cd05740          87 ILN   89 (91)
T ss_pred             EEE
Confidence            444

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.48  E-value=4.7e-12  Score=90.21  Aligned_cols=156  Identities=11%  Similarity=0.043  Sum_probs=101.4

Q ss_pred             ceEEecCCCeEEEEEEEeecC-----------CCeEEEEECCEEe--cc-CCc---EEEE-e--cCceeEEEEccCCCCC
Q psy12131         57 QWIHTAPDMRAEIICNVYANP-----------PAKVEWFRDGTAI--TL-GGR---IDMH-V--SSEKHSLLVRHIKDTD  116 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~-----------~~~~~w~~~~~~~--~~-~~~---~~~~-~--~~~~~~l~i~~~~~~d  116 (245)
                      ..+.+.+|+++.|.|.+.+.+           .+++.|++++...  .. +.+   ..+. .  ......|.|.++..+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            346678999999999987643           3589999987542  11 111   0000 0  1123589999999999


Q ss_pred             CeEEEEEEEeCCceeEEEEEEEecCCCCccccCccccCCCeeEEEEEeCCC----CCceEEEEEEEeec--CCCCeEEEe
Q psy12131        117 FGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTY----SGIIQYLLKFRERE--ELTPWRNIV  190 (245)
Q Consensus       117 ~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~  190 (245)
                      .|.|.|.+.|..+.....+.|.+.+.+.    ......+..+.|.|.+.++    .|...+ .||++..  .....  +.
T Consensus       110 sG~Y~C~a~N~~~~~~~~i~L~V~~~~~----~~~~~~G~~v~L~C~~~~~~~~~~p~p~I-~WyKng~~l~~~~r--~~  182 (227)
T PHA02826        110 EGIYICTISSGNICEESTIRLTFDSGTI----NYQFNSGKDSKLHCYGTDGISSTFKDYTL-TWYKNGNIVLYTDR--IQ  182 (227)
T ss_pred             CEEEEEEEEECCcceEEEEEEEEecCCc----cceEecCCCEEEEeeCCCCccccCCCceE-EEEECCEECCCCCC--EE
Confidence            9999999999888877888777754321    1234568899999997432    122233 3555543  11111  11


Q ss_pred             eCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecC
Q psy12131        191 IPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF  227 (245)
Q Consensus       191 ~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~  227 (245)
                      .....        ..+.|.++...+.+.|+|.|....
T Consensus       183 ~~~~~--------~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        183 LRNNN--------STLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             EeCCC--------CEEEECcCCHHhCEEEEEEEEEeE
Confidence            11111        468899999999999999998864

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.47  E-value=3.2e-12  Score=78.32  Aligned_cols=84  Identities=19%  Similarity=0.384  Sum_probs=63.4

Q ss_pred             eecceEEecCCCeEEEEEEEeecCCCeEEEEE-CCEEeccCCcEEEE-ecCceeEEEEccCCCCCCeEEEEEEEeCCc-e
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQASNNLG-S  130 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~-~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g-~  130 (245)
                      ..|....+..|+.+.|.|.+.|.| +.+.|++ ++..+....+..+. .....+.|+|.++..+|.|.|.|.|.|..| .
T Consensus         5 v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~   83 (92)
T cd04977           5 IVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTE   83 (92)
T ss_pred             EecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCc
Confidence            345567788999999999999986 5999997 56655543444333 333457899999999999999999999864 4


Q ss_pred             eEEEEEEE
Q psy12131        131 SQQFIQLS  138 (245)
Q Consensus       131 ~~~~~~~~  138 (245)
                      ...++.|.
T Consensus        84 ~~~sv~l~   91 (92)
T cd04977          84 SEATVNLK   91 (92)
T ss_pred             ceeEEEEE
Confidence            55566554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.47  E-value=1.3e-12  Score=77.27  Aligned_cols=71  Identities=31%  Similarity=0.553  Sum_probs=55.8

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEeccCC-cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeE--EEEEEEe
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAITLGG-RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ--QFIQLSG  139 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~--~~~~~~~  139 (245)
                      ++|.|.+.|.|.|.+.|++++..+.... .+.+..  ....|.|.++..+|.|.|.|.+.|..|...  ..++|.+
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v   74 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSS--KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI   74 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeC--CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence            4789999999999999999999876543 333322  235899999999999999999999999753  3555554

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.46  E-value=7.1e-13  Score=78.16  Aligned_cols=71  Identities=25%  Similarity=0.463  Sum_probs=55.2

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEe-cc--CCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAI-TL--GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~-~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      +.|.|.+.|.|.|.+.|++++... ..  ..++.+..  ....|.|.++..+|.|.|.|.|.|..|.....+.|.+
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMP--EDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEec--CCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            368999999999999999987532 22  22333322  2347999999999999999999999999888777765

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.46  E-value=1.9e-12  Score=78.28  Aligned_cols=77  Identities=17%  Similarity=0.296  Sum_probs=60.1

Q ss_pred             CeEEEEEEEeecCCC--eEEEEECCEEeccCC---cEE-EEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131         65 MRAEIICNVYANPPA--KVEWFRDGTAITLGG---RID-MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus        65 ~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~---~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      +.+.|.|.+.|.|.|  .+.|++++..+....   .+. .......+.|.|.+++..|.|.|+|.|.|..|.......|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            468899999999887  679999998875432   221 22222456899999999999999999999999888888877


Q ss_pred             ecC
Q psy12131        139 GIP  141 (245)
Q Consensus       139 ~~~  141 (245)
                      +..
T Consensus        81 V~~   83 (85)
T cd04970          81 VRG   83 (85)
T ss_pred             EEC
Confidence            763

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.45  E-value=1.7e-12  Score=78.05  Aligned_cols=78  Identities=22%  Similarity=0.439  Sum_probs=62.7

Q ss_pred             EEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131         59 IHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      +....|+.+.|.|.+.|.|.|.+.|++++..+.......  .......|.|.++..+|.|.|.|.+.|..|.....+.|.
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            445679999999999999999999999988765433221  122346899999999999999999999999887777664

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.45  E-value=1.2e-12  Score=76.39  Aligned_cols=70  Identities=23%  Similarity=0.473  Sum_probs=56.6

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      +.|.|.+.|.|.|.+.|++++..+.... ...  ......|.|.++...|.|.|+|.|.|..|.....+.|.+
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADR-TKF--ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCc-eeE--ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            4689999999999999999887665432 211  123458999999999999999999999999888887765

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.45  E-value=6.7e-12  Score=77.24  Aligned_cols=80  Identities=24%  Similarity=0.445  Sum_probs=59.3

Q ss_pred             CeEEeecceEEecC---CCeEEEEEEEeecCCCeEEEEECCEEeccCC--cEEEEecCceeEEEEccCC-CCCCeEEEEE
Q psy12131         50 PEVSVEKQWIHTAP---DMRAEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIK-DTDFGNYMCQ  123 (245)
Q Consensus        50 p~~~~~~~~~~~~~---g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~  123 (245)
                      |.+...|....+.+   |+.+.|.|.+.|.|.|.+.|++++..+....  ++.+.    ...|.|.++. ..|.|.|.|.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~   77 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLV----AGNLVINNPQKARDAGSYQCL   77 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEE----CCeEEEccCCccCcCEEEEEE
Confidence            44555555554444   4689999999999999999999998886432  33332    2368887765 5899999999


Q ss_pred             EEeCCceeEE
Q psy12131        124 ASNNLGSSQQ  133 (245)
Q Consensus       124 ~~n~~g~~~~  133 (245)
                      |.|..|....
T Consensus        78 A~N~~G~~~s   87 (94)
T cd05850          78 AINRCGTVVS   87 (94)
T ss_pred             EEcCcCcEEE
Confidence            9999997654

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.44  E-value=1.1e-12  Score=75.92  Aligned_cols=68  Identities=28%  Similarity=0.569  Sum_probs=55.7

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      +.|.|.+.|.|.|.+.|++++..+.. .++.+.   ....|.|.++..+|.|.|.|.+.|..|.....+.|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   68 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPK-GRAEIL---DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLT   68 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCC-CcEEEe---eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEE
Confidence            47899999999999999998776543 334443   234799999999999999999999999888877765

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.44  E-value=2e-12  Score=79.01  Aligned_cols=76  Identities=25%  Similarity=0.538  Sum_probs=57.3

Q ss_pred             CCeEEEEEEEeecCCCeEEEEEC----CEEeccCCc--EEEEe-------cCceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         64 DMRAEIICNVYANPPAKVEWFRD----GTAITLGGR--IDMHV-------SSEKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        64 g~~~~l~C~~~~~~~~~~~w~~~----~~~~~~~~~--~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      |+.+.|.|.+.|.|.|.+.|+++    +..+.....  ..+..       ....+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            67899999999999999999984    343332221  11111       112368999999999999999999999998


Q ss_pred             eEEEEEEEe
Q psy12131        131 SQQFIQLSG  139 (245)
Q Consensus       131 ~~~~~~~~~  139 (245)
                      ......|.+
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            888777665

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.44  E-value=4.4e-12  Score=77.70  Aligned_cols=80  Identities=23%  Similarity=0.364  Sum_probs=58.6

Q ss_pred             CeEEeecceEEecC---CCeEEEEEEEeecCCCeEEEEECCEEecc-CCcEEEEecCceeEEEEccCC-CCCCeEEEEEE
Q psy12131         50 PEVSVEKQWIHTAP---DMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIK-DTDFGNYMCQA  124 (245)
Q Consensus        50 p~~~~~~~~~~~~~---g~~~~l~C~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~  124 (245)
                      |.+...|....+.+   +..+.|.|.+.|.|.|.+.|++++..+.. ..++.+.    ...|.|.++. ..|.|.|.|.|
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~----~g~L~I~~~~~~~D~G~Y~C~A   77 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMV----GGNLVINNPDKYKDAGRYVCIV   77 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEE----CCEEEECcCCcCCCCEEEEEEE
Confidence            44444444443333   45799999999999999999999988753 3344332    2478998875 58999999999


Q ss_pred             EeCCceeEE
Q psy12131        125 SNNLGSSQQ  133 (245)
Q Consensus       125 ~n~~g~~~~  133 (245)
                      .|..|....
T Consensus        78 ~N~~G~~~s   86 (93)
T cd05849          78 SNIYGKVRS   86 (93)
T ss_pred             EeCcceEEE
Confidence            999987644

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.44  E-value=2.2e-12  Score=75.75  Aligned_cols=69  Identities=28%  Similarity=0.580  Sum_probs=54.0

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEecc--CCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCcee-EEEEEEE
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAITL--GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFIQLS  138 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~~~~~  138 (245)
                      +.|.|.+.|.|.|.+.|++++..+..  ..++...   ....|.|.++..+|.|.|.|.|.|..|.. .....|.
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~---~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~   72 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL---RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLY   72 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc---CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEE
Confidence            46899999999999999999988763  3344332   23469999999999999999999999874 3444444

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.44  E-value=1.5e-12  Score=76.93  Aligned_cols=70  Identities=21%  Similarity=0.471  Sum_probs=56.4

Q ss_pred             EEEEEEEee-cCCCeEEEEECCEEeccCCcEE---EEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         67 AEIICNVYA-NPPAKVEWFRDGTAITLGGRID---MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        67 ~~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      +.|.|.+.| .|.|.+.|++++..+.......   +........|.|..+..+|.|.|+|.|.|..|.....+.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            368999999 8999999999998886544322   333344678999999999999999999999998766653

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.43  E-value=2e-12  Score=79.02  Aligned_cols=74  Identities=22%  Similarity=0.404  Sum_probs=59.1

Q ss_pred             CCeEEEEEEEeecCCCeEEEEECCEEec--------cCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131         64 DMRAEIICNVYANPPAKVEWFRDGTAIT--------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI  135 (245)
Q Consensus        64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  135 (245)
                      |+.+.|.|.+.|.|.|.+.|++++....        ...++.+..   ...|.|.++..+|.|.|.|.+.|..|.....+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   77 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ---TGDLTITNVQRSDVGYYICQTLNVAGSILTKA   77 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECC---CCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence            6789999999999999999999875421        123344322   34799999999999999999999999988877


Q ss_pred             EEEec
Q psy12131        136 QLSGI  140 (245)
Q Consensus       136 ~~~~~  140 (245)
                      .|.+.
T Consensus        78 ~l~V~   82 (90)
T cd05726          78 YLEVT   82 (90)
T ss_pred             EEEEe
Confidence            77764

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.43  E-value=2.5e-12  Score=76.36  Aligned_cols=71  Identities=15%  Similarity=0.384  Sum_probs=56.6

Q ss_pred             ecceEEecCCCeEEEEEEEeecCCC-eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE
Q psy12131         55 EKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ  133 (245)
Q Consensus        55 ~~~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  133 (245)
                      .|..+.+..|+.+.|.|.+.|.|.| .+.|++++.++....      ....+.|.|..+.  |.|.|.|.|.|..|....
T Consensus         4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~------~~~~s~L~i~~~~--d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749           4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPP------APSPSVLNVPGLN--ETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCC------CCCCCEEEEcccc--CCeEEEEEEEeccCcEEe
Confidence            4556788999999999999999999 799999998876411      1133578888764  789999999999996544

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.42  E-value=3.2e-12  Score=76.22  Aligned_cols=76  Identities=17%  Similarity=0.303  Sum_probs=59.6

Q ss_pred             CeEEEEEEEeecC--CCeEEEEECCEEecc---CCcEEEEec-CceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131         65 MRAEIICNVYANP--PAKVEWFRDGTAITL---GGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus        65 ~~~~l~C~~~~~~--~~~~~w~~~~~~~~~---~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      +++.|.|.+.+.+  .+.+.|++++..+..   ..++.+... ...+.|.|.+++..|.|.|+|.|.|..+....+..|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            3688999998744  678999999999863   224433211 2345899999999999999999999999988888877


Q ss_pred             ec
Q psy12131        139 GI  140 (245)
Q Consensus       139 ~~  140 (245)
                      +.
T Consensus        81 V~   82 (85)
T cd05853          81 VR   82 (85)
T ss_pred             Ee
Confidence            76

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.42  E-value=4.7e-12  Score=76.86  Aligned_cols=74  Identities=26%  Similarity=0.479  Sum_probs=60.1

Q ss_pred             cceEEecCCCeEEEEEEE-eecCCCeEEEEECCEEecc-CCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeE
Q psy12131         56 KQWIHTAPDMRAEIICNV-YANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ  132 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~-~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  132 (245)
                      |....+..|+.+.|.|.+ .|.|.|.+.|++++..+.. ..++.+..   ...|.|.++...|.|.|.|.+.|..|...
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   78 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD---DGNLLIAEARKSDEGTYKCVATNMVGERE   78 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc---CCEEEEeECCcccCEEEEEEEEeccCcee
Confidence            345667899999999998 7889999999999988765 33343332   34799999999999999999999988654

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.41  E-value=6.4e-12  Score=77.68  Aligned_cols=81  Identities=30%  Similarity=0.475  Sum_probs=59.9

Q ss_pred             ecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCc--EEEEecCceeEEEEccC-----CCCCCeEEEEEEEeC
Q psy12131         55 EKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGR--IDMHVSSEKHSLLVRHI-----KDTDFGNYMCQASNN  127 (245)
Q Consensus        55 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~-----~~~d~g~y~C~~~n~  127 (245)
                      .|....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....  ..+...   ..+.|..+     ...|.|.|.|.+.|.
T Consensus         5 ~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~---~~l~i~~v~~~~~~~~D~G~Y~C~a~N~   81 (95)
T cd05722           5 EPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPN---GSLLITSVVHSKHNKPDEGFYQCVAQND   81 (95)
T ss_pred             CCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccC---CeEEEeeeeccCCCCCcCEEEEEEEECC
Confidence            44556677899999999999999999999999988765432  222222   24556555     578999999999999


Q ss_pred             -Ccee-EEEEEEE
Q psy12131        128 -LGSS-QQFIQLS  138 (245)
Q Consensus       128 -~g~~-~~~~~~~  138 (245)
                       .|.. ...+.|.
T Consensus        82 ~~G~~~s~~~~l~   94 (95)
T cd05722          82 SLGSIVSRTARLT   94 (95)
T ss_pred             ccCcEEEeeeEEe
Confidence             8875 3455443

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.40  E-value=1.6e-11  Score=75.20  Aligned_cols=88  Identities=25%  Similarity=0.482  Sum_probs=69.4

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCC-eEEEEECCEEeccC--CcEEEEec----CceeEEEEccCCCCC-CeEE
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLG--GRIDMHVS----SEKHSLLVRHIKDTD-FGNY  120 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~~~~~~~--~~~~~~~~----~~~~~l~i~~~~~~d-~g~y  120 (245)
                      ||.+ ..+....+.+|+.+.|.|.+.+.|.| .+.|.+++..+...  .++.+...    +..+.|.|.++...| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            5655 45556778899999999999888887 67888877665443  46666443    467899999998877 6899


Q ss_pred             EEEEEeCCceeEEEEEE
Q psy12131        121 MCQASNNLGSSQQFIQL  137 (245)
Q Consensus       121 ~C~~~n~~g~~~~~~~~  137 (245)
                      .|.|.|..|.....+.|
T Consensus        81 ~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEeCCccceEEEEe
Confidence            99999999998887765

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.40  E-value=4e-12  Score=75.03  Aligned_cols=67  Identities=22%  Similarity=0.490  Sum_probs=48.6

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCC----CCCeEEEEEEEeCCceeEE
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKD----TDFGNYMCQASNNLGSSQQ  133 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~n~~g~~~~  133 (245)
                      +.|.|.+.|.|.|++.|++++..+..............+.|.|..+..    .|.|.|.|.|.|..|....
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            468999999999999999999876433222222222334677777664    3789999999999997554

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.40  E-value=4.4e-12  Score=77.42  Aligned_cols=76  Identities=24%  Similarity=0.491  Sum_probs=56.3

Q ss_pred             CCeEEEEEEEeecCCCeEEEEECC----EEeccCCc--EEEEe-------cCceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         64 DMRAEIICNVYANPPAKVEWFRDG----TAITLGGR--IDMHV-------SSEKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        64 g~~~~l~C~~~~~~~~~~~w~~~~----~~~~~~~~--~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      |+.+.|.|.+.|.|.|.+.|++++    ..+.....  .....       .+....|.|.++..+|.|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            578999999999999999999853    22221111  11111       122347999999999999999999999998


Q ss_pred             eEEEEEEEe
Q psy12131        131 SQQFIQLSG  139 (245)
Q Consensus       131 ~~~~~~~~~  139 (245)
                      ...++.|.+
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            888777765

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.39  E-value=2.5e-12  Score=76.09  Aligned_cols=67  Identities=27%  Similarity=0.540  Sum_probs=49.9

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCC----CCCeEEEEEEEeCCceeEE
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKD----TDFGNYMCQASNNLGSSQQ  133 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~n~~g~~~~  133 (245)
                      +.|.|.+.|.|.|.+.|++++..+.......+........|.|..+..    +|.|.|.|.|.|..|....
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            468999999999999999999887543222222222345788887753    6899999999999986543

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.39  E-value=4.9e-12  Score=73.03  Aligned_cols=65  Identities=20%  Similarity=0.295  Sum_probs=51.0

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEeccC-CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI  135 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  135 (245)
                      +.|.|.+.|.|.|++.|++++.++... ..+..  .  ...|.|.++..+|+|.|+|.+.|.........
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~--~--~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~   66 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV--D--GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNL   66 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEe--C--CCEEEECcCCHHHCEEEEEEEEccccceEeeE
Confidence            368999999999999999999887654 23322  2  24799999999999999999999865444433

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.39  E-value=5e-12  Score=75.83  Aligned_cols=76  Identities=22%  Similarity=0.340  Sum_probs=55.8

Q ss_pred             CCeEEEEEEEeecCCCeEEEEECCE---Ee--ccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131         64 DMRAEIICNVYANPPAKVEWFRDGT---AI--TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus        64 g~~~~l~C~~~~~~~~~~~w~~~~~---~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      |+.+.|.|.+.|.|.|.+.|+++..   ..  ................|.|.++..+|.|.|.|.+.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   80 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS   80 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence            6789999999999999999999632   11  111100000111235799999999999999999999999988888775


Q ss_pred             e
Q psy12131        139 G  139 (245)
Q Consensus       139 ~  139 (245)
                      +
T Consensus        81 v   81 (81)
T cd05765          81 V   81 (81)
T ss_pred             C
Confidence            3

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.37  E-value=4.3e-12  Score=77.79  Aligned_cols=79  Identities=20%  Similarity=0.295  Sum_probs=61.0

Q ss_pred             eEEecCCCeEEEEEEEee-----cCCCeEEEEECCEEeccC--CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         58 WIHTAPDMRAEIICNVYA-----NPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~-----~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      ...+.+|+.+.|.|.+.+     .|.+.+.|++++..+...  ....+..  ....|.|.++..+|.|.|.|.+.|..|.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~--~~~~L~I~~~~~~DsG~Y~C~~~N~~g~   85 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ--QKDLLWFLPAALEDSGLYTCVVRNSTYC   85 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee--cCCeEEEccCCcccCeEEEEEEcCCCcc
Confidence            445668999999999998     688899999988654321  1122222  2357999999999999999999999998


Q ss_pred             eEEEEEEE
Q psy12131        131 SQQFIQLS  138 (245)
Q Consensus       131 ~~~~~~~~  138 (245)
                      ....+.|.
T Consensus        86 ~~~~~~L~   93 (94)
T cd05756          86 MKVSISLT   93 (94)
T ss_pred             EEEEEEEE
Confidence            88877765

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.37  E-value=8.6e-12  Score=73.61  Aligned_cols=65  Identities=28%  Similarity=0.529  Sum_probs=48.6

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEecc--CCcEEEEecCceeEEEEccCCC----CCCeEEEEEEEeCCceeEE
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAITL--GGRIDMHVSSEKHSLLVRHIKD----TDFGNYMCQASNNLGSSQQ  133 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~n~~g~~~~  133 (245)
                      +.|.|.+.|.|.|.+.|++++..+..  ..++.+.  .....|.|..+..    .|.|.|.|.|.|..|....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~--~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMR--RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEe--CCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            46899999999999999999987642  3344332  2345788887642    3689999999999997554

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.33  E-value=1.4e-11  Score=72.62  Aligned_cols=67  Identities=22%  Similarity=0.589  Sum_probs=54.6

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCC-eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      |.+...|....+.+|+.++|.|.+.+.|.+ .+.|++++..+..          ....|.|.++ .+|.|.|.|.+.|.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~----------~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET----------TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec----------cCCeEEEeec-ccCCEEeEEECCCC
Confidence            445566777788899999999999987764 7999999987632          2346889888 99999999999986

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.32  E-value=1e-10  Score=70.74  Aligned_cols=80  Identities=23%  Similarity=0.476  Sum_probs=63.8

Q ss_pred             EEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEE-EecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12131         59 IHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL  137 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~  137 (245)
                      +.+..|..+.|.|.+.+.|.+.+.|++++..+........ ........|.|.++..+|.|.|.|.+.|..|....++.|
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            4566899999999999999999999999887765443332 122334578999999999999999999999988777766


Q ss_pred             E
Q psy12131        138 S  138 (245)
Q Consensus       138 ~  138 (245)
                      .
T Consensus        84 ~   84 (85)
T cd05729          84 D   84 (85)
T ss_pred             e
Confidence            4

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.32  E-value=3.1e-11  Score=71.32  Aligned_cols=70  Identities=21%  Similarity=0.492  Sum_probs=54.3

Q ss_pred             EEEEEEEee-cCCCeEEEEECCEEeccCC----cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         67 AEIICNVYA-NPPAKVEWFRDGTAITLGG----RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        67 ~~l~C~~~~-~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      +.|.|.+.+ .|.+.+.|++++..+....    ++.+......+.|.|.++...|.|.|.|.+.|..|....+++
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            368999875 5778999999998775321    233333345678999999999999999999999998777654

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.30  E-value=7.1e-11  Score=71.00  Aligned_cols=77  Identities=18%  Similarity=0.303  Sum_probs=56.0

Q ss_pred             CCeEEEEEEEeecCCCeEEEEECCEEeccCC----cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc--eeEEEEEE
Q psy12131         64 DMRAEIICNVYANPPAKVEWFRDGTAITLGG----RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG--SSQQFIQL  137 (245)
Q Consensus        64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g--~~~~~~~~  137 (245)
                      |+++.|.|.+.+.|.+.+.|++.+.......    ...+......+.|.|.+++.+|.|.|.|.+.|..+  ...+++.+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            6889999999999999999998665322111    11111122357899999999999999999999775  56666666


Q ss_pred             Eec
Q psy12131        138 SGI  140 (245)
Q Consensus       138 ~~~  140 (245)
                      .+.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            653

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.29  E-value=1.2e-10  Score=71.38  Aligned_cols=80  Identities=23%  Similarity=0.416  Sum_probs=56.9

Q ss_pred             CeEEeecceEEec---CCCeEEEEEEEeecCCCeEEEEECCEEeccC--CcEEEEecCceeEEEEccCC-CCCCeEEEEE
Q psy12131         50 PEVSVEKQWIHTA---PDMRAEIICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIK-DTDFGNYMCQ  123 (245)
Q Consensus        50 p~~~~~~~~~~~~---~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~  123 (245)
                      |.+...+....+.   .+..+.|.|.+.|.|.|.+.|++++..+...  ..+...    ...|.|.++. ..|.|.|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~   77 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLV----GGNLVISNPSKAKDAGRYQCL   77 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEE----CCEEEEecCCccCCCEEEEEE
Confidence            3344444444332   3467999999999999999999999887432  233321    2368888776 4899999999


Q ss_pred             EEeCCceeEE
Q psy12131        124 ASNNLGSSQQ  133 (245)
Q Consensus       124 ~~n~~g~~~~  133 (245)
                      |.|..|....
T Consensus        78 a~N~~G~~~S   87 (91)
T cd04967          78 ASNIVGTVLS   87 (91)
T ss_pred             EEcCCCEEEe
Confidence            9999986543

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.29  E-value=4.1e-11  Score=72.25  Aligned_cols=76  Identities=16%  Similarity=0.227  Sum_probs=56.5

Q ss_pred             CCeEEEEEEEeec--CCCeEEEEECCEEeccCCc-----EEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         64 DMRAEIICNVYAN--PPAKVEWFRDGTAITLGGR-----IDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        64 g~~~~l~C~~~~~--~~~~~~w~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      |+.+.|.|.+.+.  |.+.+.|.+.+..+.....     .........+.|.|.+++.+|.|.|.|.+.|..|....+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            6789999999999  7889999886654322111     11111123568999999999999999999999988777766


Q ss_pred             EEe
Q psy12131        137 LSG  139 (245)
Q Consensus       137 ~~~  139 (245)
                      |.+
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            653

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.28  E-value=5e-11  Score=70.96  Aligned_cols=68  Identities=29%  Similarity=0.639  Sum_probs=50.0

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEe-c-------cCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCcee-EEEEEE
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAI-T-------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFIQL  137 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~-~-------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~~~~  137 (245)
                      +.|.|.+.|.|.|.+.|++++... .       ...++.+.   ....|.|.++..+|.|.|.|.|.|..|.. .+.+.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l   77 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLL---SNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL   77 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEe---cCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence            478999999999999999864321 1       12233332   23579999999999999999999999865 444444

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.26  E-value=7e-11  Score=71.43  Aligned_cols=76  Identities=24%  Similarity=0.443  Sum_probs=60.3

Q ss_pred             cceEEecCCCeEEEEEEEee-cCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEE
Q psy12131         56 KQWIHTAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF  134 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  134 (245)
                      |....+..|+.++|.|.+.+ .|.+.+.|++++..+....   .   .....|.|..+..+|.|.|.|.+.|..|.....
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~---~---~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~   81 (85)
T cd05754           8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA---M---DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEAT   81 (85)
T ss_pred             CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc---c---ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence            44567889999999999975 6778999999886543221   1   123579999999999999999999999988877


Q ss_pred             EEE
Q psy12131        135 IQL  137 (245)
Q Consensus       135 ~~~  137 (245)
                      ..|
T Consensus        82 ~~l   84 (85)
T cd05754          82 ATL   84 (85)
T ss_pred             EEE
Confidence            655

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.22  E-value=2.6e-10  Score=68.34  Aligned_cols=68  Identities=22%  Similarity=0.329  Sum_probs=54.8

Q ss_pred             cceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC-CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      |....+..|+++.|.|.+. .+.+.+.|++++.++... .++.+. .   ..|.|.+++.+|.|.|.|.+.+..
T Consensus         3 P~~~~v~~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~r~~~~-~---~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPK-SNLARVVWKFDGKVLTPESAKYLLY-R---DGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             cceEEEECCCCEEEEEECC-CCCCeEEEEECCEECCCCCceEEEE-C---CcEEEeCCCHHHCEEEEEEEEecc
Confidence            4456788999999999985 467899999999998765 344332 2   359999999999999999999864

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.21  E-value=4.6e-10  Score=69.04  Aligned_cols=72  Identities=19%  Similarity=0.298  Sum_probs=54.7

Q ss_pred             ceEEecCCCeEEEEEEEeecCCCeEEEEECC--------EEeccCCcEEEEe-cCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         57 QWIHTAPDMRAEIICNVYANPPAKVEWFRDG--------TAITLGGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~--------~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      ..+.+.+|+.+.|.|.+.+.|.+.+.|++.+        .......++.+.. ......|.|.+++.+|.|.|.|.+.+.
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~   84 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM   84 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence            4567889999999999999999999998632        1122234554432 234578999999999999999999984


Q ss_pred             C
Q psy12131        128 L  128 (245)
Q Consensus       128 ~  128 (245)
                      .
T Consensus        85 ~   85 (95)
T cd07701          85 P   85 (95)
T ss_pred             c
Confidence            3

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.18  E-value=2.7e-10  Score=69.39  Aligned_cols=74  Identities=18%  Similarity=0.346  Sum_probs=57.6

Q ss_pred             EEecCCCeEEEEEEEeec-----CCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE
Q psy12131         59 IHTAPDMRAEIICNVYAN-----PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ  133 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  133 (245)
                      ..+..|....|.|...+.     |.|.+.|++++.++....... .   ....|.|.++..+|.|.|+|.+.|..+....
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~   80 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-V---KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQY   80 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-e---cCCEEEEeeCChhhCEEEEEEEEecCCCEEE
Confidence            456789999999987532     567999999999887654332 2   3458999999999999999999998876555


Q ss_pred             EEE
Q psy12131        134 FIQ  136 (245)
Q Consensus       134 ~~~  136 (245)
                      .++
T Consensus        81 ~~t   83 (92)
T cd05757          81 NVT   83 (92)
T ss_pred             EEE
Confidence            443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.17  E-value=1.8e-09  Score=66.19  Aligned_cols=69  Identities=16%  Similarity=0.268  Sum_probs=53.7

Q ss_pred             eEEecCCCeEEEEEEEeecCCCeEEEEECCEEe--------ccCCcEEEEec-CceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAI--------TLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~--------~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      ...+..|+.+.|.|.+.+.|.|.+.|++.+..+        ....++.+... .....|.|.++..+|.|.|+|.+..
T Consensus         6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             cEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            456789999999999999999999998866432        12234443222 2357899999999999999999997

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.16  E-value=3.3e-10  Score=69.06  Aligned_cols=80  Identities=19%  Similarity=0.324  Sum_probs=59.3

Q ss_pred             cceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCC----cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC-ce
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG----RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL-GS  130 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~-g~  130 (245)
                      +..+.+..|+.+.|.|.+.+ |.+.+.|++++..+....    ++...    ...|.|.++..+|.|.|.|.+.+.. +.
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   77 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT----EDGLLIRSVSPADAGVYTCQSVEHGFKQ   77 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc----CCCEEEccCCHHHCEEEEEEEecCccce
Confidence            34566788999999999976 778999999987665432    22221    2358999999999999999998754 44


Q ss_pred             eEEEEEEEec
Q psy12131        131 SQQFIQLSGI  140 (245)
Q Consensus       131 ~~~~~~~~~~  140 (245)
                      ...++.|.+.
T Consensus        78 ~~~~~~l~V~   87 (89)
T cd04979          78 TLATYSLNVL   87 (89)
T ss_pred             eEeEEEEEEe
Confidence            5556666553

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>smart00410 IG_like Immunoglobulin like

Probab=99.13  E-value=5.4e-09  Score=62.98  Aligned_cols=82  Identities=24%  Similarity=0.538  Sum_probs=65.3

Q ss_pred             eEEecCCCeEEEEEEEeecCCCeEEEEEC-CEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         58 WIHTAPDMRAEIICNVYANPPAKVEWFRD-GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+.....+..........|.|.++...|.|.|.|.+.+..+.....+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            34567899999999999887889999998 77776555666555544678999999999999999999988776665555


Q ss_pred             EEe
Q psy12131        137 LSG  139 (245)
Q Consensus       137 ~~~  139 (245)
                      +.+
T Consensus        83 l~V   85 (86)
T smart00410       83 LTV   85 (86)
T ss_pred             EEE
Confidence            543

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=99.13  E-value=5.4e-09  Score=62.98  Aligned_cols=82  Identities=24%  Similarity=0.538  Sum_probs=65.3

Q ss_pred             eEEecCCCeEEEEEEEeecCCCeEEEEEC-CEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         58 WIHTAPDMRAEIICNVYANPPAKVEWFRD-GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+.....+..........|.|.++...|.|.|.|.+.+..+.....+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            34567899999999999887889999998 77776555666555544678999999999999999999988776665555


Q ss_pred             EEe
Q psy12131        137 LSG  139 (245)
Q Consensus       137 ~~~  139 (245)
                      +.+
T Consensus        83 l~V   85 (86)
T smart00409       83 LTV   85 (86)
T ss_pred             EEE
Confidence            543

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.09  E-value=1.2e-09  Score=65.49  Aligned_cols=64  Identities=20%  Similarity=0.310  Sum_probs=51.6

Q ss_pred             EEecCCCeEEEEEEEee-cCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         59 IHTAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      ..+.+|+.++|.|.+.. .+.+.+.|++++..+...        .....|.|.++..+|.|.|.|.+.+..+.
T Consensus         9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~--------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~   73 (83)
T cd05753           9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS--------HSNSNLSIPQATLSDSGSYHCSGIIGSYD   73 (83)
T ss_pred             ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc--------CCCceEEECccCHHHCEEEEEEEEeCCce
Confidence            35789999999999853 556789999998765421        13457999999999999999999998864

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.09  E-value=3.8e-10  Score=68.62  Aligned_cols=72  Identities=17%  Similarity=0.310  Sum_probs=54.5

Q ss_pred             eEEecCCCeEEEEEEE-eecCCCeEEEEECCEEe--ccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131         58 WIHTAPDMRAEIICNV-YANPPAKVEWFRDGTAI--TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~-~~~~~~~~~w~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  131 (245)
                      ...+.+|+.+.|.|.. .|.|.+.+.|++++.+.  ..+.+..+.  .....|.+.++..+|.|.|.|.|.|..+..
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~--~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVS--QTNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEe--CCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            4557789999999976 77899999999987653  222222222  234589999999999999999999976443

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.07  E-value=4.6e-10  Score=66.99  Aligned_cols=41  Identities=27%  Similarity=0.410  Sum_probs=37.2

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCC
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   50 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p   50 (245)
                      ..+.|.|.+++..|+|+|+|.|.|..+. .++++.|.|..||
T Consensus        45 ~~~~L~I~nv~~~dsG~YtC~a~n~~~~-~~a~a~L~V~~pP   85 (85)
T cd05853          45 SAGDLMIRSIQLKHAGKYVCMVQTSVDK-LSAAADLIVRGPP   85 (85)
T ss_pred             CCCcEEEecCCHHHCEEEEEEEEcccCc-eEEEEEEEEecCC
Confidence            3456999999999999999999999988 7999999999887

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.06  E-value=4.3e-09  Score=62.77  Aligned_cols=77  Identities=27%  Similarity=0.627  Sum_probs=56.8

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      |.+...+  ..+..|+.+.|.|.+.+.|.+.+.|++++..+.....          .+.+..+..+|.|.|.|.+.+..+
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~~~~   69 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASNGSG   69 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEETTE
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEeCCC
Confidence            5555555  3467899999999999888899999998877663221          266778888999999999999654


Q ss_pred             -eeEEEEEEE
Q psy12131        130 -SSQQFIQLS  138 (245)
Q Consensus       130 -~~~~~~~~~  138 (245)
                       .....+.|.
T Consensus        70 ~~~s~~~~v~   79 (80)
T PF13895_consen   70 SNTSTSVNVT   79 (80)
T ss_dssp             EEEEEEEEEE
T ss_pred             CeEeeeEEee
Confidence             344455443

...

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.06  E-value=1.5e-09  Score=61.41  Aligned_cols=63  Identities=22%  Similarity=0.539  Sum_probs=50.1

Q ss_pred             CCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      +|+.+.|.|.+.+.+.+.+.|++++..+..  ....  ......|.|.++...|.|.|.|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE--SNRL--SASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC--CCEE--ecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            478899999988888899999998887762  1111  12345899999999999999999998754

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.04  E-value=3e-09  Score=64.84  Aligned_cols=73  Identities=16%  Similarity=0.343  Sum_probs=53.5

Q ss_pred             EEecCCCeEEEEEEEeecCCCeEEEEECCEEecc--------------CCcEEEEe---cCceeEEEEccCCCCCCeEEE
Q psy12131         59 IHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL--------------GGRIDMHV---SSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~--------------~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      +.+..|+.++|.|.+.+.+.+.+.|++++.....              ..++....   ......|.|.++..+|.|.|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            3567899999999999888899999976532211              11222222   233567999999999999999


Q ss_pred             EEEEeCCcee
Q psy12131        122 CQASNNLGSS  131 (245)
Q Consensus       122 C~~~n~~g~~  131 (245)
                      |.+.|..+..
T Consensus        82 C~v~~~~~~~   91 (94)
T cd07690          82 CEVEDKKEEV   91 (94)
T ss_pred             EEECCccceE
Confidence            9999976543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.02  E-value=1.1e-09  Score=65.92  Aligned_cols=41  Identities=27%  Similarity=0.361  Sum_probs=37.0

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCC
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   50 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p   50 (245)
                      ..++|.|.+++..|+|.|+|.|.|..|. .++.+.|.|..+|
T Consensus        45 ~~~~L~I~~v~~~D~G~YtC~A~n~~g~-~~~~~~L~V~~~P   85 (85)
T cd05854          45 TIGDLVIVNAQLSHAGTYTCTAQTVVDS-ASASATLVVRGPP   85 (85)
T ss_pred             eEeEEEEccCChhhCeEEEEEEecCCCC-EEEEEEEEEECCC
Confidence            3467999999999999999999999998 7889999998876

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.00  E-value=1.1e-08  Score=63.09  Aligned_cols=80  Identities=18%  Similarity=0.265  Sum_probs=55.7

Q ss_pred             ceEEecCCCeEEEEEEEeecCCCeEEEEECCEE-e-------ccCCcEEEEe-cCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         57 QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTA-I-------TLGGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~-~-------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      ..+.+.+|+.+.|.|.+.+.+.+.+.|++.+.. +       ....++.+.. ......|.|.+++.+|.|.|.|.+.+.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   84 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM   84 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence            345678999999999998888889999852211 1       1123444422 234568999999999999999999976


Q ss_pred             CceeEEEEEE
Q psy12131        128 LGSSQQFIQL  137 (245)
Q Consensus       128 ~g~~~~~~~~  137 (245)
                      .. ......|
T Consensus        85 ~~-~~~~~~~   93 (95)
T cd05717          85 PV-QTAKATV   93 (95)
T ss_pred             CC-ceEEEEE
Confidence            53 2344433

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.97  E-value=3e-09  Score=64.56  Aligned_cols=70  Identities=19%  Similarity=0.334  Sum_probs=55.4

Q ss_pred             ceEEecCCCeEEEEEE-EeecCCCeEEEEECCEE-eccCCcEEEEecCceeEEEEccCCCCCCe-EEEEEEEeCCc
Q psy12131         57 QWIHTAPDMRAEIICN-VYANPPAKVEWFRDGTA-ITLGGRIDMHVSSEKHSLLVRHIKDTDFG-NYMCQASNNLG  129 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~-~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g  129 (245)
                      ..+.+.+|+.+.|.|. ..|.|.|.+.|+.++.. +..+.+..+..   ...|.|.++...|.| .|.|.|.|...
T Consensus        11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~---~GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQ---NGNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECC---CceEEEEEEehhhCCCCeEEEEEcccc
Confidence            5677889999999997 69999999999986543 34444444332   358999999999999 79999999764

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.97  E-value=2.6e-08  Score=60.70  Aligned_cols=83  Identities=17%  Similarity=0.174  Sum_probs=65.2

Q ss_pred             ceEEecCCCeEEEEEEEeecCCCe-EEEEECCEEeccCCcEEEEecC-----ceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         57 QWIHTAPDMRAEIICNVYANPPAK-VEWFRDGTAITLGGRIDMHVSS-----EKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      ..+.+..|+++.|.|.+..+|.|+ +.|.+++..+.......+....     -.+.|.+..+..++.|.|+|.+.|+...
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            456788999999999999999997 9999987755433221111111     2478999999999999999999999998


Q ss_pred             eEEEEEEEe
Q psy12131        131 SQQFIQLSG  139 (245)
Q Consensus       131 ~~~~~~~~~  139 (245)
                      ...++.|.+
T Consensus        91 ~s~tF~l~v   99 (101)
T cd05860          91 ASVTFNVYV   99 (101)
T ss_pred             EEEEEEEEE
Confidence            888887765

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=98.97  E-value=4.5e-09  Score=63.49  Aligned_cols=73  Identities=32%  Similarity=0.543  Sum_probs=59.0

Q ss_pred             cCCCeeEEEEEeC--CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        153 LGPDGYRLVWQVD--TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       153 ~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      ....++.|.|..+  ....+..|.|.|+.......|.........        ..+.+.+|.+++.|.|+|.|.|..|.|
T Consensus        11 ~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~v~a~~~~g~g   82 (85)
T PF00041_consen   11 ISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVTVPGNE--------TSYTITGLQPGTTYEFRVRAVNSDGEG   82 (85)
T ss_dssp             ECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEEEETTS--------SEEEEESCCTTSEEEEEEEEEETTEEE
T ss_pred             CCCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeeeeeeee--------eeeeeccCCCCCEEEEEEEEEeCCcCc
Confidence            4778999999996  467899999999987633336655554443        579999999999999999999999988


Q ss_pred             CCC
Q psy12131        231 RPS  233 (245)
Q Consensus       231 ~~s  233 (245)
                      .+|
T Consensus        83 ~~S   85 (85)
T PF00041_consen   83 PPS   85 (85)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            654

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.95  E-value=1.8e-08  Score=61.40  Aligned_cols=78  Identities=21%  Similarity=0.360  Sum_probs=54.8

Q ss_pred             eEEecCCCeEEEEEEEeecCCCeEEEEECC--EE----eccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEE-eCCce
Q psy12131         58 WIHTAPDMRAEIICNVYANPPAKVEWFRDG--TA----ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS-NNLGS  130 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~--~~----~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~-n~~g~  130 (245)
                      .+.+.+|+.+.|.|.. +.|.|.+.|++..  ..    +....++...    ...|.|.++..+|.|.|.|.+. +..+.
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~----~~~L~I~~~~~~DsG~Y~C~a~~~~~~~   79 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHT----ERGLLLRSLQRSDAGVYTCTAVEHSFSQ   79 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEe----cCeEEEeeCChhHCEEEEEEEEccCCeE
Confidence            3456789999999996 4788899999732  11    1122333322    2459999999999999999998 46665


Q ss_pred             eEEEEEEEec
Q psy12131        131 SQQFIQLSGI  140 (245)
Q Consensus       131 ~~~~~~~~~~  140 (245)
                      ....++|.+.
T Consensus        80 ~~~~~~l~v~   89 (91)
T cd05871          80 TLAKYTLHVI   89 (91)
T ss_pred             EEEEEEEEEe
Confidence            5566666653

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.93  E-value=1.6e-08  Score=60.96  Aligned_cols=76  Identities=14%  Similarity=0.212  Sum_probs=53.8

Q ss_pred             CCeEEEEEEEeecCC--CeEEEEECCEEeccC---C--c-EEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131         64 DMRAEIICNVYANPP--AKVEWFRDGTAITLG---G--R-IDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI  135 (245)
Q Consensus        64 g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~---~--~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  135 (245)
                      |+++.|.|.+.+.+.  ..+.|...+......   .  + .........+.|.|.+++..|.|.|+|.+.|..|......
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            678999999987654  478998766432110   1  0 0011122457899999999999999999999988777766


Q ss_pred             EEEe
Q psy12131        136 QLSG  139 (245)
Q Consensus       136 ~~~~  139 (245)
                      .|.+
T Consensus        81 ~~~V   84 (86)
T cd05862          81 IVIV   84 (86)
T ss_pred             EEEE
Confidence            6655

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.93  E-value=7.6e-09  Score=58.80  Aligned_cols=61  Identities=23%  Similarity=0.549  Sum_probs=44.9

Q ss_pred             CCeEEEEEEE-eecCCCeEEEEECCEEeccCCcEEEEecCce--eEEEEccCCCCCCeEEEEEE
Q psy12131         64 DMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYMCQA  124 (245)
Q Consensus        64 g~~~~l~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~  124 (245)
                      |+.+.|.|.+ .+.+.+.+.|.+++.................  ..|.|.++..+|+|.|.|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            6889999999 6677789999998875544333322222211  13999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.91  E-value=3.3e-09  Score=64.03  Aligned_cols=41  Identities=29%  Similarity=0.379  Sum_probs=36.8

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCC
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   50 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p   50 (245)
                      ..+.|.|.+++..|+|.|+|.|.|..|. .++++.|.|..+|
T Consensus        45 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~pP   85 (85)
T cd04970          45 SNGDLMIRNAQLKHAGKYTCTAQTVVDS-LSASADLIVRGPP   85 (85)
T ss_pred             ccceEEEccCCHHhCeeeEEEEecCCCc-EEEEEEEEEECCC
Confidence            4567999999999999999999999887 7889999998876

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>KOG0196|consensus

Probab=98.90  E-value=6.5e-08  Score=78.46  Aligned_cols=130  Identities=20%  Similarity=0.247  Sum_probs=94.1

Q ss_pred             eeEEEEccCCCCCCeEEEEEEEeCCceeE------EEEEEE--ecCCCCccccCccccCCCeeEEEEEe--CCCCCceEE
Q psy12131        104 KHSLLVRHIKDTDFGNYMCQASNNLGSSQ------QFIQLS--GIPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQY  173 (245)
Q Consensus       104 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~------~~~~~~--~~~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~  173 (245)
                      ...+++.++.++....|...|.|+.....      ..+++.  ...+++...........++++|.|..  ..++.++.|
T Consensus       397 ~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~ildY  476 (996)
T KOG0196|consen  397 ETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILDY  476 (996)
T ss_pred             cceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCcceeE
Confidence            45788999998888888999998753211      122222  22333434444455778899999998  446788999


Q ss_pred             EEEEEeec-CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCCC
Q psy12131        174 LLKFRERE-ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA  243 (245)
Q Consensus       174 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~~  243 (245)
                      .+.|.+.. +...+..+.. .         .+..++.+|.+++.|.|+|+|+...|.|..|....++|.+.
T Consensus       477 Evky~ek~~~e~~~~~~~t-~---------~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~  537 (996)
T KOG0196|consen  477 EVKYYEKDEDERSYSTLKT-K---------TTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS  537 (996)
T ss_pred             EEEEeeccccccceeEEec-c---------cceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence            99888865 2233322222 1         16789999999999999999999999999999999999875

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.89  E-value=9.5e-08  Score=58.27  Aligned_cols=72  Identities=18%  Similarity=0.257  Sum_probs=55.3

Q ss_pred             ceEEecCCCeEEEEEEEeecCCCeEEEEECCEEe--------ccCCcEEEEe-cCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         57 QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAI--------TLGGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~--------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      +.+.+.+|+++.|.|.+.+.....+.|++-+..+        ..+.++.... .+...+|.|.+++.+|.|.|.|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            3467889999999999998777778887644322        2455666554 456678999999999999999999864


Q ss_pred             C
Q psy12131        128 L  128 (245)
Q Consensus       128 ~  128 (245)
                      .
T Consensus        85 p   85 (95)
T cd05881          85 P   85 (95)
T ss_pred             c
Confidence            3

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.88  E-value=7.8e-09  Score=63.03  Aligned_cols=45  Identities=36%  Similarity=0.570  Sum_probs=38.9

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +|+.+..++..|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus        46 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          46 PRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             CCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            456666667789999999999999999999999987778888877

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=98.87  E-value=9.4e-09  Score=60.13  Aligned_cols=44  Identities=27%  Similarity=0.317  Sum_probs=35.3

Q ss_pred             cceEEEeec---ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLYNR---ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +|+++..++   .+|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        29 ~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~a~L~V   75 (75)
T cd05892          29 DRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGV-ATCHARLDV   75 (75)
T ss_pred             CeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCe-EEEEEEEeC
Confidence            466665433   26999999999999999999999998 677777754

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=98.87  E-value=5.9e-09  Score=60.72  Aligned_cols=43  Identities=28%  Similarity=0.444  Sum_probs=35.6

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +|+.+..++ +|.|.+++.+|+|.|+|.|.|..|. ...++.|+|
T Consensus        31 ~r~~~~~~g-~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~~   73 (73)
T cd05852          31 SRISIWDDG-SLEILNITKLDEGSYTCFAENNRGK-ANSTGVLSV   73 (73)
T ss_pred             CCEEEcCCC-EEEECcCChhHCEEEEEEEECCCCc-eeEEEEEEC
Confidence            567776554 5999999999999999999999998 677777654

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.84  E-value=5.4e-08  Score=57.94  Aligned_cols=63  Identities=21%  Similarity=0.333  Sum_probs=52.7

Q ss_pred             eEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      ...+..|.++.|.|...+. ...+.|++++..+..+.++.....+    |.|..++..|+|.|.|.+.
T Consensus         5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEe
Confidence            4567899999999999854 6699999999988776666655544    8899999999999999977

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.84  E-value=2.7e-07  Score=61.25  Aligned_cols=64  Identities=25%  Similarity=0.250  Sum_probs=46.6

Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCccccCc--cccCCCeeEEEEEeCCCCC
Q psy12131        106 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSS--RRLGPDGYRLVWQVDTYSG  169 (245)
Q Consensus       106 ~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~~~--~~~~~~~~~l~~~~~~~~~  169 (245)
                      +|.|.+++..|.|.|.|.+.+..+.....+.|.+...|.......  ....+..+.|.|.+.+..|
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P   67 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYP   67 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCC
Confidence            689999999999999999999888877777777754332222221  1125678999999977544

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.84  E-value=1.6e-08  Score=59.44  Aligned_cols=74  Identities=26%  Similarity=0.488  Sum_probs=50.0

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecC-CCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      +|.+...+.......+. +.|.|.+.+.+ .+.+.|+ .......  ..........+.|.|.++..+|.|.|+|.|.|
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN--SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE--EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee--eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            46666666555444444 99999998877 7799999 1111111  01111222456899999999999999999987

...

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.84  E-value=2.9e-08  Score=60.44  Aligned_cols=71  Identities=11%  Similarity=0.262  Sum_probs=51.8

Q ss_pred             EecCCCeEEEEEEE-e----ecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131         60 HTAPDMRAEIICNV-Y----ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus        60 ~~~~g~~~~l~C~~-~----~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  131 (245)
                      .+..|.+..|.|.- .    ..+.+++.|++++.++........... ....|.|.++..+|+|.|+|.+.+..|..
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~-~~~~L~I~~v~~~D~G~YtC~~~~~~~g~   81 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK-GSTYLHIIDVSLNDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC-CCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence            35678899999973 2    235679999999998775432211111 23479999999999999999999986544

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.82  E-value=1.9e-08  Score=59.14  Aligned_cols=44  Identities=23%  Similarity=0.448  Sum_probs=37.0

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      .|+.+...+..|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        31 ~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~~~l~V   74 (75)
T cd05763          31 RRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGS-ISANATLTV   74 (75)
T ss_pred             cceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCE-EEeeEEEEE
Confidence            35566666678999999999999999999999988 677787776

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.82  E-value=2e-08  Score=61.21  Aligned_cols=45  Identities=16%  Similarity=0.442  Sum_probs=37.0

Q ss_pred             cceEEEeec--ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLYNR--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +|+.+..++  ..|.|.+++.+|+|.|+|.|.|..|....+++.|.+
T Consensus        45 ~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~   91 (92)
T cd05866          45 QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI   91 (92)
T ss_pred             CCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence            467776554  379999999999999999999999986677777765

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=98.78  E-value=2.2e-08  Score=58.65  Aligned_cols=44  Identities=23%  Similarity=0.234  Sum_probs=35.2

Q ss_pred             cceEEEeecc---eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLYNRE---SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      .|+++..++.   .|.|.+++.+|+|.|+|.|.|..|. .+.++.|.|
T Consensus        29 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~a~L~V   75 (75)
T cd05893          29 DRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGI-VSCTARLDV   75 (75)
T ss_pred             CeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCE-EEEEEEEeC
Confidence            4566655432   5999999999999999999999998 577777654

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.77  E-value=3.8e-08  Score=60.57  Aligned_cols=44  Identities=23%  Similarity=0.454  Sum_probs=34.6

Q ss_pred             ceEEEee---cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          3 EIELLYN---RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         3 ~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      |+.+..+   .++|.|.+++.+|+|.|+|.|.|..|....+++.|.|
T Consensus        49 r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          49 RISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI   95 (96)
T ss_pred             eEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence            5555433   2579999999999999999999997443788888876

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=98.75  E-value=1.9e-08  Score=57.25  Aligned_cols=37  Identities=24%  Similarity=0.324  Sum_probs=31.3

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      .++.|.|.++..+|+|.|+|.|.|..|. ..+++.|++
T Consensus        29 ~~~~L~i~~v~~~D~G~YtC~a~N~~g~-~~~~~~~~l   65 (67)
T cd05863          29 SQHSLQIKDVTEASAGTYTLVLWNSAAG-LEKRISLEL   65 (67)
T ss_pred             CcCEEEECCCCHHHCEEEEEEEEECCcc-EEEEEEEEE
Confidence            4567999999999999999999999987 566666655

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.74  E-value=2e-07  Score=55.79  Aligned_cols=63  Identities=19%  Similarity=0.379  Sum_probs=44.5

Q ss_pred             EEEEEEEee-cCCCeEEEEECCEEeccCCcEE-EEecC----ceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         67 AEIICNVYA-NPPAKVEWFRDGTAITLGGRID-MHVSS----EKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        67 ~~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~-~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      +.|.|.+.| .|.+.+.|++++..+....... ....+    ..+.|.+......+.+.|+|.+.|...
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l   70 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL   70 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence            689999987 5888999999998875432111 11122    134677777777788899999999753

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PHA03376 BARF1; Provisional

Probab=98.74  E-value=7.3e-07  Score=59.93  Aligned_cols=83  Identities=20%  Similarity=0.258  Sum_probs=53.1

Q ss_pred             ceEEE--eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCe
Q psy12131          3 EIELL--YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAK   80 (245)
Q Consensus         3 ~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~   80 (245)
                      |.++.  .++.+|.|.+++.+|.|.|+|.+...... ..+.-.|.+..|-.............-...++.|...|.|.|.
T Consensus        77 rtD~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~~-~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~  155 (221)
T PHA03376         77 FFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPH  155 (221)
T ss_pred             EEEEEecCCeEEEEEEeeeecCCceEEEEEEcCCCc-eeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCch
Confidence            44552  24556999999999999999999975433 2333334443333222222111122255678899988899999


Q ss_pred             EEEEEC
Q psy12131         81 VEWFRD   86 (245)
Q Consensus        81 ~~w~~~   86 (245)
                      +.|..+
T Consensus       156 ~~Wle~  161 (221)
T PHA03376        156 VQWLMP  161 (221)
T ss_pred             heeccc
Confidence            999864

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.73  E-value=1.7e-07  Score=57.38  Aligned_cols=79  Identities=16%  Similarity=0.236  Sum_probs=55.3

Q ss_pred             eEEecCCCeEEEEEEEee-----------cCCCeEEEEECCEEeccCCc-----EEEEecCceeEEEEccCCCCCCeEEE
Q psy12131         58 WIHTAPDMRAEIICNVYA-----------NPPAKVEWFRDGTAITLGGR-----IDMHVSSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~-----------~~~~~~~w~~~~~~~~~~~~-----~~~~~~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      ...+.+|+.+.|.|....           .....+.|++++........     .++..  ....|.|.++..+|.|.|.
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~--~~~~Lwf~Pa~~eDSG~Y~   86 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSK--EEDSIWFRPAELQDSGLYT   86 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEE--eCCEEEEEeCChhhCeEEE
Confidence            456789999999999621           12347999998644333221     12221  2347999999999999999


Q ss_pred             EEEEeCCceeEEEEEEE
Q psy12131        122 CQASNNLGSSQQFIQLS  138 (245)
Q Consensus       122 C~~~n~~g~~~~~~~~~  138 (245)
                      |++.|........+.|.
T Consensus        87 C~~rN~t~C~~~~i~l~  103 (104)
T cd05896          87 CVLRNSTYCMKVSMSLT  103 (104)
T ss_pred             EEECCCCcceEEEEEEE
Confidence            99999887766666654

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.73  E-value=3.9e-08  Score=58.40  Aligned_cols=44  Identities=36%  Similarity=0.575  Sum_probs=35.4

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +|+.+..+ .+|.|.+++.+|+|.|+|.|.|..|...+..+.|+|
T Consensus        36 ~r~~~~~~-~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734          36 GRIQLLSN-GSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CCEEEecC-CeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            35555443 569999999999999999999999986677777764

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.73  E-value=1.6e-07  Score=59.51  Aligned_cols=74  Identities=18%  Similarity=0.261  Sum_probs=55.0

Q ss_pred             ecceEEecCCCeEEEEEEEeecCCCeEEEEECCE---Ee-----------ccCCcEEEEec--CceeEEEEccCCCCCCe
Q psy12131         55 EKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGT---AI-----------TLGGRIDMHVS--SEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        55 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~---~~-----------~~~~~~~~~~~--~~~~~l~i~~~~~~d~g  118 (245)
                      .+..+.+.+|+++.|.|.+.+.+.+.+.|++...   +.           ....++.+...  .....|.|.+++.+|.|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG   83 (109)
T cd04983           4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA   83 (109)
T ss_pred             cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence            4556778999999999999877778999997321   10           12234544332  35678999999999999


Q ss_pred             EEEEEEEeCC
Q psy12131        119 NYMCQASNNL  128 (245)
Q Consensus       119 ~y~C~~~n~~  128 (245)
                      .|.|.+.+..
T Consensus        84 ~Y~C~~~~~~   93 (109)
T cd04983          84 VYFCALSESG   93 (109)
T ss_pred             EEEEEEecCC
Confidence            9999998754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.72  E-value=5e-08  Score=59.52  Aligned_cols=45  Identities=18%  Similarity=0.214  Sum_probs=37.3

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecC
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP   49 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~   49 (245)
                      |+.+..+ ..|.|.+++.+|+|.|+|.|.|..|. ....+.|.|...
T Consensus        40 r~~v~~~-~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~   84 (90)
T cd05726          40 RFSVSQT-GDLTITNVQRSDVGYYICQTLNVAGS-ILTKAYLEVTDV   84 (90)
T ss_pred             eEEECCC-CeEEEeeCChhhCEEEEEEEEcCCCc-eEEEEEEEEeec
Confidence            4555443 46999999999999999999999998 688888988753

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=98.71  E-value=7.6e-08  Score=56.45  Aligned_cols=44  Identities=27%  Similarity=0.283  Sum_probs=34.4

Q ss_pred             cceEEEeec---ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLYNR---ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      .|+.+...+   .+|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        29 ~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v   75 (75)
T cd05744          29 DRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGV-VSCNARLDV   75 (75)
T ss_pred             CcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCc-EEEEEEEeC
Confidence            355554332   26999999999999999999999998 677776654

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.70  E-value=6.4e-08  Score=55.84  Aligned_cols=42  Identities=31%  Similarity=0.478  Sum_probs=34.0

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ++.+. ....|.|.+++.+|+|.|+|.|.|..|. ....+.|.|
T Consensus        28 ~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   69 (69)
T cd05725          28 RAEIL-DDKSLKIRNVTAGDEGSYTCEAENMVGK-IEASASLTV   69 (69)
T ss_pred             cEEEe-eCCEEEECcCChhHCEEEEEEEEcCCCc-EEEEEEEEC
Confidence            45555 3456999999999999999999999988 677776654

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.70  E-value=6.7e-08  Score=56.06  Aligned_cols=40  Identities=35%  Similarity=0.523  Sum_probs=34.2

Q ss_pred             EEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          6 LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         6 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ......+|.|.+++.+|+|.|+|.|.|..|. .+.++.|.|
T Consensus        31 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   70 (71)
T cd05876          31 KLNNNKTLQLDNVLESDDGEYVCTAENSEGS-ARHHYTVTV   70 (71)
T ss_pred             EEcCCCEEEEcccCHHhCEEEEEEEEcCCCe-EEEEEEEEE
Confidence            3445667999999999999999999999998 677887776

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.70  E-value=1.7e-07  Score=55.03  Aligned_cols=63  Identities=19%  Similarity=0.278  Sum_probs=47.1

Q ss_pred             EEEEEEEe-ecCCCeEEEEECCEEeccCCcEEEEecC----ceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131         67 AEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSS----EKHSLLVRHIKDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus        67 ~~l~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  131 (245)
                      +.|.|... +.|.+.+.|++++.++..... . ...+    ..+.|.+.....+|.+.|.|.|.|..+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-~-~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVIS-Q-QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcc-c-ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            67999985 578889999999998865321 1 0111    23578888888889999999999987643

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.70  E-value=7.6e-08  Score=59.40  Aligned_cols=46  Identities=20%  Similarity=0.278  Sum_probs=38.6

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   48 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~   48 (245)
                      .++.+..+++.|.|.+++.+|+|.|+|.|.|..|. ....+.|.|..
T Consensus        49 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~~   94 (95)
T cd05730          49 EKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGE-QEAEIHLKVFA   94 (95)
T ss_pred             CEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCe-EEEEEEEEEEe
Confidence            35555666678999999999999999999999998 68888888753

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.70  E-value=5.6e-08  Score=60.32  Aligned_cols=44  Identities=30%  Similarity=0.503  Sum_probs=35.3

Q ss_pred             cceEEEe--ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +|+++..  +...|.|.+++.+|+|.|+|.|.|..|. ..+++.|.|
T Consensus        53 ~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~~   98 (98)
T cd05870          53 GRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGG-HQKSMYLDI   98 (98)
T ss_pred             ceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCc-ceeEEEEeC
Confidence            4666653  2357999999999999999999999997 577777754

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.70  E-value=4.8e-08  Score=57.20  Aligned_cols=44  Identities=25%  Similarity=0.376  Sum_probs=35.7

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      .|+....+ ..|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus        30 ~~~~~~~~-g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738          30 GRIKQLRS-GALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CCEEEcCC-cEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            35555443 459999999999999999999999986677777776

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=98.70  E-value=3.2e-07  Score=56.77  Aligned_cols=85  Identities=12%  Similarity=0.009  Sum_probs=61.4

Q ss_pred             cccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCC
Q psy12131        151 RRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG  228 (245)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G  228 (245)
                      .+..|+.+.|.|...+.+++.  ..|+++..  .......+.....        ...+.|.++...+.+.|.|.|.|.+|
T Consensus        11 ~v~~G~~v~l~C~~~G~p~p~--v~W~kdg~~l~~~~~~~~~~~~~--------~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762          11 KVRAGESVELFCKVTGTQPIT--CTWMKFRKQIQEGEGIKIENTEN--------SSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             EEECCCEEEEEEEEcccCCCc--eEEEECCEEecCCCcEEEEecCC--------eeEEEECCCChhhCEEEEEEEEcCCC
Confidence            357799999999998765543  22455443  1121122221111        26789999999999999999999999


Q ss_pred             CCCCCcceEEecCCCCC
Q psy12131        229 WSRPSKAYVFATEGAET  245 (245)
Q Consensus       229 ~~~~s~~~~~~t~~~~~  245 (245)
                      ....+..+.|...|.||
T Consensus        81 ~~~~~~~l~V~~~P~pP   97 (98)
T cd05762          81 SRQAQVNLTVVDKPDPP   97 (98)
T ss_pred             ceeEEEEEEEecCCCCC
Confidence            99999999999998876

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.68  E-value=4.5e-08  Score=57.16  Aligned_cols=43  Identities=28%  Similarity=0.373  Sum_probs=34.6

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      .|+.+..+ .+|.|.+++.+|+|.|+|.|.|..|. ...++.|.|
T Consensus        31 ~~~~~~~~-~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   73 (73)
T cd04969          31 SRICIWPD-GSLEILNVTKSDEGKYTCFAENFFGK-ANSTGSLSV   73 (73)
T ss_pred             CCEEECCC-CeEEEccCChhHCEEEEEEEECCCCc-eEEEEEEEC
Confidence            35555544 45999999999999999999999988 677777654

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.68  E-value=5.4e-08  Score=56.52  Aligned_cols=42  Identities=29%  Similarity=0.481  Sum_probs=34.9

Q ss_pred             eEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         4 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ......+..|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        29 ~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   70 (71)
T cd05731          29 TKFENFNKTLKIDNVSEEDDGEYRCTASNSLGS-ARHTISVTV   70 (71)
T ss_pred             eeEecCCCEEEECCCCHHHCEEEEEEEEeCCce-EEEEEEEEE
Confidence            344445567999999999999999999999987 677777776

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.68  E-value=9.6e-08  Score=55.40  Aligned_cols=43  Identities=21%  Similarity=0.426  Sum_probs=34.4

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +++.+..++ .|.|.+++.+|+|.|+|.|.|..|. ..+++.|.|
T Consensus        29 ~~~~~~~~~-~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L~V   71 (71)
T cd05723          29 DYFKIVKEH-NLQVLGLVKSDEGFYQCIAENDVGN-VQASAQLII   71 (71)
T ss_pred             CCEEEEecC-CEEEEcCCcccCEEEEEEEEcCCCE-EEEEEEEEC
Confidence            345555544 4999999999999999999999998 677777654

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.68  E-value=9.4e-08  Score=56.40  Aligned_cols=45  Identities=29%  Similarity=0.504  Sum_probs=35.3

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEe
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVI   47 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~   47 (245)
                      ++.+..+...|.|.+++.+|+|.|+|.|.|..|.. .++.+.|.|.
T Consensus        30 ~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760          30 NYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             cEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            44555556689999999999999999999999873 3456767664

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.68  E-value=8.9e-08  Score=58.60  Aligned_cols=36  Identities=19%  Similarity=0.533  Sum_probs=30.7

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ++|.|.+++.+|+|.|+|.|.|..|....+++.|.|
T Consensus        57 ~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~~   92 (92)
T cd04977          57 STLTIYNANIEDAGIYKCVATDAKGTESEATVNLKI   92 (92)
T ss_pred             EEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEEC
Confidence            479999999999999999999987665677777754

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=98.67  E-value=1e-07  Score=57.47  Aligned_cols=44  Identities=18%  Similarity=0.335  Sum_probs=35.7

Q ss_pred             cceEEEe--ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +|+.+..  +.+.|.|.+++.+|+|.|+|.|.|..|. .++++.|.|
T Consensus        41 ~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~-~~~~~~l~V   86 (86)
T cd05894          41 GRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGE-DHASLFVKV   86 (86)
T ss_pred             CeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCc-EEEEEEEEC
Confidence            3565554  3467999999999999999999999998 677777764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.67  E-value=5.6e-07  Score=54.52  Aligned_cols=85  Identities=11%  Similarity=-0.096  Sum_probs=56.6

Q ss_pred             CCeeEEEEEeCCCCCceEEEEEEEeec--CC-CCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        155 PDGYRLVWQVDTYSGIIQYLLKFRERE--EL-TPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      |+.+.|.|.+.+.+++ .+ .|+++..  .. .....+.....    .......+.|.++...+.+.|.|.|.|.+|...
T Consensus         1 g~~~~l~C~~~g~p~~-~i-~W~k~~~~i~~~~~r~~~~~~~~----~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~   74 (88)
T cd05735           1 GQKKEMSCTAHGEKPI-IV-RWEKEDRIINPEMSRYLVSTKEV----GDEVISTLQILPTVREDSGFFSCHAINSYGEDR   74 (88)
T ss_pred             CCeEEEEEEEECCCCC-EE-EEeeCCEECCCCCCcEEEEEecC----CCcEEEEEEECCCCcccCEEEEEEEEcCCCcce
Confidence            4678999999776544 22 2344332  11 11111111111    112236789999999999999999999999999


Q ss_pred             CCcceEEecCCCCC
Q psy12131        232 PSKAYVFATEGAET  245 (245)
Q Consensus       232 ~s~~~~~~t~~~~~  245 (245)
                      .+..+.+...|.||
T Consensus        75 ~~~~L~V~~~P~~P   88 (88)
T cd05735          75 GIIQLTVQEPPDPP   88 (88)
T ss_pred             EEEEEEEeCCCCCC
Confidence            99999999988876

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.66  E-value=1.8e-07  Score=57.16  Aligned_cols=74  Identities=14%  Similarity=0.256  Sum_probs=54.1

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      +|.+...+. ..+..|++++|.|... .+...+.|++++.......   .........|.|.++..+|.|.|+|.+.+.
T Consensus         2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~---~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK---PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc---cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            355555554 3578999999999875 5667899999887533211   112234567999999999999999999885

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.66  E-value=1.4e-07  Score=55.55  Aligned_cols=44  Identities=27%  Similarity=0.408  Sum_probs=37.6

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      ++.+..++..|.|.+++.+|+|.|+|.+.|..|. ...++.|.|.
T Consensus        31 ~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~   74 (76)
T cd05736          31 QLTLIANGSELHISNVRYEDTGAYTCIAKNEAGV-DEDISSLFVE   74 (76)
T ss_pred             cEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCC-cceEEEEEEE
Confidence            4556666678999999999999999999999998 6788888875

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.66  E-value=6.5e-08  Score=56.66  Aligned_cols=42  Identities=29%  Similarity=0.410  Sum_probs=33.4

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ++.+.. ..+|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        33 ~~~~~~-~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L~V   74 (74)
T cd05745          33 RHLVLS-SGTLRISRVALHDQGQYECQAVNIVGS-QRTVAQLTV   74 (74)
T ss_pred             CeEEcc-CCeEEEeeCCHHhCEEEEEEEEeCCCc-eeEEEEEeC
Confidence            333433 446999999999999999999999998 677777754

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.65  E-value=8.1e-08  Score=56.27  Aligned_cols=43  Identities=23%  Similarity=0.276  Sum_probs=34.5

Q ss_pred             ceEEEe--ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          3 EIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         3 ~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ++.+..  ..+.|.|.+++.+|+|.|+|.|.|..|. .+.++.|.|
T Consensus        30 ~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   74 (74)
T cd05748          30 RVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGE-KSATINVKV   74 (74)
T ss_pred             eEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCcc-EEEEEEEEC
Confidence            444433  3567999999999999999999999998 677777764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.61  E-value=7.6e-07  Score=56.24  Aligned_cols=77  Identities=12%  Similarity=0.254  Sum_probs=53.5

Q ss_pred             CCCeEEEEEEEeecC------------CCeEEEEEC--CE---Ee-----------ccCCcEEEEe---cCceeEEEEcc
Q psy12131         63 PDMRAEIICNVYANP------------PAKVEWFRD--GT---AI-----------TLGGRIDMHV---SSEKHSLLVRH  111 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~------------~~~~~w~~~--~~---~~-----------~~~~~~~~~~---~~~~~~l~i~~  111 (245)
                      .|++++|.|......            .+.+.|++-  +.   .+           ....++.+..   ......|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            378999999987432            358999973  21   01           0112343332   33567999999


Q ss_pred             CCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131        112 IKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus       112 ~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      ++.+|.|.|.|.+.++.......+.|.+
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v  108 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQV  108 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEE
Confidence            9999999999999988777766666654

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.61  E-value=1.2e-06  Score=54.61  Aligned_cols=76  Identities=21%  Similarity=0.392  Sum_probs=50.0

Q ss_pred             CCeEEEEEEEeecCC---CeEEEEECC--EEe---------c------cCCcEEEEe---cCceeEEEEccCCCCCCeEE
Q psy12131         64 DMRAEIICNVYANPP---AKVEWFRDG--TAI---------T------LGGRIDMHV---SSEKHSLLVRHIKDTDFGNY  120 (245)
Q Consensus        64 g~~~~l~C~~~~~~~---~~~~w~~~~--~~~---------~------~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y  120 (245)
                      |+++.|.|...+...   ..+.|++..  ..+         .      ...++.+..   .....+|.|.+++.+|.|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            678899998863322   367787743  111         0      001222211   12356899999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEe
Q psy12131        121 MCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus       121 ~C~~~n~~g~~~~~~~~~~  139 (245)
                      .|.+.+..+.....+.|.+
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999988777777777765

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.60  E-value=5.4e-07  Score=57.19  Aligned_cols=74  Identities=14%  Similarity=0.307  Sum_probs=52.9

Q ss_pred             eecceEEecCCCeEEEEEEEeecCCCeEEEEECCE--Eec----------------cCCcEEEEec-CceeEEEEccCCC
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGT--AIT----------------LGGRIDMHVS-SEKHSLLVRHIKD  114 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~--~~~----------------~~~~~~~~~~-~~~~~l~i~~~~~  114 (245)
                      ..|..+.+.+|++++|.|...+ +.+.+.|++...  ...                ...++..... .....|.|.+++.
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~   81 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP   81 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence            3455678899999999999987 667899998321  100                0123433322 2457899999999


Q ss_pred             CCCeEEEEEEEeCC
Q psy12131        115 TDFGNYMCQASNNL  128 (245)
Q Consensus       115 ~d~g~y~C~~~n~~  128 (245)
                      +|.|.|.|.+.+..
T Consensus        82 ~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          82 EDSAVYLCASSLGG   95 (110)
T ss_pred             hhCEEEEEEeeCCC
Confidence            99999999998753

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.59  E-value=1.6e-06  Score=54.60  Aligned_cols=78  Identities=18%  Similarity=0.436  Sum_probs=53.9

Q ss_pred             CCCeEEEEEEEeecC------CCeEEEEECC-----E-Eec--cCCcE--------EEE---ecCceeEEEEccCCCCCC
Q psy12131         63 PDMRAEIICNVYANP------PAKVEWFRDG-----T-AIT--LGGRI--------DMH---VSSEKHSLLVRHIKDTDF  117 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~------~~~~~w~~~~-----~-~~~--~~~~~--------~~~---~~~~~~~l~i~~~~~~d~  117 (245)
                      .|++++|.|.....+      .+.+.|++..     . .+.  .+...        ++.   .......|+|.+++.+|.
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            488999999987653      4589999852     1 110  11111        111   123467999999999999


Q ss_pred             eEEEEEEEeCCceeEEEEEEEec
Q psy12131        118 GNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus       118 g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      |.|.|.+.+..+.....+.|.+.
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEE
Confidence            99999999987777777777653

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.58  E-value=2.2e-07  Score=57.56  Aligned_cols=35  Identities=40%  Similarity=0.614  Sum_probs=31.1

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +.|.|.+++.+|+|.|+|.|.|..|. .++.+.|.|
T Consensus        63 ~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~v   97 (97)
T cd05869          63 SSLTLKYIQYTDAGEYLCTASNTIGQ-DSQSMYLEV   97 (97)
T ss_pred             EEEEEecCccCcCEEEEEEEecCCCC-eeEEEEEEC
Confidence            56999999999999999999999998 677777764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=98.58  E-value=2.3e-07  Score=56.27  Aligned_cols=39  Identities=23%  Similarity=0.283  Sum_probs=33.3

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      ..+..|.|.+++.+|+|.|+|.|.|..|. ....+.|.|+
T Consensus        50 ~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~V~   88 (88)
T cd05851          50 MSGAVLKIFNIQPEDEGTYECEAENIKGK-DKHQARVYVQ   88 (88)
T ss_pred             cCCCEEEECcCChhhCEEEEEEEEcCCCc-eEEEEEEEEC
Confidence            34567999999999999999999999998 6777777763

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.57  E-value=1.4e-07  Score=54.43  Aligned_cols=40  Identities=25%  Similarity=0.457  Sum_probs=32.0

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV   44 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l   44 (245)
                      ++.+.. .+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|
T Consensus        29 ~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~L   68 (69)
T cd05746          29 KFHISP-EGYLAIRDVGVADQGRYECVARNTIGY-ASVSMVL   68 (69)
T ss_pred             CEEECC-CCEEEECcCChhhCEEEEEEEECCCCc-EEEEEEe
Confidence            444443 456999999999999999999999988 5666655

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=98.57  E-value=2.9e-07  Score=57.15  Aligned_cols=37  Identities=32%  Similarity=0.315  Sum_probs=33.1

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      .+.|.|.++..+|+|.|+|.|.|..|. .+.++.|.|.
T Consensus        64 ~~~L~i~~v~~~D~G~Ytc~A~N~~G~-~~~t~~L~V~  100 (101)
T cd04975          64 VSELKLVRLKESEAGTYTFLASNSDAS-KSLTFELYVN  100 (101)
T ss_pred             EEEEEEeecCHhhCeeEEEEEECCCcc-EEEEEEEEEE
Confidence            467999999999999999999999998 7888888775

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.56  E-value=1.8e-07  Score=57.82  Aligned_cols=45  Identities=20%  Similarity=0.397  Sum_probs=38.8

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +|+++..++.+|+|.+++.+|+|.|.|.+....+....+.+.|.|
T Consensus        52 ~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          52 ERVNFSQNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI   96 (97)
T ss_pred             eeEEecCCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence            477887777889999999999999999999887776677888876

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.55  E-value=6.5e-07  Score=56.32  Aligned_cols=70  Identities=17%  Similarity=0.346  Sum_probs=50.5

Q ss_pred             EecCCCeEEEEEEEeec-CCCeEEEEECCE-----Ee------------ccCCcEEEEecC--ceeEEEEccCCCCCCeE
Q psy12131         60 HTAPDMRAEIICNVYAN-PPAKVEWFRDGT-----AI------------TLGGRIDMHVSS--EKHSLLVRHIKDTDFGN  119 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~-~~~~~~w~~~~~-----~~------------~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~  119 (245)
                      .+.+|+.+.|.|...+. +...+.|++...     .+            ....++.+....  ....|+|.+++.+|.|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            46789999999999876 567899998322     11            011233333322  46789999999999999


Q ss_pred             EEEEEEeCCc
Q psy12131        120 YMCQASNNLG  129 (245)
Q Consensus       120 y~C~~~n~~g  129 (245)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999998764

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.54  E-value=9.8e-07  Score=55.59  Aligned_cols=75  Identities=16%  Similarity=0.324  Sum_probs=52.5

Q ss_pred             EeecceEEecCCCeEEEEEEEeecC-CCeEEEEECC--E---Eec---------cCCcEEEEecCceeEEEEccCCCCCC
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDG--T---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDF  117 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~w~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~  117 (245)
                      ...|....+.+|+++.|.|.+.+.. ...+.|++..  .   .+.         ...++..........|.|.+++.+|.
T Consensus         4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds   83 (106)
T cd04980           4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA   83 (106)
T ss_pred             EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence            3445567789999999999987655 5679999732  1   111         01234443334456899999999999


Q ss_pred             eEEEEEEEeC
Q psy12131        118 GNYMCQASNN  127 (245)
Q Consensus       118 g~y~C~~~n~  127 (245)
                      |.|.|.+.+.
T Consensus        84 g~Y~Ca~~~~   93 (106)
T cd04980          84 AVYYCQQYGT   93 (106)
T ss_pred             EEEEEEEeCC
Confidence            9999998753

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.54  E-value=1.6e-06  Score=54.62  Aligned_cols=78  Identities=18%  Similarity=0.409  Sum_probs=54.0

Q ss_pred             CCCeEEEEEEEeecC------CCeEEEEECCE------E--ecc----------CCcEEEEec-CceeEEEEccCCCCCC
Q psy12131         63 PDMRAEIICNVYANP------PAKVEWFRDGT------A--ITL----------GGRIDMHVS-SEKHSLLVRHIKDTDF  117 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~------~~~~~w~~~~~------~--~~~----------~~~~~~~~~-~~~~~l~i~~~~~~d~  117 (245)
                      .|++++|.|.....|      ...+.|++...      .  +..          ..++.+... .....|.|.+++.+|.
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            488999999987653      34799998431      1  110          122222211 2346899999999999


Q ss_pred             eEEEEEEEeCCceeEEEEEEEec
Q psy12131        118 GNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus       118 g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      |.|.|.+.+..+.....+.|.+.
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEE
Confidence            99999999988888777777653

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.54  E-value=2.8e-07  Score=55.70  Aligned_cols=43  Identities=23%  Similarity=0.411  Sum_probs=34.1

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ++.+.. ...|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus        44 ~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V   86 (86)
T cd05724          44 RVRIVD-DGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV   86 (86)
T ss_pred             CEEEcc-CCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence            455554 4569999999999999999999999886566666653

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.53  E-value=1.5e-07  Score=57.41  Aligned_cols=35  Identities=37%  Similarity=0.586  Sum_probs=31.6

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ..|.|.+++.+|+|.|+|.|.|..|. ..+++.|.|
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~sa~L~V   89 (90)
T cd04974          55 EVLYLRNVSFDDAGEYTCLAGNSIGP-SHHSAWLTV   89 (90)
T ss_pred             ceEEEeccccccCcEEEEEeecccCc-ccCCEEEEe
Confidence            46999999999999999999999998 677888877

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=98.53  E-value=3.1e-07  Score=53.20  Aligned_cols=37  Identities=24%  Similarity=0.340  Sum_probs=30.7

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      .+..|.|.+++.+|+|.|+|.|.|..|. ....+.+.|
T Consensus        33 ~~~~L~I~~v~~~D~G~YtC~a~N~~g~-~~~~~~~~~   69 (71)
T cd04976          33 SGHSLTIKDVTEEDAGNYTVVLTNKQAK-LEKRLTFTL   69 (71)
T ss_pred             CCCEEEECcCCHHHCEEEEEEEEcCCcc-EEEEEEEEE
Confidence            4567999999999999999999999887 556555554

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.53  E-value=9.4e-07  Score=56.69  Aligned_cols=72  Identities=15%  Similarity=0.370  Sum_probs=52.8

Q ss_pred             ecceEEecCCCeEEEEEEEee--cCCCeEEEEEC--CE-E---e-------------ccCCcEEEEecC--ceeEEEEcc
Q psy12131         55 EKQWIHTAPDMRAEIICNVYA--NPPAKVEWFRD--GT-A---I-------------TLGGRIDMHVSS--EKHSLLVRH  111 (245)
Q Consensus        55 ~~~~~~~~~g~~~~l~C~~~~--~~~~~~~w~~~--~~-~---~-------------~~~~~~~~~~~~--~~~~l~i~~  111 (245)
                      .+..+.+.+|+.+.|.|.+.+  .+.+.+.|++.  +. +   +             ....++.+....  ....|.|.+
T Consensus         4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   83 (116)
T cd04982           4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN   83 (116)
T ss_pred             cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence            355677889999999999987  56778999983  21 1   0             012345544443  467899999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy12131        112 IKDTDFGNYMCQASN  126 (245)
Q Consensus       112 ~~~~d~g~y~C~~~n  126 (245)
                      ++.+|.|.|.|.+..
T Consensus        84 ~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          84 LEKEDSATYYCAYWE   98 (116)
T ss_pred             CCHHHCEEEEEEEec
Confidence            999999999999874

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=98.51  E-value=1.9e-07  Score=53.79  Aligned_cols=36  Identities=28%  Similarity=0.313  Sum_probs=28.6

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVN   45 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~   45 (245)
                      +..|.|.++..+|+|.|+|.|.|..|.. ...++.|.
T Consensus        33 ~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864          33 GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            4569999999999999999999999873 33444443

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.50  E-value=5.8e-07  Score=52.88  Aligned_cols=36  Identities=33%  Similarity=0.358  Sum_probs=31.6

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ...|.|.+++.+|+|.|+|.|.|..|. ....+.|.|
T Consensus        40 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   75 (76)
T cd05867          40 SGALILTDVQPSDTAVYQCEARNRHGN-LLANAHVHV   75 (76)
T ss_pred             CCEEEECCCChhhCEEEEEEEECCCCe-EEEEEEEEE
Confidence            456999999999999999999999998 677777776

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>KOG3515|consensus

Probab=98.49  E-value=1.3e-06  Score=71.54  Aligned_cols=226  Identities=15%  Similarity=0.163  Sum_probs=116.7

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCc--eeeEEEEEEecCCe---EEeecceEEecCCCeEEEEEEEe-ecCCCeEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGES--TSKNFIVNVIYPPE---VSVEKQWIHTAPDMRAEIICNVY-ANPPAKVEW   83 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~~~p~---~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~w   83 (245)
                      .+.|.+...+.+|.|+|+|.|.+..-..  ......+.+..+..   +..........+|+.+.|.|.+. +.|.+.+.|
T Consensus       162 ~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w  241 (741)
T KOG3515|consen  162 PSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTW  241 (741)
T ss_pred             ccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhh
Confidence            4558999999999999999999863222  22333334432221   11122334567899999999774 567789999


Q ss_pred             EECCEEeccCCcEEEEecCc--eeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCC-CCccccCccccCCCeeEE
Q psy12131         84 FRDGTAITLGGRIDMHVSSE--KHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPN-IPVFQKSSRRLGPDGYRL  160 (245)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~l  160 (245)
                      +++...+...........+.  .+.+.+..-.....-...|.+.| .........+...+. .++.........+++..+
T Consensus       242 ~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~  320 (741)
T KOG3515|consen  242 YKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN-LLAASQITAVQVKPTAVPISTSDSGLSSGRSARS  320 (741)
T ss_pred             ccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC-ccccceeeecccccccccccCccccccccccccc
Confidence            99877655431111111111  11222222222234456799998 221111111111111 122222223466778888


Q ss_pred             EEEeCCCCCceEEEEEEEeecCCCCeEE--EeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEE
Q psy12131        161 VWQVDTYSGIIQYLLKFREREELTPWRN--IVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVF  238 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~  238 (245)
                      .|...+..|...+. ||++.+    |.+  ...................+..+...+...+.|.|.|..+....|....+
T Consensus       321 ~c~~sss~p~~~i~-w~~~~~----~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l  395 (741)
T KOG3515|consen  321 SCVSSSSKPPAHIA-WYKDTK----MPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLL  395 (741)
T ss_pred             ceeccCCCCcccee-eeccCc----ccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceec
Confidence            88874433333333 222222    111  11111222222333455556666777777888889888865554444444


Q ss_pred             ecC
Q psy12131        239 ATE  241 (245)
Q Consensus       239 ~t~  241 (245)
                      ...
T Consensus       396 ~~l  398 (741)
T KOG3515|consen  396 PVL  398 (741)
T ss_pred             ccc
Confidence            333

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.48  E-value=1.3e-06  Score=53.61  Aligned_cols=75  Identities=13%  Similarity=0.185  Sum_probs=50.3

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      |.+...+ ...+..|++++|.|.... ....+.|++++...................+.|..++.+|+|.|+|....
T Consensus         2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            5555554 344779999999998764 44579999987653211000011122355789999999999999999753

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.48  E-value=4.7e-07  Score=55.50  Aligned_cols=37  Identities=22%  Similarity=0.330  Sum_probs=31.3

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      .+..|.|.+++.+|+|.|+|.+.|..|. ....+.|.|
T Consensus        58 ~~~~L~I~~~~~~DsG~Y~C~~~N~~g~-~~~~~~L~v   94 (94)
T cd05756          58 QKDLLWFLPAALEDSGLYTCVVRNSTYC-MKVSISLTV   94 (94)
T ss_pred             cCCeEEEccCCcccCeEEEEEEcCCCcc-EEEEEEEEC
Confidence            4567999999999999999999998887 666776654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.48  E-value=3.8e-07  Score=54.41  Aligned_cols=36  Identities=33%  Similarity=0.408  Sum_probs=31.6

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ...|.|.+++.+|+|.|+|.|.|..|. ....+.|.|
T Consensus        46 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v   81 (81)
T cd05765          46 IGQLVIYNAQPQDAGLYTCTARNSGGL-LRANFPLSV   81 (81)
T ss_pred             ccEEEEccCCcccCEEEEEEEecCCce-EEEEEEEeC
Confidence            356999999999999999999999998 677777764

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.48  E-value=4.8e-07  Score=52.93  Aligned_cols=36  Identities=33%  Similarity=0.542  Sum_probs=30.9

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ..+|.|.++..+|+|.|+|.|.|..|. .++.+.|.|
T Consensus        39 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v   74 (74)
T cd05764          39 NGTLDILITTVKDTGSFTCIASNAAGE-ATATVELHI   74 (74)
T ss_pred             CCEEEEEECChhhCEEEEEEEECCCCe-EEEEEEEEC
Confidence            356999999999999999999999987 677777654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.48  E-value=3e-06  Score=52.87  Aligned_cols=76  Identities=20%  Similarity=0.313  Sum_probs=50.4

Q ss_pred             EecCCCeEEEEEEEeecCCCeEEEEECCE-----Ee----c----------cCCcEEEEecCceeEEEEccCCCCCCeEE
Q psy12131         60 HTAPDMRAEIICNVYANPPAKVEWFRDGT-----AI----T----------LGGRIDMHVSSEKHSLLVRHIKDTDFGNY  120 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~~~~~w~~~~~-----~~----~----------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  120 (245)
                      .+.+|+++.|.|.........+.|++...     .+    .          ..++..+.   .+.+|.|.++...|.|.|
T Consensus         9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~---~ngSL~I~~v~~~D~G~Y   85 (105)
T cd05774           9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIY---PNGSLLIQNVTQKDTGFY   85 (105)
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEe---CCCcEEEecCCcccCEEE
Confidence            46789999999976533334899999521     11    0          01222222   234899999999999999


Q ss_pred             EEEEEeCC-ceeEEEEEEE
Q psy12131        121 MCQASNNL-GSSQQFIQLS  138 (245)
Q Consensus       121 ~C~~~n~~-g~~~~~~~~~  138 (245)
                      .|.+.+.. ......+.+.
T Consensus        86 ~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          86 TLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             EEEEEeCCccEEEEEEEEE
Confidence            99999876 3444444443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.47  E-value=5.6e-07  Score=55.61  Aligned_cols=35  Identities=43%  Similarity=0.634  Sum_probs=30.6

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +.|.|.+++.+|+|.|+|.|.|..|. .+.++.|.|
T Consensus        62 ~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~s~~l~v   96 (96)
T cd05732          62 SSLTLKDVQLTDAGRYDCEASNRIGG-DQQSMYLEV   96 (96)
T ss_pred             EEEEECcCCcCcCEEeEEEEEeCCCC-cEEEEEEeC
Confidence            57999999999999999999999998 577776654

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.47  E-value=3.9e-07  Score=56.66  Aligned_cols=37  Identities=27%  Similarity=0.342  Sum_probs=32.6

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      .+.|.|.+++.+|+|.|+|.|.|..|. .+.++.|.|.
T Consensus        64 ~s~L~I~~v~~~D~G~Ytc~A~N~~g~-~~~t~~l~V~  100 (101)
T cd05859          64 VSKLKLIRAKEEDSGLYTALAQNEDAV-KSYTFALQIQ  100 (101)
T ss_pred             ccEEEEeeCCHHHCEEEEEEEEcCCce-EEEEEEEEEE
Confidence            467999999999999999999999988 6778887774

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.47  E-value=5.8e-07  Score=52.88  Aligned_cols=39  Identities=33%  Similarity=0.328  Sum_probs=33.2

Q ss_pred             EeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          7 LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         7 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ...+..|.|.+++.+|+|.|+|.|.|..|. ..+.+.|.|
T Consensus        37 ~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~V   75 (76)
T cd04978          37 RVDGGTLILSNVQPNDTAVYQCNASNVHGY-LLANAFVHV   75 (76)
T ss_pred             EccCCEEEECCCChhhCEEEEEEEEccCCe-EEEeEEEEE
Confidence            334567999999999999999999999988 677777776

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.46  E-value=3.7e-06  Score=52.14  Aligned_cols=75  Identities=23%  Similarity=0.420  Sum_probs=49.8

Q ss_pred             CeEEEEEEEeecC---CCeEEEEECCEE----e-----------cc--CCcEEEEecC-ceeEEEEccCCCCCCeEEEEE
Q psy12131         65 MRAEIICNVYANP---PAKVEWFRDGTA----I-----------TL--GGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQ  123 (245)
Q Consensus        65 ~~~~l~C~~~~~~---~~~~~w~~~~~~----~-----------~~--~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~  123 (245)
                      +++.|.|.....+   ...+.|++....    +           ..  ..+..+.... ....|.|.+++.+|.|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999987654   347999984321    0           00  1111111111 356899999999999999999


Q ss_pred             EEe-CCceeEEEEEEEe
Q psy12131        124 ASN-NLGSSQQFIQLSG  139 (245)
Q Consensus       124 ~~n-~~g~~~~~~~~~~  139 (245)
                      +.. ..|.....+.|.+
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            875 6677777777765

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=98.46  E-value=6.2e-07  Score=54.91  Aligned_cols=35  Identities=26%  Similarity=0.400  Sum_probs=30.1

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      .+|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus        58 ~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~v~v   92 (92)
T cd05737          58 ASLTIKGVSSEDSGKYGIVVKNKYGG-ETVDVTVSV   92 (92)
T ss_pred             EEEEEccCChhhCEEEEEEEEECCCc-ceEEEEEeC
Confidence            46999999999999999999999988 566666654

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.46  E-value=5.6e-07  Score=55.15  Aligned_cols=44  Identities=20%  Similarity=0.248  Sum_probs=36.1

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +|+.+..+ .+|.|.+++.+|+|.|+|.+....+......+.|.|
T Consensus        49 ~R~~~~~~-~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~v   92 (92)
T cd05741          49 GRETIYPN-GSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLRV   92 (92)
T ss_pred             CeEEEcCC-ceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEEC
Confidence            57788776 669999999999999999999887665666776654

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.46  E-value=2.4e-07  Score=56.48  Aligned_cols=35  Identities=40%  Similarity=0.581  Sum_probs=31.3

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +.|.|.+++.+|+|.|+|.|.|..|. ...++.|.|
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~a~L~V   89 (90)
T cd05858          55 EVLYLRNVTFEDAGEYTCLAGNSIGI-SHHSAWLTV   89 (90)
T ss_pred             eEEEEccCCHHHCEEEEEEEEeCCCc-ccceEEEEE
Confidence            46999999999999999999999998 677777776

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.45  E-value=6e-07  Score=53.21  Aligned_cols=40  Identities=25%  Similarity=0.509  Sum_probs=31.0

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN   45 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~   45 (245)
                      |+.+.  +..|.|.+++.+|+|.|+|.|.|..|. ....+.|+
T Consensus        39 ~~~~~--~~~L~I~~~~~~DsG~Y~C~a~n~~g~-~~~~~~v~   78 (79)
T cd04973          39 RTRIT--GEEVQIKDAVPRDSGLYACVTSSPSGS-DTTYFSVN   78 (79)
T ss_pred             eEEEe--CCEEEECCCChhhCEEEEEEEeCCCCc-ccEEEEEe
Confidence            45543  346999999999999999999998876 45555554

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.44  E-value=9.8e-07  Score=54.46  Aligned_cols=45  Identities=18%  Similarity=0.379  Sum_probs=36.3

Q ss_pred             cceEEEe---ecceEEEeccCCCCCEEEEEEEEcC-CCCceeeEEEEEEe
Q psy12131          2 KEIELLY---NRESLDLDRVTLKLAGLYQCIASNN-IGESTSKNFIVNVI   47 (245)
Q Consensus         2 ~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~~l~v~   47 (245)
                      +|+.+..   ++++|.|.+++.+|+|.|+|.+.+. .|. .++.+.|.|.
T Consensus        51 ~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~v~t~P~g~-~~~~~~L~V~   99 (99)
T cd05886          51 ERVTFKNPSFEDGTISLSRLELEDEGVYICEFATFPTGN-RESQLNLTVY   99 (99)
T ss_pred             CcEEEcCCCCCcceEEEcCCccccCEEEEEEEEeCCCCC-eEEEEEEEEC
Confidence            5777663   3477999999999999999999994 454 7888888873

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.43  E-value=7e-07  Score=53.80  Aligned_cols=38  Identities=24%  Similarity=0.430  Sum_probs=32.1

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      .....|.|.+++.+|+|.|+|.|.|..|. ...++.|.|
T Consensus        48 ~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v   85 (85)
T cd05857          48 NQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDV   85 (85)
T ss_pred             CCceEEEEccCCcccCEEEEEEEEeCCCE-EEEEEEEEC
Confidence            34556999999999999999999999998 677777764

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.43  E-value=8.5e-07  Score=55.33  Aligned_cols=44  Identities=18%  Similarity=0.129  Sum_probs=35.2

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +|..+..+++ |.|.+++.+|+|.|+|.+.+.......+.+.|.|
T Consensus        62 gR~~~~~ngS-L~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~V  105 (105)
T cd05774          62 GRETIYPNGS-LLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQV  105 (105)
T ss_pred             CcEEEeCCCc-EEEecCCcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence            6778887665 9999999999999999999876544566666653

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.43  E-value=8e-06  Score=52.02  Aligned_cols=73  Identities=16%  Similarity=0.325  Sum_probs=49.9

Q ss_pred             ceEEecCCCeEEEEEEEeecC----CCeEEEEE---------------CCEEec-cC----CcEEEEe--cCceeEEEEc
Q psy12131         57 QWIHTAPDMRAEIICNVYANP----PAKVEWFR---------------DGTAIT-LG----GRIDMHV--SSEKHSLLVR  110 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~----~~~~~w~~---------------~~~~~~-~~----~~~~~~~--~~~~~~l~i~  110 (245)
                      ..+.+..|+.+.|.|......    ...+.|..               ++.... ..    .+..+..  .....++.|.
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~   85 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH   85 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence            345678999999999997643    35899933               232221 11    1222221  2345689999


Q ss_pred             cCCCCCCeEEEEEEEeCCc
Q psy12131        111 HIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus       111 ~~~~~d~g~y~C~~~n~~g  129 (245)
                      +++.+|.|.|.|.+.|..+
T Consensus        86 nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          86 NLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             cCCcccCEEEEEEEEcCCC
Confidence            9999999999999999765

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.43  E-value=6e-07  Score=53.97  Aligned_cols=36  Identities=31%  Similarity=0.476  Sum_probs=30.8

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      .+.|.|.+++.+|+|.|+|.|.|..|. .+++..|.|
T Consensus        48 ~s~L~I~~v~~~DsG~Y~C~a~n~~~~-~~~s~~v~v   83 (84)
T cd05742          48 SSTLTIPNATLKDSGTYTCAASSGTMD-QKESTKVNI   83 (84)
T ss_pred             EEEEEECCCChhhCEEEEEEEccCCCc-eEEEEEEEE
Confidence            457999999999999999999999887 566776665

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.43  E-value=5.1e-06  Score=52.58  Aligned_cols=78  Identities=17%  Similarity=0.371  Sum_probs=52.8

Q ss_pred             CCCeEEEEEEEeecC----------CCeEEEEEC--CEEe--c--c----------CCcEEEE---ecCceeEEEEccCC
Q psy12131         63 PDMRAEIICNVYANP----------PAKVEWFRD--GTAI--T--L----------GGRIDMH---VSSEKHSLLVRHIK  113 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~----------~~~~~w~~~--~~~~--~--~----------~~~~~~~---~~~~~~~l~i~~~~  113 (245)
                      .|++++|.|.....+          ...+.|++.  +...  .  .          ..++.+.   .......|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            378999999997543          257999983  1110  0  0          1122221   12345789999999


Q ss_pred             CCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131        114 DTDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus       114 ~~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      .+|.|.|.|.+..........+.|.+.
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            999999999999876667777776653

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.43  E-value=9.3e-07  Score=51.96  Aligned_cols=37  Identities=32%  Similarity=0.498  Sum_probs=32.5

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ++..|.|.+++.+|+|.|+|.|.|..|. ..+++.|.|
T Consensus        39 ~~~~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~v   75 (76)
T cd05868          39 DGDTIIFSKVQERSSAVYQCNASNEYGY-LLANAFVNV   75 (76)
T ss_pred             cCCEEEECCCCHhhCEEEEEEEEcCCCE-EEEEEEEEe
Confidence            3456999999999999999999999998 688888876

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.42  E-value=1.3e-06  Score=53.05  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=32.5

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      .+..|.|.+++.+|+|.|+|.|.|..|. ....+.|.|
T Consensus        51 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   87 (88)
T cd04968          51 SGAVLKIPNIQFEDEGTYECEAENIKGK-DTHQGRIYV   87 (88)
T ss_pred             eCCEEEECCCCcccCEEEEEEEEECCCc-EEEEEEEEE
Confidence            4567999999999999999999999998 677777776

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>KOG3515|consensus

Probab=98.42  E-value=5.7e-06  Score=67.86  Aligned_cols=231  Identities=13%  Similarity=0.017  Sum_probs=133.9

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCC--e
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--K   80 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~   80 (245)
                      ++.+..+...+.+.++...|.|.|.|.+.|..|. ....+.+.+...|.............++++.+.|.....+.-  .
T Consensus       450 ~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg-~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m  528 (741)
T KOG3515|consen  450 VVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGG-AQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQM  528 (741)
T ss_pred             eEEeeccccccccceeeeccCCcceeeeccCCCc-eeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhh
Confidence            3444555554557889999999999999999888 566666778888887766666777788888999998765543  5


Q ss_pred             EEEEECCEEeccC--CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE-EEEEEecC------CCCccccCcc
Q psy12131         81 VEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FIQLSGIP------NIPVFQKSSR  151 (245)
Q Consensus        81 ~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~~~~~~------~~p~~~~~~~  151 (245)
                      +.|.+.+......  .............+.+.....-.++.|.|.+.+ .+.... ...+.+.+      .+|..... .
T Consensus       529 ~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~-~~~pA~~~~~l~~~s~~~v~~~tp~~~~~-~  606 (741)
T KOG3515|consen  529 HHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDG-SSPPAGLSLVLKAYSALIVTVRTPNMYTA-Q  606 (741)
T ss_pred             hcccccCCCCcccccccccccccCCccceeecccccccccceEEeecC-CCCccccceEEEecccccccccCCceeee-c
Confidence            7898877654321  111122222344566666666667999999999 433222 22222221      11111111 1


Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      ...+ .+.+.|.+.+. +...|........  .......+..-..     .....+..+.+..++..|.+.|.+.|.+|.
T Consensus       607 ~g~v-~as~~~~a~~~-~~~~~~~~k~p~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~y~~~c~t~n~lg~  679 (741)
T KOG3515|consen  607 EGCV-NASDDCVASGV-PSTSFTTAKTPLQTTEGPHIREKATQQG-----QTHSSSEWILNHIDGSDYENGCTTQNLLGS  679 (741)
T ss_pred             cCcc-cccccceeccc-ccceeecccCCCcccCCceEEEeeeecc-----ccccccccccCCcchhhhcceeeecccCCC
Confidence            1111 66777744433 2223332111111  1111111111111     111234455677788899999999999999


Q ss_pred             CCCCcceEEecCCC
Q psy12131        230 SRPSKAYVFATEGA  243 (245)
Q Consensus       230 ~~~s~~~~~~t~~~  243 (245)
                      ++-+-.++--+.+.
T Consensus       680 ~~v~~~~~~~t~~~  693 (741)
T KOG3515|consen  680 DHVSGAIHSGTASV  693 (741)
T ss_pred             ccccceecCCcCCC
Confidence            88777655544443

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=98.42  E-value=6.2e-07  Score=52.76  Aligned_cols=35  Identities=34%  Similarity=0.472  Sum_probs=29.7

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN   45 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~   45 (245)
                      .+.|.|.++..+|+|.|+|.|.|..|. .++++.+.
T Consensus        43 ~~~L~i~~~~~~D~G~YtC~A~N~~G~-~~~~~~~~   77 (79)
T cd05855          43 HGCLQLDNPTHLNNGIYTLVAKNEYGE-DEKNVSAH   77 (79)
T ss_pred             EEEEEECCCCcccCEEEEEEEEcCCcc-cceEEEee
Confidence            346999999999999999999999998 56666553

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.42  E-value=8.2e-07  Score=53.30  Aligned_cols=38  Identities=24%  Similarity=0.427  Sum_probs=31.5

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCC-CceeeEEEEEEe
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVI   47 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~   47 (245)
                      .+.|.|.+++.+|+|.|+|.|.+..+ ...++++.|+|.
T Consensus        45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~   83 (84)
T cd05861          45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH   83 (84)
T ss_pred             EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence            46799999999999999999998765 236778888774

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.41  E-value=6.6e-07  Score=53.18  Aligned_cols=34  Identities=32%  Similarity=0.410  Sum_probs=29.2

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN   45 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~   45 (245)
                      +.|.|.+++..|+|.|+|.|.|..|. .++.+.|.
T Consensus        46 ~~L~I~~~~~~D~G~YtC~A~N~~G~-~~~~~~~~   79 (81)
T cd04971          46 GCLQFDNPTHVNNGNYTLVASNEYGQ-DSKSISAH   79 (81)
T ss_pred             EEEEECCCCcccCeEEEEEEEeCCCC-eeeEEEee
Confidence            45999999999999999999999998 56666554

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.41  E-value=1.1e-06  Score=55.51  Aligned_cols=45  Identities=18%  Similarity=0.341  Sum_probs=36.5

Q ss_pred             cceEEEe-----ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          2 KEIELLY-----NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         2 ~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      +|+++..     +.++|+|.+++.+|+|.|+|.+.+.... .+..+.|.|.
T Consensus        60 ~R~sl~~~~~~~~~asL~I~nl~~sDsG~Y~C~V~~g~~~-~~~~v~l~v~  109 (112)
T cd05900          60 DRVSLPNYPAIPSDATLEITELRSNDSGTYRCEVMHGIED-NYDTVEVQVK  109 (112)
T ss_pred             CeEEecccCCCCCCcEEEEeecccccCEEEEEEEecCCCC-ceeEEEEEEE
Confidence            4777754     6788999999999999999999976555 5777777765

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.41  E-value=1.4e-06  Score=54.23  Aligned_cols=44  Identities=16%  Similarity=0.249  Sum_probs=35.1

Q ss_pred             cceEEEe----ecceEEEeccCCCCCEEEEEEEEcC-CCCceeeEEEEEE
Q psy12131          2 KEIELLY----NRESLDLDRVTLKLAGLYQCIASNN-IGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~~l~v   46 (245)
                      +|+.+..    ++.+|+|.+++.+|+|.|+|.+.+. .|. ..+.+.|.|
T Consensus        51 ~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C~v~~~p~g~-~~~~~~L~V   99 (100)
T cd05888          51 GRVRFETPNPIADGALILRNAVQADEGKYKCRVITFPAGN-FEAELVLTV   99 (100)
T ss_pred             CcEEEeCCCCCCceEEEEecCccccceEEEEEEEeCCCCC-eeeEEEEEe
Confidence            5777763    2567999999999999999999974 455 577888876

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.40  E-value=8.5e-07  Score=56.07  Aligned_cols=40  Identities=25%  Similarity=0.371  Sum_probs=35.5

Q ss_pred             ceEEEeccC-CCCCEEEEEEEEcCCCCceeeEEEEEEecCCe
Q psy12131         11 ESLDLDRVT-LKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   51 (245)
Q Consensus        11 ~~L~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~   51 (245)
                      +.|.|.++. .+|.|.|+|.|.|..|. ....+.|.|..+|.
T Consensus        69 s~L~I~~v~~~~D~G~Y~C~A~N~~G~-~~~~i~L~~~~~p~  109 (109)
T cd05773          69 SILTIINVSAALDYALFTCTAHNSLGE-DSLDIQLVSTSRPD  109 (109)
T ss_pred             eEEEECcCCccCCCEEEEEEEEeCCcc-CcEEEEEEecCCCC
Confidence            569999997 59999999999999998 68899999987773

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.39  E-value=1.1e-06  Score=51.71  Aligned_cols=32  Identities=25%  Similarity=0.543  Sum_probs=27.3

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNF   42 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   42 (245)
                      .+.|.|.+++.+|+|.|+|.+.|..|. .+.++
T Consensus        43 ~~~L~I~~~~~~DsG~Y~C~a~N~~g~-~~~~~   74 (76)
T cd05895          43 SSELQISKASLADNGEYKCMVSSKLGN-DSVTA   74 (76)
T ss_pred             EEEEEECcCCcccCEEEEEEEEeCCCc-eeEEE
Confidence            466999999999999999999999887 45444

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.39  E-value=6.9e-07  Score=53.41  Aligned_cols=36  Identities=31%  Similarity=0.528  Sum_probs=30.8

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ...|.|.+++.+|+|.|+|.|.|..|. ..+.+.|.|
T Consensus        47 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~v~v   82 (82)
T cd05856          47 KWTLSLKNLKPEDSGKYTCHVSNRAGE-INATYKVDV   82 (82)
T ss_pred             eEEEEEccCChhhCEEEEEEEEcCCcc-EEEEEEEeC
Confidence            457999999999999999999999987 677776653

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.39  E-value=3.1e-07  Score=54.95  Aligned_cols=38  Identities=21%  Similarity=0.335  Sum_probs=32.7

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      .+..|.|.+++.+|+|.|+|.+.+..+...+..+.|+|
T Consensus        46 ~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~   83 (83)
T cd05753          46 SNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV   83 (83)
T ss_pred             CCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence            45679999999999999999999998876777777765

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.38  E-value=6.1e-07  Score=54.71  Aligned_cols=37  Identities=38%  Similarity=0.582  Sum_probs=32.0

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ..+.|.|.+++.+|+|.|+|.+.|..|. ..+.+.|.|
T Consensus        54 ~~~~L~I~~v~~~D~G~Y~C~~~n~~g~-~~~~~~l~V   90 (90)
T PF07679_consen   54 GSSSLTIKNVTREDAGTYTCVASNSSGE-ATASVNLTV   90 (90)
T ss_dssp             TEEEEEESSESGGGSEEEEEEEEETTEE-EEEEEEEEE
T ss_pred             ceeEEccCCCChhhCEEEEEEEEECCCE-EEEEEEEEC
Confidence            4567999999999999999999999877 677777765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.38  E-value=3.5e-06  Score=52.23  Aligned_cols=67  Identities=19%  Similarity=0.393  Sum_probs=48.5

Q ss_pred             EecCCCeEEEEEEEeec--CCCeEEEEECC---EE--ec---------cCCcEEEEecCceeEEEEccCCCCCCeEEEEE
Q psy12131         60 HTAPDMRAEIICNVYAN--PPAKVEWFRDG---TA--IT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ  123 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~--~~~~~~w~~~~---~~--~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  123 (245)
                      .+.+|++++|.|...+.  ....+.|++-.   .+  +.         ...++..........|.|.+++.+|.|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            36789999999998765  45679998721   11  10         12345554555667899999999999999999


Q ss_pred             EEe
Q psy12131        124 ASN  126 (245)
Q Consensus       124 ~~n  126 (245)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            875

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.36  E-value=1.5e-06  Score=51.26  Aligned_cols=42  Identities=26%  Similarity=0.473  Sum_probs=32.5

Q ss_pred             ceEEEeecceEEEeccCC----CCCEEEEEEEEcCCCCceeeEEEE
Q psy12131          3 EIELLYNRESLDLDRVTL----KLAGLYQCIASNNIGESTSKNFIV   44 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~~~~~~~~~~l   44 (245)
                      ++.+......|.|.++..    +|+|.|+|.|.|..|...+..+.|
T Consensus        31 ~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l   76 (77)
T cd05733          31 RVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL   76 (77)
T ss_pred             CEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence            555655567799999864    799999999999999865555544

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.36  E-value=2.1e-06  Score=52.51  Aligned_cols=45  Identities=20%  Similarity=0.231  Sum_probs=35.4

Q ss_pred             cceEEE---eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELL---YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +|+.+.   ..+++|.|.+++.+|+|.|+|.+.........++..|.|
T Consensus        48 ~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          48 GRVSFKNYSLLDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             CcEEEcCCCCCccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence            467764   345779999999999999999998665443788888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.35  E-value=1.9e-06  Score=50.70  Aligned_cols=43  Identities=26%  Similarity=0.444  Sum_probs=32.5

Q ss_pred             cceEEEeecceEEEeccCC----CCCEEEEEEEEcCCCCceeeEEEE
Q psy12131          2 KEIELLYNRESLDLDRVTL----KLAGLYQCIASNNIGESTSKNFIV   44 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~~~~~~~~~~l   44 (245)
                      .++.+...+.+|.|.++..    +|+|.|+|.|.|..|...+..+.|
T Consensus        30 ~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05875          30 PRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL   76 (77)
T ss_pred             CcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence            4566655667799998752    479999999999999866666554

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.35  E-value=1.2e-05  Score=51.38  Aligned_cols=74  Identities=19%  Similarity=0.368  Sum_probs=49.1

Q ss_pred             cceEEecCCCeEEEEEEEeecC----CCeEEEEEC----CEE--ec---------cCCc----EEEEe--cCceeEEEEc
Q psy12131         56 KQWIHTAPDMRAEIICNVYANP----PAKVEWFRD----GTA--IT---------LGGR----IDMHV--SSEKHSLLVR  110 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~----~~~~~w~~~----~~~--~~---------~~~~----~~~~~--~~~~~~l~i~  110 (245)
                      +..+.+.+|+++.|.|.....+    ...+.|++.    +..  +.         ...+    ..+..  ......|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4467788999999999986543    236999741    111  10         0111    11111  1235679999


Q ss_pred             cCCCCCCeEEEEEEEeCCc
Q psy12131        111 HIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus       111 ~~~~~d~g~y~C~~~n~~g  129 (245)
                      +++.+|.|.|.|.+.|..+
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             eCChhhCEEEEEEEEeCCC
Confidence            9999999999999998665

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.34  E-value=1.6e-06  Score=54.04  Aligned_cols=44  Identities=23%  Similarity=0.274  Sum_probs=35.0

Q ss_pred             cceEEEe-----ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLY-----NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +|+.+..     +..+|+|.+++.+|+|.|+|.+.+..+. ..+.+.|.|
T Consensus        51 ~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~i~l~v   99 (100)
T cd05713          51 GRTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQSDGFY-EEATVELKV   99 (100)
T ss_pred             ceEEeecccccCCcEEEEEEcCChhhCEEEEEEEecCCcE-EEEEEEEEE
Confidence            4666542     3467999999999999999999987665 677777776

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.34  E-value=1.3e-06  Score=54.93  Aligned_cols=45  Identities=22%  Similarity=0.310  Sum_probs=37.1

Q ss_pred             cceEEEe-----ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          2 KEIELLY-----NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         2 ~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      +|+++..     +..+|.|.+++.+|+|.|+|.+...... ..+.+.|.|.
T Consensus        58 gRvsl~~~~~~~~~asL~i~nv~~~D~G~Y~C~v~~g~~~-~~~~v~L~V~  107 (110)
T cd05902          58 GRVSLPGYPKNRYNASLVLSRLRYSDSGTYRCEVVLGIND-EQDTVPLEVT  107 (110)
T ss_pred             cEEEeecCCCCCceEEEEECCCCHHHCEEEEEEEEECCcc-cEEEEEEEEE
Confidence            5778864     5678999999999999999999986544 6788888875

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.34  E-value=1.1e-06  Score=53.04  Aligned_cols=37  Identities=32%  Similarity=0.389  Sum_probs=30.9

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      .+.|.|.+++.+|+|.|+|.|.|..|. ..+...|.|.
T Consensus        49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~-~~~~t~~~V~   85 (86)
T cd05862          49 SSTLTIENVTLSDLGRYTCTASSGQMI-AKNSTIVIVH   85 (86)
T ss_pred             eeEEEEecCCcccCEEEEEEEeecceE-ecccEEEEEe
Confidence            457999999999999999999998776 5666666664

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.33  E-value=2.4e-06  Score=52.34  Aligned_cols=41  Identities=15%  Similarity=0.413  Sum_probs=32.7

Q ss_pred             ceEEEee--cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12131          3 EIELLYN--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV   44 (245)
Q Consensus         3 ~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l   44 (245)
                      |+.+...  .+.|.|.+++.+|+|.|+|.|.|..|. ...++.|
T Consensus        49 ~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l   91 (92)
T cd05747          49 RHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGK-QEAQFTL   91 (92)
T ss_pred             cEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCC-EeEEEEe
Confidence            4455432  357999999999999999999999987 6666655

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>PHA03376 BARF1; Provisional

Probab=98.33  E-value=2.8e-05  Score=52.56  Aligned_cols=74  Identities=22%  Similarity=0.354  Sum_probs=51.0

Q ss_pred             eEEecCCCeEEEEEEEeec---CCCeEEEEECC----EEe-------------ccCCcEEEEecCceeEEEEccCCCCCC
Q psy12131         58 WIHTAPDMRAEIICNVYAN---PPAKVEWFRDG----TAI-------------TLGGRIDMHVSSEKHSLLVRHIKDTDF  117 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~---~~~~~~w~~~~----~~~-------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  117 (245)
                      .+.+..|+.+.|.|.....   ..-+|.|++.+    ..+             ....++.+..+.++-+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            3456679999999997522   33479999842    111             112334444455677999999999999


Q ss_pred             eEEEEEEEeCCcee
Q psy12131        118 GNYMCQASNNLGSS  131 (245)
Q Consensus       118 g~y~C~~~n~~g~~  131 (245)
                      |.|+|..+-.....
T Consensus       100 GtY~C~fQkge~~~  113 (221)
T PHA03376        100 GNYLCRMKLGETEV  113 (221)
T ss_pred             ceEEEEEEcCCCce
Confidence            99999998755433

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.32  E-value=1.8e-06  Score=51.96  Aligned_cols=36  Identities=28%  Similarity=0.526  Sum_probs=31.1

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +..|.|.+++.+|+|.|+|.|.|..|. ..+.+.|.|
T Consensus        50 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   85 (85)
T cd05728          50 AGDLRITKLSLSDSGMYQCVAENKHGT-IYASAELAV   85 (85)
T ss_pred             CCEEEEeeCCHHHCEEEEEEEECCCCe-EEEEEEEEC
Confidence            456999999999999999999999988 677777654

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.32  E-value=2.8e-05  Score=49.45  Aligned_cols=74  Identities=20%  Similarity=0.439  Sum_probs=52.0

Q ss_pred             eecceEEecCCCeEEEEEEEe-ecCCCeEEEEECCE-----Eec--c------------CCcEEEEec--CceeEEEEcc
Q psy12131         54 VEKQWIHTAPDMRAEIICNVY-ANPPAKVEWFRDGT-----AIT--L------------GGRIDMHVS--SEKHSLLVRH  111 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~w~~~~~-----~~~--~------------~~~~~~~~~--~~~~~l~i~~  111 (245)
                      ..+..+.+.+|+++.|.|... ......+.|++...     .+.  .            ..++.+...  .....|.|.+
T Consensus         6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~   85 (114)
T PF07686_consen    6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN   85 (114)
T ss_dssp             EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred             EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence            345677889999999999998 44556899997211     111  0            112222222  2356899999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy12131        112 IKDTDFGNYMCQASNN  127 (245)
Q Consensus       112 ~~~~d~g~y~C~~~n~  127 (245)
                      ++.+|.|.|.|.+...
T Consensus        86 l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   86 LQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             ESGGGEEEEEEEEEES
T ss_pred             CCcCcCEEEEEEEEEC
Confidence            9999999999999986

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.31  E-value=3.1e-06  Score=52.50  Aligned_cols=45  Identities=18%  Similarity=0.357  Sum_probs=34.9

Q ss_pred             cceEEEe---ecceEEEeccCCCCCEEEEEEEEc-CCCCceeeEEEEEEe
Q psy12131          2 KEIELLY---NRESLDLDRVTLKLAGLYQCIASN-NIGESTSKNFIVNVI   47 (245)
Q Consensus         2 ~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~~l~v~   47 (245)
                      +|+.+..   +..+|+|.+++.+|+|.|.|.+.. ..|. ..+.+.|.|.
T Consensus        50 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~-~~~~~~l~V~   98 (98)
T cd05718          50 GRVSFLNSSLEDATISISNLRLEDEGNYICEFATFPQGN-RQKVTTLTVL   98 (98)
T ss_pred             ceEEEeCCCCCceEEEEccCCcccCEEEEEEEEeCCCCc-EEEEEEEEeC
Confidence            4666654   456799999999999999999985 4455 6777877763

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.31  E-value=1.8e-06  Score=49.91  Aligned_cols=28  Identities=25%  Similarity=0.223  Sum_probs=24.4

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCC
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGE   36 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~   36 (245)
                      ++.+|.|.+++.+|+|.|+|.|.+....
T Consensus        34 ~~~~L~I~~v~~~D~G~YtC~a~~~~~~   61 (72)
T cd07702          34 DGYSLVIKDVTEEDAGIYTILLGIKQYN   61 (72)
T ss_pred             CCCEEEECcCCHHHCEEEEEEEEccccc
Confidence            4557999999999999999999997554

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.31  E-value=7.3e-06  Score=50.15  Aligned_cols=71  Identities=17%  Similarity=0.288  Sum_probs=48.0

Q ss_pred             CCeEEEEEEEeecCCCeEEEEECCEEecc------------------CCcEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         64 DMRAEIICNVYANPPAKVEWFRDGTAITL------------------GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~------------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      |++|+|.|.........+.|++.......                  ..++.+.   ....|.|.+++.+|+|.|.|.+.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~l~~~DsG~Y~c~v~   77 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIY---PNGSLLIQNLTKEDSGTYTLQII   77 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEc---CCceEEEccCCchhcEEEEEEEE
Confidence            68899999987655568999985422110                  0112221   23689999999999999999999


Q ss_pred             eCCce-eEEEEEE
Q psy12131        126 NNLGS-SQQFIQL  137 (245)
Q Consensus       126 n~~g~-~~~~~~~  137 (245)
                      ...+. ....+.|
T Consensus        78 ~~~~~~~~~~~~l   90 (92)
T cd05741          78 STNGVTENAKFFL   90 (92)
T ss_pred             cCCCcEEEEEEEE
Confidence            87643 3334443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.30  E-value=7.4e-06  Score=50.58  Aligned_cols=77  Identities=14%  Similarity=0.181  Sum_probs=50.5

Q ss_pred             cCCCeEEEEEEEee-cCCCeEEEEECCEEec--c-----------CCcE--EEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         62 APDMRAEIICNVYA-NPPAKVEWFRDGTAIT--L-----------GGRI--DMHVSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        62 ~~g~~~~l~C~~~~-~~~~~~~w~~~~~~~~--~-----------~~~~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      ..|++|+|.|.... .....+.|++....+.  .           ...+  ++.......+|+|.+++.+|.|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            36899999998754 3345799997542211  0           0111  12223345789999999999999999999


Q ss_pred             eCCcee-EEEEEEE
Q psy12131        126 NNLGSS-QQFIQLS  138 (245)
Q Consensus       126 n~~g~~-~~~~~~~  138 (245)
                      +..|.. ...+.|.
T Consensus        82 ~~~~~~~~~~f~L~   95 (97)
T cd05775          82 TKNGVTITKEFTLH   95 (97)
T ss_pred             cCCCCeEEEEEEEE
Confidence            876543 3444443

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.30  E-value=2.6e-06  Score=51.96  Aligned_cols=39  Identities=15%  Similarity=0.236  Sum_probs=29.7

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCCc---eeeEEEEEE
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGES---TSKNFIVNV   46 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~---~~~~~~l~v   46 (245)
                      .+...|.|.++..+|+|.|+|.+.+..+..   ....+.|.|
T Consensus        52 ~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~vtr~~~l~v   93 (95)
T cd05897          52 KGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYNITRIIKLRI   93 (95)
T ss_pred             CCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEEEEEEEEEEE
Confidence            345679999999999999999999986542   344555544

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.30  E-value=2.2e-06  Score=54.02  Aligned_cols=45  Identities=18%  Similarity=0.214  Sum_probs=36.2

Q ss_pred             cceEEEe---ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          2 KEIELLY---NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         2 ~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      +|+.+..   +..+|.|.+++.+|+|.|+|.+.+..+. ....+.|.|.
T Consensus        56 ~R~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~-~~~~~~l~v~  103 (106)
T cd05877          56 GRVFLRRAHDLDASLVITDLRLEDYGRYRCEVIDGLED-ESVVVALRLR  103 (106)
T ss_pred             CcEEecCCCCCcEEEEEccCChHHCEEEEEEEEecccc-eEEEEEEEEE
Confidence            4666642   3467999999999999999999987766 6788888875

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.29  E-value=3.4e-06  Score=53.28  Aligned_cols=45  Identities=20%  Similarity=0.361  Sum_probs=37.3

Q ss_pred             cceEEE-----eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          2 KEIELL-----YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         2 ~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      +|+++.     .++.+|.|.+++.+|+|.|+|.+...... ..+.+.|.|.
T Consensus        65 gRv~l~~~~~~~g~asL~i~~v~~sD~G~Y~C~V~~g~~~-~~~~v~L~V~  114 (117)
T cd05901          65 GRVSVPSHPEDQGDASLTIVKLRASDAGVYRCEVMHGIED-TQDTVSLDVS  114 (117)
T ss_pred             CcEEeeccCCcCCceEEEEcccccccCEEEEEEEEECCcc-cEEEEEEEEE
Confidence            577775     24688999999999999999999987666 6888888875

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.29  E-value=1.7e-06  Score=50.73  Aligned_cols=32  Identities=22%  Similarity=0.522  Sum_probs=27.3

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNF   42 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   42 (245)
                      ...|.|.+++.+|+|.|+|.|.|..|. ...++
T Consensus        42 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~   73 (75)
T cd05750          42 NSELQINKAKLADSGEYTCVVENILGN-DTVTA   73 (75)
T ss_pred             eEEEEEccCCcccCeEEEEEEEEcCCc-eeEEE
Confidence            457999999999999999999999987 44443

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.28  E-value=3.9e-05  Score=48.57  Aligned_cols=38  Identities=21%  Similarity=0.411  Sum_probs=32.5

Q ss_pred             ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131        103 EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus       103 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      ...+|.|.+++.+|.|.|.|.+..........+.|.+.
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            35799999999999999999999988777777777653

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.27  E-value=1.6e-05  Score=50.92  Aligned_cols=74  Identities=19%  Similarity=0.342  Sum_probs=48.4

Q ss_pred             cceEEecCCCeEEEEEEEeecC----CCeEEEEECCE------Eec----------cCCc----EEEEe--cCceeEEEE
Q psy12131         56 KQWIHTAPDMRAEIICNVYANP----PAKVEWFRDGT------AIT----------LGGR----IDMHV--SSEKHSLLV  109 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~----~~~~~w~~~~~------~~~----------~~~~----~~~~~--~~~~~~l~i  109 (245)
                      |..+.+..|+.++|.|......    ...+.|++...      .+.          ...+    +.+..  ......|+|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            4456778999999999986533    14699976211      110          0111    11111  123468999


Q ss_pred             ccCCCCCCeEEEEEEEeCCc
Q psy12131        110 RHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus       110 ~~~~~~d~g~y~C~~~n~~g  129 (245)
                      .+++.+|.|.|.|.+.|..+
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCC
Confidence            99999999999999998654

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.27  E-value=2.8e-06  Score=53.52  Aligned_cols=40  Identities=20%  Similarity=0.287  Sum_probs=33.6

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   48 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~   48 (245)
                      .+..+|+|.+++.+|+|.|+|.+.+..+. ..+.+.|.|..
T Consensus        65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~-~~~~v~L~V~~  104 (106)
T cd05714          65 PGDASLVITDLRLEDSGRYRCEVIDGIED-EQDTVELEVRG  104 (106)
T ss_pred             CCcceEEECCCCHHHCEEEEEEEEcCCCc-eEEEEEEEEEE
Confidence            35678999999999999999999987655 68888888753

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.27  E-value=2.8e-06  Score=51.75  Aligned_cols=36  Identities=25%  Similarity=0.364  Sum_probs=31.1

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ...|.|.+++.+|.|.|+|.|.|..|. ..+.+.|.|
T Consensus        55 ~~~L~I~~v~~~D~g~Y~C~A~N~~G~-~~~~~~L~v   90 (90)
T cd04972          55 IYNLQLSNITSETQTTVTCTAENPVGQ-ANVSVQVTV   90 (90)
T ss_pred             EEEEEEecCCcccCEEEEEEEECCCCc-eeEEEEEeC
Confidence            456999999999999999999999998 677777654

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.27  E-value=3.1e-06  Score=53.88  Aligned_cols=45  Identities=18%  Similarity=0.255  Sum_probs=33.7

Q ss_pred             cceEEE----eecceEEEeccCCCCCEEEEEEEEcCCCC-ceeeEEEEEE
Q psy12131          2 KEIELL----YNRESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v   46 (245)
                      +|+++.    .++.+|.|.+++.+|+|.|+|.+.|..+. .....+.|.|
T Consensus        67 ~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v  116 (116)
T cd05879          67 ERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV  116 (116)
T ss_pred             CceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence            477764    45577999999999999999999987653 2345565553

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.25  E-value=4.4e-06  Score=50.86  Aligned_cols=37  Identities=27%  Similarity=0.441  Sum_probs=29.7

Q ss_pred             ceEEEeccCCCCCEEEEEEEEc-CCCCceeeEEEEEEec
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASN-NIGESTSKNFIVNVIY   48 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~~l~v~~   48 (245)
                      ..|.|.+++++|+|.|+|.+.+ ..+. ..+.+.|.|..
T Consensus        53 ~~L~I~~~~~~DsG~Y~C~a~~~~~~~-~~~~~~l~v~~   90 (91)
T cd05871          53 RGLLLRSLQRSDAGVYTCTAVEHSFSQ-TLAKYTLHVIE   90 (91)
T ss_pred             CeEEEeeCChhHCEEEEEEEEccCCeE-EEEEEEEEEec
Confidence            4599999999999999999985 4443 56688888753

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.25  E-value=1.3e-05  Score=49.33  Aligned_cols=71  Identities=13%  Similarity=0.196  Sum_probs=46.9

Q ss_pred             EecCCCeEEEEEEEee-cCCCe--EEEEECCEEeccCCcEEE--EecCceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         60 HTAPDMRAEIICNVYA-NPPAK--VEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~-~~~~~--~~w~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      .+.+|+.++|.|.+.| .|.+.  +.|++++..+........  ......+++.+..-..+|...|+|.|.+..+.
T Consensus        12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP   87 (100)
T ss_pred             cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence            3578999999999976 45555  799999988864321110  01113456666644444445999999997653

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.25  E-value=1.6e-05  Score=51.00  Aligned_cols=74  Identities=14%  Similarity=0.293  Sum_probs=52.3

Q ss_pred             eecceEEecCCCeEEEEEEEeec-CCCeEEEEEC--CEE---e---------ccCCcEEEEe--cCceeEEEEccCCCCC
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYAN-PPAKVEWFRD--GTA---I---------TLGGRIDMHV--SSEKHSLLVRHIKDTD  116 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~w~~~--~~~---~---------~~~~~~~~~~--~~~~~~l~i~~~~~~d  116 (245)
                      ..+..+.+..|+++.|.|..... ....+.|++-  +..   +         ....++.+..  ......|.|.++..+|
T Consensus         4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D   83 (116)
T cd07706           4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED   83 (116)
T ss_pred             EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence            34556778999999999998754 4467999972  111   1         1123455432  2346789999999999


Q ss_pred             CeEEEEEEEeC
Q psy12131        117 FGNYMCQASNN  127 (245)
Q Consensus       117 ~g~y~C~~~n~  127 (245)
                      .|.|.|.+...
T Consensus        84 sg~Y~C~~~~~   94 (116)
T cd07706          84 SAKYFCALSTL   94 (116)
T ss_pred             CEEEEEEEECC
Confidence            99999998853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.24  E-value=6.8e-06  Score=50.09  Aligned_cols=28  Identities=25%  Similarity=0.272  Sum_probs=25.2

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCC
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGE   36 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~   36 (245)
                      .+..|.|.+++.+|+|.|+|.+.+..+.
T Consensus        50 ~~~~L~I~~v~~~DsG~YtC~~~n~~~~   77 (92)
T cd05757          50 KGSKLLIQNVTEEDAGNYTCKLTFTHNG   77 (92)
T ss_pred             cCCEEEEeeCChhhCEEEEEEEEecCCC
Confidence            4567999999999999999999998766

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.24  E-value=3.4e-06  Score=51.26  Aligned_cols=39  Identities=23%  Similarity=0.335  Sum_probs=32.5

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   48 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~   48 (245)
                      ...|.|.+++.+|+|.|+|.|.+..+....+++.|.|.+
T Consensus        50 ~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~~   88 (89)
T cd04979          50 EDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVLE   88 (89)
T ss_pred             CCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEec
Confidence            345999999999999999999987666578888888753

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.24  E-value=1.2e-05  Score=47.38  Aligned_cols=62  Identities=19%  Similarity=0.403  Sum_probs=42.8

Q ss_pred             EEEEEEEee-cCCCeEEEEECCEEeccCCcEEEEe-cC--ceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         67 AEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHV-SS--EKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        67 ~~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~-~~--~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +.|.|.+.| .|.+.|.|++++.++.......... .+  ..+.|.+..-...|...|+|.|.|+.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~   67 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPA   67 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcc
Confidence            578999976 5667999999998886543211111 11  24577776666666678999999965

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.24  E-value=4.6e-06  Score=49.08  Aligned_cols=42  Identities=26%  Similarity=0.514  Sum_probs=31.2

Q ss_pred             ceEEEeecceEEEeccCCC----CCEEEEEEEEcCCCCceeeEEEE
Q psy12131          3 EIELLYNRESLDLDRVTLK----LAGLYQCIASNNIGESTSKNFIV   44 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~----d~G~Y~C~~~~~~~~~~~~~~~l   44 (245)
                      ++.+...+++|.|..+..+    |.|.|+|.|.|..|...+..+.|
T Consensus        31 ~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05874          31 KVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI   76 (77)
T ss_pred             CEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence            4555555677999888753    78999999999999855555544

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.23  E-value=4.3e-06  Score=52.91  Aligned_cols=46  Identities=20%  Similarity=0.356  Sum_probs=36.5

Q ss_pred             cceEEE-----eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec
Q psy12131          2 KEIELL-----YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   48 (245)
Q Consensus         2 ~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~   48 (245)
                      +|+++.     .+.++|+|.+++.+|+|.|.|.+...... ..+.+.|.|..
T Consensus        58 gR~~~~~~~~~~~~asL~I~~l~~sD~G~Y~C~v~~~~~~-~~~~v~l~V~g  108 (110)
T cd05878          58 GRVSLPNYPENRGDASLEISRLRSSDSGVYRCEVMHGIED-EQDTVPLEVTG  108 (110)
T ss_pred             CeEEeccCCCCCCcEEEEECCCChhhCEEEEEEEEeCCCc-ceEEEEEEEEE
Confidence            566664     24577999999999999999999986544 67888888753

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.22  E-value=1.1e-05  Score=49.62  Aligned_cols=68  Identities=19%  Similarity=0.268  Sum_probs=47.2

Q ss_pred             cCCCeEEEEEEEeec-CC-CeEEEEECCEEeccCCc-EEEE-ecCc----eeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         62 APDMRAEIICNVYAN-PP-AKVEWFRDGTAITLGGR-IDMH-VSSE----KHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        62 ~~g~~~~l~C~~~~~-~~-~~~~w~~~~~~~~~~~~-~~~~-~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      ..|+.+.|.|.+.|. |. ..+.|++++..+..... .... ..+.    .+.|.+......+.+.|+|.+.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            368899999999997 53 58999999988765542 1111 1111    23455665555689999999998654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.22  E-value=4.4e-06  Score=51.37  Aligned_cols=43  Identities=23%  Similarity=0.329  Sum_probs=31.4

Q ss_pred             cceEEEe---ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLY---NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +|+++..   +..+|.|.+++.+|+|.|+|.+.+....  ++...|.|
T Consensus        50 ~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~~--~~~~~l~v   95 (95)
T cd07701          50 NRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPVK--TSKAYLTV   95 (95)
T ss_pred             CCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecCc--cEEEEEEC
Confidence            5666542   3357999999999999999999985433  55555543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.21  E-value=1.3e-05  Score=47.83  Aligned_cols=63  Identities=16%  Similarity=0.321  Sum_probs=40.4

Q ss_pred             EEEEEEEeec-CCCeEEEEECCEEeccCCcEEEEecCc----eeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         67 AEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        67 ~~l~C~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      +.|.|.+.+. |.+.+.|++++..+...........+.    .+.|.+......+.+.|+|.+.+...
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l   69 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL   69 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence            5799999764 778999999998876432111111111    23444444444456799999998754

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.21  E-value=2.1e-05  Score=48.09  Aligned_cols=78  Identities=15%  Similarity=0.160  Sum_probs=50.0

Q ss_pred             cccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCC
Q psy12131        151 RRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG  228 (245)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G  228 (245)
                      ....++.+.|.|...+.++. . ..||++..  ....-..+......       ...+.|.++...+...|.|.|.|.+|
T Consensus        12 ~v~eG~~v~L~C~v~g~P~p-~-i~W~k~~~~~~~~~~~~~~~~~~~-------~~~L~I~~~~~~D~G~Y~C~a~N~~G   82 (92)
T cd05891          12 TIMEGKTLNLTCTVFGNPDP-E-VIWFKNDQDIELSEHYSVKLEQGK-------YASLTIKGVTSEDSGKYSINVKNKYG   82 (92)
T ss_pred             EEcCCCEEEEEEEEEEeCCC-e-EEEEECCEECCCCCCEEEEEcCCC-------EEEEEECCCChhhCEEEEEEEEeCCC
Confidence            35788999999998655332 2 34555543  11111122221111       24688999999999999999999999


Q ss_pred             CCCCCcceE
Q psy12131        229 WSRPSKAYV  237 (245)
Q Consensus       229 ~~~~s~~~~  237 (245)
                      ....+..+.
T Consensus        83 ~~~~~~~v~   91 (92)
T cd05891          83 GETVDVTVS   91 (92)
T ss_pred             ceeeEEEEE
Confidence            887765554

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.20  E-value=2.6e-05  Score=46.55  Aligned_cols=62  Identities=13%  Similarity=0.291  Sum_probs=41.9

Q ss_pred             EEEEEEEeec-CCCeEEEEECCEEeccCCcEEEEecCc------eeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         67 AEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSE------KHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        67 ~~l~C~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      +.|.|.+.+. |.+.|.|++++..+..... .+...+.      .+.+.+......+...|+|.+.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            5799999875 7789999999988765432 2222211      13445545555567899999998753

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.20  E-value=5.5e-06  Score=50.82  Aligned_cols=42  Identities=19%  Similarity=0.244  Sum_probs=29.5

Q ss_pred             cceEEEee---cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12131          2 KEIELLYN---RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN   45 (245)
Q Consensus         2 ~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~   45 (245)
                      +|+.+...   ..+|.|.+++.+|+|.|+|.+.....  ..+...|+
T Consensus        50 ~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~~~--~~~~~~~~   94 (95)
T cd05882          50 NRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTMPV--RTAKATVT   94 (95)
T ss_pred             CeEEEEeCCCceEEEEECCCCcccCEEEEEEEEeecc--ccEEEEEE
Confidence            45554432   35799999999999999999997432  34555444

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.18  E-value=3.7e-05  Score=47.75  Aligned_cols=74  Identities=22%  Similarity=0.466  Sum_probs=48.2

Q ss_pred             eEEEEEEEeecC---CCeEEEEEC--CE---Eec---c----------CCcEEEEe--cCceeEEEEccCCCCCCeEEEE
Q psy12131         66 RAEIICNVYANP---PAKVEWFRD--GT---AIT---L----------GGRIDMHV--SSEKHSLLVRHIKDTDFGNYMC  122 (245)
Q Consensus        66 ~~~l~C~~~~~~---~~~~~w~~~--~~---~~~---~----------~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C  122 (245)
                      ++.|.|......   ...+.|++.  +.   .+.   .          .++..+..  ......|.|.+++.+|.|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            578999886443   337889872  11   111   0          01222221  2235689999999999999999


Q ss_pred             EEEe-CCceeEEEEEEEe
Q psy12131        123 QASN-NLGSSQQFIQLSG  139 (245)
Q Consensus       123 ~~~n-~~g~~~~~~~~~~  139 (245)
                      .+.+ +.|..+..+.|.+
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9997 6676666666654

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.16  E-value=5.4e-05  Score=47.67  Aligned_cols=77  Identities=17%  Similarity=0.342  Sum_probs=50.8

Q ss_pred             CCeEEEEEEEeecC-------CCeEEEEECC-----EEe----cc----------CCcEEEEe---cCceeEEEEccCCC
Q psy12131         64 DMRAEIICNVYANP-------PAKVEWFRDG-----TAI----TL----------GGRIDMHV---SSEKHSLLVRHIKD  114 (245)
Q Consensus        64 g~~~~l~C~~~~~~-------~~~~~w~~~~-----~~~----~~----------~~~~~~~~---~~~~~~l~i~~~~~  114 (245)
                      |.++.|.|...-.|       .+.+.|.+-.     ...    ..          ..+..+..   .....+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            67889999975322       3588898631     111    01          12333322   12467999999999


Q ss_pred             CCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131        115 TDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus       115 ~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      +|.|.|.|.+..........+.|.+.
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEE
Confidence            99999999999877666666666653

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.16  E-value=8.6e-05  Score=45.04  Aligned_cols=80  Identities=16%  Similarity=0.366  Sum_probs=47.9

Q ss_pred             CeEEeecceEEecCCCeEEEEEEE-eecCCCeEEEEECCEEeccCCcEEEE-ecC----ceeEEEEccCCCCCCeEEEEE
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMH-VSS----EKHSLLVRHIKDTDFGNYMCQ  123 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~g~y~C~  123 (245)
                      |.+.......... ++.+.+.|.+ .+.|.+.+.|+.++..+......... ...    ..+.|.+..-...+...++|.
T Consensus         1 p~I~~~~~~~~~~-~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~   79 (89)
T PF08205_consen    1 PEITPNPSLLEGE-GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCR   79 (89)
T ss_dssp             EEEEEECSEEESS-TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEE
T ss_pred             CEeeCCCeeEccc-ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEE
Confidence            3444444334333 7899999977 56788999999998776211111111 111    124566665444566789999


Q ss_pred             EEeCCce
Q psy12131        124 ASNNLGS  130 (245)
Q Consensus       124 ~~n~~g~  130 (245)
                      +.+..-.
T Consensus        80 ~~~~~~~   86 (89)
T PF08205_consen   80 ASHPALS   86 (89)
T ss_dssp             EEETTCC
T ss_pred             EECCccC
Confidence            9987543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.16  E-value=2e-05  Score=48.48  Aligned_cols=78  Identities=13%  Similarity=0.081  Sum_probs=45.5

Q ss_pred             ccccCCCeeEEEEEeCCCCCceEEEEEEEeec-CC---CCeEEEeeCCCCCCCcceeeeEEEecCCCCCc-eEEEEEEEE
Q psy12131        150 SRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE-EL---TPWRNIVIPSDGSLAGPIYTQSYNITGLQLFT-QYEASVLAK  224 (245)
Q Consensus       150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~y~~~v~a~  224 (245)
                      .....++.+.|.|.+.+.++.....+.|.... ..   ..+ .+....    ........|.|.++...+ ...|.|.|.
T Consensus        11 ~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~-~I~~~~----~~~g~~S~L~I~~~~~~d~~g~Y~C~a~   85 (98)
T cd05898          11 QYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERY-TVERTS----TGSGVLSTLTINNIMEADFQTHYNCTAW   85 (98)
T ss_pred             EEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCE-EEEEEc----cCCCcEEEEEECCCccccCCcEEEEEEE
Confidence            34578999999999966655543333333222 11   122 111111    111234789999987655 456777799


Q ss_pred             ecCCCCCC
Q psy12131        225 NRFGWSRP  232 (245)
Q Consensus       225 N~~G~~~~  232 (245)
                      |.+|....
T Consensus        86 N~~G~d~~   93 (98)
T cd05898          86 NSFGSGTA   93 (98)
T ss_pred             eCCccceE
Confidence            99998754

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.15  E-value=8.6e-06  Score=49.99  Aligned_cols=35  Identities=31%  Similarity=0.563  Sum_probs=28.3

Q ss_pred             cceEEEeccC-CCCCEEEEEEEEcCCCCceeeEEEE
Q psy12131         10 RESLDLDRVT-LKLAGLYQCIASNNIGESTSKNFIV   44 (245)
Q Consensus        10 ~~~L~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l   44 (245)
                      +..|.|.++. .+|+|.|+|.|.|..|...+..+.|
T Consensus        57 ~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l   92 (94)
T cd05848          57 DGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL   92 (94)
T ss_pred             CCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence            3569999985 6999999999999999865666554

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.14  E-value=0.0001  Score=45.54  Aligned_cols=36  Identities=17%  Similarity=0.385  Sum_probs=31.2

Q ss_pred             eeEEEEccCCCCCCeEEEEEEEe-CCceeEEEEEEEe
Q psy12131        104 KHSLLVRHIKDTDFGNYMCQASN-NLGSSQQFIQLSG  139 (245)
Q Consensus       104 ~~~l~i~~~~~~d~g~y~C~~~n-~~g~~~~~~~~~~  139 (245)
                      ..+|.|.+++.+|.|.|.|.+.+ +.|..+..+.|.+
T Consensus        62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            47899999999999999999999 6787777777765

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.13  E-value=1e-05  Score=50.13  Aligned_cols=42  Identities=14%  Similarity=0.250  Sum_probs=32.0

Q ss_pred             cceEEEeec------ceEEEeccCCC-CCEEEEEEEEcCCCCceeeEEEE
Q psy12131          2 KEIELLYNR------ESLDLDRVTLK-LAGLYQCIASNNIGESTSKNFIV   44 (245)
Q Consensus         2 ~~~~~~~~~------~~L~i~~~~~~-d~G~Y~C~~~~~~~~~~~~~~~l   44 (245)
                      +|+.+....      +.|.|.+++.+ |.|.|+|.|.|..|. ..+.+.|
T Consensus        49 ~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~-~~~~~~L   97 (98)
T cd05758          49 GRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGS-GTAIISL   97 (98)
T ss_pred             CCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCc-ccEEEEe
Confidence            456665432      46999999994 599999999999998 5666654

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.12  E-value=1.2e-05  Score=49.21  Aligned_cols=36  Identities=31%  Similarity=0.430  Sum_probs=29.1

Q ss_pred             cceEEEeccC-CCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12131         10 RESLDLDRVT-LKLAGLYQCIASNNIGESTSKNFIVN   45 (245)
Q Consensus        10 ~~~L~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~   45 (245)
                      +..|.|.++. .+|+|.|+|.|.|..|...+..+.|.
T Consensus        56 ~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   92 (93)
T cd05849          56 GGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS   92 (93)
T ss_pred             CCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence            4569999985 68999999999999998656666553

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.10  E-value=1.7e-05  Score=48.59  Aligned_cols=43  Identities=26%  Similarity=0.242  Sum_probs=32.0

Q ss_pred             cceEEEe---ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12131          2 KEIELLY---NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV   44 (245)
Q Consensus         2 ~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l   44 (245)
                      +|+.+..   .+.+|.|.|++.+|+|.|+|.+.........+.+.+
T Consensus        48 ~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~   93 (96)
T cd05889          48 GRVYFLNSTREDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV   93 (96)
T ss_pred             CeEEEecCCCCccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence            5777763   357799999999999999999987643324555443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.09  E-value=1.9e-05  Score=48.48  Aligned_cols=36  Identities=28%  Similarity=0.420  Sum_probs=29.2

Q ss_pred             cceEEEeccC-CCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12131         10 RESLDLDRVT-LKLAGLYQCIASNNIGESTSKNFIVN   45 (245)
Q Consensus        10 ~~~L~i~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~   45 (245)
                      +..|.|.++. ..|+|.|+|.|.|..|...+..+.|.
T Consensus        57 ~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   93 (94)
T cd05850          57 AGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR   93 (94)
T ss_pred             CCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence            3469998865 59999999999999998767666653

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.08  E-value=1.4e-05  Score=49.17  Aligned_cols=43  Identities=26%  Similarity=0.345  Sum_probs=30.3

Q ss_pred             cceEEEe---ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLY---NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +|+++..   +...|.|.+++.+|+|.|+|.+.....  ..+.+.|+|
T Consensus        50 ~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~--~~~~~~~~v   95 (95)
T cd05717          50 NRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV--QTAKATVTV   95 (95)
T ss_pred             CcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC--ceEEEEEEC
Confidence            4555532   235699999999999999999997643  355555543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=98.07  E-value=9.1e-05  Score=44.73  Aligned_cols=77  Identities=29%  Similarity=0.460  Sum_probs=57.3

Q ss_pred             CCCeeEEEEEeCCC--CCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        154 GPDGYRLVWQVDTY--SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       154 ~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      ...++.|.|.....  ..+..|.+++.... ...|..+......       ...+.+.+|.+++.|.+++.|.+..|.|.
T Consensus        13 ~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~-------~~~~~i~~l~p~~~Y~~~v~a~~~~~~~~   84 (93)
T cd00063          13 TSTSVTLSWTPPEDDGGPITGYVVEYREKG-SGDWKEVEVTPGS-------ETSYTLTGLKPGTEYEFRVRAVNGGGESP   84 (93)
T ss_pred             cCCEEEEEECCCCCCCCcceeEEEEEeeCC-CCCCEEeeccCCc-------ccEEEEccccCCCEEEEEEEEECCCccCC
Confidence            35789999998433  35678999988764 4567665443111       26789999999999999999999988887


Q ss_pred             CCcceEE
Q psy12131        232 PSKAYVF  238 (245)
Q Consensus       232 ~s~~~~~  238 (245)
                      ++....+
T Consensus        85 ~s~~~~~   91 (93)
T cd00063          85 PSESVTV   91 (93)
T ss_pred             Ccccccc
Confidence            7764444

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.06  E-value=9e-05  Score=50.29  Aligned_cols=83  Identities=17%  Similarity=0.316  Sum_probs=56.1

Q ss_pred             eEEecCCCeEEEEEEEe-ecCCCeEEEEECCEEec----------c--CCcEE-EEecCceeEEEEccCCCCCCeEEEEE
Q psy12131         58 WIHTAPDMRAEIICNVY-ANPPAKVEWFRDGTAIT----------L--GGRID-MHVSSEKHSLLVRHIKDTDFGNYMCQ  123 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~-~~~~~~~~w~~~~~~~~----------~--~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~  123 (245)
                      .+.+.+|+++.|.|... +...+.+.|.+....+.          .  .+++. .......+.++|.++..+|.|.|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            45678999999999985 55667999998532221          0  12333 22333457899999999999999999


Q ss_pred             EEe-CCc-eeEEEEEEEec
Q psy12131        124 ASN-NLG-SSQQFIQLSGI  140 (245)
Q Consensus       124 ~~n-~~g-~~~~~~~~~~~  140 (245)
                      ..- +.| ..+...-|.+.
T Consensus       104 F~tfp~G~~~~gt~CLtVt  122 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVT  122 (189)
T ss_pred             EEecCCCCCceeEEEEEEE
Confidence            775 345 44455555543

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.06  E-value=7.4e-05  Score=44.17  Aligned_cols=74  Identities=19%  Similarity=0.259  Sum_probs=50.6

Q ss_pred             EecCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12131         60 HTAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL  137 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~  137 (245)
                      .+..|++++|.|.....+.|  .+.|..-+......      ......+|.+..+...|.|.++|.+....-.....+.+
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~------~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V   83 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI------LNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI   83 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee------ccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence            46789999999999654454  99998643321110      01133478999999999999999998665444455555


Q ss_pred             Ee
Q psy12131        138 SG  139 (245)
Q Consensus       138 ~~  139 (245)
                      .+
T Consensus        84 ~V   85 (88)
T cd07694          84 KV   85 (88)
T ss_pred             EE
Confidence            44

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.05  E-value=0.00015  Score=45.79  Aligned_cols=67  Identities=13%  Similarity=0.360  Sum_probs=41.3

Q ss_pred             ecCCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcEEEEecCc-----eeEEEEccCCCCCCe-EEEEEEEeCC
Q psy12131         61 TAPDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRIDMHVSSE-----KHSLLVRHIKDTDFG-NYMCQASNNL  128 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g-~y~C~~~n~~  128 (245)
                      ...|+.++|.|.+.|.-+  ..+.|++|+..+.............     .+.|.+.. ...|.+ .|+|.+....
T Consensus        18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence            456888999999988544  4899999999876432221111111     22344443 333433 5999999864

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.05  E-value=6e-05  Score=44.95  Aligned_cols=62  Identities=16%  Similarity=0.341  Sum_probs=40.6

Q ss_pred             EEEEEEEee-cCCCeEEEEECCEEeccCCcEEEEecC-----ceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         67 AEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSS-----EKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        67 ~~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +.|.|.+.| .|...+.|++++..+............     ..+.|.+..-...+...|+|.+.+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence            679999977 566799999999987543322221111     12355565444556678999999864

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.05  E-value=1.5e-05  Score=49.07  Aligned_cols=36  Identities=33%  Similarity=0.535  Sum_probs=29.3

Q ss_pred             ceEEEecc-----CCCCCEEEEEEEEcC-CCCceeeEEEEEE
Q psy12131         11 ESLDLDRV-----TLKLAGLYQCIASNN-IGESTSKNFIVNV   46 (245)
Q Consensus        11 ~~L~i~~~-----~~~d~G~Y~C~~~~~-~~~~~~~~~~l~v   46 (245)
                      .+|.|.++     ..+|.|.|+|.|.|. .|...+..+.|.|
T Consensus        54 ~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          54 GSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV   95 (95)
T ss_pred             CeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence            34778777     689999999999999 8886677777764

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.04  E-value=7.1e-05  Score=44.14  Aligned_cols=72  Identities=11%  Similarity=-0.065  Sum_probs=45.3

Q ss_pred             CCeeEEEEEeCCCC-CceEEEEEEEeec---CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        155 PDGYRLVWQVDTYS-GIIQYLLKFRERE---ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       155 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      ++.+.|.|.+.+.+ |...   |+++..   ..... .+....        ....+.|.++...+.+.|.|.|.|..|..
T Consensus         1 G~~v~l~C~~~g~P~p~v~---W~~~~~~~~~~~~~-~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   68 (78)
T cd05743           1 GETVEFTCVATGVPTPIIN---WRLNWGHVPDSARV-SITSEG--------GYGTLTIRDVKESDQGAYTCEAINTRGMV   68 (78)
T ss_pred             CCEEEEEEEEEEecCCEEE---EEECCeECCCCCCE-EEEECC--------CEEEEEECCCChHHCEEEEEEEEecCCEE
Confidence            46789999996654 3222   334322   11111 111111        12578999999999999999999999987


Q ss_pred             CCCcceEE
Q psy12131        231 RPSKAYVF  238 (245)
Q Consensus       231 ~~s~~~~~  238 (245)
                      ...+.+.+
T Consensus        69 ~~~~~~~~   76 (78)
T cd05743          69 FGIPDGIL   76 (78)
T ss_pred             EecccEEE
Confidence            66555544

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.02  E-value=5.8e-05  Score=46.63  Aligned_cols=76  Identities=18%  Similarity=0.251  Sum_probs=48.0

Q ss_pred             CCeEEEEEEEeecCCC-eEEEEECCE----Eec-----c--------CCcEEE-EecCceeEEEEccCCCCCCeEEEEEE
Q psy12131         64 DMRAEIICNVYANPPA-KVEWFRDGT----AIT-----L--------GGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQA  124 (245)
Q Consensus        64 g~~~~l~C~~~~~~~~-~~~w~~~~~----~~~-----~--------~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~  124 (245)
                      |++++|.|........ .+.|++...    .+.     .        ..+..+ ........|.|.+++.+|.|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            6789999987544332 699987321    110     0        011111 11234578999999999999999998


Q ss_pred             Ee-CCceeEEEEEEEe
Q psy12131        125 SN-NLGSSQQFIQLSG  139 (245)
Q Consensus       125 ~n-~~g~~~~~~~~~~  139 (245)
                      .. +.|.....+.|.+
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            75 4566555555554

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.01  E-value=0.00014  Score=44.47  Aligned_cols=75  Identities=19%  Similarity=0.444  Sum_probs=48.9

Q ss_pred             CeEEEEEEEeecCC-CeEEEEECC----EEecc-------------CCcEEEE-ecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         65 MRAEIICNVYANPP-AKVEWFRDG----TAITL-------------GGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        65 ~~~~l~C~~~~~~~-~~~~w~~~~----~~~~~-------------~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      +++.|.|.....+. .++.|.+..    ..+..             ..+..+. ......+|.|.++..+|.|.|.|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            36789999864332 378897732    12210             1122221 12235689999999999999999976


Q ss_pred             e-CCceeEEEEEEEe
Q psy12131        126 N-NLGSSQQFIQLSG  139 (245)
Q Consensus       126 n-~~g~~~~~~~~~~  139 (245)
                      . +.|+...++.|.+
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence            5 6788888777765

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.01  E-value=2.2e-05  Score=48.24  Aligned_cols=40  Identities=18%  Similarity=0.299  Sum_probs=30.3

Q ss_pred             EEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12131          5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN   45 (245)
Q Consensus         5 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~   45 (245)
                      .++..+..|.|.++..+|+|.|+|.+.|...- ..-.+.|+
T Consensus        64 Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C-~~~~i~l~  103 (104)
T cd05896          64 RMSKEEDSIWFRPAELQDSGLYTCVLRNSTYC-MKVSMSLT  103 (104)
T ss_pred             eEEEeCCEEEEEeCChhhCeEEEEEECCCCcc-eEEEEEEE
Confidence            34445677999999999999999999987643 34455554

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.01  E-value=7.7e-06  Score=49.91  Aligned_cols=35  Identities=17%  Similarity=0.200  Sum_probs=27.6

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCC
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGE   36 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~   36 (245)
                      .|..+......|.|.+++++|+|.|+|.|.|....
T Consensus        51 ~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          51 GRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             CCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence            34445554566999999999999999999997543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.00  E-value=6.3e-05  Score=46.58  Aligned_cols=70  Identities=17%  Similarity=0.339  Sum_probs=48.6

Q ss_pred             EEecCCCeEEEEEEEee-cCCCeEEEEECCE-----Ee--------ccCCcEEEEe--cCceeEEEEccCCCCCCeEEEE
Q psy12131         59 IHTAPDMRAEIICNVYA-NPPAKVEWFRDGT-----AI--------TLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMC  122 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~-~~~~~~~w~~~~~-----~~--------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C  122 (245)
                      +.+.+|++++|.|.... .....+.|++...     .+        ....++.+..  ......|.|.+++.+|.|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            34678999999999865 3456789997431     11        1123444432  2345689999999999999999


Q ss_pred             EEEeCC
Q psy12131        123 QASNNL  128 (245)
Q Consensus       123 ~~~n~~  128 (245)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            988754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.98  E-value=0.00011  Score=47.22  Aligned_cols=72  Identities=15%  Similarity=0.321  Sum_probs=48.7

Q ss_pred             cceEEecCCCeEEEEEEEeecC------CCeEEEEECCE------Eec-----------cCCcEEEE--ecCceeEEEEc
Q psy12131         56 KQWIHTAPDMRAEIICNVYANP------PAKVEWFRDGT------AIT-----------LGGRIDMH--VSSEKHSLLVR  110 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~------~~~~~w~~~~~------~~~-----------~~~~~~~~--~~~~~~~l~i~  110 (245)
                      |..+.+..|+.++|.|......      ...+.|++...      .+.           ...++.+.  .......|.|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            4456788999999999875322      24689997321      110           01233332  13345789999


Q ss_pred             cCCCCCCeEEEEEEEeC
Q psy12131        111 HIKDTDFGNYMCQASNN  127 (245)
Q Consensus       111 ~~~~~d~g~y~C~~~n~  127 (245)
                      +++.+|.|.|.|.+...
T Consensus        86 ~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          86 DAQPEDSGKYFFRVELG  102 (119)
T ss_pred             cCChhhCeEEEEEEEcC
Confidence            99999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.97  E-value=7.4e-05  Score=46.79  Aligned_cols=66  Identities=18%  Similarity=0.412  Sum_probs=45.5

Q ss_pred             ecCCCeEEEEEEEeecCCCeEEEEECCE----E---ec---c------------CCcEEEEecCceeEEEEccCCCCCCe
Q psy12131         61 TAPDMRAEIICNVYANPPAKVEWFRDGT----A---IT---L------------GGRIDMHVSSEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~~~~~~~~w~~~~~----~---~~---~------------~~~~~~~~~~~~~~l~i~~~~~~d~g  118 (245)
                      +..|+.++|.|.........+.|++-..    .   +.   .            ..++..........|.|.+++.+|.|
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg   82 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG   82 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence            5689999999998655456799997221    1   10   0            11233323345668999999999999


Q ss_pred             EEEEEEEe
Q psy12131        119 NYMCQASN  126 (245)
Q Consensus       119 ~y~C~~~n  126 (245)
                      .|.|.+.+
T Consensus        83 tY~Ca~~~   90 (104)
T cd05720          83 YYFCSVAS   90 (104)
T ss_pred             EEEEEEcc
Confidence            99998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=97.95  E-value=1.5e-05  Score=47.96  Aligned_cols=34  Identities=26%  Similarity=0.386  Sum_probs=28.4

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV   44 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l   44 (245)
                      ++.|.|.+++.+|+|.|+|.|.|..|. ..+.+.|
T Consensus        51 ~~~L~I~~v~~~DsG~Y~C~a~n~~g~-~~~~~~l   84 (85)
T cd05754          51 NGILTIRNVQLSDAGTYVCTGSNMLDT-DEATATL   84 (85)
T ss_pred             CCEEEECCCCHHHCEEEEEEEeccCCe-EeEEEEE
Confidence            457999999999999999999999887 4555543

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>smart00409 IG Immunoglobulin

Probab=97.95  E-value=6e-05  Score=44.91  Aligned_cols=44  Identities=25%  Similarity=0.404  Sum_probs=33.5

Q ss_pred             cceEEEeec--ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLYNR--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +++.+....  ..|.|.+++.+|+|.|+|.+.+..+. ....+.|.|
T Consensus        40 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~-~~~~~~l~V   85 (86)
T smart00409       40 GRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGS-ASSTTTLTV   85 (86)
T ss_pred             CcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCe-EEEEEEEEE
Confidence            345555544  67999999999999999999987766 444466665

>smart00410 IG_like Immunoglobulin like

Probab=97.95  E-value=6e-05  Score=44.91  Aligned_cols=44  Identities=25%  Similarity=0.404  Sum_probs=33.5

Q ss_pred             cceEEEeec--ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLYNR--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +++.+....  ..|.|.+++.+|+|.|+|.+.+..+. ....+.|.|
T Consensus        40 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~-~~~~~~l~V   85 (86)
T smart00410       40 GRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGS-ASSTTTLTV   85 (86)
T ss_pred             CcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCe-EEEEEEEEE
Confidence            345555544  67999999999999999999987766 444466665

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.95  E-value=2.5e-05  Score=49.86  Aligned_cols=38  Identities=16%  Similarity=0.172  Sum_probs=28.9

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCC-ceeeEEEEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNV   46 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v   46 (245)
                      +..+|.|.+++.+|+|.|+|.+.+..+. .....+.|.|
T Consensus        77 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~  115 (115)
T cd05880          77 RDASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLRV  115 (115)
T ss_pred             CceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEeC
Confidence            4567999999999999999999986553 2345565543

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=97.94  E-value=2.8e-05  Score=44.63  Aligned_cols=32  Identities=25%  Similarity=0.456  Sum_probs=25.7

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV   44 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l   44 (245)
                      ...|.|.+++  |+|.|+|.|.|..|. ..+++.|
T Consensus        37 ~~~L~i~~~~--d~G~Y~C~A~N~~G~-~~~~a~l   68 (69)
T cd05739          37 RNVLELTNIY--ESANYTCVAISSLGM-IEATAQV   68 (69)
T ss_pred             ccEEEEeccc--cCeeEEEEEEeCCCE-EEEEEEE
Confidence            4569999974  899999999999987 5666554

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.93  E-value=0.00024  Score=43.50  Aligned_cols=74  Identities=26%  Similarity=0.426  Sum_probs=42.0

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcE-EEEec-Cc----eeEEEEccCCCCCCeEE
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRI-DMHVS-SE----KHSLLVRHIKDTDFGNY  120 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~-~~~~~-~~----~~~l~i~~~~~~d~g~y  120 (245)
                      +|.+...+...   .++.+.|.|.+.|..++  .+.|++++......... ..... +.    .+.|.+   ...+...|
T Consensus         2 pP~v~v~~~~~---~~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v---~~~~~~~y   75 (93)
T cd07698           2 PPEVRVTRKRA---PDGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEV---PPEDKARY   75 (93)
T ss_pred             CCEEEEEecCC---CCCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEE---CCCCCCEE
Confidence            45554443322   16789999999996443  89999998633222111 11111 11    122333   33467899


Q ss_pred             EEEEEeCC
Q psy12131        121 MCQASNNL  128 (245)
Q Consensus       121 ~C~~~n~~  128 (245)
                      +|.+.+..
T Consensus        76 tC~V~H~~   83 (93)
T cd07698          76 SCRVEHSG   83 (93)
T ss_pred             EEEEEeCC
Confidence            99988754

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.93  E-value=4.4e-05  Score=46.64  Aligned_cols=34  Identities=24%  Similarity=0.391  Sum_probs=26.7

Q ss_pred             CcceEEEe---ecceEEEeccCCCCCEEEEEEEEcCC
Q psy12131          1 EKEIELLY---NRESLDLDRVTLKLAGLYQCIASNNI   34 (245)
Q Consensus         1 ~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~   34 (245)
                      |.|+++..   ...+|+|.+++.+|+|.|+|.+....
T Consensus        49 d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~p   85 (95)
T cd05881          49 DSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTDP   85 (95)
T ss_pred             CcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEccc
Confidence            45777665   23459999999999999999998643

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd00096 Ig Immunoglobulin domain

Probab=97.93  E-value=9.8e-05  Score=42.05  Aligned_cols=62  Identities=24%  Similarity=0.500  Sum_probs=44.6

Q ss_pred             EEEEEEEeecCCCeEEEEECCEEeccCCcE----EEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAITLGGRI----DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +.|.|.+.+.+...+.|++.+.........    ..........+.+..+...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            368899988677799999987665433211    11112235678999999999999999998865

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.92  E-value=3.3e-05  Score=49.45  Aligned_cols=44  Identities=14%  Similarity=0.222  Sum_probs=31.2

Q ss_pred             cceEEEe----ecceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEE
Q psy12131          2 KEIELLY----NRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVN   45 (245)
Q Consensus         2 ~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~   45 (245)
                      +|+.+..    +..+|+|.+++.+|+|.|.|.+.+..... ....+.|.
T Consensus        67 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  115 (116)
T cd05715          67 DRVEWVGNPSRKDASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR  115 (116)
T ss_pred             CcEEEecCCcCCeeEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence            4566543    24679999999999999999999765431 23455554

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=97.91  E-value=2e-05  Score=46.46  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=27.3

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ..+..|.|.++ .+|+|.|+|.|.+.  . .+..+.|.|
T Consensus        44 ~~~~~l~i~~~-~~dsG~Y~C~a~~~--~-~S~~v~l~V   78 (78)
T cd05752          44 TTTNSYRIRAA-NNDSGEYRCQTQGS--S-LSDPVHLEV   78 (78)
T ss_pred             ccCCeEEEeec-ccCCEEeEEECCCC--c-CCCCEEEeC
Confidence            45567999999 99999999999875  2 466666654

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.91  E-value=9.7e-05  Score=46.54  Aligned_cols=67  Identities=16%  Similarity=0.371  Sum_probs=45.4

Q ss_pred             EecCCCeEEEEEEEeec-CCCeEEEEECCEE---------e--c-----------cCCcEEEE--ecCceeEEEEccCCC
Q psy12131         60 HTAPDMRAEIICNVYAN-PPAKVEWFRDGTA---------I--T-----------LGGRIDMH--VSSEKHSLLVRHIKD  114 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~-~~~~~~w~~~~~~---------~--~-----------~~~~~~~~--~~~~~~~l~i~~~~~  114 (245)
                      .+.+|+.++|.|...+. ....+.|++-...         +  .           ...++.+.  .......|.|.++..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            46789999999998754 3457999972210         0  0           01234332  223346799999999


Q ss_pred             CCCeEEEEEEEe
Q psy12131        115 TDFGNYMCQASN  126 (245)
Q Consensus       115 ~d~g~y~C~~~n  126 (245)
                      +|.|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999763

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.91  E-value=3.2e-05  Score=47.80  Aligned_cols=38  Identities=32%  Similarity=0.406  Sum_probs=30.8

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +.++|+|.+++.+|+|.|+|.+........+..+.|+|
T Consensus        59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          59 NSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             CccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence            45679999999999999999988654333677788876

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>PHA02633 hypothetical protein; Provisional

Probab=97.90  E-value=5.3e-05  Score=41.16  Aligned_cols=41  Identities=20%  Similarity=0.246  Sum_probs=31.4

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCC
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   50 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p   50 (245)
                      ++..|.|-++..+|+|.|.|...|..-. ..-++.|+|...+
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c-~~~si~l~V~~~~   56 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYS-DMMKFDLCICLRI   56 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCee-EEEEEEEEEeecc
Confidence            5566999999999999999999975433 4556777776443

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=97.90  E-value=3.2e-05  Score=46.36  Aligned_cols=35  Identities=31%  Similarity=0.519  Sum_probs=29.8

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ..|.|.+++.+|+|.|+|.+.|..|. ..+++.|.|
T Consensus        51 ~~l~i~~~~~~d~g~Y~C~~~n~~g~-~~~~~~l~v   85 (85)
T cd05729          51 WTLILESVVPSDSGKYTCIVENKYGS-INHTYKVDV   85 (85)
T ss_pred             EEEEEeECCcccCEEEEEEEEECCce-EEEEEEEeC
Confidence            46999999999999999999999887 577776653

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.88  E-value=0.00041  Score=42.23  Aligned_cols=65  Identities=15%  Similarity=0.302  Sum_probs=39.6

Q ss_pred             cCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEE-EEecCceeEEEE---ccCCCCCCeEEEEEEEeCC
Q psy12131         62 APDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRID-MHVSSEKHSLLV---RHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        62 ~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~-~~~~~~~~~l~i---~~~~~~d~g~y~C~~~n~~  128 (245)
                      ..|....|.|.+.|.-++  .+.|+++|..+. +.... ...++ ..++++   -.+.+.+...|.|.+....
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~-d~tyq~~s~l~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSK-DWTFYLLKSTEFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECC-CCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence            346667899999996444  789999999876 32211 11111 112221   1234556778999988753

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=97.84  E-value=6.8e-05  Score=46.49  Aligned_cols=29  Identities=34%  Similarity=0.599  Sum_probs=24.8

Q ss_pred             cCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         18 VTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        18 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus        71 ~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          71 KGRSDEGVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             CCcCcCEEEEEEEEccccceecceEEEEe
Confidence            36899999999999999986677777776

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.82  E-value=5.1e-05  Score=48.27  Aligned_cols=45  Identities=20%  Similarity=0.228  Sum_probs=32.5

Q ss_pred             cceEEEeecc----eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLYNRE----SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +|+.+..+..    +|.|.+++.+|+|.|.|.+...........+.|.|
T Consensus        66 ~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   66 GRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             TTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             eeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            4666665544    79999999999999999999873332444555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>smart00060 FN3 Fibronectin type 3 domain

Probab=97.79  E-value=0.00054  Score=40.06  Aligned_cols=67  Identities=28%  Similarity=0.506  Sum_probs=45.6

Q ss_pred             CCeeEEEEEeCCCCCceEEEEEEEeecCC--CCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        155 PDGYRLVWQVDTYSGIIQYLLKFREREEL--TPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      ..++.|+|.+........|.+.|......  ..|........        ...+.+.+|.++..|.++|.|.+..|.
T Consensus        14 ~~~~~v~W~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~L~~~~~Y~v~v~a~~~~g~   82 (83)
T smart00060       14 STSVTLSWEPPPDDGITGYIVGYRVEYREEGSSWKEVNVTPS--------STSYTLTGLKPGTEYEFRVRAVNGAGE   82 (83)
T ss_pred             CCEEEEEECCCCCCCCCccEEEEEEEEecCCCccEEEEecCC--------ccEEEEeCcCCCCEEEEEEEEEcccCC
Confidence            44899999964322215677777665411  23554443332        267899999999999999999998664

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.78  E-value=0.01  Score=46.17  Aligned_cols=78  Identities=19%  Similarity=0.347  Sum_probs=58.9

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCC---eEEEEECC
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA---KVEWFRDG   87 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~~w~~~~   87 (245)
                      .|.|..++..++|.|+=+..+..+.. ....+.+....+|.+...+..  +.+|+...-.|.+..+-++   .+.|++++
T Consensus       199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg  276 (486)
T PHA03273        199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP--SLKGENYRAVCVVASYFPHSSVKLRWYKNA  276 (486)
T ss_pred             ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            49999999999999986655543431 345555555778887766543  5689999999999765444   79999999


Q ss_pred             EEec
Q psy12131         88 TAIT   91 (245)
Q Consensus        88 ~~~~   91 (245)
                      .++.
T Consensus       277 ~~V~  280 (486)
T PHA03273        277 KEVD  280 (486)
T ss_pred             eecc
Confidence            9887

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=97.78  E-value=5.8e-05  Score=42.05  Aligned_cols=30  Identities=33%  Similarity=0.610  Sum_probs=25.0

Q ss_pred             EEeecceEEEeccCCCCCEEEEEEEEcCCC
Q psy12131          6 LLYNRESLDLDRVTLKLAGLYQCIASNNIG   35 (245)
Q Consensus         6 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~   35 (245)
                      .......|.|.+++..|+|.|+|.+.+..|
T Consensus        34 ~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408       34 LSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             EecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            334556799999999999999999998654

>KOG4367|consensus

Probab=97.77  E-value=4.4e-05  Score=58.04  Aligned_cols=92  Identities=23%  Similarity=0.346  Sum_probs=73.1

Q ss_pred             CCCCccccCccccCCCeeEEEEEeC--CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEE
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQVD--TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE  218 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  218 (245)
                      |..|++....--....+++|.|..+  ...|+-+|.++..+.. ++++..+.....         +-+++.+|.-.+.|.
T Consensus       438 patpilq~~ec~t~nns~t~~wkqp~~~~~~~dg~~leld~g~-~g~frevy~g~e---------tmctvdglhfns~y~  507 (699)
T KOG4367|consen  438 PATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGN-GGQFREVYVGKE---------TMCTVDGLHFNSTYN  507 (699)
T ss_pred             CCCceeehhhhhccCCceEEEeecCCCCCCCCcceEEEeecCC-CCceeEEEecCc---------eeEEecceecchhHH
Confidence            3344444444445678999999953  3357889999988874 888988887655         679999999999999


Q ss_pred             EEEEEEecCCCCCCCcceEEecCC
Q psy12131        219 ASVLAKNRFGWSRPSKAYVFATEG  242 (245)
Q Consensus       219 ~~v~a~N~~G~~~~s~~~~~~t~~  242 (245)
                      .||.|.|..|.+++|..+..+|..
T Consensus       508 arvka~n~tg~s~ys~tl~lqts~  531 (699)
T KOG4367|consen  508 ARVKAFNKTGVSPYSKTLVLQTSE  531 (699)
T ss_pred             HHHHHhhccCCCcccceeEeeecc
Confidence            999999999999999988887764

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.77  E-value=0.00051  Score=41.83  Aligned_cols=77  Identities=16%  Similarity=0.113  Sum_probs=50.1

Q ss_pred             cccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEec-CCC
Q psy12131        151 RRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNR-FGW  229 (245)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~-~G~  229 (245)
                      .+..|+.|+|+|..+.  +...|. ++++.. ...+... ..       ......|.|..+.+.+.+.|+|++.|. .+.
T Consensus        12 vV~~G~~VtL~C~~~~--~~~~f~-l~k~g~-~~~~~~~-~~-------~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~   79 (91)
T cd05751          12 VVPLGKPVTLRCQGPY--GAVEYR-LYREGS-TFAVKKP-PE-------PQNKAKFFIPSMKREHAGRYRCYYRSGVALW   79 (91)
T ss_pred             ccCCCCcEEEEEecCC--CCCEEE-EEECCC-Ccccccc-CC-------CceeEEEEccCCChhHCEEEEEEEECCCCcc
Confidence            3578999999998753  333443 455533 1112111 00       112367899999999999999999998 677


Q ss_pred             CCCCcceEEe
Q psy12131        230 SRPSKAYVFA  239 (245)
Q Consensus       230 ~~~s~~~~~~  239 (245)
                      +..|+.+.+.
T Consensus        80 S~~Sd~lel~   89 (91)
T cd05751          80 SEPSDPLELV   89 (91)
T ss_pred             CCCCCcEEEE
Confidence            8888877653

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=97.75  E-value=6.3e-05  Score=45.85  Aligned_cols=30  Identities=40%  Similarity=0.526  Sum_probs=24.7

Q ss_pred             cceEEEeccCC-CCCEEEEEEEEcCCCCcee
Q psy12131         10 RESLDLDRVTL-KLAGLYQCIASNNIGESTS   39 (245)
Q Consensus        10 ~~~L~i~~~~~-~d~G~Y~C~~~~~~~~~~~   39 (245)
                      ...|.|.++.. +|+|.|+|.|.|..|...+
T Consensus        57 ~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          57 GGNLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             CCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            34699998875 8999999999999987433

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.75  E-value=2.4e-05  Score=47.68  Aligned_cols=34  Identities=18%  Similarity=0.096  Sum_probs=28.8

Q ss_pred             CcceEEEeecceEEEeccCCCCCE-EEEEEEEcCCC
Q psy12131          1 EKEIELLYNRESLDLDRVTLKLAG-LYQCIASNNIG   35 (245)
Q Consensus         1 ~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~   35 (245)
                      ++|+.+..+ ..|.|.+++.+|+| .|.|.|.+...
T Consensus        49 ~~Ri~~~~~-GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          49 DERVSMGQN-GNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             cccEEECCC-ceEEEEEEehhhCCCCeEEEEEcccc
Confidence            468888766 45999999999999 89999998753

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=97.74  E-value=6.2e-05  Score=45.18  Aligned_cols=30  Identities=23%  Similarity=0.308  Sum_probs=24.0

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCC
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNI   34 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   34 (245)
                      |+.+.+  ..|.|.+++.+|+|.|+|.+.+..
T Consensus        42 r~~~~~--~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873          42 KYLLYR--DGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             eEEEEC--CcEEEeCCCHHHCEEEEEEEEecc
Confidence            444432  349999999999999999999763

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.73  E-value=0.00037  Score=44.64  Aligned_cols=71  Identities=18%  Similarity=0.318  Sum_probs=47.4

Q ss_pred             cceEEecCCCeEEEEEEEeecC--CCeEEEEEC--C-EE--e---c-----------cCCcEEEEecC--ceeEEEEccC
Q psy12131         56 KQWIHTAPDMRAEIICNVYANP--PAKVEWFRD--G-TA--I---T-----------LGGRIDMHVSS--EKHSLLVRHI  112 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~--~-~~--~---~-----------~~~~~~~~~~~--~~~~l~i~~~  112 (245)
                      |....+.+|+.++|.|...+..  ...+.|++-  + .+  +   .           ...++......  ....|.|.++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            4456688999999999976433  456899871  1 11  1   0           01234333222  3357999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12131        113 KDTDFGNYMCQASN  126 (245)
Q Consensus       113 ~~~d~g~y~C~~~n  126 (245)
                      ..+|.|.|.|.+..
T Consensus        84 ~~~Dsa~YyCa~~~   97 (117)
T cd04981          84 TPEDTAVYYCARGL   97 (117)
T ss_pred             CHHHCEEEEEEEEc
Confidence            99999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.71  E-value=0.00085  Score=40.99  Aligned_cols=63  Identities=19%  Similarity=0.192  Sum_probs=36.8

Q ss_pred             CCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcEE-EEec-Cc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         63 PDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRID-MHVS-SE----KHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~~-~~~~-~~----~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      .+...+|.|.+.|.-+  ..+.|.++|..+..+.... ...+ +.    .+.|.+.   +.+...|+|.+....
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~   84 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG   84 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence            4566799999999544  3789999998875432111 1111 11    1233333   234557888877653

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.66  E-value=0.0014  Score=40.13  Aligned_cols=36  Identities=28%  Similarity=0.450  Sum_probs=29.5

Q ss_pred             ceeEEEEccCCCCCCeEEEEEEEe-CCceeEEEEEEE
Q psy12131        103 EKHSLLVRHIKDTDFGNYMCQASN-NLGSSQQFIQLS  138 (245)
Q Consensus       103 ~~~~l~i~~~~~~d~g~y~C~~~n-~~g~~~~~~~~~  138 (245)
                      ...++.|.++..+|.|.|.|.+.. +.|...+.+.+.
T Consensus        58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~~   94 (96)
T cd05889          58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEVV   94 (96)
T ss_pred             CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEEE
Confidence            357899999999999999999876 467777776654

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.66  E-value=0.015  Score=44.63  Aligned_cols=79  Identities=20%  Similarity=0.270  Sum_probs=54.5

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEe-cCCeEEeecceEEecCCCeEEEEEEEeecCCC---eEEEEEC
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVI-YPPEVSVEKQWIHTAPDMRAEIICNVYANPPA---KVEWFRD   86 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~-~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~~w~~~   86 (245)
                      .|.|.++...|+|.|+....+..... ..+.+.+.+. -+|.+...+..  +..|+...-.|.+..+-+|   .+.|+++
T Consensus       208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~P--VL~Ge~YkAtC~vAnYYPP~SvrlrWf~n  285 (490)
T PHA03271        208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPP--VLSGENYKASCIVRHFYPPGSVYVSWRQN  285 (490)
T ss_pred             eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            49999999999997766655543332 2233334443 46666665433  5689999999999776444   7999999


Q ss_pred             CEEecc
Q psy12131         87 GTAITL   92 (245)
Q Consensus        87 ~~~~~~   92 (245)
                      |..+..
T Consensus       286 G~~V~~  291 (490)
T PHA03271        286 GNIATP  291 (490)
T ss_pred             CccccC
Confidence            987654

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=97.63  E-value=3.2e-05  Score=47.22  Aligned_cols=27  Identities=15%  Similarity=0.256  Sum_probs=23.5

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCC
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGE   36 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~   36 (245)
                      ..+|+|.+++.+|+|.|+|.+.|..+.
T Consensus        64 ~~~L~I~~l~~sDsgtY~C~v~~~~~~   90 (94)
T cd07690          64 SFPLIIKNLKIEDSDTYICEVEDKKEE   90 (94)
T ss_pred             eEEEEECCCCHHHCEEEEEEECCccce
Confidence            356999999999999999999987654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.63  E-value=0.00023  Score=42.49  Aligned_cols=43  Identities=14%  Similarity=0.224  Sum_probs=28.8

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      |+.....  .|.|.+++.+|+|.|+|.+.-..-....+.+.|.|.
T Consensus        41 r~~~~~~--GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~v~   83 (85)
T cd05872          41 SYRVGTD--GLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNVV   83 (85)
T ss_pred             ceEEeCC--CCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEEEe
Confidence            4444433  388999999999999999984322224556666553

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=97.63  E-value=0.00018  Score=42.44  Aligned_cols=36  Identities=36%  Similarity=0.460  Sum_probs=29.4

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ..|.|.+++.+|+|.|+|.+.+..+...+..+.|+|
T Consensus        45 ~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   45 NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            338889999999999999999976655677777765

...

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.62  E-value=0.0011  Score=38.66  Aligned_cols=62  Identities=27%  Similarity=0.437  Sum_probs=38.4

Q ss_pred             EEEEEEEeec-CC-CeEEEEECCEEeccCCcE-EEEec-Cc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         67 AEIICNVYAN-PP-AKVEWFRDGTAITLGGRI-DMHVS-SE----KHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        67 ~~l~C~~~~~-~~-~~~~w~~~~~~~~~~~~~-~~~~~-~~----~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +.|.|.+.|. |. ..+.|++++..+..+... ..... +.    .+.|.+......+...|+|.+....
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            5799999986 33 489999999874432111 11111 11    2345555545566779999998753

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.62  E-value=0.02  Score=44.97  Aligned_cols=80  Identities=16%  Similarity=0.133  Sum_probs=60.3

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCC-CC-ceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCC---eEEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNI-GE-STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA---KVEWFR   85 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~-~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~~w~~   85 (245)
                      -.|.|.+++..++|.|+=+..+.. +. .....+.+.+..+|.+...+..  +.+|+...-.|.+..+-++   .+.|++
T Consensus       289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~P--VL~Ge~YkAtC~vA~YYPp~SvrlrWf~  366 (566)
T PHA03269        289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDP--VLLGNPYAAYCKVNKYYPPHSVIVKWTS  366 (566)
T ss_pred             cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEEe
Confidence            349999999999999986655432 22 2456777777788877666543  5689999999999765444   799999


Q ss_pred             CCEEecc
Q psy12131         86 DGTAITL   92 (245)
Q Consensus        86 ~~~~~~~   92 (245)
                      |+.++..
T Consensus       367 ng~~V~~  373 (566)
T PHA03269        367 NFGNIGK  373 (566)
T ss_pred             CCcccCc
Confidence            9888774

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.59  E-value=0.00044  Score=42.90  Aligned_cols=68  Identities=19%  Similarity=0.335  Sum_probs=40.6

Q ss_pred             ecCCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcE-E-EEecCc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         61 TAPDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRI-D-MHVSSE----KHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~-~-~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ...++.++|.|.+.|..+  ..+.|++++..+..+... . ....+.    .+.|.+..-...+...|+|.+....
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            335778999999988543  489999999887533111 0 111111    1234343333334568999988754

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.56  E-value=0.0038  Score=38.18  Aligned_cols=64  Identities=19%  Similarity=0.374  Sum_probs=38.6

Q ss_pred             cCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCc-EEEEecCc-----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         62 APDMRAEIICNVYANPPA--KVEWFRDGTAITLGGR-IDMHVSSE-----KHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        62 ~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~-~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ..++.+.|.|.+.|..++  .+.|++++..+..+.. .....+++     .+.|.+   ...+...|.|.+....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~   83 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSS   83 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCC
Confidence            357889999999985443  7899999988765411 11111111     122322   2335557888887754

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=97.55  E-value=0.00017  Score=42.82  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=25.8

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV   44 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l   44 (245)
                      .+.|.|.++  .|+|.|.|.|.|..|...+..+.|
T Consensus        48 ~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~   80 (81)
T cd05749          48 PSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV   80 (81)
T ss_pred             CCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence            456999887  588999999999999755555544

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>smart00406 IGv Immunoglobulin V-Type

Probab=97.52  E-value=0.00077  Score=39.82  Aligned_cols=58  Identities=21%  Similarity=0.451  Sum_probs=37.2

Q ss_pred             EEEEEEEeecCCC--eEEEEECCE-----Eec-------------cCCcEEEEec--CceeEEEEccCCCCCCeEEEEEE
Q psy12131         67 AEIICNVYANPPA--KVEWFRDGT-----AIT-------------LGGRIDMHVS--SEKHSLLVRHIKDTDFGNYMCQA  124 (245)
Q Consensus        67 ~~l~C~~~~~~~~--~~~w~~~~~-----~~~-------------~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~  124 (245)
                      +.|.|.......+  .+.|++...     .+.             ...++.+...  .....|.|.+++.+|.|.|.|.+
T Consensus         2 v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406        2 VTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             EEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence            6788887655443  678876321     010             1123333332  45678999999999999999963

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.47  E-value=0.0002  Score=45.28  Aligned_cols=33  Identities=18%  Similarity=0.263  Sum_probs=26.5

Q ss_pred             cceEEEe----ecceEEEeccCCCCCEEEEEEEEcCC
Q psy12131          2 KEIELLY----NRESLDLDRVTLKLAGLYQCIASNNI   34 (245)
Q Consensus         2 ~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~~   34 (245)
                      +|+++..    +..+|+|.+++.+|+|.|.|.+.+..
T Consensus        57 ~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~   93 (109)
T cd04983          57 GRFSATLDKSRKSSSLHISAAQLSDSAVYFCALSESG   93 (109)
T ss_pred             CcEEEEEcccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            4665553    45679999999999999999999754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=97.47  E-value=0.00074  Score=41.46  Aligned_cols=88  Identities=10%  Similarity=0.019  Sum_probs=57.6

Q ss_pred             cccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        151 RRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      .+..+..+.|.|..+.+|++.++.+.+-.......+... . .........+...+.+..|.....+.|.+.|.|+.+..
T Consensus        14 ~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~-~-~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          14 FVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHY-V-KSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             EEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccce-e-EEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            356788999999998888876565443322212222221 1 11111334567888999998888888888899999888


Q ss_pred             CCCcceEEec
Q psy12131        231 RPSKAYVFAT  240 (245)
Q Consensus       231 ~~s~~~~~~t  240 (245)
                      ..+-.+.++|
T Consensus        92 s~tF~l~v~~  101 (101)
T cd05860          92 SVTFNVYVNT  101 (101)
T ss_pred             EEEEEEEEeC
Confidence            7776666654

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.40  E-value=0.0024  Score=39.07  Aligned_cols=68  Identities=19%  Similarity=0.322  Sum_probs=40.5

Q ss_pred             CCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcE--EEEecCc----eeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         63 PDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRI--DMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~--~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      ....+.|.|.+.|.-+  ..+.|++++..+......  .....+.    .+.|.+..-...+...|.|.+......
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            4566899999998544  378999999876332111  1111111    123444433333557899999986543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=97.39  E-value=0.00063  Score=41.62  Aligned_cols=46  Identities=24%  Similarity=0.330  Sum_probs=37.0

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      +|+.+...+-.|.|..+++.|+|.|.-++.+..|..-.+.+.+.|.
T Consensus        62 ~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   62 NRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             HHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             ceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            4778888888899999999999999999999999866666666553

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.34  E-value=0.00035  Score=40.52  Aligned_cols=26  Identities=38%  Similarity=0.552  Sum_probs=22.4

Q ss_pred             EeecceEEEeccCCCCCEEEEEEEEc
Q psy12131          7 LYNRESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus         7 ~~~~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ....+.|.|.++..+|.|.|+|.|.|
T Consensus        50 ~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   50 SSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             cceeeEEEEccCCHHhCcEEEEEEEC
Confidence            34456799999999999999999986

...

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=97.33  E-value=0.0002  Score=40.31  Aligned_cols=18  Identities=33%  Similarity=0.691  Sum_probs=17.4

Q ss_pred             EEEeccCCCCCEEEEEEE
Q psy12131         13 LDLDRVTLKLAGLYQCIA   30 (245)
Q Consensus        13 L~i~~~~~~d~G~Y~C~~   30 (245)
                      |.|.+++.+|+|.|+|.|
T Consensus        47 L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen   47 LTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             EEESSCTGGGTEEEEEEE
T ss_pred             EEEccCCHHHCEEEEEEC
Confidence            999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.29  E-value=0.0018  Score=40.32  Aligned_cols=67  Identities=16%  Similarity=0.267  Sum_probs=39.2

Q ss_pred             cCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEEE--Eec---Cc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         62 APDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDM--HVS---SE----KHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        62 ~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~--~~~---~~----~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ..+..++|.|.+.|..+.  .+.|++++..+........  ...   +.    .+.|.+..-...+...|.|.+....
T Consensus        14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence            356789999999986554  6899999987654321111  100   01    1234443222234457999888754

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.27  E-value=0.00046  Score=43.22  Aligned_cols=34  Identities=15%  Similarity=0.174  Sum_probs=26.6

Q ss_pred             cceEEEe----ecceEEEeccCCCCCEEEEEEEEcCCC
Q psy12131          2 KEIELLY----NRESLDLDRVTLKLAGLYQCIASNNIG   35 (245)
Q Consensus         2 ~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~~~   35 (245)
                      +|+.+..    +..+|+|.+++.+|+|.|.|.+.+..+
T Consensus        54 ~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          54 GRFSGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             CcEEEEEeccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence            4555543    335799999999999999999997654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.24  E-value=0.06  Score=41.75  Aligned_cols=79  Identities=16%  Similarity=0.230  Sum_probs=61.7

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCC---eEEEEECC
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA---KVEWFRDG   87 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~~w~~~~   87 (245)
                      .|.|..++...+|.|+=...+..+.. ..+.+.+....+|.+...+..  +..|+...-.|.+..+-++   .+.|++|+
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P--vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng  260 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA--VLEGEPFGATCVAANYYPGDRAAFRWFEGG  260 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            39999999999999999877655432 455677777788887766543  5689999999999765444   79999999


Q ss_pred             EEecc
Q psy12131         88 TAITL   92 (245)
Q Consensus        88 ~~~~~   92 (245)
                      .++..
T Consensus       261 ~~V~~  265 (466)
T PHA03270        261 DEVFA  265 (466)
T ss_pred             ccccC
Confidence            88753

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.22  E-value=0.0063  Score=37.29  Aligned_cols=66  Identities=11%  Similarity=0.148  Sum_probs=38.1

Q ss_pred             CCeEEEEEEE-eecCCCeEEEEECCEEeccCCcEEEEecCc---eeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         64 DMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        64 g~~~~l~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      .....+.|.+ .|.|.+.|.|+++..... ........++.   .+.|.+......+...|+|.+.+..-.
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~   84 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQ   84 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccC
Confidence            3456778998 578889999998621100 00000111111   345666555555556899999987643

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.18  E-value=0.0094  Score=35.49  Aligned_cols=64  Identities=22%  Similarity=0.300  Sum_probs=41.6

Q ss_pred             CCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEEE-E-ecCc----eeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         63 PDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDM-H-VSSE----KHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~-~-~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      .+..+.|.|.+.+..+.  .+.|++++..+........ . ..++    .+.|.+.   ..+...|.|.+.....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            48899999999885443  7999999988765432221 1 1121    2344454   4455689999987653

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.18  E-value=0.0067  Score=38.57  Aligned_cols=73  Identities=15%  Similarity=0.208  Sum_probs=43.6

Q ss_pred             CCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcE--EEEecC-c----eeEEEEccCCCCC-CeEEEEEEEeCCceeE
Q psy12131         63 PDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRI--DMHVSS-E----KHSLLVRHIKDTD-FGNYMCQASNNLGSSQ  132 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~--~~~~~~-~----~~~l~i~~~~~~d-~g~y~C~~~n~~g~~~  132 (245)
                      .+..+.|.|.+.+.-+.  .+.|++++..+..+...  .....+ .    .+.|.+..-...+ ...|.|.+........
T Consensus        17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~   96 (115)
T cd05769          17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDT   96 (115)
T ss_pred             cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccc
Confidence            56778999999985443  78999999877643211  111111 1    2344444333223 4689999998755444


Q ss_pred             EEE
Q psy12131        133 QFI  135 (245)
Q Consensus       133 ~~~  135 (245)
                      ...
T Consensus        97 ~~~   99 (115)
T cd05769          97 DKW   99 (115)
T ss_pred             eee
Confidence            433

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.17  E-value=0.00036  Score=41.27  Aligned_cols=29  Identities=21%  Similarity=0.411  Sum_probs=22.8

Q ss_pred             cceEEEe----ecceEEEeccCCCCCEEEEEEE
Q psy12131          2 KEIELLY----NRESLDLDRVTLKLAGLYQCIA   30 (245)
Q Consensus         2 ~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~   30 (245)
                      +|+.+..    +..+|.|.+++.+|+|.|.|.+
T Consensus        49 ~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       49 GRVTISKDTSKNDVSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             CcEEEEecCcCCEEEEEEcCCCHHHCEEEEEcC
Confidence            4666553    3366999999999999999963

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.16  E-value=0.0013  Score=36.50  Aligned_cols=52  Identities=15%  Similarity=0.357  Sum_probs=35.6

Q ss_pred             cCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         62 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        62 ~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      ..|..|+|+|.....   .+.|.+++..+....          ..+.+.+.. ++.|.|.|.+.+.
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~----------~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSD----------EKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCCC----------ceEEeeccC-CCCceEEEEeCCC
Confidence            468999999986522   399999885544321          134444455 7899999999753

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.15  E-value=0.0045  Score=37.88  Aligned_cols=73  Identities=10%  Similarity=0.135  Sum_probs=41.4

Q ss_pred             CCeEEEEEEEe-ecCCCeEEEEECCEEeccCCcEEEEecCc---eeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12131         64 DMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL  137 (245)
Q Consensus        64 g~~~~l~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~  137 (245)
                      ...+.+.|.+. |.|.+.|.|+++..... ........++.   .+.|.+......+...|.|.+.+..-.....+.+
T Consensus        15 ~~~~va~C~s~~gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~   91 (95)
T cd07703          15 IPVPVAKCVSANGRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV   91 (95)
T ss_pred             CccEEEEEEcCCCCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence            34567899875 67888999998721110 00111111111   2456665545555668999999976444444433

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.14  E-value=0.0013  Score=44.88  Aligned_cols=41  Identities=24%  Similarity=0.335  Sum_probs=33.2

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcC-CCCceeeEEEEEEecC
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNN-IGESTSKNFIVNVIYP   49 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~~~l~v~~~   49 (245)
                      ..+.|+|.+++.+|+|.|+|.+..- .|...+++.-|.|...
T Consensus        83 ~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987         83 NESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             CcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEch
Confidence            4567999999999999999999854 3524788888998754

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.14  E-value=0.006  Score=37.46  Aligned_cols=68  Identities=13%  Similarity=0.135  Sum_probs=37.3

Q ss_pred             ecCCCeEEEEEEEeec-CCC--eEEEEECCEEe-ccCCcEEEEecCc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         61 TAPDMRAEIICNVYAN-PPA--KVEWFRDGTAI-TLGGRIDMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~~-~~~--~~~w~~~~~~~-~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +..++.++|.|.+.|. -++  .+.|.+++... ...........+.    .+.|.+..-...+.-.|.|.+....
T Consensus        11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~   86 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD   86 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence            4568899999999988 333  78999986422 1110100111111    1233333322223457999998764

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.13  E-value=0.015  Score=35.66  Aligned_cols=65  Identities=14%  Similarity=0.187  Sum_probs=37.7

Q ss_pred             CCCeEEEEEEEeecCCC--eEEEEECCEEeccCCc-E-EEEecCc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         63 PDMRAEIICNVYANPPA--KVEWFRDGTAITLGGR-I-DMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~-~-~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      .++.+.|.|.+.|..+.  .+.|++++.. ..+.. . .....+.    .+.|.+..-.......|+|.+....
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            46678999999986443  7899999987 32211 0 1111111    1234444322222457999998864

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.11  E-value=0.00071  Score=43.50  Aligned_cols=32  Identities=19%  Similarity=0.108  Sum_probs=25.3

Q ss_pred             cceEEE----eecceEEEeccCCCCCEEEEEEEEcC
Q psy12131          2 KEIELL----YNRESLDLDRVTLKLAGLYQCIASNN   33 (245)
Q Consensus         2 ~~~~~~----~~~~~L~i~~~~~~d~G~Y~C~~~~~   33 (245)
                      +|+++.    .+..+|+|.+++.+|+|.|.|.+...
T Consensus        67 gR~~~~~~~~~~~~sL~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          67 GRFRLLGDLGKKNCSLLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccEEEecCCCCCEEEEEEccCChhhCeEEEEEEEcC
Confidence            466663    33467999999999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.11  E-value=0.005  Score=37.75  Aligned_cols=63  Identities=14%  Similarity=0.213  Sum_probs=36.4

Q ss_pred             CCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcE-EEEecCc----eeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         63 PDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRI-DMHVSSE----KHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~-~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .+..++|.|.+.|.-++  .+.|.++|..+..+... .....+.    .+.|.+..-.  ....|+|.+...
T Consensus        15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~   84 (96)
T cd07697          15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE   84 (96)
T ss_pred             cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence            45678999999985443  78999999876543211 1111111    1233333221  233599998874

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=97.05  E-value=0.0009  Score=42.36  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=21.5

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcC
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNN   33 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~   33 (245)
                      ..+|.|.+++.+|+|.|.|.+.+.
T Consensus        71 ~~~L~I~~~~~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          71 RSSLTIKSAEPEDSAVYLCASSLG   94 (110)
T ss_pred             ccEEEECCCChhhCEEEEEEeeCC
Confidence            467999999999999999999864

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.05  E-value=0.0013  Score=40.57  Aligned_cols=33  Identities=18%  Similarity=0.259  Sum_probs=25.7

Q ss_pred             cceEEEe----ecceEEEeccCCCCCEEEEEEEEcCC
Q psy12131          2 KEIELLY----NRESLDLDRVTLKLAGLYQCIASNNI   34 (245)
Q Consensus         2 ~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~~   34 (245)
                      +|..+..    +..+|+|.+++.+|+|.|.|.+....
T Consensus        51 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   87 (98)
T cd05716          51 GRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGVGDDG   87 (98)
T ss_pred             CCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEcccCC
Confidence            4566542    33569999999999999999888653

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=96.91  E-value=0.0016  Score=40.30  Aligned_cols=31  Identities=13%  Similarity=0.113  Sum_probs=23.6

Q ss_pred             ceEEEee--cceEEEeccCCCCCEEEEEEEEcC
Q psy12131          3 EIELLYN--RESLDLDRVTLKLAGLYQCIASNN   33 (245)
Q Consensus         3 ~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~   33 (245)
                      |+....+  ...|+|.+++++|+|.|.|.+.+.
T Consensus        53 rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~   85 (98)
T cd04984          53 RFSGSKSGNTASLTISGAQTEDEADYYCQVWDS   85 (98)
T ss_pred             CEEEEccCCEEEEEECCCChhhCEEEEEEEccC
Confidence            4444433  346999999999999999988753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=96.89  E-value=0.018  Score=33.91  Aligned_cols=71  Identities=10%  Similarity=-0.074  Sum_probs=35.8

Q ss_pred             eEEEEEeCCCCCceEEEEEEEeec-CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCc
Q psy12131        158 YRLVWQVDTYSGIIQYLLKFRERE-ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSK  234 (245)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~  234 (245)
                      +.|+|...+..|...+. ||++.. ......   ....+.....  ...+.+.....++...|.|.|.|..+.+...+
T Consensus         2 ~~L~C~s~~skP~a~i~-W~k~~~~l~~~~~---~~~~~~~~t~--~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~   73 (80)
T cd05885           2 VELTCLSPRSKPAATLR-WYRDRKELKGVIS---QQENGKTVSV--SNTIRFPVDRKDDGAILSCEASHPALVSQKKQ   73 (80)
T ss_pred             EEEEEeCCCccCCCeEE-EEECCEECCCCcc---cccCCceEEE--EEEEEEEeeeccCCcEEEEEEEChhhCCCCee
Confidence            68999996655554554 666654 111110   0011100111  12344444444445555555999999765443

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.85  E-value=0.024  Score=35.72  Aligned_cols=70  Identities=11%  Similarity=0.250  Sum_probs=45.1

Q ss_pred             ceEEecCCCeEEEEEEEeecCCC---eEEEEECCE-Ee--------------ccCCcEE--EEecCceeEEEEccCCCCC
Q psy12131         57 QWIHTAPDMRAEIICNVYANPPA---KVEWFRDGT-AI--------------TLGGRID--MHVSSEKHSLLVRHIKDTD  116 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~~~---~~~w~~~~~-~~--------------~~~~~~~--~~~~~~~~~l~i~~~~~~d  116 (245)
                      ....+..|..+.|.|.+.|....   .+.|+|... .+              ....++.  .......-.|++.+++.+|
T Consensus         6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D   85 (115)
T cd05721           6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ   85 (115)
T ss_pred             CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence            34557788899999999775443   577887211 10              0112222  2223445688999999999


Q ss_pred             CeEEEEEEEe
Q psy12131        117 FGNYMCQASN  126 (245)
Q Consensus       117 ~g~y~C~~~n  126 (245)
                      .+.|.|..+.
T Consensus        86 Ta~Y~Ca~e~   95 (115)
T cd05721          86 TDIYFCKIEL   95 (115)
T ss_pred             CeEEEEEeee
Confidence            9999997753

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=96.80  E-value=0.0027  Score=39.86  Aligned_cols=23  Identities=26%  Similarity=0.392  Sum_probs=20.3

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcC
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNN   33 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~   33 (245)
                      ..|.|.+++.+|+|.|.|.+.+.
T Consensus        71 ~~L~I~~~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          71 FTLTISRVEPEDAAVYYCQQYGT   93 (106)
T ss_pred             EEEEECCCChHHCEEEEEEEeCC
Confidence            45999999999999999998753

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=96.80  E-value=0.0022  Score=40.96  Aligned_cols=31  Identities=13%  Similarity=0.239  Sum_probs=24.7

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEc
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      +|+.+..+    ...|+|.+++.+|+|.|.|.+..
T Consensus        64 ~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          64 NKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             CCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence            46666543    35699999999999999999874

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=96.79  E-value=0.046  Score=33.41  Aligned_cols=80  Identities=10%  Similarity=0.107  Sum_probs=50.0

Q ss_pred             cccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEE---ecC
Q psy12131        151 RRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAK---NRF  227 (245)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~---N~~  227 (245)
                      .+..|..|+|.|.....  .. ..++|++......|. .....     .......|.|..+.+.+.+.|+|...   ...
T Consensus        11 vV~~G~~VTL~C~~~~~--~~-~f~l~k~g~~~~~~~-~~~~~-----~~~~~a~f~I~~~~~~~~G~Y~C~~~~~~~~~   81 (94)
T cd05711          11 VVPSGENVTLQCHSDIR--FD-RFILYKEGRSKPVLH-LYEKH-----HGGFQASFPLGPVTPAHAGTYRCYGSYNHSLY   81 (94)
T ss_pred             ccCCCCeEEEEEecCCC--CC-EEEEEECCCCCCcee-ccccc-----CCeEEEEEEecCCCcccCEEEEEEEECCCCCc
Confidence            35679999999987432  22 345677655222222 11110     01223678999999988888888863   346


Q ss_pred             CCCCCCcceEEe
Q psy12131        228 GWSRPSKAYVFA  239 (245)
Q Consensus       228 G~~~~s~~~~~~  239 (245)
                      ..+.+|+.+++.
T Consensus        82 ~wS~~Sdpl~l~   93 (94)
T cd05711          82 EWSAPSDPLKIV   93 (94)
T ss_pred             cccCCCCCeEEe
Confidence            788999888753

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=96.71  E-value=0.0017  Score=41.52  Aligned_cols=32  Identities=19%  Similarity=0.277  Sum_probs=25.5

Q ss_pred             cceEEEe----ecceEEEeccCCCCCEEEEEEEEcC
Q psy12131          2 KEIELLY----NRESLDLDRVTLKLAGLYQCIASNN   33 (245)
Q Consensus         2 ~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~   33 (245)
                      +|+.+..    +..+|.|.+++.+|+|.|.|.+...
T Consensus        59 ~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~   94 (116)
T cd07706          59 GRYSVNFQKAQKSISLTISALQLEDSAKYFCALSTL   94 (116)
T ss_pred             CeEEEEEeccCCEEEEEECCCCHHHCEEEEEEEECC
Confidence            4666642    3457999999999999999999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=96.51  E-value=0.0057  Score=38.46  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.6

Q ss_pred             ceEEEeccCCCCCEEEEEEEEc
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ..|+|.+++.+|+|.|.|...+
T Consensus        72 ~~L~I~~~~~~Dsg~YyCa~~~   93 (107)
T cd07700          72 YRLHINRVKPEDSGTYFCMTVG   93 (107)
T ss_pred             EEEEECCCCHHHCEEEEEeEcC
Confidence            4599999999999999999864

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>PHA02633 hypothetical protein; Provisional

Probab=96.48  E-value=0.013  Score=32.04  Aligned_cols=39  Identities=23%  Similarity=0.270  Sum_probs=31.7

Q ss_pred             eeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCC
Q psy12131        104 KHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPN  142 (245)
Q Consensus       104 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~  142 (245)
                      ...|.|-+...+|.|.|.|...|..-....++.+.+...
T Consensus        17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~   55 (63)
T PHA02633         17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR   55 (63)
T ss_pred             cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence            346888888999999999999998877777787776543

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=96.40  E-value=0.012  Score=35.04  Aligned_cols=37  Identities=24%  Similarity=0.455  Sum_probs=26.9

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ++.+|.+.++...|+|.++|.+.-+.-. ..+.+.+.|
T Consensus        49 ~~ktL~~~qv~~qdSG~WtC~V~~~~k~-~~~~~~V~V   85 (88)
T cd07694          49 DKKTLNLVQLGPNDSGTWDCIVSVNSSE-KTLKLDIKV   85 (88)
T ss_pred             CccEEEeceeCcccCCEEEEEEEECceE-EEEEeeEEE
Confidence            5567999999999999999999754222 344454444

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.37  E-value=0.027  Score=31.65  Aligned_cols=50  Identities=20%  Similarity=0.372  Sum_probs=34.6

Q ss_pred             CCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      ....+.|.|..    ...|.|++ |..+....         ..++-+.....+..|.|.|.+.+
T Consensus         5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           5 SEGKVFLKCNG----ATNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             cCceEEEEecC----CCcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc
Confidence            35678999975    24699999 44333211         23577777777788999999877

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA02982 hypothetical protein; Provisional

Probab=96.37  E-value=0.07  Score=37.17  Aligned_cols=81  Identities=11%  Similarity=0.151  Sum_probs=51.1

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEec-CCCeEEEEEEEeecCCCeE
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA-PDMRAEIICNVYANPPAKV   81 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~-~g~~~~l~C~~~~~~~~~~   81 (245)
                      ++++..+.++|+|.++..+..|.|+|.+....+....-.-=|.|+.--.      ..... ......+.|-+-....+-.
T Consensus        92 ~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V------~~~W~e~nNeT~V~CyVgS~~~dvp  165 (251)
T PHA02982         92 ALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKEDI------LYVVEEHNNETIITCFVGSKHGDVP  165 (251)
T ss_pred             EEEEeccceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecceE------EEEEEecCCeEEEEEEEEeccCCCc
Confidence            4566777899999999999999999999986655333233334421111      01111 2334456788866555444


Q ss_pred             EEEECCEE
Q psy12131         82 EWFRDGTA   89 (245)
Q Consensus        82 ~w~~~~~~   89 (245)
                      .|..+|..
T Consensus       166 ~W~V~GVv  173 (251)
T PHA02982        166 RFIVAGIV  173 (251)
T ss_pred             cEEEeeEE
Confidence            89887764

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=96.30  E-value=0.0078  Score=35.71  Aligned_cols=35  Identities=11%  Similarity=0.222  Sum_probs=25.3

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVN   45 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~   45 (245)
                      +.|.|.....+|.|.|+|.|.|..... ..+++.|.
T Consensus        46 s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~   81 (82)
T cd05759          46 STLPITPSDHDTGRTFTCRARNEALPTGKETSVTLD   81 (82)
T ss_pred             EEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence            458888888889999999999875432 44555543

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.30  E-value=0.026  Score=34.76  Aligned_cols=67  Identities=12%  Similarity=0.078  Sum_probs=37.1

Q ss_pred             ecCCCeEEEEEEEeecC-C--CeEEEEECCEEeccCCcEEEEecCc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         61 TAPDMRAEIICNVYANP-P--AKVEWFRDGTAITLGGRIDMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~~~-~--~~~~w~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ...+..+.|.|.+.+.- +  ..+.|.+++.. ...........+.    .+.|.+..-.......|+|.+....
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~   89 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE   89 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence            34678899999999854 2  37999998764 1100001111111    2344444222223346999988754

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>TIGR00864 PCC polycystin cation channel protein

Probab=96.19  E-value=1.4  Score=43.08  Aligned_cols=196  Identities=12%  Similarity=0.044  Sum_probs=106.6

Q ss_pred             cCCCCCEEEEEE--EEcCCCCceeeEEEEEEecCCe-EEeecceEEecCCCeEEEEEEEeecCCCeEEEEECC-EEeccC
Q psy12131         18 VTLKLAGLYQCI--ASNNIGESTSKNFIVNVIYPPE-VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDG-TAITLG   93 (245)
Q Consensus        18 ~~~~d~G~Y~C~--~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~-~~~~~~   93 (245)
                      .+..++|.|+..  |.|..+. ...+..+.|++++. +........+..|+.+++.+.........+.|...+ ......
T Consensus      1834 ~Tf~~aG~ytV~L~AsN~vs~-~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t 1912 (2740)
T TIGR00864      1834 MTFPDAGTFAIRLNASNAVSG-KSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQ 1912 (2740)
T ss_pred             EecCCCeEEEEEEEEEcccCc-ceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeec
Confidence            567799999765  4577666 67777888887764 333333445678999999998877777788887643 322211


Q ss_pred             CcEEEEecCceeEEEEccCCCCCCeEE--EEEEEeCCceeEEEEEEEecCCCCcc---ccCc-cccCCCeeEEEEEeCCC
Q psy12131         94 GRIDMHVSSEKHSLLVRHIKDTDFGNY--MCQASNNLGSSQQFIQLSGIPNIPVF---QKSS-RRLGPDGYRLVWQVDTY  167 (245)
Q Consensus        94 ~~~~~~~~~~~~~l~i~~~~~~d~g~y--~C~~~n~~g~~~~~~~~~~~~~~p~~---~~~~-~~~~~~~~~l~~~~~~~  167 (245)
                      ...         .+ .+...  ..|.|  ...+.|..+.....+.+.+...-...   .... ....+...++.=.....
T Consensus      1913 ~~~---------t~-~HsY~--~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g 1980 (2740)
T TIGR00864      1913 PGP---------RF-SHSFP--RVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRG 1980 (2740)
T ss_pred             CCC---------eE-EeecC--CCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecC
Confidence            110         01 11111  23444  45678888777766665543221111   0001 12334444444344444


Q ss_pred             CCceEEEEEEEee--cCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecC
Q psy12131        168 SGIIQYLLKFRER--EELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE  241 (245)
Q Consensus       168 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~  241 (245)
                      .|+ .|.+.+...  +....|...   ...        ..+..   .....|.+.|.|.|.+|.......++++..
T Consensus      1981 ~~V-~f~W~f~~~~~~g~~~~~~~---G~~--------vty~~---~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~ 2041 (2740)
T TIGR00864      1981 KPV-AFAWTFDLHHLHGDSLVIHM---GKD--------VSYTA---EAAGLLEIQLGAFNALGAENITLQLEAQDA 2041 (2740)
T ss_pred             Cce-EEEEEeeecccCCCcceeec---CCc--------eEEcc---CCCcEEEEEEEEEcccCcccccEEEEEEeh
Confidence            444 344333322  111222111   111        33433   357899999999999998765555555543

Note: this model has been restricted to the amino half because for technical reasons.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.13  E-value=0.05  Score=33.28  Aligned_cols=68  Identities=13%  Similarity=0.239  Sum_probs=41.4

Q ss_pred             ecCCCeEEEEEEEee-cCC--CeEEEEECCEEeccCCcEEE----EecCceeEEEEccCCCCCCe-EEEEEEEeCCc
Q psy12131         61 TAPDMRAEIICNVYA-NPP--AKVEWFRDGTAITLGGRIDM----HVSSEKHSLLVRHIKDTDFG-NYMCQASNNLG  129 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~-~~~--~~~~w~~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g  129 (245)
                      ...|..+++.|.+.+ .|.  ..+.|++....+........    ........+++..- .+|.| .|+|.|.-..+
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l~   87 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHID   87 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEeec
Confidence            368999999999965 444  47999886655543321110    00112245555553 55655 89999986543

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=96.12  E-value=0.0047  Score=38.63  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=20.4

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEc
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      +...|+|.+++.+|+|.|.|.+.+
T Consensus        67 ~~~~L~I~~~~~sDsgtY~Ca~~~   90 (104)
T cd05720          67 NSFVLTLKNFQKENEGYYFCSVAS   90 (104)
T ss_pred             CEEEEEECCCCHHHCEEEEEEEcc
Confidence            345699999999999999998763

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.09  E-value=0.063  Score=32.91  Aligned_cols=66  Identities=12%  Similarity=0.179  Sum_probs=40.6

Q ss_pred             eEEecCCCeEEE-EEEE-eecCCCeEEEEECCEEec-------cCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         58 WIHTAPDMRAEI-ICNV-YANPPAKVEWFRDGTAIT-------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        58 ~~~~~~g~~~~l-~C~~-~~~~~~~~~w~~~~~~~~-------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ...+.+|+.+.+ .|.+ .|.|.++|.|+.+.....       .++.+.+     .+.+.+......+.-.+.|.+....
T Consensus        10 ~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV-----~S~~~l~p~r~d~G~~vtC~V~H~a   84 (97)
T cd07704          10 SLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTV-----TSEYIWVPSRHANGHPLTCVVSHPA   84 (97)
T ss_pred             eeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEE-----EEEEEEEeCHHHCCcEEEEEEeCcc
Confidence            345667888888 7876 567888999997632211       1112222     2355555444445668999998764

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>KOG0196|consensus

Probab=96.04  E-value=0.07  Score=45.01  Aligned_cols=89  Identities=17%  Similarity=0.126  Sum_probs=56.1

Q ss_pred             ccCCCeeEEEEEeC---CCCCceEEEEEEEeec-CCCCeE----EE-eeCCCCCCCcceeeeEEEecCCCCCceEEEEEE
Q psy12131        152 RLGPDGYRLVWQVD---TYSGIIQYLLKFRERE-ELTPWR----NI-VIPSDGSLAGPIYTQSYNITGLQLFTQYEASVL  222 (245)
Q Consensus       152 ~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~-~~~~~~----~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~  222 (245)
                      ...+.++.|.|.++   +...-..|.+-.+.-. ..+.=.    .+ ..+.    ..........+.+|.+.++|+|.|.
T Consensus       341 ~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~----q~gLt~~~V~v~~L~ah~~YTFeV~  416 (996)
T KOG0196|consen  341 NVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPR----QRGLTETSVTVSDLLAHTNYTFEVE  416 (996)
T ss_pred             ecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCC----CCCcccceEEEeccccccccEEEEE
Confidence            47888999999983   3345566776666544 110000    01 1111    1223347889999999999999999


Q ss_pred             EEecCCCCC----CCcceEEecCCCC
Q psy12131        223 AKNRFGWSR----PSKAYVFATEGAE  244 (245)
Q Consensus       223 a~N~~G~~~----~s~~~~~~t~~~~  244 (245)
                      |.|.+..-.    ....+.++|..++
T Consensus       417 AvNgVS~lsp~~~~~a~vnItt~qa~  442 (996)
T KOG0196|consen  417 AVNGVSDLSPFPRQFASVNITTNQAA  442 (996)
T ss_pred             EeecccccCCCCCcceeEEeeccccC
Confidence            999986432    3345677765543

>KOG4802|consensus

Probab=96.04  E-value=0.03  Score=43.06  Aligned_cols=92  Identities=21%  Similarity=0.292  Sum_probs=52.5

Q ss_pred             CCCccccCccccCCCeeEEEEEeCCCCCce--------EEEEEEEeec-CCCCeEEEeeCCCCCCCcceeeeEEEecCCC
Q psy12131        142 NIPVFQKSSRRLGPDGYRLVWQVDTYSGII--------QYLLKFRERE-ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQ  212 (245)
Q Consensus       142 ~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  212 (245)
                      .+|.....-.........+.|.......+.        +|...+...+ ..-.|.++......        ..+...++.
T Consensus       146 l~Pr~k~~y~r~~~g~~av~w~~~~~~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t~~e--------~~~~~t~~r  217 (516)
T KOG4802|consen  146 LPPRPKILYFRRSRGSHAVDWKIESSLLVYYVHVEVRSHWGRGFHASELGPTHWQTVEKTMEE--------NTYIFTDMR  217 (516)
T ss_pred             CCCcchhhhhhhccCceeeeeeeccccceeeeehhhhhhhcccccccccccccceeeeecCCC--------ceeeeeecC
Confidence            344333333334455677788874432221        1111111111 34567777654443        457778999


Q ss_pred             CCceEEEEEEEEecCCC---CCCCcceEEecC
Q psy12131        213 LFTQYEASVLAKNRFGW---SRPSKAYVFATE  241 (245)
Q Consensus       213 ~~~~y~~~v~a~N~~G~---~~~s~~~~~~t~  241 (245)
                      |++-|.||+.|+|..|.   +++|.....+-.
T Consensus       218 PgRwyefrvaavn~~G~rGFs~PSkpf~ssk~  249 (516)
T KOG4802|consen  218 PGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKN  249 (516)
T ss_pred             cceeEEEEEeeeecccccccCCCCCCCCCCCC
Confidence            99999999999999975   555554444433

>PHA02982 hypothetical protein; Provisional

Probab=96.02  E-value=0.029  Score=39.00  Aligned_cols=73  Identities=14%  Similarity=0.363  Sum_probs=50.7

Q ss_pred             EecCCCeEEEEEEEeecCC-CeEEEEECC-EEec----------c--------CCcEEEEecCceeEEEEccCCCCCCeE
Q psy12131         60 HTAPDMRAEIICNVYANPP-AKVEWFRDG-TAIT----------L--------GGRIDMHVSSEKHSLLVRHIKDTDFGN  119 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~-~~~~w~~~~-~~~~----------~--------~~~~~~~~~~~~~~l~i~~~~~~d~g~  119 (245)
                      .+..++.+.|.|....... .+..|+.+. ..+.          .        ...+.+...+..++|+|+.+..+..|-
T Consensus        35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC  114 (251)
T PHA02982         35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC  114 (251)
T ss_pred             hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence            3456899999999533222 367887633 2222          1        123445667788999999999999999


Q ss_pred             EEEEEEeCCceeE
Q psy12131        120 YMCQASNNLGSSQ  132 (245)
Q Consensus       120 y~C~~~n~~g~~~  132 (245)
                      |+|.+....+..+
T Consensus       115 Ytc~~ks~~~k~E  127 (251)
T PHA02982        115 FTCEAKDAEGKEE  127 (251)
T ss_pred             eEEEEecCCCchh
Confidence            9999998665443

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=95.79  E-value=0.13  Score=32.34  Aligned_cols=68  Identities=16%  Similarity=0.174  Sum_probs=47.0

Q ss_pred             CCCeeEEEEEe-CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCC--CCceEEEEEEEEecCC
Q psy12131        154 GPDGYRLVWQV-DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQ--LFTQYEASVLAKNRFG  228 (245)
Q Consensus       154 ~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~--~~~~y~~~v~a~N~~G  228 (245)
                      ......|+|.+ .+.++...|.++|+.. ....|..+..      ...+....+.++...  ....|.+||+|.-.-.
T Consensus        33 ~nf~~iL~W~~~~~~~~~~~ytVq~~~~-~~~~W~~v~~------C~~i~~~~Cdlt~~~~~~~~~Y~~rV~A~~~~~  103 (107)
T PF01108_consen   33 VNFKHILRWDPGPGSPPNVTYTVQYKKY-GSSSWKDVPG------CQNITETSCDLTDETSDPSESYYARVRAEVGNQ  103 (107)
T ss_dssp             ETTEEEEEEEESTTSSSTEEEEEEEEES-STSCEEEECC------EEEESSSEEECTTCCTTTTSEEEEEEEEEETTE
T ss_pred             ECCceEEEeCCCCCCCCCeEEEEEEEec-CCcceeeccc------eecccccceeCcchhhcCcCCEEEEEEEEeCCc
Confidence            35568999999 5556778999999943 4788987621      011122667777643  7889999999976543

...

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=95.60  E-value=0.02  Score=36.68  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=19.3

Q ss_pred             eEEEeccCCCCCEEEEEEEEc
Q psy12131         12 SLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      .|+|.+++.+|+|.|.|.+..
T Consensus        77 ~L~I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          77 YLQLNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             EEEECCCCHHHCEEEEEEEEc
Confidence            699999999999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.52  E-value=0.019  Score=37.07  Aligned_cols=80  Identities=20%  Similarity=0.242  Sum_probs=44.5

Q ss_pred             EecCCCeEEEEEEEeec-----CCCeEEEEECCEEecc--CC--cE--------EE-EecCceeEEEEccCCCCCCeEEE
Q psy12131         60 HTAPDMRAEIICNVYAN-----PPAKVEWFRDGTAITL--GG--RI--------DM-HVSSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~-----~~~~~~w~~~~~~~~~--~~--~~--------~~-~~~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      ...-.+.+.|+|.+...     +...+.|..++..+-.  +.  ..        .+ ....+.++|.+.....- .|.|+
T Consensus        23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT  101 (130)
T PF08204_consen   23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT  101 (130)
T ss_dssp             E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred             EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence            34468899999998642     2236999988876531  11  11        01 00122345776664433 79999


Q ss_pred             EEEEeCCceeEEEEEEEec
Q psy12131        122 CQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus       122 C~~~n~~g~~~~~~~~~~~  140 (245)
                      |.+.......+..+.|+..
T Consensus       102 CeVt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  102 CEVTELSREGETTIELKYR  120 (130)
T ss_dssp             EEEEETTEEEEEEEEEEE-
T ss_pred             EEEEecCCCceEEEEEEEE
Confidence            9999888777777777653

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=95.27  E-value=0.31  Score=30.13  Aligned_cols=74  Identities=12%  Similarity=-0.039  Sum_probs=38.6

Q ss_pred             ccCCCeeEEEEEeCCCCCceEE-EEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQY-LLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      ...++.++|+|.+.+..|...- +.||+.... -.-... ..........  ...+.+..-..++--.|+|+|.+.++.
T Consensus        13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~-l~~~~~-~~~~~~~~~~--~stlt~~~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          13 QPVGKNYTLQCDVPGVAPRQNLTVVLLRGNET-LSRQPF-GDNTKSPVNA--PATITITVDREDHGANFSCETELDLRP   87 (100)
T ss_pred             ccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEE-ccccee-ccccCCCcee--EEEEEEecchhhCCcEEEEEEEeccCc
Confidence            4678999999999877676554 456666441 000011 1100111111  233444333333333666669999875

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd00096 Ig Immunoglobulin domain

Probab=95.08  E-value=0.03  Score=31.28  Aligned_cols=27  Identities=37%  Similarity=0.642  Sum_probs=22.9

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCC
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNI   34 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~   34 (245)
                      .....|.|.+++..|.|.|.|.+.+..
T Consensus        40 ~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096          40 SGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             eeEEEEEECccCcccCcEEEEEEecCc
Confidence            344569999999999999999999765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=94.72  E-value=0.38  Score=28.35  Aligned_cols=28  Identities=21%  Similarity=0.216  Sum_probs=22.5

Q ss_pred             eEEEeecceEEEeccCCCCCEEEEEEEE
Q psy12131          4 IELLYNRESLDLDRVTLKLAGLYQCIAS   31 (245)
Q Consensus         4 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   31 (245)
                      .+.......+........|+|.++|.|.
T Consensus        36 ~k~~~~~~~~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   36 KKSLETKKLVSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             CEEEEESSEEEEESBTCGGSEEEEEEEE
T ss_pred             ccccccceEEEEecCCCCCCEEEEEEEc
Confidence            3455566667888999999999999995

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.71  E-value=0.068  Score=38.72  Aligned_cols=49  Identities=14%  Similarity=0.381  Sum_probs=38.3

Q ss_pred             CCCeEEEEE-CCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         77 PPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        77 ~~~~~~w~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ..|.+.|.- ++..+.......+...|   .|.+.++..++.|.|+|......
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence            357899986 45666666677776554   69999999999999999987644

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>KOG1480|consensus

Probab=94.45  E-value=0.0042  Score=51.28  Aligned_cols=75  Identities=21%  Similarity=0.432  Sum_probs=55.5

Q ss_pred             eecceEEecCCCeEEEEEEE-eecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131         54 VEKQWIHTAPDMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  131 (245)
                      ..+....+..+..+.+.|.. .+.|...+.|++++..+..+........   ..+.+......|.|+|+|++.|..+..
T Consensus       134 ~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d---~~li~~~arlsd~~nytc~a~ni~~~r  209 (909)
T KOG1480|consen  134 QSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASD---HNLIISQARLSDSGNYTCEATNIVAKR  209 (909)
T ss_pred             cChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhc---CCccccchhhhhcccceeeeehhhccc
Confidence            34445567777788888776 6677779999999887776554443332   258888899999999999999976543

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=94.36  E-value=0.68  Score=28.43  Aligned_cols=37  Identities=11%  Similarity=0.005  Sum_probs=24.9

Q ss_pred             CCCCccccCccccCCCeeEEEEEeCCCCCceEEEEEE
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKF  177 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  177 (245)
                      |.+|.+........|..++|.|.+.+..|...-.+.+
T Consensus         1 p~~p~i~~~~~l~~G~~vtv~C~v~~v~P~~~l~v~L   37 (99)
T cd07689           1 PKDPEILLSGPLEEGKPVTVKCEVPDVYPFDRLEIEL   37 (99)
T ss_pred             CCCccCcccCcccCCceEEEEEEecCcccCCceEEEE
Confidence            3455555555568899999999997666664444433

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=94.27  E-value=0.075  Score=29.93  Aligned_cols=23  Identities=30%  Similarity=0.414  Sum_probs=20.0

Q ss_pred             cceEEEeccCCCCCEEEEEEEEc
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ..+|.+.+...+-.|.|.|.+.+
T Consensus        32 ~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691          32 NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             ccEEeccCcccCCCcceEecCcc
Confidence            45688899999999999998876

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=94.13  E-value=0.058  Score=39.05  Aligned_cols=31  Identities=16%  Similarity=0.320  Sum_probs=26.0

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcC
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNN   33 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   33 (245)
                      +++.+...|. |.+.+.+.+++|.|+|...-.
T Consensus        29 ~~~nIT~TG~-L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   29 SYVNITETGK-LMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CeEEEccCce-EEeeccccccCCceEEEEEEE
Confidence            3667776665 999999999999999999854

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=93.98  E-value=0.21  Score=29.62  Aligned_cols=38  Identities=13%  Similarity=0.092  Sum_probs=27.5

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   48 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~   48 (245)
                      ++|.|..-..+|...|+|+|.|..-........|.|.+
T Consensus        44 S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y   81 (82)
T cd05883          44 SQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY   81 (82)
T ss_pred             EEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence            45888777767777999999987644456667777653

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>KOG4802|consensus

Probab=93.77  E-value=0.73  Score=35.88  Aligned_cols=123  Identities=15%  Similarity=0.158  Sum_probs=69.3

Q ss_pred             eEEEEccCCCCCCeEEEEEEEeCCceeEEEE-----EEEe---cCCCCccccCcc-ccCCC-eeEEEEEe-CCCCCceEE
Q psy12131        105 HSLLVRHIKDTDFGNYMCQASNNLGSSQQFI-----QLSG---IPNIPVFQKSSR-RLGPD-GYRLVWQV-DTYSGIIQY  173 (245)
Q Consensus       105 ~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~-----~~~~---~~~~p~~~~~~~-~~~~~-~~~l~~~~-~~~~~~~~~  173 (245)
                      .........+..-..|+..|.|..|....+.     ...-   .|++|....... ...|. ...+.|-+ .++-|+..|
T Consensus       209 ~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~sdlPv~~Y  288 (516)
T KOG4802|consen  209 NTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSKSDLPVEKY  288 (516)
T ss_pred             ceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCCCCCcceee
Confidence            3566677777677777888887766543322     1111   233343333322 22233 34555666 567899999


Q ss_pred             EEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12131        174 LLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP  232 (245)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~  232 (245)
                      .|.|.-.-+.. -..|....  ......  ..+.|..|.|+..|.+.+.|..-.|.++.
T Consensus       289 ki~Ws~~v~s~-k~~m~tks--~~~k~t--hq~si~~L~Pns~Y~VevqAi~y~g~~rL  342 (516)
T KOG4802|consen  289 KITWSLYVNSA-KASMITKS--SYVKDT--HQFSIKELLPNSSYYVEVQAISYLGSRRL  342 (516)
T ss_pred             EEEeehhhhhh-hhhccccc--ceeecc--chhhhhhcCCCCeEEEEEEEEEeccCccc
Confidence            98875533000 00010000  001111  23458999999999999999999998763

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=93.73  E-value=0.89  Score=27.45  Aligned_cols=67  Identities=12%  Similarity=0.187  Sum_probs=42.4

Q ss_pred             ceEEecCCCeEEEEEEEeec-----CCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         57 QWIHTAPDMRAEIICNVYAN-----PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      +...+..|.+++..|.....     ....+.|..++..++.. .+..... ..+.+++.++.....-.|.|...
T Consensus        11 ~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~-qy~~in~-~~SsVT~~~~~~~~~~L~cC~l~   82 (89)
T PF06328_consen   11 PSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS-QYRVIND-TVSSVTLPNLNPTGATLFCCKLA   82 (89)
T ss_dssp             SSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG-CEEEEST-TEEEEEESS--SSEEEEEEEEEC
T ss_pred             CCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh-HcceeCC-eEEEEEEccCCCCCceEEEEEEc
Confidence            34457899999999998532     33579999998866654 4444433 34778888877655556666643

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>TIGR00864 PCC polycystin cation channel protein

Probab=93.53  E-value=8.7  Score=38.21  Aligned_cols=192  Identities=10%  Similarity=0.104  Sum_probs=100.5

Q ss_pred             eccCCCCCEEEEEE--EEcCCCCceeeEEEEEEecCC-eEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCE-Eec
Q psy12131         16 DRVTLKLAGLYQCI--ASNNIGESTSKNFIVNVIYPP-EVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGT-AIT   91 (245)
Q Consensus        16 ~~~~~~d~G~Y~C~--~~~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~-~~~   91 (245)
                      ..+...+.|.|...  +.|..|. ..+...+.|.++- .+........+..+..+.+.-.........+.|...+. ...
T Consensus      1662 ~~vt~~~pG~Y~VtL~aSN~vG~-~t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~ 1740 (2740)
T TIGR00864      1662 AKLNPLEAGPCDIFLQAANLLGQ-ATADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLE 1740 (2740)
T ss_pred             eEEecCCCceEEEEEEEeecccc-eeeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcc
Confidence            34556788888654  4477777 4666666665532 22222222334568888887666666667899986543 211


Q ss_pred             -cCCcEEEEecCceeEEEEccCCCCCCeEEE--EEEEeCCceeEEEEEEEecCCCC--ccccCc-----cccCCCeeEEE
Q psy12131         92 -LGGRIDMHVSSEKHSLLVRHIKDTDFGNYM--CQASNNLGSSQQFIQLSGIPNIP--VFQKSS-----RRLGPDGYRLV  161 (245)
Q Consensus        92 -~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~--C~~~n~~g~~~~~~~~~~~~~~p--~~~~~~-----~~~~~~~~~l~  161 (245)
                       ....+.         .     .....|.|.  ..+.|..|+...++.+.+.....  .+....     -...+.++.+.
T Consensus      1741 ~s~p~~t---------H-----tf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~ 1806 (2740)
T TIGR00864      1741 TSEPFMS---------H-----SFPSAGLHLVTMKAFNELGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQ 1806 (2740)
T ss_pred             cCCCceE---------E-----EccCCceEEEEEEEEccccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEE
Confidence             111111         1     122456665  45778888766666555542221  111110     01122333332


Q ss_pred             EEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecC
Q psy12131        162 WQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE  241 (245)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~  241 (245)
                      =.+..+.+ ..|.+.+.+..  ...       .         ..... -....+.|.+++.|.|.+|....+..+.++..
T Consensus      1807 a~vstGsn-Vsw~W~f~~g~--s~~-------g---------k~v~~-Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~ 1866 (2740)
T TIGR00864      1807 GELATGTN-VSWCWAIDGGS--SKM-------G---------KHACM-TFPDAGTFAIRLNASNAVSGKSASREFFAEEP 1866 (2740)
T ss_pred             EEccCCCe-eEEEEEeCCCC--ccc-------c---------ceeEE-ecCCCeEEEEEEEEEcccCcceeeeeEEEEEe
Confidence            22222223 35665443211  010       0         11111 23466789999999999998888777776654


Q ss_pred             C
Q psy12131        242 G  242 (245)
Q Consensus       242 ~  242 (245)
                      .
T Consensus      1867 I 1867 (2740)
T TIGR00864      1867 I 1867 (2740)
T ss_pred             c
Confidence            3

Note: this model has been restricted to the amino half because for technical reasons.

>PHA03042 CD47-like protein; Provisional

Probab=93.50  E-value=0.78  Score=33.64  Aligned_cols=71  Identities=21%  Similarity=0.323  Sum_probs=45.0

Q ss_pred             cCCCeEEEEEEEeec-----CCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         62 APDMRAEIICNVYAN-----PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        62 ~~g~~~~l~C~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      .-.+.+.++|.....     ....+.|..++..+-.....      ..++|.+.. ...-.|+|+|.+.+........+.
T Consensus        29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~Ie  101 (286)
T PHA03042         29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIE  101 (286)
T ss_pred             ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEec-cccCCCceeEEEeecccCccEEEE
Confidence            357789999998642     34479999988765432221      123455443 333479999999986655555555


Q ss_pred             EEe
Q psy12131        137 LSG  139 (245)
Q Consensus       137 ~~~  139 (245)
                      ++.
T Consensus       102 Lk~  104 (286)
T PHA03042        102 LQY  104 (286)
T ss_pred             EEE
Confidence            553

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=93.24  E-value=0.078  Score=34.29  Aligned_cols=37  Identities=19%  Similarity=0.286  Sum_probs=24.3

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      .+.++|.|...+.- .|+|+|++...... ....+.|..
T Consensus        83 kG~aSL~~~~~~a~-~GnYTCeVt~~~~e-ge~~i~Lk~  119 (130)
T PF08204_consen   83 KGNASLKMDKSDAV-EGNYTCEVTELSRE-GETTIELKY  119 (130)
T ss_dssp             GTB--EEEEHHHHH--EEEEEEEEETTEE-EEEEEEEEE
T ss_pred             CCCEEEEEcchhcc-ccceEEEEEecCCC-ceEEEEEEE
Confidence            34566888876655 99999999976654 455666655

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>KOG4597|consensus

Probab=93.05  E-value=0.17  Score=39.95  Aligned_cols=81  Identities=15%  Similarity=0.166  Sum_probs=57.1

Q ss_pred             EecCCCeEEEEEEEeecCCCeEEEEE---CCEEeccCCcEEE--EecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEE
Q psy12131         60 HTAPDMRAEIICNVYANPPAKVEWFR---DGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF  134 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~~~~~w~~---~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  134 (245)
                      .+-.++...++|...|.+.+.|.|.+   +.+.+.......+  ........|.|-+-+..|+|-|+|.+.+..|.....
T Consensus       207 ~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~rd  286 (560)
T KOG4597|consen  207 FVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLRRD  286 (560)
T ss_pred             hcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceeecc
Confidence            34567888999999999999999976   3332221111111  111134578899999999999999999999988887


Q ss_pred             EEEEec
Q psy12131        135 IQLSGI  140 (245)
Q Consensus       135 ~~~~~~  140 (245)
                      +.+.+.
T Consensus       287 v~c~s~  292 (560)
T KOG4597|consen  287 VPCSSV  292 (560)
T ss_pred             ceeeee
Confidence            776653

>KOG0613|consensus

Probab=92.06  E-value=1.6  Score=39.14  Aligned_cols=124  Identities=9%  Similarity=-0.003  Sum_probs=78.3

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec----------------CCeEEe---ecceEEecCCCeEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY----------------PPEVSV---EKQWIHTAPDMRAEI   69 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----------------~p~~~~---~~~~~~~~~g~~~~l   69 (245)
                      ++.++.|.+....+.+.|+|...+..+.. ...+...+..                +|.+..   ....+....+..+.+
T Consensus       276 ~~~t~~i~~~~~~~~~s~t~~~~~~~~q~-~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m  354 (1205)
T KOG0613|consen  276 GGNTKTIQNDGPEPELSWTVADKRQGCQD-RFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEM  354 (1205)
T ss_pred             CCccccccccCCccccceeeecccCCccc-ceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceee
Confidence            45568888889999999999998876653 2222222210                111111   112233445677889


Q ss_pred             EEEEeecCCCe-EEEEECCEEeccCC--cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE
Q psy12131         70 ICNVYANPPAK-VEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ  133 (245)
Q Consensus        70 ~C~~~~~~~~~-~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  133 (245)
                      .|...+.+.|. +.|+++........  .+..........+.+..+...+.+.+.|.+.|..|....
T Consensus       355 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~  421 (1205)
T KOG0613|consen  355 PTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQT  421 (1205)
T ss_pred             cccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccc
Confidence            99998888875 99998765444332  111222223346778888888899999999999886544

>PHA03286 envelope glycoprotein E; Provisional

Probab=92.06  E-value=4  Score=32.48  Aligned_cols=77  Identities=10%  Similarity=0.042  Sum_probs=51.3

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec-----CCeEE--eec------------ceEEecCCCeEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY-----PPEVS--VEK------------QWIHTAPDMRAEI   69 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-----~p~~~--~~~------------~~~~~~~g~~~~l   69 (245)
                      .++.|+|.+++.+++|.|+-...|+.|......+.|.|..     +|.+.  ..|            .......|+++.+
T Consensus       125 ~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~v  204 (492)
T PHA03286        125 RGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDA  204 (492)
T ss_pred             CCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEE
Confidence            3466999999999999999999988777667778888852     12221  111            2233457888876


Q ss_pred             EEEEee--c---CCCeEEEEE
Q psy12131         70 ICNVYA--N---PPAKVEWFR   85 (245)
Q Consensus        70 ~C~~~~--~---~~~~~~w~~   85 (245)
                      .-....  .   -...+.|+.
T Consensus       205 Sv~l~~~~~d~~Fsl~i~W~y  225 (492)
T PHA03286        205 SVTAHLTNWAGAFSLEFRVLF  225 (492)
T ss_pred             EEEEeecccCCCceEEEEEEE
Confidence            655541  1   123788975

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=91.96  E-value=1.6  Score=26.44  Aligned_cols=13  Identities=8%  Similarity=0.179  Sum_probs=10.7

Q ss_pred             CCeeEEEEEeCCC
Q psy12131        155 PDGYRLVWQVDTY  167 (245)
Q Consensus       155 ~~~~~l~~~~~~~  167 (245)
                      ++.+.|.|.+.+.
T Consensus        14 ~~~~~L~C~a~gF   26 (93)
T cd07698          14 DGSLTLSCHATGF   26 (93)
T ss_pred             CCcEEEEEEEEEE
Confidence            5689999999664

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>KOG0613|consensus

Probab=91.83  E-value=1.3  Score=39.73  Aligned_cols=164  Identities=9%  Similarity=-0.074  Sum_probs=89.7

Q ss_pred             ecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131         61 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      ...+....+.|.......+.+.|+.+.......       .....+..+.+....+.+.|+|...+..+.....+.....
T Consensus       241 t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~-------~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~  313 (1205)
T KOG0613|consen  241 TLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK-------HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAP  313 (1205)
T ss_pred             ccchhheeeeEEeecCCCchHHHHhcchhhhcc-------cCCCccccccccCCccccceeeecccCCcccceeeeEEee
Confidence            345666777777777666766666544322211       0122355666666777788888888877766554443321


Q ss_pred             -----CCCCc----------cc------cCccccCCCeeEEEEEeCCCCCceEEEEEEEeec---CCCCeEEEeeCCCCC
Q psy12131        141 -----PNIPV----------FQ------KSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE---ELTPWRNIVIPSDGS  196 (245)
Q Consensus       141 -----~~~p~----------~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  196 (245)
                           +.|..          ..      .......+.-+++.|...+..+.-.+. ++....   ....|.....  .  
T Consensus       314 i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~--~--  388 (1205)
T KOG0613|consen  314 IGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQ-GYHGEEVSSESLGALPCPV--G--  388 (1205)
T ss_pred             ccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchhe-eeccccccccccccccccc--c--
Confidence                 11111          00      001223445677777765543222111 222221   1222321111  1  


Q ss_pred             CCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEe
Q psy12131        197 LAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       197 ~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~  239 (245)
                         ......+.+.++.++..|..+|.|.|..|.....+...++
T Consensus       389 ---~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs  428 (1205)
T KOG0613|consen  389 ---TVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVS  428 (1205)
T ss_pred             ---cccCcchhhhhcCcccccccccceeccCCcccccchhhcc
Confidence               1122567788899999999999999999988777654443

>PHA03283 envelope glycoprotein E; Provisional

Probab=91.67  E-value=3.8  Score=33.23  Aligned_cols=40  Identities=28%  Similarity=0.324  Sum_probs=33.1

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   48 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~   48 (245)
                      .+.+.|+|.+++.+++|.|+-...+..+ .....+.|+|+.
T Consensus       131 ~~~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~  170 (542)
T PHA03283        131 PERSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKK  170 (542)
T ss_pred             CCCCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecC
Confidence            3456699999999999999999998766 467778888876

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=91.62  E-value=1.8  Score=25.57  Aligned_cols=49  Identities=14%  Similarity=0.146  Sum_probs=29.3

Q ss_pred             CeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEE-EeCCceeEEEEEE
Q psy12131         79 AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA-SNNLGSSQQFIQL  137 (245)
Q Consensus        79 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~-~n~~g~~~~~~~~  137 (245)
                      +.+.|...+.......          ....+......|.|.+.|.| .+........+.+
T Consensus        27 ~~~~l~~~~~k~~~~~----------~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i   76 (80)
T PF05790_consen   27 PSLFLENPGKKSLETK----------KLVSTFTPTTEDSGTWVCTASDNEPKERESKIEI   76 (80)
T ss_dssp             EEEEEECSSCEEEEES----------SEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEE
T ss_pred             hhheeeccCccccccc----------eEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEE
Confidence            4677766554433222          13455566678999999999 6655444444443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=91.37  E-value=1.7  Score=33.29  Aligned_cols=35  Identities=20%  Similarity=0.558  Sum_probs=23.3

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCC--eEEEEEC
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KVEWFRD   86 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~w~~~   86 (245)
                      ++|.+.+...   ...+ .+.|.|.+.|.-+.  .+.|.++
T Consensus       202 vpP~V~Vt~k---~~~~-~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        202 VTPTVKVTGE---ELGD-NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CCCceEEecc---cCCC-CceEEEEEEeEeCCccEEEEEec
Confidence            4566555432   1123 57999999996554  7889998

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=91.32  E-value=1.6  Score=24.39  Aligned_cols=52  Identities=23%  Similarity=0.209  Sum_probs=30.1

Q ss_pred             EEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCC-cceEE
Q psy12131        176 KFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS-KAYVF  238 (245)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s-~~~~~  238 (245)
                      .|+..+..+.|.......          ..+...+| +.+.|+|+|.|.|..|..... ..+.+
T Consensus        11 ~Y~l~g~d~~W~~~~~~~----------~~~~~~~L-~~G~Y~l~V~a~~~~~~~~~~~~~l~i   63 (66)
T PF07495_consen   11 RYRLEGFDDEWITLGSYS----------NSISYTNL-PPGKYTLEVRAKDNNGKWSSDEKSLTI   63 (66)
T ss_dssp             EEEEETTESSEEEESSTS-----------EEEEES---SEEEEEEEEEEETTS-B-SS-EEEEE
T ss_pred             EEEEECCCCeEEECCCCc----------EEEEEEeC-CCEEEEEEEEEECCCCCcCcccEEEEE
Confidence            343333457787653221          16777777 555999999999999876554 34443

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=91.16  E-value=1.6  Score=33.98  Aligned_cols=77  Identities=16%  Similarity=0.217  Sum_probs=46.5

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeec--CCCeEEEEEC
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN--PPAKVEWFRD   86 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~~~w~~~   86 (245)
                      ..++|+|.++..+.+|-|+|+|...... ....-=|.|...-.+...     ........+.|-+...  .++.+.|..+
T Consensus       344 k~STLTIkka~I~N~GCY~~~a~~g~~~-~ec~~Cl~V~d~V~f~W~-----~e~~n~T~V~Cyv~sy~~kp~si~wkvn  417 (500)
T PHA02914        344 KNSTLTIKKAHINNAGCYEAQAFMGKFK-EECRHCFKVADHVFFKWN-----TEGDNETKVACYAAQYDMQPFSILWKSN  417 (500)
T ss_pred             hhceEEeeeEEEEcCCceEEEEecCcch-hhhhhheEeccEEEEEEE-----eccCceEEEEEEEEecccCCceeEEEEc
Confidence            3578999999999999999999975332 222222333221111100     1112334567887554  4457999998


Q ss_pred             CEEec
Q psy12131         87 GTAIT   91 (245)
Q Consensus        87 ~~~~~   91 (245)
                      |....
T Consensus       418 GV~~~  422 (500)
T PHA02914        418 GVSFG  422 (500)
T ss_pred             cEEec
Confidence            87654

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=91.06  E-value=2.1  Score=25.39  Aligned_cols=23  Identities=9%  Similarity=0.098  Sum_probs=13.7

Q ss_pred             eEEEEEeCCCCCceEEEEEEEeec
Q psy12131        158 YRLVWQVDTYSGIIQYLLKFRERE  181 (245)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~~  181 (245)
                      +.|+|.+.+..|. .-..|+++..
T Consensus         2 ~~LtC~a~gf~P~-~~itW~kng~   24 (83)
T cd05884           2 MQLTCKTSGSKPA-ADIRWFKNDK   24 (83)
T ss_pred             EEEEEEeCCccCC-CEEEEEECCE
Confidence            5789999654444 3344565544

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology

Probab=90.82  E-value=2.4  Score=26.28  Aligned_cols=60  Identities=20%  Similarity=0.209  Sum_probs=34.2

Q ss_pred             eEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecC--CCCCCCcceEEec
Q psy12131        171 IQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF--GWSRPSKAYVFAT  240 (245)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~--G~~~~s~~~~~~t  240 (245)
                      ..|.+.+.... ...-..... ...        ..+.+.+|.+++.|=++|.|....  -.|.+|...-++|
T Consensus        44 ~~Y~v~~~~~~-~~~~~~~~~-~~~--------~~~~l~~L~p~t~YCv~V~~~~~~~~~~s~~S~~~C~~t  105 (106)
T PF09294_consen   44 LSYNVSYWKNG-SNEKKKEIE-TKN--------SSVTLSDLKPGTNYCVSVQAFSPSQNKNSQPSEPQCITT  105 (106)
T ss_dssp             -EEEEEEEETT-TSCEEEEEE-SSS--------EEEEEES--TTSEEEEEEEEEECSSTEEEEEBSEEEEE-
T ss_pred             eEEEEEEEeCC-CccceEEEe-ecC--------CEEEEeCCCCCCCEEEEEEEEeccCCCcCCCCCCEeEeC
Confidence            56888877755 221112222 221        567899999999999999993332  2466666655554

They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=90.41  E-value=3.1  Score=26.31  Aligned_cols=43  Identities=14%  Similarity=0.151  Sum_probs=23.2

Q ss_pred             ecCCCCccccCc-cccCCCeeEEEEEeCCCCCceEEEEEEEeec
Q psy12131        139 GIPNIPVFQKSS-RRLGPDGYRLVWQVDTYSGIIQYLLKFRERE  181 (245)
Q Consensus       139 ~~~~~p~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  181 (245)
                      ..|..|.+.... ....++.++|.|.+.+..|......|+++..
T Consensus         4 ~~P~~p~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~   47 (111)
T cd05772           4 AKPSVPVVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGN   47 (111)
T ss_pred             cCCCCcEeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCE
Confidence            445555444332 2345677899999966444322333555443

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=90.10  E-value=0.24  Score=31.35  Aligned_cols=23  Identities=13%  Similarity=0.374  Sum_probs=19.3

Q ss_pred             ecceEEEeccCCCCCEEEEEEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIAS   31 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~   31 (245)
                      +..+|+|.+++.+|++.|.|...
T Consensus        72 ntv~L~l~~L~a~DTa~Y~Ca~e   94 (115)
T cd05721          72 EQVNFTLQNLRANQTDIYFCKIE   94 (115)
T ss_pred             CEEEEEEcCCCHHHCeEEEEEee
Confidence            34559999999999999999653

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>KOG1480|consensus

Probab=88.75  E-value=0.34  Score=40.80  Aligned_cols=38  Identities=26%  Similarity=0.375  Sum_probs=28.9

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      ...|.|..+...|+|+|+|+|.|-.+...+..+.+.|.
T Consensus       182 d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy  219 (909)
T KOG1480|consen  182 DHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY  219 (909)
T ss_pred             cCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence            34599999999999999999999876644444444443

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=88.34  E-value=3.6  Score=24.20  Aligned_cols=23  Identities=9%  Similarity=0.013  Sum_probs=13.3

Q ss_pred             eEEEEEeCCCCCceEEEEEEEeec
Q psy12131        158 YRLVWQVDTYSGIIQYLLKFRERE  181 (245)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~~  181 (245)
                      +.|.|.+.+..|.. -..|+++..
T Consensus         2 ~~L~C~~~~~~P~~-~v~W~~~~~   24 (82)
T cd05761           2 VELTCTSSGSKPAA-TIRWFKGDK   24 (82)
T ss_pred             EEEEEEecCcCcCC-eEEEEECCE
Confidence            67999995543433 334555543

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>KOG4258|consensus

Probab=87.90  E-value=3.7  Score=35.55  Aligned_cols=94  Identities=17%  Similarity=0.227  Sum_probs=61.1

Q ss_pred             cccCCCeeEEEEEeCC---CCCceEEEEEEEeec-------------CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCC
Q psy12131        151 RRLGPDGYRLVWQVDT---YSGIIQYLLKFRERE-------------ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF  214 (245)
Q Consensus       151 ~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~  214 (245)
                      ...+.+++.|+|..-.   ....++|.+.|+.+-             ....|....+...+-...+.....+.+.+|+|+
T Consensus       497 ~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~~LkP~  576 (1025)
T KOG4258|consen  497 TVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLDGLKPW  576 (1025)
T ss_pred             EEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehhcCCcc
Confidence            3466789999999822   234788998887653             345676665554421112233346889999999


Q ss_pred             ceEEEEEEEEe--cCCCC--CCCcceEEecCCCC
Q psy12131        215 TQYEASVLAKN--RFGWS--RPSKAYVFATEGAE  244 (245)
Q Consensus       215 ~~y~~~v~a~N--~~G~~--~~s~~~~~~t~~~~  244 (245)
                      +.|-+.|.+..  ..+..  ..|...-++|.+..
T Consensus       577 TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~  610 (1025)
T KOG4258|consen  577 TQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDI  610 (1025)
T ss_pred             ceeEEEEeeeehhhhccccccccceEEEEecCCC
Confidence            99999988862  22222  35677888887653

>PHA03281 envelope glycoprotein E; Provisional

Probab=87.47  E-value=15  Score=30.27  Aligned_cols=76  Identities=14%  Similarity=0.173  Sum_probs=48.8

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCC-------eEEeec----------ceEEecCCCeEEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP-------EVSVEK----------QWIHTAPDMRAEIICN   72 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p-------~~~~~~----------~~~~~~~g~~~~l~C~   72 (245)
                      .+.|+|.+++.+++|.|+-......|......+.|.|+..+       .+...+          .......|+++.+.-.
T Consensus       297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~  376 (642)
T PHA03281        297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH  376 (642)
T ss_pred             CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence            45699999999999999998887767655567778887532       111111          1223456777766555


Q ss_pred             Eeec--CC---CeEEEEE
Q psy12131         73 VYAN--PP---AKVEWFR   85 (245)
Q Consensus        73 ~~~~--~~---~~~~w~~   85 (245)
                      ....  ..   ..+.|+.
T Consensus       377 L~s~ihD~pFsleI~Wyy  394 (642)
T PHA03281        377 LQYKIHDAPFDLLLEWLY  394 (642)
T ss_pred             EeeeccCCCceeEEEEEE
Confidence            4432  22   3788975

>PHA03052 Hypothetical protein; Provisional

Probab=87.21  E-value=2.3  Score=23.88  Aligned_cols=36  Identities=25%  Similarity=0.318  Sum_probs=27.1

Q ss_pred             ceEEecCCCeEEEEEEEeec---CCCeEEEEECCEEecc
Q psy12131         57 QWIHTAPDMRAEIICNVYAN---PPAKVEWFRDGTAITL   92 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~---~~~~~~w~~~~~~~~~   92 (245)
                      ..+.+..|.+++|.|.+.-.   ..+.+.|..|+..+..
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~   43 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEE   43 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEec
Confidence            45677899999999998532   2357899988877743

>COG5475 Uncharacterized small protein [Function unknown]

Probab=87.15  E-value=2.3  Score=22.67  Aligned_cols=33  Identities=15%  Similarity=0.319  Sum_probs=26.4

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCC
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGE   36 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~   36 (245)
                      ..+++..++...+++..+.+  |.|.|.-.+..|.
T Consensus         9 dvV~lKsGGP~Mtvs~~ss~--Gmy~C~Wf~g~g~   41 (60)
T COG5475           9 DVVTLKSGGPRMTVSGYSSD--GMYECRWFDGYGV   41 (60)
T ss_pred             cEEEeecCCceEEEeccccC--CeEEEEEecCCCc
Confidence            45677778888888887755  9999999998775

>PHA03282 envelope glycoprotein E; Provisional

Probab=87.08  E-value=2.4  Score=33.84  Aligned_cols=44  Identities=14%  Similarity=0.130  Sum_probs=31.1

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEe
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVI   47 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~   47 (245)
                      .|+.+.+  .+|.|.+++.+|+|.|+-.+....... ..+.+.|+|.
T Consensus       117 ~rvs~~n--~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~  161 (540)
T PHA03282        117 PRVAVVN--GTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG  161 (540)
T ss_pred             cceeEec--ceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence            5777773  349999999999999999876433221 3455666664

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=86.01  E-value=1.2  Score=35.84  Aligned_cols=76  Identities=16%  Similarity=0.277  Sum_probs=11.7

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeE--------Ee------------ecceEEecCCCeEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV--------SV------------EKQWIHTAPDMRAEI   69 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~--------~~------------~~~~~~~~~g~~~~l   69 (245)
                      .+.|.|.+++.+|+|.|+-...+..+......+.|.|..+...        ..            ....+....|+++.+
T Consensus        88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~  167 (439)
T PF02480_consen   88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL  167 (439)
T ss_dssp             ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred             CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence            3459999999999999999998776665555677777642111        01            112334567888777


Q ss_pred             EEEEee--cC-C---CeEEEEE
Q psy12131         70 ICNVYA--NP-P---AKVEWFR   85 (245)
Q Consensus        70 ~C~~~~--~~-~---~~~~w~~   85 (245)
                      .-....  .. .   ..+.|+.
T Consensus       168 ~v~l~~~~~d~~~f~~~i~W~~  189 (439)
T PF02480_consen  168 SVHLQSEAHDDPPFSLEIDWYY  189 (439)
T ss_dssp             --EEEEEESSS--EEEEEEEEE
T ss_pred             eEEEEeccCCCCCeeEEEEEEE
Confidence            655432  22 2   2788975

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>cd00098 IgC Immunoglobulin Constant domain

Probab=85.74  E-value=3.8  Score=24.65  Aligned_cols=14  Identities=7%  Similarity=-0.028  Sum_probs=11.6

Q ss_pred             CCCeeEEEEEeCCC
Q psy12131        154 GPDGYRLVWQVDTY  167 (245)
Q Consensus       154 ~~~~~~l~~~~~~~  167 (245)
                      .+..+.|.|.+.+.
T Consensus        12 ~~~~~~L~C~a~g~   25 (95)
T cd00098          12 LGGSVTLTCLATGF   25 (95)
T ss_pred             cCCCeEEEEEEeeE
Confidence            57799999999665

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>PLN02533 probable purple acid phosphatase

Probab=85.55  E-value=11  Score=30.42  Aligned_cols=35  Identities=17%  Similarity=0.096  Sum_probs=27.0

Q ss_pred             eeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCCC
Q psy12131        203 TQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA  243 (245)
Q Consensus       203 ~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~~  243 (245)
                      .....|.+|++++.|.|+|-      ....|....|+|.+.
T Consensus       102 iH~v~l~~L~p~T~Y~Yrvg------~~~~s~~~~F~T~p~  136 (427)
T PLN02533        102 INDVVIGPLKPNTVYYYKCG------GPSSTQEFSFRTPPS  136 (427)
T ss_pred             EEEEEeCCCCCCCEEEEEEC------CCCCccceEEECCCC
Confidence            45678999999999999973      223467788888764

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=84.64  E-value=6.2  Score=23.31  Aligned_cols=23  Identities=4%  Similarity=-0.130  Sum_probs=13.9

Q ss_pred             eEEEEEeCCCCCceEEEEEEEeec
Q psy12131        158 YRLVWQVDTYSGIIQYLLKFRERE  181 (245)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~~~  181 (245)
                      +.|+|.+.+..|.. -+.|+++..
T Consensus         2 ~~LtC~a~g~~P~~-~ItW~k~g~   24 (83)
T cd07705           2 AKLRCTSSGSKPAA-NIKWRKGDQ   24 (83)
T ss_pred             EEEEEEecCccCCC-EeEEEECCE
Confidence            57999996654443 445665543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=84.12  E-value=3.1  Score=32.51  Aligned_cols=40  Identities=20%  Similarity=0.234  Sum_probs=28.9

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEE
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS   53 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~   53 (245)
                      ++.+.|++.+|.|.|+|.+......  +-...+.|...|.+.
T Consensus        82 sf~~~Nvs~sdEGrYrCIFYLn~~E--tyrH~I~vrVmPKId  121 (500)
T PHA02914         82 SFIEENIGEHEDGDFKCIFYLGDNE--SHKHEILVRKAPKID  121 (500)
T ss_pred             EEEecCcccccCCcEEEEEEeCCce--eEEEEEEEEEcccee
Confidence            4788899999999999999975433  444445555566654

>KOG4258|consensus

Probab=84.11  E-value=3.7  Score=35.57  Aligned_cols=78  Identities=17%  Similarity=0.178  Sum_probs=50.5

Q ss_pred             CCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        154 GPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       154 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      +.+.+.|.|..  ..++-+..|.+.|+....+....-+....      ........+..|. .+.|.++|+|..-.|.|.
T Consensus       841 ~~~~v~l~w~EP~~pNGli~~Y~Vk~r~~~~et~v~cvsR~~------~~k~~gv~l~~l~-~G~y~~~vratSlaGng~  913 (1025)
T KOG4258|consen  841 EMNSVILRWLEPKEPNGLILNYEVKYRRNGDETHVECVSRMD------YAKAGGVYLKRLN-PGNYSVRVRATSLAGNGS  913 (1025)
T ss_pred             CcceEEEecCCCCCCCccEEEEEEEEeeccCcchhhhhhhhh------hhhcCceEEEecC-CCcEEEEEEEEeeccCCC
Confidence            56788999997  56778899999999765222111010000      0011334555564 458999999999999999


Q ss_pred             CCcceEE
Q psy12131        232 PSKAYVF  238 (245)
Q Consensus       232 ~s~~~~~  238 (245)
                      +...+.+
T Consensus       914 ~t~~~~~  920 (1025)
T KOG4258|consen  914 WTESVIF  920 (1025)
T ss_pred             CcCCcce
Confidence            8876443

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=83.66  E-value=6  Score=24.12  Aligned_cols=16  Identities=13%  Similarity=0.316  Sum_probs=11.0

Q ss_pred             CCCeeEEEEEeCCCCC
Q psy12131        154 GPDGYRLVWQVDTYSG  169 (245)
Q Consensus       154 ~~~~~~l~~~~~~~~~  169 (245)
                      ..+.+.|.|.+.+..|
T Consensus        13 ~~~~~~L~C~a~gFyP   28 (94)
T cd05847          13 TSETIQLLCLISGYTP   28 (94)
T ss_pred             CCCCEEEEEEEEeEEC
Confidence            3456889999965433

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=83.10  E-value=7.8  Score=23.24  Aligned_cols=56  Identities=20%  Similarity=0.292  Sum_probs=35.5

Q ss_pred             eEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE
Q psy12131         66 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ  133 (245)
Q Consensus        66 ~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  133 (245)
                      ...|.+.+.+. ...+.|+.|+..+......        ..+.+   .....|.|+..+....|....
T Consensus        31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~--------~~~~~---~~~~~G~h~l~vvD~~G~~~~   86 (89)
T PF06832_consen   31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQPG--------HQLFW---QPDRPGEHTLTVVDAQGRSAS   86 (89)
T ss_pred             cceEEEEEeCC-CCcEEEEECCEEcccCCCC--------CeEEe---CCCCCeeEEEEEEcCCCCEEE
Confidence            45566666665 4599999999988433221        11222   224568999988887776544

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>KOG4152|consensus

Probab=82.82  E-value=1.4  Score=35.55  Aligned_cols=34  Identities=26%  Similarity=0.066  Sum_probs=30.0

Q ss_pred             ecCCCCCceEEEEEEEEecCCCCCCCcceEEecC
Q psy12131        208 ITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE  241 (245)
Q Consensus       208 i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~  241 (245)
                      -..|.++..|+|||.|.|..|.+.+|..+.+.|-
T Consensus       651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc  684 (830)
T KOG4152|consen  651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKTC  684 (830)
T ss_pred             ccccccccceeeeeeeeeccCCCchhhheeeeec
Confidence            3467899999999999999999999998888764

>PHA03269 envelope glycoprotein C; Provisional

Probab=82.16  E-value=26  Score=28.57  Aligned_cols=77  Identities=12%  Similarity=0.068  Sum_probs=50.5

Q ss_pred             eEEEEccCCCCCCeEEEEEEEeCC---ceeEEEEEEEecCCCCccccCccccCCCeeEEEEEeC-CCCCceEEEEEEEee
Q psy12131        105 HSLLVRHIKDTDFGNYMCQASNNL---GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVD-TYSGIIQYLLKFRER  180 (245)
Q Consensus       105 ~~l~i~~~~~~d~g~y~C~~~n~~---g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~  180 (245)
                      ..|.|.++...+.|.|.-...+..   ......+.|...-.|-..+....++.|+...-.|.+. -++|-..+..|+++.
T Consensus       289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng  368 (566)
T PHA03269        289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNF  368 (566)
T ss_pred             cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            468999999999999987755322   2233445554443343444445578899999999994 445555666677774


Q ss_pred             c
Q psy12131        181 E  181 (245)
Q Consensus       181 ~  181 (245)
                      .
T Consensus       369 ~  369 (566)
T PHA03269        369 G  369 (566)
T ss_pred             c
Confidence            4

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=81.28  E-value=5.4  Score=24.62  Aligned_cols=27  Identities=7%  Similarity=-0.058  Sum_probs=15.0

Q ss_pred             CCCeeEEEEEeCCCCCceEEEEEEEee
Q psy12131        154 GPDGYRLVWQVDTYSGIIQYLLKFRER  180 (245)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~  180 (245)
                      .++.+.|.|.+.+..|..-...|+++.
T Consensus        16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g   42 (100)
T cd07699          16 KSGKATLVCLINDFYPGFATVQWKVDG   42 (100)
T ss_pred             cCCCcEEEEEEEeEECCCCEEEEEECC
Confidence            456789999995543322223344443

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=81.04  E-value=8.3  Score=22.15  Aligned_cols=22  Identities=18%  Similarity=0.021  Sum_probs=11.0

Q ss_pred             eEEEEEeCCCCCceEEEEEEEe
Q psy12131        158 YRLVWQVDTYSGIIQYLLKFRE  179 (245)
Q Consensus       158 ~~l~~~~~~~~~~~~~~~~~~~  179 (245)
                      ++|.|.+.+.-|..-...|+++
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~   23 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRN   23 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEEC
Confidence            5678888554332223334444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	245
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		2e-10
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		2e-10
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		3e-08
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		5e-08
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		1e-07
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-07
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		4e-07
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		5e-07
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		5e-07
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		6e-06
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		8e-05
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		7e-06
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		6e-05
3mtr_A	215	Crystal Structure Of The Ig5-Fn1 Tandem Of Human Nc		7e-06
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		4e-05
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-05
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		4e-05
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		8e-05
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-04
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-04
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		1e-04
3knb_B	107	Crystal Structure Of The Titin C-Terminus In Comple		1e-04
2wp3_O	109	Crystal Structure Of The Titin M10-Obscurin Like 1		1e-04
3kld_A	384	Ptprg Cntn4 Complex Length = 384		1e-04
2wwk_O	109	Crystal Structure Of The Titin M10-Obscurin Like 1		1e-04
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-04
1f97_A	212	Soluble Part Of The Junction Adhesion Molecule From		1e-04
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		2e-04
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		2e-04
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		2e-04
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		2e-04
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		3e-04
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		3e-04
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		3e-04
2l7j_A	95	Solution Structure Of The Third Immunoglobulin-Like		6e-04
3sku_E	319	Herpes Simplex Virus Glycoprotein D Bound To The Hu		6e-04
2lu7_A	84	Solution Nmr Structure Of Ig Like Domain (1277-1357		9e-04

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 5/146 (3%)
Query: 3   EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 62
           E++  +   SL +  V L  +G Y C A++ IG    K+  +++ Y P+    +   ++ 
Sbjct: 55  EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSW 113
Query: 63  PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS--EKHSLLVRHIKDTDFGNY 120
                 I C+V +NPPA + W RD   +      ++   S   K  L +    D DFG Y
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRY 173
Query: 121 MCQASNNLGSS-QQFI-QLSGIPNIP 144
            C A+N++G+  Q++I  L+ +P+ P
Sbjct: 174 NCTATNHIGTRFQEYILALADVPSSP 199

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 5/146 (3%)
Query: 3   EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 62
           E++  +   SL +  V L  +G Y C A++ IG    K+  +++ Y P+    +   ++ 
Sbjct: 55  EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSW 113
Query: 63  PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS--EKHSLLVRHIKDTDFGNY 120
                 I C+V +NPPA + W RD   +      ++   S   K  L +    D DFG Y
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRY 173
Query: 121 MCQASNNLGSSQQ--FIQLSGIPNIP 144
            C A+N++G+  Q   + L+ +P+ P
Sbjct: 174 NCTATNHIGTRFQEYILALADVPSSP 199

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 12/124 (9%)
Query: 4   IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIHTA 62
           ++L  +  +L L  VT    G Y+C   N +    S   I+NV+Y P + ++   + +  
Sbjct: 335 LQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYR 394
Query: 63  PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
           P +   + C+  +NPPA+  W  DG           ++      L + +I + + G Y C
Sbjct: 395 PGVNLSLSCHAASNPPAQYSWLIDG-----------NIQQHTQELFISNITEKNSGLYTC 443
Query: 123 QASN 126
           QA+N
Sbjct: 444 QANN 447

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 66/160 (41%), Gaps = 8/160 (5%)
Query: 6   LLYNRESLDLDRVTLKLAGLYQCIASNNIG--ESTSKNFIVNVIYPPEVSVEKQWIHTAP 63
            ++N  +L + +      G Y C ASN +G   S++K  +     PP   ++   +  A 
Sbjct: 152 FIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLAL 211
Query: 64  DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
                  C+V    P K+ W +D   I  GG   M +     +L V  +   D G Y C 
Sbjct: 212 GESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 271
Query: 124 ASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQ 163
           ASN  G      QL G+   P F K   +L P   R+V Q
Sbjct: 272 ASNVAGKDSCSAQL-GVQEPPRFIK---KLEPS--RIVKQ 305

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Query: 24  GLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEW 83
           G+Y C A+N +G +      + V   P+++     +     ++A + C    NP   V W
Sbjct: 75  GIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSW 134
Query: 84  FRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
            +  +A+    RI +    E  SL + +++  D G Y C A N+LG++
Sbjct: 135 IKGDSALRENSRIAVL---ESGSLRIHNVQKEDAGQYRCVAKNSLGTA 179

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 11/122 (9%)
Query: 19  TLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-------AEIIC 71
           T +   +Y+C+ASNN+GE  S +  + V+   ++      I   P ++       A ++C
Sbjct: 72  TPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLC 130
Query: 72  NVYANPPAKVEWFRDGTAITLG---GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
               NP  ++ WF+D   +      GRI    S    +L +   +++D G Y C A+N+ 
Sbjct: 131 AASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSA 190
Query: 129 GS 130
           G+
Sbjct: 191 GT 192

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 9/122 (7%)
Query: 23  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE 82
            G Y C A+N  GE   + F+   + P  + ++ +   T  + +  ++C+    P  ++ 
Sbjct: 70  GGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNET--TYENGQVTLVCDAEGEPIPEIT 127
Query: 83  WFR--DGTAITLG-----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI 135
           W R  DG   T G     GRI++       SL ++ +K +D G Y C+A++ +G  Q+ +
Sbjct: 128 WKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSM 187
Query: 136 QL 137
            L
Sbjct: 188 YL 189

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 24  GLYQCIASNNI-GESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII--CNVYANPPAK 80
           G+Y+C       GE   ++ IV V  PP +S+ ++  +   +   E+   C    +P   
Sbjct: 166 GIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA 225
Query: 81  VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG--SSQQFIQL 137
           + WFR+G  I    +  +  S+ +  L VR+I ++D G Y+C+A+N  G    Q F+Q+
Sbjct: 226 ISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 7/119 (5%)
Query: 24  GLYQCIASNNI-GESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII--CNVYANPPAK 80
           G+Y+C       GE   ++ IV V  PP +S+ ++  +   +   E+   C    +P   
Sbjct: 70  GIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPA 129
Query: 81  VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS--QQFIQL 137
           + WFR+G  I    +  +  S+ +  L VR+I ++D G Y+C+A+N  G    Q F+Q+
Sbjct: 130 ISWFRNGKLIEENEKYILKGSNTE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 15/153 (9%)
Query: 3   EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV-------SVE 55
           ++ L+ N  +L + +VT   AG Y C ASN  G+  S +  + V  PP          + 
Sbjct: 53  KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQAPPRFIKKLEPSRIV 111
Query: 56  KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 115
           KQ  HT    R E  C +  +P  KV W++D T I    +  M        L + ++   
Sbjct: 112 KQDEHT----RYE--CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE 165
Query: 116 DFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQK 148
           D G+Y C+A N  GS+     L  +   PVF+K
Sbjct: 166 DSGDYTCEAHNAAGSASSSTSLK-VKEPPVFRK 197

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 71  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
           C+V    P K+ W +D   I  GG   M +     +L V  +   D G Y C ASN  G 
Sbjct: 27  CHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 86
Query: 131 SQQFIQLSGIPNIPVFQK 148
                QL G+   P F K
Sbjct: 87  DSCSAQL-GVQAPPRFIK 103

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 5/148 (3%)
Query: 3   EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV--SVEKQWIH 60
           ++ L+ N  +L + +VT   AG Y C ASN  G+  S +  + V  PP     +E   I 
Sbjct: 53  KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPSRI- 110
Query: 61  TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
              D      C +  +P  KV W++D T I    +  M        L + ++   D G+Y
Sbjct: 111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 170
Query: 121 MCQASNNLGSSQQFIQLSGIPNIPVFQK 148
            C+A N  GS+     L  +   PVF+K
Sbjct: 171 TCEAHNAAGSASSSTSLK-VKEPPVFRK 197

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 71  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
           C+V    P K+ W +D   I  GG   M +     +L V  +   D G Y C ASN  G 
Sbjct: 27  CHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK 86
Query: 131 SQQFIQLSGIPNIPVFQK 148
                QL G+   P F K
Sbjct: 87  DSCSAQL-GVQEPPRFIK 103

>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam Length = 215

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 59  IHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTD 116
           ++T    +  I C V+A P A + WFRDG  +       I ++ +     L V    + D
Sbjct: 28  VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSEND 87
Query: 117 FGNYMCQASNNLG-SSQQFI 135
           FGNY C A N +G  S +FI
Sbjct: 88  FGNYNCTAVNRIGQESLEFI 107

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 17/125 (13%)
Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII- 70
           +L +  V+ +  G Y+C A N+ G  T +  I+       V  + +W+    D  A+I  
Sbjct: 257 TLQIPSVSFEDEGTYECEAENSKGRDTVQGRII-------VQAQPEWLKVISDTEADIGS 309
Query: 71  -----CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
                C     P   V W R+G  +    R+++     + S L       D G Y C A 
Sbjct: 310 NLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLE----DSGMYQCVAE 365
Query: 126 NNLGS 130
           N  G+
Sbjct: 366 NKHGT 370

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Query: 25  LYQCIASNNIGE-STSKNFIV---NVIYP--PEVSVEKQWIHTAPDMRAEIICNVYANPP 78
           +Y+C A+N++GE +TS    V     + P  P + +  Q         A ++C    NP 
Sbjct: 78  IYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAGGNPD 137
Query: 79  AKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
            ++ WF+D   +   T  GRI    S    +L +   +++D G Y C A+N+ G+
Sbjct: 138 PEISWFKDFLPVDPATSNGRIKQLRSG---ALQIESSEESDQGKYECVATNSAGT 189

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 47/124 (37%), Gaps = 17/124 (13%)
Query: 13  LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEI--- 69
           L +  V  +  G Y+C A N  G  T +  I+       +  +  W+    D  A+I   
Sbjct: 259 LHIQNVDFEDEGTYECEAENIKGRDTYQGRII-------IHAQPDWLDVITDTEADIGSD 311
Query: 70  ---ICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
               C     P   V W RDG  +    RI++     + S LV      D G Y C A N
Sbjct: 312 LRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLE----DSGMYQCVAEN 367
Query: 127 NLGS 130
             G+
Sbjct: 368 KHGT 371

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV---SVEKQWIHTAPDMRAE 68
           +L +D VT    GLY C AS+ +    +  F V V   P V   S  +  +      R  
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTF-VRVHEKPFVAFGSGMESLVEATVGERVR 349
Query: 69  IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
           I       PP +++W+++G  +        H     H L +  + + D GNY    +N +
Sbjct: 350 IPAKYLGYPPPEIKWYKNGIPLE-----SNHTIKAGHVLTIMEVSERDTGNYTVILTNPI 404
Query: 129 GSSQQFIQLSGIPNIP 144
              +Q   +S +  +P
Sbjct: 405 SKEKQSHVVSLVVYVP 420

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 25  LYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-------AEIICNVYANP 77
           +Y+C+A N++GE T  +  + V+   ++      I   P ++       A ++C    NP
Sbjct: 78  VYECVAQNSVGEITV-HAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 78  PAKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
             ++ WF+D   +      GRI    S    +L +   ++TD G Y C A+N+ G
Sbjct: 137 DPEITWFKDFLPVDPSASNGRIKQLRSG---ALQIESSEETDQGKYECVATNSAG 188

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 25  LYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-------AEIICNVYANP 77
           +Y+C+A N++GE T  +  + V+   ++      I   P ++       A ++C    NP
Sbjct: 78  VYECVAQNSVGEITV-HAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 78  PAKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
             ++ WF+D   +      GRI    S    +L +   ++TD G Y C A+N+ G
Sbjct: 137 DPEITWFKDFLPVDPSASNGRIKQLRSG---ALQIESSEETDQGKYECVATNSAG 188

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 64  DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT-DFGNYMC 122
           + + ++ C V  NP   + W  +GT + +G  +D   S    SLL+ +   T D G Y C
Sbjct: 22  EKKVKLSCEVKGNPKPHIRWKLNGTDVDIG--MDFRYSVVDGSLLINNPNKTQDAGTYQC 79
Query: 123 QASNNLG---SSQQFIQLSGIPNIPVFQKS--SRRLGPDGYRLVWQVDTYSGIIQYLLKF 177
            A+N+ G   S +  +Q + + N     +S  S R G  G  L+     +SG + Y   F
Sbjct: 80  IATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRG-QGMVLLCGPPPHSGELSYAWIF 138
Query: 178 REREELTPWRNIVIPSDGSL 197
            E       R  V    G+L
Sbjct: 139 NEYPSYQDNRRFVSQETGNL 158

>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 107

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 67  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
           AE+ C V   PP  V W + G  +    R+       +H LL+     TD G Y+C+A N
Sbjct: 31  AELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 90

>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 109

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 67  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
           AE+ C V   PP  V W + G  +    R+       +H LL+     TD G Y+C+A N
Sbjct: 32  AELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 9/140 (6%)
Query: 64  DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT-DFGNYMC 122
           + + ++ C V  NP   + W  +GT + +G  +D   S    SLL+ +   T D G Y C
Sbjct: 23  EKKVKLSCEVKGNPKPHIRWKLNGTDVDIG--MDFRYSVVDGSLLINNPNKTQDAGTYQC 80
Query: 123 QASNNLG---SSQQFIQLSGIPNIPVFQKS--SRRLGPDGYRLVWQVDTYSGIIQYLLKF 177
            A+N+ G   S +  +Q + + N     +S  S R G  G  L+     +SG + Y   F
Sbjct: 81  IATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRG-QGMVLLCGPPPHSGELSYAWIF 139
Query: 178 REREELTPWRNIVIPSDGSL 197
            E       R  V    G+L
Sbjct: 140 NEYPSYQDNRRFVSQETGNL 159

>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r Mutant Complex Length = 109

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 67  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
           AE+ C V   PP  V W + G  +    R+       +H LL+     TD G Y+C+A N
Sbjct: 32  AELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 25  LYQCIASNNIGESTSKNFIV----NVIYP--PEVSVEKQWIHTAPDMRAEIICNVYANPP 78
           +Y+C+A N  GE T    +     + + P  P + +  Q         A ++C    NP 
Sbjct: 78  IYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTATMLCAASGNPD 137
Query: 79  AKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
            ++ WF+D   +   T  GRI    S     L +   ++TD G Y C ASN+ G
Sbjct: 138 PEITWFKDFLPVDPSTSNGRIKQLRSG---GLQIESSEETDQGKYECVASNSAG 188

>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse Length = 212

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Query: 6   LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFI-VNVIYPPEVSVEKQWIHTAPD 64
           + ++   +    VT K  G Y C+ S   G++  +  I + V+ PP              
Sbjct: 60  VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIG 119
Query: 65  MRAEIICNVY-ANPPAKVEWFRDG----TAITLGGRIDMH----VSSEKHSLLVRHIKDT 115
            RA + C+ +  +PP++  WF+DG    TA     R  M+    +  +   L+   +   
Sbjct: 120 NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF 179
Query: 116 DFGNYMCQASNNLGSSQQ 133
           D G Y CQA N  G++ +
Sbjct: 180 DSGEYYCQAQNGYGTAMR 197

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 68  EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
           E+ C    NPP ++ WF+D   +     I +   +   +L +R ++  D G Y CQA + 
Sbjct: 29  EVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTCQACSV 86
Query: 128 LGSSQ 132
           LG ++
Sbjct: 87  LGCAK 91

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 25  LYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-------AEIICNVYANP 77
           +Y+C+A N++GE T  +  + V+   ++      I   P ++       A ++C    NP
Sbjct: 78  VYECVAQNSVGEITV-HAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNP 136
Query: 78  PAKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
             ++ WF+D   +      GRI    S    +L +   ++TD G Y C A+N+ G
Sbjct: 137 DPEITWFKDFLPVDPSASNGRIKQLRSG---ALQIESSEETDQGKYECVATNSAG 188

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 23/233 (9%)
Query: 13  LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK--QWIHTAPDMRAEII 70
           L +  VT   A +YQ  A+N  G S S    + V  P ++ + K  + +     +R E++
Sbjct: 64  LIIASVTDDDATVYQVRATNQ-GGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 71  C---NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRH-IKDTDFGNYMCQASN 126
                    P   + W +    I   G   + V+    SL+  + ++  D G Y+  A N
Sbjct: 123 SIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182
Query: 127 NLGSSQQFIQL--SGIPNIPVFQKSSRRLGPDGYRLVW---QVDTYSGIIQYLLKFRERE 181
             G  Q+ ++L  + +P+ P   K S  +  D   L W     D  S I  Y++   E+ 
Sbjct: 183 RFGIDQKTVELDVADVPDPPRGVKVSD-VSRDSVNLTWTEPASDGGSKITNYIV---EKC 238
Query: 182 ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSK 234
             T  R + +       G      Y +  L   T Y+  V+A+N+FG S+PS+
Sbjct: 239 ATTAERWLRV-------GQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSE 284

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Query: 3   EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKN--FIVNVIYPPEVSVEKQWIH 60
           +I     R  L +  VT   +G Y   A+N  G++TS     +     PP      Q + 
Sbjct: 55  QISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMT 114
Query: 61  TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFG 118
                +  +   V   P   V+++RDG  I     +D  +S E   +SLL+      D G
Sbjct: 115 VRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQ--SSLDFQISQEGDLYSLLIAEAYPEDSG 172
Query: 119 NYMCQASNNLGSSQQFIQL 137
            Y   A+N++G +    +L
Sbjct: 173 TYSVNATNSVGRATSTAEL 191

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Query: 3   EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKN--FIVNVIYPPEVSVEKQWIH 60
           +I     R  L +  VT   +G Y   A+N  G++TS     +     PP      Q + 
Sbjct: 55  QISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMT 114
Query: 61  TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFG 118
                +  +   V   P   V+++RDG  I     +D  +S E   +SLL+      D G
Sbjct: 115 VRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQ--SSLDFQISQEGDLYSLLIAEAYPEDSG 172
Query: 119 NYMCQASNNLGSSQQFIQL 137
            Y   A+N++G +    +L
Sbjct: 173 TYSVNATNSVGRATSTAEL 191

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 14/116 (12%)
Query: 25  LYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-------AEIICNVYANP 77
           +Y+C A+N++GE  + +  ++V+   ++      I   P ++       A ++C    NP
Sbjct: 79  IYECTATNSLGE-INTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAGGNP 137
Query: 78  PAKVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
             ++ WF+D   +      GRI    S    +L +   +++D G Y C A+N+ G+
Sbjct: 138 DPEISWFKDFLPVDPAASNGRIKQLRSG---ALQIESSEESDQGKYECVATNSAGT 190

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV---SVEKQWIHTAPDMRAE 68
           +L +D VT    GLY C AS+ +    +  F V V   P V   S  +  +      R  
Sbjct: 161 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTF-VRVHEKPFVAFGSGMESLVEATVGERVR 219
Query: 69  IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
           I       PP +++W+++G  +        H     H L +  + + D GNY    +N +
Sbjct: 220 IPAKYLGYPPPEIKWYKNGIPLE-----SNHTIKAGHVLTIMEVSERDTGNYTVILTNPI 274
Query: 129 GSSQQFIQLSGIPNIP 144
              +Q   +S +  +P
Sbjct: 275 SKEKQSHVVSLVVYVP 290

>pdb|2L7J|A Chain A, Solution Structure Of The Third Immunoglobulin-Like Domain Of Nectin-1 Length = 95

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 13/100 (13%)
Query: 44  VNVIYPPEVSVEK---QWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMH 99
           +NV Y PEV++E     W     D++  + C   ANPPA +  W       TL G +   
Sbjct: 1   LNVQYEPEVTIEGFDGNWYLQRTDVK--LTCKADANPPATEYHW------TTLNGSLPKG 52
Query: 100 VSSEKHSLLVRH-IKDTDFGNYMCQASNNLGSSQQFIQLS 138
           V ++  +L  R  I  +  G Y+C+A+N +G+    ++++
Sbjct: 53  VEAQNRTLFFRGPITYSLAGTYICEATNPIGTRSGQVEVN 92

>pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human Receptor Nectin-1 Length = 319

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 40  KNFIVNVIYPPEVSVEK---QWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGR 95
           ++  +NV Y PEV++E     W     D++  + C   ANPPA +  W       TL G 
Sbjct: 207 ESLTLNVQYEPEVTIEGFDGNWYLQRMDVK--LTCKADANPPATEYHW------TTLNGS 258
Query: 96  IDMHVSSEKHSLLVRH-IKDTDFGNYMCQASNNLG--SSQQFIQLSGIPNIP 144
           +   V ++  +L  +  I  +  G Y+C+A+N +G  S Q  + ++  P  P
Sbjct: 259 LPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEFPYTP 310

>pdb|2LU7|A Chain A, Solution Nmr Structure Of Ig Like Domain (1277-1357) Of Obscurin-Like Protein 1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr8578d Length = 84

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 59  IHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 118
           + + P    E++ ++ + P   V W++DG  +   GR+ +  +  +  L V+  +  D G
Sbjct: 6   VRSTPGGDLELVVHL-SGPGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAG 64
Query: 119 NYMCQASNN 127
            Y+C A  +
Sbjct: 65  EYLCDAPQD 73

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-34
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-33
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-15
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	9e-12
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-30
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-12
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-30
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-10
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	8e-28
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	9e-24
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-23
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-22
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-22
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	8e-16
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-27
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-26
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	9e-15
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-27
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-20
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-18
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-15
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-15
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-13
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-26
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	6e-07
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-26
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-10
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-25
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	9e-22
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-09
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-25
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-13
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-25
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-12
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-25
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	7e-13
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	4e-25
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	5e-09
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	6e-25
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	5e-22
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-12
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	9e-25
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-22
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-18
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-10
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-24
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-21
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	7e-11
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	5e-04
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-24
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-06
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-24
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-13
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	4e-24
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	6e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-24
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-22
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-21
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-17
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-05
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-23
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-14
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	7e-05
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	7e-23
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	8e-09
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-23
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-22
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-20
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-20
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-18
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-14
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-04
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-23
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-15
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-14
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-11
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-22
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	3e-17
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	7e-15
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-09
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-22
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-17
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	6e-15
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-10
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-22
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	6e-07
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-22
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-17
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	9e-17
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	7e-11
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-22
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	7e-09
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-22
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-17
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-04
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-22
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-10
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-21
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-07
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	3e-21
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	3e-14
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	4e-21
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-10
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-05
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	5e-21
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-08
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	8e-04
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-21
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	8e-20
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-17
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-15
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	7e-09
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	8e-21
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-20
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-19
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-16
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-13
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-20
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	7e-08
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	3e-04
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-20
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	9e-14
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	5e-06
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	5e-04
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-20
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	9e-10
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-04
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-20
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	7e-13
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-20
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-16
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-14
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-06
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-20
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-17
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-10
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-20
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-19
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-15
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	7e-14
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-05
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	9e-20
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-18
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-12
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-19
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-08
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-19
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	5e-15
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	5e-19
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-15
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-04
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	6e-19
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	7e-19
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-04
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	6e-19
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-18
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-13
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	9e-18
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	8e-09
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-17
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	5e-12
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	4e-17
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	8e-17
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-11
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	9e-17
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	8e-05
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	1e-16
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-08
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	7e-06
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-16
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-16
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-16
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-16
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-09
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-05
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	3e-16
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-08
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	5e-16
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-04
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-16
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	5e-15
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-10
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	7e-16
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	9e-16
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-08
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	5e-04
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-15
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-10
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-08
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	9e-07
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-05
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-15
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	3e-15
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	4e-15
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	6e-04
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-15
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-12
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-07
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	6e-15
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-13
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-10
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	6e-15
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	8e-08
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-05
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	7e-15
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	4e-11
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-07
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	7e-06
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	8e-15
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	7e-04
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	9e-15
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-14
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-14
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-14
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	3e-14
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	3e-14
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	4e-14
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-14
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	4e-12
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-08
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	5e-14
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-09
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-04
2ens_A	96	Advanced glycosylation END product-specific recept	6e-14
2ens_A	96	Advanced glycosylation END product-specific recept	7e-05
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	7e-14
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	8e-14
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	1e-13
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	1e-13
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-05
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	1e-13
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	2e-13
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	3e-13
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	8e-05
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	3e-13
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	5e-05
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-13
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	3e-13
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-13
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-07
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	5e-05
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	4e-13
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	5e-13
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	7e-13
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	8e-13
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	9e-13
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	9e-13
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	2e-12
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-12
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-12
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-12
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-12
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-08
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-12
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-12
1he7_A	126	High affinity nerve growth factor receptor; transf	6e-12
1he7_A	126	High affinity nerve growth factor receptor; transf	7e-04
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	7e-12
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	6e-05
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	7e-12
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	8e-12
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-11
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	2e-11
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-11
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-11
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-06
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	3e-11
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	3e-11
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-11
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-08
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-06
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	3e-11
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	5e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-11
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	5e-11
2ha1_A	201	Fibronectin; beta sandwich, protein-protein comple	1e-04
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	6e-11
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	6e-11
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	6e-11
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-04
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	7e-11
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	7e-11
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	2e-10
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-10
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-10
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-09
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	6e-08
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	9e-07
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-10
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	8e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	1e-09
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	2e-09
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-09
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	6e-09
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-08
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	8e-09
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	1e-08
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	1e-08
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	2e-05
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-08
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-05
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	2e-08
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	2e-08
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	3e-08
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	4e-08
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	2e-07
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	6e-04
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	4e-08
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	4e-08
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	6e-08
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	7e-08
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	8e-08
2crm_A	120	Fibronectin type-III domain containing protein 3A;	8e-08
1wfo_A	130	Sidekick 2; FN3, cell adhesion, structural genomic	9e-08
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	9e-08
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	1e-07
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	2e-05
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-04
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	2e-07
2dmk_A	127	Midline 2 isoform 2; midline defect 2, tripartite	2e-07
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	2e-07
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	2e-07
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-05
2e3v_A	122	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	4e-07
3tes_A	98	Tencon; fibronectin type III domain, FN3, consensu	4e-07
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	5e-07
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	5e-07
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	5e-07
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	2e-04
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	6e-07
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	1e-04
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	6e-07
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	6e-07
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	7e-07
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	7e-07
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	7e-07
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	7e-07
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	8e-07
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-06
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	1e-06
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	1e-06
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	2e-06
3b83_A	100	Ten-D3; beta sheet, computational redesigned prote	2e-06
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	2e-06
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	2e-06
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	3e-05
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	5e-04
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	2e-06
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	2e-05
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	1e-04
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	2e-04
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	2e-06
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	3e-06
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	5e-05
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	2e-04
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	3e-06
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	4e-06
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	3e-06
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	3e-06
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	3e-06
1x5h_A	132	Neogenin; RGM binding, fibronectin type III domain	3e-06
3t04_D	103	Monobody 7C12; engineered binding protein, antibod	4e-06
2edx_A	134	Protein tyrosine phosphatase, receptor type, F; LA	4e-06
2rb8_A	104	Tenascin; beta sheet,loop design, alternative spli	5e-06
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	5e-06
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	6e-06
1wfn_A	119	Sidekick 2; FN3, cell adhesion, structural genomic	6e-06
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	6e-06
1oww_A	98	FN, fibronectin first type III module, CIG; fibron	6e-06
3lpw_A	197	A77-A78 domain from titin; intracellular FNIII-tan	7e-06
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	7e-06
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	1e-05
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	2e-05
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	9e-05
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	8e-06
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	8e-06
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	1e-04
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	9e-06
3k2m_C	101	Monobody HA4; engineered binding protein, antibody	9e-06
1x5g_A	116	Neogenin; RGM binding, fibronectin type III domain	1e-05
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	1e-05
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	1e-05
1x5a_A	107	Ephrin type-A receptor 1; tyrosine-protein kinase	2e-05
2edb_A	116	Netrin receptor DCC; tumor suppressor protein DCC,	2e-05
3teu_A	98	Fibcon; FN3 domain, fibronectin TPYE III domain, c	2e-05
2cum_A	105	Tenascin-X; hexabrachion-like, fibronectin type II	2e-05
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	2e-05
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	2e-05
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	8e-05
1uen_A	125	KIAA0343 protein; immunoglobulin-like beta-sandwic	3e-05
1wk0_A	137	KIAA0970 protein; fibronectin type III domain, str	3e-05
3v6o_A	206	Leptin receptor; receptor-antibody complex, cytoki	4e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	4e-05
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	5e-05
1cd9_B	215	G-CSF-R, protein (G-CSF receptor); class1 cytokine	5e-05
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	6e-05
2edy_A	103	Receptor-type tyrosine-protein phosphatase F; LAR	6e-05
2ekj_A	105	Collagen alpha-1(XX) chain; KIAA1510, structural g	7e-05
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	7e-05
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	8e-05
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	2e-04
3qht_C	97	Monobody YSMB-1; fibronectin type III, yeast small	9e-05
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	9e-05
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	1e-04
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	1e-04
2crz_A	110	Fibronectin type-III domain containing protein 3A;	1e-04
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	1e-04
2ocf_D	121	Fibronectin; estrogen receptor, LBD, monobody, est	1e-04
1va9_A	122	DOWN syndrome cell adhesion molecule like- protein	1e-04
2ee3_A	108	Collagen alpha-1(XX) chain; KIAA1510, structural g	2e-04
3s98_A	306	Interferon alpha/beta receptor 1; human, type I in	2e-04
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	2e-04
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	2e-04
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	2e-04
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	2e-04
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	2e-04
2dlh_A	121	Receptor-type tyrosine-protein phosphatase delta;	2e-04
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	2e-04
1x5i_A	126	Neogenin; RGM binding, fibronectin type III domain	2e-04
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	2e-04
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	2e-04
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	3e-04
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	3e-04
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	3e-04
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	4e-04
2erj_C	247	Cytokine receptor common gamma chain; immune syste	4e-04
1q38_A	89	Fibronectin; amyloid fibril, anastellin, extracell	5e-04
2gys_A	419	Cytokine receptor common beta chain; dimer of inte	7e-04
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	7e-04
3n06_B	210	PRL-R, prolactin receptor; PH dependence, hematopo	7e-04
2b5i_C	199	Cytokine receptor common gamma chain; four-helix b	7e-04
2cui_A	112	Tenascin-X; fibronectin type III domain, extracell	9e-04
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	9e-04

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score =  121 bits (306), Expect = 2e-34
 Identities = 48/228 (21%), Positives = 79/228 (34%), Gaps = 28/228 (12%)

Query: 24  GLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEW 83
             Y   +S  +          + +Y P++      ++T    +  I C V+A P A + W
Sbjct: 1   ATYAAASSALVPR-------GSHMYAPKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISW 52

Query: 84  FRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--- 138
           FRDG  +       I ++ +     L V    + DFGNY C A N +G       L    
Sbjct: 53  FRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD 112

Query: 139 --GIPNIPVFQKSSRRLGPDGYRLVW---QVDTYSGIIQYLLKFREREELTPWRNIVIPS 193
               P+I   +  S        ++ +   +      I++Y  ++R   E           
Sbjct: 113 TPSSPSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 167

Query: 194 DGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
           +             I GL+  T Y   + A N  G    S A  F T+
Sbjct: 168 EA-----SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 210

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  123 bits (310), Expect = 3e-33
 Identities = 57/253 (22%), Positives = 99/253 (39%), Gaps = 26/253 (10%)

Query: 3   EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 62
           E++  +   SL +  V L  +G Y C A++ IG    K+  +++ Y P+    +   ++ 
Sbjct: 55  EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSW 113

Query: 63  PDMRAEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNY 120
                 I C+V +NPPA + W RD   +       +  + +  K  L +    D DFG Y
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRY 173

Query: 121 MCQASNNLGSSQQFIQLS--GIPNIP----VFQKSSRRLGPDGYRLVWQVDTYSG---II 171
            C A+N++G+  Q   L+   +P+ P    + + S         ++ +      G   I 
Sbjct: 174 NCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTA-----KVSFNKPDSHGGVPIH 228

Query: 172 QYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR 231
            Y +  +E      W+ +                  +  L+  T YE  V A N  G   
Sbjct: 229 HYQVDVKEVASEI-WKIVRSHGV--------QTMVVLNNLEPNTTYEIRVAAVNGKGQGD 279

Query: 232 PSKAYVFATEGAE 244
            SK  +F T    
Sbjct: 280 YSKIEIFQTLPVR 292

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 73.7 bits (181), Expect = 2e-15
 Identities = 36/246 (14%), Positives = 78/246 (31%), Gaps = 50/246 (20%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP------------EVSVEKQWI 59
            L++   +    G Y C A+N+IG    + +I+ +   P            + + +  + 
Sbjct: 159 ILEIAPTSDNDFGRYNCTATNHIGTRFQE-YILALADVPSSPYGVKIIELSQTTAKVSFN 217

Query: 60  HTAPDMRAEIIC-NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 118
                    I    V     A   W              +     +  +++ +++     
Sbjct: 218 KPDSHGGVPIHHYQVDVKEVASEIWKI------------VRSHGVQTMVVLNNLEPNTTY 265

Query: 119 NYMCQASNNLGSSQ---------QFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQV--DTY 167
                A N  G              ++    P+I       +      ++L      D  
Sbjct: 266 EIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHG-----QPSSGKSFKLSITKQDDGG 320

Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
           + I++Y++K+R +++   W    +  +             +  LQ    YE  + A NR 
Sbjct: 321 APILEYIVKYRSKDKEDQWLEKKVQGN--------KDHIILEHLQWTMGYEVQITAANRL 372

Query: 228 GWSRPS 233
           G+S P+
Sbjct: 373 GYSEPT 378

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 62.9 bits (153), Expect = 9e-12
 Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 14/100 (14%)

Query: 46  VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL-------GGRIDM 98
           +I     +  +       + +  ++C+    P  ++ W R     T         GRI++
Sbjct: 4   IIQLKNETTYE-------NGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEV 56

Query: 99  HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
                  SL ++ +K +D G Y C+A++ +G  Q+ + L 
Sbjct: 57  KGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 96

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  114 bits (286), Expect = 2e-30
 Identities = 54/238 (22%), Positives = 86/238 (36%), Gaps = 29/238 (12%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNV---IYPPEVSVEKQWIHTAPDMRA 67
            L +  VT   A +YQ  A+N  G  S + +  V V   I+ P+       +H       
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122

Query: 68  EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL-VRHIKDTDFGNYMCQASN 126
            I       P   + W +    I   G   + V+    SL+    ++  D G Y+  A N
Sbjct: 123 SIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182

Query: 127 NLGSSQQFIQLS--GIPNIP----VFQKSSRRLGPDGYRLVWQVDTYSG---IIQYLLKF 177
             G  Q+ ++L    +P+ P    V   S   +      L W      G   I  Y+++ 
Sbjct: 183 RFGIDQKTVELDVADVPDPPRGVKVSDVSRDSV-----NLTWTEPASDGGSKITNYIVEK 237

Query: 178 REREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKA 235
                   W            G      Y +  L   T Y+  V+A+N+FG S+PS+ 
Sbjct: 238 CATTAER-WLR---------VGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEP 285

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 64.8 bits (158), Expect = 2e-12
 Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVS-SEKHS 106
            P    E + ++      A ++C V  +P   V+W+R G  I   G +  +       H 
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
           L++  + D D   Y  +A+N  GS      L 
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGSVSGTASLE 95

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  110 bits (276), Expect = 4e-30
 Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 1   EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH 60
           +    +  N + L +  V     G+Y C A+N +G +      + V   P+++     + 
Sbjct: 52  DTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVK 111

Query: 61  TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
               ++A + C    NP   V W +  +A+    RI +    E  SL + +++  D G Y
Sbjct: 112 IIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVL---ESGSLRIHNVQKEDAGQY 168

Query: 121 MCQASNNLGSSQ-QFIQLSGIPNIPVF 146
            C A N+LG++  + ++L     + VF
Sbjct: 169 RCVAKNSLGTAYSKLVKL----EVEVF 191

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
            P ++   + +    +  A  +C V + P  ++ W R+   I L       +      L 
Sbjct: 7   APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDT-RYSIRENGQLLT 65

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQ 133
           +  ++D+D G Y C A+N +G + +
Sbjct: 66  ILSVEDSDDGIYCCTANNGVGGAVE 90

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  109 bits (275), Expect = 8e-28
 Identities = 29/136 (21%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 3   EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 62
            +  + +   L++  ++++ +G Y C A N  G ++S +  + V  PP    +   + T 
Sbjct: 339 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS-STSLKVKEPPVFRKKPHPVETL 397

Query: 63  PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
                 + C +   PP +V W +D   +  G +  +   +   S+ + ++   D G Y C
Sbjct: 398 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC 457

Query: 123 QASNNLGSSQQFIQLS 138
           +ASN++GS      ++
Sbjct: 458 KASNDVGSDTCVGSIT 473

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 98.3 bits (245), Expect = 9e-24
 Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 3/147 (2%)

Query: 3   EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 62
           ++ L+ N  +L + +VT   AG Y C ASN  G+ +     + V  PP    + +     
Sbjct: 245 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS-AQLGVQEPPRFIKKLEPSRIV 303

Query: 63  -PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 121
             D      C +  +P  KV W++D T I    +  M        L + ++   D G+Y 
Sbjct: 304 KQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYT 363

Query: 122 CQASNNLGSSQQFIQLSGIPNIPVFQK 148
           C+A N  GS+     L  +   PVF+K
Sbjct: 364 CEAHNAAGSASSSTSLK-VKEPPVFRK 389

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 97.2 bits (242), Expect = 2e-23
 Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 6/154 (3%)

Query: 3   EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWI 59
           +++   N  SL +++V     G Y C A N++G   S + ++ +     PP  + + + +
Sbjct: 53  KMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVAS-SAVLVIKERKLPPSFARKLKDV 111

Query: 60  HTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 119
           H          C +  + P +V W++DG  +     +         +L +     +  G 
Sbjct: 112 HETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQ 171

Query: 120 YMCQASNNLGSSQQFIQLS--GIPNIPVFQKSSR 151
           Y C ASN LG++    +L+       P F     
Sbjct: 172 YNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPV 205

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 94.5 bits (235), Expect = 2e-22
 Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 2/131 (1%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 68
              S+ +  V     G YQC ASN++G   +    + +  PP    +   I T      +
Sbjct: 438 FLTSIHILNVDSADIGEYQCKASNDVGS-DTCVGSITLKAPPRFVKKLSDISTVVGEEVQ 496

Query: 69  IICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
           +   +    P  V WF+D   I      I +  S    +L     +  + G Y CQ  N 
Sbjct: 497 LQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNE 556

Query: 128 LGSSQQFIQLS 138
            G+ + F  LS
Sbjct: 557 AGTQECFATLS 567

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 92.9 bits (231), Expect = 6e-22
 Identities = 35/139 (25%), Positives = 56/139 (40%), Gaps = 4/139 (2%)

Query: 3   EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI---YPPEVSVEKQWI 59
           +   ++N  +L + +      G Y C ASN +G ++S +  + +     PP   ++   +
Sbjct: 149 QTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASS-SAKLTLSEHEVPPFFDLKPVSV 207

Query: 60  HTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGN 119
             A        C+V    P K+ W +D   I  GG   M +     +L V  +   D G 
Sbjct: 208 DLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQ 267

Query: 120 YMCQASNNLGSSQQFIQLS 138
           Y C ASN  G      QL 
Sbjct: 268 YTCYASNVAGKDSCSAQLG 286

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 75.2 bits (185), Expect = 8e-16
 Identities = 21/103 (20%), Positives = 42/103 (40%), Gaps = 2/103 (1%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
           PP      + +  A      + C V   P  ++ W+++ T +       M   +   SL+
Sbjct: 5   PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64

Query: 109 VRHIKDTDFGNYMCQASNNLG--SSQQFIQLSGIPNIPVFQKS 149
           +  +  +D G Y C+A N++G  +S   + +      P F + 
Sbjct: 65  INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARK 107

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  105 bits (265), Expect = 1e-27
 Identities = 29/136 (21%), Positives = 62/136 (45%), Gaps = 1/136 (0%)

Query: 3   EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 62
            +  + +   L++  ++++ +G Y C A N  G ++S +  + V  PP    +   + T 
Sbjct: 147 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS-STSLKVKEPPVFRKKPHPVETL 205

Query: 63  PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
                 + C +   PP +V W +D   +  G +  +   +   S+ + ++   D G Y C
Sbjct: 206 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC 265

Query: 123 QASNNLGSSQQFIQLS 138
           +ASN++GS      ++
Sbjct: 266 KASNDVGSYTCVGSIT 281

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  102 bits (256), Expect = 3e-26
 Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 2/137 (1%)

Query: 3   EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 62
           ++ L+ N  +L + +VT   AG Y C ASN  G+  S +  + V  PP    + +     
Sbjct: 53  KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPPRFIKKLEPSRIV 111

Query: 63  -PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 121
             D      C +  +P  KV W++D T I    +  M        L + ++   D G+Y 
Sbjct: 112 KQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYT 171

Query: 122 CQASNNLGSSQQFIQLS 138
           C+A N  GS+     L 
Sbjct: 172 CEAHNAAGSASSSTSLK 188

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 70.9 bits (174), Expect = 9e-15
 Identities = 25/90 (27%), Positives = 34/90 (37%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
           PP   ++   +  A        C+V    P K+ W +D   I  GG   M +     +L 
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLT 64

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
           V  +   D G Y C ASN  G      QL 
Sbjct: 65  VLKVTKGDAGQYTCYASNVAGKDSCSAQLG 94

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  107 bits (268), Expect = 8e-27
 Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 7/142 (4%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 68
            ++L   +L+  G Y C+A +   +      +   V     P ++   +   T+     E
Sbjct: 626 IMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIE 685

Query: 69  IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
           + C    NPP ++ WF+D   +     I   +     +L +R ++  D G Y CQA + L
Sbjct: 686 VSCTASGNPPPQIMWFKDNETLVEDSGI--VLKDGNRNLTIRRVRKEDEGLYTCQACSVL 743

Query: 129 GSSQQFIQLS--GIPNIPVFQK 148
           G ++        G       ++
Sbjct: 744 GCAKVEAFFIIEGAQEKTNLER 765

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 87.9 bits (217), Expect = 5e-20
 Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 9/130 (6%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQW---IHTAPDMRAE 68
           +L +D VT    GLY C AS+ +      +  V V   P V+        +      R  
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEKPFVAFGSGMESLVEATVGERVR 349

Query: 69  IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
           I       PP +++W+++G  +     I        H L +  + + D GNY    +N +
Sbjct: 350 IPAKYLGYPPPEIKWYKNGIPLESNHTI-----KAGHVLTIMEVSERDTGNYTVILTNPI 404

Query: 129 GSSQQFIQLS 138
              +Q   +S
Sbjct: 405 SKEKQSHVVS 414

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 82.5 bits (203), Expect = 3e-18
 Identities = 20/150 (13%), Positives = 51/150 (34%), Gaps = 22/150 (14%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 68
           N+    L      ++ LY+C A N +G    +    +V   PE++++   +         
Sbjct: 511 NKTVSTLVIQAANVSALYKCEAVNKVGRG-ERVISFHVTRGPEITLQPD-MQPTEQESVS 568

Query: 69  IICNVYANPPAKVEWFRDGTAI--------------------TLGGRIDMHVSSEKHSLL 108
           + C    +    + W++ G                        L   +  + +++   + 
Sbjct: 569 LWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIME 628

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
           +++    D G+Y+C A +     +  +   
Sbjct: 629 LKNASLQDQGDYVCLAQDRKTKKRHCVVRQ 658

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 74.0 bits (181), Expect = 2e-15
 Identities = 23/158 (14%), Positives = 50/158 (31%), Gaps = 15/158 (9%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWIHTAPDM 65
           +++   +    +  AG+  C A  N     S  +IV V+       V      I  +   
Sbjct: 181 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGE 240

Query: 66  RAEIICNVYANPPAKVE--WFRDGTAITLGGRIDMHVSSEKHS--------LLVRHIKDT 115
           +  + C         ++  W    +       ++  + ++  S        L +  +  +
Sbjct: 241 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 300

Query: 116 DFGNYMCQASNNLGSSQQFIQLS--GIPNIPVFQKSSR 151
           D G Y C AS+ L + +    +     P +        
Sbjct: 301 DQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMES 338

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 73.3 bits (179), Expect = 4e-15
 Identities = 26/165 (15%), Positives = 45/165 (27%), Gaps = 38/165 (23%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIYPPEV---SVEKQWIHTAPDMRA 67
            L +  V+ +  G Y  I +N I +   S    + V  PP++   S+             
Sbjct: 382 VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQ 441

Query: 68  EIICNVYANP-PAKVEWFRDGTAITL---------------------------------G 93
            + C VYA P P  + W+                                          
Sbjct: 442 TLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNK 501

Query: 94  GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
            +  +     K    +          Y C+A N +G  ++ I   
Sbjct: 502 NQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFH 546

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 69.0 bits (168), Expect = 1e-13
 Identities = 26/149 (17%), Positives = 44/149 (29%), Gaps = 11/149 (7%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ----WIHTAPDMRA 67
           +L + +V     G Y+C        S    ++ +   P   SV  Q    +I    +   
Sbjct: 87  TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTV 146

Query: 68  EIICNVYANPPAKV--EWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
            I C    +         + +   +  G RI       K    +     +  G   C+A 
Sbjct: 147 VIPCLGSISNLNVSLCARYPEKRFVPDGNRI---SWDSKKGFTIPSYMISYAGMVFCEAK 203

Query: 126 NNLGS--SQQFIQLSGIPNIPVFQKSSRR 152
            N  S  S  +I +     I     S   
Sbjct: 204 INDESYQSIMYIVVVVGYRIYDVVLSPSH 232

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 67.1 bits (163), Expect = 5e-13
 Identities = 15/130 (11%), Positives = 37/130 (28%), Gaps = 7/130 (5%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE 82
             L+ C+ +           +      P +S++K  +    +   +I C           
Sbjct: 9   VALWLCVETRAASVGLPSVSLD----LPRLSIQKDILTIKANTTLQITCR--GQRDLDWL 62

Query: 83  WFRDGTAITLGGRIDMHVSSEKHS-LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIP 141
           W  + +       +           L +  +   D G Y C       +S  ++ +    
Sbjct: 63  WPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYR 122

Query: 142 NIPVFQKSSR 151
           +  +   S +
Sbjct: 123 SPFIASVSDQ 132

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  101 bits (253), Expect = 1e-26
 Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 9/136 (6%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFI-VNVIYPPEVSVEKQWIHTAPDMRAEII 70
            +    VT +  G Y C+ S   G S  +  + + V+ PP               RA + 
Sbjct: 69  GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLT 128

Query: 71  CNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-------SLLVRHIKDTDFGNYMC 122
           C+    +PP++  WF+DG  +    +     S+  +        L+   +  +D G Y C
Sbjct: 129 CSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSC 188

Query: 123 QASNNLGSSQQFIQLS 138
           +A N  G+      + 
Sbjct: 189 EARNGYGTPMTSNAVR 204

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 47.6 bits (113), Expect = 6e-07
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 12/114 (10%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAIT--------LGGRIDMHV 100
              V   +  +    +   ++ C        +VEW  D    T        +    +  V
Sbjct: 4   SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63

Query: 101 SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI----PNIPVFQKSS 150
           +     +  + +   D G Y C  S   G+S   +++  I    P+ P     S
Sbjct: 64  TFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPS 117

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  100 bits (250), Expect = 2e-26
 Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 5/130 (3%)

Query: 12  SLDLDRVTLKLAGLYQCIASNN-IGESTSKNFIVNVIYPPEVSVEKQWIHT--APDMRAE 68
           +L +  +     G+Y+C       GE   ++ IV V  PP +S+ ++  +          
Sbjct: 58  NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 117

Query: 69  IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
             C    +P   + WFR+G  I    +    +      L VR+I ++D G Y+C+A+N  
Sbjct: 118 FSCRASGSPEPAISWFRNGKLIEENEKY--ILKGSNTELTVRNIINSDGGPYVCRATNKA 175

Query: 129 GSSQQFIQLS 138
           G  ++   L 
Sbjct: 176 GEDEKQAFLQ 185

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 56.3 bits (136), Expect = 5e-10
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 1/68 (1%)

Query: 67  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
           AE++C V ++P   V W      +T        + +  ++L + +I  +D G Y C+   
Sbjct: 20  AEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRV 78

Query: 127 NLGSSQQF 134
                  F
Sbjct: 79  EARGEIDF 86

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  100 bits (251), Expect = 1e-25
 Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 5/137 (3%)

Query: 7   LYNRESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVIYPPEVSVEKQWIHTA--P 63
           + +   L +  +     G Y+C        E   K+  V V  PP V   +  ++     
Sbjct: 151 VLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANL 210

Query: 64  DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYM 121
                ++C+    P   + W +DG  I      D     S +   L +R++   D   Y+
Sbjct: 211 GQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYV 270

Query: 122 CQASNNLGSSQQFIQLS 138
           C A N  G     I L 
Sbjct: 271 CIAENKAGEQDASIHLK 287

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 90.3 bits (224), Expect = 9e-22
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 1/127 (0%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
           +L +    +  AG+Y+C+ +   G  +     V +                    A I+C
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122

Query: 72  NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
           +V ++ P  + W   G  + L   +   V S  + L +R IK TD G Y C+        
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGE 181

Query: 132 QQFIQLS 138
             F  + 
Sbjct: 182 INFKDIQ 188

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 54.1 bits (130), Expect = 6e-09
 Identities = 14/107 (13%), Positives = 32/107 (29%), Gaps = 6/107 (5%)

Query: 50  PEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKH--- 105
            +V +       +       +C V  +     + WF          +  + V        
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 106 SLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQLSGIPNIPVFQKSSR 151
           +L + +    D G Y C  +   G+     + +  I    +F+ +  
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK-IFQKLMFKNAPT 108

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 97.9 bits (244), Expect = 2e-25
 Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 4/133 (3%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWIHTAPDM 65
            R  L +  VT   +G Y   A+N  G++TS    + V     PP      Q +      
Sbjct: 61  GRAKLTIPAVTKANSGRYSLKATNGSGQATST-AELLVKAETAPPNFVQRLQSMTVRQGS 119

Query: 66  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
           +  +   V   P   V+++RDG  I       +    + +SLL+      D G Y   A+
Sbjct: 120 QVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNAT 179

Query: 126 NNLGSSQQFIQLS 138
           N++G +    +L 
Sbjct: 180 NSVGRATSTAELL 192

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 4/104 (3%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE--KHS 106
            P  +   Q +       A    ++   P  +V WFRDG  I+      + +S    +  
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64

Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--GIPNIPVFQK 148
           L +  +   + G Y  +A+N  G +    +L        P F +
Sbjct: 65  LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQ 108

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 97.2 bits (242), Expect = 4e-25
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 1/127 (0%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
           +L +    +  AG+Y+C+ +   G  +     V +                    A I+C
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122

Query: 72  NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
           +V ++ P  + W   G  + L   +   V S  + L +R IK TD G Y C+        
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGE 181

Query: 132 QQFIQLS 138
             F  + 
Sbjct: 182 INFKDIQ 188

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 53.3 bits (128), Expect = 5e-09
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAK-VEWFR-DGTAITLG-GRIDM-HVSSEK 104
             +V +       +       +C V  +   K + WF  +G  ++    RI +     + 
Sbjct: 2   VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61

Query: 105 HSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
            +L + +    D G Y C  +   G+  
Sbjct: 62  STLTIYNANIDDAGIYKCVVTAEDGTQS 89

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 99.2 bits (247), Expect = 6e-25
 Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 11/162 (6%)

Query: 4   IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP 63
            +      +L +   + K AG+Y+ I  ++ G+  S+   +      E+ +E        
Sbjct: 54  HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSR-LKLVDEAFKELMMEVCKKIALS 112

Query: 64  DMRAEIIC----------NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIK 113
               +I              Y     KV W  +G+AI    R+   V+ E+  L +    
Sbjct: 113 ATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPT 172

Query: 114 DTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGP 155
             D G Y+ +  +     Q+ + LSG      + +  R    
Sbjct: 173 PNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQA 214

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 91.5 bits (227), Expect = 5e-22
 Identities = 20/151 (13%), Positives = 41/151 (27%), Gaps = 21/151 (13%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGESTS--------------------KNFIVNVIY 48
            +  L ++  T    G Y     +                           +  I     
Sbjct: 162 EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR 221

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK-HSL 107
              +      +         + CNV+ +PP +V W ++  A+      ++   + +    
Sbjct: 222 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYF 281

Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
            +  +   D G Y     N  GS      +S
Sbjct: 282 TINGVSTADSGKYGLVVKNKYGSETSDFTVS 312

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 64.9 bits (158), Expect = 2e-12
 Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 4/122 (3%)

Query: 44  VNVIYPPEVSVEKQWIHTAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSS 102
           ++    P       W     +    + C V        + W++D   I++  + D     
Sbjct: 2   IDPFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KD 58

Query: 103 EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVW 162
              +LL+      D G Y     ++ G  +  ++L       +  +  +++      L  
Sbjct: 59  GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKI 118

Query: 163 QV 164
           Q 
Sbjct: 119 QS 120

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  100 bits (250), Expect = 9e-25
 Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 4/127 (3%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
           +L +  VT   +G Y C+ +     + S +  + V+ PP        ++    M  E  C
Sbjct: 276 NLLISNVTDDDSGTYTCVVTYKNE-NISASAELTVLVPPWFLNHPSNLYAYESMDIEFEC 334

Query: 72  NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
            V   P   V W ++G  +       +       +L +  +  +D G Y C A N  G++
Sbjct: 335 AVSGKPVPTVNWMKNGDVVIPSDYFQI---VGGSNLRILGVVKSDEGFYQCVAENEAGNA 391

Query: 132 QQFIQLS 138
           Q   QL 
Sbjct: 392 QSSAQLI 398

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 93.4 bits (232), Expect = 3e-22
 Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 8/133 (6%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD------M 65
           +L + R+    +G+Y+C A N     T     V ++  P +  +  ++    +       
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGK 237

Query: 66  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
            A + C V   PP    W R    I L  +   +      +LL+ ++ D D G Y C  +
Sbjct: 238 DAVLECCVSGYPPPSFTWLRGEEVIQLRSKK--YSLLGGSNLLISNVTDDDSGTYTCVVT 295

Query: 126 NNLGSSQQFIQLS 138
               +     +L+
Sbjct: 296 YKNENISASAELT 308

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 82.2 bits (203), Expect = 2e-18
 Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 1/122 (0%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNI-GESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII 70
           ++   R      GLYQC AS    G   S+   V V  P     + + I         + 
Sbjct: 83  NILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLK 142

Query: 71  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
           C V  +P   + W ++   +         V     +L +  ++  D G Y C A N   +
Sbjct: 143 CEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPAST 202

Query: 131 SQ 132
             
Sbjct: 203 RT 204

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 12/130 (9%)

Query: 30  ASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGT 88
             + +  S+  +             E     T       + C+  ++     ++W +DG 
Sbjct: 3   WGSELE-SSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGL 61

Query: 89  AITLGGRIDMHVSSEKHSLLVRHI-----KDTDFGNYMCQASNNLGSSQQ----FIQLSG 139
            + LG            SLL+++I        D G Y C+AS     S       + ++G
Sbjct: 62  ILALGMDDRKQQLPN-GSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG 120

Query: 140 IPNIPVFQKS 149
                   +S
Sbjct: 121 PLRFLSQTES 130

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 98.3 bits (245), Expect = 1e-24
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 5/130 (3%)

Query: 12  SLDLDRVTLKLAGLYQCIASNN-IGESTSKNFIVNVIYPPEVS-VEKQWIHTAPD-MRAE 68
           +L +  +     G+Y+C       GE   ++ IV V  PP +S  +K +  TA       
Sbjct: 154 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 213

Query: 69  IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
             C    +P   + WFR+G  I    +    +      L VR+I ++D G Y+C+A+N  
Sbjct: 214 FSCRASGSPEPAISWFRNGKLIEENEKY--ILKGSNTELTVRNIINSDGGPYVCRATNKA 271

Query: 129 GSSQQFIQLS 138
           G  ++   L 
Sbjct: 272 GEDEKQAFLQ 281

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 89.1 bits (221), Expect = 3e-21
 Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 1/123 (0%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
            L +    ++ AG+Y+C A++  G++     ++ +                    AE++C
Sbjct: 61  RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVC 120

Query: 72  NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
            V ++P   V W      +T        + +  ++L + +I  +D G Y C+        
Sbjct: 121 RVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRVEARGE 179

Query: 132 QQF 134
             F
Sbjct: 180 IDF 182

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 59.8 bits (145), Expect = 7e-11
 Identities = 15/84 (17%), Positives = 30/84 (35%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
             +V++    +  +        C     P +   +   G  I    R+ +     +  L 
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLT 63

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQ 132
           + +    D G Y CQA++  G +Q
Sbjct: 64  IYNANIEDAGIYRCQATDAKGQTQ 87

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 1/48 (2%)

Query: 4   IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 51
             L  +   L +  +     G Y C A+N  GE       + V     
Sbjct: 241 YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK-QAFLQVFVQHH 287

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 96.2 bits (239), Expect = 2e-24
 Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 10/136 (7%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFI-VNVIYPPEVSVEKQWIHTAPDMRAEII 70
            +    VT K  G Y C+ S   G++  +  I + V+ PP               RA + 
Sbjct: 66  GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLT 125

Query: 71  CNVY-ANPPAKVEWFRDGTAITLGGRID--------MHVSSEKHSLLVRHIKDTDFGNYM 121
           C+ +  +PP++  WF+DG ++                 +  +   L+   +   D G Y 
Sbjct: 126 CSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYY 185

Query: 122 CQASNNLGSSQQFIQL 137
           CQA N  G++ +    
Sbjct: 186 CQAQNGYGTAMRSEAA 201

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 14/126 (11%)

Query: 50  PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKH--- 105
             V   +  +    +   ++ C        +VEW    G+   L        +       
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 106 ----SLLVRHIKDTDFGNYMCQASNNLGS--SQQFIQLSGI--PNIPVFQKSSRRLGPDG 157
                +    +   D G Y C  S   G    +  I L+ +  P+ P     S      G
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSV--TIG 119

Query: 158 YRLVWQ 163
            R V  
Sbjct: 120 NRAVLT 125

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 94.8 bits (236), Expect = 3e-24
 Identities = 24/131 (18%), Positives = 51/131 (38%), Gaps = 5/131 (3%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE---KQWIHTAPDMRAE 68
           +L +     +  G+Y CIA+N +GE  + +  + +   P+       K+  + A      
Sbjct: 64  TLTVMTEEQEDEGVYTCIATNEVGEVET-SSKLLLQATPQFHPGYPLKEKYYGAVGSTLR 122

Query: 69  IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI-KDTDFGNYMCQASNN 127
           +       P   + WF     +     I +  +     L+++++ + T  G Y  Q SN 
Sbjct: 123 LHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182

Query: 128 LGSSQQFIQLS 138
            G+    + + 
Sbjct: 183 FGTVDAILDVE 193

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 20/85 (23%), Positives = 36/85 (42%)

Query: 48  YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSL 107
             P +  E + + T     A++ C +   P   ++W+R G  +    +  M      H+L
Sbjct: 6   EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65

Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQ 132
            V   +  D G Y C A+N +G  +
Sbjct: 66  TVMTEEQEDEGVYTCIATNEVGEVE 90

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 94.8 bits (236), Expect = 4e-24
 Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 7/133 (5%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-----QWIHTAPDMR 66
            L +  VT   A +YQ  A+N  G   S    + V  P ++ + K       +H      
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121

Query: 67  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL-VRHIKDTDFGNYMCQAS 125
             I       P   + W +    I   G   + V+    SL+    ++  D G Y+  A 
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAK 181

Query: 126 NNLGSSQQFIQLS 138
           N  G  Q+ ++L 
Sbjct: 182 NRFGIDQKTVELD 194

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 56.3 bits (136), Expect = 6e-10
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 48  YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE--KH 105
             P    E + ++      A ++C V  +P   V+W+R G  I   G        +   H
Sbjct: 3   MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62

Query: 106 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
            L++  + D D   Y  +A+N  GS      L 
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSVSGTASLE 95

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 98.9 bits (246), Expect = 8e-24
 Identities = 41/199 (20%), Positives = 77/199 (38%), Gaps = 16/199 (8%)

Query: 4   IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIHTA 62
           ++L  +  +L L  VT    G Y+C   N +    S   I+NV+Y P + ++   + +  
Sbjct: 335 LQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYR 394

Query: 63  PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
           P +   + C+  +NPPA+  W  DG                   L + +I + + G Y C
Sbjct: 395 PGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ-----------ELFISNITEKNSGLYTC 443

Query: 123 QASNNLGSSQQ--FIQLSGIPNIPVFQKSSRRLGP--DGYRLVWQVDTYSGIIQYLLKFR 178
           QA+N+     +     ++    +P    SS    P  D   + +  +  +    YL    
Sbjct: 444 QANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVN 503

Query: 179 EREELTPWRNIVIPSDGSL 197
            +      R  +   + +L
Sbjct: 504 GQSLPVSPRLQLSNGNRTL 522

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 93.1 bits (231), Expect = 7e-22
 Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 12/136 (8%)

Query: 4   IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE-VSVEKQWIHTA 62
           ++L     +L L  VT   A  Y C   N++  + S    ++V+Y P+   +        
Sbjct: 513 LQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYL 572

Query: 63  PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
                 + C+  +NP  +  W  +G                   L +  I   + G Y C
Sbjct: 573 SGANLNLSCHSASNPSPQYSWRINGIPQQHTQ-----------VLFIAKITPNNNGTYAC 621

Query: 123 QASNNLGSSQQFIQLS 138
             SN        I  S
Sbjct: 622 FVSNLATGRNNSIVKS 637

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 92.3 bits (229), Expect = 1e-21
 Identities = 39/199 (19%), Positives = 69/199 (34%), Gaps = 16/199 (8%)

Query: 4   IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA- 62
           ++L     +L L  VT      Y+C   N +    S + I+NV+Y P+         +  
Sbjct: 157 LQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYR 216

Query: 63  PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
                 + C+  +NPPA+  WF +GT                  L + +I   + G+Y C
Sbjct: 217 SGENLNLSCHAASNPPAQYSWFVNGTFQQSTQE-----------LFIPNITVNNSGSYTC 265

Query: 123 QASNNLGSSQQ----FIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFR 178
           QA N+     +     I +   P  P    ++     D   +    +       YL    
Sbjct: 266 QAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVN 325

Query: 179 EREELTPWRNIVIPSDGSL 197
            +      R  +   + +L
Sbjct: 326 NQSLPVSPRLQLSNDNRTL 344

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 79.2 bits (195), Expect = 3e-17
 Identities = 21/151 (13%), Positives = 48/151 (31%), Gaps = 8/151 (5%)

Query: 5   ELLYNRESLDLDRVTLKLAGLYQCIASNNIG--ESTSKNFIVNVIYPPEVSVEKQWIHTA 62
           E++Y   SL +  +     G Y      +    E  +  F V    P             
Sbjct: 65  EIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVE 124

Query: 63  PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
                   C           W+ +  ++ +  R  + +S+   +L + ++   D  +Y C
Sbjct: 125 DKDAVAFTCEPETQDA-TYLWWVNNQSLPVSPR--LQLSNGNRTLTLFNVTRNDTASYKC 181

Query: 123 QASNNLGSSQQ---FIQLSGIPNIPVFQKSS 150
           +  N + + +     + +   P+ P     +
Sbjct: 182 ETQNPVSARRSDSVILNVLYGPDAPTISPLN 212

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 17/117 (14%)

Query: 51  EVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH----- 105
           ++++E    + A      ++ +          W++          I   + +++      
Sbjct: 1   KLTIESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPA 60

Query: 106 -----------SLLVRHIKDTDFGNYMCQASNNL-GSSQQFIQLSGIPNIPVFQKSS 150
                      SLL+++I   D G Y      +   + +   Q    P +P    SS
Sbjct: 61  YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISS 117

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 95.0 bits (236), Expect = 2e-23
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 7/136 (5%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHTAPD 64
                 + R     +  YQC A     +  S +  + V      PP +++    +     
Sbjct: 142 PWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRG 201

Query: 65  MRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYM 121
             A+I+C+  +      V    + T + +  + D H +  +   +L +  +     GNY 
Sbjct: 202 EAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYS 261

Query: 122 CQASNNLGSSQQFIQL 137
           C ASN  G     +  
Sbjct: 262 CVASNVQGKHSTSMFF 277

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 70.0 bits (171), Expect = 2e-14
 Identities = 25/145 (17%), Positives = 37/145 (25%), Gaps = 11/145 (7%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-QWIHTAPDMRAEII 70
            L  +  T +  G Y+C    +     S    + V  P        Q +    D  A + 
Sbjct: 52  ILSTNNATFQNTGTYRCTEPGDPL-GGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLP 110

Query: 71  CNVYA-NPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
           C +      A V   R  G  +           S  H   +   K     +Y C A    
Sbjct: 111 CLLTDPVLEAGVSLVRVRGRPLMRHTNY---SFSPWHGFTIHRAKFIQSQDYQCSALMGG 167

Query: 129 GSSQ----QFIQLSGIPNIPVFQKS 149
                   +      IP  P     
Sbjct: 168 RKVMSISIRLKVQKVIPGPPALTLV 192

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 42.3 bits (99), Expect = 7e-05
 Identities = 12/91 (13%), Positives = 20/91 (21%), Gaps = 9/91 (9%)

Query: 48  YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSL 107
             P +      +   P     + C         VEW              ++       L
Sbjct: 3   SIPVIEPSVPELVVKPGATVTLRCVG----NGSVEWDGP-----PSPHWTLYSDGSSSIL 53

Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
              +    + G Y C    +       I L 
Sbjct: 54  STNNATFQNTGTYRCTEPGDPLGGSAAIHLY 84

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 91.1 bits (226), Expect = 7e-23
 Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 8/133 (6%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
              +++   + +G Y C+   +   +   N  + V   P+++  K+  +      A + C
Sbjct: 57  EYRINKPRAEDSGEYHCVY--HFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYC 114

Query: 72  NVYANPPAKVEWFRDGTAIT-----LGGRIDMHVSSEKHSLLVRHIKDT-DFGNYMCQAS 125
                P  +  W +    +        GR  +        L + +++ T D G Y C A+
Sbjct: 115 KSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNAT 174

Query: 126 NNLGSSQQFIQLS 138
           N++GS+     L 
Sbjct: 175 NSIGSASVSTVLR 187

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 52.9 bits (127), Expect = 8e-09
 Identities = 11/92 (11%), Positives = 32/92 (34%), Gaps = 8/92 (8%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE--WFRDGTAITLGGRIDMHVSSEKHS 106
            P +   ++ I     +   + CN+ ++    +   W ++G  +T   +   +       
Sbjct: 3   EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASN-----ME 57

Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
             +   +  D G Y C   + + + +    + 
Sbjct: 58  YRINKPRAEDSGEYHCVY-HFVSAPKANATIE 88

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 96.2 bits (239), Expect = 7e-23
 Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 9/142 (6%)

Query: 5   ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV---IYPPEVSVEKQWIHT 61
            + ++   L ++ V  +  G+YQC   N+   + + +  + +     PP +    Q    
Sbjct: 383 AIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEA-SAELKLGGRFDPPVIRQAFQEETM 441

Query: 62  APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHV-----SSEKHSLLVRHIKDTD 116
            P     + C    NP  ++ W  DG  I    R  +             L +  +   D
Sbjct: 442 EPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHAND 501

Query: 117 FGNYMCQASNNLGSSQQFIQLS 138
            G Y C A + +G ++   +L+
Sbjct: 502 GGLYKCIAKSKVGVAEHSAKLN 523

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 94.2 bits (234), Expect = 3e-22
 Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 4/130 (3%)

Query: 12  SLDLDRVTLKL-AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-QWIHTAPDMRAEI 69
           +L ++ V        Y C+A N  G S   +  V V+  P +     +           +
Sbjct: 580 TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTL 639

Query: 70  ICNVYANP-PAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
            C+V     P  ++W  DG AI+    I    V      L +  ++ +  GN+ C A N 
Sbjct: 640 HCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNL 699

Query: 128 LGSSQQFIQL 137
            G  Q    L
Sbjct: 700 AGHQQFTTPL 709

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 89.2 bits (221), Expect = 1e-20
 Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 13/140 (9%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
           +L +    ++ +G Y C+ +N++G  + +  ++ V  P    ++           A   C
Sbjct: 307 TLIIKDAVVEDSGKYLCVVNNSVGGESVE-TVLTVTAPLSAKIDPPTQTVDFGRPAVFTC 365

Query: 72  NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
               NP   V W +DG AI             +  L +  +K  D G Y C   N+  S+
Sbjct: 366 QYTGNPIKTVSWMKDGKAI----------GHSESVLRIESVKKEDKGMYQCFVRNDRESA 415

Query: 132 QQFIQL--SGIPNIPVFQKS 149
           +   +L   G  + PV +++
Sbjct: 416 EASAELKLGGRFDPPVIRQA 435

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 88.8 bits (220), Expect = 2e-20
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 4/123 (3%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
            L ++ V    AG + C A N  G        +NV  PP   +E      A    A++ C
Sbjct: 678 VLTIEAVEASHAGNFTCHARNLAGHQQFT-TPLNVYVPPRWILEPTDKAFAQGSDAKVEC 736

Query: 72  NVYANPPAKVEWFRDGTAITLGGRI---DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
                P  +V W +         +      ++  E+ +L V +I+ T+ G Y+C+A N +
Sbjct: 737 KADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGI 796

Query: 129 GSS 131
           GS 
Sbjct: 797 GSG 799

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 81.5 bits (201), Expect = 7e-18
 Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 6/127 (4%)

Query: 16  DRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV-- 73
           D      A +Y C+A N  G   S++  V  +       +    H      A I C +  
Sbjct: 105 DYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPS 164

Query: 74  -YANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTD-FGNYMCQASNNLG 129
             A+    V W  D       G      ++      L +R +   D + +Y C+  + L 
Sbjct: 165 FVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLT 224

Query: 130 SSQQFIQ 136
              +   
Sbjct: 225 GETRLSA 231

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 76.9 bits (189), Expect = 3e-16
 Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 12/128 (9%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVI---------YPPEVSVEKQWIHTAPDM-RAEIICN 72
              YQC   + +   T  +     +          P  VS+ K  + T        ++C 
Sbjct: 212 YKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCP 271

Query: 73  VYANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
               P     W++     T    + +   V     +L+++     D G Y+C  +N++G 
Sbjct: 272 AQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG 331

Query: 131 SQQFIQLS 138
                 L+
Sbjct: 332 ESVETVLT 339

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 71.5 bits (175), Expect = 2e-14
 Identities = 31/150 (20%), Positives = 48/150 (32%), Gaps = 11/150 (7%)

Query: 13  LDLDRVTLKLAGLYQCIASNNIGEST-SKNFIVNVIYPPEVSVE-KQWIHTAPDMRAEII 70
           +++    LK   L+  +A    G  T + N        P    E    I  +    AEI 
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60

Query: 71  CNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF------GNYMCQ 123
           C    NP  ++ W R DGTA+     +     S    L+    +  D+        Y C 
Sbjct: 61  CKASGNPMPEIIWIRSDGTAVGDVPGL--RQISSDGKLVFPPFRAEDYRQEVHAQVYACL 118

Query: 124 ASNNLGSSQQFIQLSGIPNIPVFQKSSRRL 153
           A N  GS               ++    + 
Sbjct: 119 ARNQFGSIISRDVHVRAVVAQYYEADVNKE 148

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
           +L +D +     G Y C A N IG   S   +++V    
Sbjct: 774 TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHH 812

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 94.6 bits (235), Expect = 9e-23
 Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
           +L +  V+ + +G Y C+ASN +G S      V V   P    E + +  AP     ++C
Sbjct: 276 ALRITNVSEEDSGEYFCLASNKMG-SIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVC 334

Query: 72  NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
               NP   V+W  +G  +      + +      +++ R  + +    Y C  SN  G  
Sbjct: 335 RANGNPKPTVQWMVNGEPLQSAPP-NPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYL 393

Query: 132 QQFIQLS 138
                +S
Sbjct: 394 LANAFVS 400

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 71.8 bits (176), Expect = 9e-15
 Identities = 27/140 (19%), Positives = 43/140 (30%), Gaps = 10/140 (7%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-QWIHTAPDMRAEIICNVYA-NPPAK 80
            G YQC A N  G + S    + V   P    E    +         + CN     P   
Sbjct: 89  EGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPV 148

Query: 81  VEWFRDG-TAITLGGRIDMHVSSEKHSLLVRHIKDTD-FGNYMCQASNNLGSSQQ---FI 135
           + W       IT   R+          L   ++   D   +Y C A  +   + Q     
Sbjct: 149 IFWMSSSMEPITQDKRV---SQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPF 205

Query: 136 QLSGIPNIPVFQKSSRRLGP 155
            L  +    V +++   + P
Sbjct: 206 TLKVLTTRGVAERTPSFMYP 225

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 71.8 bits (176), Expect = 1e-14
 Identities = 22/128 (17%), Positives = 41/128 (32%), Gaps = 15/128 (11%)

Query: 23  AGLYQCIASNNIGEST--SKNFIVNVIYPPEVSVEK----------QWIHTAPDMRAEII 70
              Y C A  +   +      F + V+    V+                     M   + 
Sbjct: 184 QTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLE 243

Query: 71  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
           C     P   + W++ G  +           +   +L + ++ + D G Y C ASN +GS
Sbjct: 244 CIASGVPTPDIAWYKKGGDLPSDKA---KFENFNKALRITNVSEEDSGEYFCLASNKMGS 300

Query: 131 SQQFIQLS 138
            +  I + 
Sbjct: 301 IRHTISVR 308

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 61.8 bits (150), Expect = 2e-11
 Identities = 26/170 (15%), Positives = 48/170 (28%), Gaps = 9/170 (5%)

Query: 37  STSKNFIVNVIYPPEVSVEKQWIHTA-PDMRAEIICNVYANPPAKVEWFRDGTAITLGGR 95
               +    +  PP ++ +    H   P     I C    NP     W R+     +   
Sbjct: 4   PMDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKD 63

Query: 96  IDMHVSSEKHSLLVR----HIKDTDFGNYMCQASNNLGSSQQ---FIQLSGIPNIPVFQK 148
             + +     +L++        +   G Y C A N  G++      +Q+S  P  P    
Sbjct: 64  PRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENL 123

Query: 149 SSRRLGP-DGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSL 197
               +       L                    E +T  + +    +G L
Sbjct: 124 DPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDL 173

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 93.8 bits (233), Expect = 2e-22
 Identities = 28/127 (22%), Positives = 42/127 (33%), Gaps = 5/127 (3%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
            L +  V  +  G Y+C A N  G  T +   + +   P+                   C
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQ-GRIIIHAQPDWLDVITDTEADIGSDLRWSC 316

Query: 72  NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
                P   V W RDG  +    RI++        L    +   D G Y C A N  G+ 
Sbjct: 317 VASGKPRPAVRWLRDGQPLASQNRIEV----SGGELRFSKLVLEDSGMYQCVAENKHGTV 372

Query: 132 QQFIQLS 138
               +L+
Sbjct: 373 YASAELT 379

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 78.7 bits (194), Expect = 3e-17
 Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 3/135 (2%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ-WIHTAPDMRAEIICNVYA-NPPAK 80
           AG YQC+A+N  G   S+   +   +  E S E++  +           C+     P   
Sbjct: 74  AGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALS 133

Query: 81  VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI 140
             W  +     +       VS    +L +   + +D GNY C A++++    + +     
Sbjct: 134 YRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFS 193

Query: 141 PNIPVFQKSSRRLGP 155
             + +  + +R+  P
Sbjct: 194 Q-LSLAAEDARQYAP 207

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 72.2 bits (177), Expect = 7e-15
 Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 17/138 (12%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGEST----SKNFIVNVIYPPEVSVEKQWIHTAP---- 63
           +L + +      G Y C A+++I   T    SK   +++                P    
Sbjct: 159 NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTY 218

Query: 64  ---DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
                   + C  + NP  +++W +        G       S +  L ++++   D G Y
Sbjct: 219 ALTGQMVTLECFAFGNPVPQIKWRKLD------GSQTSKWLSSEPLLHIQNVDFEDEGTY 272

Query: 121 MCQASNNLGSSQQFIQLS 138
            C+A N  G      ++ 
Sbjct: 273 ECEAENIKGRDTYQGRII 290

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 9/105 (8%)

Query: 48  YPPEVSVEKQ---WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK 104
           Y P    +     +   + + +  + C   ANPPA   W  +GT + +G   D       
Sbjct: 3   YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGP--DSRYRLVA 60

Query: 105 HSLLV-RHIKDTDFGNYMCQASNNLG---SSQQFIQLSGIPNIPV 145
             L++   +K  D G+Y C A+N  G   S +  ++   +     
Sbjct: 61  GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSA 105

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 93.7 bits (233), Expect = 2e-22
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 5/127 (3%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
            L++     + AG Y+C+A N+ G        +     P        IH A +      C
Sbjct: 259 ILEIPNFQQEDAGSYECVAENSRG-KNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWEC 317

Query: 72  NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
                P     W ++G  +    RI +    E+ +L +  +  +D G Y C A N  G  
Sbjct: 318 KANGRPKPTYRWLKNGDPLLTRDRIQI----EQGTLNITIVNLSDAGMYQCVAENKHGVI 373

Query: 132 QQFIQLS 138
               +LS
Sbjct: 374 FSSAELS 380

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 79.1 bits (195), Expect = 2e-17
 Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 4/114 (3%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ-WIHTAPDMRAEIICNV-YANPPAK 80
           AG YQCIA+N+ G   S+   +   Y        +  +         ++C     +    
Sbjct: 75  AGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELS 134

Query: 81  VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 134
             W  +        R    VS E  +L +  ++ +D GNY C  +N + + +  
Sbjct: 135 YAWIFNEYPSYQDNRR--FVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVL 186

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 72.2 bits (177), Expect = 6e-15
 Identities = 28/138 (20%), Positives = 51/138 (36%), Gaps = 15/138 (10%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVNVI-------YPPEVSVEK-QWIHT 61
           +L + +V     G Y C+ +N +           + +        Y P++ V+  + +  
Sbjct: 158 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA 217

Query: 62  APDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
                 ++ C    NP   + W R DG  I    R           L + + +  D G+Y
Sbjct: 218 EKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKS----NGILEIPNFQQEDAGSY 273

Query: 121 MCQASNNLGSSQQFIQLS 138
            C A N+ G +    QL+
Sbjct: 274 ECVAENSRGKNVAKGQLT 291

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 58.3 bits (141), Expect = 4e-10
 Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 11/154 (7%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
           P  V         + + + ++ C V  NP   + W  +GT + +G   D   S    SLL
Sbjct: 12  PSHVMF----PLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGM--DFRYSVVDGSLL 65

Query: 109 VRHI-KDTDFGNYMCQASNNLG---SSQQFIQLSGIPNIPVFQKSSRRLGP-DGYRLVWQ 163
           + +  K  D G Y C A+N+ G   S +  +Q + + N     +S+  +    G  L+  
Sbjct: 66  INNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCG 125

Query: 164 VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSL 197
              +SG + Y   F E       R  V    G+L
Sbjct: 126 PPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNL 159

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 90.6 bits (225), Expect = 2e-22
 Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIHTAPDMRAEIICNV-YANPPAK 80
            G+Y C+A N +GE+ S +  + V     +       +  A    A + C     +P   
Sbjct: 84  EGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPT 143

Query: 81  VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
           + W +DG+ +         ++     L++ + + +D G Y+C  +N +G  +
Sbjct: 144 ISWKKDGSPLDDKDE---RITIRGGKLMITYTRKSDAGKYVCVGTNMVGERE 192

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 7/91 (7%)

Query: 48  YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMH--VSSEKH 105
           +PP +      +  +    A + C     P   +EW++ G  +           +     
Sbjct: 8   FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67

Query: 106 SLLVRHI-----KDTDFGNYMCQASNNLGSS 131
           SL    I        D G Y+C A N LG +
Sbjct: 68  SLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 93.4 bits (232), Expect = 2e-22
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-DMRAEII 70
            L       +  G+Y C   N +G+    +  + V+  P+   + + +          I 
Sbjct: 271 RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIP 330

Query: 71  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
           C V   P   V W  +   ++ GGR  +        L+++ +K+ D G Y C+A+N  G 
Sbjct: 331 CKVTGLPAPNVVWSHNAKPLS-GGRATVT----DSGLVIKGVKNGDKGYYGCRATNEHGD 385

Query: 131 SQQFIQLS 138
                 + 
Sbjct: 386 KYFETLVQ 393

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 80.0 bits (197), Expect = 1e-17
 Identities = 21/130 (16%), Positives = 37/130 (28%), Gaps = 8/130 (6%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
           SL   R      G YQC A    G ++S+       Y      +            ++ C
Sbjct: 63  SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDC 122

Query: 72  NV-YANPPAKVEWFRDGTAITLGGRIDMH----VSSEKHSLLVRHIKDTD---FGNYMCQ 123
            +  A P   + W +  +       +        +    +L    +   D      Y+C 
Sbjct: 123 VLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182

Query: 124 ASNNLGSSQQ 133
           A N     + 
Sbjct: 183 AKNAAVDEEV 192

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 77.6 bits (191), Expect = 9e-17
 Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 12/122 (9%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIY----------PPEVSVEKQWIHTAPDMRAEIICN 72
              Y C A N   +         +             P      + +         I C 
Sbjct: 176 IYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCM 235

Query: 73  VYANPPAKVEWFRDGTAITL--GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
             +NP     +F++G  +      RI  H  +    LL +     D G Y C+  N +G 
Sbjct: 236 YGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK 295

Query: 131 SQ 132
            Q
Sbjct: 296 PQ 297

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 60.3 bits (146), Expect = 7e-11
 Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 5/110 (4%)

Query: 44  VNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSS 102
           + V   P +  +   +    +    + C +  N    K  W +DG +       +  +  
Sbjct: 1   LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEH-NAALRK 59

Query: 103 EKHSLLVRHIKDTDFGNYMCQASNNLG---SSQQFIQLSGIPNIPVFQKS 149
           ++ SL+    + +D G+Y C A    G   S     + + +   P     
Sbjct: 60  DEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHE 109

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 89.9 bits (223), Expect = 3e-22
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 10/117 (8%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-------DMRAEIICNVYA 75
              Y+C+A N +G++ S +  + +    +       I   P            + C    
Sbjct: 77  DAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIG 136

Query: 76  NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
           NP   + W ++ T + +        S +   L + + ++ D G Y C A N++G+  
Sbjct: 137 NPTPNIYWIKNQTKVDMSNP---RYSLKDGFLQIENSREEDQGKYECVAENSMGTEH 190

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 53.3 bits (128), Expect = 7e-09
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 46  VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH 105
             +PPE+  + Q         A   C    +PP  + W ++G  ++        V  +  
Sbjct: 3   GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQS-RYTVLEQPG 61

Query: 106 SLLVRHIKDT----DFGNYMCQASNNLGSSQQ 133
            + +  I+      D   Y C A N +G +  
Sbjct: 62  GISILRIEPVRAGRDDAPYECVAENGVGDAVS 93

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 91.5 bits (227), Expect = 4e-22
 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 7/140 (5%)

Query: 6   LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHT 61
                    + +  +  +  Y C    N  ESTS    + V      PP++ +E   +  
Sbjct: 139 FFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVR 198

Query: 62  APDMRAEIICNVYANPPAKVEWFRDGTA---ITLGGRIDMHVSSEKHSLLVRHIKDTDFG 118
                A+I+C+            + G     I L      +   +  +L +  +   D G
Sbjct: 199 IRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAG 258

Query: 119 NYMCQASNNLGSSQQFIQLS 138
            Y C ASN++G+    +   
Sbjct: 259 IYSCVASNDVGTRTATMNFQ 278

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 77.3 bits (190), Expect = 5e-17
 Identities = 29/148 (19%), Positives = 46/148 (31%), Gaps = 9/148 (6%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-QWIHTAPDMRAEII 70
           +L     T K  G Y+C    +   + S    + V  P        Q +       A + 
Sbjct: 52  TLTTRNATFKNTGTYRCTELEDPM-AGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLP 110

Query: 71  CNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
           C +        V   R+G    L     ++  S     ++R  K  D   Y+C+   N  
Sbjct: 111 CLITDPALKDSVSLMREGGRQVLRKT--VYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGR 168

Query: 130 SSQ-QFIQL---SGIPNIPVFQKSSRRL 153
            S    I L      P  P  +    +L
Sbjct: 169 ESTSTGIWLKVNRVHPEPPQIKLEPSKL 196

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 9/90 (10%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
            P +      +   P     + C         VEW    +         +   S   +L 
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVS----NGSVEWDGPISP-----YWTLDPESPGSTLT 54

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
            R+    + G Y C    +  +    I L 
Sbjct: 55  TRNATFKNTGTYRCTELEDPMAGSTTIHLY 84

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 88.7 bits (220), Expect = 4e-22
 Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 10/122 (8%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
            L L  V    AG Y C   +      S+   + V   P  +VE + +   P+   ++ C
Sbjct: 61  FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSC 120

Query: 72  NVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
                P P  + W+R  T I                 ++     T    + C+A N  G 
Sbjct: 121 EAVGPPEPVTIVWWRGTTKIG---------GPAPSPSVLNVTGVTQSTMFSCEAHNLKGL 171

Query: 131 SQ 132
           + 
Sbjct: 172 AS 173

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 13/86 (15%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HS 106
             ++      +  +     ++ C+V       ++W +DG  +    ++ + VS +     
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF 61

Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQ 132
           L ++ ++ +D G Y CQ  +   +  
Sbjct: 62  LSLKSVERSDAGRYWCQVEDGGETEI 87

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 87.4 bits (216), Expect = 2e-21
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 12/134 (8%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
             +    +    G Y C+       + +    + +  PP V   K   H      A ++C
Sbjct: 50  KTEFKVDSDDQWGEYSCVFLPEPMGTAN----IQLHGPPRVKAVKSSEHINEGETAMLVC 105

Query: 72  NVYANPPA-KVEWFRDGTAI------TLGGRIDMHVSSEKHSLLVRHIKDT-DFGNYMCQ 123
              + PP     W++   +           R  +  S  +  L + ++    D G Y C 
Sbjct: 106 KSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCN 165

Query: 124 ASNNLGSSQQFIQL 137
            +++ GS Q  I L
Sbjct: 166 GTSSKGSDQAIITL 179

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 48.5 bits (115), Expect = 3e-07
 Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 10/86 (11%)

Query: 66  RAEIICNVYANPPAKVE--WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
           +  + C++  +        W + G  +          +        +   D  +G Y C 
Sbjct: 15  KILLTCSLNDSATEVTGHRWLKGGVVLKED-------ALPGQKTEFKVDSDDQWGEYSCV 67

Query: 124 ASNNLGSSQQFIQLSGIPNIPVFQKS 149
                  +   IQL G P +   + S
Sbjct: 68  FLPEPMGTAN-IQLHGPPRVKAVKSS 92

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 89.9 bits (222), Expect = 3e-21
 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 4/130 (3%)

Query: 24  GLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV-YANPPAKVE 82
             Y C  +   G+        ++  PP    E   + T      ++ C + YA     + 
Sbjct: 103 RRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNIT 162

Query: 83  WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPN 142
           W+++   + + G      S    +L++ + +  D G Y C    +    +  I +S    
Sbjct: 163 WYKNNQELIIDGT---KYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKI 219

Query: 143 IPVFQKSSRR 152
           + V      R
Sbjct: 220 LTVIPSQDHR 229

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 69.9 bits (170), Expect = 3e-14
 Identities = 19/145 (13%), Positives = 40/145 (27%), Gaps = 20/145 (13%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQW---------IHTA 62
           +L +    L+ +G Y C    +       + +V+      V   +           I+  
Sbjct: 183 NLIIHNPELEDSGRYDCYVHYDDV-RIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVT 241

Query: 63  PDMRAEIICNVYANP----PAKVEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIK 113
               A I C   +         ++W      I         + +        +L   ++ 
Sbjct: 242 IGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVT 301

Query: 114 DTDFGN-YMCQASNNLGSSQQFIQL 137
           +   GN Y C+  N          +
Sbjct: 302 EEYIGNTYTCRGHNYYFDKTLTTTV 326

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 86.9 bits (215), Expect = 4e-21
 Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 24/139 (17%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-- 66
           N   L  + V +K AG Y C  +NN     S+   ++V   PE         +   ++  
Sbjct: 63  NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQIC 122

Query: 67  -------------AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIK 113
                          + C    +P    +WF++   +T            K   +V ++ 
Sbjct: 123 VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT---------HETKKLYMVPYVD 173

Query: 114 DTDFGNYMCQASNNLGSSQ 132
               G Y C   N+  S  
Sbjct: 174 LEHQGTYWCHVYNDRDSQD 192

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 57.6 bits (139), Expect = 2e-10
 Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 11/102 (10%)

Query: 34  IGESTSKNFIVNVIYP--PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAIT 91
           +G S   +   + + P   +++V  +          ++ C    +P  + +WF+    I 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIP 60

Query: 92  LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ 133
                    +     L+   +   D G Y+C+ +NN      
Sbjct: 61  ---------NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFS 93

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 8/45 (17%), Positives = 16/45 (35%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 53
            ++   +  V L+  G Y C   N+     SK   + +     + 
Sbjct: 163 TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLG 207

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 86.8 bits (215), Expect = 5e-21
 Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 7/117 (5%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIHTAPDMRAEIICN-VYANPPAK 80
            G Y C+A N +G++ S++  + +     +  VE +    A    A + C      P   
Sbjct: 81  GGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPT 140

Query: 81  VEWFRDGTAITLGGRIDMHVSS-----EKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
           + W +DG  +     +    SS     +  +LL+ +++  D GNY C A N +G+ +
Sbjct: 141 LIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRE 197

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 52.2 bits (125), Expect = 2e-08
 Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS----SEK 104
            P +      +    +  A + C V   P   +EWF+DG  ++   +    V     +  
Sbjct: 9   SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68

Query: 105 HSLLVRHIKDTDFGNYMCQASNNLG---SSQQFIQLSGIPNIPVFQK 148
               ++  K+ D G Y C A N +G   S    +Q++ +     F+ 
Sbjct: 69  FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLR--DDFRV 113

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 11/46 (23%), Positives = 16/46 (34%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 57
           +L +  V     G Y+CIA N +G   S    + V           
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 90.1 bits (223), Expect = 5e-21
 Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 21/148 (14%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
            L L R+     G Y  + SN+   + +  F V V   P      + +     +   + C
Sbjct: 376 ELHLTRLKGTEGGTYTFLVSNSDV-NAAIAFNVYVNTKP------EILTYDRLVNGMLQC 428

Query: 72  NVYANPPAKVEWF-------RDGTAITLGGRIDMHVSSEKH-----SLLVRHIKDTDFGN 119
                P   ++W+       R   ++       ++ S            +        G 
Sbjct: 429 VAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGT 488

Query: 120 YMCQASNNLGSSQQFIQLS--GIPNIPV 145
             C+A N++G +  +   +  G     +
Sbjct: 489 VECKAYNDVGKTSAYFNFAFKGNNKEQI 516

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 87.0 bits (215), Expect = 8e-20
 Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQW---IHTAPDMRAE 68
           +L +    +  +G++ C A+N  G S +    + V+    +++       +        +
Sbjct: 274 TLTISSARVNDSGVFMCYANNTFG-SANVTTTLEVVDKGFINIFPMINTTVFVNDGENVD 332

Query: 69  IICNVYANP-PAKVEWFRDGTAIT-----LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
           +I    A P P   +W       T          +         L +  +K T+ G Y  
Sbjct: 333 LIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTF 392

Query: 123 QASNNLGSSQQFIQLS 138
             SN+  ++     + 
Sbjct: 393 LVSNSDVNAAIAFNVY 408

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 80.5 bits (198), Expect = 1e-17
 Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 12/136 (8%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNVYA-NP 77
                C          S+ FI+ V       P VSV K            + C +   + 
Sbjct: 181 RLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSS 240

Query: 78  PAKVEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIKDTDFGNYMCQASNNLGSSQ 132
                W R+ +   L  + +     + +     +L +   +  D G +MC A+N  GS+ 
Sbjct: 241 SVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSAN 300

Query: 133 QFIQLS--GIPNIPVF 146
               L       I +F
Sbjct: 301 VTTTLEVVDKGFINIF 316

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 73.5 bits (180), Expect = 3e-15
 Identities = 13/121 (10%), Positives = 32/121 (26%), Gaps = 5/121 (4%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
               ++      G Y C   + +  S      V V  P ++ +  + ++   D    + C
Sbjct: 81  EWITEKAEATNTGKYTCTNKHGLSNSIY----VFVRDPAKLFLVDRSLYGKEDNDTLVRC 136

Query: 72  NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
            +  +P       +      L   +      +   ++    +        C       S 
Sbjct: 137 PL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSV 195

Query: 132 Q 132
            
Sbjct: 196 L 196

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 54.7 bits (131), Expect = 7e-09
 Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 17/113 (15%)

Query: 23  AGLYQCI----ASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP 78
           A  + C+         G S           PP +   K  +         ++C      P
Sbjct: 7   AWDFLCVLLLLLRVQTGSSQPS-VSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTD----P 61

Query: 79  AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
             V+W  +         +D    ++++  +    + T+ G Y C   + L +S
Sbjct: 62  GFVKWTFEI--------LDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNS 106

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 89.8 bits (222), Expect = 8e-21
 Identities = 16/128 (12%), Positives = 33/128 (25%), Gaps = 10/128 (7%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV--EKQWIHTAPDMRAEI 69
              +  V     G Y C +S +  +S      V ++    ++     +            
Sbjct: 291 FAFVSSVARNDTGYYTCSSSKHPSQSAL----VTIVEKGFINATNSSEDYEIDQYEEFCF 346

Query: 70  ICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
                A P  +  W     +       +       +S+          G Y+  A N+  
Sbjct: 347 SVRFKAYPQIRCTWTFSRKSFP----CEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA 402

Query: 130 SSQQFIQL 137
              +   L
Sbjct: 403 QFTKMFTL 410

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 88.2 bits (218), Expect = 3e-20
 Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 9/116 (7%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVY-ANPPAKV 81
               +C A N +G   ++ F +++   P+ ++ +  +         I C     N    +
Sbjct: 203 GTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQ--LFLKVGEPLWIRCKAVHVNHGFGL 260

Query: 82  EWFRDGTAITLGGRIDMHVSSEKH------SLLVRHIKDTDFGNYMCQASNNLGSS 131
            W  +  A+  G   +M   S            V  +   D G Y C +S +   S
Sbjct: 261 TWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 84.4 bits (208), Expect = 6e-19
 Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 20/147 (13%)

Query: 3   EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 62
           E + L N  S+          G Y   A N+     +K F +N+   P+V  E       
Sbjct: 370 EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA-QFTKMFTLNIRRKPQVLAE------- 421

Query: 63  PDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHS----------LLVRH 111
               ++  C     P     W +    +      I   V + K +            +  
Sbjct: 422 -ASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNM 480

Query: 112 IKDTDFGNYMCQASNNLGSSQQFIQLS 138
            +        C A N+LG+S + I L+
Sbjct: 481 SEAIKGFLVKCCAYNSLGTSCETILLN 507

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 77.0 bits (189), Expect = 2e-16
 Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 9/141 (6%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
           S+ + ++T   AG Y     +    + +  F V++      ++ + +     + +  ++C
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEAT-NYTILFTVSIRNTLLYTLRRPYFRKMEN-QDALVC 161

Query: 72  NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG-- 129
              + P   VEW    +           V  ++     + + +    +  C A N LG  
Sbjct: 162 ISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE----KVLHELFGTDIRCCARNELGRE 217

Query: 130 -SSQQFIQLSGIPNIPVFQKS 149
            +    I L+  P   + Q  
Sbjct: 218 CTRLFTIDLNQTPQTTLPQLF 238

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 66.6 bits (162), Expect = 6e-13
 Identities = 18/186 (9%), Positives = 55/186 (29%), Gaps = 8/186 (4%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE 82
           +  Y  ++ +      +               E   +         +   V A       
Sbjct: 27  SSSYPMVSESPEDLGCALR-----PQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCL 81

Query: 83  WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS-GIP 141
           W    +++      D+  +    S+++  + +T  G Y+    +   +      +S    
Sbjct: 82  WVFKHSSLNCQPHFDLQ-NRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNT 140

Query: 142 NIPVFQKSSRRLGPDGYRLVWQVDTYSG-IIQYLLKFREREELTPWRNIVIPSDGSLAGP 200
            +   ++   R   +   LV   ++    I++++L   + E        V+  +  +   
Sbjct: 141 LLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHE 200

Query: 201 IYTQSY 206
           ++    
Sbjct: 201 LFGTDI 206

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 85.0 bits (210), Expect = 1e-20
 Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 8/122 (6%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
            L +  + L   G YQC+         S+   V +   P    E +    A +    + C
Sbjct: 69  QLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSC 128

Query: 72  NVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
                P P  + W +D   +             + SL V  +  T   ++ C+A N  G 
Sbjct: 129 QAQGPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGLNKT--SSFSCEAHNAKGV 181

Query: 131 SQ 132
           + 
Sbjct: 182 TT 183

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 50.3 bits (120), Expect = 7e-08
 Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 13/108 (12%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKH-- 105
                     I  A  +   + C +     P +V W RDG  + L       V   +   
Sbjct: 2   ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61

Query: 106 -------SLLVRHIKDTDFGNYMCQASNNLG---SSQQFIQLSGIPNI 143
                   L +  ++ +D G Y C          S   ++ L G+P  
Sbjct: 62  DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYF 109

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIYPPE 51
              + C A N  G +TS+   + V+ P +
Sbjct: 168 TSSFSCEAHNAKGVTTSRTATITVL-PQQ 195

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 87.5 bits (216), Expect = 2e-20
 Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-DMRAEIICNVYANPPA-K 80
                CI + ++     ++  +NV Y PEV++E    +     M  ++ C   ANPPA +
Sbjct: 206 QQSLACIVNYHMD-RFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATE 264

Query: 81  VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
             W     ++  G       +  +       I  +  G Y+C+A+N +G+    ++++
Sbjct: 265 YHWTTLNGSLPKG-----VEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVN 317

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 68.6 bits (167), Expect = 9e-14
 Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 8/135 (5%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE--- 68
           ++ L R+ L+  G+Y C  +     +      + V+  P   +E            +   
Sbjct: 93  TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKV 152

Query: 69  --IICNV-YANPPAKVEWFRDGTAI--TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
               C      PP+ V W             R      +      +   ++    +  C 
Sbjct: 153 LVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACI 212

Query: 124 ASNNLGSSQQFIQLS 138
            + ++   ++ + L+
Sbjct: 213 VNYHMDRFKESLTLN 227

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 45.5 bits (107), Expect = 5e-06
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 57
           NR       +   LAG Y C A+N IG + S    VN+     +     
Sbjct: 282 NRTLFFKGPINYSLAGTYICEATNPIG-TRSGQVEVNITEAAALEHHHH 329

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 17/146 (11%), Positives = 43/146 (29%), Gaps = 31/146 (21%)

Query: 29  IASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP----AKVEWF 84
           +AS   G+   ++    V     +                + C+     P     +V W 
Sbjct: 1   MASMTGGQQMGRDPSQVVQVNDSMYGFI-------GTDVVLHCSFANPLPSVKITQVTWQ 53

Query: 85  RDGTAI---------TLGGRID---------MHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
           +              ++G  +          +  S    ++ +  ++  D G Y+C+ + 
Sbjct: 54  KSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFAT 113

Query: 127 N-LGSSQQFIQLSGIPNIPVFQKSSR 151
              G+ +  + L+ +   P       
Sbjct: 114 FPTGNRESQLNLT-VMAKPTNWIEGT 138

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 84.9 bits (210), Expect = 3e-20
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 11/120 (9%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-DMR------AEIICNVYA 75
             +Y+C+ASNN+GE  S +  + V+   ++      I   P          A ++C    
Sbjct: 76  EAIYECVASNNVGEI-SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASG 134

Query: 76  NPPAKVEWFRDGTAITL---GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
           NP  ++ WF+D   +      GRI    S    +L +   +++D G Y C A+N+ G+  
Sbjct: 135 NPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRY 194

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 56.0 bits (135), Expect = 9e-10
 Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 8/111 (7%)

Query: 46  VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS-EK 104
              PP  +             A  IC    +P  K+ W + G  ++      +       
Sbjct: 3   GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62

Query: 105 HSLLVRHIKD-TDFGNYMCQASNNLGSSQQFIQLS------GIPNIPVFQK 148
             L ++ ++   D   Y C ASNN+G      +L+           P    
Sbjct: 63  SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDM 113

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 51
           +L +++      G Y+C+A+N+ G   S    + V     
Sbjct: 168 ALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 86.3 bits (213), Expect = 3e-20
 Identities = 19/118 (16%), Positives = 30/118 (25%), Gaps = 7/118 (5%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIY--PPEVSVEKQWIHTAPDMRAEIICNVYANPPAK 80
              Y C  +    E  S  + V  +      VSV              ++C V  N    
Sbjct: 153 DRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVN 212

Query: 81  VEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIKDTDFGNYMCQASNNLGSSQQ 133
            EW                   +        L +   +  D G Y C  + ++   Q 
Sbjct: 213 FEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQD 270

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 65.9 bits (160), Expect = 7e-13
 Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 19/159 (11%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP------EVSVEKQWIHTAPDM 65
            L L  +T    G Y C  +++ G  T +   + +  P           E+ +I      
Sbjct: 52  VLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEIT 111

Query: 66  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
              I C V  +P   V        + L    D                  +  +Y+C+ +
Sbjct: 112 EITIPCRV-TDPQLVVTLHEKKGDVALPVPYDHQRGFSGIF---------EDRSYICKTT 161

Query: 126 NNLG---SSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLV 161
                  S   ++    + +I V   + + +   G  + 
Sbjct: 162 IGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENIT 200

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 87.3 bits (216), Expect = 3e-20
 Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 11/127 (8%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
           +L +    ++ +G Y C+ +N++G   S   ++ V  P    ++           A   C
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTC 329

Query: 72  NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
               NP   V W +DG AI                L +  +K  D G Y C   N+  S+
Sbjct: 330 QYTGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRESA 379

Query: 132 QQFIQLS 138
           +   +L 
Sbjct: 380 EASAELK 386

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 75.7 bits (186), Expect = 4e-16
 Identities = 22/126 (17%), Positives = 42/126 (33%), Gaps = 11/126 (8%)

Query: 24  GLYQCIASNNIGEST--SKNFIVNVIYPPEVSVE-------KQWIHTAPDMRAEIICNVY 74
             YQC   + +   T  S      VI  P  S         ++ +         ++C   
Sbjct: 178 KSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ 237

Query: 75  ANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
             P     W++     T    + +   V     +L+++     D G Y+C  +N++G   
Sbjct: 238 GFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGES 297

Query: 133 QFIQLS 138
               L+
Sbjct: 298 VETVLT 303

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 70.7 bits (173), Expect = 2e-14
 Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 6/125 (4%)

Query: 16  DRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV-- 73
           D      A +Y C+A N  G   S++  V  +       +    H      A I C +  
Sbjct: 70  DYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPS 129

Query: 74  -YANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTD-FGNYMCQASNNLG 129
             A+    V W  D       G      ++      L +R +   D + +Y C+  + L 
Sbjct: 130 FVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLT 189

Query: 130 SSQQF 134
              + 
Sbjct: 190 GETRL 194

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 24/112 (21%), Positives = 34/112 (30%), Gaps = 13/112 (11%)

Query: 49  PPEVSVE-KQWIHTAPDMRAEIICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHS 106
            P    E    I  +    AEI C    NP  ++ W R DGTA+     +    S     
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSD--GK 60

Query: 107 LLVRHIKDTDF------GNYMCQASNNLG---SSQQFIQLSGIPNIPVFQKS 149
           L+    +  D+        Y C A N  G   S    ++             
Sbjct: 61  LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNK 112

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 86.0 bits (213), Expect = 5e-20
 Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 11/139 (7%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSK--NFIVNVIY-PPEVSVEKQWIHTAPDMRAE 68
           +L ++       G Y+C+A+N+ G   S   N  V V    P  S+        P     
Sbjct: 165 ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVN 224

Query: 69  IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
           I C    +P   V+W +    +T    + +         ++      D  NY C A ++L
Sbjct: 225 ITCVAVGSPMPYVKWMQGAEDLTPEDDMPV------GRNVLELTDVKDSANYTCVAMSSL 278

Query: 129 GSSQQFIQLS--GIPNIPV 145
           G  +   Q++   +P    
Sbjct: 279 GVIEAVAQITVKSLPKAGT 297

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 79.1 bits (195), Expect = 1e-17
 Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 11/136 (8%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-------DMRAEIICNVYA 75
             +Y+C+A N++GE T  +  + V+   ++      I   P          A ++C    
Sbjct: 76  ENVYECVAQNSVGEITV-HAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASG 134

Query: 76  NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG---SSQ 132
           NP  ++ WF+D   +               +L +   ++TD G Y C A+N+ G   SS 
Sbjct: 135 NPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSP 194

Query: 133 QFIQLSGIPNIPVFQK 148
             + +      P F  
Sbjct: 195 ANLYVRVQNVAPRFSI 210

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 58.3 bits (141), Expect = 3e-10
 Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 6/97 (6%)

Query: 46  VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH 105
              PP    E +         A  +C    +P  +V W + G  +       +       
Sbjct: 3   GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62

Query: 106 SLLVRHIKDT----DFGNYMCQASNNLGSSQQFIQLS 138
           ++L   I+      D   Y C A N++G      +L+
Sbjct: 63  AVL--RIQPLRTPRDENVYECVAQNSVGEITVHAKLT 97

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 87.0 bits (215), Expect = 6e-20
 Identities = 16/134 (11%), Positives = 34/134 (25%), Gaps = 10/134 (7%)

Query: 6   LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV--EKQWIHTAP 63
            +       +  V     G Y C +S +  +S      V ++    ++     +      
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL----VTIVEKGFINATNSSEDYEIDQ 340

Query: 64  DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
                      A P  +  W     +       +       +S+          G Y+  
Sbjct: 341 YEEFCFSVRFKAYPQIRCTWTFSRKSFP----CEQKGLDNGYSISKFCNHKHQPGEYIFH 396

Query: 124 ASNNLGSSQQFIQL 137
           A N+     +   L
Sbjct: 397 AENDDAQFTKMFTL 410

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 84.3 bits (208), Expect = 5e-19
 Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 9/115 (7%)

Query: 26  YQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA-NPPAKVEWF 84
            +C A N +G   ++ F +++   P+ ++ +  +         I C     N    + W 
Sbjct: 206 IRCCARNELGRECTRLFTIDLNQTPQTTLPQ--LFLKVGEPLWIRCKAVHVNHGFGLTWE 263

Query: 85  RDGTAITLGGRIDMHVSSEKH------SLLVRHIKDTDFGNYMCQASNNLGSSQQ 133
            +  A+  G   +M   S            V  +   D G Y C +S +   S  
Sbjct: 264 LENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL 318

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 74.7 bits (183), Expect = 1e-15
 Identities = 27/203 (13%), Positives = 61/203 (30%), Gaps = 8/203 (3%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
           S+ + ++T   AG Y     +     T   F V++      ++ + +     + +  ++C
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATNYTI-LFTVSIRNTLLYTLRRPYFRKMEN-QDALVC 161

Query: 72  NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
              + P   VEW    +           V  ++  +    + +    +  C A N LG  
Sbjct: 162 ISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKV----LHELFGTDIRCCARNELGRE 217

Query: 132 QQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLK-FREREELTPWRNIV 190
              +    +   P        L   G  L  +         + L    E + L       
Sbjct: 218 CTRLFTIDLNQTPQTTLPQLFLKV-GEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFE 276

Query: 191 IPSDGSLAGPIYTQSYNITGLQL 213
           + +  +    I      ++ +  
Sbjct: 277 MSTYSTNRTMIRILFAFVSSVAR 299

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 69.3 bits (169), Expect = 7e-14
 Identities = 20/187 (10%), Positives = 57/187 (30%), Gaps = 10/187 (5%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE 82
           +  Y  ++ +      +               E   +         +   V A       
Sbjct: 27  SSSYPMVSESPEDLGCALR-----PQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCL 81

Query: 83  WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPN 142
           W    +++      D+       S+++  + +T  G Y+    +   +      +S I N
Sbjct: 82  WVFKHSSLNCQPHFDLQNRGV-VSMVILKMTETQAGEYLLFIQSEATNYTILFTVS-IRN 139

Query: 143 IPVF--QKSSRRLGPDGYRLVWQVDTYSG-IIQYLLKFREREELTPWRNIVIPSDGSLAG 199
             ++  ++   R   +   LV   ++    I++++L   + E        V+  +  +  
Sbjct: 140 TLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLH 199

Query: 200 PIYTQSY 206
            ++    
Sbjct: 200 ELFGTDI 206

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 42.4 bits (99), Expect = 6e-05
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 3   EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 51
           E + L N  S+          G Y   A N+  +  +K F +N+    +
Sbjct: 370 EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQF-TKMFTLNIRSGTK 417

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 85.4 bits (211), Expect = 9e-20
 Identities = 24/162 (14%), Positives = 53/162 (32%), Gaps = 14/162 (8%)

Query: 3   EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY------------PP 50
           E+E   N+  +    + +   G+Y C  ++  G ++S       +               
Sbjct: 50  EVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTV 109

Query: 51  EVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLL 108
            V  E              +     +  AKV +  +   I  G +  MH+        + 
Sbjct: 110 PVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF 169

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSS 150
           +  ++D D G Y  Q  +   ++   + L G     + +++ 
Sbjct: 170 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAE 211

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 81.2 bits (200), Expect = 2e-18
 Identities = 18/146 (12%), Positives = 45/146 (30%), Gaps = 22/146 (15%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS------------------ 53
            + ++++  +  G Y     +    + S   ++      ++                   
Sbjct: 167 EMFMEKLQDEDEGTYTFQLQDGKATNHS-TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 225

Query: 54  VEKQWIHTAPDMRAEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI 112
           VE        +    + C V        + W++D   I++  + D        +LL+   
Sbjct: 226 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEF 283

Query: 113 KDTDFGNYMCQASNNLGSSQQFIQLS 138
              D G Y     ++ G  +  ++L 
Sbjct: 284 SKKDAGIYEVILKDDRGKDKSRLKLV 309

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 63.5 bits (154), Expect = 5e-12
 Identities = 12/97 (12%), Positives = 31/97 (31%), Gaps = 1/97 (1%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
            P        +     +     C+    P ++  W +D  +     R+++     K  + 
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPV 145
            + +   D G Y C  ++  G +  ++         +
Sbjct: 62  FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLL 98

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 83.0 bits (205), Expect = 1e-19
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 13/136 (9%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVI--------YPPEVSVEKQWIHTA 62
           +L +  V     G Y C  S+     S    FI  +         YP ++ V+ + ++  
Sbjct: 67  NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL 126

Query: 63  PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
                 + C    NP   + W +    +     I    S+    L + +I+  D G Y C
Sbjct: 127 MGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEI----STSGAVLKIFNIQLEDEGIYEC 182

Query: 123 QASNNLGSSQQFIQLS 138
           +A N  G  +   ++ 
Sbjct: 183 EAENIRGKDKHQARIY 198

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 2/83 (2%)

Query: 67  AEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 124
             ++C+   + P      W  +   + +       VS    +L + +++ +D GNY C  
Sbjct: 26  MVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFV 85

Query: 125 SNNLGSSQQFIQLSGIPNIPVFQ 147
           S+   +   F +   +  IP   
Sbjct: 86  SSPSITKSVFSKFIPLIPIPERT 108

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 81.8 bits (202), Expect = 4e-19
 Identities = 23/152 (15%), Positives = 44/152 (28%), Gaps = 23/152 (15%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-- 66
            +  L ++  T    G Y     +           ++     E   E Q +  A      
Sbjct: 57  EQIWLQINEPTPNDKGKYVMELFDGKTGHQK-TVDLSGQAYDEAYAEFQRLKQAAIAEKN 115

Query: 67  -------------------AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK-HS 106
                                + CNV+ +PP +V W ++  A+      ++   + +   
Sbjct: 116 RARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAY 175

Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
             +  +   D G Y     N  GS      +S
Sbjct: 176 FTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 70.7 bits (173), Expect = 5e-15
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 67  AEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
            ++   V Y     KV W  +G+AI    R+   V+ E+  L +      D G Y+ +  
Sbjct: 20  IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELF 79

Query: 126 NNLGSSQQFIQLSGIPNIPVFQKSSRR 152
           +     Q+ + LSG      + +  R 
Sbjct: 80  DGKTGHQKTVDLSGQAYDEAYAEFQRL 106

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 82.9 bits (204), Expect = 5e-19
 Identities = 21/141 (14%), Positives = 41/141 (29%), Gaps = 12/141 (8%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHTAPD 64
                  +          +C A  +     S  F + V       P VSV +        
Sbjct: 144 KAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKG 203

Query: 65  MRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSE-------KHSLLVRHIKDTD 116
               ++C +   +      W +         ++  +           + +L +   +  D
Sbjct: 204 DTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDD 263

Query: 117 FGNYMCQASNNLGSSQQFIQL 137
            G +MC A+N  GS+     L
Sbjct: 264 SGVFMCYANNTFGSANVTTTL 284

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 73.2 bits (179), Expect = 1e-15
 Identities = 20/159 (12%), Positives = 44/159 (27%), Gaps = 12/159 (7%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 68
            +     ++      G Y C  SN +  S      V V  P ++ +    +    D  A 
Sbjct: 55  KKNEWIQEKAEATRTGTYTCSNSNGLTSSIY----VFVRDPAKLFLVGLPLFGKEDSDAL 110

Query: 69  IICNVYANPPAKVEWFR-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
           + C +     ++      DG ++          + +    +    +        C A  +
Sbjct: 111 VRCPLTDPQVSQYSLIECDGKSLPTDLTF--VPNPKAGITIKNVKRAYHRLCVRCAAQRD 168

Query: 128 LG---SSQQFIQLSGIPNIP--VFQKSSRRLGPDGYRLV 161
                S +  +++         V    +  L   G    
Sbjct: 169 GTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFT 207

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 12/97 (12%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
           PP +   +  +         + C      P  V W             +  V ++K+  +
Sbjct: 12  PPSIHPAQSELIVEAGDTLSLTCID----PDFVRWTFKT-------YFNEMVENKKNEWI 60

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQ-FIQLSGIPNIP 144
               + T  G Y C  SN L SS   F++      + 
Sbjct: 61  QEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLV 97

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 82.8 bits (204), Expect = 6e-19
 Identities = 22/126 (17%), Positives = 45/126 (35%), Gaps = 4/126 (3%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
           SL +  + ++  G Y C+       S S +  + V+  P+ + E Q +    +      C
Sbjct: 80  SLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARC 139

Query: 72  NV-YANPPAKVEWFRDGTAITLGGRIDMHVS---SEKHSLLVRHIKDTDFGNYMCQASNN 127
                 PPA++ W  D   +    ++   +S   +     ++      D  N  C+  + 
Sbjct: 140 VSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHE 199

Query: 128 LGSSQQ 133
                Q
Sbjct: 200 SFEKPQ 205

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 82.8 bits (204), Expect = 7e-19
 Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 9/119 (7%)

Query: 23  AGLYQCIASNNIGEST-SKNFIVNVIYPPEVSVEKQWIHTAP-DMRAEIICNVYANP-PA 79
                C   +   E        + V YPPEVS+     +       A + C+  +NP P 
Sbjct: 189 GKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPT 248

Query: 80  KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
              W          G +     ++   LL+R +        +C  +N LG+ Q  + + 
Sbjct: 249 GYNWSTTM------GPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQ 301

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 20/129 (15%), Positives = 34/129 (26%), Gaps = 33/129 (25%)

Query: 44  VNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP-----AKVEWFRDGTAITLG----- 93
           V V  P +V                + C +          +++ W R G + ++      
Sbjct: 2   VVVQAPTQVPGFL-------GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQT 54

Query: 94  -------------GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN-LGSSQQFIQLSG 139
                            +       SL +  ++  D GNY C       GS    I L  
Sbjct: 55  QGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV 114

Query: 140 I--PNIPVF 146
           +  P     
Sbjct: 115 LAKPQNTAE 123

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 81.3 bits (200), Expect = 6e-19
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 4/128 (3%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
           S+++  + L   G YQC      G   +K F++ V+  P  +              ++ C
Sbjct: 85  SINVTNLQLSDIGTYQCKVKKAPG-VANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKC 143

Query: 72  NVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
                + P + EW +   + T+              + V++      G Y C   N +GS
Sbjct: 144 EPKEGSLPLQFEWQKLSDSQTMPTP--WLAEMTSPVISVKNASSEYSGTYSCTVQNRVGS 201

Query: 131 SQQFIQLS 138
            Q  ++L 
Sbjct: 202 DQCMLRLD 209

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 23/130 (17%), Positives = 41/130 (31%), Gaps = 30/130 (23%)

Query: 51  EVSVEKQWIHTAPDMRAEIICNVYANP----PAKVEWFRDGTAIT--------------- 91
            ++  +Q I  A    A + C    +P    P  +EW    +                  
Sbjct: 2   SITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIY 61

Query: 92  ------LGGRI---DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--GI 140
                 L GR+      V S   S+ V +++ +D G Y C+     G + +   L+    
Sbjct: 62  DNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121

Query: 141 PNIPVFQKSS 150
           P+        
Sbjct: 122 PSGTRCFVDG 131

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 83.6 bits (206), Expect = 6e-19
 Identities = 28/134 (20%), Positives = 42/134 (31%), Gaps = 13/134 (9%)

Query: 12  SLDLDRVTLKL-AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII 70
            L L  VT  L      C A N++G +   +  VNV +P       Q           I 
Sbjct: 213 GLTLANVTSDLNRKNVTCWAENDVGRAE-VSVQVNVSFPAS----VQLHTAVEMHHWCIP 267

Query: 71  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK-------HSLLVRHIKDTDFGNYMCQ 123
            +V   P   + W  +G+ +     I                 L +      + GNY   
Sbjct: 268 FSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLL 327

Query: 124 ASNNLGSSQQFIQL 137
           A+N  G +   I  
Sbjct: 328 AANPFGQASASIMA 341

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 3/116 (2%)

Query: 50  PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLV 109
           P + V+             + C V      +  W       +        + S     L 
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSL-GLTLA 217

Query: 110 RHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVD 165
               D +  N  C A N++G ++  +Q+    + P   +    +    + + + VD
Sbjct: 218 NVTSDLNRKNVTCWAENDVGRAEVSVQV--NVSFPASVQLHTAVEMHHWCIPFSVD 271

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 79.9 bits (197), Expect = 2e-18
 Identities = 32/165 (19%), Positives = 59/165 (35%), Gaps = 19/165 (11%)

Query: 2   KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-----YPPEVSVEK 56
              ++     SL ++ V     G Y C+  N  G S +  + ++V+      P   +   
Sbjct: 67  GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG-SINHTYHLDVVERSRHRPILQAGLP 125

Query: 57  QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRID-----------MHVSSEKH 105
               T      E +C VY++    ++W +           D              SS   
Sbjct: 126 ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAE 185

Query: 106 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--GIPNIPVFQK 148
            L + ++ + D G Y+C+ SN +G + Q   L+       P  +K
Sbjct: 186 VLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 65.7 bits (160), Expect = 3e-13
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 3/111 (2%)

Query: 29  IASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGT 88
           +A + + E+++           ++  EK+          +  C    NP   + W ++G 
Sbjct: 1   MAEDFVSENSNNKRAPYWTNTEKM--EKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGK 58

Query: 89  AITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
                 RI    V ++  SL++  +  +D GNY C   N  GS      L 
Sbjct: 59  EFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 109

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 77.8 bits (191), Expect = 9e-18
 Identities = 20/128 (15%), Positives = 35/128 (27%), Gaps = 5/128 (3%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 68
           N   L +    +   G Y C       E T +   ++V+ P  +SV  +           
Sbjct: 65  NTFFLVVTAANISHDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQFPDFSVLT 123

Query: 69  IICNVYANPPAKVEWFRDGTAITL----GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 124
           + C V A P   V+W              G +           +   +         C  
Sbjct: 124 VTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVG 183

Query: 125 SNNLGSSQ 132
            N+   + 
Sbjct: 184 KNDKEEAH 191

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 53.1 bits (127), Expect = 8e-09
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 17/86 (19%)

Query: 70  ICNVYANPPAKVEWFRDGTAIT-----------------LGGRIDMHVSSEKHSLLVRHI 112
              V   P  +V WF+ G                       G  D+H S+    L+V   
Sbjct: 15  WRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAA 74

Query: 113 KDTDFGNYMCQASNNLGSSQQFIQLS 138
             +  GNY+C+         +   LS
Sbjct: 75  NISHDGNYLCRMKLGETEVTKQEHLS 100

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 78.4 bits (193), Expect = 1e-17
 Identities = 32/154 (20%), Positives = 62/154 (40%), Gaps = 18/154 (11%)

Query: 2   KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-----YPPEVSVEK 56
             I+L + + SL ++ V     G Y C+  N  G    + + ++V+      P   +   
Sbjct: 63  GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGLP 121

Query: 57  QWIHTAPDMRAEIICNVYANPPAKVEWFR-----------DGTAITLGGRIDMHVSSEK- 104
                      E  C VY++    ++W +           DGT      +  +  S E  
Sbjct: 122 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEAD 181

Query: 105 HSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
             L + ++ + D G Y+C+A+N +G +++   LS
Sbjct: 182 VRLRLANVSERDGGEYLCRATNFIGVAEKAFWLS 215

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 62.6 bits (152), Expect = 5e-12
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 9/122 (7%)

Query: 30  ASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTA 89
           A  + G  T   +      P  +  +K+ +           C    NP   + W ++G  
Sbjct: 1   ADPDTGVDTGAPYWTR---PERM--DKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE 55

Query: 90  ITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS---GIPNIPV 145
                RI    +  ++ SL++  +  +D GNY C   N  GS +Q   L      P+ P+
Sbjct: 56  FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPI 115

Query: 146 FQ 147
            Q
Sbjct: 116 LQ 117

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 75.4 bits (185), Expect = 8e-17
 Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 20/146 (13%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS-----------------V 54
            + ++++  +  G Y     +    + S   +V  ++                      V
Sbjct: 62  EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 121

Query: 55  EKQWIHTAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIK 113
           E        +    + C V        + W++D   I++  + D        +LL+    
Sbjct: 122 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFS 179

Query: 114 DTDFGNYMCQASNNLGSSQQFIQLSG 139
             D G Y     ++ G  +  ++L  
Sbjct: 180 KKDAGIYEVILKDDRGKDKSRLKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 61.5 bits (149), Expect = 1e-11
 Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 71  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYMCQASNNL 128
                +  AKV +  +   I  G +  MH+        + +  ++D D G Y  Q  +  
Sbjct: 25  QAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGK 84

Query: 129 GSSQ 132
            ++ 
Sbjct: 85  ATNH 88

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 75.2 bits (184), Expect = 9e-17
 Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 13/143 (9%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV---EKQWIHTAPDM 65
           +++   +    +  AG+  C A  N     S  +IV V+      V       I  +   
Sbjct: 62  SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGE 121

Query: 66  RAEIICNVYANPPAKVE--WFRDGTAITLGGRI--------DMHVSSEKHSLLVRHIKDT 115
           +  + C         ++  W    +       +           +     +L +  +  +
Sbjct: 122 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 181

Query: 116 DFGNYMCQASNNLGSSQQFIQLS 138
           D G Y C AS+ L + +    + 
Sbjct: 182 DQGLYTCAASSGLMTKKNSTFVR 204

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 41.3 bits (96), Expect = 8e-05
 Identities = 14/104 (13%), Positives = 23/104 (22%), Gaps = 3/104 (2%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
                    +I    +    I C   +     V               +      K    
Sbjct: 9   SVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT 67

Query: 109 VRHIKDTDFGNYMCQASNNLGS--SQQFIQLSGIPNIPVFQKSS 150
           +     +  G   C+A  N  S  S  +I +     I     S 
Sbjct: 68  IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSP 111

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 77.5 bits (190), Expect = 1e-16
 Identities = 40/247 (16%), Positives = 73/247 (29%), Gaps = 26/247 (10%)

Query: 8   YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQW----IHTAP 63
           +NR  L +         +   + ++   +       V V+  P            +    
Sbjct: 120 WNRAELAISTFWPNFYQVIFEVITSG-HQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNA 178

Query: 64  DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS---LLVRHIKDTDFGNY 120
              A   C+      A    +  G  +      ++ V+S +       V +    D G Y
Sbjct: 179 GQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKY 238

Query: 121 MCQASNNLGS--SQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG---IIQYLL 175
            C      G   S     +   P +P+       +G     +    ++ +G   I+   +
Sbjct: 239 RCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREV 298

Query: 176 KFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNR--FGWSRPS 233
           ++        W +           P+ + SY I  L   T+YE SVL       G   P 
Sbjct: 299 EY--CTASGSWNDRQ---------PVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPG 347

Query: 234 KAYVFAT 240
            A    T
Sbjct: 348 PALRTRT 354

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 53.6 bits (128), Expect = 2e-08
 Identities = 29/256 (11%), Positives = 62/256 (24%), Gaps = 44/256 (17%)

Query: 13  LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV------------SVEKQWIH 60
            ++   T + AG Y+C+     G   S    + V  PP               +  Q   
Sbjct: 225 FNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNA 284

Query: 61  TAPDMRAEIIC-NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIK-DTDFG 118
            + +    I+   V                    G  +     +  S  + H+  DT++ 
Sbjct: 285 NSINGDGPIVAREVEYCTA--------------SGSWNDRQPVDSTSYKIGHLDPDTEY- 329

Query: 119 NYMCQASNNLGS-------SQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQ---VDTYS 168
                 +            + +       P     +     +      + W+    +   
Sbjct: 330 EISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTR 389

Query: 169 GIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
                  + +  +          +  D           + IT L  +T     ++  N  
Sbjct: 390 CHSYNLTVHYCYQVGGQEQVREEVSWD----TENSHPQHTITNLSPYTNVSVKLILMNPE 445

Query: 228 GWSRPSKAYVFATEGA 243
           G     +  V   E  
Sbjct: 446 GRKESQELIVQTDEDL 461

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 45.5 bits (107), Expect = 7e-06
 Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 7/127 (5%)

Query: 123 QASNNLG---SSQQFIQ-LSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG--IIQYLLK 176
              N  G   S +  +Q    +P     +        +   L W+  T +   I  Y + 
Sbjct: 440 ILMNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEIT 499

Query: 177 FREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAY 236
           ++      P  ++   S G ++       +   GL   T Y  ++ A    G+  P+   
Sbjct: 500 YKAVSSFDPEIDLSNQS-GRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQ 558

Query: 237 VFATEGA 243
                 A
Sbjct: 559 FTTKISA 565

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 74.7 bits (183), Expect = 2e-16
 Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 6/144 (4%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
           +L +  V L+ AG+Y+C+ S   G +  K   V V  P     ++  +        E+ C
Sbjct: 81  ALQITDVKLQDAGVYRCMISY--GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTC 138

Query: 72  NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVR---HIKDTDFGNYMCQASNNL 128
                P A+V W      +  G     +   E+    V     I  T    + C      
Sbjct: 139 QAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLD 198

Query: 129 GSSQQFIQLSGIPNIPVFQKSSRR 152
                  +L  IP +P+    + R
Sbjct: 199 PEENHTAELV-IPELPLAHPPNER 221

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 71.6 bits (176), Expect = 2e-16
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 8/98 (8%)

Query: 35  GESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG 94
           G S S           EV  +   +      +A   C V ++     +W+++G  +    
Sbjct: 1   GSSGSS-------GQLEVLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSK 52

Query: 95  RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
           RI +      H L++  ++  D G+Y         S  
Sbjct: 53  RITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSLS 90

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 75.8 bits (186), Expect = 2e-16
 Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 19/153 (12%)

Query: 4   IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-----YPPEVSVEKQW 58
           I+L + + SL ++ V     G Y C+  N  G S  + + ++V+      P   +     
Sbjct: 173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFG-SIRQTYTLDVLERSPHRPILQAGLPAN 231

Query: 59  IHTAPDMRAEIICNVYANPPAKVEWFR----DGTAITLGGRIDMHV---------SSEKH 105
                    E  C VY++    ++W +    +G+ +   G   + V           E  
Sbjct: 232 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE 291

Query: 106 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
            L + ++   D G Y C A N++G S     L 
Sbjct: 292 VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 75.0 bits (184), Expect = 5e-16
 Identities = 26/152 (17%), Positives = 48/152 (31%), Gaps = 25/152 (16%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN--------------------VIYPPE 51
            L +   + + +G Y C            +  V                         P 
Sbjct: 62  RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPY 121

Query: 52  VS----VEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRID-MHVSSEKHS 106
            +    ++K+ +           C    NP   + W ++G       RI  + +  ++ S
Sbjct: 122 WTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWS 181

Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
           L++  +  +D GNY C   N  GS +Q   L 
Sbjct: 182 LVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 213

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 5/90 (5%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSL 107
           P     +++ +        E+ C      P     W +DGT +    R+ +        L
Sbjct: 8   PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG----PQRL 63

Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
            V +    D G Y C+          F   
Sbjct: 64  QVLNASHEDSGAYSCRQRLTQRVLCHFSVR 93

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE 55
             E L L  VT + AG Y C+A N+IG S   +  + V+   E  VE
Sbjct: 289 ELEVLSLHNVTFEDAGEYTCLAGNSIGFSHH-SAWLVVLPAEEELVE 334

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 73.9 bits (181), Expect = 3e-16
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 2/128 (1%)

Query: 5   ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD 64
           E++Y+  SL    +T+K  G+Y    ++     T      +V  P      +    T  +
Sbjct: 65  EIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKE 124

Query: 65  MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 124
           + +  +  +  +  A ++W  +  ++ L  R  M +S     L +  IK  D G Y C+ 
Sbjct: 125 LDSVTLTCLSNDIGANIQWLFNSQSLQLTER--MTLSQNNSILRIDPIKREDAGEYQCEI 182

Query: 125 SNNLGSSQ 132
           SN +   +
Sbjct: 183 SNPVSVRR 190

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 51.2 bits (122), Expect = 4e-08
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 4   IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 51
           + L  N   L +D +  + AG YQC  SN +    S +  +++I+ P 
Sbjct: 156 MTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH 203

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 70.5 bits (173), Expect = 5e-16
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 10/105 (9%)

Query: 46  VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH 105
           V + P ++  +       D    I   V  NP   ++WF +G  +     I   +    H
Sbjct: 1   VHFAPTITFLESPT---SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57

Query: 106 -----SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--GIPNI 143
                 L + +    + G+Y   A N  G  ++ I     G P I
Sbjct: 58  TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV 52
            L LD  T    G Y  IA N  G+   K    + +  P +
Sbjct: 63  CLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFMGWPGI 102

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 74.8 bits (183), Expect = 5e-16
 Identities = 28/148 (18%), Positives = 47/148 (31%), Gaps = 22/148 (14%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIY------PPEVSVEKQWIHTA 62
            L +  V  K  G Y C AS          ++      +       P  VS   + +   
Sbjct: 163 RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVD 222

Query: 63  PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI------------DMHVSSEKHSLLVR 110
              + ++ICNV         W  +G+ I     +            +   S+    L + 
Sbjct: 223 LGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNIS 282

Query: 111 HIKDTDF-GNYMCQASNNLGSSQQFIQL 137
            I+   +   + C A N  G    +IQL
Sbjct: 283 EIESRFYKHPFTCFAKNTHGIDAAYIQL 310

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 72.1 bits (176), Expect = 5e-15
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 14/134 (10%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIHT---APD 64
           ++E L      ++ +G Y C+  N+             +   P +    Q I        
Sbjct: 60  HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRI-KISAKFVENEPNLCYNAQAIFKQKLPVA 118

Query: 65  MRAEIICNVYA------NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 118
               ++C          N   K++W++D   + L      H S  K  L+V ++ +   G
Sbjct: 119 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI---HFSGVKDRLIVMNVAEKHRG 175

Query: 119 NYMCQASNNLGSSQ 132
           NY C AS      Q
Sbjct: 176 NYTCHASYTYLGKQ 189

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 58.2 bits (140), Expect = 4e-10
 Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 1/82 (1%)

Query: 71  CNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
           C +  N     + W++D +   +       +   K  L     K  D G+Y C   N+  
Sbjct: 27  CPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSY 86

Query: 130 SSQQFIQLSGIPNIPVFQKSSR 151
             +  I    + N P    +++
Sbjct: 87  CLRIKISAKFVENEPNLCYNAQ 108

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 70.7 bits (173), Expect = 7e-16
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 9/110 (8%)

Query: 37  STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGR 95
           S+  +  + V  PP +S  +   H     + +I C + + P P ++ W      +  G  
Sbjct: 2   SSGSSGTLTVNGPPIISSTQT-QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTS 60

Query: 96  IDMHVSSE------KHSLLVRHIKDTDFG-NYMCQASNNLGSSQQFIQLS 138
               V +         +L + +I   DF   Y C A N+ GS  + I+L 
Sbjct: 61  GRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 71.9 bits (176), Expect = 9e-16
 Identities = 19/139 (13%), Positives = 39/139 (28%), Gaps = 23/139 (16%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
            L +  + ++ +  Y C   +   E     F   +    +  +              +  
Sbjct: 69  PLIIKNLKIEDSDTYICEVEDQKEEVQLLVF--GLTANSDTHLL-------QGQSLTLTL 119

Query: 72  NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
                    V+          GG+          +L V  ++  D G + C    N    
Sbjct: 120 ESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKV 169

Query: 132 QQFIQLSGIPNIPVFQKSS 150
           +  I +     +  FQK+S
Sbjct: 170 EFKIDIV----VLAFQKAS 184

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 18/105 (17%)

Query: 67  AEIICNVYANPPAKVEWFRDGTAITLGG--------------RIDMHVSSEKH---SLLV 109
            E+ C        +  W        LG               R D   S        L++
Sbjct: 13  VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 72

Query: 110 RHIKDTDFGNYMCQASNNLGSSQ-QFIQLSGIPNIPVFQKSSRRL 153
           +++K  D   Y+C+  +     Q     L+   +  + Q  S  L
Sbjct: 73  KNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTL 117

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 7/49 (14%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 5   ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 53
           + +   ++L + ++ L+ +G + C    N          + V+   + S
Sbjct: 137 KNIQGGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVLAFQKAS 184

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 74.5 bits (182), Expect = 1e-15
 Identities = 20/135 (14%), Positives = 44/135 (32%), Gaps = 18/135 (13%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGEST---SKNFIVNVIYPP--EVSVEKQWIHTAP 63
            R  L L          + C A+  +       ++   + V+Y P  +            
Sbjct: 325 PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPE 384

Query: 64  DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
           + +   +C  + NP  +++  +DGT     G                 +     G Y+C+
Sbjct: 385 NSQQTPMCQAWGNPLPELKCLKDGTFPLPIGES-------------VTVTRDLEGTYLCR 431

Query: 124 ASNNLGSSQQFIQLS 138
           A +  G   + + ++
Sbjct: 432 ARSTQGEVTREVTVN 446

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 60.3 bits (145), Expect = 1e-10
 Identities = 16/112 (14%), Positives = 31/112 (27%), Gaps = 8/112 (7%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIYPPE-VSVEKQWIHTAPDMRAEIICNVYANPPA-- 79
                C ++      ++    + V + PE V +              + C V    P   
Sbjct: 60  DSQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118

Query: 80  -KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
             V   R    +    R        + +  V   +D    N+ C+   +L  
Sbjct: 119 LTVVLLRGEKEL---KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRP 167

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 52.6 bits (125), Expect = 4e-08
 Identities = 10/114 (8%), Positives = 27/114 (23%), Gaps = 15/114 (13%)

Query: 26  YQCIASNNIGE-STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWF 84
             C          T +   +     P V + K  +         + C  +      +   
Sbjct: 261 LTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVS--EGTEVTVKCEAHPRAKVTLNGV 318

Query: 85  RDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
                              +  LL++   + +  ++ C A+  +         +
Sbjct: 319 PAQP------------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQT 360

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 48.3 bits (114), Expect = 9e-07
 Identities = 17/127 (13%), Positives = 36/127 (28%), Gaps = 12/127 (9%)

Query: 23  AGLYQCIASNNIG-------ESTSKNFIVNVIYPPEVSVEKQWIHTAP-DMRAEIICNVY 74
              + C    ++        E+TS  + +     P    +         D +  ++C++ 
Sbjct: 154 GANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD 213

Query: 75  ANPP---AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
              P   A+V        +           S K S+ V   +D       C       S 
Sbjct: 214 GLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT-AEDEGTQRLTCAVILGNQSQ 272

Query: 132 QQFIQLS 138
           +    ++
Sbjct: 273 ETLQTVT 279

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 43.7 bits (102), Expect = 3e-05
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 11  ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 49
              +   VT  L G Y C A +  G   ++   VNV+ P
Sbjct: 413 PIGESVTVTRDLEGTYLCRARSTQG-EVTREVTVNVLSP 450

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 69.3 bits (170), Expect = 1e-15
 Identities = 16/89 (17%), Positives = 32/89 (35%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
              +  + + +       A   C+    P   V W R G  ++   R  +  +  K +  
Sbjct: 14  AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
           +  ++ +D GNY     N+ G  +    L
Sbjct: 74  ISSVQASDEGNYSVVVENSEGKQEAEFTL 102

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 68.1 bits (167), Expect = 3e-15
 Identities = 15/89 (16%), Positives = 28/89 (31%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
            P++    + I         +  +    P     W    +   L   + +   S   S+ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
               K  D GNY  +  N LG  +   ++
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEV 90

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 68.7 bits (168), Expect = 4e-15
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 44  VNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE 103
           + V YPP V   ++       +   I   V  NPP  + W  +G  +     I +    E
Sbjct: 3   LTVYYPPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQE 59

Query: 104 KH----SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
                  LL       + GNY   A N LG++ Q I   
Sbjct: 60  GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 98

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 37.5 bits (87), Expect = 6e-04
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
            L  ++ T    G Y  IA N +G   ++    + +  P
Sbjct: 66  CLLFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEP 103

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 72.6 bits (177), Expect = 4e-15
 Identities = 28/166 (16%), Positives = 51/166 (30%), Gaps = 26/166 (15%)

Query: 7   LYNRESLDLDRVTLKLAGLYQCIAS---NNIGESTSKNFIVNVIYPPEVSV--------E 55
           +    +L      +   G Y C+ +   N      ++   V V+  P+ +V        +
Sbjct: 173 IPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPND 232

Query: 56  KQWIHTAPDMRAEIICNVY----ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS----- 106
                  P     I C VY     +   +V W  DG              S  HS     
Sbjct: 233 HVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDE 292

Query: 107 -----LLVRHIKDTDFG-NYMCQASNNLGSSQQFIQLSGIPNIPVF 146
                L ++ +   D   +Y+C A +  G   +  ++      P +
Sbjct: 293 TRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPRY 338

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 64.5 bits (156), Expect = 3e-12
 Identities = 17/130 (13%), Positives = 31/130 (23%), Gaps = 14/130 (10%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRA---- 67
            L      L   G Y C+  N    S    F + V+           +            
Sbjct: 80  VLWFRPTLLNDTGNYTCMLRNTTYCSKV-AFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQ 138

Query: 68  -----EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
                 +     ++    + W+     I     +      E  +L       ++ GNY C
Sbjct: 139 RITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIP----EGMNLSFLIALISNNGNYTC 194

Query: 123 QASNNLGSSQ 132
             +       
Sbjct: 195 VVTYPENGRT 204

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 49.9 bits (118), Expect = 2e-07
 Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 5/95 (5%)

Query: 62  APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM-----HVSSEKHSLLVRHIKDTD 116
             +   +   +   +    + W+       L   I+       +S EK  L  R     D
Sbjct: 31  LFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLND 90

Query: 117 FGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSR 151
            GNY C   N    S+    L  +     F    +
Sbjct: 91  TGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMK 125

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 72.0 bits (176), Expect = 6e-15
 Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 9/134 (6%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK--QWIHTAPDMRAEI 69
           +L L     + +G Y C   N        +  + V    +  +                +
Sbjct: 82  ALWLLPALQEDSGTYVCTTRNASYC-DKMSIELRVFENTDAFLPFISYPQILTLSTSGVL 140

Query: 70  ICN-----VYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 124
           +C             K++W++D   +       + V      LLV  +   D G Y C  
Sbjct: 141 VCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGT-THLLVHDVALEDAGYYRCVL 199

Query: 125 SNNLGSSQQFIQLS 138
           +      Q  I  S
Sbjct: 200 TFAHEGQQYNITRS 213

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 67.8 bits (165), Expect = 2e-13
 Identities = 25/154 (16%), Positives = 51/154 (33%), Gaps = 25/154 (16%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVI-----YPPEVSVEKQWIH 60
               L +  V L+ AG Y+C+ +        + +++  + +        P +    + I 
Sbjct: 178 GTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTIS 237

Query: 61  TAPDMRAEIICNVYA---NPPAKVEWFR----------DGTAITLGGRIDMHVSSEK--- 104
            +   R  I C V+     P   + W+            G  +T G R +   ++E    
Sbjct: 238 ASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIE 297

Query: 105 HSLLVRHIKDTDFG-NYMCQASNNLGSSQQFIQL 137
             L+   +   D   ++ C   N L        +
Sbjct: 298 VPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 58.5 bits (141), Expect = 3e-10
 Identities = 13/68 (19%), Positives = 28/68 (41%)

Query: 71  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
                +P   + W ++ +A T+ G  +  + ++  +L +      D G Y+C   N    
Sbjct: 47  LWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYC 106

Query: 131 SQQFIQLS 138
            +  I+L 
Sbjct: 107 DKMSIELR 114

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 71.2 bits (174), Expect = 6e-15
 Identities = 17/120 (14%), Positives = 41/120 (34%), Gaps = 18/120 (15%)

Query: 24  GLYQCIASNNIG---ESTSKNFIVNVIYPPEVSVEK--QWIHTAPDMRAEIICNVYANPP 78
             + C A+  +       ++   + V+Y P +             + +   +C  + NP 
Sbjct: 155 RSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPL 214

Query: 79  AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
            +++  +DGT     G                 +     G Y+C+A +  G   + + ++
Sbjct: 215 PELKCLKDGTFPLPIGES-------------VTVTRDLEGTYLCRARSTQGEVTREVTVN 261

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 50.8 bits (121), Expect = 8e-08
 Identities = 10/111 (9%), Positives = 27/111 (24%), Gaps = 15/111 (13%)

Query: 23  AGLYQCIASNNIGE-STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKV 81
                C          T +   +     P V + K  +  +      + C  +      +
Sbjct: 73  TQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV--SEGTEVTVKCEAHPRAKVTL 130

Query: 82  EWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
                                 +  LL++   + +  ++ C A+  +    
Sbjct: 131 NGVPAQP------------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQL 169

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 11  ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 49
              +   VT  L G Y C A +  G   ++   VNV+ P
Sbjct: 228 PIGESVTVTRDLEGTYLCRARSTQG-EVTREVTVNVLSP 265

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 72.1 bits (176), Expect = 7e-15
 Identities = 19/187 (10%), Positives = 49/187 (26%), Gaps = 22/187 (11%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
            L +  + ++ +  Y C   +   E      +  +    +  +              +  
Sbjct: 68  PLIIKNLKIEDSDTYICEVEDQKEEVQLL--VFGLTANSDTHLL-------QGQSLTLTL 118

Query: 72  NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 131
                    V+          GG+          +L V  ++  D G + C    N    
Sbjct: 119 ESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKV 168

Query: 132 QQFIQLSGIPNIPVFQKSSRRLG---PDGYRLVWQVDTYSGIIQYLLKFREREELTPWRN 188
           +  I +  +          ++ G      + L + V+  +G  +   +         W  
Sbjct: 169 EFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWIT 228

Query: 189 IVIPSDG 195
             + +  
Sbjct: 229 FDLKNKE 235

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 61.4 bits (148), Expect = 4e-11
 Identities = 17/154 (11%), Positives = 40/154 (25%), Gaps = 21/154 (13%)

Query: 5   ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSK-NFIVNVIYPPEVSVEKQWIHTAP 63
           + +   ++L + ++ L+ +G + C    N  +   K + +V         V K+      
Sbjct: 136 KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVE 195

Query: 64  DMRAEIICNVYANPPAKVEWFRDGTA-------ITLGGRIDMHVSSEKH----------- 105
                           ++ W  +  +         L  +        +            
Sbjct: 196 FSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPL 255

Query: 106 --SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
             +L     +    GN         G   Q + L
Sbjct: 256 HLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 50.6 bits (120), Expect = 1e-07
 Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 18/102 (17%)

Query: 67  AEIICNVYANPPAKVEWFRDGTAITLGG--------------RIDMHVSSEKH---SLLV 109
            E+ C        +  W        LG               R D   S        L++
Sbjct: 12  VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 71

Query: 110 RHIKDTDFGNYMCQASNNLGSSQ-QFIQLSGIPNIPVFQKSS 150
           +++K  D   Y+C+  +     Q     L+   +  + Q  S
Sbjct: 72  KNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQS 113

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 45.6 bits (107), Expect = 7e-06
 Identities = 14/120 (11%), Positives = 33/120 (27%), Gaps = 29/120 (24%)

Query: 12  SLDLDRVTLKLA--GLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEI 69
            L L +   + A  G          G+   +   + V+              A  ++  +
Sbjct: 256 HLTLPQALPQYAGSGNLTLALEAKTGK-LHQEVNLVVM-------------RATQLQKNL 301

Query: 70  ICNVYANPPAKVE--WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
            C V+     K+      +     +  R                + + + G + C  S++
Sbjct: 302 TCEVWGPTSPKLMLSLKLENKEAKVSKR-----------EKAVWVLNPEAGMWQCLLSDS 350

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 67.4 bits (165), Expect = 8e-15
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 40  KNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMH 99
           +   V     P ++   +   T+     E+ C    NPP ++ WF+D   +     I   
Sbjct: 1   RQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGI--V 58

Query: 100 VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
           +     +L +R ++  D G Y CQA + LG ++
Sbjct: 59  LKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAK 91

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 37.3 bits (87), Expect = 7e-04
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 4   IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 53
           I L     +L + RV  +  GLY C A + +G +  + F   +    E +
Sbjct: 57  IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAF-FIIEGAQEKT 105

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 67.4 bits (165), Expect = 9e-15
 Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 2/82 (2%)

Query: 67  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
            E+   V    P    W +    I     + +  S     L +   +    G Y     N
Sbjct: 25  VELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN 84

Query: 127 NLGSSQQFIQLS--GIPNIPVF 146
            LGS Q  + L+    P+ P  
Sbjct: 85  KLGSRQAQVNLTVVDKPDPPAG 106

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 66.9 bits (164), Expect = 1e-14
 Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 1/88 (1%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
           P  +    +    AP    E+ C + +     V W +D  AI    + D+        L+
Sbjct: 8   PAAIIKPLEDQWVAPGEDVELRCEL-SRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLV 66

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
           +R     D G Y C+   +  ++   ++
Sbjct: 67  IRGASLKDAGEYTCEVEASKSTASLHVE 94

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 68.0 bits (166), Expect = 2e-14
 Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 4/114 (3%)

Query: 23  AGLYQCIASNNIGESTS---KNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA 79
           +     I +N +    +   +         P  +     +       A   C V   P  
Sbjct: 12  SSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDP 71

Query: 80  KVEWFRDGTAITLGGRIDMHVSSE-KHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
           +V WF+D   +       +    E   SL +  +   D   Y C+A N+LG + 
Sbjct: 72  EVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEAT 125

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 68.4 bits (167), Expect = 2e-14
 Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 23/142 (16%)

Query: 1   EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGEST-SKNFIVNVIYP---PEVSVEK 56
           EK+   L+   +L +  +      +Y+    +  G++   K F + +      P++S   
Sbjct: 56  EKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTC 115

Query: 57  QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTD 116
                       + C V      ++  ++DG  + L  R           ++      + 
Sbjct: 116 I--------NTTLTCEVMNGTDPELNLYQDGKHLKLSQR-----------VITHKWTTSL 156

Query: 117 FGNYMCQASNNLGSSQQFIQLS 138
              + C A N +        +S
Sbjct: 157 SAKFKCTAGNKVSKESSVEPVS 178

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 65.8 bits (161), Expect = 3e-14
 Identities = 17/89 (19%), Positives = 35/89 (39%)

Query: 44  VNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE 103
             + + P +++  +            I NV + P A+V+W+ +G  +    +I    +S 
Sbjct: 3   FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG 62

Query: 104 KHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
             +L +      D G Y    +N  G + 
Sbjct: 63  VLTLEILDCHTDDSGTYRAVCTNYKGEAS 91

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 65.5 bits (160), Expect = 3e-14
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 35  GESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG 94
           G S S      V++  E    ++ +       A + C V A    +V W++DG  ++   
Sbjct: 1   GSSGSS---GKVVFAKEQPAHRE-VQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSS 55

Query: 95  RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
           ++ +        L+V+     + G Y C+A     S
Sbjct: 56  KVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLS 91

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 65.0 bits (159), Expect = 4e-14
 Identities = 21/84 (25%), Positives = 30/84 (35%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
            P +    Q    + D  A+        P     W +DG AIT GG+  +        L 
Sbjct: 6   KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLE 65

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQ 132
           +     +D G Y C   N+ GS  
Sbjct: 66  IHKTDTSDSGLYTCTVKNSAGSVS 89

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 68.8 bits (168), Expect = 5e-14
 Identities = 18/145 (12%), Positives = 44/145 (30%), Gaps = 15/145 (10%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 68
           +  S  +   ++  +G Y+C    +     S    + +     + ++             
Sbjct: 46  STPSYRITSASVNDSGEYRCQRGLS---GRSDPIQLEIHRGW-LLLQVSSRVFTEGEPLA 101

Query: 69  IICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
           + C+ + +     V ++R+G A                +L +     +  G Y C     
Sbjct: 102 LRCHAWKDKLVYNVLYYRNGKAF--------KFFHWNSNLTILKTNISHNGTYHCSGMGK 153

Query: 128 LG--SSQQFIQLSGIPNIPVFQKSS 150
               S+   + +  +   PV   S 
Sbjct: 154 HRYTSAGISVTVKELFPAPVLNASV 178

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 63.4 bits (154), Expect = 4e-12
 Identities = 16/138 (11%), Positives = 36/138 (26%), Gaps = 14/138 (10%)

Query: 2   KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIYPPEVSVEKQWIH 60
           K  +  +   +L + +  +   G Y C         S   +  V  ++P  V        
Sbjct: 122 KAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSP 181

Query: 61  TAPDMRAEIICNVYANPPA-----KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT 115
                   + C                ++     +           +      +   +  
Sbjct: 182 LLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTL--------RGRNTSSEYQILTARRE 233

Query: 116 DFGNYMCQASNNLGSSQQ 133
           D G Y C+A+   G+  +
Sbjct: 234 DSGLYWCEAATEDGNVLK 251

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 51.5 bits (123), Expect = 5e-08
 Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 11/101 (10%)

Query: 50  PEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
             ++++  W+    +    + C V   P  +  +WF +GTA            +   S  
Sbjct: 2   AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTAT----------QTSTPSYR 51

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKS 149
           +      D G Y CQ   +  S    +++     +      
Sbjct: 52  ITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSR 92

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 67.2 bits (164), Expect = 5e-14
 Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 13/129 (10%)

Query: 5   ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD 64
            +  + +     +     +G Y C        S S    + V++   V           +
Sbjct: 45  LIPTHTQPSYRFKANNNDSGEYTCQTGQT---SLSDPVHLTVLFEWLVLQTPHLEFQEGE 101

Query: 65  MRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
               + C+ + + P  KV +F++G +           S    +  +     +  G+Y C 
Sbjct: 102 T-IMLRCHSWKDKPLVKVTFFQNGKSQ--------KFSHLDPTFSIPQANHSHSGDYHCT 152

Query: 124 ASNNLGSSQ 132
            +       
Sbjct: 153 GNIGYTLFS 161

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 54.4 bits (131), Expect = 2e-09
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 11/97 (11%)

Query: 50  PEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
             + +E  WI+   +    + C    +P    ++WF +G  I           +      
Sbjct: 5   AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLI----------PTHTQPSY 54

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPV 145
                + D G Y CQ      S    + +     +  
Sbjct: 55  RFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQ 91

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 7/45 (15%), Positives = 16/45 (35%)

Query: 2   KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
           K  +  +   +  + +     +G Y C  +      +SK   + V
Sbjct: 125 KSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 64.7 bits (158), Expect = 6e-14
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 9/84 (10%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
             ++ VE +    AP     + C V A P  ++ W +DG  + L              L+
Sbjct: 10  EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPS---------PVLI 60

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQ 132
           +  I   D G Y C A+++    Q
Sbjct: 61  LPEIGPQDQGTYSCVATHSSHGPQ 84

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 39.7 bits (93), Expect = 7e-05
 Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 12 SLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYP 49
           L L  +  +  G Y C+A+++      S+   +++I P
Sbjct: 58 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 65.1 bits (159), Expect = 7e-14
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 2/88 (2%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
           P   + + +    +    A + C +  +  A VEW +    +  GGR  +     +  L 
Sbjct: 8   PARFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQ 65

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
           +  +   D G Y C       S+   ++
Sbjct: 66  IHDLSVADAGEYSCMCGQERTSATLTVR 93

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 64.3 bits (157), Expect = 8e-14
 Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 60  HTAPD-MRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF 117
               +    + +C +       +V W+     +    + ++        L V+ I   D 
Sbjct: 11  AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDD 70

Query: 118 GNYMCQASNNLGSSQQFIQLS 138
           G Y C+  N+ G    + +L 
Sbjct: 71  GTYRCKVVNDYGEDSSYAELF 91

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 67.6 bits (164), Expect = 1e-13
 Identities = 23/158 (14%), Positives = 40/158 (25%), Gaps = 29/158 (18%)

Query: 10  RESLDLDRVTLKLAGLYQCIASNNIG------ESTSKNFIVNVIYP--PEVSVEKQWIHT 61
             +L L  V  +  G Y C  +          ++ S    V    P         + +  
Sbjct: 89  APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQV 148

Query: 62  APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH---------------- 105
                  + C       A V W+   T             + K+                
Sbjct: 149 DEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRAS 208

Query: 106 -----SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
                +L++R  K TD G   C+ +   G        +
Sbjct: 209 FSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST 246

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 63.7 bits (155), Expect = 1e-13
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
           P  V VE + +   P    ++ C +  +    + W RDG  +    R  +        + 
Sbjct: 9   PWGVPVEVESLLVHPGDLLQLRCRL-RDDVQSINWLRDGVQLVESNRTRI----TGEEVE 63

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
           VR     D G Y C  S+  GS   +  ++
Sbjct: 64  VRDSIPADSGLYACVTSSPSGSDTTYFSVN 93

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 40.6 bits (95), Expect = 4e-05
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
           E +++       +GLY C+ S+  G  T+  F VNV
Sbjct: 59 GEEVEVRDSIPADSGLYACVTSSPSGSDTT-YFSVNV 94

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 64.0 bits (156), Expect = 1e-13
 Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 5/100 (5%)

Query: 37  STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI 96
           S+  +    ++YP      K ++      R  + C +   P A+V W +DG  +     +
Sbjct: 5   SSGTDVSSWIVYPSG----KVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPAL 59

Query: 97  DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
            +        L++  ++  D G Y+C+  +   S    + 
Sbjct: 60  LLQKEDTVRRLVLPAVQLEDSGEYLCEIDDESASFTVTVT 99

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 63.6 bits (155), Expect = 2e-13
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 8/88 (9%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
            P   V+K         R   +  + A+P  +V+W+++G  I    +        +  L 
Sbjct: 15  DPAYQVDK-------GGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILF 66

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
           + + + TD   Y   A +   S++ F++
Sbjct: 67  INNCQMTDDSEYYVTAGDEKCSTELFVR 94

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 65.7 bits (159), Expect = 3e-13
 Identities = 23/152 (15%), Positives = 41/152 (26%), Gaps = 28/152 (18%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGE-----------STSKNFIVNVIYPPEVSVEKQ 57
           +++  +L        G+YQC  S N  +             +K          +   +K 
Sbjct: 47  DKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKD 106

Query: 58  WIHTAPDM---------------RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS 102
                 +M                  + C  Y  P +++ W  +   I          S 
Sbjct: 107 GSDGNEEMGGITQTPYKVSISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSD 164

Query: 103 EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 134
           E H  L    +    G Y+C    +      F
Sbjct: 165 EDHLSLKEFSELEQSGYYVCYPRGSKPEDANF 196

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 41.4 bits (96), Expect = 8e-05
 Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 71  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
           C+        + WF+DG  I          +      L  + KD   G Y C+ S N   
Sbjct: 25  CDA---EAKNITWFKDGKMIGFLTEDKKKWN------LGSNAKD-PRGMYQCKGSQNKSK 74

Query: 131 SQQFIQLSGIPNIPVFQKSSRRLGP 155
             Q     G  +      + +    
Sbjct: 75  PLQVYYRMGSADDAKKDAAKKDDAK 99

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 62.8 bits (153), Expect = 3e-13
 Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
                VE +     P    ++ C +  +    + W RDG  +    R  +        + 
Sbjct: 3   SGSSGVEVESFLVHPGDLLQLRCRLRDDVQ-SINWLRDGVQLAESNRTRI----TGEEVE 57

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIP 144
           V+     D G Y C  S+  GS   +  ++    +P
Sbjct: 58  VQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 40.1 bits (94), Expect = 5e-05
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 9  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 51
            E +++       +GLY C+ S+  G  T+  F VNV     
Sbjct: 52 TGEEVEVQDSVPADSGLYACVTSSPSGSDTT-YFSVNVSDALP 93

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 63.6 bits (155), Expect = 3e-13
 Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 4/112 (3%)

Query: 30  ASNNIGESTSKNFIVNVIYPPEVSVE---KQWIHTAPDMRAEIICNVYANPPAKVEWFRD 86
           +S + G       I  +  PP++ +    +Q        +  ++      P  +V W + 
Sbjct: 2   SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG 61

Query: 87  GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
           G  +    R+ +  S       VR    +D G Y              I++ 
Sbjct: 62  GAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 63.1 bits (154), Expect = 3e-13
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 67  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE-KHSLLVRHIKDTDFGNYMCQAS 125
             +   V   P   V W+ +G  +       M VS +  HSL+   ++ +D G Y C A 
Sbjct: 23  CRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAK 82

Query: 126 NNLGSSQQFIQLS 138
           N  G +   +QL 
Sbjct: 83  NRAGEATFTVQLD 95

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 65.7 bits (160), Expect = 3e-13
 Identities = 21/141 (14%), Positives = 43/141 (30%), Gaps = 16/141 (11%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 68
              S  +D  T+  +G Y+C    +   + S    + V     +    +W+    D    
Sbjct: 52  QASSYFIDAATVDDSGEYRCQTQLS---TLSDPVQLEVHIGWLLLQAPRWVFKEED-PIH 107

Query: 69  IICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
           + C+ + N    KV + ++G                     +      D G+Y C+    
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKGR--------KYFHHNSDFYIPKATLKDSGSYFCRGLVG 159

Query: 128 LG---SSQQFIQLSGIPNIPV 145
                S    I ++    +  
Sbjct: 160 SKNVSSETVQITITQGLAVST 180

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 11/97 (11%)

Query: 50  PEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
             V +E QW          + C    +P     +WF + + I          SS+  S  
Sbjct: 8   AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLI----------SSQASSYF 57

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPV 145
           +      D G Y CQ   +  S    +++     +  
Sbjct: 58  IDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQ 94

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 10/53 (18%), Positives = 20/53 (37%)

Query: 2   KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV 54
           K  +  ++     + + TLK +G Y C         +S+   + +     VS 
Sbjct: 128 KGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVST 180

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 62.8 bits (153), Expect = 4e-13
 Identities = 10/89 (11%), Positives = 25/89 (28%), Gaps = 1/89 (1%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSL 107
              ++   + +           C + + +      W   G  +    R        K+ L
Sbjct: 8   HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYIL 67

Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
           +VR    +D G  +         +   ++
Sbjct: 68  VVREAAPSDAGEVVFSVRGLTSKASLIVR 96

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 61.9 bits (151), Expect = 5e-13
 Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 66  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
            A     + + P    +W   G  +      ++    +KH L++ + +    G    QA+
Sbjct: 22  TAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAA 80

Query: 126 NNLGSSQ 132
           N   ++ 
Sbjct: 81  NTKSAAN 87

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 62.0 bits (151), Expect = 7e-13
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 3/90 (3%)

Query: 49  PPEVSV--EKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS 106
           P  +    +K  +      R  + C + +       W++DG  +     + + +   KH 
Sbjct: 8   PVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKHR 66

Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
           L++   K  D G + C+           +Q
Sbjct: 67  LILPEAKVQDSGEFECRTEGVSAFFGVTVQ 96

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 61.5 bits (150), Expect = 9e-13
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 2/73 (2%)

Query: 60  HTAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE-KHSLLVRHIKDTDF 117
            T      A     V   P  + EW+++G  I    RI  +   +    L++R +   D 
Sbjct: 15  QTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDS 74

Query: 118 GNYMCQASNNLGS 130
            + M +A N  G 
Sbjct: 75  ASIMVKAINIAGE 87

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 61.6 bits (150), Expect = 9e-13
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 66  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
            A            KV W R G+ I+   +  +     +H+L VR +   D G+Y   A 
Sbjct: 25  PAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIAG 83

Query: 126 NNLGS 130
           ++   
Sbjct: 84  SSKVK 88

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 60.8 bits (148), Expect = 2e-12
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 5/92 (5%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAIT----LGGRIDMHVSSEK 104
           P  +    +        R E+   V +   A+V W ++G  +T       R       ++
Sbjct: 8   PVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKR 66

Query: 105 HSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
           H L+   +   D G Y    +     ++  ++
Sbjct: 67  HILIFSDVVQEDRGRYQVITNGGQCEAELIVE 98

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 60.8 bits (148), Expect = 2e-12
 Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 44  VNVIYPPEVSVEKQWIHTAPD-MRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVS 101
           ++         + +  +      +  +   + A+  A+V+W ++G  I + G +      
Sbjct: 10  MDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESI 68

Query: 102 SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
             K +L +      D   Y C       S++ F++
Sbjct: 69  GAKRTLTISQCSLADDAAYQCVVGGEKCSTELFVK 103

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 60.8 bits (148), Expect = 2e-12
 Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 1/91 (1%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSL 107
           PP   V              +   V   P   V W R+   +     R           L
Sbjct: 5   PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64

Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
            +   +  D G Y C+A N  G+ Q   +L 
Sbjct: 65  RILAAERGDAGFYTCKAVNEYGARQCEARLE 95

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 60.4 bits (147), Expect = 2e-12
 Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 1/88 (1%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
               + E   +       A   C    +P A V W +    +   G+           L 
Sbjct: 8   ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLT 66

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
           +  ++  D   Y C        +Q  +Q
Sbjct: 67  ISALEKADSDTYTCDIGQAQSRAQLLVQ 94

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 62.6 bits (152), Expect = 2e-12
 Identities = 19/123 (15%), Positives = 39/123 (31%), Gaps = 13/123 (10%)

Query: 9   NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 68
              S  +D  T+  +G Y+C  + +     S    + V     +    +W+    D    
Sbjct: 52  QASSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLEVHIGWLLLQAPRWVFKEED-PIH 107

Query: 69  IICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
           + C+ + N    KV + ++G                     +      D G+Y C+    
Sbjct: 108 LRCHSWKNTALHKVTYLQNGKDR--------KYFHHNSDFHIPKATLKDSGSYFCRGLVG 159

Query: 128 LGS 130
             +
Sbjct: 160 SKN 162

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 11/98 (11%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSL 107
              V +E QW          + C    +P     +WF + + I          SS+  S 
Sbjct: 7   KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLI----------SSQASSY 56

Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPV 145
            +      D G Y CQ + +  S    +++     +  
Sbjct: 57  FIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQ 94

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 60.4 bits (147), Expect = 3e-12
 Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 3/96 (3%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
           P       + +       A + C + ++  A V+W      +  G +  +        L+
Sbjct: 8   PVRFQEALKDLEVLEGGAATLRCVL-SSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLELV 66

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIP 144
           VR+++  D G Y C   +   S+   +    +P+ P
Sbjct: 67  VRNLRPQDSGRYSCSFGDQTTSATLTVT--ALPSGP 100

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 60.1 bits (146), Expect = 3e-12
 Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 54  VEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHI 112
           +EK+          +  C    NP   + W ++G       RI    V ++  SL++  +
Sbjct: 13  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 72

Query: 113 KDTDFGNYMCQASNNLGSSQQFIQL 137
             +D GNY C   N  GS      L
Sbjct: 73  VPSDKGNYTCVVENEYGSINHTYHL 97

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 60.3 bits (146), Expect = 6e-12
 Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 10/97 (10%)

Query: 48  YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-- 105
           + P                  I  +V   P   + W  +G+ +     I           
Sbjct: 2   HMPASVQLHT---AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANE 58

Query: 106 -----SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
                 L +      + GNY   A+N  G +   I  
Sbjct: 59  TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 95

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 53
            L L++ T    G Y  +A+N  G+  S + +   +  P   
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNPFEF 104

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 61.7 bits (149), Expect = 7e-12
 Identities = 17/128 (13%), Positives = 36/128 (28%), Gaps = 8/128 (6%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
           +L ++ V+      Y C A+        K   V +   P+                 + C
Sbjct: 55  TLTMNPVSFGNEHSYLCTATCESR-KLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKC 113

Query: 72  NVYANPPA---KVEWFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTDFG-NYMCQA 124
           +V    P    +++  +    +         D      K   +       D G   +C+A
Sbjct: 114 SVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRA 173

Query: 125 SNNLGSSQ 132
             ++    
Sbjct: 174 KLHIDEMD 181

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 41.7 bits (97), Expect = 6e-05
 Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 67  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
             + C+          W R      L G++    ++   +L +  +   +  +Y+C A+ 
Sbjct: 19  VSLTCSTTGCESPFFSW-RTQIDSPLNGKVTNEGTT--STLTMNPVSFGNEHSYLCTATC 75

Query: 127 NLGSSQQFIQL 137
                ++ IQ+
Sbjct: 76  ESRKLEKGIQV 86

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 59.7 bits (145), Expect = 7e-12
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVS-SEKHS 106
            P    + Q          ++ C + A PP K+ W R+   +     RI ++   + + +
Sbjct: 15  APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT 74

Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--GIPNIPV 145
           LL++ +   D G Y   A N  G +    +L     PN  +
Sbjct: 75  LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTL 115

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 59.3 bits (144), Expect = 8e-12
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 65  MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQ 123
               + C V   P   + W  DG  +       M    +  HSL++  +   D G Y C 
Sbjct: 25  KLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCI 84

Query: 124 ASNNLGSSQQFIQLS--GIPNIP 144
           A+N  G +   ++L      + P
Sbjct: 85  ATNRAGQNSFSLELVVAAKESGP 107

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 2/89 (2%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
           PP +         A D    + C    +P   + W +DG  ++           E   L 
Sbjct: 8   PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSR--IKQLENGVLQ 65

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
           +R+ K  D G Y C AS   G +     +
Sbjct: 66  IRYAKLGDTGRYTCIASTPSGEATWSAYI 94

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 3/84 (3%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
            P  S   +           + C+V   P  ++ W  +G  I           +    L 
Sbjct: 11  APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYA---RSTCEAGVAELH 67

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQ 132
           ++     D G Y C A N LG   
Sbjct: 68  IQDALPEDHGTYTCLAENALGQVS 91

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 66  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE--KHSLLVRHIKDTDFGNYMCQ 123
           R E+ C V +   A V+WF++G  I  G +    +  E  KH L++      D   Y   
Sbjct: 24  RVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVM 82

Query: 124 ASNNLGSSQQFIQL 137
            +    S++  + L
Sbjct: 83  TTGGQSSAKLSVDL 96

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 9/84 (10%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
             ++ VE       P     + C    +P    +WF++   +T            K   +
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLT---------HETKKLYM 53

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQ 132
           V ++     G Y C   N+  S  
Sbjct: 54  VPYVDLEHQGTYWCHVYNDRDSQD 77

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 8/42 (19%), Positives = 15/42 (35%)

Query: 9  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
           ++   +  V L+  G Y C   N+     SK   + +    
Sbjct: 48 TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 59.6 bits (144), Expect = 3e-11
 Identities = 15/124 (12%), Positives = 35/124 (28%), Gaps = 23/124 (18%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGEST-SKNFIVNVIYP---PEVSVEKQWIHTAPDMRA 67
            L +  +T   +G Y     +  G    +K   + ++     P +  E           A
Sbjct: 62  DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWE--------CSNA 113

Query: 68  EIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN 127
            + C V      +++ ++    +    +  M                     + C+A N 
Sbjct: 114 TLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR-----------APFKCKAVNR 162

Query: 128 LGSS 131
           +   
Sbjct: 163 VSQE 166

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 57.8 bits (140), Expect = 3e-11
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAI-TLGGRIDMHVSSEKHSL 107
           PP +         A D  A + C    +P   + W ++G        R  +    E+ +L
Sbjct: 8   PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ---EQGTL 64

Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
            +++++ +D G Y C A+++ G +     L 
Sbjct: 65  QIKNLRISDTGTYTCVATSSSGETSWSAVLD 95

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 59.5 bits (144), Expect = 3e-11
 Identities = 20/123 (16%), Positives = 43/123 (34%), Gaps = 13/123 (10%)

Query: 11  ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII 70
            SL++     + +G Y+C        + S+   + V     + ++             + 
Sbjct: 51  SSLNIVNAKFEDSGEYKCQHQQV---NESEPVYLEVFSDW-LLLQASAEVVMEGQPLFLR 106

Query: 71  CNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 129
           C+ + N    KV +++DG A+            E H++ + +    D G Y C       
Sbjct: 107 CHGWRNWDVYKVIYYKDGEAL--------KYWYENHNISITNATVEDSGTYYCTGKVWQL 158

Query: 130 SSQ 132
             +
Sbjct: 159 DYE 161

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 23/126 (18%)

Query: 50  PEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
           P+VS+   W          + CN       +  +WF +G+                 SL 
Sbjct: 5   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLS----------EETNSSLN 54

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNI------PVFQKSSRRL------GPD 156
           + + K  D G Y CQ      S   ++++     +       V +     L        D
Sbjct: 55  IVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWD 114

Query: 157 GYRLVW 162
            Y++++
Sbjct: 115 VYKVIY 120

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 9/49 (18%), Positives = 21/49 (42%)

Query: 2   KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
           + ++  Y   ++ +   T++ +G Y C       +  S+   + VI  P
Sbjct: 125 EALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 42.0 bits (98), Expect = 5e-05
 Identities = 11/104 (10%), Positives = 28/104 (26%), Gaps = 10/104 (9%)

Query: 67  AEIICNVYANPPAKVEWFRDGTAITLG------GRIDM---HVSSEKHSLLVRHIKDTDF 117
             + C+       ++E  R               R  +    +   K    +  ++  D 
Sbjct: 20  VSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDS 79

Query: 118 GNYMCQASNNLGSSQQFIQLSGIPNIP-VFQKSSRRLGPDGYRL 160
           G Y C          +++ +    +   +  +     G    +L
Sbjct: 80  GQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQL 123

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 57.5 bits (139), Expect = 3e-11
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 49  PPEVSVEK-QWIHTAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHS 106
           P  V+VE+ +     P      IC   + +P   + W R        G++          
Sbjct: 9   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLH-----NGKLPSRAMDFNGI 63

Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
           L +R+++ +D G Y+C  SN     Q    L 
Sbjct: 64  LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 59.3 bits (143), Expect = 5e-11
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 155 PDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214
           P+ + + W     S I +Y+L++R +  +  W+   IP            SY I GL+  
Sbjct: 15  PNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGH--------LNSYTIKGLKPG 66

Query: 215 TQYEASVLAKNRFGWSRPSKAYVFATEGAE 244
             YE  +++  ++G    ++     T  + 
Sbjct: 67  VVYEGQLISIQQYGHQEVTRFDFTTTSTST 96

>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens} Length = 201

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 9/86 (10%)

Query: 155 PDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214
              + + W   +   +  + +++   EE    + + +PS           S NI  L   
Sbjct: 125 ASSFVVSWVSAS-DTVSGFRVEYELSEEGDEPQYLDLPST--------ATSVNIPDLLPG 175

Query: 215 TQYEASVLAKNRFGWSRPSKAYVFAT 240
            +Y  +V   +  G      +    T
Sbjct: 176 RKYIVNVYQISEDGEQSLILSTSQTT 201

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 57.0 bits (138), Expect = 6e-11
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 5/86 (5%)

Query: 65  MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQ 123
             A   C +       V WF D T +      ++       H L +R +   D G    +
Sbjct: 29  SSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFE 88

Query: 124 ASNNLGSSQQFIQLSGIPNIPVFQKS 149
           A    G  +    L       VF +S
Sbjct: 89  A----GDQRASAALRVTEKPSVFSRS 110

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 59.9 bits (144), Expect = 6e-11
 Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 31/162 (19%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
           SL L  V     G+Y C           K  +   + P E     + +        ++ C
Sbjct: 85  SLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEE----PRDLRVRVGDTTQMRC 140

Query: 72  NVYANPP---AKVEWFRDG----------------------TAITLGGRIDM--HVSSEK 104
           ++ +       KV W                          +      R+D+   +S   
Sbjct: 141 SIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRND 200

Query: 105 HSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVF 146
            S+ ++ +K++D G Y C        S++ I L  + +    
Sbjct: 201 GSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQR 242

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 31/202 (15%), Positives = 55/202 (27%), Gaps = 56/202 (27%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYA---NPPAKVEWFRDGTAITLGGRIDMHVSSEKH 105
            P ++V    +         + C V         +V+W            +  + S+   
Sbjct: 5   LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64

Query: 106 --------------------SLLVRHIKDTDFGNYMCQASNNLGSSQQ--FIQLSGIPNI 143
                               SLL++ ++  D G Y C+      S      ++L  +P  
Sbjct: 65  PTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEE 124

Query: 144 PVF----------------------------QKSSRRLGPDGYRLVWQVDTYSGIIQYLL 175
           P                                SS     +   L +  +  SG  Q L 
Sbjct: 125 PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLG 184

Query: 176 KFREREELTPWRNIVIPSDGSL 197
           +FR R         +  +DGS+
Sbjct: 185 RFRNR---VDLTGDISRNDGSI 203

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 56.6 bits (137), Expect = 7e-11
 Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 2/94 (2%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
             ++                + C +  N P   +W ++G  +    R+ +      H L+
Sbjct: 7   GLKILTPLTDQTVNLGKEICLKCEISENIP--GKWTKNGLPVQESDRLKVVQKGRIHKLV 64

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPN 142
           + +    D G+Y+        +    + +   P+
Sbjct: 65  IANALTEDEGDYVFAPDAYNVTLPAKVHVISGPS 98

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 56.6 bits (137), Expect = 7e-11
 Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 3/76 (3%)

Query: 60  HTAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGR--IDMHVSSEKHSLLVRHIKDTD 116
           +   + M     C V  NP  K+ WF+DG  I+                SL        D
Sbjct: 18  YKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDD 77

Query: 117 FGNYMCQASNNLGSSQ 132
            GNY   A+N  G   
Sbjct: 78  DGNYTIMAANPQGRIS 93

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 58.3 bits (140), Expect = 2e-10
 Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 18/153 (11%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE--- 68
            L L    +     Y C+       +      +NV   PE +       T   M      
Sbjct: 78  RLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQE 137

Query: 69  -IICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-------------SLLVRHIK 113
              CN    NP  K+ W+R+G  + +   ++                     +L +R  K
Sbjct: 138 IATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRK 197

Query: 114 DTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVF 146
           D    ++ C A  +L   +     S   ++ + 
Sbjct: 198 DDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 30  ASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTA 89
           +S + G +++   +  +  P + +   +         A + C +  +  A VEW++    
Sbjct: 2   SSGSSGRTSAMLTVRAL--PIKFTEGLRNEEATEGATAVLRCEL--SKMAPVEWWKGHET 57

Query: 90  ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
           +  G R  +     +  L +R +   D G Y+C    
Sbjct: 58  LRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGK 94

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 58.9 bits (141), Expect = 3e-10
 Identities = 33/203 (16%), Positives = 70/203 (34%), Gaps = 20/203 (9%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ---------WIHTA 62
           S+ ++++ L  AG Y C A ++   +   N  + V+ P    V +           +   
Sbjct: 186 SVVINQLRLSDAGQYLCQAGDDSNSNKK-NADLQVLKPEPELVYEDLRGSVTFHCALGPE 244

Query: 63  PDMRAEIICNVYANPPAKVEWFRDG-TAITLGGRIDMHVSSEKH--SLLVRHIKDTDFGN 119
               A+ +C   +     V     G  A    GRI ++   +    S+++  ++  D G 
Sbjct: 245 VANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGR 304

Query: 120 YMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRL----GPDGYRLVWQVDTYSGIIQYLL 175
           Y+C A ++    +     +    +       R      G  G  +      Y+      +
Sbjct: 305 YLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLC-PYNRKESKSI 363

Query: 176 KFREREELTPWRN--IVIPSDGS 196
           K+    E        +++ S+G 
Sbjct: 364 KYWCLWEGAQNGRCPLLVDSEGW 386

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 56.5 bits (135), Expect = 2e-09
 Identities = 27/202 (13%), Positives = 62/202 (30%), Gaps = 24/202 (11%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
            +++ +++   +G Y+C    N     S +  + V   P +  + +           I C
Sbjct: 76  VVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINC 134

Query: 72  NVYANPPAKVEWFRDGTAITL--------------GGRIDMHVSSEKHSLLVRHIKD--- 114
                   K +       +                 GRI + +      L    I     
Sbjct: 135 PFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRL 194

Query: 115 TDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYL 174
           +D G Y+CQA ++  S+++           +  +           + +        +  +
Sbjct: 195 SDAGQYLCQAGDDSNSNKKNAD-----LQVLKPEPELVYEDLRGSVTFHC-ALGPEVANV 248

Query: 175 LKFREREELTPWRNIVIPSDGS 196
            KF  R+      ++V+ + G 
Sbjct: 249 AKFLCRQSSGENCDVVVNTLGK 270

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 51.9 bits (123), Expect = 6e-08
 Identities = 18/150 (12%), Positives = 42/150 (28%), Gaps = 10/150 (6%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD--MRAEI 69
           ++ L+++T + AG Y C+ + +    T+    +    P                 +    
Sbjct: 407 TVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHF 466

Query: 70  ICNVYANPPAKVEWFRDGTAITL-------GGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
            C   +      +W   G               ++   +S   SL +  +   D G Y C
Sbjct: 467 PCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWC 526

Query: 123 QASNNLGSSQQF-IQLSGIPNIPVFQKSSR 151
                    +   + ++         +   
Sbjct: 527 GVKQGHFYGETAAVYVAVEERKAAGSRDVS 556

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 48.5 bits (114), Expect = 9e-07
 Identities = 24/189 (12%), Positives = 58/189 (30%), Gaps = 24/189 (12%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 68
           S+ +  +  + AG Y C A ++      S  + + + V     +      +         
Sbjct: 291 SVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVA 350

Query: 69  IICNVYANPPAKVEWF-----------------RDGTAITLGGR--IDMHVSSEKHSLLV 109
           ++C         ++++                          GR  +     +   ++++
Sbjct: 351 VLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVIL 410

Query: 110 RHIKDTDFGNYMCQASNNLG--SSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTY 167
             +   D G Y C  + +    ++ +   + G PN+ V    +  LG            +
Sbjct: 411 NQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKF 470

Query: 168 SGIIQYLLK 176
           S   +Y  K
Sbjct: 471 SSYEKYWCK 479

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 58.3 bits (141), Expect = 4e-10
 Identities = 21/121 (17%), Positives = 39/121 (32%)

Query: 17  RVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN 76
               +++             S    F       P   V+           A   C V A+
Sbjct: 450 PPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIAS 509

Query: 77  PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ 136
            P  V W +D   +    +     +   + L +  +K  D G Y  +A N+ G+ ++ + 
Sbjct: 510 SPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVF 569

Query: 137 L 137
           L
Sbjct: 570 L 570

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 42.1 bits (99), Expect = 8e-05
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 14/102 (13%)

Query: 135 IQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG---IIQYLLKFREREELTPWRNIVI 191
           +     P  P F      +  +   L W+     G   +  Y ++ RE    + W     
Sbjct: 4   VADVPEPEPPRFPIIEN-ILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGS-WSPCAK 61

Query: 192 PSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS 233
                           I GL+   QYE  ++A+N+ G S+P 
Sbjct: 62  SRY---------TYTTIEGLRAGKQYEFRIIAENKHGQSKPC 94

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.0 bits (138), Expect = 1e-09
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD-GTAITLGGRIDMHVSSEKHSL 107
                 + Q +        + +C    +PP  + W       ++      + V  +  +L
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPD-GTL 443

Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
            VR+ +  D G Y+C A+N  G+      L
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
           +L++    ++  G Y CIA+N  G + S    ++V
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGG-NDSMPAHLHV 475

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 57.2 bits (137), Expect = 1e-09
 Identities = 22/153 (14%), Positives = 51/153 (33%), Gaps = 13/153 (8%)

Query: 99  HVSSEKHSLLVRHIKDTDFGNYMCQASNNLG---SSQQFIQLSGIPNIPVFQKSSRRLGP 155
             ++E + LL + + + +  N+   A N LG   S+        +          + +  
Sbjct: 336 APTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINS 395

Query: 156 DGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQL 213
              +L W +  +         ++ ++   +   RN+ I    +      +    +  L  
Sbjct: 396 TAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVEN-----SSYLVALDKLNP 450

Query: 214 FTQYEASVLAK--NRFGWSRPSKAYVFAT-EGA 243
           +T Y   +       + WS+ S      T E +
Sbjct: 451 YTLYTFRIRCSTETFWKWSKWSNKKQHLTTEAS 483

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 107

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 23/108 (21%), Positives = 36/108 (33%), Gaps = 13/108 (12%)

Query: 138 SGIPNIPVFQKSSRRLGPDGYRLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDG 195
           S  P  P    S+     +   L W    +    ++ Y L++   +E      I    D 
Sbjct: 5   SSGPGRPTMMISTTA--MNTALLQWHPPKELPGELLGYRLQYCRADE-ARPNTIDFGKD- 60

Query: 196 SLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA 243
                   Q + +TGL   T Y   + AKNR G     +  +   E  
Sbjct: 61  -------DQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPEDL 101

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 54.1 bits (130), Expect = 2e-09
 Identities = 14/138 (10%), Positives = 37/138 (26%), Gaps = 24/138 (17%)

Query: 4   IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP---PEVSVEKQWIH 60
           ++L     +L +  V+ +  G Y     +           + V      P +  E     
Sbjct: 62  VDLDKTNGALRIYNVSKEDRGDYYMRMLHE--TEDQWKITMEVYEMVSKPMIYWECSNAT 119

Query: 61  TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
                   + C V      +++ ++    +    +  M                     +
Sbjct: 120 --------LTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR-----------APF 160

Query: 121 MCQASNNLGSSQQFIQLS 138
            C+A N +    +   ++
Sbjct: 161 KCKAVNRVSQESEMEVVN 178

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 54.4 bits (130), Expect = 6e-09
 Identities = 17/157 (10%), Positives = 44/157 (28%), Gaps = 19/157 (12%)

Query: 2   KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT 61
           K  +++   + + +   T    G+Y         +S +      ++    V  +     T
Sbjct: 136 KGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKT 195

Query: 62  APDMR---------AEIICNVYANPPAKV--EWF--RDGTAITL------GGRIDMHVSS 102
                          +I+ +    P   +   W+  R+G           G  ++    +
Sbjct: 196 VALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSIT 255

Query: 103 EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG 139
               L        D   + C A        + ++++ 
Sbjct: 256 PDGHLFKESATYDDTAKFWCVAKLYQQIEDETVEVAA 292

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 53.7 bits (128), Expect = 1e-08
 Identities = 16/131 (12%), Positives = 35/131 (26%), Gaps = 21/131 (16%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY--PPEVSVEKQWIHTAPDMRAEI 69
           +L +   T + AG Y+    +    ++ ++ +  +          E Q  + +     E+
Sbjct: 53  TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVEL 112

Query: 70  ICNVYA---NPPAKV-----EWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM 121
              V       PA        W +    I                + ++       G Y 
Sbjct: 113 HATVKFSGGKTPADNYELHYSWSKGEDVI-----------DTTQDITIQEFTADKNGVYT 161

Query: 122 CQASNNLGSSQ 132
            +       S 
Sbjct: 162 VKVWGESEDSA 172

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 51.4 bits (123), Expect = 8e-09
 Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 15/95 (15%)

Query: 141 PNIPVFQKSSRRLGPDGYRLVW--QVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLA 198
           P+I     S +      ++L    Q D  + I++Y++K+R +++   W    +  +    
Sbjct: 12  PSIHGQPSSGKS-----FKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGN---- 62

Query: 199 GPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS 233
                    +  LQ    YE  + A NR G+S P+
Sbjct: 63  ----KDHIILEHLQWTMGYEVQITAANRLGYSEPT 93

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 12/112 (10%)

Query: 134 FIQLSGIPNIPVFQKSSRRLGPDGYRLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVI 191
           F  LS  P+IP   + + R   +   L W+   D  S I  ++L++ E +    +    +
Sbjct: 11  FTTLSCEPDIPNPPRIANR-TKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYM 69

Query: 192 PSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA 243
            S          + + IT L      +  + A+N +G S  S+  ++ T G 
Sbjct: 70  GSQ---------KQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGC 112

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 19/133 (14%)

Query: 123 QASNNLGSSQ-----QFIQLSGIPNIP--VFQKSSRRLGPDGYRLVWQ-VDTYSGIIQ-Y 173
             +    SS             +P  P       S+   P    + WQ     +G I  Y
Sbjct: 82  MVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGY 141

Query: 174 LLKFRER--EELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR 231
           ++ +      E+  W    +  +          ++ I  L L T Y   + A+N  G   
Sbjct: 142 IIYYSTDVNAEIHDWVIEPVVGN--------RLTHQIQELTLDTPYYFKIQARNSKGMGP 193

Query: 232 PSKAYVFATEGAE 244
            S+A  F T  A 
Sbjct: 194 MSEAVQFRTPKAH 206

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A Length = 211

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 16/92 (17%)

Query: 159 RLVWQ------VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQ 212
           R+ W           +    Y ++++        +     +         T SY +TGL+
Sbjct: 22  RITWADNSLPKHQKITDSRYYTVRWKTNIP-ANTKYKNANAT--------TLSYLVTGLK 72

Query: 213 LFTQYEASVLAKNRFGWSRPSKAYVFAT-EGA 243
             T YE SV+       S  S      T E  
Sbjct: 73  PNTLYEFSVMVTKGRRSSTWSMTAHGTTFELV 104

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 7/91 (7%)

Query: 48  YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM--HVSSEKH 105
           +PP +      +  +    A + C     P   +EW++ G  +           +     
Sbjct: 8   FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG 67

Query: 106 SLLVRHI-----KDTDFGNYMCQASNNLGSS 131
           SL    I        D G Y+C A N LG +
Sbjct: 68  SLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIYPPEVSV 54
            G+Y C+A N +GE+ S +  + V        
Sbjct: 84  EGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 118

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 9/84 (10%)

Query: 159 RLVWQVDTYSGIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY 217
           R+ WQ       +Q Y ++++          + IP            S  +  L     Y
Sbjct: 35  RVSWQEPRCERPLQGYSVEYQLLNG-GELHRLNIP-------NPAQTSVVVEDLLPNHSY 86

Query: 218 EASVLAKNRFGWSRPSKAYVFATE 241
              V A+++ GW R  +  +    
Sbjct: 87  VFRVRAQSQEGWGREREGVITIES 110

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1 Length = 115

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 8/101 (7%)

Query: 152 RLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWR----NIVIPSDGSLAGPIYTQS 205
           RL  +   L W V  +    I+ + +++R   +   W+    NI        +    + +
Sbjct: 13  RLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFT 72

Query: 206 YNITGLQLFTQYEASVLAKNRFGWSRPSKA--YVFATEGAE 244
            ++T L+    Y   +LA      ++ S      +   GA 
Sbjct: 73  ASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAA 113

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 50.1 bits (120), Expect = 3e-08
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 11/86 (12%)

Query: 159 RLVWQV---DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFT 215
           +L W+    D +   + Y + + + E +   R       G +          I  L   T
Sbjct: 35  KLTWRTPASDPHGDNLTYSVFYTK-EGIARERVENTSHPGEM-------QVTIQNLMPAT 86

Query: 216 QYEASVLAKNRFGWSRPSKAYVFATE 241
            Y   V+A+N+ G    S      T+
Sbjct: 87  VYIFRVMAQNKHGSGESSAPLRVETQ 112

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 52.3 bits (125), Expect = 4e-08
 Identities = 40/245 (16%), Positives = 64/245 (26%), Gaps = 44/245 (17%)

Query: 24  GLYQCIASN-NIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE 82
               C        E       +    PPE           P     + C V      + E
Sbjct: 76  IQLTCNILTFGQLEQNVYGITIISGLPPE----------KP---KNLSCIVNEGKKMRCE 122

Query: 83  WF--RDG---TAITLGGRIDMHVSSEKH--------SLLVRHIKDTDFGNYMCQASNNLG 129
           W   R+    T  TL      H  ++            +              +A N LG
Sbjct: 123 WDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALG 182

Query: 130 ---SSQQFIQLS--GIPNIPV-FQKSSRRLGPDGYRLVWQ--VDTYSGIIQYLLKFRERE 181
              S            PN P      +        +L W         I++Y +++R ++
Sbjct: 183 KVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKD 242

Query: 182 ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG---WSRPSKAYVF 238
             + W  I               S+ +  L+ FT+Y   +      G   WS  S+    
Sbjct: 243 A-STWSQIPPEDT-----ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASG 296

Query: 239 ATEGA 243
            T   
Sbjct: 297 ITYED 301

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 14/127 (11%), Positives = 31/127 (24%), Gaps = 15/127 (11%)

Query: 123 QASNNLG---SSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG---IIQYLLK 176
              N +G   ++   I                    +   + W     S    I+++ + 
Sbjct: 378 TVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVL 437

Query: 177 FREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAY 236
             +   +T W+                ++Y    L     Y  +V      G   P    
Sbjct: 438 SDKAPCITDWQQEDGTV---------HRTYLRGNLAESKCYLITVTPVYADGPGSPESIK 488

Query: 237 VFATEGA 243
            +  +  
Sbjct: 489 AYLKQAP 495

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 37/254 (14%), Positives = 73/254 (28%), Gaps = 59/254 (23%)

Query: 26  YQCIASNNIGESTSKNFIVNVIY------PPEVSVEK----------QWIHTAPDMRAEI 69
               A N +G+ TS +   + +Y      P  +SV             W + +      +
Sbjct: 173 VWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIIL 232

Query: 70  ICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ--ASNN 127
             N+         W +               +S + S  V+ +K   F  Y+ +      
Sbjct: 233 KYNIQYRTKDASTWSQIPPE---------DTASTRSSFTVQDLKP--FTEYVFRIRCMKE 281

Query: 128 LGSSQ--------QFIQLSGIPNIP----VFQKSSRRLGPDGYRLVWQ----VDTYSGII 171
            G             I     P+           S   G    +LVW+     +    I+
Sbjct: 282 DGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKIL 341

Query: 172 QYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR 231
            Y +     +  +  +N  + +              +T      +Y A++  +N  G S 
Sbjct: 342 DYEVTLTRWK--SHLQNYTVNA------------TKLTVNLTNDRYLATLTVRNLVGKSD 387

Query: 232 PSKAYVFATEGAET 245
            +   + A +   T
Sbjct: 388 AAVLTIPACDFQAT 401

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 51.8 bits (123), Expect = 4e-08
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 6/110 (5%)

Query: 24  GLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA---K 80
               C ++   G+ST+K F+     P  V +              + C V    P     
Sbjct: 61  SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLT 120

Query: 81  VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
           V   R      L     +   +E  + ++         N+ C+   +L  
Sbjct: 121 VVLLRGEK--ELKREPAVGEPAEVTTTVLVRRDH-HGANFSCRTELDLRP 167

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A* Length = 536

 Score = 52.5 bits (125), Expect = 4e-08
 Identities = 40/246 (16%), Positives = 64/246 (26%), Gaps = 41/246 (16%)

Query: 23  AGLYQCIASNNIGESTSKNFIVNVIYPPEV-----------SVEKQWIHTAPDMRAEIIC 71
            G   C        +      +    PP              VE +W         E I 
Sbjct: 307 EGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDI- 365

Query: 72  NVYANPPAKVEWFRDGTAITLGGRIDMHV--SSEKHSLLVRHIKDTD---FGNYMC--QA 124
            VY      V   +        G  +  V  S   H L    +  +D     NY    +A
Sbjct: 366 -VY-----SVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEA 419

Query: 125 SNNLG----SSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG--IIQYLLKFR 178
            N +     S         I      +            + W +       + +Y + +R
Sbjct: 420 RNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYR 479

Query: 179 EREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVF 238
           ++ + +   N+               S  +  L   T Y   V A  + G    SK + F
Sbjct: 480 KKGD-SNSYNVRRTE---------GFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEF 529

Query: 239 ATEGAE 244
            T   E
Sbjct: 530 QTLSPE 535

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 48.8 bits (116), Expect = 6e-08
 Identities = 14/83 (16%), Positives = 21/83 (25%), Gaps = 12/83 (14%)

Query: 67  AEIICNVYANPPAK---VEWFRD---------GTAITLGGRIDMHVSSEKHSLLVRHIKD 114
                 V      K   V+WF+          G  + L    D         L +   + 
Sbjct: 22  ITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQP 81

Query: 115 TDFGNYMCQASNNLGSSQQFIQL 137
              G+Y C+ S           L
Sbjct: 82  AFTGSYRCEVSTKDKFDCSNFNL 104

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C Length = 102

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 10/87 (11%)

Query: 159 RLVWQ---VDTYSGIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214
            L W        +  IQ + + +R  +            +GS       Q + I  LQ  
Sbjct: 22  MLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGS------KQWHMIGHLQPE 75

Query: 215 TQYEASVLAKNRFGWSRPSKAYVFATE 241
           T Y+  +   N  G S  S   +  T+
Sbjct: 76  TSYDIKMQCFNEGGESEFSNVMICETK 102

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 49.2 bits (117), Expect = 8e-08
 Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 13/117 (11%)

Query: 29  IASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGT 88
           + S++     S   +    +                   E+ C    +P  +++W+ +G 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQ 60

Query: 89  AITL-------GGRIDMH------VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
                      G R+D              ++ +  + + D G Y C+ASN+   + 
Sbjct: 61  GPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNH 117

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 48.6 bits (116), Expect = 8e-08
 Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 14/120 (11%)

Query: 129 GSSQQ--FIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG---IIQYLLKFREREEL 183
           GSS    F      P IPV      ++    +++ W     +G   I +Y+++  E    
Sbjct: 4   GSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNG 63

Query: 184 TPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA 243
             W  I             T+ +    L     Y   V   +  G S  S++ +  T   
Sbjct: 64  NKWEMI---------YSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAV 114

>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 130

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 9/85 (10%)

Query: 159 RLVWQVDTYSG--IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
           RL+WQ        I+ Y +  R          + + +  +         Y  TGL+  + 
Sbjct: 45  RLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSAR-------QYTATGLKPESV 97

Query: 217 YEASVLAKNRFGWSRPSKAYVFATE 241
           Y   + A+ R GW   ++A V  TE
Sbjct: 98  YLFRITAQTRKGWGEAAEALVVTTE 122

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 48.2 bits (115), Expect = 9e-08
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 12/107 (11%)

Query: 139 GIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG--IIQYLLKFREREELTPWRNIVIPSDGS 196
            +P  P+ Q        +   L W+    S      Y+L+  +      +R + +  +  
Sbjct: 8   PVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNG-GQFREVYVGKE-- 64

Query: 197 LAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA 243
                 T    + GL   + Y A V A N+ G S  SK  V  T   
Sbjct: 65  ------T-MCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEG 104

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 13/109 (11%)

Query: 139 GIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG---IIQYLLKFREREELTPWRNIVIPSDG 195
             P+I   +  S        ++ +     +G   I++Y  ++R   E           + 
Sbjct: 10  SSPSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 64

Query: 196 SLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGAE 244
           S           I GL+  T Y   + A N  G    S A  F T+   
Sbjct: 65  S-----MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVR 108

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A Length = 209

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 17/125 (13%)

Query: 123 QASNNLGSSQ-----QFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLL 175
            A N  G  +     +F             +       +  ++      D  S I  YL+
Sbjct: 86  AALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLV 145

Query: 176 KFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKA 235
           ++R     + W+  +         P  +    +  L    +YE  V+A+N+ G S+ +  
Sbjct: 146 RYRALS--SEWKPEI-------RLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAA-H 195

Query: 236 YVFAT 240
           +VF T
Sbjct: 196 FVFRT 200

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 49.3 bits (117), Expect = 1e-07
 Identities = 16/136 (11%), Positives = 31/136 (22%), Gaps = 13/136 (9%)

Query: 24  GLYQCIASNNIGESTSKNFIVNVIYPPE---VSVEKQWIHTAPDMRAEIICNVYANPPA- 79
               C        +     ++     P+   +     W          + C V    P  
Sbjct: 64  TQPVCFFRCA-RRTLQARGLIRTFQRPDRVELMPLPPWQP--VGENFTLSCRVPGAGPRA 120

Query: 80  --KVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS--QQ 133
              +   R    +                 +  V   ++    N+ C+A  +L       
Sbjct: 121 SLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRPHGLGL 180

Query: 134 FIQLSGIPNIPVFQKS 149
           F   S    +  F  S
Sbjct: 181 FENSSAPRELRTFSLS 196

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 1/81 (1%)

Query: 57  QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTD 116
                       I C+       KV        +   G  +  VS     L  + ++  D
Sbjct: 254 SAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGS-NGSVSVRNGDLFFKKVQVED 312

Query: 117 FGNYMCQASNNLGSSQQFIQL 137
            G Y C A     +    ++L
Sbjct: 313 GGVYTCYAMGETFNETLSVEL 333

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD 64
            L   +V ++  G+Y C A       T  +  + V     +      ++ A D
Sbjct: 302 DLFFKKVQVEDGGVYTCYAMGETFNETL-SVELKVY-NFTLHGHHDTLNAAAD 352

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 11/92 (11%)

Query: 153 LGPDGYRLVWQVDTYSGIIQ-YLLKFREREELT---PWRNIVIPSDGSLAGPIYTQSYNI 208
           L P   ++ W VD     IQ Y + +R+   L     W+N+              +S  +
Sbjct: 27  LTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTE-------RSAVL 79

Query: 209 TGLQLFTQYEASVLAKNRFGWSRPSKAYVFAT 240
             L+    YE  V           S++    T
Sbjct: 80  VNLKKGVTYEIKVRPYFNEFQGMDSESKTVRT 111

>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1, midin-2, ring finger protein 60, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 127

 Score = 48.0 bits (114), Expect = 2e-07
 Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 1/106 (0%)

Query: 129 GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRN 188
           GSS + +     PN P  ++       D   + W  D    I  Y L++        + +
Sbjct: 4   GSSGEGLDYLTAPNPPSIREELCTASHDTITVHWISDDEFSISSYELQYTIFTGQANFIS 63

Query: 189 IVIPSDG-SLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS 233
           +    D   +   I    Y + GLQ  T+Y   V A N+ G     
Sbjct: 64  LYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSE 109

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 48.8 bits (116), Expect = 2e-07
 Identities = 20/135 (14%), Positives = 39/135 (28%), Gaps = 14/135 (10%)

Query: 7   LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDM- 65
                SL L  + ++  G Y+   S       S   +  +     + V            
Sbjct: 66  FTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTC 125

Query: 66  RAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHI-KDTDFGNYMCQ 123
              + C+V  A+      W   G           +  S + +L V    + +   +Y C 
Sbjct: 126 ELHLTCSVEDADDNVSFRWEALG-----------NTLSSQPNLTVSWDPRISSEQDYTCI 174

Query: 124 ASNNLGSSQQFIQLS 138
           A N + +    +   
Sbjct: 175 AENAVSNLSFSVSAQ 189

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 111

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 16/107 (14%)

Query: 138 SGIPNIPVFQKSSRRLGPDGYRLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDG 195
           S +  I   +     +      L+WQ        I++Y +K+ E+++     + +     
Sbjct: 12  SQVVVIRQERAGQTSV-----SLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAV-- 64

Query: 196 SLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEG 242
                  T    ++GL+  T+Y   V A+   G  R S+A    T  
Sbjct: 65  -------TTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGK 104

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 9/77 (11%)

Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
            L W       +  Y +++R      P++ +           + T  Y+I GL  F++Y 
Sbjct: 25  TLTWDSGNSEPVTYYGIQYRAAGTEGPFQEVD---------GVATTRYSIGGLSPFSEYA 75

Query: 219 ASVLAKNRFGWSRPSKA 235
             VLA N  G   PS+A
Sbjct: 76  FRVLAVNSIGRGPPSEA 92

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR-DGTAIT---LGGRIDMHVSSEK 104
            P +      ++    M AE+ C   +     V W   +GT +T      RI +      
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDG-- 397

Query: 105 HSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL--SGIPN 142
            +L   ++   D G Y C  SN++G++     L  +G  +
Sbjct: 398 -TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHH 436

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-YPP 50
           +L+   VT++  G+Y C+ SN++G +T+ +  +NV     
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVG-NTTASATLNVTGTHH 436

>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1, NCAM-120, CD56 antigen, membra protein, glycoprotein, structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo sapiens} Length = 122

 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 13/108 (12%)

Query: 141 PNIPVFQKSSRRLGPDGYRLVWQVDTYSG---IIQYLLKFREREELTPWRNIVIPSDGSL 197
           P+I   +  S        ++ +     +G   I++Y  ++R   E   W +         
Sbjct: 11  PSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRAVGE-EVWHSKWYD----A 60

Query: 198 AGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGAET 245
                     I GL+  T Y   + A N  G    S A  F T+    
Sbjct: 61  KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVRE 108

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDG----TAITLGGRIDMHVSSEK 104
            P +    + ++ +    AE+ C     P + V+W        +  +   RI +      
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCR--TPPMSSVKWLLPNGTVLSHASRHPRISVLNDG-- 407

Query: 105 HSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
            +L   H+  +D G Y C  +N  G+S     L
Sbjct: 408 -TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
           +L+   V L   G+Y C+ +N  G +++ +  +NV
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAG-NSNASAYLNV 441

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 47.0 bits (111), Expect = 4e-07
 Identities = 14/105 (13%), Positives = 31/105 (29%), Gaps = 11/105 (10%)

Query: 44  VNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE--WFRDGTAITLGGRI----- 96
              IY   +S     I  +   +  + C         ++  W    +       +     
Sbjct: 4   GYRIYDVVLSPSHG-IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK 62

Query: 97  ---DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
                 +     +L +  +  +D G Y C AS+ L + +    + 
Sbjct: 63  TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 107

>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de novo; 2.50A {Synthetic} Length = 98

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 154 GPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQL 213
             D  RL W     +    ++++++E E++    N+ +P           +SY++TGL+ 
Sbjct: 14  TEDSLRLSWTAPD-AAFDSFMIQYQESEKVGEAINLTVPGS--------ERSYDLTGLKP 64

Query: 214 FTQYEASVLAKNRFGWSRPSKAYVFATEGA 243
            T+Y  S+        S P  A  F T G 
Sbjct: 65  GTEYTVSIYGVKGGHRSNPLSA-EFTTGGH 93

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus} Length = 488

 Score = 49.2 bits (116), Expect = 5e-07
 Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 12/149 (8%)

Query: 99  HVSSEKHSLLVRHIKDTDFGNYMCQASNNLG---SSQQFIQLSGIPNIPVFQKSSRRLGP 155
            +++E + L V+     +  N+     N LG   S+        +          + +  
Sbjct: 341 GLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSLKVKDINS 400

Query: 156 DGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQL 213
                 W +  +     +   ++  +       RN  I           T    +  L  
Sbjct: 401 TVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATIRGAED-----STYHVAVDKLNP 455

Query: 214 FTQYEASVLAK--NRFGWSRPSKAYVFAT 240
           +T Y   V       + WSR S      T
Sbjct: 456 YTAYTFRVRCSSKTFWKWSRWSDEKRHLT 484

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 48.2 bits (114), Expect = 5e-07
 Identities = 18/148 (12%), Positives = 46/148 (31%), Gaps = 12/148 (8%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
           +L +  VT   +G Y C   +       +  +V +      S     +    D    + C
Sbjct: 84  ALRIHNVTASDSGKYLCYFQDGDF---YEKALVELKVAALGSDLHVDVKGYKDGGIHLEC 140

Query: 72  NVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEK----HSLLVRHIKDTDFGNYMCQASN 126
                 P  +++W  +           +           + ++  ++ +      C   +
Sbjct: 141 RSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVI--MRGSSGEGVSCTIRS 198

Query: 127 NLGSSQQFIQLSGIPNIPVFQKSSRRLG 154
           +L   ++   +S I + P F+ +     
Sbjct: 199 SLLGLEKTASIS-IAD-PFFRSAQHHHH 224

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 16/129 (12%), Positives = 31/129 (24%), Gaps = 17/129 (13%)

Query: 122 CQASNNLGSSQ----QFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG---IIQYL 174
               N +G S                PV          +   + W     S    I+++ 
Sbjct: 78  LTVRNLVGKSDAAVLTIPACDFQATHPV-MDLKAFPKDNMLWVEWTTPRESVKKYILEWC 136

Query: 175 LKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSK 234
           +   +   +T W+                ++Y    L     Y  +V      G   P  
Sbjct: 137 VLSDKAPCITDWQQEDGTV---------HRTYLRGNLAESKCYLITVTPVYADGPGSPES 187

Query: 235 AYVFATEGA 243
              +  +  
Sbjct: 188 IKAYLKQAP 196

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A Length = 290

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 22/168 (13%), Positives = 40/168 (23%), Gaps = 31/168 (18%)

Query: 80  KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC--QASNNLGSSQQFIQL 137
            +EW                  +   + L  ++ +     Y+         G        
Sbjct: 132 ILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAE--SKCYLITVTPVYADGPGSPESIK 189

Query: 138 --------SGIPNIPVFQKSSRRLGPDGYRLVWQ---VDTYSGIIQ-YLLKFREREELTP 185
                   S  P +   +            L W    VD  +G I+ Y + +R       
Sbjct: 190 AYLKQAPPSKGPTVRTKKVGKNEA-----VLEWDQLPVDVQNGFIRNYTIFYRTIIG--N 242

Query: 186 WRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS 233
              + + S            Y ++ L   T Y   + A    G     
Sbjct: 243 ETAVNVDSS--------HTEYTLSSLTSDTLYMVRMAAYTDEGGKDGP 282

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 19/75 (25%), Positives = 25/75 (33%), Gaps = 8/75 (10%)

Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
            L W     S II Y +      E  P     + S            Y +TGL+    Y+
Sbjct: 40  GLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSS--------VGYYTVTGLEPGIDYD 91

Query: 219 ASVLAKNRFGWSRPS 233
            SV      G S P+
Sbjct: 92  ISVYTVKNGGESTPT 106

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A Length = 203

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 151 RRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITG 210
             +GPD  R+ W       +  +L+++   +       + I             +  +T 
Sbjct: 123 TNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPS--------DNAVVLTN 174

Query: 211 LQLFTQYEASVLAKNRFGWSRPSKAYV 237
           L   T+Y  SV +      S P +   
Sbjct: 175 LLPGTEYVVSVSSVYEQHESTPLRGRQ 201

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 47.4 bits (112), Expect = 6e-07
 Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 12/113 (10%)

Query: 24  GLYQCIASNNIGESTSKNFIVNVIYPPE---VSVEKQWIHTAPDMRAEIICNVYANPPA- 79
               C ++      ++    + V + PE   ++    W       +  + C V    P  
Sbjct: 61  SQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQP--VGKQLTLRCQVEGGAPRA 117

Query: 80  --KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 130
              V   R      L     +   +E  + ++          + C+   +L  
Sbjct: 118 QLTVVLLRGEK--ELKREPAVGEPAEVTTTVLVRRDH-HGAQFSCRTELDLRP 167

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 47.2 bits (112), Expect = 6e-07
 Identities = 16/138 (11%), Positives = 40/138 (28%), Gaps = 25/138 (18%)

Query: 4   IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP---PEVSVEKQWIH 60
           + L     SL +  +T      Y+  + N    + +  F + V+     P +  E     
Sbjct: 53  VYLDTVSGSLTIYNLTSSDEDEYEMESPN---ITDTMKFFLYVLEMVSKPMIYWECS--- 106

Query: 61  TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNY 120
                 A + C V      +++ ++                       + +        +
Sbjct: 107 -----NATLTCEVLEGTDVELKLYQGKE-----------HLRSLRQKTMSYQWTNLRAPF 150

Query: 121 MCQASNNLGSSQQFIQLS 138
            C+A N +    +   ++
Sbjct: 151 KCKAVNRVSQESEMEVVN 168

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 115

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 10/82 (12%)

Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
            L W       I  Y L +++ E     + I I             SY + GL+  + Y 
Sbjct: 35  LLSWTPPRSDTIANYELVYKDGEH-GEEQRITIEP---------GTSYRLQGLKPNSLYY 84

Query: 219 ASVLAKNRFGWSRPSKAYVFAT 240
             + A++  G    +      T
Sbjct: 85  FRLAARSPQGLGASTAEISART 106

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 45.8 bits (109), Expect = 7e-07
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 12/84 (14%)

Query: 160 LVWQVDTYSG---IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
           L W   + +     I Y+L+  E      ++                 +Y +  L+  T+
Sbjct: 26  LQWSKPSGTPSDEGISYILEMEEETSGYGFKPKY---------DGEDLAYTVKNLRRSTK 76

Query: 217 YEASVLAKNRFGWSRPSKAYVFAT 240
           Y+  V+A N  G S PS+   F T
Sbjct: 77  YKFKVIAYNSEGKSNPSEVVEFTT 100

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 45.9 bits (109), Expect = 7e-07
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 159 RLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
           RL W+   +    I  + + F   E     R +             +    +  L+    
Sbjct: 35  RLSWRPPAEAKGNIQTFTVFFSR-EGDNRERALN-------TTQPGSLQLTVGNLKPEAM 86

Query: 217 YEASVLAKNRFGWSRPSKAYVFATE 241
           Y   V+A N +G    S+    AT+
Sbjct: 87  YTFRVVAYNEWGPGESSQPIKVATQ 111

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 45.5 bits (108), Expect = 7e-07
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 16/106 (15%)

Query: 138 SGIPNIPVFQKSSRRLGPDGYRLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDG 195
           S +P +     + R +      L W         I+ Y +++ E+E    + + +  S  
Sbjct: 9   STVPIMHQVSATMRSI-----TLSWPQPEQPNGIILDYEIRYYEKEH-NEFNSSMARSQ- 61

Query: 196 SLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
                  T +  I GL+    Y   V A+   G+ + S    F T 
Sbjct: 62  -------TNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTL 100

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 10/79 (12%)

Query: 159 RLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
            L WQ           Y+++   +     W+ +        A  + T  Y + GL+  T 
Sbjct: 33  TLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTV--------ANHVKTTLYTVRGLRPNTI 84

Query: 217 YEASVLAKNRFGWSRPSKA 235
           Y   V A N  G S PS  
Sbjct: 85  YLFMVRAINPQGLSDPSPM 103

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 19/101 (18%), Positives = 28/101 (27%), Gaps = 18/101 (17%)

Query: 67  AEIICNVYANPPA---KVEWFRD---------GTAITLGGRIDMHVSSEKHSLLVRHIKD 114
              I  V A        ++WF+          G  + L    + H       + +   KD
Sbjct: 25  ITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKD 84

Query: 115 TDFGNYMCQASNNLGSSQQFIQL------SGIPNIPVFQKS 149
              GNY C+ +           L         PNI     S
Sbjct: 85  NFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNIDSGPSS 125

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 114

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 10/90 (11%)

Query: 159 RLVWQV---DTYSGIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214
            L W        +  I  + + +R  +            +G          ++I+ LQ  
Sbjct: 26  MLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGD------RYWHSISHLQPE 79

Query: 215 TQYEASVLAKNRFGWSRPSKAYVFATEGAE 244
           T Y+  +   N  G S  S   +  T+   
Sbjct: 80  TSYDIKMQCFNEGGESEFSNVMICETKARS 109

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 32/276 (11%), Positives = 70/276 (25%), Gaps = 58/276 (21%)

Query: 1   EKEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH 60
                       L L  V L  +G Y C  +     +      + V  PPE      +  
Sbjct: 50  SHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAGTVH----LLVDVPPEEPQLSCFRK 105

Query: 61  TAPDMRAEIICNVYANPPAKVEWFRDG---TAITLGGRIDMHVSSEKHSLLVRHIKDTDF 117
           +       ++C        +          T   L  R   +  +E      ++    + 
Sbjct: 106 SPLS---NVVC--------EWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQY--SQES 152

Query: 118 GNYMC----------------QASNNLGSS----QQFIQLSGIPNIPVFQKSSRRLGPDG 157
             + C                  ++++GS     Q F     +   P    +   +  + 
Sbjct: 153 QKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNP 212

Query: 158 YRLVWQ------VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGL 211
             L          ++    +++ L++R       +   ++                I   
Sbjct: 213 RWLSVTWQDPHSWNSSFYRLRFELRYRAERS-KTFTTWMVKDLQH--------HCVIHDA 263

Query: 212 QLFTQYEASVLAKNRFG---WSRPSKAYVFATEGAE 244
               ++   + A+  FG   WS  S   +       
Sbjct: 264 WSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTES 299

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 13/104 (12%)

Query: 141 PNIPVFQKSSRRLGPDGYRLVWQVDTYSG---IIQYLLKFREREELTPWRNIVIPSDGSL 197
           P+I   +  S        ++ +     +G   I++Y  ++R   E   W +         
Sbjct: 10  PSIDQVEPYSSTA-----QVQFDEPEATGGVPILKYKAEWRAVGE-EVWHSKWYD----A 59

Query: 198 AGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
                     I GL+  T Y   + A N  G    S A  F T+
Sbjct: 60  KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103

>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix; 2.40A {Homo sapiens} Length = 100

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
             I   L+ F  + + +    + + S           S  +T L+  T YE  ++A+N  
Sbjct: 27  LPIEGILVTFGRKNDPSDETTVDLTSS--------ITSLTLTNLEPNTTYEIRIVARNGQ 78

Query: 228 GWSRPSKAYVFATEGAE 244
            +S P     F T   E
Sbjct: 79  QYSPPVST-TFTTGSLE 94

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 106

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 13/83 (15%)

Query: 160 LVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY 217
           + W+  +   + + +Y L++   E     +                 SY I GL   T Y
Sbjct: 26  VNWEVPLSNGTDVTEYRLEWGGVE--GSMQICYCGP---------GLSYEIKGLSPATTY 74

Query: 218 EASVLAKNRFGWSRPSKAYVFAT 240
              V A +  G    S+     T
Sbjct: 75  YCRVQALSVVGAGPFSEVVACVT 97

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
              W       +  Y ++   +E+  P + I +  D S        S  ++GL + T+YE
Sbjct: 38  SAQWTPPN-VQLTGYRVRVTPKEKTGPMKEINLAPDSS--------SVVVSGLMVATKYE 88

Query: 219 ASVLAKNRFGWSRPSKAYVFATE 241
            SV A      SRP++  V   E
Sbjct: 89  VSVYALKDTLTSRPAQGVVTTLE 111

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 9/66 (13%)

Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
             I  + +        TP +  + P           +SY ITGLQ  T Y+  +   N  
Sbjct: 138 ETITGFQVDAVPANGQTPIQRTIKPD---------VRSYTITGLQPGTDYKIYLYTLNDN 188

Query: 228 GWSRPS 233
             S P 
Sbjct: 189 ARSSPV 194

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A Length = 290

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 8/68 (11%)

Query: 170 IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW 229
           I  Y++K+ +     P   +  P               ITGL+  T+Y   V+A      
Sbjct: 229 ITGYIIKYEKPGS-PPREVVPRP-------RPGVTEATITGLEPGTEYTIYVIALKNNQK 280

Query: 230 SRPSKAYV 237
           S P     
Sbjct: 281 SEPLIGRK 288

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 16/126 (12%), Positives = 34/126 (26%), Gaps = 18/126 (14%)

Query: 123 QASNNLGSS-----QQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKF 177
               N G S      Q   +    ++         +     R+ W       +  +L+++
Sbjct: 168 ITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTM-----RVTWAPPPSIDLTNFLVRY 222

Query: 178 REREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYV 237
              +       + I             +  +T L   T+Y  SV +      S P +   
Sbjct: 223 SPVKNEEDVAELSISPS--------DNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQ 274

Query: 238 FATEGA 243
                +
Sbjct: 275 KTGLDS 280

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 8/85 (9%)

Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
            L W     S II Y +      E  P     + S            Y +TGL+    Y+
Sbjct: 113 GLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSS--------VGYYTVTGLEPGIDYD 164

Query: 219 ASVLAKNRFGWSRPSKAYVFATEGA 243
            SV+     G S P+          
Sbjct: 165 ISVITLINGGESAPTTLTQQTAVPP 189

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 9/76 (11%)

Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
           + I  Y ++          R   +P            S  +T L   T+Y  S++A N  
Sbjct: 303 ATITGYRIRHHPEHFSGRPREDRVPHS--------RNSITLTNLTPGTEYVVSIVALNGR 354

Query: 228 GWSRPSKAYVFATEGA 243
             S        +T  A
Sbjct: 355 EESPLLIG-QQSTVSA 369

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} Length = 375

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 11/79 (13%), Positives = 18/79 (22%), Gaps = 7/79 (8%)

Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
            + W+  T   I  Y +            ++               S     L    +Y 
Sbjct: 21  TVSWERSTTPDITGYRITTTPTNG-QQGNSLEEVVHAD------QSSCTFDNLSPGLEYN 73

Query: 219 ASVLAKNRFGWSRPSKAYV 237
            SV        S P    +
Sbjct: 74  VSVYTVKDDKESVPISDTI 92

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1 Length = 120

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 9/85 (10%)

Query: 159 RLVWQV---DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFT 215
            L W +   +   G  +  L+F   EE     +  +   G          + + GL+  T
Sbjct: 33  ELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGY------ATRHVVEGLEPRT 86

Query: 216 QYEASVLAKNRFGWSRPSKAYVFAT 240
            Y+  +   +  G    S     AT
Sbjct: 87  LYKFRLKVTSPSGEYEYSPVVSVAT 111

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 7/120 (5%)

Query: 118 GNYMCQASNNLGSSQQFIQL--SGIPNIPVFQKSSRRLGPDGYRLVWQ--VDTYSGIIQY 173
           G   C  SN  G + Q  +    G+P  P  +     L      + W    +     + Y
Sbjct: 136 GVKKC-CSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIY 194

Query: 174 LLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS 233
           +++ R    + P  +    +          +   +T ++    Y+  V A N  G    +
Sbjct: 195 VVQRRWNYGIHPSEDD--ATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFT 252

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 43.0 bits (100), Expect = 5e-05
 Identities = 31/243 (12%), Positives = 67/243 (27%), Gaps = 34/243 (13%)

Query: 21  KLAGLYQCIASNNIGESTSKNFIVNVIYPPEV------------SVEKQWIHTAPDMRAE 68
           + +G+ +C  SN  G +      +    P +              +E +W          
Sbjct: 133 ECSGVKKC-CSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEP 191

Query: 69  IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 128
           +I  V       +    D           +  ++++   L        +  +   A N  
Sbjct: 192 VIYVVQRRWNYGIHPSEDDA----THWQTVAQTTDERVQLTDIRPSRWY-QFRVAAVNVH 246

Query: 129 GSSQ-----QFIQLSGIPNIP-------VFQKSSRRLGPDGYRLVWQVDTYSG--IIQYL 174
           G+       +  + S  P+ P       +   +    G     +VW +       +  Y 
Sbjct: 247 GTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYK 306

Query: 175 LKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSK 234
           + +      +    +            +  S  +  LQ    Y   + A   +G +R   
Sbjct: 307 VFWSWMV--SSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKS 364

Query: 235 AYV 237
           A V
Sbjct: 365 AKV 367

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 16/141 (11%), Positives = 38/141 (26%), Gaps = 4/141 (2%)

Query: 100 VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR 159
           + S K SL       T+    + +       +Q   Q               + G    +
Sbjct: 362 LKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVK 421

Query: 160 LVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEA 219
           + W+      + +Y +++               S    +G  +     +  L    +Y+ 
Sbjct: 422 VYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEAS----SGMTHENYIILQDLSFSCKYKV 477

Query: 220 SVLAKNRFGWSRPSKAYVFAT 240
           +V        S+    +    
Sbjct: 478 TVQPIRPKSHSKAEAVFFTTP 498

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 21/129 (16%), Positives = 37/129 (28%), Gaps = 17/129 (13%)

Query: 124 ASNNLGSSQ------QFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQ----VDTYSGIIQY 173
           A N +G+S              +P         +   P+   + W     ++  +    Y
Sbjct: 81  AFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHY 140

Query: 174 LLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS 233
            + ++       W N  I             +  I     F +Y   V+A N  G S  +
Sbjct: 141 YVSWKRDIPAAAWENNNIF-------DWRQNNIVIADQPTFVKYLIKVVAINDRGESNVA 193

Query: 234 KAYVFATEG 242
              V    G
Sbjct: 194 AEEVVGYSG 202

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 Length = 205

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 14/97 (14%)

Query: 141 PNIPVFQKSSRRLGPDGYRLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLA 198
           P +      + +       + W+   D  S I+ Y ++F        W            
Sbjct: 9   PKLTGITCQADKA-----EIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPN--- 60

Query: 199 GPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKA 235
               T S  +  +  +  Y   V+A N+ G S PS  
Sbjct: 61  ----TDSSFVVQMSPWANYTFRVIAFNKIGASPPSAH 93

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 11/95 (11%), Positives = 32/95 (33%), Gaps = 10/95 (10%)

Query: 67  AEIICNVYANPPAKVEWFR--------DGTAITLGGRIDM-HVSSEKHSLLVRHIKDTDF 117
             + C       + ++W          +   +    +  + H S+ + S+ V ++   D 
Sbjct: 19  LTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDE 78

Query: 118 GNYMCQASNN-LGSSQQFIQLSGIPNIPVFQKSSR 151
           G Y C   ++ + + +  + +         +  S 
Sbjct: 79  GVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYPSH 113

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 12/76 (15%), Positives = 22/76 (28%), Gaps = 9/76 (11%)

Query: 67  AEIICNVYANPPAKVEWFRDGTAITLGGRID---------MHVSSEKHSLLVRHIKDTDF 117
           A + C V  N    ++W                       +  S  + S+ V  +  +D 
Sbjct: 24  AILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDE 83

Query: 118 GNYMCQASNNLGSSQQ 133
           G Y C        + +
Sbjct: 84  GQYTCSLFTMPVKTSK 99

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 15/106 (14%)

Query: 138 SGIPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDG 195
             + +I V + S   L      L W V       ++ Y +K+ E+    P     + +  
Sbjct: 9   PAVSDIRVTRSSPSSL-----SLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSE 63

Query: 196 SLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
           +           + GL+    Y   V A++  G+    + +   T+
Sbjct: 64  N--------RAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQ 101

>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 132

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 9/74 (12%)

Query: 169 GIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
           G I  Y +++R+    +     ++             S  I GL   T+Y   V A    
Sbjct: 49  GQITGYKIRYRKASRKSDVTETLVSGT--------QLSQLIEGLDRGTEYNFRVAALTIN 100

Query: 228 GWSRPSKAYVFATE 241
           G    +      T 
Sbjct: 101 GTGPATDWLSAETF 114

>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 103

 Score = 43.6 bits (103), Expect = 4e-06
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 10/77 (12%)

Query: 159 RLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
           ++ W     ++  +  Y + + E    +P +   +P   S        +  I+GL+    
Sbjct: 25  KISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYS--------TATISGLKPGVD 76

Query: 217 YEASVLAKNRFGWSRPS 233
           Y  +V A + F      
Sbjct: 77  YTITVYAYDTFFPGYEP 93

>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 134

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 7/74 (9%)

Query: 169 GIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
           G+I  Y + +   +     R++V              S+++ GL+ +T+Y   V A    
Sbjct: 49  GVITQYSVAYEAVDGEDRGRHVVDGISRE------HSSWDLVGLEKWTEYRVWVRAHTDV 102

Query: 228 GWSRPSKAYVFATE 241
           G    S   +  T+
Sbjct: 103 GPGPESSPVLVRTD 116

>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell adhesion, coiled coil, EGF-like domain, extracellular matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A 1ten_A Length = 104

 Score = 43.2 bits (102), Expect = 5e-06
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 9/84 (10%)

Query: 154 GPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQL 213
                 + W   +   +  + L +  ++       I +  D           Y+I  L+ 
Sbjct: 15  TDTTALITWMPPS-QPVDGFELTYGIKDVPGDRTTIDLTED--------ENQYSIGNLKP 65

Query: 214 FTQYEASVLAKNRFGWSRPSKAYV 237
            T+YE S++++     S P+K   
Sbjct: 66  DTEYEVSLISRRGDMSSNPAKETF 89

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A Length = 215

 Score = 45.0 bits (106), Expect = 5e-06
 Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 21/131 (16%)

Query: 123 QASNNLG---SSQQFIQLSGI-----PNIPVFQKSSRRLGPDGYRLVWQVDTYSG--IIQ 172
           +A N LG   S               P+      S         +L W   +     I++
Sbjct: 81  EAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEEL--SSILKLTWTNPSIKSVIILK 138

Query: 173 YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG---W 229
           Y +++R ++  + W  I               S+ +  L+ FT+Y   +      G   W
Sbjct: 139 YNIQYRTKDA-STWSQIPPEDT-----ASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYW 192

Query: 230 SRPSKAYVFAT 240
           S  S+     T
Sbjct: 193 SDWSEEASGIT 203

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 44.9 bits (105), Expect = 6e-06
 Identities = 17/151 (11%), Positives = 45/151 (29%), Gaps = 35/151 (23%)

Query: 8   YNRESLDLDRVT-LKLAGLYQCIASNNIGEST-----------------SKNFIVNVIYP 49
            + + L L   + ++ +G Y C    +   +                  +K         
Sbjct: 41  KHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDA 100

Query: 50  PEVSVEKQWIHTAPDMRAE-------IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS 102
            +   +         +          + C +       ++W +DG+ I+        +++
Sbjct: 101 KKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKT---IKWLKDGSIIS-------PLNA 150

Query: 103 EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ 133
            K++  + +      G Y CQ +    +  Q
Sbjct: 151 TKNTWNLGNNAKDPRGTYQCQGAKETSNPLQ 181

>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 119

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 9/68 (13%)

Query: 169 GIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
           GI+  Y + + E           +P+         T  Y +TGL   T Y   V A    
Sbjct: 46  GILTGYRISWEEYNRTNTRVTHYLPNV--------TLEYRVTGLTALTTYTIEVAAMTSK 97

Query: 228 GWSRPSKA 235
           G  + S +
Sbjct: 98  GQGQVSAS 105

>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 98

 Score = 42.9 bits (100), Expect = 6e-06
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 8/74 (10%)

Query: 155 PDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214
           P+ + + W     S I +Y+L++R +  +  W+   IP         +  SY I GL+  
Sbjct: 20  PNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPG--------HLNSYTIKGLKPG 71

Query: 215 TQYEASVLAKNRFG 228
             YE  +++  ++G
Sbjct: 72  VVYEGQLISIQQYG 85

>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens} Length = 197

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 12/88 (13%)

Query: 159 RLVWQVDTYSG---IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFT 215
            L W      G   I  Y+++ RE      +  +               S+ +  LQ   
Sbjct: 23  TLTWDPPLLDGGSKIKNYIVEKRESTRKA-YSTVATNCH--------KTSWKVDQLQEGC 73

Query: 216 QYEASVLAKNRFGWSRPSKAYVFATEGA 243
            Y   VLA+N +G   P++         
Sbjct: 74  SYYFRVLAENEYGIGLPAETAESVKASE 101

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 14/126 (11%), Positives = 34/126 (26%), Gaps = 18/126 (14%)

Query: 123 QASNNLGSSQ--QFIQLSGIP---NIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKF 177
               +   S       +  +P   ++         +     R+ W       +  +L+++
Sbjct: 76  YTVKDDKESVPISDTIIPAVPPPTDLRFTNIGPDTM-----RVTWAPPPSIDLTNFLVRY 130

Query: 178 REREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYV 237
              +       + I             +  +T L   T+Y  SV +      S P +   
Sbjct: 131 SPVKNEEDVAELSISPS--------DNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQ 182

Query: 238 FATEGA 243
                +
Sbjct: 183 KTGLDS 188

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 18/126 (14%), Positives = 31/126 (24%), Gaps = 19/126 (15%)

Query: 123 QASNNLGSS-----QQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKF 177
            +      S     +Q   L     I     ++         + W     + I  Y ++ 
Sbjct: 167 SSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSF-----TVHWIAPR-ATITGYRIRH 220

Query: 178 REREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYV 237
                    R   +P            S  +T L   T+Y  S++A N    S       
Sbjct: 221 HPEHFSGRPREDRVPHS--------RNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQ 272

Query: 238 FATEGA 243
                 
Sbjct: 273 STVSDV 278

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 19/111 (17%), Positives = 31/111 (27%), Gaps = 9/111 (8%)

Query: 123 QASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREE 182
            A N    S   I      +            P    + W       +  Y + + E   
Sbjct: 257 VALNGREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAPA-VTVRYYRITYGETGG 315

Query: 183 LTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS 233
            +P +   +P            +  I+GL+    Y  +V A    G S  S
Sbjct: 316 NSPVQEFTVPGS--------KSTATISGLKPGVDYTITVYAVTGRGDSPAS 358

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A Length = 368

 Score = 41.7 bits (98), Expect = 9e-05
 Identities = 13/86 (15%), Positives = 20/86 (23%), Gaps = 9/86 (10%)

Query: 159 RLVWQVDTYSGIIQYLLKFREREELT-PWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY 217
            + W+  T   I  Y +               V+ +D          S     L    +Y
Sbjct: 20  TVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHAD--------QSSCTFDNLSPGLEY 71

Query: 218 EASVLAKNRFGWSRPSKAYVFATEGA 243
             SV        S P    +      
Sbjct: 72  NVSVYTVKDDKESVPISDTIIPAVPP 97

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 42.8 bits (101), Expect = 8e-06
 Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 11/76 (14%)

Query: 169 GIIQ-YLLKFRER--EELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKN 225
           G I  Y+L +       +  W    I  D          ++ I  L L T Y   + A+N
Sbjct: 39  GKITAYILFYTLDKNIPIDDWIMETISGD--------RLTHQIMDLNLDTMYYFRIQARN 90

Query: 226 RFGWSRPSKAYVFATE 241
             G    S   +F T 
Sbjct: 91  SKGVGPLSDPILFRTL 106

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 159 RLVWQV--DTYSGIIQYLLKFREREELTPWR----NIVIPSDGSLAGPIYTQSYNITGLQ 212
            L W V  +    I+ + +++R   +   W+    NI        +    + + ++T L+
Sbjct: 19  MLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLK 78

Query: 213 LFTQYEASVLAKNRFGWSRPSKA 235
               Y   +LA      ++ S  
Sbjct: 79  PQHTYRFRILAVYSNNDNKESNT 101

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A Length = 214

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 10/78 (12%)

Query: 159 RLVWQVDTYSG---IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFT 215
            L W + + +    I  Y   +R       +    I          + +S+ I  L+  T
Sbjct: 133 VLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIE-------GAHARSFKIAPLETAT 185

Query: 216 QYEASVLAKNRFGWSRPS 233
            YE  + + +    S  S
Sbjct: 186 MYEFKLQSFSAASASEFS 203

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 43.6 bits (102), Expect = 9e-06
 Identities = 16/126 (12%), Positives = 37/126 (29%), Gaps = 10/126 (7%)

Query: 17  RVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-AEIICNVYA 75
           + T       Q + S ++G       + ++    + S       T        + C V  
Sbjct: 5   KETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKD 64

Query: 76  NPPAKVEWFRDGTAI--------TLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASN 126
           +  + ++W                   RI +   +  + S+ + ++   D G Y C    
Sbjct: 65  HEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFT 124

Query: 127 NLGSSQ 132
               + 
Sbjct: 125 MPVRTA 130

>3k2m_C Monobody HA4; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A 1fna_A Length = 101

 Score = 42.5 bits (100), Expect = 9e-06
 Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 9/78 (11%)

Query: 159 RLVWQVDTYSGIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY 217
            + W     S  +  Y + + E    +P +   +P   S        +  I+GL     Y
Sbjct: 22  LISWDAPMSSSSVYYYRITYGETGGNSPVQEFTVPYSSS--------TATISGLSPGVDY 73

Query: 218 EASVLAKNRFGWSRPSKA 235
             +V A            
Sbjct: 74  TITVYAWGEDSAGYMFMY 91

>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 116

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 13/85 (15%)

Query: 159 RLVWQVDTYSG--IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
            + W+        I  Y L + E+      +++ +           + SY I GL+ +T+
Sbjct: 35  TVTWETPVSGNGEIQNYKLYYMEKGT-DKEQDVDVS----------SHSYTINGLKKYTE 83

Query: 217 YEASVLAKNRFGWSRPSKAYVFATE 241
           Y   V+A N+ G    +      T 
Sbjct: 84  YSFRVVAYNKHGPGVSTPDVAVRTL 108

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 11/74 (14%)

Query: 169 GIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
           G I  Y ++ R+           +  +           Y  TGL+  +QY   V A    
Sbjct: 59  GFITGYKIRHRKTTR--RGEMETLEPN--------NLWYLFTGLEKGSQYSFQVSAMTVN 108

Query: 228 GWSRPSKAYVFATE 241
           G   PS  Y   T 
Sbjct: 109 GTGPPSNWYTAETP 122

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A Length = 303

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 43/253 (16%), Positives = 73/253 (28%), Gaps = 43/253 (16%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 71
           S+    +      L   I +    E       +    PPE                 + C
Sbjct: 66  SVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKN-------------LSC 112

Query: 72  NVYANPPAKVEWF--RDG---TAITLGGRIDMHVSSEKHSLLVRHI-----KDTDFGNYM 121
            V      + EW   R+    T  TL      H  ++  +             T +   +
Sbjct: 113 IVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNI 172

Query: 122 C---QASNNLG---SSQQFIQLSGI--PNIPVFQK-SSRRLGPDGYRLVWQVDTYSG--I 170
               +A N LG   S            PN P      +        +L W   +     I
Sbjct: 173 EVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVII 232

Query: 171 IQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG-- 228
           ++Y +++R ++  + W  I      S        S+ +  L+ FT+Y   +      G  
Sbjct: 233 LKYNIQYRTKDA-STWSQIPPEDTAST-----RSSFTVQDLKPFTEYVFRIRCMKEDGKG 286

Query: 229 -WSRPSKAYVFAT 240
            WS  S+     T
Sbjct: 287 YWSDWSEEASGIT 299

>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1 Length = 107

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 21/103 (20%)

Query: 141 PNIPVFQKSSRRLGPDGYRLVWQ---VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSL 197
            ++ + +K  R+L      L W         G + Y L    ++E               
Sbjct: 14  LSLKLVKKEPRQL-----ELTWAGSRPRNPGGNLSYELHVLNQDEEWHQM---------- 58

Query: 198 AGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFAT 240
              +      +T LQ  T Y   V      G    S  + F T
Sbjct: 59  ---VLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT 98

>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 12/85 (14%)

Query: 159 RLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
            + W   ++    +  Y++ +           + + S          + Y+I  L+  + 
Sbjct: 34  IMSWTPPLNPNIVVRGYIIGYGVGSP--YAETVRVDSK--------QRYYSIERLESSSH 83

Query: 217 YEASVLAKNRFGWSRPSKAYVFATE 241
           Y  S+ A N  G   P         
Sbjct: 84  YVISLKAFNNAGEGVPLYESATTRS 108

>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design, S de novo protein; HET: DIO; 1.00A {Synthetic} Length = 98

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 10/85 (11%)

Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
            + W   + + I  Y + +         + + +P   +        S  ITGL    +Y 
Sbjct: 19  TVSWTPPS-ATITGYRITYTPSNGPGEPKELTVPPSST--------SVTITGLTPGVEYV 69

Query: 219 ASVLAKNRFGWSRPSKAYVFATEGA 243
            SV A      S P       T G 
Sbjct: 70  VSVYALKDNQESPPLVG-TQTTGGH 93

>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 105

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 19/86 (22%), Positives = 25/86 (29%), Gaps = 12/86 (13%)

Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
            L W          YLL F         + I++P            S+ + GL   T Y 
Sbjct: 25  LLTWTEPP-VRPAGYLLSFHTPGG--QTQEILLPGG--------ITSHQLLGLFPSTSYN 73

Query: 219 ASVLAKNRFGWSRPSKAYVFATEGAE 244
           A + A        P     F T G  
Sbjct: 74  ARLQAMWGQSLLPPVST-SFTTGGLR 98

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 17/130 (13%), Positives = 35/130 (26%), Gaps = 10/130 (7%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV---IYPPEVSVEKQWIHTAPDMRAE 68
           S+ +  +     G Y+C+      ++  +  +  V   +     +               
Sbjct: 66  SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRR 125

Query: 69  IICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEK----HSLLVRHIKDTDFGNYMCQ 123
           IIC+     P   + W  +G  +             +     S L      T   ++MC 
Sbjct: 126 IICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLD--FNMTTNHSFMCL 183

Query: 124 ASNNLGSSQQ 133
                    Q
Sbjct: 184 IKYGHLRVNQ 193

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 11/75 (14%)

Query: 170 IIQYLLKFREREE----LTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKN 225
           I  Y + +    +    + P + +++            +   I  L+    Y  +V A+N
Sbjct: 129 ITAYEVCYGLVNDDNRPIGPMKKVLVD-------NPKNRMLLIENLRESQPYRYTVKARN 181

Query: 226 RFGWSRPSKAYVFAT 240
             GW    +A +   
Sbjct: 182 GAGWGPEREAIINLA 196

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A Length = 234

 Score = 41.7 bits (98), Expect = 8e-05
 Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 9/72 (12%)

Query: 170 IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW 229
            + Y +K+  + + +     ++ S           S  +T L  +  YE  V A    G 
Sbjct: 33  PMGYRVKYWIQGD-SESEAHLLDSK--------VPSVELTNLYPYCDYEMKVCAYGAQGE 83

Query: 230 SRPSKAYVFATE 241
              S      T 
Sbjct: 84  GPYSSLVSCRTH 95

>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 125

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 2/73 (2%)

Query: 169 GIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
           G +Q Y + + + +  +   N        L          + GL+ F+ Y  +V   N  
Sbjct: 45  GHLQGYRIYYWKTQSSSKR-NRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGK 103

Query: 228 GWSRPSKAYVFAT 240
           G    S   VF T
Sbjct: 104 GEGPASPDRVFNT 116

>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 137

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 9/77 (11%)

Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
             +  Y +      +   ++++ +  +          +  +  L+    Y A V A+   
Sbjct: 55  PELYGYEVLISSTGKDGKYKSVYVGEE---------TNITLNDLKPAMDYHAKVQAEYNS 105

Query: 228 GWSRPSKAYVFATEGAE 244
               PS+A +F T   E
Sbjct: 106 IKGTPSEAEIFTTLSCE 122

>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens} Length = 206

 Score = 42.4 bits (99), Expect = 4e-05
 Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 19/127 (14%)

Query: 123 QASNNLG---SSQQFIQLSG--IPNIPVFQKSSRRLGPDGYRLVWQVDTY-SGIIQYLLK 176
           + +++LG   S    +       P  P   K+   +     ++ W+   +    +Q+ ++
Sbjct: 87  RINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPENNLQFQIR 146

Query: 177 FREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG------WS 230
           +    +   W+   +           ++S ++    L   Y   V  K   G      WS
Sbjct: 147 YGLSGKEVQWKMYEV-------YDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWS 199

Query: 231 RPSKAYV 237
            P+   V
Sbjct: 200 NPAYTVV 206

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 40.8 bits (95), Expect = 4e-05
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 10/101 (9%)

Query: 42  FIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP--PAKVEWFRDGTAI--------T 91
           F+ +    P+++V+ +             C+  ++   P    W  D  A+         
Sbjct: 3   FVCDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYA 62

Query: 92  LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
                   +      L +R+++ T  G Y C  SN+ GSS 
Sbjct: 63  HLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSY 103

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 42.8 bits (99), Expect = 5e-05
 Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 11/116 (9%)

Query: 47  IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS 106
           +      VE  W   AP     + C+        + W  D +           V     +
Sbjct: 4   LKKDVYVVELDWYPDAPGEMVVLTCDTP--EEDGITWTLDQS---------SEVLGSGKT 52

Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVW 162
           L ++  +  D G Y C     + S    +       I        +  P     + 
Sbjct: 53  LTIQVKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLR 108

>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A Length = 215

 Score = 42.1 bits (98), Expect = 5e-05
 Identities = 21/161 (13%), Positives = 41/161 (25%), Gaps = 24/161 (14%)

Query: 97  DMHVSSEKHSLLVRHIKDTDFGNY--MCQASNNLG---SSQQFIQL--SGIPNIPVFQKS 149
           D      +++  +       +       QA N LG   S +  +          P+ Q  
Sbjct: 58  DCVAKKRQNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQAL 117

Query: 150 SRRLG-----PDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIY 202
                     P    L W+    +     +  L+++ + +   W  +          P  
Sbjct: 118 DIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHL-------PSS 170

Query: 203 TQSYNITGLQLFTQYEASVLAKNRFG---WSRPSKAYVFAT 240
              + + GL     Y   +          WS  S       
Sbjct: 171 KDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRP 211

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 23/117 (19%)

Query: 129 GSSQQFIQLS--------GIPNIPVFQKSSRRLGPDGYRLVWQ--VDTYSGIIQYLLKFR 178
           GSS +   L           P   +     R +      L W    D  S +I+Y+L+  
Sbjct: 4   GSSGRSAHLRVRQLPHAPEHPVATLSTVERRAI-----NLTWTKPFDGNSPLIRYILEMS 58

Query: 179 EREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKA 235
           E     PW  ++   D          S  + GL     Y+  + A N  G  + SK 
Sbjct: 59  ENN--APWTVLLASVDPK------ATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKD 107

>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 103

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 15/86 (17%)

Query: 159 RLVWQ---VDTYSGIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214
            L W    +   +G I  Y + FR+       +NI                + +TGL+  
Sbjct: 26  ELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITT-----------DTRFTLTGLKPD 74

Query: 215 TQYEASVLAKNRFGWSRPSKAYVFAT 240
           T Y+  V A    G    S +    T
Sbjct: 75  TTYDIKVRAWTSKGSGPLSPSIQSRT 100

>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 153 LGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQ 212
             PD  ++ W       ++ Y L +     L P +++ +P   S           +  LQ
Sbjct: 19  ETPDSLQVSWTPPL-GRVLHYWLTYAPASGLGPEKSVSVPGARS--------HVTLPDLQ 69

Query: 213 LFTQYEASVLAKNRFGWSRPSKA 235
             T+Y   V A    G S    A
Sbjct: 70  AATKYRVLVSAIYAAGRSEAVSA 92

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 14/79 (17%), Positives = 24/79 (30%), Gaps = 11/79 (13%)

Query: 160 LVWQ---VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
           L W+        GI  YL+++        W             P+    + +  L    +
Sbjct: 27  LKWRPPDRIGAGGIDGYLVEYCLEGSEE-WVPAN-------KEPVERCGFTVKDLPTGAR 78

Query: 217 YEASVLAKNRFGWSRPSKA 235
               V+  N  G S P+  
Sbjct: 79  ILFRVVGVNIAGRSEPATL 97

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 41.8 bits (97), Expect = 8e-05
 Identities = 33/242 (13%), Positives = 58/242 (23%), Gaps = 34/242 (14%)

Query: 24  GLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC--------NVYA 75
               C  +            +   YPP +      +       + +IC        ++  
Sbjct: 73  AFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCL-MNLTTSS-LICQWEPGPETHLPT 130

Query: 76  NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM--CQASNNLG---S 130
           +   K    R          +D      +    +       + N     QA N LG   S
Sbjct: 131 SFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMS 190

Query: 131 SQQFIQLSGI-----PNIPVFQKSSRRLGPDGYRLVWQ----VDTYSGIIQYLLKFRERE 181
            Q  +    +     P +     S     P    L               +  L+ + + 
Sbjct: 191 PQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQR 250

Query: 182 ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG---WSRPSKAYVF 238
               W  +          P+    Y + GL   T Y   +          WS  S +   
Sbjct: 251 GEASWALVGP-------LPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLEL 303

Query: 239 AT 240
            T
Sbjct: 304 RT 305

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1 Length = 313

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 24/172 (13%), Positives = 50/172 (29%), Gaps = 6/172 (3%)

Query: 74  YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN---LGS 130
           + +P  ++ W         G +  +   +++  + + H+  T      C  +        
Sbjct: 30  HLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQ-AFLSCSLNWGNSLQIL 88

Query: 131 SQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGI-IQYLLKFREREELTPWRNI 189
            Q  ++    P IP        L        W+    + +   + LK  +       +  
Sbjct: 89  DQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGD 148

Query: 190 VIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
            I       G     S     L L+      V A+N  G S   +  +   +
Sbjct: 149 SILDCVPKDGQ-SHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMD 199

>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like modifier, S NOVO protein; 2.40A {Artificial gene} Length = 97

 Score = 39.7 bits (93), Expect = 9e-05
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 8/66 (12%)

Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
           S +  Y + + E    +P +   +P   S        +  I+GL     Y  +V A   +
Sbjct: 30  SSVSYYRITYGETGGNSPVQEFTVPGSSS--------TATISGLSPGVDYTITVYAYYSY 81

Query: 228 GWSRPS 233
                S
Sbjct: 82  YDLYYS 87

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score = 40.0 bits (94), Expect = 9e-05
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 159 RLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
            + W    +    I  + +++++ +++  W         S        S  ITGL+    
Sbjct: 35  YVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPS------RLSVEITGLEKGIS 88

Query: 217 YEASVLAKNRFGWSRPSKA 235
           Y+  V A N  G S PS  
Sbjct: 89  YKFRVRALNMLGESEPSAP 107

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 15/136 (11%)

Query: 12  SLDLDRVTLKLAGLYQCIASN------NIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-D 64
           SL +    ++  G Y            +  ++     +  +I  P++   +      P  
Sbjct: 83  SLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTR 142

Query: 65  MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 124
           +   +  +  A PP    W  +  +       +   SSE   L +    +    N  CQ 
Sbjct: 143 LSCSLPGSCEAGPPLTFSWTGNALSPLDP---ETTRSSE---LTLTPRPEDHGTNLTCQM 196

Query: 125 SNNLG--SSQQFIQLS 138
                  ++++ +QL+
Sbjct: 197 KRQGAQVTTERTVQLN 212

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 113

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 9/74 (12%)

Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
           +    Y ++++              +         T SY +TGL+  T YE SV+     
Sbjct: 41  TDSRYYTVRWKTNIPANTKYKNANAT---------TLSYLVTGLKPNTLYEFSVMVTKGR 91

Query: 228 GWSRPSKAYVFATE 241
             S  S      T 
Sbjct: 92  RSSTWSMTAHGTTF 105

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 110

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 13/84 (15%)

Query: 160 LVWQVDTYSG---IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
           L W      G   I  Y ++    E+    R +                  ++ L     
Sbjct: 28  LRWGPPLVDGGSPISCYSVEMSPIEK-DEPREVY---------QGSEVECTVSSLLPGKT 77

Query: 217 YEASVLAKNRFGWSRPSKAYVFAT 240
           Y   + A N+ G+   S+     T
Sbjct: 78  YSFRLRAANKMGFGPFSEKCDITT 101

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 12/84 (14%), Positives = 21/84 (25%), Gaps = 12/84 (14%)

Query: 67  AEIICNVYANPPAK---VEWFRD---GTAITLGGRIDMHVSSEKHS------LLVRHIKD 114
           A ++  V          ++WF+          G R     S    S      L +  +  
Sbjct: 30  AVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVL 89

Query: 115 TDFGNYMCQASNNLGSSQQFIQLS 138
            D G Y  +             + 
Sbjct: 90  GDRGYYRLEVKAKDTCDSCGFNID 113

>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol, hormone-growth complex; HET: CME EST; 2.95A {Homo sapiens} Length = 121

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 9/75 (12%)

Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
            + W       +  Y + + E    +P +   +P   S        +  I+GL+    Y 
Sbjct: 46  LISWDAPA-VTVRYYRITYGETGGNSPVQEFTVPGSKS--------TATISGLKPGVDYT 96

Query: 219 ASVLAKNRFGWSRPS 233
            +V A          
Sbjct: 97  ITVYAVTGLRLMLAG 111

>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 122

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 169 GIIQ-YLLKFREREELTP--WRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKN 225
           G+I+ Y + +RE    +   +  + + + G       ++ Y +  L+ F QY   V A N
Sbjct: 46  GVIRGYQIGYRENSPGSNGQYSIVEMKATGD------SEVYTLDNLKKFAQYGVVVQAFN 99

Query: 226 RFGWSRPSKAYVFAT 240
           R G    S      T
Sbjct: 100 RAGTGPSSSEINATT 114

>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 108

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 12/79 (15%), Positives = 19/79 (24%), Gaps = 10/79 (12%)

Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
           R+ W+      +    + +   E          P +          S  +  L   T Y 
Sbjct: 25  RVFWEGAP-RPVRLVRVTYVSSEG-GHSGQTEAPGN--------ATSAMLGPLSSSTTYT 74

Query: 219 ASVLAKNRFGWSRPSKAYV 237
             V      G S      V
Sbjct: 75  VRVTCLYPGGGSSTLTGRV 93

>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens} Length = 306

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 34/214 (15%), Positives = 61/214 (28%), Gaps = 35/214 (16%)

Query: 48  YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSL 107
            PPEV +E +               ++ +P  K         ++    + +  +S     
Sbjct: 103 GPPEVHLEAEDKAI----------VIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEE 152

Query: 108 LVR------HIKDTDFGNYMC---QASNNLG------SSQQFIQLSGIPNIPVFQKSSRR 152
            +        I         C   +A+          S    I+ +    +P  +     
Sbjct: 153 RIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVS 212

Query: 153 LGPDGYRLVWQVDTYSG--IIQYLLKFRER---EELTPWRNIVIPSDGSLAGPIYTQSYN 207
           +    Y L W     +    +Q+L  F +R     L  W+ I    +        TQ   
Sbjct: 213 VQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVK-----TTQCVF 267

Query: 208 ITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
              +     Y   V A +    S  S+   F TE
Sbjct: 268 PQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTE 301

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 10/75 (13%)

Query: 169 GIIQ-YLLKFREREELT-PWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNR 226
            I++ Y +++    +       + + S           S  +  L   TQY   V A N 
Sbjct: 45  KIVESYQIRYWAAHDKEEAANRVQVTSQ--------EYSARLENLLPDTQYFIEVGACNS 96

Query: 227 FGWSRPSKAYVFATE 241
            G   PS      T+
Sbjct: 97  AGCGPPSDMIEAFTK 111

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 11/79 (13%)

Query: 160 LVWQ---VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
           + W+       +G+  Y+L++   E    W              I    + ITGL    +
Sbjct: 26  MRWRPPDHIGAAGLDGYVLEYCF-EGTEDWIVAN-------KDLIDKTKFTITGLPTDAK 77

Query: 217 YEASVLAKNRFGWSRPSKA 235
               V A N  G S P   
Sbjct: 78  IFVRVKAVNAAGASEPKYY 96

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 12/76 (15%)

Query: 66  RAEIICNVYANPPAKVEWFRDGTAIT----------LGGRIDMHVSSEKHSLLVRHIKDT 115
            A    ++         WF +G  +              R  +     +H L++  +K  
Sbjct: 25  DAVFSLDLSTIIQ--GTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQ 82

Query: 116 DFGNYMCQASNNLGSS 131
           D G  +  +   +  S
Sbjct: 83  DSGALVGFSCPGVQDS 98

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 123

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 9/76 (11%)

Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
           S +  Y +++R     +        +         + SY  TGL+  T YE SV+     
Sbjct: 51  SEVRLYTVRWRTSFSASAKYKSEDTT---------SLSYTATGLKPNTMYEFSVMVTKNR 101

Query: 228 GWSRPSKAYVFATEGA 243
             S  S      T  A
Sbjct: 102 RSSTWSMTAHATTYEA 117

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 12/73 (16%)

Query: 169 GIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
           G +Q Y L   E       +NI +             SY + GL+ FT+Y    LA NR+
Sbjct: 36  GPVQGYRLFCTEVST-GKEQNIEVD----------GLSYKLEGLKKFTEYSLRFLAYNRY 84

Query: 228 GWSRPSKAYVFAT 240
           G    +      T
Sbjct: 85  GPGVSTDDITVVT 97

>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 121

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 9/85 (10%)

Query: 159 RLVWQ-VDTYSGIIQ-YLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
            + W+  +  +G IQ Y + +           +             +Q   I  L     
Sbjct: 36  LVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVAD-------SQITTIGNLVPQKT 88

Query: 217 YEASVLAKNRFGWSRPSKAYVFATE 241
           Y   VLA    G    S      T+
Sbjct: 89  YSVKVLAFTSIGDGPLSSDIQVITQ 113

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 12/79 (15%)

Query: 160 LVWQVDTYSG---IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
           L W      G   I  Y ++  +++ +  W  +            +  S  IT L +  +
Sbjct: 36  LTWTPPKDDGNAAITGYTIQKADKKSME-WFTV--------IEHYHRTSATITELVIGNE 86

Query: 217 YEASVLAKNRFGWSRPSKA 235
           Y   V ++N  G S  +  
Sbjct: 87  YYFRVFSENMCGLSEDATM 105

>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 126

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 11/85 (12%), Positives = 22/85 (25%), Gaps = 12/85 (14%)

Query: 159 RLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
            + W    +    +  Y + +         + I +            + Y I  L   + 
Sbjct: 44  VVSWTPPENQNIVVRGYAIGYGIGS--PHAQTIKVDYK--------QRYYTIENLDPSSH 93

Query: 217 YEASVLAKNRFGWSRPSKAYVFATE 241
           Y  ++ A N  G   P         
Sbjct: 94  YVITLKAFNNVGEGIPLYESAVTRP 118

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 10/90 (11%)

Query: 155 PDGYRLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQ 212
           P G  L W         +  Y+L+ R+  +   W  +        A         + GL 
Sbjct: 20  PRGVLLHWDPPELVPKRLDGYVLEGRQGSQ--GWEVL------DPAVAGTETELLVPGLI 71

Query: 213 LFTQYEASVLAKNRFGWSRPSKAYVFATEG 242
               YE  ++A      S PS     +T G
Sbjct: 72  KDVLYEFRLVAFAGSFVSDPSNTANVSTSG 101

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 Length = 283

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 13/85 (15%), Positives = 24/85 (28%), Gaps = 9/85 (10%)

Query: 159 RLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE 218
            + W     + +   LLK+             +              Y++  L+  ++YE
Sbjct: 32  FVEWTPPR-AKVDFILLKYGLVGGEGGKTTFRLQPP--------LSQYSVQALRPGSRYE 82

Query: 219 ASVLAKNRFGWSRPSKAYVFATEGA 243
            S+ A      S  S         A
Sbjct: 83  VSISAVRGTNESDASSTQFTTEIDA 107

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
           + I ++L++ +          ++I     L+     +S  +  L  FT Y   +   N  
Sbjct: 46  TSISRWLVEAQVGVVGEGEEWLLIHQ---LSNEPDARSMEVPDLNPFTCYSFRMRQVNIV 102

Query: 228 GWSRPSKA 235
           G S PS+ 
Sbjct: 103 GTSPPSQP 110

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 4/83 (4%)

Query: 45  NVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK 104
               P       Q +  AP+ R  + C +  +  A   W             +    S  
Sbjct: 496 ECPNPKPDKAPLQKVSLAPNSRYYLSCPM-ESRHATYSWRHKENVEQ---SCEPGHQSPN 551

Query: 105 HSLLVRHIKDTDFGNYMCQASNN 127
             L + ++    +G+Y C+A   
Sbjct: 552 CILFIENLTAQQYGHYFCEAQEG 574

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 12/129 (9%)

Query: 15  LDRVTLKLAGLYQCIASNNIGESTSKNF----IVNVIYPPEVSVEKQWIHTAPDMRAEII 70
           +D +    AG YQC            +     +  +   P +S + + +   P     + 
Sbjct: 68  IDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSAD-RGLVLMPGENISLT 126

Query: 71  CNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-SLLVRHIKDTDFGNYMCQASNNLG 129
           C+    P  +    ++G           H S E   +  +  +     G Y C    N  
Sbjct: 127 CSSAHIPFDRFSLAKEGELSLP-----QHQSGEHPANFSLGPVDLNVSGIYRCYGWYN-R 180

Query: 130 SSQQFIQLS 138
           S   +   S
Sbjct: 181 SPYLWSFPS 189

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 159 RLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
           +L W    D  S I ++++++ +        +      G       TQ+     L  +  
Sbjct: 34  QLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSG-------TQTTAQLNLSPYVN 86

Query: 217 YEASVLAKNRFGWSRPSKA-YVFATEGAE 244
           Y   V+A N  G S PS+A   + T+ +E
Sbjct: 87  YSFRVMAVNSIGKSLPSEASEQYLTKASE 115

>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex; HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 Length = 247

 Score = 39.4 bits (91), Expect = 4e-04
 Identities = 15/154 (9%), Positives = 48/154 (31%), Gaps = 20/154 (12%)

Query: 101 SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNI----PVFQKSSRRLGPD 156
                   ++  +   +  ++ Q  +     +Q  Q+  + N+         +  +L   
Sbjct: 92  EEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSES 151

Query: 157 GYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
              L W     +  +++L+++R   +   W    +              +++  +    +
Sbjct: 152 QLELNWNNRFLNHCLEHLVQYRTDWD-HSWTEQSVDY---------RHKFSLPSVDGQKR 201

Query: 217 YEASVLAKNRFG------WSRPSKAYVFATEGAE 244
           Y   V ++          WS  S    + +  ++
Sbjct: 202 YTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNTSK 235

>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix, dynamic fluctuations, conformational exchange, chaps, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 89

 Score = 37.0 bits (85), Expect = 5e-04
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 8/61 (13%)

Query: 168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF 227
           S I +Y+L++R +  +  W+   IP         +  SY I GL+    YE  +++  ++
Sbjct: 10  SHISKYILRWRPKNSVGRWKEATIPG--------HLNSYTIKGLKPGVVYEGQLISIQQY 61

Query: 228 G 228
           G
Sbjct: 62  G 62

>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A Length = 419

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 12/92 (13%)

Query: 156 DGYRLVWQV-DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214
           D Y L W+        I +  + + R++   W++    +  +        S  +  L+  
Sbjct: 334 DSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQN------AHSMALPALEPS 387

Query: 215 TQYEASVLAKNRFG-----WSRPSKAYVFATE 241
           T+Y A V  +         WS  S+A  + TE
Sbjct: 388 TRYWARVRVRTSRTGYNGIWSEWSEARSWDTE 419

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens} Length = 108

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 13/100 (13%)

Query: 144 PVFQKSSRRLGPDGYRLVWQVDTYSG--IIQYLLKFREREELTPWRNIVIPSDGSLAGPI 201
              Q S  R         W    ++   I +Y++++        W +    S+       
Sbjct: 12  RNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGS-KMWASQRAASN------- 63

Query: 202 YTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
                 I  L + T Y   V A    G    S +    T 
Sbjct: 64  ---FTEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTI 100

>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A Length = 210

 Score = 38.9 bits (90), Expect = 7e-04
 Identities = 21/151 (13%), Positives = 40/151 (26%), Gaps = 25/151 (16%)

Query: 105 HSLLVRHIKDTDFGNYMCQASNNLG---SSQQFIQLSGI-----PNIPVFQKSSRRLGPD 156
                ++         M  A+N +G   S + ++ ++ I     P     +         
Sbjct: 62  CHFGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKP 121

Query: 157 GYRLVWQ------VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITG 210
              + W       + T    + Y ++ +  +    W                   + I  
Sbjct: 122 YLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKA-AEWEIHFAGQQTE---------FKILS 171

Query: 211 LQLFTQYEASVLAKNRFG-WSRPSKAYVFAT 240
           L    +Y   V  K   G WS  S A     
Sbjct: 172 LHPGQKYLVQVRCKPDHGYWSAWSPATFIQI 202

>2b5i_C Cytokine receptor common gamma chain; four-helix bundle, fibronectin domain, cytokine-cytokine REC complex; HET: NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_C* 3qb7_C* 3qaz_C* Length = 199

 Score = 38.6 bits (89), Expect = 7e-04
 Identities = 15/154 (9%), Positives = 48/154 (31%), Gaps = 20/154 (12%)

Query: 101 SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNI----PVFQKSSRRLGPD 156
                   ++  +   +  ++ Q  +     +Q  Q+  + N+         +  +L   
Sbjct: 54  EEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSES 113

Query: 157 GYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ 216
              L W     +  +++L+++R   +   W    +              +++  +    +
Sbjct: 114 QLELNWNNRFLNHCLEHLVQYRTDWD-HSWTEQSVDY---------RHKFSLPSVDGQKR 163

Query: 217 YEASVLAKNRFG------WSRPSKAYVFATEGAE 244
           Y   V ++          WS  S    + +  ++
Sbjct: 164 YTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNTSK 197

>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 112

 Score = 37.3 bits (86), Expect = 9e-04
 Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 1/79 (1%)

Query: 154 GPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQL 213
                RL W+         +LL+F      T   +        L  P    S  +  L+ 
Sbjct: 21  TTSSLRLNWEAPP-GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRS 79

Query: 214 FTQYEASVLAKNRFGWSRP 232
            T Y  ++        +  
Sbjct: 80  GTLYSLTLYGLRGPHKADS 98

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 37.2 bits (86), Expect = 9e-04
 Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 3/56 (5%)

Query: 4   IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP---PEVSVEK 56
           + L     +L + +V  +    Y        G        + V+ P   P + +EK
Sbjct: 66  VRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEK 121

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	100.0
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.97
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.97
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.96
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.95
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.95
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.95
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.94
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.94
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.94
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.93
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.93
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.93
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.93
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.93
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.93
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.93
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.93
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.92
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.92
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.92
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.92
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.92
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.92
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.92
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.92
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.91
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.91
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.91
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.91
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.91
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.91
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.91
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.91
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.9
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.9
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.9
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.9
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.9
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.9
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.9
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.9
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.9
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.9
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.9
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.9
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.89
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.89
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.89
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.89
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.89
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.89
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.89
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.88
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.88
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.88
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.88
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.88
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.88
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.88
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.87
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.87
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.87
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.87
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.87
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.86
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.86
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.86
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.86
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.86
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.86
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.86
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.86
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.86
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.85
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.85
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.85
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.85
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.85
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.85
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.84
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.84
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.84
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.84
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.84
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.84
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.83
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.83
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.83
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.83
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.83
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.83
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.83
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.83
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.82
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.82
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.82
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.82
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.82
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.82
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.82
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.82
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.82
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.82
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.81
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.81
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.81
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.81
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.81
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.81
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.8
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.8
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.8
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.8
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.8
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.79
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.79
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.79
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.79
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.79
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.79
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.79
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.79
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.79
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.79
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.79
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.79
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.79
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.79
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.79
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.79
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.79
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.79
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.79
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.79
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.79
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.78
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.78
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.78
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.78
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.78
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.78
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.78
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.78
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.78
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.77
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.77
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.77
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.77
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.77
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.77
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.77
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.77
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.77
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.77
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.77
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.77
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.76
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.76
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.76
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.76
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.76
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.76
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.76
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.76
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.76
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.76
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.76
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.76
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.76
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.76
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.76
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.76
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.76
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.76
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.75
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.75
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.75
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.75
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.75
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.75
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.75
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.75
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.75
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.75
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.74
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.74
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.74
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.74
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.74
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.74
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.74
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.74
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.73
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.73
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.73
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.73
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.73
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.73
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.73
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.73
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.73
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.73
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.73
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.73
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.72
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.72
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.72
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.72
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.72
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.72
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.72
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.72
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.72
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.72
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.72
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.71
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.71
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.71
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.71
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.71
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.71
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.71
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.71
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.71
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.71
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.71
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.7
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.7
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.7
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.7
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.7
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.7
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.69
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.69
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.69
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.68
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.68
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.68
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.68
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.68
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.68
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.68
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.68
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.68
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.68
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.68
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.68
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.67
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.67
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.67
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.67
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.66
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.66
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.66
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.66
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.66
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.66
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.66
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.66
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.66
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.65
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.65
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.64
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.64
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.64
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.64
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.64
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.64
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.64
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.64
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.64
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.64
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.64
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.64
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.63
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.63
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.63
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.63
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.63
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.63
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.63
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.62
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.62
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.62
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.62
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.62
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.62
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.62
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.62
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.62
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.61
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.61
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	99.61
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.61
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.61
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.61
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.61
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.61
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.6
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.6
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.6
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.6
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.6
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.6
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.59
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.59
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.59
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.59
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.59
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.59
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.59
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.59
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.58
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.58
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.58
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.58
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.58
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.58
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.58
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.58
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.58
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.58
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.57
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.57
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.57
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.57
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.57
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.57
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.57
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.56
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.56
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.56
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.56
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.56
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.56
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.55
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.55
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.55
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.55
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.55
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.55
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.55
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	99.55
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.54
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	99.54
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.54
1he7_A	126	High affinity nerve growth factor receptor; transf	99.54
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.54
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.54
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.53
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	99.53
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.53
2crz_A	110	Fibronectin type-III domain containing protein 3A;	99.52
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.52
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.52
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.52
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.52
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.52
2db8_A	110	Tripartite motif protein 9, isoform 2; ring finger	99.51
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.51
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.51
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.51
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	99.51
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.51
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.51
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.51
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.51
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.5
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.5
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.5
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.5
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.49
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.49
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.49
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.49
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.49
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.49
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.49
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.49
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.49
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.48
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.48
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.48
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.48
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.48
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.48
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	99.48
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	99.47
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.47
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.47
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.47
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	99.47
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.47
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.46
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.46
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.46
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.46
2crm_A	120	Fibronectin type-III domain containing protein 3A;	99.46
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.46
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.46
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.46
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.46
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	99.46
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.46
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.46
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.45
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	99.45
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.45
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.45
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.45
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.45
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.44
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.44
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.44
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	99.43
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	99.43
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	99.43
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	99.43
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	99.43
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.42
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.42
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.42
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	99.42
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.42
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	99.42
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.42
1ujt_A	120	KIAA1568 protein; fibronectin type III domain, str	99.41
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	99.41
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.41
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.41
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.41
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.41
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.41
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	99.41
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.41
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.4
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.4
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	99.4
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.4
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	99.4
1oww_A	98	FN, fibronectin first type III module, CIG; fibron	99.4
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.4
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.39
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.39
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.39
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.39
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.39
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.39
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.39
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	99.38
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.38
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.37
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	99.37
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.37
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.37
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	99.37
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	99.37
1x4y_A	114	Biregional cell adhesion molecule-related/DOWN- re	99.37
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.36
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.36
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	99.36
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.36
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	99.36
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	99.36
1fnf_A	368	Fibronectin; RGD, extracellular matrix, cell adhes	99.36
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.36
2ee2_A	119	Contactin-1; neural cell surface protein F3, glyco	99.36
2ic2_A	115	CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin t	99.35
2haz_A	105	N-CAM 1, neural cell adhesion molecule 1; fibronec	99.35
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.35
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	99.35
2dn7_A	107	Receptor-type tyrosine-protein phosphatase F; LAR	99.35
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	99.35
1x5z_A	115	Receptor-type tyrosine-protein phosphatase delta;	99.35
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.34
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.34
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.34
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.34
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	99.34
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.34
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.34
2gee_A	203	Hypothetical protein; fibronectin, EIIIB, cancer,	99.33
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	99.33
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	99.33
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	99.33
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.33
3n1f_C	102	Cell adhesion molecule-related/DOWN-regulated BY;	99.33
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.33
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.32
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	99.32
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.32
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.32
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	99.32
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.32
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.31
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.31
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	99.31
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.31

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=100.00  E-value=1.1e-32  Score=213.42  Aligned_cols=231  Identities=25%  Similarity=0.355  Sum_probs=188.4

Q ss_pred             cceEEEe--ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCC
Q psy12131          2 KEIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA   79 (245)
Q Consensus         2 ~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~   79 (245)
                      +|+.+..  +.+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..+|.+...+....+..|+.+.|.|.+.|.|.+
T Consensus        52 ~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~  130 (389)
T 2jll_A           52 GRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG-HQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPA  130 (389)
T ss_dssp             SSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCC
T ss_pred             CeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCC-cceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCC
Confidence            4666654  3457999999999999999999999887 688999999999998777766678899999999999999999


Q ss_pred             eEEEEECCEEeccCC--cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe--cCCCCccccCccccCC
Q psy12131         80 KVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG--IPNIPVFQKSSRRLGP  155 (245)
Q Consensus        80 ~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~--~~~~p~~~~~~~~~~~  155 (245)
                      .+.|++++..+....  ++.+...+....|.|.++...|.|.|.|.|.|..|.....+.+.+  .|.+|..... .....
T Consensus       131 ~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~-~~~~~  209 (389)
T 2jll_A          131 SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKI-IELSQ  209 (389)
T ss_dssp             EEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEE-EEECS
T ss_pred             eEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEE-eeccC
Confidence            999999999887654  566666666788999999999999999999999998877766665  3444433322 23556


Q ss_pred             CeeEEEEEe---CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12131        156 DGYRLVWQV---DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP  232 (245)
Q Consensus       156 ~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~  232 (245)
                      ..+.|.|.+   .++.|+..|.++|+... ...|..+......        ..+.|.+|.+++.|.|+|.|.|..|.+.+
T Consensus       210 ~~~~l~w~~p~~~~g~pi~~y~v~~~~~~-~~~~~~~~~~~~~--------~~~~i~~l~~~~~y~~~v~A~N~~G~~~~  280 (389)
T 2jll_A          210 TTAKVSFNKPDSHGGVPIHHYQVDVKEVA-SEIWKIVRSHGVQ--------TMVVLNNLEPNTTYEIRVAAVNGKGQGDY  280 (389)
T ss_dssp             SCEEEEEECCSCCTTSCEEEEEEEEEETT-CSCCEEEECSTTC--------SEEEECSCCTTCEEEEEEEEEESSCBCCC
T ss_pred             CEEEEEEeCCCCCCCcceEEEEEEEEECC-CcccEEeeccCCc--------ceEEECCccCCCEEEEEEEEEcCCccCCC
Confidence            789999996   33458889999998875 6678765543332        67999999999999999999999999999


Q ss_pred             CcceEEecCCC
Q psy12131        233 SKAYVFATEGA  243 (245)
Q Consensus       233 s~~~~~~t~~~  243 (245)
                      |..+.+.|.+.
T Consensus       281 s~~~~~~t~~~  291 (389)
T 2jll_A          281 SKIEIFQTLPV  291 (389)
T ss_dssp             CCCEEEECCCC
T ss_pred             CcceEEEecCC
Confidence            99998888653

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=100.00  E-value=6.5e-32  Score=202.51  Aligned_cols=222  Identities=25%  Similarity=0.349  Sum_probs=180.5

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeec-----ceEEecCCCeEEEEEEEeecCCCeEEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-----QWIHTAPDMRAEIICNVYANPPAKVEWFR   85 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~-----~~~~~~~g~~~~l~C~~~~~~~~~~~w~~   85 (245)
                      ..|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..+|.+..+.     ....+..|+.+.|.|.+.+.|.+.+.|++
T Consensus        62 ~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~  140 (305)
T 2nzi_A           62 HQLIIASVTDDDATVYQVRATNQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK  140 (305)
T ss_dssp             EEEEESSCCGGGCSEEEEEEEETTEE-EEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEE
T ss_pred             EEEEEccCChhhCeEEEEEEEcCCCC-ccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEE
Confidence            37999999999999999999998877 6888899998877764432     34667889999999999999999999999


Q ss_pred             CCEEeccCCcEEEEecCceeEEEEcc-CCCCCCeEEEEEEEeCCceeEEEEEEEe--cCCCCccccCccccCCCeeEEEE
Q psy12131         86 DGTAITLGGRIDMHVSSEKHSLLVRH-IKDTDFGNYMCQASNNLGSSQQFIQLSG--IPNIPVFQKSSRRLGPDGYRLVW  162 (245)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~C~~~n~~g~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~l~~  162 (245)
                      ++..+....++.+........|.|.+ +...|.|.|+|.+.|..|.....+.+.+  .|.+|...... ......+.|.|
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~-~~~~~~v~l~w  219 (305)
T 2nzi_A          141 GQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVS-DVSRDSVNLTW  219 (305)
T ss_dssp             SSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEE-SCCSSCEEEEE
T ss_pred             CCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceee-eccCCEEEEEE
Confidence            99888877777776666778899999 9999999999999999998877766654  45566554332 35678999999


Q ss_pred             Ee---CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceE-E
Q psy12131        163 QV---DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYV-F  238 (245)
Q Consensus       163 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~-~  238 (245)
                      .+   +++.++..|.++++... ...|........         ..+.|.+|.+++.|.|+|.|.|.+|.+.+|.... +
T Consensus       220 ~~p~~~g~~~i~~y~v~~~~~~-~~~w~~~~~~~~---------~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~~~~~  289 (305)
T 2nzi_A          220 TEPASDGGSKITNYIVEKCATT-AERWLRVGQARE---------TRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPT  289 (305)
T ss_dssp             ECCSCCSBSCEEEEEEEEEETT-SCCEEEEEEESS---------SEEEECSCCSSCEEEEEEEEEETTEECCCCCCCCCE
T ss_pred             cCCccCCCCceeEEEEEEecCC-CCccEECccccC---------ceEEecCCCCCCeEEEEEEEEeCCcccCCcCCCCCE
Confidence            97   34568899999998875 678987655432         6799999999999999999999999999998655 4


Q ss_pred             ecCCCC
Q psy12131        239 ATEGAE  244 (245)
Q Consensus       239 ~t~~~~  244 (245)
                      ++.+.+
T Consensus       290 ~t~~~~  295 (305)
T 2nzi_A          290 ITKEDK  295 (305)
T ss_dssp             ECCC--
T ss_pred             EcCCcc
Confidence            444433

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.97  E-value=6.3e-29  Score=201.18  Aligned_cols=220  Identities=18%  Similarity=0.261  Sum_probs=173.2

Q ss_pred             EeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEEC
Q psy12131          7 LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD   86 (245)
Q Consensus         7 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~   86 (245)
                      ..+...|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++
T Consensus       343 ~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~  421 (570)
T 3b43_A          343 VESVAVLEMYNLSVEDSGDYTCEAHNAAGS-ASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKD  421 (570)
T ss_dssp             ETTEEEEEEESCCGGGCEEEEEEEEBTTBC-CEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEET
T ss_pred             ECCEEEEEECCCCcccCEEEEEEEEeCCCE-EEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEEC
Confidence            334466999999999999999999999988 6788899999999988888778888999999999999999999999999


Q ss_pred             CEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCccccC---ccccCCCeeEEEEE
Q psy12131         87 GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKS---SRRLGPDGYRLVWQ  163 (245)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~l~~~  163 (245)
                      +..+..+.++.+...+....|.|.++..+|.|.|.|.|.|..|.......+.+.. ||.+...   .....++.+.|.|.
T Consensus       422 g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~-~P~~~~~~~~~~~~~g~~~~l~c~  500 (570)
T 3b43_A          422 KRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA-PPRFVKKLSDISTVVGEEVQLQAT  500 (570)
T ss_dssp             TEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECC-CCEEEECCCCBCCBTTCCEEEEEE
T ss_pred             CEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEecc-CCcccccCCCceecCCCeEEEEEE
Confidence            9999888888777666677899999999999999999999999988877777653 4444332   23467889999999


Q ss_pred             eCCCCCceEEEEEEEeec---CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEE
Q psy12131        164 VDTYSGIIQYLLKFRERE---ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVF  238 (245)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~  238 (245)
                      +.+.+++.  ..|+++.+   .......+....        ....+.|..+...+.+.|.|.|.|.+|....+..|.|
T Consensus       501 ~~g~p~~~--v~W~k~~~~~~~~~~~~~~~~~~--------~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V  568 (570)
T 3b43_A          501 IEGAEPIS--VAWFKDKGEIVRESDNIWISYSE--------NIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV  568 (570)
T ss_dssp             EESCSSCC--CEEEETTEECCCCTTTEEECCCS--------SEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECC
T ss_pred             EecCCCCE--EEEEeCCeEeccCCCeEEEEECC--------CEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEE
Confidence            97765432  22444421   111111111111        1267889999999999999999999999887776654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.97  E-value=6.1e-28  Score=179.10  Aligned_cols=223  Identities=22%  Similarity=0.250  Sum_probs=168.7

Q ss_pred             EEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeec-ceEEecCCCeEEEEEEEeecCCCeEEE
Q psy12131          5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-QWIHTAPDMRAEIICNVYANPPAKVEW   83 (245)
Q Consensus         5 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~w   83 (245)
                      .+..+...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+|.+.... ....+..|+.+.|.|.+.+.|.+.+.|
T Consensus        55 ~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W  133 (284)
T 2rik_A           55 TLVENTATLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLW  133 (284)
T ss_dssp             EEETTEEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEE
T ss_pred             EEcCCEEEEEEecCCcccCEEEEEEEEECCce-EEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEE
Confidence            33445577999999999999999999998877 6888999999999876653 345678999999999999999999999


Q ss_pred             EECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCcccc--CccccCCCeeEEE
Q psy12131         84 FRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQK--SSRRLGPDGYRLV  161 (245)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~l~  161 (245)
                      ++++..+.....+.+........|.|.++..+|.|.|+|.+.|..|.....+.+.+...|.....  ......+..+.|.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~  213 (284)
T 2rik_A          134 YKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLE  213 (284)
T ss_dssp             EETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEE
T ss_pred             EECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEE
Confidence            99999988777777666666789999999999999999999999998888777776543322111  1234678899999


Q ss_pred             EEeCCCCCceEEEEEEEeec---CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEE
Q psy12131        162 WQVDTYSGIIQYLLKFRERE---ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVF  238 (245)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~  238 (245)
                      |.+.+.++. .+ .|+++..   ....+. +....        ....+.|.++...+.+.|+|.|.|..|....+..+.+
T Consensus       214 C~~~g~p~~-~v-~W~~~~~~~~~~~~~~-~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  282 (284)
T 2rik_A          214 CELQGTPPF-QV-SWHKDKRELRSGKKYK-IMSEN--------FLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL  282 (284)
T ss_dssp             EECBSSSCC-EE-EEEETTEEECBTTTEE-EEEET--------TEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEecCCC-EE-EEEECCEECcCCCCEE-EEEcC--------CEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEE
Confidence            999776543 23 2444432   112221 11111        1257889999999999999999999998766655554


Q ss_pred             e
Q psy12131        239 A  239 (245)
Q Consensus       239 ~  239 (245)
                      +
T Consensus       283 ~  283 (284)
T 2rik_A          283 K  283 (284)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.96  E-value=1.5e-27  Score=193.21  Aligned_cols=223  Identities=22%  Similarity=0.265  Sum_probs=168.4

Q ss_pred             EEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeec-ceEEecCCCeEEEEEEEeecCCCeEEE
Q psy12131          5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-QWIHTAPDMRAEIICNVYANPPAKVEW   83 (245)
Q Consensus         5 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~w   83 (245)
                      .+..+...|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..+|.+.... ....+..|+.+.|.|.+.|.|.|.+.|
T Consensus       247 ~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W  325 (570)
T 3b43_A          247 TLVENTATLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLW  325 (570)
T ss_dssp             EEETTEEEEEESSBCGGGCEEEEEEEEETTEE-EEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEE
T ss_pred             EEECCEEEEEEcccCcccCEEEEEEEECCCCc-EEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEE
Confidence            33444567999999999999999999999887 6888999999999876553 234467899999999999999999999


Q ss_pred             EECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCccccC---ccccCCCeeEE
Q psy12131         84 FRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKS---SRRLGPDGYRL  160 (245)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~l  160 (245)
                      ++++..+....++.+........|.|.++..+|.|.|+|.|.|..|.......|.+.. +|.+...   .....+..+.|
T Consensus       326 ~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~-~P~~~~~~~~~~~~~G~~v~l  404 (570)
T 3b43_A          326 YKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE-PPVFRKKPHPVETLKGADVHL  404 (570)
T ss_dssp             EETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEEC-CCEECSCCCCEEECTTCCEEE
T ss_pred             eECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecC-CCeeecCCCceeecCCCEEEE
Confidence            9999998877777766556677899999999999999999999999888777777653 3333222   23467889999


Q ss_pred             EEEeCCCCCceEEEEEEEeec---CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceE
Q psy12131        161 VWQVDTYSGIIQYLLKFRERE---ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYV  237 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~  237 (245)
                      .|.+.+.++.. + .|+++..   .+..+ .+.....        ...+.|.++...+.+.|+|.|.|.+|....+..+.
T Consensus       405 ~C~~~g~P~p~-v-~W~k~g~~l~~~~~~-~~~~~~~--------~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~  473 (570)
T 3b43_A          405 ECELQGTPPFQ-V-SWHKDKRELRSGKKY-KIMSENF--------LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSIT  473 (570)
T ss_dssp             EEEEESSSSCC-C-EEEETTEECCSSSSE-EEEEETT--------EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             EEEEecCCCCE-E-EEEECCEECcCCCCE-EEEEcCC--------EEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEE
Confidence            99997765432 2 2444432   11222 1211111        25688999999999999999999999876655555


Q ss_pred             Eec
Q psy12131        238 FAT  240 (245)
Q Consensus       238 ~~t  240 (245)
                      +..
T Consensus       474 v~~  476 (570)
T 3b43_A          474 LKA  476 (570)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            543

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.8e-26  Score=164.48  Aligned_cols=188  Identities=24%  Similarity=0.356  Sum_probs=147.8

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC--CcEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      .+|.+ ..+....+..|+.+.|.|.+.|.|.|.+.|++++..+...  .++.+........|.|.++...|.|.|.|.+.
T Consensus        18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   96 (215)
T 3mtr_A           18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAV   96 (215)
T ss_dssp             EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred             cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence            45666 4555678899999999999999999999999999988765  45666655567899999999999999999999


Q ss_pred             eCCceeEEEEEEEec--CCCCccccCccccCCCeeEEEEEe---CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcc
Q psy12131        126 NNLGSSQQFIQLSGI--PNIPVFQKSSRRLGPDGYRLVWQV---DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGP  200 (245)
Q Consensus       126 n~~g~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (245)
                      |..|.....+.+.+.  |.+|.....  .....++.|.|..   +++.|+..|.++|+... ...|.........    .
T Consensus        97 n~~g~~~~~~~l~v~~~P~~p~~~~~--~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~-~~~w~~~~~~~~~----~  169 (215)
T 3mtr_A           97 NRIGQESLEFILVQADTPSSPSIDQV--EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVG-EEVWHSKWYDAKE----A  169 (215)
T ss_dssp             CSSCEEEEEEEEEECCCCCCCEEEEE--EEETTEEEEEEECCSCCCSSCEEEEEEEEEETT-CCCCEEEEEEHHH----H
T ss_pred             ECCCceEEEEEEEECCCCCCCcceEE--EEecceEEEEEecCCccCCCceEEEEEEEEECC-CCccccccccccc----c
Confidence            999988877777664  444543332  3456789999986   34568899999999876 5578755321110    0


Q ss_pred             eeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCCC
Q psy12131        201 IYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA  243 (245)
Q Consensus       201 ~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~~  243 (245)
                      .....+.|.+|.+++.|.|+|.|.|.+|.|.+|..+.++|.+.
T Consensus       170 ~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p~  212 (215)
T 3mtr_A          170 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPV  212 (215)
T ss_dssp             HHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC-
T ss_pred             cccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEeccc
Confidence            0115789999999999999999999999999999999999875

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.95  E-value=2.2e-26  Score=171.31  Aligned_cols=226  Identities=13%  Similarity=0.171  Sum_probs=156.7

Q ss_pred             cceEEEeec--ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCC
Q psy12131          2 KEIELLYNR--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA   79 (245)
Q Consensus         2 ~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~   79 (245)
                      .|+.+..++  ..|.|.+++.+|+|.|+|.+.+..|...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+
T Consensus        49 ~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~  128 (291)
T 2wim_A           49 QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAP  128 (291)
T ss_dssp             TTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCC
T ss_pred             CcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCC
Confidence            355555544  569999999999999999999988875567888999888887777767778899999999999999999


Q ss_pred             eEEEEECCEEecc--CCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCcee--EEEEEEEecCCCCcccc----Ccc
Q psy12131         80 KVEWFRDGTAITL--GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS--QQFIQLSGIPNIPVFQK----SSR  151 (245)
Q Consensus        80 ~~~w~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~--~~~~~~~~~~~~p~~~~----~~~  151 (245)
                      .+.|++++..+..  ..++.+..   ...|.|.++...|.|.|+|.+.|..+..  ...+.+.+...|.....    ...
T Consensus       129 ~v~W~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~  205 (291)
T 2wim_A          129 AVSWLYHNEEVTTISDNRFAMLA---NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNAT  205 (291)
T ss_dssp             EEEEECC----CBCCCSSEEECT---TSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECC
T ss_pred             EEEEEECCccccccCCceEEEcc---CCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccce
Confidence            9999999877654  23333322   3479999999999999999999987432  23344443322222111    123


Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      ...++.+.|.|.+.+.++. . ..|+++..  .......  .....        ..+.|.++...+.+.|+|.|.|.+|.
T Consensus       206 ~~~g~~~~l~C~~~g~p~p-~-v~W~~~g~~~~~~~~~~--~~~~~--------~~L~i~~~~~~d~G~Y~C~a~N~~G~  273 (291)
T 2wim_A          206 AERGEEMTFSCRASGSPEP-A-ISWFRNGKLIEENEKYI--LKGSN--------TELTVRNIINSDGGPYVCRATNKAGE  273 (291)
T ss_dssp             SSSCCEEEEECBCCCBSCC-E-EEEEETTEECCCTTTEE--ECSTT--------CEEEEESCCSTTCEEEEEEEEETTEE
T ss_pred             ecCCCeEEEEEEeecCCCC-e-EEEEECCEECcCCccEE--EcCCc--------cEEEEeeCCcccCEEEEEEEEECCCc
Confidence            4678899999999766443 2 33555433  1111111  11111        56888899888999999999999999


Q ss_pred             CCCCcceEEecCC
Q psy12131        230 SRPSKAYVFATEG  242 (245)
Q Consensus       230 ~~~s~~~~~~t~~  242 (245)
                      ...+..+.+...+
T Consensus       274 ~~~~~~l~v~~~~  286 (291)
T 2wim_A          274 DEKQAFLQVFVQH  286 (291)
T ss_dssp             EEEEEEEEC----
T ss_pred             eeeeEEEEEEEec
Confidence            8888877776654

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.95  E-value=6.2e-26  Score=168.84  Aligned_cols=216  Identities=19%  Similarity=0.237  Sum_probs=154.6

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTA   89 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~   89 (245)
                      ...|.|.+++.+|+|.|+|.+.+..|...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..
T Consensus        61 ~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~  140 (291)
T 1qz1_A           61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRD  140 (291)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSC
T ss_pred             eEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEE
Confidence            46799999999999999999999887656788999999999988888778889999999999999999999999999877


Q ss_pred             eccCC--cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCce--eEEEEEEEecCCCCcccc-----CccccCCCeeEE
Q psy12131         90 ITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS--SQQFIQLSGIPNIPVFQK-----SSRRLGPDGYRL  160 (245)
Q Consensus        90 ~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~--~~~~~~~~~~~~~p~~~~-----~~~~~~~~~~~l  160 (245)
                      +....  ++...   ....|.|.++...|.|.|+|.+.|..+.  ....+.+.+.. +|.+..     ......+..+.|
T Consensus       141 ~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~~~g~~v~l  216 (291)
T 1qz1_A          141 VILKKDVRFIVL---SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV-PPTVQARQSIVNATANLGQSVTL  216 (291)
T ss_dssp             SSTTCCTTEEEC---TTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEE-EEEEEESCSEEEEETTSCCCEEE
T ss_pred             cccCCCceEEEc---cCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEec-CCcccccccccccccccCceEEE
Confidence            65432  33322   2347999999999999999999987533  22344444332 222211     123467889999


Q ss_pred             EEEeCCCCCceEEEEEEEeec--CCCC--eEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcce
Q psy12131        161 VWQVDTYSGIIQYLLKFRERE--ELTP--WRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAY  236 (245)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~  236 (245)
                      .|.+.+.++. . ..|+++..  ....  ..........        ..+.|.++...+.+.|+|.|.|..|....+..+
T Consensus       217 ~C~~~g~p~p-~-i~W~~~g~~~~~~~~~~~~~~~~~~~--------~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l  286 (291)
T 1qz1_A          217 VCDADGFPEP-T-MSWTKDGEPIENEEEDDEKHIFSDDS--------SELTIRNVDKNDEAEYVCIAENKAGEQDASIHL  286 (291)
T ss_dssp             EEEEEEESCC-E-EEEEETTEECCCC--CCSSEEECTTS--------CEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEeCCC-c-EEEEECCEECcCCCCCCcceEEcCCC--------cEEEEEecChhcCEEEEEEEEeCCCceEEEEEE
Confidence            9999765443 2 23444433  1110  0011111111        568899999999999999999999987665555


Q ss_pred             EEe
Q psy12131        237 VFA  239 (245)
Q Consensus       237 ~~~  239 (245)
                      .|.
T Consensus       287 ~V~  289 (291)
T 1qz1_A          287 KVF  289 (291)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.94  E-value=4.5e-27  Score=177.01  Aligned_cols=228  Identities=16%  Similarity=0.154  Sum_probs=160.2

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEee-------
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA-------   75 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-------   75 (245)
                      ++.+..+...|.|.+++.+|+|.|+|.+.|..|. ....+.|.|..+|.+...+....+..|..+.|.|.+.+       
T Consensus        53 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~-~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~  131 (317)
T 2y25_A           53 KHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFV  131 (317)
T ss_dssp             C-----CCEEEEETTCCSTTCSCEEEEEESSSCE-EEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEB
T ss_pred             cEEEECCeEEEEEccCCcccCeEEEEEEECCCCc-EEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEe
Confidence            4455555678999999999999999999998876 55666666655554433333344567777777777766       


Q ss_pred             ---cCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecC-----------
Q psy12131         76 ---NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIP-----------  141 (245)
Q Consensus        76 ---~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~-----------  141 (245)
                         .|.+.+.|++++..+....++.+...+....|.|.++..+|.|.|+|.+.|..|.....+.+.+..           
T Consensus       132 ~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~  211 (317)
T 2y25_A          132 TYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRL  211 (317)
T ss_dssp             SSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHH
T ss_pred             ccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhccc
Confidence               688899999999988877777777777778899999999999999999999999888877776421           


Q ss_pred             --------CCCcccc----CccccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEE
Q psy12131        142 --------NIPVFQK----SSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYN  207 (245)
Q Consensus       142 --------~~p~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (245)
                              .+|.+..    ......+..+.|.|.+.+.++..  ..|+++..  .......+.....       ....+.
T Consensus       212 ~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~--i~W~~~g~~~~~~~~~~~~~~~~-------~~~~L~  282 (317)
T 2y25_A          212 KQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE--VSWLKNEKALASDDHCNLKFEAG-------RTAYFT  282 (317)
T ss_dssp             HHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCE--EEEEESSSEECCCSSEEECCBTT-------TEEEEE
T ss_pred             CCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCE--EEEEECCEeCCCCCcEEEEEcCC-------CEEEEE
Confidence                    1122111    12356788999999997765442  33555543  1122122221111       125789


Q ss_pred             ecCCCCCceEEEEEEEEecCCCCCCCcceEEec
Q psy12131        208 ITGLQLFTQYEASVLAKNRFGWSRPSKAYVFAT  240 (245)
Q Consensus       208 i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t  240 (245)
                      |.++...+.+.|+|.|.|..|....+..+.+..
T Consensus       283 i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  315 (317)
T 2y25_A          283 INGVSTADSGKYGLVVKNKYGSETSDFTVSVFI  315 (317)
T ss_dssp             EBSCCSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence            999999999999999999999887666666653

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.94  E-value=1.3e-25  Score=168.26  Aligned_cols=214  Identities=16%  Similarity=0.263  Sum_probs=150.8

Q ss_pred             ceEEEeccCC-CCCEEEEEEEEcCCCCceeeEEEEEEecC-------CeEEeecceEEecCCCeEEEEEEEeecCCCeEE
Q psy12131         11 ESLDLDRVTL-KLAGLYQCIASNNIGESTSKNFIVNVIYP-------PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE   82 (245)
Q Consensus        11 ~~L~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~   82 (245)
                      ..|.|.+++. +|+|.|+|.|.|..|. .+..+.|.|..+       |.+...+....+..|+.+.|.|.+.|.|.+.+.
T Consensus        63 ~~L~i~~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~  141 (304)
T 2yd9_A           63 AVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEIT  141 (304)
T ss_dssp             EEEEECSCCTTTTCSEEEEEEECSSCE-ECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEE
T ss_pred             eEEEEecccccCCCeEEEEEEECCCCe-EEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEE
Confidence            5699999998 9999999999998887 677888888865       667777777778899999999999999999999


Q ss_pred             EEECCEEeccCC---cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeE---EEEEEEecCCCCccccC---cccc
Q psy12131         83 WFRDGTAITLGG---RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ---QFIQLSGIPNIPVFQKS---SRRL  153 (245)
Q Consensus        83 w~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~---~~~~~~~~~~~p~~~~~---~~~~  153 (245)
                      |++++..+....   ++...   ....|.|.++...|.|.|+|.+.|..|...   ..+.+.+...+|.+...   ....
T Consensus       142 W~k~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~  218 (304)
T 2yd9_A          142 WFKDFLPVDPSASNGRIKQL---RSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIM  218 (304)
T ss_dssp             EEETTEECCGGGGTTSEEEC---TTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCC
T ss_pred             EEECCEECcCCCCcceEEeC---CCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEc
Confidence            999998876432   22221   234899999999999999999999988755   45555554445544322   2356


Q ss_pred             CCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12131        154 GPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS  233 (245)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s  233 (245)
                      .++.+.|.|.+.+.++. .+ .|+++..      .+  .....  .......+.+.++.+.  +.|+|.|.|..|....+
T Consensus       219 ~G~~v~l~C~~~g~p~p-~v-~W~~~~~------~l--~~~~~--~~~~~~~L~i~~~~d~--G~Y~C~a~N~~G~~~~~  284 (304)
T 2yd9_A          219 PGGNVNITCVAVGSPMP-YV-KWMQGAE------DL--TPEDD--MPVGRNVLELTDVKDS--ANYTCVAMSSLGVIEAV  284 (304)
T ss_dssp             TTCCEEEEEEEEEESCC-EE-EEEETTE------EC--SCSSS--CCBSEEEEEECSCCSC--EEEEEEEEETTEEEEEE
T ss_pred             CCCeEEEEEEEeeeCCC-EE-EEEECCE------EC--CCccc--ccCCcEEEEEcccccC--EEEEEEEEeCCCcEEEE
Confidence            78899999999765443 22 3555432      00  00000  0111256777777654  55666699999988776


Q ss_pred             cceEEecCC
Q psy12131        234 KAYVFATEG  242 (245)
Q Consensus       234 ~~~~~~t~~  242 (245)
                      ..+.+...+
T Consensus       285 ~~l~V~~~~  293 (304)
T 2yd9_A          285 AQITVKSLP  293 (304)
T ss_dssp             EEEC-----
T ss_pred             EEEEEecCc
Confidence            666665443

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.94  E-value=2.5e-25  Score=167.11  Aligned_cols=225  Identities=15%  Similarity=0.197  Sum_probs=156.9

Q ss_pred             cceEEEeec--ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec------------CCeEEeecc-eEEecCCCe
Q psy12131          2 KEIELLYNR--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY------------PPEVSVEKQ-WIHTAPDMR   66 (245)
Q Consensus         2 ~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~------------~p~~~~~~~-~~~~~~g~~   66 (245)
                      .|+.+...+  ..|.|.+++.+|+|.|+|.+.|..|..  ..+.|.|..            +|.+...+. ...+.+|+.
T Consensus        47 ~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~--~s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~  124 (312)
T 2y23_A           47 PRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIA--SSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQ  124 (312)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCC--EEEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSC
T ss_pred             CCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcE--EEEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCC
Confidence            466666644  679999999999999999999988753  355566653            666655443 677889999


Q ss_pred             EEEEEEEe-ecCCCeEEEEECCEEeccCCcEEEEec--CceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe----
Q psy12131         67 AEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVS--SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG----  139 (245)
Q Consensus        67 ~~l~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~----  139 (245)
                      +.|.|.+. +.|.+.+.|++++..+....++.+...  .....|.|.++..+|.|.|+|.+.+..+.....+.+..    
T Consensus       125 v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~  204 (312)
T 2y23_A          125 VRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFK  204 (312)
T ss_dssp             EEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHH
T ss_pred             EEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhh
Confidence            99999998 889999999999999887776665543  44567999999999999999999886655555444421    


Q ss_pred             --------------cCCCCccccC--ccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceee
Q psy12131        140 --------------IPNIPVFQKS--SRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYT  203 (245)
Q Consensus       140 --------------~~~~p~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (245)
                                    ...+|.+...  .....++.+.|.|.+.+.++...+ .|+++..    .  +.........  ...
T Consensus       205 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v-~W~~~g~----~--~~~~~~~~~~--~~~  275 (312)
T 2y23_A          205 KLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHI-VWYKDER----E--ISVDEKHDFK--DGI  275 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEEESCCSSCEE-EEEETTE----E--EEEECCC------CE
T ss_pred             hhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEEcCCCCCCEE-EEeeCCE----E--CCCCCcEEEE--CCE
Confidence                          0112322111  235678999999999776544233 3554432    0  0000000000  112


Q ss_pred             eEEEecCCCCCceEEEEEEEEecCCCCCCCcceE
Q psy12131        204 QSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYV  237 (245)
Q Consensus       204 ~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~  237 (245)
                      ..+.|.++...+.+.|+|.|.|.+|....+..+.
T Consensus       276 ~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  309 (312)
T 2y23_A          276 CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLV  309 (312)
T ss_dssp             EEEEECSCSGGGCEEEEEEEESTTCCEEEEEEEC
T ss_pred             EEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEE
Confidence            6789999999999999999999999876554443

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.93  E-value=1.4e-24  Score=163.21  Aligned_cols=219  Identities=15%  Similarity=0.165  Sum_probs=150.5

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEe-ecCCCeEEEEECCE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVY-ANPPAKVEWFRDGT   88 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~w~~~~~   88 (245)
                      ..+|.|.+++.+|+|.|+|.+.+..+...+..+.|.+..+|.+........+..+..+.+.|.+. +.|.+.+.|++++.
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~  157 (313)
T 4fqp_A           78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLG  157 (313)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTC
T ss_pred             ceEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCc
Confidence            35699999999999999999976544436777888888889887776666677888899999875 77889999999887


Q ss_pred             EeccCCcEEEEecCc---eeEEEEccCCCCCCeEEEEEEEeCCceeEEE--EEEEecCCCCccc----cCccccCCCeeE
Q psy12131         89 AITLGGRIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGSSQQF--IQLSGIPNIPVFQ----KSSRRLGPDGYR  159 (245)
Q Consensus        89 ~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~--~~~~~~~~~p~~~----~~~~~~~~~~~~  159 (245)
                      .+...........+.   .+.|.|......|.|.|+|.+.|..+.....  +.+.+. .+|.+.    .......++.+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~-~~P~v~~~~~~~~~~~~g~~v~  236 (313)
T 4fqp_A          158 GMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY-YPPEVSISGYDNNWYLGQNEAT  236 (313)
T ss_dssp             CEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBC-EEEEEEEECCCSCEETTCCCEE
T ss_pred             cccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccc-cCCccccccccceeecCCCeEE
Confidence            665332221111111   2468888888899999999999987654443  333332 233321    112235678899


Q ss_pred             EEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEe
Q psy12131        160 LVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~  239 (245)
                      |.|.+.++++...+. |+++.+.-.... .           .....|.|.++...+.+.|+|.|.|.+|....+..+.|.
T Consensus       237 l~C~~~g~P~p~~v~-W~~~~~~l~~~~-~-----------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  303 (313)
T 4fqp_A          237 LTCDARSNPEPTGYN-WSTTMGPLPPFA-V-----------AQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVK  303 (313)
T ss_dssp             EEEEEEEESCCCEEE-EEETTBSCCTTE-E-----------EETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEEEecCCCCCcEEE-EEECCEECCCce-E-----------EeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            999997765443333 555543110100 0           111468899999999999999999999987776667666


Q ss_pred             cCC
Q psy12131        240 TEG  242 (245)
Q Consensus       240 t~~  242 (245)
                      ..|
T Consensus       304 ~~P  306 (313)
T 4fqp_A          304 EGP  306 (313)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            544

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.93  E-value=2e-24  Score=167.83  Aligned_cols=214  Identities=18%  Similarity=0.257  Sum_probs=155.8

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeE------EeecceEEecCCCeEEEEEEEeecCCCeEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV------SVEKQWIHTAPDMRAEIICNVYANPPAKVEW   83 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~------~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w   83 (245)
                      ...|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|.+      ...+....+.+|+.+.|.|.+.+.|.+.+.|
T Consensus       176 ~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W  255 (403)
T 3laf_A          176 SGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTW  255 (403)
T ss_dssp             TSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEE
T ss_pred             CceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEE
Confidence            4569999999999999999999987765556778888766543      3344556678999999999999999999999


Q ss_pred             EECCEEeccCC-cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCcccc---CccccCCCeeE
Q psy12131         84 FRDGTAITLGG-RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQK---SSRRLGPDGYR  159 (245)
Q Consensus        84 ~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~  159 (245)
                      ++++..+.... .+...   ....|.|.++..+|.|.|+|.+.|..|.....+.+.+... |.+..   ......+..+.
T Consensus       256 ~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~-p~~~~~~~~~~~~~g~~v~  331 (403)
T 3laf_A          256 LRGEEVIQLRSKKYSLL---GGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVP-PWFLNHPSNLYAYESMDIE  331 (403)
T ss_dssp             EETTEECCCSSSSEEEE---TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEE-EEEEECCCCEECCTTCCEE
T ss_pred             EECCeeccCCCceEEEC---CccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECC-CcEeecCcceEEecCCeEE
Confidence            99998876543 33222   2347999999999999999999999998877777666432 22211   12346788999


Q ss_pred             EEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceE
Q psy12131        160 LVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYV  237 (245)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~  237 (245)
                      |.|.+.+.++. .+ .|+++..  .......+.  .         ...+.|..+...+.+.|+|.|.|..|....+..+.
T Consensus       332 l~C~~~g~p~p-~v-~W~~~g~~~~~~~~~~~~--~---------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~  398 (403)
T 3laf_A          332 FECAVSGKPVP-TV-NWMKNGDVVIPSDYFQIV--G---------GSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLI  398 (403)
T ss_dssp             ECCEEEEESCC-EE-EEEETTEECCCSSSEEEE--T---------TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEeeccCC-EE-EEEECCEECCCCCcEEEe--c---------CccEEEeccccccCEEEEEEEEcCCceEEEEEEEE
Confidence            99999765443 22 3444432  111111111  1         14688999999999999999999999887776666


Q ss_pred             Eec
Q psy12131        238 FAT  240 (245)
Q Consensus       238 ~~t  240 (245)
                      +..
T Consensus       399 V~~  401 (403)
T 3laf_A          399 VPK  401 (403)
T ss_dssp             CCC
T ss_pred             EeC
Confidence            654

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.93  E-value=1.3e-24  Score=167.90  Aligned_cols=214  Identities=17%  Similarity=0.200  Sum_probs=145.8

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCCce--eeEEEEEEe-------cCCeEEe-ecceEEecCCCeEEEEEEEeecC
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGEST--SKNFIVNVI-------YPPEVSV-EKQWIHTAPDMRAEIICNVYANP   77 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~~l~v~-------~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~   77 (245)
                      .....|.|.+++.+|+|.|+|.|.|..+...  .....+.+.       .+|.+.. .+....+.+|+.+.|.|.+.|.|
T Consensus       154 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P  233 (384)
T 3kld_A          154 QETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNP  233 (384)
T ss_dssp             TTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEES
T ss_pred             cCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecC
Confidence            3445699999999999999999999876521  112222222       2344333 24456678999999999999999


Q ss_pred             CCeEEEEEC-CEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCcc--ccCccccC
Q psy12131         78 PAKVEWFRD-GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVF--QKSSRRLG  154 (245)
Q Consensus        78 ~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~--~~~~~~~~  154 (245)
                      .|.+.|+++ +..+.....  .  ......|.|.++..+|.|.|+|.|.|..|.......+.+...|...  ........
T Consensus       234 ~p~i~W~k~~~~~~~~~~~--~--~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~  309 (384)
T 3kld_A          234 VPTILWRRADGKPIARKAR--R--HKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAM  309 (384)
T ss_dssp             CCEEEEEETTCCCCCTTCE--E--CTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECT
T ss_pred             CCcEEEEeCCCccccccce--e--cCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEecC
Confidence            999999984 444443221  1  1234579999999999999999999999987776666654322211  11233467


Q ss_pred             CCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12131        155 PDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP  232 (245)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~  232 (245)
                      +..+.|.|.+.+.++. .+ .|+++..  .......+            ....+.|..+...+.+.|+|.|.|.+|....
T Consensus       310 g~~v~l~C~~~g~P~p-~i-~W~k~g~~l~~~~~~~~------------~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~  375 (384)
T 3kld_A          310 EESVFWECKANGRPKP-TY-RWLKNGDPLLTRDRIQI------------EQGTLNITIVNLSDAGMYQCVAENKHGVIFS  375 (384)
T ss_dssp             TCCEEEECEEEEESCC-EE-EEEETTEECCCBTTEEE------------ETTEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCCEEEEeECCccCCC-eE-EEEECCEECCCCccEEE------------eCCEEEEeecChhhCEEEEEEEEeCCceEEe
Confidence            8899999999766433 22 2454433  11111111            1136888899999999999999999998877


Q ss_pred             CcceEEe
Q psy12131        233 SKAYVFA  239 (245)
Q Consensus       233 s~~~~~~  239 (245)
                      +..+.|.
T Consensus       376 ~a~L~V~  382 (384)
T 3kld_A          376 SAELSVI  382 (384)
T ss_dssp             EEEEEEC
T ss_pred             ceEEEEe
Confidence            7766654

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.93  E-value=3.7e-24  Score=159.23  Aligned_cols=220  Identities=14%  Similarity=0.142  Sum_probs=152.2

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCC-CeEEEE-EC
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP-AKVEWF-RD   86 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~w~-~~   86 (245)
                      .++.|.|.+++.+|+|.|+|.+.|  |.  +..+.|.|..+|.+...+....+.+|+.+.|.|.+.+ |. +.+.|+ ++
T Consensus        55 ~~~~L~i~~~~~~d~G~Y~C~~~n--g~--~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~  129 (290)
T 2o26_X           55 KKNEWIQEKAEATRTGTYTCSNSN--GL--TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECD  129 (290)
T ss_dssp             CSSEEEETTCCGGGCEEEEEEESS--SC--EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETT
T ss_pred             CCceEEEeccCHHhCeEEEEEeeC--Cc--cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCC
Confidence            347899999999999999999999  43  7788899988887766666677889999999999985 77 899995 68


Q ss_pred             CEEeccCCcEEEEecCceeEEEEccCCCCCCe-EEEEEEEeCCceeEE-EEEEEec---CCCCccccC---ccccCCCee
Q psy12131         87 GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG-NYMCQASNNLGSSQQ-FIQLSGI---PNIPVFQKS---SRRLGPDGY  158 (245)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~g~~~~-~~~~~~~---~~~p~~~~~---~~~~~~~~~  158 (245)
                      +..+....++.....   ..|.|.++..+|.| .|+|.+.|..+.... .+.+.+.   ..+|.+...   .....++.+
T Consensus       130 g~~l~~~~~~~~~~~---~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v  206 (290)
T 2o26_X          130 GKSLPTDLTFVPNPK---AGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTF  206 (290)
T ss_dssp             SCCCCTTCEEEEETT---TEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCE
T ss_pred             CcCCCCCCceeeCCC---CCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcE
Confidence            887776655554433   37999999999999 999999998665332 3444433   244544322   345778899


Q ss_pred             EEEEEeCCCCCceEEEEEEEeecCC---CCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcc
Q psy12131        159 RLVWQVDTYSGIIQYLLKFREREEL---TPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKA  235 (245)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~  235 (245)
                      .|.|.+.+.++...+. |+++....   ............  ........+.|.++...+.+.|+|.|.|..|....+..
T Consensus       207 ~l~C~~~g~p~p~~i~-W~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~  283 (290)
T 2o26_X          207 TVVCTIKDVSTSVNSM-WLKMNPQPQHIAQVKHNSWHRGD--FNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTT  283 (290)
T ss_dssp             EEEEEEEESSTTCEEE-EEEESSSEEECCCEECCEEEEET--TEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEEEEecCCcceeEE-EecCCCCCccceeecccccccCc--eeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEE
Confidence            9999997654432233 45553310   000000000000  01122367899999999999999999999998755555


Q ss_pred             eEEe
Q psy12131        236 YVFA  239 (245)
Q Consensus       236 ~~~~  239 (245)
                      +.+.
T Consensus       284 l~V~  287 (290)
T 2o26_X          284 LKVV  287 (290)
T ss_dssp             ECC-
T ss_pred             EEEE
Confidence            5544

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.93  E-value=1e-25  Score=170.85  Aligned_cols=230  Identities=18%  Similarity=0.276  Sum_probs=124.5

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCe----------------------EEee----cceEEecC
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE----------------------VSVE----KQWIHTAP   63 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~----------------------~~~~----~~~~~~~~   63 (245)
                      +..|.|.+++.+|+|.|+|.+.|. |. .+..+.|.|..+|.                      +..+    .....+..
T Consensus        60 ~~~L~i~~v~~~D~G~Y~C~a~n~-~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~  137 (334)
T 1ry7_B           60 PQRLQVLNASHEDSGAYSCRQRLT-QR-VLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPA  137 (334)
T ss_dssp             -------------------------------------------------------------CCCCSCCTTCCCCEEEEET
T ss_pred             cceEEEeecccccCEEEEEEEEeC-Ce-EEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecC
Confidence            456999999999999999999998 55 56777777775432                      2211    12356778


Q ss_pred             CCeEEEEEEEeecCCCeEEEEECCEEeccCCcE-EEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCC
Q psy12131         64 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRI-DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPN  142 (245)
Q Consensus        64 g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~  142 (245)
                      |+.+.|.|.+.|.|.+.+.|++++..+....+. ..........|.|.++...|.|.|+|.+.|..|.....+.+.+...
T Consensus       138 g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  217 (334)
T 1ry7_B          138 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLER  217 (334)
T ss_dssp             TCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCcEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecC
Confidence            999999999999999999999999877654322 1112234458999999999999999999999998877777766432


Q ss_pred             ---CCccc----cCccccCCCeeEEEEEeCCCCCceEEEEEEEe----ec--C-CCC-eEEEeeCCCCCCCcceeeeEEE
Q psy12131        143 ---IPVFQ----KSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRE----RE--E-LTP-WRNIVIPSDGSLAGPIYTQSYN  207 (245)
Q Consensus       143 ---~p~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~--~-~~~-~~~~~~~~~~~~~~~~~~~~~~  207 (245)
                         +|.+.    .......++.+.|.|.+.+.++. .+ .|++.    ..  . ... ...+ ...............+.
T Consensus       218 ~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p-~v-~W~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~  294 (334)
T 1ry7_B          218 SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP-HI-QWLKHVEVNGSKVGPDGTPYVTV-LKTAGANTTDKELEVLS  294 (334)
T ss_dssp             CCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCE-EE-EEEECCCGGGCSBCTTSSBCCCC-CCCSSCSCSCTTCCCEE
T ss_pred             CCCCCceEecCCCceEEeCCCCEEEEEEEecCCCC-eE-EEEECCcCCCccccCCCCeeEEE-eecCccccccccccEEE
Confidence               23332    12334678899999999766543 23 35552    11  0 000 0000 00000000001113688


Q ss_pred             ecCCCCCceEEEEEEEEecCCCCCCCcceEEecCCCC
Q psy12131        208 ITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGAE  244 (245)
Q Consensus       208 i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~~~  244 (245)
                      |.++...+.+.|+|.|.|..|....+..+.+...+++
T Consensus       295 i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~  331 (334)
T 1ry7_B          295 LHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEE  331 (334)
T ss_dssp             ECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCCC
T ss_pred             EccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCCC
Confidence            9899888888888899999999888888888776654

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.93  E-value=5.4e-24  Score=158.20  Aligned_cols=224  Identities=15%  Similarity=0.125  Sum_probs=153.5

Q ss_pred             EeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCe-EEeecceEEecCCCeEEEEEEEeecCCCe-EEEE
Q psy12131          7 LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE-VSVEKQWIHTAPDMRAEIICNVYANPPAK-VEWF   84 (245)
Q Consensus         7 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~w~   84 (245)
                      ..++..|.|.+++.+|+|.|+|.+.+..+. .+..+.|.|..+|. +...+....+.+|+.+.|.|.+.+.+.+. +.|+
T Consensus        47 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~  125 (289)
T 3ejj_X           47 ESPGSTLTTRNATFKNTGTYRCTELEDPMA-GSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLM  125 (289)
T ss_dssp             CSSCCEEEESSCCGGGCEEEEEECCC------CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEE
T ss_pred             cCCccEEEEeeeccccCEEEEEEEeccCCc-ceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEE
Confidence            345677999999999999999999988777 68888999998776 45556677888999999999999877665 9998


Q ss_pred             E-CCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEE-eCCceeEEEEEEEecC---CCCccccC---ccccCCC
Q psy12131         85 R-DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS-NNLGSSQQFIQLSGIP---NIPVFQKS---SRRLGPD  156 (245)
Q Consensus        85 ~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~-n~~g~~~~~~~~~~~~---~~p~~~~~---~~~~~~~  156 (245)
                      + ++..+....++.+...   ..|.|.++..+|.|.|+|.+. +..+.....+.+.+..   .+|.+...   .....+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~  202 (289)
T 3ejj_X          126 REGGRQVLRKTVYFFSPW---RGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGE  202 (289)
T ss_dssp             EGGGEECCTTCCEEEETT---TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSS
T ss_pred             ecCCeecCCCccEEECCC---CCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCC
Confidence            6 6777766666655433   369999999999999999999 4445555555555542   34443322   2235788


Q ss_pred             eeEEEEEeCCCCCceEEEEEEEeec-CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcc
Q psy12131        157 GYRLVWQVDTYSGIIQYLLKFRERE-ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKA  235 (245)
Q Consensus       157 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~  235 (245)
                      .+.|.|.+.+..|...+. |+++.. ......... ..    ........+.|.++...+.+.|+|.|.|..|....+..
T Consensus       203 ~~~l~C~~~~~~p~~~i~-W~~~~~~~~~~~~~~~-~~----~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~  276 (289)
T 3ejj_X          203 AAQIVCSATNAEVGFNVI-LKRGDTKLEIPLNSDF-QD----NYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMN  276 (289)
T ss_dssp             CEEEEEEEEESSSCCEEE-EEETTEECCCCEEEEE-CS----SSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEE
T ss_pred             cEEEEEEeCCCCCceEEE-EEECCEEeeccCCccc-cc----ceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEE
Confidence            999999996532332332 444432 111111100 00    11122367899999999999999999999998877766


Q ss_pred             eEEec
Q psy12131        236 YVFAT  240 (245)
Q Consensus       236 ~~~~t  240 (245)
                      +.+.-
T Consensus       277 L~~~~  281 (289)
T 3ejj_X          277 FQVVE  281 (289)
T ss_dssp             EECC-
T ss_pred             EEEEe
Confidence            65543

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.93  E-value=2.9e-23  Score=170.42  Aligned_cols=217  Identities=18%  Similarity=0.317  Sum_probs=155.6

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeE-EeecceEEecCCCeEEEEEEEeecCCCe
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV-SVEKQWIHTAPDMRAEIICNVYANPPAK   80 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~   80 (245)
                      .|+.+..++..|.|.+++.+|+|.|+|.|.|..|...+..+.|.|..+|.. ...+....+..|+.+.|.|.+.|.|.+.
T Consensus       333 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~  412 (642)
T 1e07_A          333 PRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQ  412 (642)
T ss_pred             CCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCe
Confidence            456666667789999999999999999999998875667788999876654 3345556778999999999999999999


Q ss_pred             EEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEE--EEEEec--CCCCccccC--ccccC
Q psy12131         81 VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF--IQLSGI--PNIPVFQKS--SRRLG  154 (245)
Q Consensus        81 ~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~--~~~~~~--~~~p~~~~~--~~~~~  154 (245)
                      +.|++++..+...           ..|.|.++...|.|.|+|.|.|..|.....  +.+.+.  +.+|.+...  .....
T Consensus       413 i~W~~~g~~~~~~-----------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~  481 (642)
T 1e07_A          413 YSWLIDGNIQQHT-----------QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVED  481 (642)
T ss_pred             EEEEECCEEcCCC-----------ceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecC
Confidence            9999999876532           358999999999999999999998765432  344433  334443322  23457


Q ss_pred             CCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12131        155 PDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP  232 (245)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~  232 (245)
                      ++.+.|.|.+.+..+  .+. |+++..  ....  .+......        ..+.|.++...+.+.|+|.|.|..|....
T Consensus       482 g~~v~l~C~~~~~~~--~i~-W~~~g~~l~~~~--~~~~~~~~--------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s  548 (642)
T 1e07_A          482 KDAVAFTCEPEAQNT--TYL-WWVNGQSLPVSP--RLQLSNGN--------RTLTLFNVTRNDARAYVCGIQNSVSANRS  548 (642)
T ss_pred             CCeEEEEEECCCCCc--EEE-EEECCEeCCCCC--cEEEcCCC--------cEEEEeecChhcCceEEEEeEcCCCCccC
Confidence            889999999974322  332 444433  1111  11111111        46888899988889999999999997543


Q ss_pred             -CcceEEecCC
Q psy12131        233 -SKAYVFATEG  242 (245)
Q Consensus       233 -s~~~~~~t~~  242 (245)
                       +..+.+...|
T Consensus       549 ~~~~l~V~~~p  559 (642)
T 1e07_A          549 DPVTLDVLYGP  559 (642)
T ss_pred             CCEEEEEEeCC
Confidence             4456555433

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.93  E-value=3.9e-24  Score=171.62  Aligned_cols=234  Identities=14%  Similarity=0.105  Sum_probs=160.5

Q ss_pred             ceEEEeecceEEEeccCCCCCE-EEEEEEEcCCCCceeeEEEEEEe----cCCeEEeecceEEecCCCeEEEEEEEeecC
Q psy12131          3 EIELLYNRESLDLDRVTLKLAG-LYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVYANP   77 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~   77 (245)
                      ++.+.. ...|.|.+++.+|+| .|+|.|.|..+...+..+.|.|.    .+|.+...+....+.+|+.+.|.|.+.+.|
T Consensus       161 ~~~~~~-~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p  239 (524)
T 2ec8_A          161 RFIPDP-KAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVS  239 (524)
T ss_dssp             EEEEET-TTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESS
T ss_pred             ceeECC-CccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCC
Confidence            344443 446999999999999 99999999876645667888886    688888877777889999999999999998


Q ss_pred             CCe-EEEEECCEEe--ccCCcEEEE---ecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCcccc---
Q psy12131         78 PAK-VEWFRDGTAI--TLGGRIDMH---VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQK---  148 (245)
Q Consensus        78 ~~~-~~w~~~~~~~--~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~---  148 (245)
                      .+. +.|++++..+  .......+.   .......|.|.++..+|.|.|+|.+.|..|.....+.|.+...|.....   
T Consensus       240 ~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~  319 (524)
T 2ec8_A          240 SSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMI  319 (524)
T ss_dssp             TTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESS
T ss_pred             CcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCC
Confidence            886 9999998763  222222221   1123568999999999999999999999998888777777643322211   


Q ss_pred             --CccccCCCeeEEEEEeCCCCCceEEEEEEEeec-CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEe
Q psy12131        149 --SSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE-ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKN  225 (245)
Q Consensus       149 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N  225 (245)
                        ......++.+.|.|.+.+.++...+ .|+++.. ....-.........  ........+.|.++...+.+.|+|.|.|
T Consensus       320 ~~~~~v~~G~~v~l~C~~~g~P~p~~v-~W~k~g~~~~~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  396 (524)
T 2ec8_A          320 NTTVFVNDGENVDLIVEYEAFPKPEHQ-QWIYMNRTFTDKWEDYPKSENE--SNIRYVSELHLTRLKGTEGGTYTFLVSN  396 (524)
T ss_dssp             CSEEEECTTCCEEEEEEEEEESCCCEE-EEESSSCBCSSSBCCEESCCSS--SCCEEEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CceEEEcCCCcEEEEEEEeecCCCcEE-EEEECCeeccCCccceeEEccC--CCceeEEEEEEeecCcccCeEEEEEEEe
Confidence              2345778899999999666543322 3555443 11111011111110  0111346799999999999999999999


Q ss_pred             cCCCCCCCcceEEec
Q psy12131        226 RFGWSRPSKAYVFAT  240 (245)
Q Consensus       226 ~~G~~~~s~~~~~~t  240 (245)
                      ..|....+..+.+..
T Consensus       397 ~~g~~~~~~~l~V~~  411 (524)
T 2ec8_A          397 SDVNAAIAFNVYVNT  411 (524)
T ss_dssp             SSCEEEEEEEEEECE
T ss_pred             cCceEEEEEEEEEec
Confidence            999866655555543

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.92  E-value=5.4e-24  Score=170.82  Aligned_cols=228  Identities=12%  Similarity=0.074  Sum_probs=147.1

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecc---eEEecCCCeEEEEEEEeecCCCe-EEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ---WIHTAPDMRAEIICNVYANPPAK-VEWF   84 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~---~~~~~~g~~~~l~C~~~~~~~~~-~~w~   84 (245)
                      ..+.|.|.+++.+|+|.|+|.|.|..|. ....+.|.|..+|.+...+.   ...+.+|+.+.|.|.+.|.|.|. +.|+
T Consensus       271 ~~~~L~I~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~  349 (524)
T 2ec8_A          271 RQATLTISSARVNDSGVFMCYANNTFGS-ANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWI  349 (524)
T ss_dssp             EEEEEEESSCCTTTCEEEEEEEECSSCE-EEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEE
T ss_pred             eEEEEEECCCCHHHCEEEEEEEEecCCc-eEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEE
Confidence            3467999999999999999999998887 56789999999999877653   57788999999999999999998 9999


Q ss_pred             ECCEEeccCC-cEEEEecC----ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCccccCccccCCCeeE
Q psy12131         85 RDGTAITLGG-RIDMHVSS----EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYR  159 (245)
Q Consensus        85 ~~~~~~~~~~-~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  159 (245)
                      +++..+.... ++.....+    ....|.|.++..+|.|.|+|.|.|..|.....+.|.+.. +|.+........+   .
T Consensus       350 k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~-~P~i~~~~~~~~g---~  425 (524)
T 2ec8_A          350 YMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT-KPEILTYDRLVNG---M  425 (524)
T ss_dssp             SSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECE-EEEEEEEECCSSS---C
T ss_pred             ECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEec-CCeEeecccCcCc---E
Confidence            9998876554 33322222    346899999999999999999999999988888887753 4443333222333   8


Q ss_pred             EEEEeCCCCCceEEEEEEEeecCCCCe-EEEeeCCCC----CCCcceeeeE-EEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12131        160 LVWQVDTYSGIIQYLLKFREREELTPW-RNIVIPSDG----SLAGPIYTQS-YNITGLQLFTQYEASVLAKNRFGWSRPS  233 (245)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~-~~i~~l~~~~~y~~~v~a~N~~G~~~~s  233 (245)
                      |.|.+.+.++. .+ .|+++......- .........    .......... ..+......+.+.|+|.|.|.+|....+
T Consensus       426 l~C~~~g~P~p-~i-~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~  503 (524)
T 2ec8_A          426 LQCVAAGFPEP-TI-DWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAY  503 (524)
T ss_dssp             EEEEEEEESCC-EE-ECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECC
T ss_pred             EEEEEEeecCC-EE-EEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEE
Confidence            99999766544 22 244442200000 000000000    0000000111 1133322356667777799999998888


Q ss_pred             cceEEecCCC
Q psy12131        234 KAYVFATEGA  243 (245)
Q Consensus       234 ~~~~~~t~~~  243 (245)
                      ..+.|+..+.
T Consensus       504 ~~l~V~e~~~  513 (524)
T 2ec8_A          504 FNFAFKGNNK  513 (524)
T ss_dssp             CCCCC-----
T ss_pred             EEEEEecCCH
Confidence            8887776553

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.92  E-value=3.2e-23  Score=168.41  Aligned_cols=224  Identities=11%  Similarity=0.100  Sum_probs=156.7

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCce----eeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeE----EE
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGEST----SKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKV----EW   83 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~----~w   83 (245)
                      .|.|.+++.+|+|.|+|.|.|. |...    ...+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+    .|
T Consensus       291 ~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W  369 (585)
T 2ocw_A          291 SVVITGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLW  369 (585)
T ss_pred             EEEEccCChhhCEEEEEEEEcC-CCccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEE
Confidence            6999999999999999999995 4422    2788899999999887777788889999999999999999876    79


Q ss_pred             EE--CCE--Eecc---------CCcEEEEec--CceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCcccc
Q psy12131         84 FR--DGT--AITL---------GGRIDMHVS--SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQK  148 (245)
Q Consensus        84 ~~--~~~--~~~~---------~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~  148 (245)
                      ++  ++.  .+..         ..++.+...  .....|.|.++..+|.|.|+|.+ |..|.....+.|.+...+|.+..
T Consensus       370 ~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~  448 (585)
T 2ocw_A          370 EGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKV  448 (585)
T ss_pred             EccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCcccccc
Confidence            98  776  3322         234444322  22345999999999999999999 88888777777777655554432


Q ss_pred             --CccccCCCeeEEEEEeCCC--CCceEEEEEEEeecC--C----CCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEE
Q psy12131        149 --SSRRLGPDGYRLVWQVDTY--SGIIQYLLKFREREE--L----TPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE  218 (245)
Q Consensus       149 --~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  218 (245)
                        ......++.+.|.|.+.+.  +...-...|+++...  .    .....+...     ........|.|.++...+.+.
T Consensus       449 ~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~-----~~~~~~~~L~i~~v~~~d~G~  523 (585)
T 2ocw_A          449 PGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNC-----DENSRLVSLTLNLVTRADEGW  523 (585)
T ss_pred             CCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEe-----cCcccEEEEEECCCCcccCeE
Confidence              2345678899999999532  111123345554320  0    000000000     001122578999999999999


Q ss_pred             EEEEEEecCCCCCCC-cceEEecCC
Q psy12131        219 ASVLAKNRFGWSRPS-KAYVFATEG  242 (245)
Q Consensus       219 ~~v~a~N~~G~~~~s-~~~~~~t~~  242 (245)
                      |+|.|.|..|.+... ..+.|...+
T Consensus       524 Y~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          524 YWCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             EEEEeEeCCCccEEEEEEEEEEeee
Confidence            999999999987654 456666544

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.92  E-value=8e-24  Score=160.24  Aligned_cols=214  Identities=12%  Similarity=0.131  Sum_probs=147.3

Q ss_pred             cceEEEeccCCCCCEEEEEEEE-cCCCCceeeEEEEEEecCCeEEe--ecceEEecCC---CeEEEEEE-EeecCCCeEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIAS-NNIGESTSKNFIVNVIYPPEVSV--EKQWIHTAPD---MRAEIICN-VYANPPAKVE   82 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~~l~v~~~p~~~~--~~~~~~~~~g---~~~~l~C~-~~~~~~~~~~   82 (245)
                      ..+|.|.+++.+|+|.|+|.+. +..+. ....+.|.|..+|.+..  .+....+.+|   +.+.|.|. ..+.|.+.+.
T Consensus        91 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~  169 (331)
T 3u83_A           91 DGTIRLSRLELEDEGVYICEFATFPTGN-RESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVS  169 (331)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEE
T ss_pred             CceEEEcccCcccCcEEEEEEEecCCCc-cEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEE
Confidence            4569999999999999999855 44454 67889999999888744  3455667777   78999998 7889999999


Q ss_pred             EEECCEEec-------cCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCccccC---ccc
Q psy12131         83 WFRDGTAIT-------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKS---SRR  152 (245)
Q Consensus        83 w~~~~~~~~-------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~~---~~~  152 (245)
                      |++++....       ....+.+     .+.|.|..+...|.|.|+|.+.|..|.....+.+.+...|......   ...
T Consensus       170 W~~~~~~~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~  244 (331)
T 3u83_A          170 WETRLKGEAEYQEIRNPNGTVTV-----ISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWY  244 (331)
T ss_dssp             EEESSCCEEEEEEEECTTSCEEE-----EEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCB
T ss_pred             EEcCCCCccccceeECCCCcEEE-----EEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceE
Confidence            998532111       1111111     2468888889999999999999999887777766654322222111   224


Q ss_pred             cCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEec-CCCCCceEEEEEEEEecCCCCC
Q psy12131        153 LGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNIT-GLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      ..++.+.|.|.+.++++...+ .|+++...-......            ....+.|. .+...+.+.|+|.|.|..|...
T Consensus       245 ~~g~~~~l~C~~~g~p~p~~i-~W~~~~~~~~~~~~~------------~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~  311 (331)
T 3u83_A          245 LQRMDVKLTCKADANPPATEY-HWTTLNGSLPKGVEA------------QNRTLFFKGPINYSLAGTYICEATNPIGTRS  311 (331)
T ss_dssp             TTCCCEEEEEEEEEESCCCEE-EEEETTBSCCTTEEE------------ETTEEEECSCCCGGGCEEEEEEEEETTEEEE
T ss_pred             eCCCeEEEEEeCcCCCCCCEE-EEEECCCccccccee------------cCcEEEEeCCCccccCeEEEEEEEeccccce
Confidence            668899999999666544323 355543311110111            11467888 7888889999999999999876


Q ss_pred             CCcceEEecCC
Q psy12131        232 PSKAYVFATEG  242 (245)
Q Consensus       232 ~s~~~~~~t~~  242 (245)
                      .+..+.|...+
T Consensus       312 ~~~~l~V~~~~  322 (331)
T 3u83_A          312 GQVEVNITEAA  322 (331)
T ss_dssp             EEEEECCBC--
T ss_pred             EEEEEEEeccc
Confidence            66666665544

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.92  E-value=4.3e-23  Score=151.15  Aligned_cols=206  Identities=14%  Similarity=0.080  Sum_probs=146.0

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEE-eecCCCeEEEEECC
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV-YANPPAKVEWFRDG   87 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~w~~~~   87 (245)
                      .+..|.|.+++.+|+|.|+|.+.+..+   +..+.|.|..+|..... ....+.+|+.+.|.|.+ .+.|.+.+.|++++
T Consensus        46 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~---s~~~~l~v~~~~~~~~~-~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g  121 (262)
T 3rjd_A           46 STPSYRITSASVNDSGEYRCQRGLSGR---SDPIQLEIHRGWLLLQV-SSRVFTEGEPLALRCHAWKDKLVYNVLYYRNG  121 (262)
T ss_dssp             CSSEEEESSCCGGGCEEEEEEESSSCC---CCCEEEEEECSSEEEEE-SCSEEETTSCEEEEEEEGGGCCCEEEEEEETT
T ss_pred             cCCeEEEecCCcccCeEEEEEEecCCc---cccEEEEEeccceEecC-CCeEEecCCeEEEEEEccCCCCCceEEEEECC
Confidence            456799999999999999999987543   45677888777654433 34557789999999999 67788899999999


Q ss_pred             EEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecC--CCCccccC--ccccCCCeeEEEEE
Q psy12131         88 TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIP--NIPVFQKS--SRRLGPDGYRLVWQ  163 (245)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~--~~p~~~~~--~~~~~~~~~~l~~~  163 (245)
                      ..+....        ....|.|.++...|.|.|+|.+.|..+.....+.+.+..  .+|.+...  .....++.+.|.|.
T Consensus       122 ~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~  193 (262)
T 3rjd_A          122 KAFKFFH--------WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCE  193 (262)
T ss_dssp             EEEEEEE--------ECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEE
T ss_pred             ccccccC--------CCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeE
Confidence            8764321        234799999999999999999999988777766665543  34443322  23567899999999


Q ss_pred             eCCCC--CceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC-CCCcceEEe
Q psy12131        164 VDTYS--GIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS-RPSKAYVFA  239 (245)
Q Consensus       164 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~-~~s~~~~~~  239 (245)
                      +.+.+  |...|.+.|...+  ..   +.....        ...+.|..+...+.+.|.|.|.|..|.. ..|..+.++
T Consensus       194 ~~~~p~~p~~~~~~~w~~~~--~~---~~~~~~--------~~~L~i~~v~~~d~G~Y~C~a~n~~G~~~~~s~~~~l~  259 (262)
T 3rjd_A          194 TKLLLQRPGLQLYFSFYMGS--KT---LRGRNT--------SSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQ  259 (262)
T ss_dssp             CCCCCC-----EEEEEEETT--EE---EEEEES--------CCEEEESSCCGGGCEEEEEEEEETTSSCEEECCCEEEC
T ss_pred             cccCCCCCCccEEEEEEeCC--cE---ecccCC--------CceEEEEEechhhCeEEEEEEEcccCceEEecCCeEEE
Confidence            97764  4444544333321  11   111111        1568899999999999999999999964 445555554

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.92  E-value=1.2e-24  Score=166.09  Aligned_cols=226  Identities=12%  Similarity=0.056  Sum_probs=131.3

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEee----cceEEecCCCeEEEEEEE-----eecCC
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE----KQWIHTAPDMRAEIICNV-----YANPP   78 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~----~~~~~~~~g~~~~l~C~~-----~~~~~   78 (245)
                      ..+..|.|.+++.+|+|.|+|.|.|..+. ....+.|.|..+|.+...    +....+..|+.+.|.|.+     .+.|.
T Consensus        76 ~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~  154 (349)
T 4dep_C           76 KEKDVLWFRPTLLNDTGNYTCMLRNTTYC-SKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVK  154 (349)
T ss_dssp             EETTEEEESSCCGGGCEEEEEEEECSSCE-EEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSC
T ss_pred             ecCCEEEEccCChhhCEEEEEEEecCCce-EEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCC
Confidence            34567999999999999999999998776 567788888876543222    234567899999999985     67888


Q ss_pred             CeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC-cee---EEEEEEEecCC-----CCccccC
Q psy12131         79 AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL-GSS---QQFIQLSGIPN-----IPVFQKS  149 (245)
Q Consensus        79 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~-g~~---~~~~~~~~~~~-----~p~~~~~  149 (245)
                      +.+.|++++..+.....+..  .  ...|.|.++..+|.|.|+|.+.|.. |..   ...+.+.+...     +|.+...
T Consensus       155 ~~v~W~k~~~~l~~~~~~~~--~--~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~  230 (349)
T 4dep_C          155 PTITWYMGCYKIQNFNNVIP--E--GMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSP  230 (349)
T ss_dssp             CEEEEEETTEECCSCSSEEE--E--TTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC--
T ss_pred             ceEEEeeCCEECCCccceee--c--CCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecC
Confidence            99999999998865433322  1  2479999999999999999999986 543   55666665432     4444332


Q ss_pred             c-----cccCCCeeEEEEEeCCC---CCceEEEEEEEeecCCCCe--EEEeeCC---CCCCCcceeeeEEEecCCCCCce
Q psy12131        150 S-----RRLGPDGYRLVWQVDTY---SGIIQYLLKFREREELTPW--RNIVIPS---DGSLAGPIYTQSYNITGLQLFTQ  216 (245)
Q Consensus       150 ~-----~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~i~~l~~~~~  216 (245)
                      .     ....++.+.|.|.+.++   .|...+ .|+++.. ....  .......   ............+.|.++...+.
T Consensus       231 ~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v-~W~~~g~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  308 (349)
T 4dep_C          231 NDHVVYEKEPGEELLIPCTVYFSFLMDSRNEV-WWTIDGK-KPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDL  308 (349)
T ss_dssp             --------------CCCEEEEECCCTTCCCEE-EEESSCC---------CCCCEEEECCTTCCEEEEECC----------
T ss_pred             CCceeEEEecCCcEEEEEEEEEccCCCCCCEE-EEEECCE-EccccCCccccccceeeecCCCcEEEEEEEEeeccHHHc
Confidence            2     44568899999999632   122222 2443332 0000  0000000   00001112234578888888888


Q ss_pred             -EEEEEEEEecCCCCCCCcceEEec
Q psy12131        217 -YEASVLAKNRFGWSRPSKAYVFAT  240 (245)
Q Consensus       217 -y~~~v~a~N~~G~~~~s~~~~~~t  240 (245)
                       +.|+|.|.|..|....+..+.+..
T Consensus       309 ~G~Y~C~a~N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          309 KRSYVCHARSAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             ---CEEEEECSSCEEEEECC-----
T ss_pred             CCcEEEEEEcCCCcEEEEEEEeeec
Confidence             888888999999887777777654

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.92  E-value=6.4e-23  Score=166.64  Aligned_cols=218  Identities=15%  Similarity=0.152  Sum_probs=152.0

Q ss_pred             cceEEEe----ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecC
Q psy12131          2 KEIELLY----NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP   77 (245)
Q Consensus         2 ~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~   77 (245)
                      +|+.+..    +...|.|.+++.+|+|.|+|.+.+..+. .+..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.+
T Consensus        62 ~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~~~n~~~~-~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~  140 (585)
T 2ocw_A           62 GRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRG-LSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTEN  140 (585)
T ss_pred             ceEEEEecCCCCEEEEEECCCCcccCEEEEEEcccCCCC-ceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCC
Confidence            4666653    2246999999999999999999998776 5788999999999988878888899999999999998654


Q ss_pred             -CCeEEEEECCEEec-------------cCCcEEEEecCc---eeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131         78 -PAKVEWFRDGTAIT-------------LGGRIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus        78 -~~~~~w~~~~~~~~-------------~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                       .+.+.|++++....             ...++.+...+.   ...|.|.++...|.|.|+|.+.|..|.....+.|.+.
T Consensus       141 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~  220 (585)
T 2ocw_A          141 AQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVL  220 (585)
T ss_pred             CCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEc
Confidence             56899999874321             123344433322   3479999999999999999999999988788888877


Q ss_pred             CCCCccccCccccCCCeeEEEEEeCCCCCc-eEEEEEEEeecCCCCe------------EEEeeCCCCCCCcceeeeEEE
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQVDTYSGI-IQYLLKFREREELTPW------------RNIVIPSDGSLAGPIYTQSYN  207 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~  207 (245)
                      ..+|....   ...++.+.|.|......|. ..|.+.+++.......            ..+.....    .......+.
T Consensus       221 ~~~p~~~~---~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~L~  293 (585)
T 2ocw_A          221 KPEPELVY---EDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQ----DKDGSFSVV  293 (585)
T ss_pred             cCCCceeE---EcCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeecc----CCCcEEEEE
Confidence            65554432   3578899999998443332 3443222332100000            00000000    000113688


Q ss_pred             ecCCCCCceEEEEEEEEecC
Q psy12131        208 ITGLQLFTQYEASVLAKNRF  227 (245)
Q Consensus       208 i~~l~~~~~y~~~v~a~N~~  227 (245)
                      |.++...+.+.|+|.|.|..
T Consensus       294 i~~v~~~d~G~Y~C~a~n~g  313 (585)
T 2ocw_A          294 ITGLRKEDAGRYLCGAHSDG  313 (585)
T ss_pred             EccCChhhCEEEEEEEEcCC
Confidence            99999999999999999963

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.92  E-value=1.1e-24  Score=163.45  Aligned_cols=220  Identities=14%  Similarity=0.115  Sum_probs=145.1

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEe--ecceEEecCCCeEEEEEEE-eecCCCeEEEEEC
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV--EKQWIHTAPDMRAEIICNV-YANPPAKVEWFRD   86 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~--~~~~~~~~~g~~~~l~C~~-~~~~~~~~~w~~~   86 (245)
                      ..+|.|.+++.+|+|.|+|.|.+..+...+..+.+.+..+|.+..  .+.......++.+.|.|.+ .|.|.+.+.|+++
T Consensus        73 ~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~  152 (308)
T 4fom_A           73 DATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGD  152 (308)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCC
T ss_pred             ceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEEC
Confidence            356999999999999999999987544366777788877666543  2344445678899999975 6889999999998


Q ss_pred             CEEeccCCcEEE-EecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE--EEEEEecCCCCcccc----CccccCCCeeE
Q psy12131         87 GTAITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ--FIQLSGIPNIPVFQK----SSRRLGPDGYR  159 (245)
Q Consensus        87 ~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~--~~~~~~~~~~p~~~~----~~~~~~~~~~~  159 (245)
                      +..+........ ......+.|.|..+...|.|.|+|.+.|..+....  .+.|.+. .+|.+..    ......++.+.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~-~~P~~~~~~~~~~~~~~g~~v~  231 (308)
T 4fom_A          153 LGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQ-YAPEVSVTGYDGNWFVGRKGVN  231 (308)
T ss_dssp             SSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCC-EEEEECCBCCCSCEETTCCSCE
T ss_pred             CcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEe-cCCeeEEcccceeeeeccccEE
Confidence            876543211000 00011346899999999999999999998765443  3333332 2222211    12335677899


Q ss_pred             EEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEe
Q psy12131        160 LVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~  239 (245)
                      |.|.+.++++...+. |+++..   ..........        ...+.|..+...+.+.|+|.|.|.+|....+..+.|.
T Consensus       232 l~C~~~g~P~p~~v~-W~k~~~---~~~~~~~~~~--------~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~  299 (308)
T 4fom_A          232 LKCNADANPPPFKSV-WSRLDG---QWPDGLLASD--------NTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYIS  299 (308)
T ss_dssp             EECCEEEESCEEEEE-CCBSSS---CCCSSCBCST--------TEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEE
T ss_pred             EEEEEecCCCCcEEE-EEECCe---ECCCcEEEcC--------CeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            999997775543333 554432   1100001111        1445677888888888888899999988777777776


Q ss_pred             cCC
Q psy12131        240 TEG  242 (245)
Q Consensus       240 t~~  242 (245)
                      .+|
T Consensus       300 ~~P  302 (308)
T 4fom_A          300 DPP  302 (308)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            654

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.92  E-value=7.9e-24  Score=163.34  Aligned_cols=216  Identities=15%  Similarity=0.133  Sum_probs=150.6

Q ss_pred             eEEEeecceEEEeccCCCCCEEEEEEEEcCCCCc----eeeEEEEEEe------cCCeEEee-cceEEecCCCeEEEEEE
Q psy12131          4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGES----TSKNFIVNVI------YPPEVSVE-KQWIHTAPDMRAEIICN   72 (245)
Q Consensus         4 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~l~C~   72 (245)
                      ..+..+...|.|.+++.+|+|.|+|.+.+..|..    .+..+.|.|.      .+|.+... +....+..|+.+.|.|.
T Consensus       151 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~  230 (382)
T 1cs6_A          151 RFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECF  230 (382)
T ss_dssp             EEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECE
T ss_pred             EEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEE
Confidence            3334444679999999999999999999876531    1233455543      24555443 44667889999999999


Q ss_pred             EeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCccc--cCc
Q psy12131         73 VYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQ--KSS  150 (245)
Q Consensus        73 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~--~~~  150 (245)
                      +.+.|.+.+.|++++..+...      .......|.|.++..+|.|.|+|.+.|..|.....+.+.+...|....  ...
T Consensus       231 ~~g~p~~~i~W~~~~~~~~~~------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~  304 (382)
T 1cs6_A          231 AFGNPVPQIKWRKLDGSQTSK------WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDT  304 (382)
T ss_dssp             EEEESCCEEEEEECCSCCSCC------CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCE
T ss_pred             EccCCCCEEEEEECCcccccE------EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCcc
Confidence            999999999999987655431      112345799999999999999999999999877777766543222111  112


Q ss_pred             cccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCC
Q psy12131        151 RRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG  228 (245)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G  228 (245)
                      ....++.+.|.|.+.+.++..  ..|+++..  .......+            ....+.|.++...+.+.|+|.|.|..|
T Consensus       305 ~~~~g~~~~l~C~~~g~p~p~--v~W~~~g~~~~~~~~~~~------------~~~~L~i~~v~~~d~G~Y~C~a~N~~G  370 (382)
T 1cs6_A          305 EADIGSDLRWSCVASGKPRPA--VRWLRDGQPLASQNRIEV------------SGGELRFSKLVLEDSGMYQCVAENKHG  370 (382)
T ss_dssp             EEETTCCEEEECEEEEESCCE--EEEEETTEECCCCSSEEE------------ETTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EEcCCCeEEEEEEeeeecCCE--EEEEECCEECCCCceEEE------------ECCEEEECcCCcccCEEEEEEEEeCCC
Confidence            346788999999997654432  23555433  11111111            114688999999999999999999999


Q ss_pred             CCCCCcceEEe
Q psy12131        229 WSRPSKAYVFA  239 (245)
Q Consensus       229 ~~~~s~~~~~~  239 (245)
                      ....+..+.|.
T Consensus       371 ~~~~~~~l~V~  381 (382)
T 1cs6_A          371 TVYASAELTVQ  381 (382)
T ss_dssp             EEEEEEEEEEE
T ss_pred             eEEEEEEEEEe
Confidence            88766666553

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.91  E-value=2.4e-23  Score=157.65  Aligned_cols=219  Identities=12%  Similarity=0.113  Sum_probs=145.8

Q ss_pred             cceEEEeccCCCCCE-EEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecC-CCeEEEEECC
Q psy12131         10 RESLDLDRVTLKLAG-LYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDG   87 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~w~~~~   87 (245)
                      +.+|.|.+++.+|+| .|+|.|.|..|......+.+.+..+|.+........+.+|+.+.|.|.+.+.| .+.+.|++++
T Consensus        88 ~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~  167 (329)
T 3oq3_B           88 NGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNN  167 (329)
T ss_dssp             TTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETT
T ss_pred             cceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECC
Confidence            567999999999999 99999999887643333334455566654444444466799999999999999 8999999999


Q ss_pred             EEecc-CCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC--CceeEE----EEEEEecCCC----CccccC-ccccCC
Q psy12131         88 TAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN--LGSSQQ----FIQLSGIPNI----PVFQKS-SRRLGP  155 (245)
Q Consensus        88 ~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~--~g~~~~----~~~~~~~~~~----p~~~~~-~~~~~~  155 (245)
                      ..+.. ..++...    ...|.|.++..+|.|.|+|.+.|.  .|....    .+.+.+...+    |.+... .....+
T Consensus       168 ~~l~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G  243 (329)
T 3oq3_B          168 QELIIDGTKYSQS----GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIG  243 (329)
T ss_dssp             EECCCSSSSEEEE----TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTT
T ss_pred             ccCCCCCceEecC----CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecC
Confidence            88753 3344332    257999999999999999999987  543333    2555554433    333111 234678


Q ss_pred             CeeEEEEEeCCCC---CceEEEEEEEeecC----CCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceE-EEEEEEEecC
Q psy12131        156 DGYRLVWQVDTYS---GIIQYLLKFREREE----LTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY-EASVLAKNRF  227 (245)
Q Consensus       156 ~~~~l~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y-~~~v~a~N~~  227 (245)
                      +.+.|.|.+.+.+   +...+ .|+++...    ...........     .......+.|.++...+.+ .|+|.|.|.+
T Consensus       244 ~~~~l~C~~~g~p~~~~~i~v-~W~~~g~~i~~~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~  317 (329)
T 3oq3_B          244 EPANITCTAVSTSLLVDDVLI-DWENPSGWIIGLDFGVYSILTSS-----GGITEATLYFENVTEEYIGNTYTCRGHNYY  317 (329)
T ss_dssp             SCEEEEEEEEETTCCTTCCEE-EEECTTSCBCCBCSSEEEEEEEE-----TTEEEEEEEESSCCGGGTTCEEEEEEECSS
T ss_pred             CCEEEEEEEEECCCCCCCcEE-EEEECCeeeeccCCceeeeeccc-----CceeEeEEEEEeccHHHCCCcEEEEEEecC
Confidence            8999999996654   22122 24443220    01000000000     0123467899999888888 8888899999


Q ss_pred             CCCCCCcceEE
Q psy12131        228 GWSRPSKAYVF  238 (245)
Q Consensus       228 G~~~~s~~~~~  238 (245)
                      |....+..+.+
T Consensus       318 G~~~~~~~l~v  328 (329)
T 3oq3_B          318 FDKTLTTTVVL  328 (329)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CceEEEEEEEe
Confidence            98766554443

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.91  E-value=9.5e-25  Score=162.50  Aligned_cols=223  Identities=16%  Similarity=0.134  Sum_probs=147.5

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeE-EeecceEEecCCCeEEEEEEEeecCC--CeEEEEEC
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV-SVEKQWIHTAPDMRAEIICNVYANPP--AKVEWFRD   86 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~w~~~   86 (245)
                      .+.|.|.+++.+|+|.|+|.+.|..+. .+..+.|.|..+|.. ...+....+.+|+.+.|.|.+.+ +.  +.+.|+++
T Consensus        50 ~~~L~i~~~~~~d~G~Y~C~~~n~~~~-~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~  127 (292)
T 4dkd_C           50 SSILSTNNATFQNTGTYRCTEPGDPLG-GSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRV  127 (292)
T ss_dssp             EEEEEESSCCGGGCSCEEECCCC-----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEG
T ss_pred             eEEEEEcccccccCEEEEEEEccCCCC-cceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEec
Confidence            357999999999999999999998777 588888999987764 44556677889999999999987 44  68999986


Q ss_pred             -CEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE-EEEEEecC---CCCccccC---ccccCCCee
Q psy12131         87 -GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FIQLSGIP---NIPVFQKS---SRRLGPDGY  158 (245)
Q Consensus        87 -~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~~~~~~---~~p~~~~~---~~~~~~~~~  158 (245)
                       +..+....++....   ...|.|.++...|.|.|+|.+.|..+.... .+.+.+..   .+|.+...   .....++.+
T Consensus       128 ~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v  204 (292)
T 4dkd_C          128 RGRPLMRHTNYSFSP---WHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAA  204 (292)
T ss_dssp             GGCCCCSSCCEECCS---SSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCE
T ss_pred             CCCccccCCcccccC---CceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCE
Confidence             55555544444332   234999999999999999999988775432 45555443   24443332   223578899


Q ss_pred             EEEEEeCCCCCceEEEEEEEeec-CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceE
Q psy12131        159 RLVWQVDTYSGIIQYLLKFRERE-ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYV  237 (245)
Q Consensus       159 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~  237 (245)
                      .|.|.+.+.++...|. |+++.. ........ ....    .......+.|.++...+.+.|+|.|.|..|....+..+.
T Consensus       205 ~l~C~~~~~~~~~~~~-w~~~~~~~~~~~~~~-~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~  278 (292)
T 4dkd_C          205 QIVCSASSVDVNFDVF-LQHNNTKLAIPQQSD-FHNN----RYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFR  278 (292)
T ss_dssp             EEEEEEEESSSCCEEE-CCBSSCCCCCCBEEE-EETT----EEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEEC
T ss_pred             EEEEEecCCCCceEEE-EeCCCcccccCccce-eccc----eeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEE
Confidence            9999997554432222 233322 00111100 0000    011225789999999999999999999999877766666


Q ss_pred             EecCCC
Q psy12131        238 FATEGA  243 (245)
Q Consensus       238 ~~t~~~  243 (245)
                      |.....
T Consensus       279 V~~~~~  284 (292)
T 4dkd_C          279 VVESAG  284 (292)
T ss_dssp             C-----
T ss_pred             EeeCCC
Confidence            655443

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.91  E-value=2e-22  Score=155.88  Aligned_cols=225  Identities=16%  Similarity=0.233  Sum_probs=152.4

Q ss_pred             ceEEEee--cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEee----c
Q psy12131          3 EIELLYN--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA----N   76 (245)
Q Consensus         3 ~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~----~   76 (245)
                      ++.+..+  ...|.|.+++.+|+|.|+|.|.|..|. ....+.|.+..+|....... .....+..+.|.|....    .
T Consensus       148 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~-~~~~~~l~v~~~P~~P~~~~-~~~~~~~~~~l~w~~p~~~~g~  225 (389)
T 2jll_A          148 NLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGT-RFQEYILALADVPSSPYGVK-IIELSQTTAKVSFNKPDSHGGV  225 (389)
T ss_dssp             TEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEE-EEEEEEEEECCCCCCCEEEE-EEEECSSCEEEEEECCSCCTTS
T ss_pred             eEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCc-EEEEEEEEecCCCCCCcceE-EeeccCCEEEEEEeCCCCCCCc
Confidence            4555433  346999999999999999999999888 56777888876665322211 12234677888887421    1


Q ss_pred             CCC--eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE--EEEEEe----cCCCCcccc
Q psy12131         77 PPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ--FIQLSG----IPNIPVFQK  148 (245)
Q Consensus        77 ~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~--~~~~~~----~~~~p~~~~  148 (245)
                      +..  .+.|.+++..    .+..+........+.|.++...+.|.|+|.|.|..|....  .+.+..    .|.+|... 
T Consensus       226 pi~~y~v~~~~~~~~----~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p~~~-  300 (389)
T 2jll_A          226 PIHHYQVDVKEVASE----IWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIH-  300 (389)
T ss_dssp             CEEEEEEEEEETTCS----CCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCCCEE-
T ss_pred             ceEEEEEEEEECCCc----ccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCCccc-
Confidence            222  4667765541    2223333334567999999999999999999999876443  222222    34444322 


Q ss_pred             CccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEE-EeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEe
Q psy12131        149 SSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRN-IVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKN  225 (245)
Q Consensus       149 ~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N  225 (245)
                       ......+++.|.|.+  ++++++.+|.++|+... ...|.. .......        ..+.+.+|.+++.|.|+|.|.|
T Consensus       301 -~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~--------~~~~i~~L~~~t~Y~~~V~A~n  370 (389)
T 2jll_A          301 -GQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKD-KEDQWLEKKVQGNK--------DHIILEHLQWTMGYEVQITAAN  370 (389)
T ss_dssp             -EEEETTTEEEEEECCCCCCSSCCCEEEEEEEC------CCBCCEECTTC--------CEEEECSCCTTCEEEEEEEEEC
T ss_pred             -cccCcCCEEEEEEECCCCCCCcccEEEEEEEeCC-CCcceeEeeccCCc--------ceEEeCCcCCCCEEEEEEEEEc
Confidence             223577899999998  44578999999999865 455642 2222222        6789999999999999999999


Q ss_pred             cCCCCCCCcceEEecCCCCC
Q psy12131        226 RFGWSRPSKAYVFATEGAET  245 (245)
Q Consensus       226 ~~G~~~~s~~~~~~t~~~~~  245 (245)
                      ..|.|.+|.. .++|.+.|+
T Consensus       371 ~~G~s~~s~~-~~~T~~~P~  389 (389)
T 2jll_A          371 RLGYSEPTVY-EFSMPPKPN  389 (389)
T ss_dssp             -CCBCCCEEE-EEECCCCCC
T ss_pred             CCcCCCceee-EecCCCCCC
Confidence            9999999855 888888774

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.91  E-value=5.5e-22  Score=162.82  Aligned_cols=216  Identities=19%  Similarity=0.301  Sum_probs=150.2

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCe-EEeecceEEecCCCeEEEEEEEeecCCCe
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE-VSVEKQWIHTAPDMRAEIICNVYANPPAK   80 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~~   80 (245)
                      .|+.+..++..|.|.+++.+|+|.|+|.|.|..+...+..+.|.|..+|. +...+....+..|+.+.|.|.+.+.|.+.
T Consensus       155 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~  234 (642)
T 1e07_A          155 PRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQ  234 (642)
T ss_pred             CceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCcE
Confidence            45666666778999999999999999999998876556778888886544 33344555678999999999999999999


Q ss_pred             EEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE--EEEEEec--CCCCccccC--ccccC
Q psy12131         81 VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ--FIQLSGI--PNIPVFQKS--SRRLG  154 (245)
Q Consensus        81 ~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~--~~~~~~~--~~~p~~~~~--~~~~~  154 (245)
                      +.|++++..+..           ...|.|.++...|.|.|+|.+.|..|....  .+.+.+.  +.+|.+...  .....
T Consensus       235 i~W~~~g~~i~~-----------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~~~~  303 (642)
T 1e07_A          235 YSWFVNGTFQQS-----------TQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVED  303 (642)
T ss_pred             EEEEECCeEccc-----------CCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEcCCceeEec
Confidence            999999987643           235899999999999999999998875443  3344443  233333221  22234


Q ss_pred             CCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCC-C
Q psy12131        155 PDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP-S  233 (245)
Q Consensus       155 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~-s  233 (245)
                      ++.+.|.|.+.+.++  .+ .|+++...-.....+......        ..+.|.++...+.+.|+|.|.|..|.... +
T Consensus       304 g~~v~l~C~~~~~p~--~v-~W~~~g~~l~~~~~~~~~~~~--------~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~  372 (642)
T 1e07_A          304 EDAVALTCEPEIQNT--TY-LWWVNNQSLPVSPRLQLSNDN--------RTLTLLSVTRNDVGPYECGIQNELSVDHSDP  372 (642)
T ss_pred             CCcEEEEEECCCCCc--cE-EEEECCccCCCcCCEEEeCCC--------CEEEEeccCcccCeeEEEEEeCCCCCcceee
Confidence            667999999976643  23 345543310000111111111        46888899889999999999999986432 2


Q ss_pred             cceEEe
Q psy12131        234 KAYVFA  239 (245)
Q Consensus       234 ~~~~~~  239 (245)
                      ..+.+.
T Consensus       373 ~~l~V~  378 (642)
T 1e07_A          373 VILNVL  378 (642)
T ss_pred             EEEEEE
Confidence            344444

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.91  E-value=1.5e-23  Score=157.78  Aligned_cols=223  Identities=17%  Similarity=0.225  Sum_probs=147.3

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe-cCCeEEeec---ceEEecCCCeEEEEEEE------eecCCC
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-YPPEVSVEK---QWIHTAPDMRAEIICNV------YANPPA   79 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~-~~p~~~~~~---~~~~~~~g~~~~l~C~~------~~~~~~   79 (245)
                      +..|.|.+++.+|+|.|+|.+.|..|. ....+.+.+. .+|.+...+   ....+..|+.+.|.|.+      .|.|.+
T Consensus        61 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~  139 (315)
T 1itb_B           61 KEKLWFVPAKVEDSGHYYCVVRNSSYC-LRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELP  139 (315)
T ss_dssp             SSBEECTTCCGGGCSCCEECCCSSSCC-CCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCC
T ss_pred             CCeEEECCCChhhCEEEEEEEeCCceE-EEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCC
Confidence            447999999999999999999998776 4555555544 345443222   23457789999999998      788999


Q ss_pred             eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEE-eCCcee---EEEEEEEec----CCCCccccCc-
Q psy12131         80 KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS-NNLGSS---QQFIQLSGI----PNIPVFQKSS-  150 (245)
Q Consensus        80 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~-n~~g~~---~~~~~~~~~----~~~p~~~~~~-  150 (245)
                      .+.|++++..+..........   ...|.|.++..+|.|.|+|.+. |..|..   ...+.+.+.    +.+|.+.... 
T Consensus       140 ~i~W~k~~~~l~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~  216 (315)
T 1itb_B          140 KLQWYKDCKPLLLDNIHFSGV---KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPAN  216 (315)
T ss_dssp             CCEEEETTEECCCCSSSEEEE---TTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCS
T ss_pred             EEEEEECCEECCCccceEeec---CceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCC
Confidence            999999999886533222222   2379999999999999999999 777765   334444333    3455554322 


Q ss_pred             ---cccCCCeeEEEEEeCCCCCceEEEEEEEeec---CCCC---eEEEeeCCCCCCCcceeeeEEEecCCCCCc-eEEEE
Q psy12131        151 ---RRLGPDGYRLVWQVDTYSGIIQYLLKFRERE---ELTP---WRNIVIPSDGSLAGPIYTQSYNITGLQLFT-QYEAS  220 (245)
Q Consensus       151 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~y~~~  220 (245)
                         ....++.+.|.|.+.+.++. .+ .|+++..   ....   ....................+.|.++...+ .+.|+
T Consensus       217 ~~~~~~~g~~v~l~C~~~g~P~p-~i-~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~  294 (315)
T 1itb_B          217 ETMEVDLGSQIQLICNVTGQLSD-IA-YWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFT  294 (315)
T ss_dssp             EEEECCSSSCEEEEEEEEECTTS-EE-EEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEE
T ss_pred             CcEEEeCCCcEEEEEEEecCCCC-ee-EEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceE
Confidence               35678899999999766443 22 3554432   1111   011111111100111223578999998877 77777


Q ss_pred             EEEEecCCCCCCCcceEE
Q psy12131        221 VLAKNRFGWSRPSKAYVF  238 (245)
Q Consensus       221 v~a~N~~G~~~~s~~~~~  238 (245)
                      |.|.|.+|....+..+.+
T Consensus       295 C~a~N~~G~~~~~~~l~v  312 (315)
T 1itb_B          295 CFAKNTHGIDAAYIQLIY  312 (315)
T ss_dssp             EEEECTTCCEEEEEEEEC
T ss_pred             EEEecCCCceeEEEEEEe
Confidence            789999998876655554

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.91  E-value=1e-22  Score=171.31  Aligned_cols=217  Identities=16%  Similarity=0.179  Sum_probs=157.3

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEe
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAI   90 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~   90 (245)
                      +.|.|.+++.+|+|.|+|.|.|..|. ....+.|.|..+|.+... ....+..|+.+.|.|.+.+.|.+.+.|++++..+
T Consensus       490 ~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~-~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l  567 (816)
T 3dmk_A          490 SYLNITSVHANDGGLYKCIAKSKVGV-AEHSAKLNVYGLPYIRQM-EKKAIVAGETLIVTCPVAGYPIDSIVWERDNRAL  567 (816)
T ss_dssp             EEEEESSCCTTTCEEEEEEEEETTEE-EEEEEEEEECSSCEECCC-CCEEEETTCCEEEECCEECSSEEEEEEEETTEES
T ss_pred             EEEEEeeccccCCEEEEEEEEECCCe-EEEEEEEEEecCCeeEcc-CCeEEecCCeEEEEEEecCCCCCEEEEEECCeEc
Confidence            35999999999999999999999887 678889999998866443 3456779999999999999998999999999988


Q ss_pred             ccCCcEEEEecCceeEEEEccCC-CCCCeEEEEEEEeCCcee-EEEEEEEecCCCCccc---cCccccCCCeeEEEEEeC
Q psy12131         91 TLGGRIDMHVSSEKHSLLVRHIK-DTDFGNYMCQASNNLGSS-QQFIQLSGIPNIPVFQ---KSSRRLGPDGYRLVWQVD  165 (245)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~-~~~~~~~~~~~~p~~~---~~~~~~~~~~~~l~~~~~  165 (245)
                      ....+..+..   ...|.|.++. ..|.|.|+|.+.|..|.. ...+.+.+...|+...   .......++.+.|.|.+.
T Consensus       568 ~~~~~~~~~~---~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~  644 (816)
T 3dmk_A          568 PINRKQKVFP---NGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVP  644 (816)
T ss_dssp             CCSTTEEECT---TSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCC
T ss_pred             ccCCceEEec---CCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEe
Confidence            7766655443   3379999998 589999999999998853 3355555443332221   223356789999999996


Q ss_pred             CCCCceEEEEEEEeec---CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecC
Q psy12131        166 TYSGIIQYLLKFRERE---ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE  241 (245)
Q Consensus       166 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~  241 (245)
                      ++++...+. |+++..   ....+.......        ....+.|.++...+.+.|+|.|.|..|....+..+.+..+
T Consensus       645 ~~~~~~~i~-W~~~g~~l~~~~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~  714 (816)
T 3dmk_A          645 GGDLPLNID-WTLDGQAISEDLGITTSRVGR--------RGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVP  714 (816)
T ss_dssp             CSSSCCEEE-EEETTBCCCGGGTCEEEEETT--------TEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEE
T ss_pred             CCCCCCEEE-EEECCeEcCCCCCeeEEEcCC--------CeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeC
Confidence            554433333 444433   111121111111        1267899999999999999999999998876666655543

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.91  E-value=7.4e-23  Score=163.70  Aligned_cols=206  Identities=12%  Similarity=0.089  Sum_probs=135.0

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeec--ceEEecCCCeEEEEEEEeecCCCeEEEEECCE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK--QWIHTAPDMRAEIICNVYANPPAKVEWFRDGT   88 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~   88 (245)
                      ..|.|.+++.+|+|.|+|.|.|.    .++.+.|.|..+|.+...+  ....+.+|+.+.|.|.+.|.|.|.+.|++++.
T Consensus       290 ~~L~I~~v~~~DsG~Y~C~a~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~  365 (527)
T 3qs9_E          290 LFAFVSSVARNDTGYYTCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRK  365 (527)
T ss_dssp             EEEEESSCCGGGCEEEEEEETTE----EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTE
T ss_pred             EEEEEccCCcccCeEEEEEEEeC----CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCE
Confidence            45999999999999999999987    5778889999888876544  34567789999999999999999999999999


Q ss_pred             EeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCccccCccccCCCeeEEEEEeCCCC
Q psy12131         89 AITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYS  168 (245)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~  168 (245)
                      .+.......    .....|.|.++..+|.|.|+|.|.|..|.....+.|.+. .+|.+....     ....|.|.+.+.+
T Consensus       366 ~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~-~~P~i~~~~-----~~~~l~C~a~g~P  435 (527)
T 3qs9_E          366 SFPCEQKGL----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR-RKPQVLAEA-----SASQASCFSDGYP  435 (527)
T ss_dssp             EEECBCCBC----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC---CCCEEEECC-----CCE---EEEECSS
T ss_pred             ECcCCcccc----cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEe-cCCeEEEeC-----CCCEEEEEEEEEc
Confidence            886554321    134579999999999999999999999998888888776 444443332     1345799997765


Q ss_pred             CceEEEEEEEeecCC---------CCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcce
Q psy12131        169 GIIQYLLKFREREEL---------TPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAY  236 (245)
Q Consensus       169 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~  236 (245)
                      +. .+ .|++.....         ..|......  ...........+.+..+.  +.+.|+|.|.|.+|....+..+
T Consensus       436 ~p-~i-~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~L~i~~~~--d~G~Y~C~A~N~~G~~~~~~~L  506 (527)
T 3qs9_E          436 LP-SW-TWKKCSDKSPNCTEEITEGVWNRKANR--KVFGQWVSSSTLNMSEAI--KGFLVKCCAYNSLGTSCETILL  506 (527)
T ss_dssp             CC-EE-EEECCC-----CCCCCCCCEEEC-----------CEEEEECCCCCSS--CSCEEEEEEECSSCEEEEEEEC
T ss_pred             CC-eE-EEEECCCCcCCCccccccccceecccc--ccCCceEEEEEEEEEEcC--CCEEEEEEEEeCCCCceeEEEE
Confidence            43 22 233332100         012111100  000111122344444544  4555566699999987665544

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.91  E-value=4.5e-22  Score=167.45  Aligned_cols=214  Identities=18%  Similarity=0.213  Sum_probs=160.1

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGT   88 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~   88 (245)
                      ...+|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++.
T Consensus       304 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~  382 (816)
T 3dmk_A          304 VSGTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGK  382 (816)
T ss_dssp             ETTEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTE
T ss_pred             ccceEEECCCCHhHCEEEEEEEEcCCCc-eEEEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCE
Confidence            3567999999999999999999998887 677888999888888878888888999999999999999999999999998


Q ss_pred             EeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec--CCCCccccC---ccccCCCeeEEEEE
Q psy12131         89 AITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI--PNIPVFQKS---SRRLGPDGYRLVWQ  163 (245)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~--~~~p~~~~~---~~~~~~~~~~l~~~  163 (245)
                      .+...          ...|.|.++..+|.|.|+|.+.|..|.......+.+.  ..||.+...   .....+..+.|.|.
T Consensus       383 ~~~~~----------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~  452 (816)
T 3dmk_A          383 AIGHS----------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCV  452 (816)
T ss_dssp             ECSCC----------SSEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEE
T ss_pred             ECCCC----------CCEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEE
Confidence            87643          2369999999999999999999999877776666553  345544332   23467889999999


Q ss_pred             eCCCCCceEEEEEEEeec---CCCCeEE-EeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEe
Q psy12131        164 VDTYSGIIQYLLKFRERE---ELTPWRN-IVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~  239 (245)
                      +.+.++. .+ .|+++..   ....+.. .......     .....+.|..+...+.+.|+|.|.|..|....+..+.+.
T Consensus       453 ~~g~p~p-~v-~W~~~g~~l~~~~~~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  525 (816)
T 3dmk_A          453 AGGNPTP-EI-SWELDGKKIANNDRYQVGQYVTVNG-----DVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY  525 (816)
T ss_dssp             EECSSCC-EE-EEEETTEECCSCTTEEEEEEECTTS-----CEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EecCCCC-EE-EEEECCEECCCCCCcccccEEecCC-----CcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEe
Confidence            9766443 22 2444332   1111111 0011111     122468899999999999999999999987666666554


Q ss_pred             c
Q psy12131        240 T  240 (245)
Q Consensus       240 t  240 (245)
                      .
T Consensus       526 ~  526 (816)
T 3dmk_A          526 G  526 (816)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.90  E-value=2.3e-22  Score=151.41  Aligned_cols=223  Identities=16%  Similarity=0.154  Sum_probs=138.0

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCC----CceeeEEEEEEec---CCeEEeecceEEecCCCeEEEEEEEeecCCCeE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIG----ESTSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKV   81 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~   81 (245)
                      ....|.|.+++.+|+|.|+|.|.+..+    ...+..+.|.|..   +|.+...+... +.+|+.+.|.|.+. .+.+.+
T Consensus        72 ~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~  149 (316)
T 3vh8_G           72 FQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHF  149 (316)
T ss_dssp             BSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEES-SCCSEE
T ss_pred             ceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEE
Confidence            345699999999999999999986432    1245677788864   46666555444 78999999999994 566789


Q ss_pred             EEEECCEEeccCCcE-EEEecCceeEEEEccCCCCCCeEEEEEEEeCCce-------eEEEEEEEecCCCCccccC--cc
Q psy12131         82 EWFRDGTAITLGGRI-DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS-------SQQFIQLSGIPNIPVFQKS--SR  151 (245)
Q Consensus        82 ~w~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~-------~~~~~~~~~~~~~p~~~~~--~~  151 (245)
                      .|++++..+...... ..........|.|.++..+|.|.|+|.+.|..|.       ....+.+...+.+|.+...  ..
T Consensus       150 ~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~  229 (316)
T 3vh8_G          150 FLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPK  229 (316)
T ss_dssp             EEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSC
T ss_pred             EEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCe
Confidence            999988765432111 1112224568999999999999999999998763       2234444443445544332  24


Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEE-eeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC-
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNI-VIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW-  229 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~-  229 (245)
                      ...++.+.|.|.+....+  .| .|+++.. ....... .....     ......|.|..+.  +.+.|+|.|.|..+. 
T Consensus       230 v~~G~~v~L~C~~~~~~~--~~-~W~k~g~-~~~~~~~~~~~~~-----~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~  298 (316)
T 3vh8_G          230 VQAGESVTLSCSSRSSYD--MY-HLSREGG-AHERRLPAVRKVN-----RTFQADFPLGPAT--HGGTYRCFGSFRHSPY  298 (316)
T ss_dssp             CCTTSCCEEEEEESSCCS--EE-EEEETTS-SCCEEEECEECTT-----SCEEEEEECC-------CEEEEEEEBTTBTT
T ss_pred             ecCCCcEEEEEECCCCCc--EE-EEEECCC-cCCCceeceeccC-----CceeEEEEcCCcC--CCEEEEEEeecCCCch
Confidence            577899999999964322  33 3555533 1111111 01111     1122568888888  666777779998774 


Q ss_pred             --CCCCcceEEecCCCC
Q psy12131        230 --SRPSKAYVFATEGAE  244 (245)
Q Consensus       230 --~~~s~~~~~~t~~~~  244 (245)
                        +..|..+.+...+.|
T Consensus       299 ~~s~~S~~~~l~V~g~p  315 (316)
T 3vh8_G          299 EWSDPSDPLLVSVTGNP  315 (316)
T ss_dssp             EECCCCCCEEC------
T ss_pred             hccCCCCcEEEEEeCCC
Confidence              677888877766554

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.90  E-value=9.8e-23  Score=157.86  Aligned_cols=217  Identities=15%  Similarity=0.153  Sum_probs=146.8

Q ss_pred             ceEEEeecceEEEeccCCCCCE---EEEEEEEcCCCCceeeEEE---EEEec----------CCeEEeecceEEecCCCe
Q psy12131          3 EIELLYNRESLDLDRVTLKLAG---LYQCIASNNIGESTSKNFI---VNVIY----------PPEVSVEKQWIHTAPDMR   66 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G---~Y~C~~~~~~~~~~~~~~~---l~v~~----------~p~~~~~~~~~~~~~g~~   66 (245)
                      |+.+..+ ..|.|.+++.+|+|   .|+|.+.|..+.. .....   +.+..          +|.+  .+....+..|+.
T Consensus       154 ~~~~~~~-~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~  229 (395)
T 1bih_A          154 RITAGPD-GNLYFTIVTKEDVSDIYKYVCTAKNAAVDE-EVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDV  229 (395)
T ss_dssp             TEEECTT-SCEEEEEECGGGCCSSEEEEEEEECTTCSS-CEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSC
T ss_pred             cEEEcCC-CcEEEEEEeeccCCCceEEEEEEEecccce-EEEeeeEEecccccccccccCCcCcee--cCCceEEECCCc
Confidence            4444444 45999999999999   9999999988763 22221   11111          2222  344566789999


Q ss_pred             EEEEEEEeecCCCeEEEEECCEEeccCCcEEEE--ecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE-EEEEEecCCC
Q psy12131         67 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMH--VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FIQLSGIPNI  143 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~~~~~~~~  143 (245)
                      +.|.|.+.|.|.+.+.|++++..+.......+.  .......|.|.++..+|.|.|+|.+.|..|.... .+.|.+.. +
T Consensus       230 v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~-~  308 (395)
T 1bih_A          230 TMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS-A  308 (395)
T ss_dssp             EEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEE-E
T ss_pred             EEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEc-C
Confidence            999999999999999999999887654322222  2223347999999999999999999999887544 55555542 2


Q ss_pred             CccccC----ccccCCCeeEEEEEeCCCCCceEEEEEEEeec-CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEE
Q psy12131        144 PVFQKS----SRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE-ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE  218 (245)
Q Consensus       144 p~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  218 (245)
                      |.+...    .....++.+.|.|.+.+.++..  ..|+++.. .....  +...          ...+.|.++...+.+.
T Consensus       309 P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~--v~W~~~g~~~~~~~--~~~~----------~~~L~i~~~~~~d~G~  374 (395)
T 1bih_A          309 PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPN--VVWSHNAKPLSGGR--ATVT----------DSGLVIKGVKNGDKGY  374 (395)
T ss_dssp             EEEEECCCSEEEECTTSCEEEECEEEEESCCC--CEEEETTEECCSSS--EEEE----------TTEEEESSCCSTTCEE
T ss_pred             CccccCCCcceEecCCCeEEEEEEECcccCCe--eEEEECCEECCCCc--eEEE----------CCEEEEeeCCcccCEE
Confidence            222211    2346788999999996654332  23444433 11111  1111          1368899999999999


Q ss_pred             EEEEEEecCCCCCCCcceEE
Q psy12131        219 ASVLAKNRFGWSRPSKAYVF  238 (245)
Q Consensus       219 ~~v~a~N~~G~~~~s~~~~~  238 (245)
                      |+|.|.|..|....+..+.|
T Consensus       375 Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          375 YGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEccCCCceEEEEEEE
Confidence            99999999998766555544

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.90  E-value=4e-22  Score=159.95  Aligned_cols=218  Identities=15%  Similarity=0.136  Sum_probs=142.1

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCc--eeeEEEEEE----ecCCeEEeecceEEecCCCeEEEEEEEeecCCC--eEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGES--TSKNFIVNV----IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KVE   82 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~   82 (245)
                      ..|.|.+++.+|+|.|+|.|.|..|..  ....+.|.|    ..+|.+...+....+..|+.+.|.|.+.|.+++  .+.
T Consensus        70 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~  149 (523)
T 2rcj_C           70 ASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVA  149 (523)
T ss_pred             EEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEE
Confidence            469999999999999999999976531  234567777    356777666655566789999999999988764  899


Q ss_pred             EEECCEEeccCCcEEEE---ecCc---eeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe---cCCCCcccc---Cc
Q psy12131         83 WFRDGTAITLGGRIDMH---VSSE---KHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG---IPNIPVFQK---SS  150 (245)
Q Consensus        83 w~~~~~~~~~~~~~~~~---~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~---~~~~p~~~~---~~  150 (245)
                      |++++..+.........   ..+.   .+.|.|..+..+|.|.|+|.+.|..|.....+.+..   ...+|.+..   ..
T Consensus       150 W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~  229 (523)
T 2rcj_C          150 WKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSS  229 (523)
T ss_pred             EecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCc
Confidence            99999877644322111   1111   246999999999999999999999887666555432   123333221   12


Q ss_pred             cccCCCeeEEEEEeCCC-CCceEEEEEEEeecCCC--CeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecC
Q psy12131        151 RRLGPDGYRLVWQVDTY-SGIIQYLLKFREREELT--PWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF  227 (245)
Q Consensus       151 ~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~  227 (245)
                      ....++.+.|.|.+.+. ++...+ .|+++.....  ...... ...+   .......+.|..+...+ +.|+|.|.|..
T Consensus       230 ~~~~G~~~~l~C~~~g~~P~p~~v-~W~k~g~~~~~~~~~~~~-~~~g---~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~  303 (523)
T 2rcj_C          230 KSTSGGTAALGCLVKDYFPQPVTV-SWNSGALTSGVHTFPAVL-QSSG---LYSLSSVVTVPSSSLGT-QTYICNVNHKP  303 (523)
T ss_pred             ccccCCceEEEEEEeceeCCCeEE-EEecCCcccceEeCCcEe-cCCC---cEEEEEEEEechhhcCC-ceEEEEEEeCC
Confidence            34678999999999665 322222 3444432100  000010 0110   00112467888887777 88888899999


Q ss_pred             CCCCCCc
Q psy12131        228 GWSRPSK  234 (245)
Q Consensus       228 G~~~~s~  234 (245)
                      |....+.
T Consensus       304 g~~~~~~  310 (523)
T 2rcj_C          304 SNTKVDK  310 (523)
T ss_pred             CCcceEE
Confidence            9754433

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.90  E-value=5.3e-22  Score=165.07  Aligned_cols=218  Identities=18%  Similarity=0.156  Sum_probs=157.6

Q ss_pred             EEEecc-CCCCCEEEEEEEEcCCCCceeeEEEEEEe---cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEE-EE--E
Q psy12131         13 LDLDRV-TLKLAGLYQCIASNNIGESTSKNFIVNVI---YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE-WF--R   85 (245)
Q Consensus        13 L~i~~~-~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~-w~--~   85 (245)
                      |.|..+ ....++.|.|.+.+..|......+.+.+.   .+|.+. .+....+..|+.+.|.|.+.|.|.|.+. |+  +
T Consensus       125 ~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~  203 (731)
T 2v5y_A          125 LAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGI  203 (731)
T ss_dssp             EEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEES
T ss_pred             EEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecC
Confidence            555554 23345899998888777644333433332   567766 4456788999999999999999999887 88  6


Q ss_pred             CCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCce-eEE--EEEEEecCCCCccccCccccCCCeeEEEE
Q psy12131         86 DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS-SQQ--FIQLSGIPNIPVFQKSSRRLGPDGYRLVW  162 (245)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~-~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~l~~  162 (245)
                      ++..+.......+......+.|.|.++...|.|.|+|.|.|..|. ...  .+.+...|.+|...... ......+.|.|
T Consensus       204 ~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~-~~~~~~v~l~w  282 (731)
T 2v5y_A          204 DVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLA-SVGATYLWIQL  282 (731)
T ss_dssp             SSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEEE-EECSSCEEEEC
T ss_pred             CCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCccee-ccCCceEEEEe
Confidence            776654332111111223468999999999999999999999987 444  34444445444333222 34567899999


Q ss_pred             Ee---CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEE--ecCCCCCCCcceE
Q psy12131        163 QV---DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAK--NRFGWSRPSKAYV  237 (245)
Q Consensus       163 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~--N~~G~~~~s~~~~  237 (245)
                      .+   +++.++..|.++|+..  ...|..+.....         ..+.|.+|.+++.|.|+|.|.  |..|.+.+|..+.
T Consensus       283 ~~~~~~g~~~i~~Y~v~~~~~--~~~~~~~~~~~~---------~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~  351 (731)
T 2v5y_A          283 NANSINGDGPIVAREVEYCTA--SGSWNDRQPVDS---------TSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALR  351 (731)
T ss_dssp             CCSSBSSCSCCCEEEEEEEES--SSSCEEEEECCS---------SEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEE
T ss_pred             CCcccCCCCccEEEEEEEEEC--CCCceEEeccCc---------ceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEE
Confidence            97   3457899999999884  567876654332         679999999999999999999  9999999999998


Q ss_pred             EecCCC
Q psy12131        238 FATEGA  243 (245)
Q Consensus       238 ~~t~~~  243 (245)
                      ++|.+.
T Consensus       352 ~~t~~~  357 (731)
T 2v5y_A          352 TRTKCA  357 (731)
T ss_dssp             EECCCC
T ss_pred             eeecCC
Confidence            888764

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.90  E-value=4.5e-23  Score=160.18  Aligned_cols=223  Identities=17%  Similarity=0.185  Sum_probs=151.7

Q ss_pred             ceEEEeecceEEEecc-----CCCCCEEEEEEEEcCC-CCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeec
Q psy12131          3 EIELLYNRESLDLDRV-----TLKLAGLYQCIASNNI-GESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN   76 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~-----~~~d~G~Y~C~~~~~~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~   76 (245)
                      |+....+ ..|.|.++     +.+|+|.|+|.+.+.. +...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.
T Consensus        70 ~~~~~~~-~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~  148 (403)
T 3laf_A           70 RKQQLPN-GSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGD  148 (403)
T ss_dssp             TEEECTT-SCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECS
T ss_pred             cEEEecC-CcEEEeeeeccCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEccc
Confidence            3444433 44888888     6779999999999653 333466788888888888777777888999999999999999


Q ss_pred             CCCeEEEEECCEEecc---CCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeE---EEEEEEecCCCCc---cc
Q psy12131         77 PPAKVEWFRDGTAITL---GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ---QFIQLSGIPNIPV---FQ  147 (245)
Q Consensus        77 ~~~~~~w~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~---~~~~~~~~~~~p~---~~  147 (245)
                      |.+.+.|++++..+..   ..+....   ....|.|.++..+|.|.|+|.+.|..|...   ..+.+...|..+.   +.
T Consensus       149 p~~~v~W~~~~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~  225 (403)
T 3laf_A          149 PMPTIHWQKNQQDLNPIPGDSRVVVL---PSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFL  225 (403)
T ss_dssp             SCCEEEEEESSSBCCCCTTCCSEEEC---TTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEE
T ss_pred             CCCeEEEEECCEeccccCCceEEEEc---CCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEe
Confidence            9999999999877642   2222222   234799999999999999999999876532   3344443332221   11


Q ss_pred             c---CccccCCCeeEEEEEeCCCCCceEEEEEEEeec-CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEE
Q psy12131        148 K---SSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE-ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLA  223 (245)
Q Consensus       148 ~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a  223 (245)
                      .   ......++.+.|.|.+.+.++. .+ .|+++.. ............         ...+.|.++...+.+.|+|.|
T Consensus       226 ~~~~~~~~~~g~~~~l~C~~~~~p~~-~~-~W~~~~~~~~~~~~~~~~~~---------~~~L~i~~~~~~d~G~Y~C~a  294 (403)
T 3laf_A          226 QRPSNVIAIEGKDAVLECCVSGYPPP-SF-TWLRGEEVIQLRSKKYSLLG---------GSNLLISNVTDDDSGTYTCVV  294 (403)
T ss_dssp             ECCCCEEEETTSCEEECCEEEEESCC-EE-EEEETTEECCCSSSSEEEET---------TTEEEECSCCGGGCEEEEEEE
T ss_pred             cCCCceEecCCCcEEEEEEcCCCCCC-eE-EEEECCeeccCCCceEEECC---------ccEEEEeCCCHHHCEEEEEEE
Confidence            1   1234578899999999765443 22 3444432 000000011111         146889999999999999999


Q ss_pred             EecCCCCCCCcceEEec
Q psy12131        224 KNRFGWSRPSKAYVFAT  240 (245)
Q Consensus       224 ~N~~G~~~~s~~~~~~t  240 (245)
                      .|..|....+..+.+..
T Consensus       295 ~n~~g~~~~~~~l~V~~  311 (403)
T 3laf_A          295 TYKNENISASAELTVLV  311 (403)
T ss_dssp             EETTEEEEEEEEEEEEE
T ss_pred             EcCCCceEEEEEEEEEC
Confidence            99998766655555543

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.90  E-value=3.2e-23  Score=160.98  Aligned_cols=224  Identities=14%  Similarity=0.183  Sum_probs=150.8

Q ss_pred             ceEEEeecceEEEeccCCCC-CEEEEEEEEcCCCCc--eeeEEEEEEec-------CCeEEeec---ceEEecCCCeEEE
Q psy12131          3 EIELLYNRESLDLDRVTLKL-AGLYQCIASNNIGES--TSKNFIVNVIY-------PPEVSVEK---QWIHTAPDMRAEI   69 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d-~G~Y~C~~~~~~~~~--~~~~~~l~v~~-------~p~~~~~~---~~~~~~~g~~~~l   69 (245)
                      ++.+.. +..|.|.+++..| .|.|+|.+.|..+..  ....+.|.|..       +|.+....   ....+..|+.+.|
T Consensus       164 ~~~~~~-~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l  242 (404)
T 3p3y_A          164 RVSQGH-NGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLL  242 (404)
T ss_dssp             SEEECT-TSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEE
T ss_pred             cEEEcC-CCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEE
Confidence            344433 3459999999999 599999999987753  22335566653       23332221   2355778999999


Q ss_pred             EEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCcccc-
Q psy12131         70 ICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQK-  148 (245)
Q Consensus        70 ~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~-  148 (245)
                      .|.+.+.|.+.+.|++++..+..... ...  .....|.|.++..+|.|.|+|.+.|..|.....+.+.+...|..... 
T Consensus       243 ~C~~~g~p~~~v~W~~~~~~~~~~~~-~~~--~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~  319 (404)
T 3p3y_A          243 ECIASGVPTPDIAWYKKGGDLPSDKA-KFE--NFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEP  319 (404)
T ss_dssp             ECCBCCSSCCEEEEEETTBCCCTTTE-EEE--GGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECC
T ss_pred             EEEECCCCCCcEEEEECCEECCCCcc-ccc--ccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccC
Confidence            99999999999999999988765543 221  23458999999999999999999999998888777776533322111 


Q ss_pred             -CccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecC
Q psy12131        149 -SSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF  227 (245)
Q Consensus       149 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~  227 (245)
                       ......++.+.|.|.+.+.++. .+ .|+++..      .+...... .........+.|.++...+.+.|+|.|.|..
T Consensus       320 ~~~~v~~g~~~~l~C~~~g~p~p-~v-~W~~~g~------~~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  390 (404)
T 3p3y_A          320 KNLILAPGEDGRLVCRANGNPKP-TV-QWMVNGE------PLQSAPPN-PNREVAGDTIIFRDTQISSRAVYQCNTSNEH  390 (404)
T ss_dssp             CCEEECTTCCEEEECEEEEESCC-EE-EEEETTE------EGGGSCCC-TTEEEETTEEEESSCCSSCCCEEEEEEEETT
T ss_pred             CcceeecCCcEEEEEEccccCCC-ce-EEEECCE------ecCCCCCC-ceEEecCCEEEEeecCHHHCEEEEEEEEeCC
Confidence             1234568899999999766443 22 3444432      00000000 0000111468899999888999999999999


Q ss_pred             CCCCCCcceEEe
Q psy12131        228 GWSRPSKAYVFA  239 (245)
Q Consensus       228 G~~~~s~~~~~~  239 (245)
                      |....+..+.+.
T Consensus       391 G~~~~~~~l~V~  402 (404)
T 3p3y_A          391 GYLLANAFVSVL  402 (404)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             CcEEEEEEEEEE
Confidence            988766665553

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.90  E-value=5.4e-23  Score=144.64  Aligned_cols=124  Identities=15%  Similarity=0.158  Sum_probs=100.2

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTA   89 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~   89 (245)
                      ...|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..||.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..
T Consensus        68 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~  146 (203)
T 4fa8_A           68 TFFLVVTAANISHDGNYLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV  146 (203)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC---
T ss_pred             EEEEEEccCCHHHCeEEEEEEEcCCCc-EEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCee
Confidence            456999999999999999999998877 6788999999999888888777888999999999999999999999886543


Q ss_pred             ec----cCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEE
Q psy12131         90 IT----LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF  134 (245)
Q Consensus        90 ~~----~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  134 (245)
                      +.    ...++.+..++.-..+.+.++..+|.|.|+|.|.|..|.....
T Consensus       147 ~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v  195 (203)
T 4fa8_A          147 EPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV  195 (203)
T ss_dssp             ---------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred             ecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence            32    2334455445544566778899999999999999999987764

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.90  E-value=5e-22  Score=139.04  Aligned_cols=134  Identities=22%  Similarity=0.297  Sum_probs=114.8

Q ss_pred             EEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe---cCCeEEeecceEEecCCCeEEEEEEEeecCCCeE
Q psy12131          5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI---YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKV   81 (245)
Q Consensus         5 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~   81 (245)
                      ....+...|.|.+++.+|+|.|+|.+.+..+. ....+.|.|.   .+|.+...+....+..|+.+.|.|.+.+.|.|.+
T Consensus        57 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~-~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v  135 (194)
T 2a38_A           57 SFSDGRAKLTIPAVTKANSGRYSLKATNGSGQ-ATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVV  135 (194)
T ss_dssp             EEETTEEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEE
T ss_pred             EeCCCEEEEEECCCCcccCEEEEEEEEcCCce-EeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeE
Confidence            34444567999999999999999999998776 5667778887   5677766676777889999999999999999999


Q ss_pred             EEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         82 EWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        82 ~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      .|++++..+....++.+...+....|.|.++..+|.|.|+|.+.|..|.....+.|.+
T Consensus       136 ~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          136 KFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             EEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            9999999998877777777777778999999999999999999999999888877765

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.90  E-value=3.5e-22  Score=155.87  Aligned_cols=203  Identities=10%  Similarity=-0.002  Sum_probs=123.2

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEec
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAIT   91 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~   91 (245)
                      +|.|.+++.+|+|.|+|.|.|..|. ....+.|.|..+|.+..... .....|..+.|.|.+.|.|.|.+.|++++....
T Consensus       104 sL~I~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~p~~~~~~p-~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~  181 (423)
T 3qs7_E          104 SMVILKMTETQAGEYLLFIQSEATN-YTILFTVSIRNTLLYTLRRP-YFRKMENQDALVCISESVPEPIVEWVLCDSQGE  181 (423)
T ss_dssp             EEEESSCCSSSCSEEEEEEEC--CE-EEEEEEEEEC-----CEEEE-EEEECSSSSCEEEEEEESSCCEEEEEEC-----
T ss_pred             EEEEeecCcccCEEEEEEEEcCCCc-EEEEEEEEEecCccccccCC-cEeccCCceEEEEEEeeecCCeEEEEECCCCCc
Confidence            5999999999999999999999887 67788899987776532222 234567788899999999999999999876543


Q ss_pred             cCCc---EEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE-EEEEEecCCCCccccCccccCCCeeEEEEEeCCC
Q psy12131         92 LGGR---IDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTY  167 (245)
Q Consensus        92 ~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~  167 (245)
                      ....   ..+...  ...     +...|.|.|.|.|.|..|.... .+.+.+...|...........++.+.|.|.+.+.
T Consensus       182 ~~~~~~~~~~~~~--~~~-----l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~~~~~~v~~G~~v~L~C~~~g~  254 (423)
T 3qs7_E          182 SCKEESPAVVKKE--EKV-----LHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHV  254 (423)
T ss_dssp             --------CEEEC--CSE-----ECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCSSTTEEEEETTSCEEEEEEEEES
T ss_pred             ccccccccccccc--ceE-----EecccCeEEEEEEEcCCCCcceeeEEEEEecCCccCCCceEEeCCCeEEEEEEEEcC
Confidence            2110   001000  011     1567999999999999987654 3566665443332223345779999999999763


Q ss_pred             CCceEEEEEEEeec-C-CCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEec
Q psy12131        168 SGIIQYLLKFRERE-E-LTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNR  226 (245)
Q Consensus       168 ~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~  226 (245)
                      .|...+ .|+++.. . .............  ........+.|.++...+.+.|+|.|.|.
T Consensus       255 ~p~p~i-~W~k~g~~l~~~~~~~~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~  312 (423)
T 3qs7_E          255 NHGFGL-TWELENKALEEGNYFEMSTYSTN--RTMIRILFAFVSSVARNDTGYYTCSSSKH  312 (423)
T ss_dssp             SSCCCE-EEEESSSBCCGGGEEEEEEEETT--TEEEEEEEEEESSCCTTTCEEEEEEETTE
T ss_pred             CCCcEE-EEEECCEEccccceeecccccCC--ceeEEEEEEEEeecCHHHCEEEEEEEecC
Confidence            222122 2444433 1 1101100000000  00112246899999999999999999998

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.90  E-value=5.6e-23  Score=156.16  Aligned_cols=224  Identities=12%  Similarity=0.066  Sum_probs=150.2

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEE--eecceEEecCCCeEEEEEE-----EeecCCCe
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS--VEKQWIHTAPDMRAEIICN-----VYANPPAK   80 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~~~~g~~~~l~C~-----~~~~~~~~   80 (245)
                      ..+..|.|.+++.+|+|.|+|.+.|..|. ....+.|.|..+|...  .......+..|+.+.|.|.     +.+.|.+.
T Consensus        78 ~~~~~L~i~~v~~~D~G~Y~C~~~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~  156 (339)
T 3o4o_C           78 AQDGALWLLPALQEDSGTYVCTTRNASYC-DKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVK  156 (339)
T ss_dssp             EETTEEEESSBCTTCCEEEECCEEETTEE-EEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCC
T ss_pred             eeCCeEEECCCCcccCEEEEEEEECCcce-EEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCce
Confidence            34567999999999999999999998775 6788888988766532  1122346779999999999     78888999


Q ss_pred             EEEEECCEEeccC-CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc----eeEEEEEEEecCC----CCccccC--
Q psy12131         81 VEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG----SSQQFIQLSGIPN----IPVFQKS--  149 (245)
Q Consensus        81 ~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g----~~~~~~~~~~~~~----~p~~~~~--  149 (245)
                      +.|++++..+... .++.+.  .....|.|.++...|.|.|+|.+.|..|    .....+.+.+...    +|.+...  
T Consensus       157 v~W~k~g~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~  234 (339)
T 3o4o_C          157 IQWYKDSLLLDKDNEKFLSV--RGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLK  234 (339)
T ss_dssp             BCCEESSCBCCTTCSSEEEC--TTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSC
T ss_pred             EEEecCCeeCCCCCceeEEc--CCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCc
Confidence            9999999887655 333332  2235899999999999999999999876    3445555655422    3433332  


Q ss_pred             -ccccCCCeeEEEEEe---CCCCCceEEEEEEEeecC-C-----CCeEE---EeeCCCCCCCcceeeeEEEecCCCCCce
Q psy12131        150 -SRRLGPDGYRLVWQV---DTYSGIIQYLLKFREREE-L-----TPWRN---IVIPSDGSLAGPIYTQSYNITGLQLFTQ  216 (245)
Q Consensus       150 -~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~-~-----~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~~~~  216 (245)
                       .....++.+.|.|.+   .+.++... ..|+++... .     .....   ......   ........+.|.++...+.
T Consensus       235 ~~~v~~G~~v~L~C~~~~~~g~P~~~~-v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~L~i~~v~~~d~  310 (339)
T 3o4o_C          235 TISASLGSRLTIPCKVFLGTGTPLTTM-LWWTANDTHIESAYPGGRVTEGPRQEYSEN---NENYIEVPLIFDPVTREDL  310 (339)
T ss_dssp             CCCCCCCSCCCCCCCEEESSSCCSSCE-EEEESSSSCSSSSSCSSSCEECCCEECCCS---SSCEEEECCEECSSCCCSC
T ss_pred             eeEeccCCCEEEEEEEECCCCCCCCce-EEEEECCeecccccccccceecceEEeccc---CceEEEEEEEEEEechhhc
Confidence             234668899999999   66652322 223333220 0     00110   001101   0111122688888888886


Q ss_pred             -EEEEEEEEecCCCCCCCcceEE
Q psy12131        217 -YEASVLAKNRFGWSRPSKAYVF  238 (245)
Q Consensus       217 -y~~~v~a~N~~G~~~~s~~~~~  238 (245)
                       +.|+|.|.|.+|.......+.+
T Consensus       311 ~G~Y~C~a~N~~G~~~~~~~~~~  333 (339)
T 3o4o_C          311 HMDFKCVVHNTLSFQTLRTTVKE  333 (339)
T ss_dssp             CCCCEEEEEETTEEECCBCCCCC
T ss_pred             CccEEEEEEeccCceEEEEEhhH
Confidence             7778889999998776655443

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.90  E-value=9.5e-23  Score=157.61  Aligned_cols=212  Identities=12%  Similarity=0.138  Sum_probs=143.6

Q ss_pred             ceEEEeecceEEEeccCCCCC-EEEEEEEEcCCCCcee---eEEEEEEecCC-----eEEe-ecceEEecCCCeEEEEEE
Q psy12131          3 EIELLYNRESLDLDRVTLKLA-GLYQCIASNNIGESTS---KNFIVNVIYPP-----EVSV-EKQWIHTAPDMRAEIICN   72 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~~~~~~~~~---~~~~l~v~~~p-----~~~~-~~~~~~~~~g~~~~l~C~   72 (245)
                      |+.+..+ ..|.|.+++.+|+ |.|+|.+.+..+....   ....|.|..++     .+.. ......+..|+.+.|.|.
T Consensus       157 ~~~~~~~-~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~  235 (388)
T 2v5m_A          157 KYLVLPS-GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCP  235 (388)
T ss_dssp             TEEECTT-SCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCC
T ss_pred             cEEEccC-CcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEE
Confidence            4444433 4699999999999 9999999987644221   12345665542     2111 122345678999999999


Q ss_pred             EeecCCCeEEEEECCEE------eccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCcc
Q psy12131         73 VYANPPAKVEWFRDGTA------ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVF  146 (245)
Q Consensus        73 ~~~~~~~~~~w~~~~~~------~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~  146 (245)
                      +.|.|.|.+.|++++..      +....++..    ....|.|.++..+|.|.|+|.+.|..|.....+.|.+...|...
T Consensus       236 ~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~  311 (388)
T 2v5m_A          236 AQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQ----VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK  311 (388)
T ss_dssp             CEEESCCEEEEEEECTTSSCEEECCCSSSEEE----ETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEecCCCCcccccccccCceec----ccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccc
Confidence            99999999999996432      222223222    23479999999999999999999999987777776665322211


Q ss_pred             c--cCccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEE
Q psy12131        147 Q--KSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAK  224 (245)
Q Consensus       147 ~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~  224 (245)
                      .  .......++.+.|.|.+.+.++. .+ .|+++..        .+....        ..+.|.++...+.+.|+|.|.
T Consensus       312 ~~~~~~~v~~g~~~~l~C~~~g~p~p-~i-~W~~~g~--------~i~~~~--------~~L~i~~v~~~d~G~Y~C~a~  373 (388)
T 2v5m_A          312 IDPPTQTVDFGRPAVFTCQYTGNPIK-TV-SWMKDGK--------AIGHSE--------SVLRIESVKKEDKGMYQCFVR  373 (388)
T ss_dssp             EESSEEEECTTSCEEEEEEEEEECCC-EE-EEEETTE--------ECSCCS--------SEEEESSCCGGGCEEEEEEEE
T ss_pred             cCCCcEEecCCCCEEEEEEeccccCC-eE-EEEECCE--------ECccCC--------CEEEEecCChhhCEEEEEEEE
Confidence            1  11234678899999999766443 22 3444432        011111        568899999999999999999


Q ss_pred             ecCCCCCCCcceE
Q psy12131        225 NRFGWSRPSKAYV  237 (245)
Q Consensus       225 N~~G~~~~s~~~~  237 (245)
                      |..|....+..+.
T Consensus       374 N~~G~~~~~~~l~  386 (388)
T 2v5m_A          374 NDRESAEASAELK  386 (388)
T ss_dssp             CSSCEEEEEEEEE
T ss_pred             cCCCcEEEEEEEE
Confidence            9999876665554

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.90  E-value=2.7e-22  Score=151.69  Aligned_cols=215  Identities=13%  Similarity=0.141  Sum_probs=127.7

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCc----eeeEEEEEEecCCeEE-eecceEEecCCCeEEEEEEEeecCCC--eE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGES----TSKNFIVNVIYPPEVS-VEKQWIHTAPDMRAEIICNVYANPPA--KV   81 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~~~~--~~   81 (245)
                      +...|.|.+++.+|+|.|+|.+.|..+..    ....+.|.|..+|... .......+..|+.+.|.|.+.+.|++  .+
T Consensus        72 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v  151 (327)
T 2wng_A           72 MDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITL  151 (327)
T ss_dssp             CBCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEE
T ss_pred             ceeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEE
Confidence            34569999999999999999999976541    1245678887655421 11223456789999999999988776  89


Q ss_pred             EEEECCEEeccCCcEEEEe-c-C---ceeEEEEccCCCCCCeEEEEEEEeCCcee---EEEEEEEe-cCCCCccccC-cc
Q psy12131         82 EWFRDGTAITLGGRIDMHV-S-S---EKHSLLVRHIKDTDFGNYMCQASNNLGSS---QQFIQLSG-IPNIPVFQKS-SR  151 (245)
Q Consensus        82 ~w~~~~~~~~~~~~~~~~~-~-~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~---~~~~~~~~-~~~~p~~~~~-~~  151 (245)
                      .|++++..+.......... . +   ..+.|.|.....++.|.|+|.+.|..+..   .....+.+ ...+|.+... ..
T Consensus       152 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~  231 (327)
T 2wng_A          152 KWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP  231 (327)
T ss_dssp             EEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC
T ss_pred             EEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC
Confidence            9999998876432211111 0 0   12357777667667899999999987652   23333322 2334443322 22


Q ss_pred             ccCCCeeEEEEEeCCC-CCceEEEEEEEeecCCCCeEE-----EeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEe
Q psy12131        152 RLGPDGYRLVWQVDTY-SGIIQYLLKFREREELTPWRN-----IVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKN  225 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N  225 (245)
                      ...++.+.|.|.+.+. ++...+ .|+++..   ....     .......   .-.....+.|..+...+.+.|.|.|.|
T Consensus       232 ~~~G~~v~l~C~~~g~~p~~~~v-~W~k~g~---~l~~~~~~~~~~~~~g---~~~~~~~L~i~~~~~~d~G~Y~C~a~N  304 (327)
T 2wng_A          232 VRAENQVNVTCQVRKFYPQRLQL-TWLENGN---VSRTETASTVTENKDG---TYNWMSWLLVNVSAHRDDVKLTCQVEH  304 (327)
T ss_dssp             CSSTTCCEEEEEEEEEBSSCEEE-EEEETTE---EEEEEECCSCEECTTS---CEEEEEEEEC-------CCEEEEEEEE
T ss_pred             cCCCCcEEEEEEEccccCCCcEE-EEEECCe---EccCcccCceEECCCC---cEEEEEEEEEccccccCCCEEEEEEEe
Confidence            4678899999999764 332223 3554432   1110     0011110   000113466777766677777777999


Q ss_pred             cCCCC
Q psy12131        226 RFGWS  230 (245)
Q Consensus       226 ~~G~~  230 (245)
                      ..|..
T Consensus       305 ~~~~~  309 (327)
T 2wng_A          305 DGQPA  309 (327)
T ss_dssp             TTCCC
T ss_pred             CCCCC
Confidence            98754

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.89  E-value=4.3e-21  Score=150.64  Aligned_cols=227  Identities=14%  Similarity=0.110  Sum_probs=140.6

Q ss_pred             cceEEEee--cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec---CCeEEeecceEEecCCCeEEEEEEEee-
Q psy12131          2 KEIELLYN--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYA-   75 (245)
Q Consensus         2 ~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~-   75 (245)
                      +|+.+...  ..+|.|.+++.+|+|.|+|.|.+..+......+.|.|..   +|.+...+.......|+.+.|.|.+.+ 
T Consensus        64 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~  143 (438)
T 1qgc_4           64 DRFSGSGSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNF  143 (438)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE
T ss_pred             CcEEEEccCCcEEEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccc
Confidence            35555433  346999999999999999999998764334556667753   666655433333345789999999987 


Q ss_pred             cCCC-eEEEEECCEEeccCCcEEE--Eec--C---ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCccc
Q psy12131         76 NPPA-KVEWFRDGTAITLGGRIDM--HVS--S---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQ  147 (245)
Q Consensus        76 ~~~~-~~~w~~~~~~~~~~~~~~~--~~~--~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~  147 (245)
                      .|.+ .+.|++++..+........  ...  +   ..+.|.|..+..+|.|.|+|.+.|..+.......+.....++...
T Consensus       144 ~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~  223 (438)
T 1qgc_4          144 YPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVMLV  223 (438)
T ss_dssp             BSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEEE
T ss_pred             cCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccceeEEe
Confidence            6667 8999999988765411111  101  1   135799999999999999999999887754444444322222111


Q ss_pred             --cCccccCCCeeEEEEEeCCCCCceEEEEEEEeec-CCCCeEEEeeC-----------CCCCC---CcceeeeEEEecC
Q psy12131        148 --KSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE-ELTPWRNIVIP-----------SDGSL---AGPIYTQSYNITG  210 (245)
Q Consensus       148 --~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----------~~~~~---~~~~~~~~~~i~~  210 (245)
                        .......++.+.|.|.+.+.+.......|+++.. ....+......           .....   ........+.|.+
T Consensus       224 ~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~  303 (438)
T 1qgc_4          224 ESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSS  303 (438)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECC
Confidence              1233567899999999976541111123555421 00001000000           00000   0001125789999


Q ss_pred             CCCCceEEEEEEEEecCC
Q psy12131        211 LQLFTQYEASVLAKNRFG  228 (245)
Q Consensus       211 l~~~~~y~~~v~a~N~~G  228 (245)
                      +...+.+.|.|.|.|..|
T Consensus       304 v~~~D~G~Y~C~a~n~~~  321 (438)
T 1qgc_4          304 LRSADTAMYYCVRREDGG  321 (438)
T ss_dssp             CCGGGCCEEEEEECCSSS
T ss_pred             CChhhCEEEEEEEEccCC
Confidence            999999999999999655

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.89  E-value=2.8e-21  Score=134.89  Aligned_cols=128  Identities=19%  Similarity=0.315  Sum_probs=111.9

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEE--CC
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DG   87 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~   87 (245)
                      +..|.|.+++.+|+|.|+|.+.+. +. .+..+.|.|..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++  ++
T Consensus        55 ~~~L~i~~~~~~d~G~Y~C~~~n~-~~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g  132 (190)
T 2wv3_A           55 NMEYRINKPRAEDSGEYHCVYHFV-SA-PKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENG  132 (190)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEET-TE-EEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETT
T ss_pred             cEEEEEecCCcccCEEEEEEEEeC-Cc-ccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCC
Confidence            356999999999999999999998 65 788899999999999888877888999999999999999999999999  77


Q ss_pred             EEec---cCCcEEEEecCceeEEEEccCC-CCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         88 TAIT---LGGRIDMHVSSEKHSLLVRHIK-DTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        88 ~~~~---~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      ..+.   ...++.+...+....|.|.++. .+|.|.|+|.+.|..|.....+.|.+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  188 (190)
T 2wv3_A          133 VFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV  188 (190)
T ss_dssp             EEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEE
Confidence            7664   4456677666667789999999 79999999999999999888777665

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.89  E-value=1.3e-22  Score=158.19  Aligned_cols=210  Identities=13%  Similarity=0.099  Sum_probs=131.4

Q ss_pred             CCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEee-cCCCeEEEEECCEEeccCCcEE
Q psy12131         19 TLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRID   97 (245)
Q Consensus        19 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~   97 (245)
                      +..|+|.|+|.|.|..|......+.|.|..+|.+  .+....+.+|+.+.|.|.+.| .|.|.+.|++++..+.....+.
T Consensus       199 ~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~  276 (423)
T 3qs7_E          199 HELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFE  276 (423)
T ss_dssp             CCCCSSCEEEEEECSSCEEEEECEEEESSSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEE
T ss_pred             ecccCeEEEEEEEcCCCCcceeeEEEEEecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceee
Confidence            6789999999999998875455577887776664  444667889999999999998 6678999999988765432221


Q ss_pred             E--Ee----cCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCccc----cCccccCCCeeEEEEEeCCC
Q psy12131         98 M--HV----SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQ----KSSRRLGPDGYRLVWQVDTY  167 (245)
Q Consensus        98 ~--~~----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~----~~~~~~~~~~~~l~~~~~~~  167 (245)
                      .  ..    ......|.|.++..+|.|.|+|.|.|.   ....+.|.+...|....    ....+..|+.+.|.|.+.+.
T Consensus       277 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~  353 (423)
T 3qs7_E          277 MSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAY  353 (423)
T ss_dssp             EEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEE
T ss_pred             cccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEc
Confidence            1  10    112347999999999999999999998   44445555443332211    11234678899999999776


Q ss_pred             CCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCCCCC
Q psy12131        168 SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGAET  245 (245)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~~~~  245 (245)
                      ++. .+ .|+++..      .+..... .....   ..+........+.+.|+|.|.|..|....+..+.+...++++
T Consensus       354 P~p-~i-~W~k~g~------~l~~~~~-~~~~~---~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~~  419 (423)
T 3qs7_E          354 PQI-RC-TWTFSRK------SFPCEQK-GLDNG---YSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHH  419 (423)
T ss_dssp             SCC-EE-EEEETTE------EEECBCC-BCSSS---SEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--------
T ss_pred             CCC-eE-EEEECCE------ECCCccc-cccCC---cEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCccc
Confidence            543 22 3444432      1111000 00000   112113344455556666699999998888888888877654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.89  E-value=1.1e-21  Score=145.31  Aligned_cols=133  Identities=22%  Similarity=0.402  Sum_probs=118.9

Q ss_pred             EeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEEC
Q psy12131          7 LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD   86 (245)
Q Consensus         7 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~   86 (245)
                      ..+...|.|.+++.+|+|.|+|.+.|..|. ....+.|.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++
T Consensus       151 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~  229 (284)
T 2rik_A          151 VESVAVLEMYNLSVEDSGDYTCEAHNAAGS-ASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKD  229 (284)
T ss_dssp             ETTEEEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEET
T ss_pred             cCCEEEEEECCCCcccCEEEEEEEEcCCCc-eeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEEC
Confidence            344567999999999999999999999887 6788999999999988877777889999999999999999999999999


Q ss_pred             CEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131         87 GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      +..+....++.+...+....|.|.++..+|.|.|+|.|.|..|.....+.|.+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          230 KRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             TEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            999988888887777777899999999999999999999999998888877654

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.89  E-value=7.3e-22  Score=137.95  Aligned_cols=136  Identities=24%  Similarity=0.420  Sum_probs=114.6

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeE
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKV   81 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~   81 (245)
                      .|+.+..++..|.|.+++.+|+|.|+|.+.+..|......+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+
T Consensus        53 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v  132 (192)
T 2iep_A           53 TRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSV  132 (192)
T ss_dssp             TTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEE
T ss_pred             ccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceE
Confidence            46777777788999999999999999999998877566778889999999888777778889999999999999999999


Q ss_pred             EEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeE-EEEEEEec
Q psy12131         82 EWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQLSGI  140 (245)
Q Consensus        82 ~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~~~~~~  140 (245)
                      .|++++..+....++.+...   ..|.|.++..+|.|.|+|.+.|..|... ..+.|.+.
T Consensus       133 ~W~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  189 (192)
T 2iep_A          133 SWIKGDSALRENSRIAVLES---GSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE  189 (192)
T ss_dssp             EEEETTEECCCCSSEEECTT---SCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEeCCEEccCCCcEEEecC---CcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEE
Confidence            99999998887666554333   3799999999999999999999998763 34555443

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.89  E-value=2e-22  Score=161.15  Aligned_cols=209  Identities=13%  Similarity=0.092  Sum_probs=140.4

Q ss_pred             eccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEe-ecCCCeEEEEECCEEeccCC
Q psy12131         16 DRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGG   94 (245)
Q Consensus        16 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~w~~~~~~~~~~~   94 (245)
                      ..++..|+|.|+|.|.|..|......+.|.|..+|.+  .+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....
T Consensus       196 ~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~  273 (527)
T 3qs9_E          196 KVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGN  273 (527)
T ss_dssp             SEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGG
T ss_pred             eeccccCCEEEEEEEEeCCCcccceEEEEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCc
Confidence            3456889999999999998875455588888877775  55567788999999999996 88999999999988765543


Q ss_pred             cEEEEe------cCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCcccc----CccccCCCeeEEEEEe
Q psy12131         95 RIDMHV------SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQK----SSRRLGPDGYRLVWQV  164 (245)
Q Consensus        95 ~~~~~~------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~l~~~~  164 (245)
                      .+....      ......|.|.++..+|.|.|+|.|.|.   ....+.|.+...|.....    ......++.+.|.|.+
T Consensus       274 ~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~  350 (527)
T 3qs9_E          274 YFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRF  350 (527)
T ss_dssp             EEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEE
T ss_pred             eeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEE
Confidence            322110      012346999999999999999999998   444555555433321111    1234668899999999


Q ss_pred             CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecC
Q psy12131        165 DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE  241 (245)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~  241 (245)
                      .+.++..  ..|+++..      .+.......    .....+.|.++...+.+.|+|.|.|..|....+..+.+..+
T Consensus       351 ~g~P~p~--i~W~k~g~------~l~~~~~~~----~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~  415 (527)
T 3qs9_E          351 KAYPQIR--CTWTFSRK------SFPCEQKGL----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRK  415 (527)
T ss_dssp             EEESCCE--EEEEETTE------EEECBCCBC----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CC
T ss_pred             EecCCCE--EEEEECCE------ECcCCcccc----cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecC
Confidence            7765432  23454432      010000000    01145778888888888888889999997766555555533

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.89  E-value=1.8e-21  Score=136.53  Aligned_cols=128  Identities=23%  Similarity=0.301  Sum_probs=111.0

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeec-----ceEEecCCCeEEEEEEEeecCCCeEEEEEC
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-----QWIHTAPDMRAEIICNVYANPPAKVEWFRD   86 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~-----~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~   86 (245)
                      .|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|..+|.+..++     ....+..|+.+.|.|.+.+.|.|.+.|+++
T Consensus        63 ~L~i~~~~~~d~G~Y~C~~~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~  141 (197)
T 2j8h_A           63 QLIIASVTDDDATVYQVRATNQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKG  141 (197)
T ss_dssp             EEEECSCCGGGCSEEEEEEEETTEE-EEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEES
T ss_pred             EEEECcCCHHhCEEEEEEEEECCCc-eeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEEC
Confidence            7999999999999999999998776 6888889998877764432     345678899999999999999999999999


Q ss_pred             CEEeccCCcEEEEecCceeEEEEcc-CCCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131         87 GTAITLGGRIDMHVSSEKHSLLVRH-IKDTDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      +..+....++.+........|.|.+ +...|.|.|+|.+.|..|.....+.|.+.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          142 QDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             SCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            9988877777777666778999999 99999999999999999998888877653

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.88  E-value=3.5e-22  Score=153.17  Aligned_cols=195  Identities=10%  Similarity=0.015  Sum_probs=136.9

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEee-----cCCCeEE
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA-----NPPAKVE   82 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-----~~~~~~~   82 (245)
                      .....|.|.+++.+|+|.|+|.|.+..+. ....+.|.|..+|...   ....+.+|+.+.|.|.+.+     .|.|.+.
T Consensus       139 ~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~-~~~~~~l~v~~~p~~~---~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~  214 (363)
T 1wio_A          139 QGGKTLSVSQLELQDSGTWTCTVLQNQKK-VEFKIDIVVLAFQKAS---SIVYKKEGEQVEFSFPLAFTVEKLTGSGELW  214 (363)
T ss_dssp             EESSEEEECSBCGGGCEECEEEEEETTEE-EEECCEECEECCSCSE---EEEEEETBCCEEEECCCCCCCCSSCEEEEEE
T ss_pred             ccceEEEEeeCChhcCCEEEEEEecCCCe-EEEEEEEEEecCCCCC---CceEEecCCEEEEEEEEecccccCCCceeEE
Confidence            35677999999999999999999987544 5666777777666543   4556788999999998877     6788999


Q ss_pred             EEECCEEecc--------CCcEEEEe----------cCceeEEEEccCCCCCCeEEEEEEEeC--CceeEEEEEEEecCC
Q psy12131         83 WFRDGTAITL--------GGRIDMHV----------SSEKHSLLVRHIKDTDFGNYMCQASNN--LGSSQQFIQLSGIPN  142 (245)
Q Consensus        83 w~~~~~~~~~--------~~~~~~~~----------~~~~~~l~i~~~~~~d~g~y~C~~~n~--~g~~~~~~~~~~~~~  142 (245)
                      |++++..+..        ...+.+..          ......|.|.++...|.|.|+|.|.|.  .|.....+.|.+.  
T Consensus       215 W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~--  292 (363)
T 1wio_A          215 WQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVM--  292 (363)
T ss_dssp             EEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEE--
T ss_pred             EecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEE--
Confidence            9999877655        34444322          222458999999999999999999999  8888777777765  


Q ss_pred             CCccccCccccCCCeeEEEEEeCCCC-CceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEE
Q psy12131        143 IPVFQKSSRRLGPDGYRLVWQVDTYS-GIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASV  221 (245)
Q Consensus       143 ~p~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v  221 (245)
                               ...+..+.|.|.+.+.+ |...+ .|+++.. ... .      .         ..+.|..+...+.+.|+|
T Consensus       293 ---------~v~g~~~~l~C~~~g~p~p~~~i-~W~~~~~-~~~-~------~---------~~l~i~~v~~~d~G~Y~C  345 (363)
T 1wio_A          293 ---------RATQLQKNLTCEVWGPTSPKLML-SLKLENK-EAK-V------S---------KREKAVWVLNPEAGMWQC  345 (363)
T ss_dssp             ---------EECCCSSSEEEEEESSCCTTCCE-EEECSSS-SCS-E------E---------ESSSEEEESSCCSEEEEE
T ss_pred             ---------EecCCCeeEEEEEccccCCCccE-EEEeCCC-cee-e------e---------eeeeeeeeccccceeEEE
Confidence                     12277899999996664 33222 3444432 111 0      0         223455666777777788


Q ss_pred             EEEecCCCCCCCcce
Q psy12131        222 LAKNRFGWSRPSKAY  236 (245)
Q Consensus       222 ~a~N~~G~~~~s~~~  236 (245)
                      .|.|. |....+..+
T Consensus       346 ~a~~~-~~~~~~~~~  359 (363)
T 1wio_A          346 LLSDS-GQVLLESNI  359 (363)
T ss_dssp             EECSS-SSCCEEEEE
T ss_pred             EEecC-CeEEEecce
Confidence            89975 443333333

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.88  E-value=6.8e-21  Score=135.08  Aligned_cols=138  Identities=15%  Similarity=0.220  Sum_probs=110.7

Q ss_pred             cceEEEeec--ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec--------------------CCeEE-eecce
Q psy12131          2 KEIELLYNR--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY--------------------PPEVS-VEKQW   58 (245)
Q Consensus         2 ~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--------------------~p~~~-~~~~~   58 (245)
                      +|+.+...+  ..|.|.+++.+|+|.|+|.+.+..+. ....+.|.|..                    .|.+. ..+..
T Consensus        48 ~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  126 (212)
T 2r15_A           48 DRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG-HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDV  126 (212)
T ss_dssp             SSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSE
T ss_pred             CeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcc-eEEEEEEEEeeccchhhhccccCcccccccCCCcccccCCCc
Confidence            345554444  34999999999999999999997766 45666665542                    33333 33556


Q ss_pred             EEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEec-CceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12131         59 IHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL  137 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~  137 (245)
                      ..+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+... +....|.|.++..+|.|.|+|.+.|..|.....+.|
T Consensus       127 ~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l  206 (212)
T 2r15_A          127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV  206 (212)
T ss_dssp             EEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEE
Confidence            7788999999999999999999999999999988777776554 556799999999999999999999999998888877


Q ss_pred             Eec
Q psy12131        138 SGI  140 (245)
Q Consensus       138 ~~~  140 (245)
                      .+.
T Consensus       207 ~V~  209 (212)
T 2r15_A          207 SVF  209 (212)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.88  E-value=1.8e-21  Score=153.40  Aligned_cols=214  Identities=12%  Similarity=0.094  Sum_probs=141.7

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEe-ecceEEecCCCeEEEEEEEeecCCC---eEEEEECC
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV-EKQWIHTAPDMRAEIICNVYANPPA---KVEWFRDG   87 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~---~~~w~~~~   87 (245)
                      .|.|.+++. |+| |+|.|.+..+. .+..+.|.|..+|.+.. .+....+.+|+.+.|.|.+.+.+++   .+.|++++
T Consensus        51 ~l~i~~v~~-d~g-Y~C~a~~~~~~-~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g  127 (450)
T 1z7z_I           51 VYELSNVQE-DSQ-PMCYSNCPDGQ-STAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE  127 (450)
T ss_dssp             EEEEEEECS-CBC-CEEEEEETTEE-EEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETT
T ss_pred             EEEEEeccc-CCe-eEEEEeCCCCc-ceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCC
Confidence            599999987 999 99999765443 67788889988887763 4455678899999999999998888   99999999


Q ss_pred             EEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeE--------EEEEEEe--c-CCCCccccCccccCCC
Q psy12131         88 TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ--------QFIQLSG--I-PNIPVFQKSSRRLGPD  156 (245)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~--------~~~~~~~--~-~~~p~~~~~~~~~~~~  156 (245)
                      ..+......   .......|.|..+..+|.|.|+|.+.|..|...        ....+.+  . ..+|.+........++
T Consensus       128 ~~l~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~  204 (450)
T 1z7z_I          128 KELKREPAV---GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDT  204 (450)
T ss_dssp             EEEEEEECC---TTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTS
T ss_pred             EEeeccccc---ccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCC
Confidence            877643211   122345899999999999999999999876422        1222222  2 2344443334567899


Q ss_pred             eeEEEEEeCCCCC--ceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCc--eEEEEEEEEecCCCCCC
Q psy12131        157 GYRLVWQVDTYSG--IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFT--QYEASVLAKNRFGWSRP  232 (245)
Q Consensus       157 ~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~--~y~~~v~a~N~~G~~~~  232 (245)
                      .+.|.|.+.+..|  ...+. |+++...-..  .+......      ....+.+ .+...+  .|.|+|.|.|..|....
T Consensus       205 ~v~l~C~~~g~~P~~~~~~~-W~~~~~~~~~--~~~~~~~~------~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~  274 (450)
T 1z7z_I          205 QGTVVCSLDGLFPVSEAQVH-LALGDQRLNP--TVTYGNDS------FSAKASV-SVTAEDEGTQRLTCAVILGNQSQET  274 (450)
T ss_dssp             EEEEEEEEESCTTGGGCEEE-EEETTEECCC--EEEEETTE------EEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEE
T ss_pred             cEEEEEEeeCCCCCCceEEE-EeCCCEeCCc--eEEecCCc------eeEEEEE-EeEhhhCCcEEEEEEEccCCccEEE
Confidence            9999999977644  33333 4443321111  11111110      1111122 444555  55999999999988766


Q ss_pred             CcceEEecC
Q psy12131        233 SKAYVFATE  241 (245)
Q Consensus       233 s~~~~~~t~  241 (245)
                      +..+.+...
T Consensus       275 ~~~l~V~~~  283 (450)
T 1z7z_I          275 LQTVTIYSF  283 (450)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecC
Confidence            666666653

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.88  E-value=8.1e-22  Score=153.11  Aligned_cols=222  Identities=18%  Similarity=0.189  Sum_probs=149.6

Q ss_pred             eEEEeecceEEEe----ccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEee-cceEEecCCCeEEEEEEE-eecC
Q psy12131          4 IELLYNRESLDLD----RVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE-KQWIHTAPDMRAEIICNV-YANP   77 (245)
Q Consensus         4 ~~~~~~~~~L~i~----~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~-~~~~   77 (245)
                      +.+...+..|.|.    +++.+|+|.|+|.+.|..|...+..+.|.|..+|.+... .....+.+|+.+.|.|.+ .+.|
T Consensus        66 ~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p  145 (404)
T 3p3y_A           66 VSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLP  145 (404)
T ss_dssp             CBCCSSSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSS
T ss_pred             ceEecCCceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCC
Confidence            3334445557665    889999999999999998875567888999887765433 344678899999999999 7888


Q ss_pred             CCeEEEEECCE-EeccCCcEEEEecCceeEEEEccCCCCC-CeEEEEEEEeCCceeEE---EEEEEec------CCCCcc
Q psy12131         78 PAKVEWFRDGT-AITLGGRIDMHVSSEKHSLLVRHIKDTD-FGNYMCQASNNLGSSQQ---FIQLSGI------PNIPVF  146 (245)
Q Consensus        78 ~~~~~w~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~g~y~C~~~n~~g~~~~---~~~~~~~------~~~p~~  146 (245)
                      .+.+.|++++. .+....+....   ....|.|.++...| .|.|+|.+.|..|....   .+.+.+.      ..+|.+
T Consensus       146 ~~~v~W~~~~~~~~~~~~~~~~~---~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~  222 (404)
T 3p3y_A          146 SPVIFWMSSSMEPITQDKRVSQG---HNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSF  222 (404)
T ss_dssp             CCEEEEECTTSCBCCCCSSEEEC---TTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCB
T ss_pred             CCeEEEeCCCccccCCCCcEEEc---CCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCcc
Confidence            89999999874 33334444332   23479999999999 59999999998775322   2223322      122322


Q ss_pred             ccC------ccccCCCeeEEEEEeCCCCCceEEEEEEEeec-CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEE
Q psy12131        147 QKS------SRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE-ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEA  219 (245)
Q Consensus       147 ~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~  219 (245)
                      ...      .....++.+.|.|.+.+.++. . ..|+++.. ....-..... .         ...+.|.++...+.+.|
T Consensus       223 ~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~-~-v~W~~~~~~~~~~~~~~~~-~---------~~~L~i~~~~~~d~G~Y  290 (404)
T 3p3y_A          223 MYPQGTASSQMVLRGMDLLLECIASGVPTP-D-IAWYKKGGDLPSDKAKFEN-F---------NKALRITNVSEEDSGEY  290 (404)
T ss_dssp             SSSCSSEEEEEEETTSCEEEECCBCCSSCC-E-EEEEETTBCCCTTTEEEEG-G---------GTEEEESSCCGGGCEEE
T ss_pred             ccccCCCCCceEecCCCEEEEEEECCCCCC-c-EEEEECCEECCCCcccccc-c---------CceEEEccCCHhHCEEE
Confidence            221      235678899999999776443 2 33555543 1111111111 1         14688999999999999


Q ss_pred             EEEEEecCCCCCCCcceEEec
Q psy12131        220 SVLAKNRFGWSRPSKAYVFAT  240 (245)
Q Consensus       220 ~v~a~N~~G~~~~s~~~~~~t  240 (245)
                      +|.|.|..|....+..+.+..
T Consensus       291 ~C~a~n~~g~~~~~~~l~V~~  311 (404)
T 3p3y_A          291 FCLASNKMGSIRHTISVRVKA  311 (404)
T ss_dssp             EEEEECSSCEEEEEEEEEEEE
T ss_pred             EEEEEeCCCcEEEEEEEEEeC
Confidence            999999999765555555543

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.88  E-value=4.3e-22  Score=153.93  Aligned_cols=223  Identities=16%  Similarity=0.199  Sum_probs=149.3

Q ss_pred             ecceEEEeccCCCC------CEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCC---C
Q psy12131          9 NRESLDLDRVTLKL------AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP---A   79 (245)
Q Consensus         9 ~~~~L~i~~~~~~d------~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~   79 (245)
                      .+.+|.|.+++.+|      +|.|+|.|.|..|...+..+.|.+..+|.+...+....+.+|+.+.|.|.+.+.+.   +
T Consensus        57 ~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~  136 (388)
T 2v5m_A           57 SDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVE  136 (388)
T ss_dssp             STTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEE
T ss_pred             CCceEEecccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcc
Confidence            45679999999997      99999999998876456778888888888777776778889999999999987654   6


Q ss_pred             eEEEEECCEEecc-----CCcEEEEecCceeEEEEccCCCCCC-eEEEEEEEeCCceeEE------EEEEEec-----CC
Q psy12131         80 KVEWFRDGTAITL-----GGRIDMHVSSEKHSLLVRHIKDTDF-GNYMCQASNNLGSSQQ------FIQLSGI-----PN  142 (245)
Q Consensus        80 ~~~w~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~-g~y~C~~~n~~g~~~~------~~~~~~~-----~~  142 (245)
                      .+.|++++..+..     ..++.+.   ....|.|.++..+|. |.|+|.+.|..+....      .+.+...     |.
T Consensus       137 ~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~  213 (388)
T 2v5m_A          137 VVSWHTDEEENYFPGAEYDGKYLVL---PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPR  213 (388)
T ss_dssp             EEEEEETTCCEECSSSCBTTTEEEC---TTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEE
T ss_pred             eEEEEeCCCcccccccCCCCcEEEc---cCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCc
Confidence            8999998865532     2333332   234799999999999 9999999997643221      2333321     11


Q ss_pred             CCcc-ccCccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEE
Q psy12131        143 IPVF-QKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASV  221 (245)
Q Consensus       143 ~p~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v  221 (245)
                      .+.+ ........++.+.|.|.+.+.++. . ..|+++.. .............   .......+.|.++...+.+.|+|
T Consensus       214 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~p-~-v~W~~~~~-~~~~~~~~~~~~~---~~~~~~~L~i~~v~~~d~G~Y~C  287 (388)
T 2v5m_A          214 TPALVQKPLELMVAHTISLLCPAQGFPAP-S-FRWYKFIE-GTTRKQAVVLNDR---VKQVSGTLIIKDAVVEDSGKYLC  287 (388)
T ss_dssp             CCSSCCCCEEEETTSCEEECCCCEEESCC-E-EEEEEECT-TSSCEEECCCSSS---EEEETTEEEESSCCGGGCEEEEE
T ss_pred             CccccCCceEEeeCCcEEEEEECCCCCCC-E-EEEEecCC-CCcccccccccCc---eecccCEEEECcCCHHHCeEEEE
Confidence            1111 112234668899999998665433 2 33555532 1111110000000   00112468899999999999999


Q ss_pred             EEEecCCCCCCCcceEEec
Q psy12131        222 LAKNRFGWSRPSKAYVFAT  240 (245)
Q Consensus       222 ~a~N~~G~~~~s~~~~~~t  240 (245)
                      .|.|..|....+..+.+..
T Consensus       288 ~a~n~~g~~~~~~~l~V~~  306 (388)
T 2v5m_A          288 VVNNSVGGESVETVLTVTA  306 (388)
T ss_dssp             EEECSSCEEEEEEEEEEEE
T ss_pred             EEecCCCceeEEEEEEEeC
Confidence            9999999765555555543

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.88  E-value=5e-22  Score=153.89  Aligned_cols=223  Identities=15%  Similarity=0.127  Sum_probs=142.5

Q ss_pred             EEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEE-eecCCCeEEEE
Q psy12131          6 LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV-YANPPAKVEWF   84 (245)
Q Consensus         6 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~w~   84 (245)
                      ...+..+|.|.+++.+|+|.|+|.+.|..|...+..+.|.|...+.+...+....+.+|+.+.|.|.+ .+.|.+.+.|+
T Consensus        57 ~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~  136 (395)
T 1bih_A           57 LRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWK  136 (395)
T ss_dssp             ECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCCEEEEE
T ss_pred             EecCCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEE
Confidence            33445679999999999999999999987764444455555432222223445667799999999996 88899999999


Q ss_pred             ECC---EEecc----CCcEEEEecCceeEEEEccCCCCCCe---EEEEEEEeCCceeEEEEEEE---ec--C-------C
Q psy12131         85 RDG---TAITL----GGRIDMHVSSEKHSLLVRHIKDTDFG---NYMCQASNNLGSSQQFIQLS---GI--P-------N  142 (245)
Q Consensus        85 ~~~---~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g---~y~C~~~n~~g~~~~~~~~~---~~--~-------~  142 (245)
                      +++   .....    ..++....   ...|.|.++...|.|   .|+|.+.|..|.....+...   ..  +       .
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (395)
T 1bih_A          137 KRLSGADPNADVTDFDRRITAGP---DGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEP  213 (395)
T ss_dssp             EEETTSCGGGCCCCCCTTEEECT---TSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCC
T ss_pred             ecCCCcCcccccccccccEEEcC---CCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCc
Confidence            975   21111    23333322   237999999999999   99999999987754433221   11  0       1


Q ss_pred             CCccc-cCccccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEE
Q psy12131        143 IPVFQ-KSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEA  219 (245)
Q Consensus       143 ~p~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~  219 (245)
                      +|.+. .......++.+.|.|.+.+.++..  ..|+++..  .......+.....      .....+.|.++...+.+.|
T Consensus       214 ~p~~~~~~~~~~~G~~v~l~C~~~g~p~~~--i~W~~~g~~~~~~~~~~~~~~~~------~~~~~L~i~~~~~~d~G~Y  285 (395)
T 1bih_A          214 VPQYVSKDMMAKAGDVTMIYCMYGSNPMGY--PNYFKNGKDVNGNPEDRITRHNR------TSGKRLLFKTTLPEDEGVY  285 (395)
T ss_dssp             EEEEECCSEEEETTSCEEEEEEEECSSCCC--CEEEETTEECCCCTTSSEESCSS------STTSEEEESSCCGGGCEEE
T ss_pred             CceecCCceEEECCCcEEEEEEeccCCCCe--EEEEECCEEcCCCCceeEEEEec------CCCceEEEccCChhhCEEE
Confidence            22221 123456789999999996654332  23444432  0100000111000      0113789999999999999


Q ss_pred             EEEEEecCCCCCC-CcceEEe
Q psy12131        220 SVLAKNRFGWSRP-SKAYVFA  239 (245)
Q Consensus       220 ~v~a~N~~G~~~~-s~~~~~~  239 (245)
                      +|.|.|..|.... +..+.+.
T Consensus       286 ~C~a~n~~g~~~~~~~~l~V~  306 (395)
T 1bih_A          286 TCEVDNGVGKPQKHSLKLTVV  306 (395)
T ss_dssp             EEEECCSSSSCEEEEEEEEEE
T ss_pred             EEEEEeCCCCceEEEEEEEEE
Confidence            9999999988654 4445444

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.88  E-value=5.8e-21  Score=153.20  Aligned_cols=216  Identities=12%  Similarity=0.026  Sum_probs=134.1

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE----ecCCeEEeecceEEecCCCeEEEEEEEeec-CCC-eEEEEE
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV----IYPPEVSVEKQWIHTAPDMRAEIICNVYAN-PPA-KVEWFR   85 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~w~~   85 (245)
                      .|.|.+++.+|+|.|+|.|.|..+. ....+.+.+    ..+|.+........+.+|+.+.|.|.+.|. |.| .+.|++
T Consensus       179 ~L~i~~~~~~d~G~Y~C~a~n~~~~-~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k  257 (523)
T 2rcj_C          179 YLSLTPEQWKSHRSYSCQVTHEGST-VEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNS  257 (523)
T ss_pred             EEEEechhcCCCceEEEEEEecCcc-cccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEec
Confidence            5999999999999999999998776 344444322    245666543333456789999999999886 777 899999


Q ss_pred             CCEEeccCCcEEEEecC----ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCccccC---c-cccCCCe
Q psy12131         86 DGTAITLGGRIDMHVSS----EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKS---S-RRLGPDG  157 (245)
Q Consensus        86 ~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~~---~-~~~~~~~  157 (245)
                      ++..+.......+...+    ..+.|.|..+...| |.|+|.|.|..|.......+.+...|+.+...   . ....++.
T Consensus       258 ~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~  336 (523)
T 2rcj_C          258 GALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRT  336 (523)
T ss_pred             CCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCc
Confidence            98764321111111111    13579999999999 99999999999887666665543333322211   1 1466889


Q ss_pred             eEEEEEeCCCCCc---eEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12131        158 YRLVWQVDTYSGI---IQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP  232 (245)
Q Consensus       158 ~~l~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~  232 (245)
                      +.|.|.+.+.+|.   .. ..|+++..  ....-........+   .-.....+.|..+...+.+.|.|.|.|..|....
T Consensus       337 ~~l~C~~~g~~p~~~~~~-v~W~k~g~~l~~~~~~~~~~~~~g---~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  412 (523)
T 2rcj_C          337 PEVTCVVVDVSHEDPQVK-FNWYVDGVQVHNAKTKPREQQYNS---TYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPI  412 (523)
T ss_pred             eEEEEEEecccCCCCceE-EEEEECCeEccCCccCCceecCCC---cEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCce
Confidence            9999999764332   22 23555433  01100000000110   0011234667666656666666779999876654


Q ss_pred             C
Q psy12131        233 S  233 (245)
Q Consensus       233 s  233 (245)
                      +
T Consensus       413 ~  413 (523)
T 2rcj_C          413 E  413 (523)
T ss_pred             e
Confidence            4

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.87  E-value=2.2e-21  Score=148.81  Aligned_cols=208  Identities=10%  Similarity=0.068  Sum_probs=135.9

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTA   89 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~   89 (245)
                      ...|.|.+++.+|+|.|+|.+.+..     ..+.|.|..   +...+. ..+.+|+.+.|.|.+.+.|.|.+.|++++..
T Consensus        66 ~~~L~I~~v~~~D~G~Y~C~~~n~~-----~~~~l~V~~---~~~~~~-~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~  136 (363)
T 1wio_A           66 NFPLIIKNLKIEDSDTYICEVEDQK-----EEVQLLVFG---LTANSD-THLLQGQSLTLTLESPPGSSPSVQCRSPRGK  136 (363)
T ss_dssp             CCCEEECSCCGGGCEEEEEEETTEE-----EEEEEEEEE---EEESSC-SSEESBSCEEEEEECCTTCCCCEEEECSSSC
T ss_pred             eEEEEECCCCHHHCEEEEEEEEECC-----CcEEEEEEe---CCCCCc-eEEecCCCEEEEEEcCCCCCCeEEEEcCCCc
Confidence            5569999999999999999999863     356666664   222332 3467999999999999899999999998754


Q ss_pred             eccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCccccCccccCCCeeEEEEEeCCC--
Q psy12131         90 ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTY--  167 (245)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~--  167 (245)
                      +..          ....|.|.++..+|.|.|+|.+.|..+.....+.+.+...|+. ........++.+.|.|...+.  
T Consensus       137 ~~~----------~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~G~~v~l~C~~~~~~~  205 (363)
T 1wio_A          137 NIQ----------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA-SSIVYKKEGEQVEFSFPLAFTVE  205 (363)
T ss_dssp             EEE----------ESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCS-EEEEEEETBCCEEEECCCCCCCC
T ss_pred             ccc----------cceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCC-CCceEEecCCEEEEEEEEecccc
Confidence            311          2347999999999999999999998777666556555422222 123335678999999987552  


Q ss_pred             --CCceEEEEEEEeec-CCCCeEEEeeCCCCCCC-----------cceeeeEEEecCCCCCceEEEEEEEEec--CCCCC
Q psy12131        168 --SGIIQYLLKFRERE-ELTPWRNIVIPSDGSLA-----------GPIYTQSYNITGLQLFTQYEASVLAKNR--FGWSR  231 (245)
Q Consensus       168 --~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~i~~l~~~~~y~~~v~a~N~--~G~~~  231 (245)
                        .|...+ .|+++.. ....+............           .......+.|.++...+.+.|+|.|.|.  .|...
T Consensus       206 ~~~P~p~i-~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~  284 (363)
T 1wio_A          206 KLTGSGEL-WWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLH  284 (363)
T ss_dssp             SSCEEEEE-EEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEE
T ss_pred             cCCCceeE-EEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEE
Confidence              122222 3444433 11111111110000000           0001247899999889999999999999  88544


Q ss_pred             CCcceEE
Q psy12131        232 PSKAYVF  238 (245)
Q Consensus       232 ~s~~~~~  238 (245)
                      .+..+.+
T Consensus       285 ~~~~l~V  291 (363)
T 1wio_A          285 QEVNLVV  291 (363)
T ss_dssp             EEEEEEE
T ss_pred             EEEeEEE
Confidence            4433333

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.87  E-value=2.5e-20  Score=130.61  Aligned_cols=137  Identities=18%  Similarity=0.299  Sum_probs=114.0

Q ss_pred             ceEEEeecc--eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEee---cceEEecCCCeEEEEEEEeecC
Q psy12131          3 EIELLYNRE--SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE---KQWIHTAPDMRAEIICNVYANP   77 (245)
Q Consensus         3 ~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~~   77 (245)
                      ++.+..++.  +|.|.+++.+|+|.|+|.+.+..+. ....+.|.|..+|.+...   +....+..|+.+.|.|.+.+.|
T Consensus        53 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p  131 (197)
T 3lcy_A           53 KYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGE-VETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRP  131 (197)
T ss_dssp             SEEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCE-EEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEES
T ss_pred             cEEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCc-eeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeee
Confidence            344444332  6999999999999999999988776 677788888877766532   2445677899999999999999


Q ss_pred             CCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCC-CCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131         78 PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKD-TDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus        78 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      .|.+.|++++..+....++.+........|.|.++.. +|.|.|+|.+.|..|.....+.|.+.
T Consensus       132 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  195 (197)
T 3lcy_A          132 VPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ  195 (197)
T ss_dssp             CCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEe
Confidence            9999999999999888888877776678999999985 89999999999999998888877764

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.87  E-value=3.7e-21  Score=148.60  Aligned_cols=127  Identities=23%  Similarity=0.353  Sum_probs=112.3

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGT   88 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~   88 (245)
                      .+..|.|.+++.+|+|.|+|.|.|..|. ......|.|..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++.
T Consensus       256 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~  334 (384)
T 3kld_A          256 SNGILEIPNFQQEDAGSYECVAENSRGK-NVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGD  334 (384)
T ss_dssp             TSCEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTE
T ss_pred             CCcEEEECCCChhhCEEEEEEEEcCCCe-EEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCE
Confidence            3457999999999999999999999887 677888999999998887777888999999999999999999999999999


Q ss_pred             EeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131         89 AITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      .+....++.+.    ...|.|..+..+|.|.|+|.|.|..|.......|.+.
T Consensus       335 ~l~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          335 PLLTRDRIQIE----QGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             ECCCBTTEEEE----TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ECCCCccEEEe----CCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence            98776666553    2379999999999999999999999998888887764

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.86  E-value=9.6e-21  Score=132.65  Aligned_cols=123  Identities=18%  Similarity=0.274  Sum_probs=104.6

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCC-eEEEEECCEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTA   89 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~~~   89 (245)
                      +.|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.| .+.|++++..
T Consensus        68 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~  147 (195)
T 2c5d_C           68 SQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVP  147 (195)
T ss_dssp             EEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCB
T ss_pred             cEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEe
Confidence            579999999999999999999987664556689999999999888777888999999999999999999 9999999988


Q ss_pred             eccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeE-EEEEEEec
Q psy12131         90 ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQLSGI  140 (245)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~~~~~~  140 (245)
                      +......     .....|.|.++.  |.|.|+|.|.|..|... ..+.|.+.
T Consensus       148 ~~~~~~~-----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V~  192 (195)
T 2c5d_C          148 LATAPGH-----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITVL  192 (195)
T ss_dssp             SSSSTTS-----SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             ccCCCCc-----CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEEe
Confidence            7654432     245678999887  78999999999999875 67777763

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.86  E-value=5.2e-20  Score=129.96  Aligned_cols=122  Identities=14%  Similarity=0.274  Sum_probs=97.5

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe---------------------cCCeEEeecceEEecCCCeEEEE
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI---------------------YPPEVSVEKQWIHTAPDMRAEII   70 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---------------------~~p~~~~~~~~~~~~~g~~~~l~   70 (245)
                      +|.|.+++.+|+|.|+|.|.|  |. ......+.+.                     .+|.+.... ...+.+|..+.|.
T Consensus        62 ~L~I~~v~~~D~G~Y~C~a~N--g~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~  137 (207)
T 3rbs_A           62 EMFMEKLQDEDEGTYTFQLQD--GK-ATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLK  137 (207)
T ss_dssp             EEEESCCCGGGCEEEEEEEEE--TT-EEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEE
T ss_pred             EEEECCCChhhCEEEEEEEEC--CC-eEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEE
Confidence            599999999999999999999  44 3444443321                     267766555 4677899999999


Q ss_pred             EEEeec-CCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         71 CNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        71 C~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      |.+.|. |.|.+.|++++..+....++  ........|.|.++..+|.|.|+|.|.|..|.....+.|..
T Consensus       138 C~v~g~~P~p~i~W~k~g~~l~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~  205 (207)
T 3rbs_A          138 CKVANIKKETHIVWYKDEREISVDEKH--DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  205 (207)
T ss_dssp             EEEESCCTTCEEEEEETTEEECCCCCC--CCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEeCCCCCCEEEEEECCEECCCCCce--EcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence            999998 89999999999988765443  22233457999999999999999999999999988887764

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.86  E-value=3.8e-20  Score=129.65  Aligned_cols=183  Identities=16%  Similarity=0.151  Sum_probs=131.6

Q ss_pred             ecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         47 IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        47 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++.+...+....|.|.++..+|.|.|+|.+.|
T Consensus         5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   84 (197)
T 3lcy_A            5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN   84 (197)
T ss_dssp             CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred             CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEEC
Confidence            35677777777888999999999999999999999999999998888888887777778999999999999999999999


Q ss_pred             CCceeEEEEEEEecCCCCccc-----cCccccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCc
Q psy12131        127 NLGSSQQFIQLSGIPNIPVFQ-----KSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAG  199 (245)
Q Consensus       127 ~~g~~~~~~~~~~~~~~p~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  199 (245)
                      ..|.....+.+.+...|....     .......+..+.|.|.+.+.++. . ..|+++..  .......+....      
T Consensus        85 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~-v~W~~~~~~~~~~~~~~~~~~~------  156 (197)
T 3lcy_A           85 EVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVP-A-MTWFHGQKLLQNSENITIENTE------  156 (197)
T ss_dssp             SSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCC-E-EEEEETTEECCCCSSEEEEECS------
T ss_pred             CCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCC-e-eEEeECCEECCCCCceEEEEcC------
Confidence            988877666665542222111     11234568899999999665443 2 23454433  111111121111      


Q ss_pred             ceeeeEEEecCCCC-CceEEEEEEEEecCCCCCCCcceEEe
Q psy12131        200 PIYTQSYNITGLQL-FTQYEASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       200 ~~~~~~~~i~~l~~-~~~y~~~v~a~N~~G~~~~s~~~~~~  239 (245)
                        ....+.|.++.. .+.+.|+|.|.|..|....+..+.+.
T Consensus       157 --~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  195 (197)
T 3lcy_A          157 --HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ  195 (197)
T ss_dssp             --SEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             --CEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEe
Confidence              125688888874 67888888899999987665555554

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.86  E-value=2.6e-21  Score=137.32  Aligned_cols=135  Identities=19%  Similarity=0.305  Sum_probs=107.0

Q ss_pred             cceEEEe-----ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEE-ee
Q psy12131          2 KEIELLY-----NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV-YA   75 (245)
Q Consensus         2 ~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~   75 (245)
                      +|+.+..     +..+|.|.+++.+|+|.|+|.+.+..|. ....+.|.|..+|.+...+....+..|+.+.|.|.+ .+
T Consensus        70 ~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g  148 (214)
T 3jz7_A           70 GRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGV-ANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEG  148 (214)
T ss_dssp             TTEEESCSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBC
T ss_pred             cceEEeccCccCCcccEEEccCChhhCeEEEEEEEeCCCc-cccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCC
Confidence            3555544     4567999999999999999999998776 688899999988887655544457889999999999 88


Q ss_pred             cCCCeEEEEECC--EEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecC
Q psy12131         76 NPPAKVEWFRDG--TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIP  141 (245)
Q Consensus        76 ~~~~~~~w~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~  141 (245)
                      .|.|.+.|++++  ..+......    ......|.|.++..+|.|.|+|.|.|..|.....+.|.+.+
T Consensus       149 ~p~~~v~W~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  212 (214)
T 3jz7_A          149 SLPLQFEWQKLSDSQTMPTPWLA----EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVP  212 (214)
T ss_dssp             CSSCEEEEEECSTTCCCCGGGGG----GTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred             CCCCEEEEEECCCCCccCcccee----ccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeC
Confidence            999999999954  333221111    11234899999999999999999999999998888888763

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.86  E-value=4.1e-20  Score=128.69  Aligned_cols=134  Identities=23%  Similarity=0.434  Sum_probs=108.6

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEecCCeEEeecc--eEEecCCCeEEEEEEEeecCCC
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEKQ--WIHTAPDMRAEIICNVYANPPA   79 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~~~   79 (245)
                      |+.+..+ ..|.|.+++.+|+|.|+|.+.+..+.. ....+.+.|..+|.+...+.  ...+..|+.+.|.|.+.+.|.+
T Consensus        50 ~~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~  128 (189)
T 2v5t_A           50 RFAMLAN-NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP  128 (189)
T ss_dssp             TEEECTT-SCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCC
T ss_pred             eEEEecC-CCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCC
Confidence            4444443 459999999999999999999887542 44667788888887766543  4567789999999999999999


Q ss_pred             eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         80 KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        80 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      .+.|++++..+....++.+..  ....|.|.++..+|.|.|+|.+.|..|.....+.+.+
T Consensus       129 ~v~W~~~g~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  186 (189)
T 2v5t_A          129 AISWFRNGKLIEENEKYILKG--SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV  186 (189)
T ss_dssp             EEEEEETTEECCCSSSEEEET--TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEEEECCEECcCCCcEEEec--CCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEE
Confidence            999999999888776665543  3457999999999999999999999998888777665

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.86  E-value=1.5e-20  Score=137.14  Aligned_cols=207  Identities=14%  Similarity=0.136  Sum_probs=108.9

Q ss_pred             cCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecC-----CCeEEEEECC--EEe
Q psy12131         18 VTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP-----PAKVEWFRDG--TAI   90 (245)
Q Consensus        18 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-----~~~~~w~~~~--~~~   90 (245)
                      ++.+|+|.|+|.|.   |. ....+.+.+..+|.+...+..+.+.+|+.+.|.|.+.+.+     .+.+.|+++.  ..+
T Consensus        11 v~~~dsg~Y~C~a~---g~-~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~   86 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GY-SFTNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSP   86 (254)
T ss_dssp             -------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCC
T ss_pred             ecCCccEEEEEcCc---hh-hhhhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCc
Confidence            88999999999999   43 2334445555677777778888999999999999999887     4899999732  211


Q ss_pred             ------------ccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeE---EEEEEEecCCCCccccC---ccc
Q psy12131         91 ------------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ---QFIQLSGIPNIPVFQKS---SRR  152 (245)
Q Consensus        91 ------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~---~~~~~~~~~~~p~~~~~---~~~  152 (245)
                                  ....++.+...+....|.|.++..+|.|.|.|.+.|..+...   ..+.+.....+|.+...   ...
T Consensus        87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~  166 (254)
T 2c1o_A           87 KRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQ  166 (254)
T ss_dssp             EEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHH
T ss_pred             eEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhh
Confidence                        112456655555667899999999999999999999764321   13344333334443321   112


Q ss_pred             cCCCeeEEEEEeCCC-CCceEEEEEEEeec-CCCC-eEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        153 LGPDGYRLVWQVDTY-SGIIQYLLKFRERE-ELTP-WRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       153 ~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      ..+..+.|.|.+.+. ++... ..|+++.. .... ........... ..-.....+.|..+...+.+.|.|.|.|....
T Consensus       167 ~~g~~v~l~C~~~g~~p~~~~-v~W~k~g~~l~~~~~~~~~~~~~~~-g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  244 (254)
T 2c1o_A          167 LTSGGASVVCFLNNFYPKDIN-VKWKIDGSERQNGVLNSWTDQDSKD-STYSMSSTLTLTKDEYERHNSYTCEATHKTST  244 (254)
T ss_dssp             HHTTEEEEEEEEEEEBSSCCE-EEEEESSSEECTTEEEEECCCCTTT-CCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             ccCCcEEEEEEEecccCCCcE-EEEEECCCcccCcceeccccccCCC-CcEEEEEEEEeccccccCCCeEEEEEEcCCCC
Confidence            346699999999653 33222 23555543 1111 11111111100 00011345777777665566667779998765


Q ss_pred             C
Q psy12131        230 S  230 (245)
Q Consensus       230 ~  230 (245)
                      .
T Consensus       245 ~  245 (254)
T 2c1o_A          245 S  245 (254)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.86  E-value=2.1e-20  Score=130.39  Aligned_cols=122  Identities=20%  Similarity=0.345  Sum_probs=103.0

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGT   88 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~   88 (245)
                      ....|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++.
T Consensus        60 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~  139 (191)
T 1epf_A           60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGR  139 (191)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTE
T ss_pred             CceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCE
Confidence            34679999999999999999999988555788899999999999888877888999999999999999999999999998


Q ss_pred             EeccC--CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE
Q psy12131         89 AITLG--GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ  133 (245)
Q Consensus        89 ~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  133 (245)
                      .+...  .++....   ...|.|.++..+|.|.|+|.|.|..+....
T Consensus       140 ~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  183 (191)
T 1epf_A          140 DVILKKDVRFIVLS---NNYLQIRGIKKTDEGTYRCEGRILARGEIN  183 (191)
T ss_dssp             EGGGGCCTTEEECT---TSCEEETTCCGGGCEEEEEEEEEGGGTEEE
T ss_pred             EeeccCCceEEEec---CCeEEECCCChhhCEEEEEEEEEecceeEE
Confidence            87643  2343332   237999999999999999999998864433

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.86  E-value=2.4e-20  Score=130.43  Aligned_cols=181  Identities=19%  Similarity=0.201  Sum_probs=128.1

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCC--cEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  .+.+........|.|.++...|.|.|.|.+.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT   83 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence            46777777777888999999999999999999999999998776543  4455555567899999999999999999999


Q ss_pred             eCCceeEEEEEEEecC--CCCccccC---ccccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCC
Q psy12131        126 NNLGSSQQFIQLSGIP--NIPVFQKS---SRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLA  198 (245)
Q Consensus       126 n~~g~~~~~~~~~~~~--~~p~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  198 (245)
                      |..|.....+.+.+..  .+|.+...   .....+..+.|.|.+.+.++..  ..|+++..  .......+.....    
T Consensus        84 n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~--v~W~~~~~~~~~~~~~~~~~~~~----  157 (194)
T 2a38_A           84 NGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPV--VKFYRDGAEIQSSLDFQISQEGD----  157 (194)
T ss_dssp             ETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCE--EEEEETTEECCCSSSEEEEEETT----
T ss_pred             cCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCe--EEEEECCEECCCCCcEEEEEcCC----
Confidence            9988877766665542  34443322   2346788999999996654432  33555433  1111111111111    


Q ss_pred             cceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEE
Q psy12131        199 GPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVF  238 (245)
Q Consensus       199 ~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~  238 (245)
                          ...+.|.++...+.+.|+|.|.|..|....+..+.+
T Consensus       158 ----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          158 ----LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             ----EEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ----EEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence                146788888888888999999999998665555544

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.86  E-value=6.2e-20  Score=130.26  Aligned_cols=123  Identities=27%  Similarity=0.503  Sum_probs=101.3

Q ss_pred             cceEEEecc-CCCCCEEEEEEEEcCCCCceeeEEEEEEecC-------CeEEeecceEEecCCCeEEEEEEEeecCCCeE
Q psy12131         10 RESLDLDRV-TLKLAGLYQCIASNNIGESTSKNFIVNVIYP-------PEVSVEKQWIHTAPDMRAEIICNVYANPPAKV   81 (245)
Q Consensus        10 ~~~L~i~~~-~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~   81 (245)
                      +..|.|.++ +.+|+|.|+|.+.|..|. ....+.|.|..+       |.+...+....+..|+.+.|.|.+.|.|.|.+
T Consensus        62 ~~~L~i~~v~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v  140 (212)
T 2yd6_A           62 GSVLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEI  140 (212)
T ss_dssp             EEEEEECSCCTTTTCEEEEEEEEETTEE-EEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEE
T ss_pred             ceEEEEeccCCCCCCeEEEEEEEcCCCc-EEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeE
Confidence            356999999 599999999999998877 677888888754       66666666677889999999999999999999


Q ss_pred             EEEECCEEeccC---CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE
Q psy12131         82 EWFRDGTAITLG---GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ  133 (245)
Q Consensus        82 ~w~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  133 (245)
                      .|++++..+...   .++..........|.|.++..+|.|.|+|.|.|..|....
T Consensus       141 ~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s  195 (212)
T 2yd6_A          141 TWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYS  195 (212)
T ss_dssp             EEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             EEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCcccc
Confidence            999999887653   3444444455689999999999999999999999997654

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.85  E-value=1.1e-19  Score=128.93  Aligned_cols=126  Identities=19%  Similarity=0.397  Sum_probs=104.3

Q ss_pred             ceEEEeccCC-CCCEEEEEEEEcCCCCceeeEEEEEEecC-------CeEEeecceEEecCCCeEEEEEEEeecCCCeEE
Q psy12131         11 ESLDLDRVTL-KLAGLYQCIASNNIGESTSKNFIVNVIYP-------PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE   82 (245)
Q Consensus        11 ~~L~i~~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~   82 (245)
                      ..|.|.+++. +|+|.|+|.+.|..|...+..+.|.|..+       |.+...+....+..|+.+.|.|.+.+.|.+.+.
T Consensus        64 ~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~  143 (212)
T 2yd1_A           64 SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIY  143 (212)
T ss_dssp             EEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEE
T ss_pred             EEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEE
Confidence            5799999999 99999999999988775677888888865       677777767778899999999999999999999


Q ss_pred             EEECCEEeccC-CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEE-EEEEec
Q psy12131         83 WFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF-IQLSGI  140 (245)
Q Consensus        83 w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~-~~~~~~  140 (245)
                      |++++..+... .++.+.    ...|.|.++..+|.|.|+|.|.|..|..... +.|.+.
T Consensus       144 W~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~  199 (212)
T 2yd1_A          144 WIKNQTKVDMSNPRYSLK----DGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK  199 (212)
T ss_dssp             EEETTEECCTTSTTEEEE----TTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEECCeEcccCCCeEEcc----CCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEE
Confidence            99999888753 344332    2379999999999999999999999987643 455544

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.85  E-value=2.2e-19  Score=134.31  Aligned_cols=188  Identities=17%  Similarity=0.210  Sum_probs=135.6

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC-CcEEEE-ecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+... .++.+. ..+....|.|.++..+|.|.|+|.+.
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~   82 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence            3688887888888999999999999999999999999999887654 344443 34456689999999999999999999


Q ss_pred             eCCceeEEEEEEEecCCC----Cccc---cCccccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCC
Q psy12131        126 NNLGSSQQFIQLSGIPNI----PVFQ---KSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGS  196 (245)
Q Consensus       126 n~~g~~~~~~~~~~~~~~----p~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  196 (245)
                      |..|.....+.|.+...|    |...   .......+..+.|.|.+.+.++. . ..|+++..  .......+.....  
T Consensus        83 n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~-i~W~~~~~~~~~~~~~~~~~~~~--  158 (305)
T 2nzi_A           83 NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP-V-ITWQKGQDLIDNNGHYQVIVTRS--  158 (305)
T ss_dssp             ETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCC-E-EEEEESSSBCCSSSSCEEEECSS--
T ss_pred             cCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCC-E-EEEEECCEECCCCCcEEEEEcCC--
Confidence            999987777777664222    1111   11234568899999999665433 2 23444433  1111222221111  


Q ss_pred             CCcceeeeEEEecC-CCCCceEEEEEEEEecCCCCCCCcceEEecCCCCC
Q psy12131        197 LAGPIYTQSYNITG-LQLFTQYEASVLAKNRFGWSRPSKAYVFATEGAET  245 (245)
Q Consensus       197 ~~~~~~~~~~~i~~-l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~~~~  245 (245)
                            ...+.|.+ +...+.|.|+|.|.|..|....+..+.+...|.+|
T Consensus       159 ------~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p  202 (305)
T 2nzi_A          159 ------FTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPP  202 (305)
T ss_dssp             ------EEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCC
T ss_pred             ------ceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCC
Confidence                  26788888 99999999999999999998887778887776654

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.85  E-value=1e-19  Score=125.95  Aligned_cols=120  Identities=22%  Similarity=0.273  Sum_probs=101.5

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCC-eEEEEECCEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTA   89 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~~~   89 (245)
                      ..|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+...+....+..|+.+.|.|.+.+.|.| .+.|++++..
T Consensus        60 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~  139 (182)
T 1rhf_A           60 GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTK  139 (182)
T ss_dssp             EEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEE
T ss_pred             EEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeE
Confidence            579999999999999999999987665677899999999999888877888999999999999999999 9999999988


Q ss_pred             eccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE-EEEEEe
Q psy12131         90 ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FIQLSG  139 (245)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~~~~  139 (245)
                      +.....       ....|.|.++  .|.|.|+|.+.|..|.... .+.|.+
T Consensus       140 ~~~~~~-------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          140 IGGPAP-------SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             CSCSEE-------SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCCCCC-------CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence            754321       3457888887  4899999999999987743 555543

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.85  E-value=1.1e-19  Score=135.04  Aligned_cols=217  Identities=12%  Similarity=0.048  Sum_probs=132.4

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCc--eeeEEEEEEecCCeEEe--ecc--eEEecCCCeEEEEEEEeecCCCeEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGES--TSKNFIVNVIYPPEVSV--EKQ--WIHTAPDMRAEIICNVYANPPAKVEWF   84 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~~~p~~~~--~~~--~~~~~~g~~~~l~C~~~~~~~~~~~w~   84 (245)
                      +.|.|.+++.+|+|.|+|.|.|..|..  .+..+.|.|..++....  .+.  ...+.+|+.+.|.|.+. .|.|.+.|+
T Consensus        51 ~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~  129 (289)
T 3mjg_X           51 SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLH  129 (289)
T ss_dssp             EEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEE
T ss_pred             EEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEE
Confidence            569999999999999999999987652  34455555553332221  111  26688999999999998 677889998


Q ss_pred             ECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE-EEEEEecC-CCCcccc---CccccCCCeeE
Q psy12131         85 RDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FIQLSGIP-NIPVFQK---SSRRLGPDGYR  159 (245)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~~~~~~-~~p~~~~---~~~~~~~~~~~  159 (245)
                      +.+........+   .. .. .+.    ...|.|.|+|.+.|..+.... .+.+.+.. .+|.+..   ......++.+.
T Consensus       130 ~~~~~~~~~~~~---~~-~~-~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~  200 (289)
T 3mjg_X          130 EKKGDVALPVPY---DH-QR-GFS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENIT  200 (289)
T ss_dssp             ESSCCSCCCCCE---ET-TT-EEE----ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEE
T ss_pred             eCCCCCccceee---cC-Cc-Cee----eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEE
Confidence            865222211111   00 11 111    246899999999987765433 33444433 2333222   13457799999


Q ss_pred             EEEEeCCCCCceEEEEEEEeec-CCCCeE-EEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceE
Q psy12131        160 LVWQVDTYSGIIQYLLKFRERE-ELTPWR-NIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYV  237 (245)
Q Consensus       160 l~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~  237 (245)
                      |.|.+.+++++ .+ .|+++.. ...... .......   ........+.|.++...+.+.|+|.|.|.+|....+..+.
T Consensus       201 L~C~~~g~p~p-~v-~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~  275 (289)
T 3mjg_X          201 LMCIVIGNEVV-NF-EWTYPRKESGRLVEPVTDFLLD---MPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN  275 (289)
T ss_dssp             EEEEEESCSSB-EE-EEECTTSSSSCCCCCEEEESCT---TTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEECCCCCc-ce-EEEcCCccCCCcccccccccCC---cceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEE
Confidence            99999775433 33 2443322 111011 1111110   0122347799999999999999999999999988888777


Q ss_pred             EecCC
Q psy12131        238 FATEG  242 (245)
Q Consensus       238 ~~t~~  242 (245)
                      +.-.+
T Consensus       276 v~~~~  280 (289)
T 3mjg_X          276 ITVVE  280 (289)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            76554

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.85  E-value=3.1e-20  Score=131.60  Aligned_cols=136  Identities=22%  Similarity=0.457  Sum_probs=104.8

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEecCCeEEeecceEEecCCCeEEEEEE-EeecCCCe
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICN-VYANPPAK   80 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~-~~~~~~~~   80 (245)
                      |+.+..  ..|.|.+++.+|+|.|+|.+.+..|.. .+..+.|.|..+|.+...+....+..|+.+.|.|. +.+.|.|.
T Consensus        59 r~~~~~--~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~  136 (212)
T 1f97_A           59 RVTFSS--SGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSE  136 (212)
T ss_dssp             TEEEET--TEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCE
T ss_pred             cEEeec--eeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCE
Confidence            444443  679999999999999999999987632 57788899998888766555556789999999999 78999999


Q ss_pred             EEEEECCE-EeccCCcE-------EEEecCceeEEEEccCCCCCCeEEEEEEEeCCcee--EEEEEEEec
Q psy12131         81 VEWFRDGT-AITLGGRI-------DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS--QQFIQLSGI  140 (245)
Q Consensus        81 ~~w~~~~~-~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~--~~~~~~~~~  140 (245)
                      +.|++++. .+......       ..........|.|.++..+|.|.|+|.|.|..|..  ...+.|.+.
T Consensus       137 i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          137 YSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             EEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             EEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence            99999998 76653321       12222345689999999999999999999999877  445555544

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.85  E-value=5.9e-19  Score=125.16  Aligned_cols=181  Identities=15%  Similarity=0.178  Sum_probs=129.6

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEec-cCCcEEEEe-cCceeEEEEccCCC-CCCeEEEEEE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAIT-LGGRIDMHV-SSEKHSLLVRHIKD-TDFGNYMCQA  124 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~-~d~g~y~C~~  124 (245)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+.. .+....|.|.++.. .|.|.|+|.+
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~   84 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA   84 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence            47888888888889999999999999999999999999999886 445555433 34457899999999 9999999999


Q ss_pred             EeCCce-eEEEEEEEecCC------CCccccC---ccccCCCeeEEEEEeCCCCCceEEEEEEEeec---CCCCeEEEee
Q psy12131        125 SNNLGS-SQQFIQLSGIPN------IPVFQKS---SRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE---ELTPWRNIVI  191 (245)
Q Consensus       125 ~n~~g~-~~~~~~~~~~~~------~p~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  191 (245)
                      .|..|. ....+.+.+...      +|.+...   .....++.+.|.|.+.+.++..  ..|+++..   ........  
T Consensus        85 ~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~--i~W~~~~~~~~~~~~~~~~--  160 (212)
T 2yd1_A           85 ENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPN--IYWIKNQTKVDMSNPRYSL--  160 (212)
T ss_dssp             ECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCE--EEEEETTEECCTTSTTEEE--
T ss_pred             EeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCe--EEEEECCeEcccCCCeEEc--
Confidence            999887 566666665432      1333222   2345688999999997665432  33555433   00111111  


Q ss_pred             CCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCC-cceEEecCC
Q psy12131        192 PSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS-KAYVFATEG  242 (245)
Q Consensus       192 ~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s-~~~~~~t~~  242 (245)
                                ....+.|.++...+.+.|+|.|.|..|....+ ..+.|....
T Consensus       161 ----------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~  202 (212)
T 2yd1_A          161 ----------KDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR  202 (212)
T ss_dssp             ----------ETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             ----------cCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence                      11368899999999999999999999987654 566666544

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.84  E-value=1.1e-18  Score=123.81  Aligned_cols=177  Identities=15%  Similarity=0.168  Sum_probs=125.7

Q ss_pred             ecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEe-cCceeEEEEccCC-CCCCeEEEEEE
Q psy12131         47 IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHV-SSEKHSLLVRHIK-DTDFGNYMCQA  124 (245)
Q Consensus        47 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~-~~d~g~y~C~~  124 (245)
                      ..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.......... .+....|.|.++. ..|.|.|+|.+
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a   83 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA   83 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence            357788777778888999999999999999999999999999887654333322 3346789999994 99999999999


Q ss_pred             EeCCceeEEEEEEEecCC------CCccccC---ccccCCCeeEEEEEeCCCCCceEEEEEEEeec--CC----CCeEEE
Q psy12131        125 SNNLGSSQQFIQLSGIPN------IPVFQKS---SRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--EL----TPWRNI  189 (245)
Q Consensus       125 ~n~~g~~~~~~~~~~~~~------~p~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~  189 (245)
                      .|..|.....+.+.+...      .|.+...   .....++.+.|.|.+.+.++. . ..|+++..  ..    .... .
T Consensus        84 ~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~-v~W~~~g~~l~~~~~~~~~~-~  160 (212)
T 2yd6_A           84 SNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDP-E-ITWFKDFLPVDTSNNNGRIK-Q  160 (212)
T ss_dssp             EETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCC-E-EEEEETTEEC------CCEE-E
T ss_pred             EcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCC-e-EEEEECCccccCcCCCceEE-E
Confidence            999988777776666422      2333221   234568899999999766443 2 33555433  00    1111 1


Q ss_pred             eeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCc
Q psy12131        190 VIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSK  234 (245)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~  234 (245)
                      ....        ....+.|.++...+.+.|+|.|.|.+|....+.
T Consensus       161 ~~~~--------~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~  197 (212)
T 2yd6_A          161 LRSE--------SIGALQIEQSEESDQGKYECVATNSAGTRYSAP  197 (212)
T ss_dssp             EEET--------TEEEEEECSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             EecC--------CeEEEEEcCCCcccCEEEEEEEECCCCcccccc
Confidence            1101        126788999999999999999999999865443

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.84  E-value=1.1e-19  Score=128.43  Aligned_cols=132  Identities=22%  Similarity=0.304  Sum_probs=103.2

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecC---CeEEeecceEEecCCCeEEEEEEEeecCCC
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP---PEVSVEKQWIHTAPDMRAEIICNVYANPPA   79 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~   79 (245)
                      |+.+..+ .+|.|.+++.+|+|.|+|.+.+..+......+.|.|..+   |.+...+..  +..|+.+.|.|.+.+.| |
T Consensus        64 r~~~~~~-~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p  139 (208)
T 3r4d_A           64 REIIYSN-GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-A  139 (208)
T ss_dssp             SEEECTT-SCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-C
T ss_pred             eeEEecC-CeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-C
Confidence            4444433 459999999999999999999986544677888888765   555444433  78899999999999865 8


Q ss_pred             eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE-EEEEEec
Q psy12131         80 KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FIQLSGI  140 (245)
Q Consensus        80 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~~~~~  140 (245)
                      .+.|++++..+....++.+...  ...|.|.++..+|.|.|+|.+.|..|.... .+++.+.
T Consensus       140 ~i~W~~~g~~l~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~  199 (208)
T 3r4d_A          140 NIQWLFNSQSLQLTERMTLSQN--NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII  199 (208)
T ss_dssp             EEEEEETTEECCCCSSEEEETT--TTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC
T ss_pred             ceEEEECCEeCCCCCCeEEcCC--CCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEE
Confidence            9999999999887776665433  258999999999999999999999987554 4455443

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.84  E-value=5.2e-20  Score=135.11  Aligned_cols=197  Identities=13%  Similarity=0.066  Sum_probs=129.0

Q ss_pred             ecceEEEecc---CCCCCEE--EEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEE
Q psy12131          9 NRESLDLDRV---TLKLAGL--YQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEW   83 (245)
Q Consensus         9 ~~~~L~i~~~---~~~d~G~--Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w   83 (245)
                      .+..|.+..+   +.+|+|.  |+|.+.|..|. ....+.|.|...|..........+.+|+.+.|.|.+.  |.+.+.|
T Consensus        54 ~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~-~~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~--p~~~i~W  130 (265)
T 2oz4_A           54 GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS-QETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRAKVTL  130 (265)
T ss_dssp             CSSEEEEEEEEEECGGGCEEEEEEEEEEETTEE-EEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECC--TTSEEEE
T ss_pred             CCCeEEEEeecccccccCCcceEEEEEecCCCC-cEEEEEEEEeCCCCceeecCCceecCCCcEEEEEEcc--CCCEEEE
Confidence            3445777766   8888885  99999998877 6778888987643322233344567899999999998  8899999


Q ss_pred             EECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC-ceeE---EEEEEEec--CCCCcccc--CccccCC
Q psy12131         84 FRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL-GSSQ---QFIQLSGI--PNIPVFQK--SSRRLGP  155 (245)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~-g~~~---~~~~~~~~--~~~p~~~~--~~~~~~~  155 (245)
                        ++..+...        +..+.|.+..+..+|.|.|+|.+.|.. |...   ..+.+.+.  |.......  ......+
T Consensus       131 --~g~~~~~~--------~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g  200 (265)
T 2oz4_A          131 --NGVPAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPEN  200 (265)
T ss_dssp             --SSCSSSCC--------SSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETT
T ss_pred             --CCEEccCC--------CCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCC
Confidence              77665322        234568888899999999999998643 5443   44444443  22221111  1234678


Q ss_pred             CeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcc
Q psy12131        156 DGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKA  235 (245)
Q Consensus       156 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~  235 (245)
                      +.+.|.|.+.++++..  ..|+++..      . ......        . +   .+...+.+.|+|.|.|..|....+..
T Consensus       201 ~~~~l~C~~~g~P~p~--i~W~~~~~------~-~~~~g~--------~-~---~v~~~d~G~Y~C~a~N~~G~~~~~~~  259 (265)
T 2oz4_A          201 SQQTPMCQAWGNPLPE--LKCLKDGT------F-PLPIGE--------S-V---TVTRDLEGTYLCRARSTQGEVTREVT  259 (265)
T ss_dssp             CEECCCCCCEEESCCE--EEEEETTT------E-ECCTTS--------C-E---ECCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CeEEEEeECccCCCCe--EEEEECCc------c-cCCCCc--------E-E---EeehhhCeEEEEEEECCCCcEEEEEE
Confidence            9999999997665432  23444422      1 111111        1 1   25557777788889999998766666


Q ss_pred             eEEe
Q psy12131        236 YVFA  239 (245)
Q Consensus       236 ~~~~  239 (245)
                      +.+.
T Consensus       260 l~V~  263 (265)
T 2oz4_A          260 VNVL  263 (265)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6554

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.84  E-value=4.9e-20  Score=144.94  Aligned_cols=223  Identities=11%  Similarity=0.013  Sum_probs=134.9

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCCC--ceeeEEEEEEec----CCeEEeecceEEecCCCeEEEEE
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIIC   71 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C   71 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|+|.+.+..+.  .....+.|.|..    +|.+...+....+..|+.+.|.|
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C  145 (444)
T 1igt_B           66 GRFTISRDNAKNTLYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGC  145 (444)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEE
T ss_pred             CceEEEEeCCCCeEEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEE
Confidence            47777653    357999999999999999999987543  123346777763    45554333223347899999999


Q ss_pred             EEeec-CCC-eEEEEECCEEeccCCcEEEEecC---ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe-------
Q psy12131         72 NVYAN-PPA-KVEWFRDGTAITLGGRIDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG-------  139 (245)
Q Consensus        72 ~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~-------  139 (245)
                      .+.|. |.| .+.|++++..+...........+   ..+.|.|..+...| |.|.|.+.|..+.......+..       
T Consensus       146 ~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~  224 (444)
T 1igt_B          146 LVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKP  224 (444)
T ss_dssp             EEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCC
T ss_pred             EEcceeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCccc
Confidence            99885 776 99999987652110000000011   12468899998889 9999999999887544443322       


Q ss_pred             ----------cCCCCcc-ccC--cc--ccCCCeeEEEEEeCCCC---CceEEEEEEEeec---CCCCeEEEeeCCCCCCC
Q psy12131        140 ----------IPNIPVF-QKS--SR--RLGPDGYRLVWQVDTYS---GIIQYLLKFRERE---ELTPWRNIVIPSDGSLA  198 (245)
Q Consensus       140 ----------~~~~p~~-~~~--~~--~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  198 (245)
                                ...+|.. ...  ..  ...|+.+.|.|.+.+.+   +...+ .|+++..   .............    
T Consensus       225 ~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v-~W~k~~~~~~~~~~~~~~~~~~~----  299 (444)
T 1igt_B          225 CPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQI-SWFVNNVEVHTAQTQTHREDYNS----  299 (444)
T ss_dssp             CCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEE-EEEETTEECSSTTCBCCEEECSS----
T ss_pred             CCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEE-EEEECCccccCcccccceeCCCC----
Confidence                      1112322 111  11  36688999999996542   32232 3555433   0000000000000    


Q ss_pred             cceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        199 GPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       199 ~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      .......+.|..+...+.+.|+|.|.|..|..
T Consensus       300 ~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~  331 (444)
T 1igt_B          300 TLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA  331 (444)
T ss_dssp             SEEEEEEEECCHHHHHTTCEEEEEEECTTCSS
T ss_pred             cEEEEEEEEEcHHHhccCCcEEEEEEcCCCCC
Confidence            00123467888777676777777799998876

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.84  E-value=1.2e-19  Score=139.96  Aligned_cols=127  Identities=21%  Similarity=0.296  Sum_probs=112.6

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGT   88 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~   88 (245)
                      ....|.|.+++.+|+|.|+|.|.|..|. ....+.|.|..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++.
T Consensus       255 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~  333 (382)
T 1cs6_A          255 SEPLLHIQNVDFEDEGTYECEAENIKGR-DTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ  333 (382)
T ss_dssp             SSSEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTE
T ss_pred             CCcEEEEccCChhhCEEEEEEEEcCCCe-EEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCE
Confidence            4567999999999999999999999887 688889999999998887777788899999999999999999999999999


Q ss_pred             EeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131         89 AITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      .+....++.+.    ...|.|.++..+|.|.|+|.|.|..|.....+.|.+.
T Consensus       334 ~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          334 PLASQNRIEVS----GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             ECCCCSSEEEE----TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ECCCCceEEEE----CCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            98877666553    2379999999999999999999999998888877753

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.84  E-value=4e-20  Score=140.75  Aligned_cols=124  Identities=16%  Similarity=0.229  Sum_probs=89.0

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe----cCCeEEeecceEEecCCCeEEEEEEE
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNV   73 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~   73 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|+|.+.+..+. ....+.|.|.    .+|.+...+....+..|+.+.|.|.+
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~-~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~  144 (344)
T 1za6_B           66 GKATLTADTSASTAYVELSSLRSEDTAVYFCTRSLNMAY-WGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLV  144 (344)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTTTCE-ECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEE
T ss_pred             CcEEEEEecCCCEEEEEECCCCcccCEEEEEEEecCcce-ecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEE
Confidence            46776653    347999999999999999999985433 3445677877    34555544333445789999999999


Q ss_pred             eec-CC-CeEEEEECCEEecc---------CCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeE
Q psy12131         74 YAN-PP-AKVEWFRDGTAITL---------GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ  132 (245)
Q Consensus        74 ~~~-~~-~~~~w~~~~~~~~~---------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  132 (245)
                      .|. |. +.+.|++++..+..         +..+..     .+.|.|..+..+| |.|+|.+.|..+...
T Consensus       145 ~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~  208 (344)
T 1za6_B          145 KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL-----SSVVTVPSSSLGT-QTYICNVNHKPSNTK  208 (344)
T ss_dssp             EEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEE-----EEEEEEETTHHHH-BCEEEEEEEGGGTEE
T ss_pred             eeEECCCeEEEEecCCccCceeECCCeECCCCCEEE-----EEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence            986 54 69999998865311         111111     2468888888777 999999999887543

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.83  E-value=3.3e-19  Score=134.02  Aligned_cols=137  Identities=15%  Similarity=0.227  Sum_probs=110.2

Q ss_pred             ceEEEeec--ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec--------------------CCeEEee-cceE
Q psy12131          3 EIELLYNR--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY--------------------PPEVSVE-KQWI   59 (245)
Q Consensus         3 ~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--------------------~p~~~~~-~~~~   59 (245)
                      ++.+...+  ..|.|.+++.+|+|.|+|.|.|..|. ....+.|.|..                    +|.+... +...
T Consensus       154 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~  232 (317)
T 2y25_A          154 RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG-HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVV  232 (317)
T ss_dssp             SEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEE
T ss_pred             CeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCce-EEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccE
Confidence            34444333  34999999999999999999998776 56666666531                    3444333 4556


Q ss_pred             EecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEec-CceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131         60 HTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      .+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+... +....|.|.++..+|.|.|+|.|.|..|.....+.|.
T Consensus       233 ~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~  312 (317)
T 2y25_A          233 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS  312 (317)
T ss_dssp             EEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEE
Confidence            788999999999999999999999999999887777776554 5567999999999999999999999999988888877


Q ss_pred             ec
Q psy12131        139 GI  140 (245)
Q Consensus       139 ~~  140 (245)
                      +.
T Consensus       313 V~  314 (317)
T 2y25_A          313 VF  314 (317)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.83  E-value=2.1e-19  Score=133.55  Aligned_cols=139  Identities=22%  Similarity=0.411  Sum_probs=110.3

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEecCCeEEeecc--eEEecCCCeEEEEEEEeecCCC
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEKQ--WIHTAPDMRAEIICNVYANPPA   79 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~~~   79 (245)
                      ++.+.. +..|.|.+++.+|+|.|+|.+.+..+.. ....+.+.|..+|.+...+.  ...+..|+.+.|.|.+.|.|.|
T Consensus       146 ~~~~~~-~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p  224 (291)
T 2wim_A          146 RFAMLA-NNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP  224 (291)
T ss_dssp             SEEECT-TSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCC
T ss_pred             eEEEcc-CCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCC
Confidence            344443 3459999999999999999999887542 45677888888888766543  3456789999999999999999


Q ss_pred             eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCC
Q psy12131         80 KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIP  144 (245)
Q Consensus        80 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p  144 (245)
                      .+.|++++..+....++.+.  .....|.|.++..+|.|.|+|.|.|..|.....+.|.+...++
T Consensus       225 ~v~W~~~g~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  287 (291)
T 2wim_A          225 AISWFRNGKLIEENEKYILK--GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH  287 (291)
T ss_dssp             EEEEEETTEECCCTTTEEEC--STTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC-----
T ss_pred             eEEEEECCEECcCCccEEEc--CCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEecc
Confidence            99999999998877666543  2346899999999999999999999999999999888765444

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.83  E-value=4.9e-19  Score=131.41  Aligned_cols=141  Identities=19%  Similarity=0.231  Sum_probs=109.2

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe----cCCeEEeecceEEecCCCeEEEEEEEee-cC
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVYA-NP   77 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~   77 (245)
                      ++.+.. +..|.|.+++.+|+|.|+|.+.+......+..+.|.|.    .+|.+...+....+..|+.+.|.|.+.+ .|
T Consensus       137 ~~~~~~-~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p  215 (289)
T 3ejj_X          137 VYFFSP-WRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEV  215 (289)
T ss_dssp             CEEEET-TTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSS
T ss_pred             cEEECC-CCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCC
Confidence            444443 45699999999999999999995433336778888888    6788888887777789999999999998 78


Q ss_pred             CCeEEEEECCEEeccCCcEEEEe--cCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCC
Q psy12131         78 PAKVEWFRDGTAITLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIP  144 (245)
Q Consensus        78 ~~~~~w~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p  144 (245)
                      .+.+.|++++..+..........  ....+.|.|.++..+|.|.|+|.|.|..|.....+.|.+.+.+.
T Consensus       216 ~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~~  284 (289)
T 3ejj_X          216 GFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHH  284 (289)
T ss_dssp             CCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC----
T ss_pred             ceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEeccc
Confidence            89999999998776532221110  01246899999999999999999999999999999988765543

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.83  E-value=7.8e-19  Score=123.04  Aligned_cols=181  Identities=17%  Similarity=0.223  Sum_probs=126.3

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC-CcEEEE-ecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .++.+. ..+....|.|.++...|.|.|+|.+.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence            3677877777888999999999999999999999999999887654 344443 24455689999999999999999999


Q ss_pred             eCCceeEEEEEEEecCCC----Ccc-c--cCccccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCC
Q psy12131        126 NNLGSSQQFIQLSGIPNI----PVF-Q--KSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGS  196 (245)
Q Consensus       126 n~~g~~~~~~~~~~~~~~----p~~-~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  196 (245)
                      |..|.....+.+.+...|    |.. .  .......+..+.|.|.+.+.++. . ..|+++..  .......+....   
T Consensus        83 n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~-i~W~~~~~~~~~~~~~~~~~~~---  157 (197)
T 2j8h_A           83 NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDP-V-ITWQKGQDLIDNNGHYQVIVTR---  157 (197)
T ss_dssp             ETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCC-E-EEEEESSCEECSSSSCEEEECS---
T ss_pred             ECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCC-c-EEEEECCEEeecCCCEEEEEcC---
Confidence            998887776666553221    111 1  11234568899999999765433 2 23444432  111111111111   


Q ss_pred             CCcceeeeEEEecC-CCCCceEEEEEEEEecCCCCCCCcceEE
Q psy12131        197 LAGPIYTQSYNITG-LQLFTQYEASVLAKNRFGWSRPSKAYVF  238 (245)
Q Consensus       197 ~~~~~~~~~~~i~~-l~~~~~y~~~v~a~N~~G~~~~s~~~~~  238 (245)
                           ....+.|.+ +...+.+.|+|.|.|..|....+..+.|
T Consensus       158 -----~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  195 (197)
T 2j8h_A          158 -----SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV  195 (197)
T ss_dssp             -----SEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             -----CceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEE
Confidence                 125788888 9999999999999999998655555554

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.83  E-value=2.6e-22  Score=167.88  Aligned_cols=219  Identities=14%  Similarity=0.241  Sum_probs=0.0

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEe
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAI   90 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~   90 (245)
                      +.|.|.++  +|+|.|+|.|.|..|. ....+.|.|..+|.+...+. ..+.+|+.+.|.|.+.+.|.+.+.|++++..+
T Consensus       515 ~~L~i~~~--~d~G~Y~C~a~N~~g~-~~~~~~l~V~~~p~i~~~p~-~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~  590 (772)
T 3v2a_R          515 STLVIQAA--NVSALYKCEAVNKVGR-GERVISFHVTRGPEITLQPD-MQPTEQESVSLWCTADRSTFENLTWYKLGPQP  590 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEeec--ccCeEEEEEEEccccc-cceeEEEEEECCceeeccCC-cccccCCceEEEEeccCCCCCCcEEEEcCCcc
Confidence            45888877  7999999999999887 57778888988888766654 34678999999999999999999999987654


Q ss_pred             ccCCcEEE--------------------EecCceeEEEEccCCCCCCeEEEEEEEeCCceeE--EEEEEEec-CCCCccc
Q psy12131         91 TLGGRIDM--------------------HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ--QFIQLSGI-PNIPVFQ  147 (245)
Q Consensus        91 ~~~~~~~~--------------------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~--~~~~~~~~-~~~p~~~  147 (245)
                      ........                    ........|.|.++..+|.|.|.|.|.|..+...  ....+.+. ..+|.+.
T Consensus       591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~  670 (772)
T 3v2a_R          591 LPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTIT  670 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEee
Confidence            33211110                    1111234599999999999999999999654332  22233321 2344433


Q ss_pred             cC---ccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEE
Q psy12131        148 KS---SRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAK  224 (245)
Q Consensus       148 ~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~  224 (245)
                      ..   .....++.+.|.|.+.+.++. .+ .|+++...-..-..+.....        ...+.|.++...+.+.|+|.|.
T Consensus       671 ~~~~~~~v~~g~~~~l~C~~~g~P~p-~v-~W~k~g~~l~~~~~~~~~~~--------~~~L~I~~v~~~D~G~Y~C~a~  740 (772)
T 3v2a_R          671 GNLENQTTSIGESIEVSCTASGNPPP-QI-MWFKDNETLVEDSGIVLKDG--------NRNLTIRRVRKEDEGLYTCQAC  740 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCceEEeCCCCEEEEEEeCccCCC-eE-EEEECCeECcCCCCeEEcCC--------CcEEEECcCCHHHCEEEEEEEE
Confidence            22   234668899999999776443 22 34554330000001111111        1568888999999999999999


Q ss_pred             ecCCCCCCCcceEEecCCC
Q psy12131        225 NRFGWSRPSKAYVFATEGA  243 (245)
Q Consensus       225 N~~G~~~~s~~~~~~t~~~  243 (245)
                      |.+|....+..+.|...|+
T Consensus       741 N~~G~~~~~~~l~V~~~p~  759 (772)
T 3v2a_R          741 SVLGCAKVEAFFIIEGAQE  759 (772)
T ss_dssp             -------------------
T ss_pred             eCCcceeEEEEEEEECCCC
Confidence            9999999888888877665

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.83  E-value=2.5e-19  Score=133.07  Aligned_cols=129  Identities=21%  Similarity=0.363  Sum_probs=105.5

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCC-ceeeEEEEEEecCCeEEeecc--eEEecCCCeEEEEEEEeecCCCeEEEEEC
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIYPPEVSVEKQ--WIHTAPDMRAEIICNVYANPPAKVEWFRD   86 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~~~~~~~w~~~   86 (245)
                      +..|.|.+++.+|+|.|+|.+.|..+. .....+.|.|..+|.+...+.  ...+..|+.+.|.|.+.|.|.|.+.|+++
T Consensus       154 ~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~  233 (291)
T 1qz1_A          154 NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD  233 (291)
T ss_dssp             TSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEET
T ss_pred             CCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEEC
Confidence            446999999999999999999987533 345678888888888776543  45678899999999999999999999999


Q ss_pred             CEEeccCC----cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131         87 GTAITLGG----RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus        87 ~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      +..+....    ++..  ....+.|.|.++..+|.|.|+|.|.|..|.....+.|.+.
T Consensus       234 g~~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  289 (291)
T 1qz1_A          234 GEPIENEEEDDEKHIF--SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF  289 (291)
T ss_dssp             TEECCCC--CCSSEEE--CTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEECcCCCCCCcceEE--cCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEE
Confidence            99887653    3322  2345689999999999999999999999998888887764

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.83  E-value=1.5e-19  Score=128.44  Aligned_cols=134  Identities=16%  Similarity=0.152  Sum_probs=94.6

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec--CCeEEeec-ceEEecCCCeEEEEEEEeecCC--CeEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY--PPEVSVEK-QWIHTAPDMRAEIICNVYANPP--AKVEWF   84 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~~--~~~~w~   84 (245)
                      ...|.|.+++.+|+|.|+|.|.+..+...+..+.|.|..  +|.+...+ ..+.+.+|+.+.|.|.+.|.|.  +.+.|+
T Consensus        63 ~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~  142 (213)
T 2x1w_L           63 KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWE  142 (213)
T ss_dssp             TTEEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEE
T ss_pred             CccEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEE
Confidence            456999999999999999999986444344457777754  34444443 3447889999999999998654  479999


Q ss_pred             ECCEEeccCCc-EEEEe-------cCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCC
Q psy12131         85 RDGTAITLGGR-IDMHV-------SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNI  143 (245)
Q Consensus        85 ~~~~~~~~~~~-~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~  143 (245)
                      +++..+..... .....       ....+.|.|.++..+|.|.|.|.|.|..|.....+.|.+...|
T Consensus       143 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p  209 (213)
T 2x1w_L          143 YPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP  209 (213)
T ss_dssp             CSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred             ecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence            98765322111 00000       1124579999999999999999999999998888888876433

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.83  E-value=1.7e-19  Score=134.03  Aligned_cols=138  Identities=16%  Similarity=0.187  Sum_probs=106.2

Q ss_pred             ceEEEeecceEEEeccCCCCCE-EEEEEEEcCCCCceeeEEEEEEe----cCCeEEeecceEEecCCCeEEEEEEEeecC
Q psy12131          3 EIELLYNRESLDLDRVTLKLAG-LYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVYANP   77 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~   77 (245)
                      ++.+..+ ..|.|.+++.+|+| .|+|.|.|..+...+..+.|.|.    .+|.+...+....+..|+.+.|.|.+.+.|
T Consensus       138 ~~~~~~~-~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p  216 (290)
T 2o26_X          138 TFVPNPK-AGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVS  216 (290)
T ss_dssp             EEEEETT-TEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESS
T ss_pred             ceeeCCC-CCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCC
Confidence            3344433 46999999999999 99999999855434556788877    688887776666888999999999999999


Q ss_pred             CCe-EEEEECCEEe----ccCCcEEEE---ecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecC
Q psy12131         78 PAK-VEWFRDGTAI----TLGGRIDMH---VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIP  141 (245)
Q Consensus        78 ~~~-~~w~~~~~~~----~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~  141 (245)
                      .|. +.|++++..+    .........   .....+.|.|.++...|.|.|.|.|.|..|.....+.|.+..
T Consensus       217 ~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  288 (290)
T 2o26_X          217 TSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE  288 (290)
T ss_dssp             TTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             cceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEe
Confidence            996 9999988663    222222221   112356899999999999999999999999998888877653

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.82  E-value=7.4e-20  Score=125.98  Aligned_cols=120  Identities=13%  Similarity=0.183  Sum_probs=91.8

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCe
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAK   80 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~   80 (245)
                      +|+.+..+++ |.|.+++.+|+|.|+|.+.|..|.. .+..+.|.|..++..   + .+ ...+..+.|.|.+.+.|.|.
T Consensus        53 ~r~~~~~~gs-L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~~---p-~i-~~~~~~v~L~C~~~g~p~p~  126 (176)
T 1hng_A           53 GAFEILANGD-LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSK---P-MI-YWECSNATLTCEVLEGTDVE  126 (176)
T ss_dssp             TTEEECTTSC-EEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCCC---C-EE-EEETTTTEEEEECSSCSSCE
T ss_pred             CeEEECCCCc-EEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCCC---C-EE-EecCCcEEEEEEecCCCCcE
Confidence            4667755554 9999999999999999999998874 467788888764321   1 11 12244589999999999999


Q ss_pred             EEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131         81 VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus        81 ~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      +.|++++..+....+           +.|..+..+|.|.|+|.|.|..|.......+.
T Consensus       127 i~W~~~g~~l~~~~~-----------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~  173 (176)
T 1hng_A          127 LKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVN  173 (176)
T ss_dssp             EEEEETTEEEEEESS-----------SEEEEECSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred             EEEEECCEECCCCCc-----------EEEEEEEccCCeEEEEEEEecCCCceeccccc
Confidence            999999988765432           33446778999999999999999887766554

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.82  E-value=3.2e-19  Score=125.31  Aligned_cols=133  Identities=20%  Similarity=0.247  Sum_probs=102.1

Q ss_pred             eEEEeecceEEEeccCCCCCEEEEEEEEcCCCCce--eeEEEEEEe-------cCCeEEeecceEEecCCCeEEEEEEEe
Q psy12131          4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGEST--SKNFIVNVI-------YPPEVSVEKQWIHTAPDMRAEIICNVY   74 (245)
Q Consensus         4 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~~l~v~-------~~p~~~~~~~~~~~~~g~~~~l~C~~~   74 (245)
                      ..+...+..|.|.+++.+|+|.|+|.+.+..+...  ...+.+.+.       .+|.+...+....+..|+.+.|.|.+.
T Consensus        59 ~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~  138 (201)
T 3s97_C           59 RFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFAL  138 (201)
T ss_dssp             EEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEE
T ss_pred             eEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEcc
Confidence            34444566799999999999999999998665422  233444443       355566555567788999999999999


Q ss_pred             ecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131         75 ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus        75 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      +.|.|.+.|++++..+.....+  ..  ....|.|.++..+|.|.|+|.+.|..|.....+.|.+.
T Consensus       139 g~p~p~v~W~~~~~~~~~~~~~--~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          139 GNPVPDIRWRKVLEPMPSTAEI--ST--SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             EESCCEEEEEETTBCCCTTCEE--ET--TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCCCceEEEeCCCcCCCceee--cC--CCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            9999999999999876644222  21  34589999999999999999999999998887777653

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.82  E-value=5.4e-19  Score=127.75  Aligned_cols=138  Identities=20%  Similarity=0.391  Sum_probs=104.8

Q ss_pred             EEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecC----CeEEe-ecceEEecCCCeEEEEEEEeecCCC
Q psy12131          5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP----PEVSV-EKQWIHTAPDMRAEIICNVYANPPA   79 (245)
Q Consensus         5 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~----p~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~   79 (245)
                      .+..+..+|.|.+++.+|+|.|+|.+.+..+. ....+.|.|...    |.+.. .+....+..|+.+.|.|.+.+.|.+
T Consensus        66 ~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p  144 (241)
T 3grw_A           66 KLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP  144 (241)
T ss_dssp             EEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCC
T ss_pred             eeeccceEEEEEeCCcccCEEEEEEEeecCCc-eEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCC
Confidence            45556678999999999999999999998776 567788888752    33322 2455667889999999999999999


Q ss_pred             eEEEEE----CCEEeccCCcEEEE--------ecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCC
Q psy12131         80 KVEWFR----DGTAITLGGRIDMH--------VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNI  143 (245)
Q Consensus        80 ~~~w~~----~~~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~  143 (245)
                      .+.|++    ++..+.........        .......|.|.++..+|.|.|+|.+.|..|.....+.|.+...|
T Consensus       145 ~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p  220 (241)
T 3grw_A          145 HIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPR  220 (241)
T ss_dssp             EEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC----
T ss_pred             EEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCC
Confidence            999999    77766544321111        11234679999999999999999999999999888888775433

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.82  E-value=5.5e-19  Score=126.13  Aligned_cols=131  Identities=18%  Similarity=0.179  Sum_probs=93.4

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEEC-CEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD-GTA   89 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~-~~~   89 (245)
                      .+|.|.+++.+|+|.|+|.+.+ .+. ....+.|.|..+|..........+..|+.+.|.|.+.|.|.|.+.|+++ +..
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~-~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~  157 (222)
T 3sbw_C           80 AALQITDVKLQDAGVYRCMISY-GGA-DYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQV  157 (222)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES-SSE-EEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCE
T ss_pred             EEEEEcCcccccCeEEEEEEEe-CCC-ceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCce
Confidence            4699999999999999999998 444 6778889998776543333223567899999999999999999999998 555


Q ss_pred             eccCCcEEEEe--cCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCC
Q psy12131         90 ITLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNI  143 (245)
Q Consensus        90 ~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~  143 (245)
                      +..........  .+.-....+..+...|.|.|+|.|.|..|.....+.+.+...|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p  213 (222)
T 3sbw_C          158 LSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELP  213 (222)
T ss_dssp             ECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC-
T ss_pred             ecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCc
Confidence            44322211111  1111111122345678999999999999998888888876444

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.82  E-value=1.2e-17  Score=125.36  Aligned_cols=226  Identities=13%  Similarity=0.072  Sum_probs=131.8

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCC-C-e--EEEEEC
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP-A-K--VEWFRD   86 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~-~--~~w~~~   86 (245)
                      +.|+|.+++..|+|.|+|.+.+..+. ..+.+.|.|..+|................+.+......... + .  +.+...
T Consensus        61 ~~L~i~~~~~~d~g~y~c~~~~~~~~-~~~~~~l~v~~~P~~P~~l~c~~~~~~~~~~~~W~~~~~~~~~~~Y~l~~~~~  139 (313)
T 2d9q_B           61 SIITLPHLNHTQAFLSCSLNWGNSLQ-ILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKS  139 (313)
T ss_dssp             EEEEESCCCSSEEEEEEEEESSSSEE-EEEEEEEEECCCCCCCEEEEEEEETTTTEEEEEEECCSCCSSCCEEEEEEEEC
T ss_pred             EEEEEeccCCCccceEEeeecCCCce-eEEEEEEccCCCCCCCccceeeECCCCccEEEEecCCCCCCCceeEEEEEEec
Confidence            56999999999999999988654333 45567777777765322211111101234444333211111 1 1  222111


Q ss_pred             CEEecc--CCcEEEEecCceeEEEEc--cCCCCCCeEEEEEEEeCCceeEE-EEEEE----ecCCCCccccCcccc----
Q psy12131         87 GTAITL--GGRIDMHVSSEKHSLLVR--HIKDTDFGNYMCQASNNLGSSQQ-FIQLS----GIPNIPVFQKSSRRL----  153 (245)
Q Consensus        87 ~~~~~~--~~~~~~~~~~~~~~l~i~--~~~~~d~g~y~C~~~n~~g~~~~-~~~~~----~~~~~p~~~~~~~~~----  153 (245)
                      +.....  ..............+.+.  .+.......+++.|.|..|.... .+.+.    +.|.||.........    
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~  219 (313)
T 2d9q_B          140 RGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAP  219 (313)
T ss_dssp             CTTSCSCCCCEEEECCCTTCSEEEEEGGGCCSSSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEECCC------
T ss_pred             CCCcccCCcccccCCCCCCCcEEEECccccccceeEEEEEEEECCCCCccCccEEEehhheeccCcCceeEEEEeccccc
Confidence            110000  000001001112234443  47777788888999999987532 22221    346777655443221    


Q ss_pred             -CCCeeEEEEEeCC--CCCceEEEEEEE-eecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        154 -GPDGYRLVWQVDT--YSGIIQYLLKFR-EREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       154 -~~~~~~l~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                       ....+.|+|.++.  +...+.|.++|+ ... ...|..+......       ...+.+.+|.+++.|.|+|+|.|..|.
T Consensus       220 ~~~~~l~l~W~~p~~~~~~~l~Y~v~y~~~~~-~~~w~~~~~~~~~-------~~~~~l~~L~p~t~Y~~rVra~~~~g~  291 (313)
T 2d9q_B          220 PQAGCLQLSWEPWQPGLHINQKCELRHKPQRG-EASWALVGPLPLE-------ALQYELCGLLPATAYTLQIRCIRWPLP  291 (313)
T ss_dssp             -CCSCEEEEEECCGGGTTSCEEEEEEEEESSS-CCCCEEEEEECSC-------EEEEEECSCCSCCCEEEEEEEEECSSC
T ss_pred             CCCCeEEEEECCCCCCCceeEEEEEEEccCCC-CCCcEEcccccCc-------ceEEEEeCCCCCCeEEEEEEeeECCCC
Confidence             4578999999843  233579999999 443 6679765432221       267999999999999999999999877


Q ss_pred             C---CCCcceEEecCCCCC
Q psy12131        230 S---RPSKAYVFATEGAET  245 (245)
Q Consensus       230 ~---~~s~~~~~~t~~~~~  245 (245)
                      |   .+|..+.++|...+|
T Consensus       292 G~wS~wS~~~~~~T~~~~P  310 (313)
T 2d9q_B          292 GHWSDWSPSLELRTTERAA  310 (313)
T ss_dssp             CCCCCCCCCEEECCCC---
T ss_pred             CccCCCCCccceeCCccCC
Confidence            6   477889999988654

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.82  E-value=8.9e-20  Score=143.15  Aligned_cols=214  Identities=13%  Similarity=0.110  Sum_probs=126.8

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecC--CCeEEEEEC--
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP--PAKVEWFRD--   86 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~--   86 (245)
                      +.|.|.+++.+|+|.|+|.|.|..+. ......+.+..++.....+....+.+|+.+.|.|.+.|.|  .+.+.|+++  
T Consensus       181 ~~L~i~~~~~~d~G~Y~C~a~n~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~  259 (438)
T 1qgc_4          181 STLTLTKDEYERHNSYTCEATHKTST-SPIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTP  259 (438)
T ss_dssp             EEEEEEHHHHHTCCEEEEEEEETTCS-SCEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEET
T ss_pred             EEEEEeCcccCCCCeEEEEEEecccC-CceecccccccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCC
Confidence            46999999999999999999998766 2233333222222223344556788999999999999988  579999985  


Q ss_pred             CEEec-----------------cCCcEEEEec--CceeEEEEccCCCCCCeEEEEEEEeCCc-----ee--EEEEEEEec
Q psy12131         87 GTAIT-----------------LGGRIDMHVS--SEKHSLLVRHIKDTDFGNYMCQASNNLG-----SS--QQFIQLSGI  140 (245)
Q Consensus        87 ~~~~~-----------------~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g-----~~--~~~~~~~~~  140 (245)
                      +..+.                 ...++.+...  .....|.|.++..+|.|.|.|.+.|..+     ..  ...+.+...
T Consensus       260 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~  339 (438)
T 1qgc_4          260 EKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAA  339 (438)
T ss_dssp             TTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSS
T ss_pred             CCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecC
Confidence            43221                 1245554432  3356899999999999999999998443     11  223333322


Q ss_pred             C-CCCcccc---CccccCCCeeEEEEEeCCC-CCceEEEEEEEeecCCCCeEEEeeCCCCCCCcce-eeeEEEecCCCCC
Q psy12131        141 P-NIPVFQK---SSRRLGPDGYRLVWQVDTY-SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPI-YTQSYNITGLQLF  214 (245)
Q Consensus       141 ~-~~p~~~~---~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~  214 (245)
                      + .+|.+..   ......++.+.|.|.+.+. +....+. |+++.. ...-.  ...... ..+.. ....+.|......
T Consensus       340 ~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~-W~~~g~-~~~~~--~~~~~~-~~g~~~~~s~L~i~~~~~~  414 (438)
T 1qgc_4          340 KTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVT-WNSGSL-SSGVH--TFPAVL-QSDLYTLSSSVTVPSSTWP  414 (438)
T ss_dssp             CCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEE-EGGGTC-CSSEE--ECCCEE-ETTEEEEEEEEEEEEEHHH
T ss_pred             CCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEE-EecCCC-CCcee--ecCccc-cCCcEEEEEEEEEehhhcC
Confidence            2 2332211   1234578999999999765 3222332 444322 11100  000000 00111 1124666666533


Q ss_pred             ceEEEEEEEEecCCCCC
Q psy12131        215 TQYEASVLAKNRFGWSR  231 (245)
Q Consensus       215 ~~y~~~v~a~N~~G~~~  231 (245)
                      + +.|+|.|.|..|...
T Consensus       415 d-g~Y~C~a~n~~g~~~  430 (438)
T 1qgc_4          415 S-ETVTCNVAHPASSTK  430 (438)
T ss_dssp             H-SCCEEEEEEGGGTEE
T ss_pred             C-ceEEEEEEeCCCCcc
Confidence            3 555666999998643

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.82  E-value=8.1e-18  Score=117.22  Aligned_cols=175  Identities=13%  Similarity=0.133  Sum_probs=120.0

Q ss_pred             cCCeEEeecceEEecC-CCeEEEEEEEeecCC--CeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEE
Q psy12131         48 YPPEVSVEKQWIHTAP-DMRAEIICNVYANPP--AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA  124 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~-g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  124 (245)
                      .+|.+...+. ..+.+ |+.+.|.|.+.+.+.  +.+.|++++..+.......     ....|.|.++..+|.|.|.|.+
T Consensus         2 ~~P~i~~~~~-~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~   75 (190)
T 2wv3_A            2 NEPRIVTSEE-VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYHCVY   75 (190)
T ss_dssp             -CCEEEECCC-EECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCcccccce-EEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEEEEE
Confidence            4677766554 44455 999999999999887  7899999999887654321     4568999999999999999999


Q ss_pred             EeCCceeEEEEEEEecCCCCcccc--CccccCCCeeEEEEEeCCCCCceEEEEEEEeec-------CCCCeEEEeeCCCC
Q psy12131        125 SNNLGSSQQFIQLSGIPNIPVFQK--SSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE-------ELTPWRNIVIPSDG  195 (245)
Q Consensus       125 ~n~~g~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~  195 (245)
                      .|. +.....+.+.+...|.....  ......+..+.|.|.+.+.++. .+ .|++...       .......+....  
T Consensus        76 ~n~-~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p-~i-~W~~~~~g~~~~~~~~~~~~~~~~~~--  150 (190)
T 2wv3_A           76 HFV-SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHP-EW-MWRKKENGVFEEISNSSGRFFIINKE--  150 (190)
T ss_dssp             EET-TEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCC-EE-EEEEEETTEEEECCCTTSCEEEEECS--
T ss_pred             EeC-CcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCC-ce-EEEEcCCCceeeeecCCCeEEEecCC--
Confidence            999 77777777776543322211  1235678899999999766443 33 3444321       001111111100  


Q ss_pred             CCCcceeeeEEEecCCC-CCceEEEEEEEEecCCCCCCCcceEEe
Q psy12131        196 SLAGPIYTQSYNITGLQ-LFTQYEASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       196 ~~~~~~~~~~~~i~~l~-~~~~y~~~v~a~N~~G~~~~s~~~~~~  239 (245)
                            ....+.|.++. ..+.+.|+|.|.|..|....+..+.++
T Consensus       151 ------~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          151 ------NYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             ------SEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ------CeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence                  12468899998 788999999999999987666555553

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.82  E-value=4.8e-17  Score=121.61  Aligned_cols=209  Identities=17%  Similarity=0.171  Sum_probs=134.2

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCce--eeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGEST--SKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGT   88 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~   88 (245)
                      +.|.|.+++..| |.|+|.|.+. |...  ...+.|.+..+|.             ....|.|...+.....+.|.....
T Consensus        65 ~~L~i~~~~~~~-g~Y~C~a~~~-g~~~~~~~~~~l~v~~~P~-------------~P~~l~~~~~~~~~v~l~W~~~~~  129 (303)
T 1i1r_A           65 SSVTFTDIASLN-IQLTCNILTF-GQLEQNVYGITIISGLPPE-------------KPKNLSCIVNEGKKMRCEWDGGRE  129 (303)
T ss_dssp             EEEEECSCCCSE-EEEEEEEEET-TTEEEEEEEEEEEEECCCC-------------CCEEEEEEEETTSCCEEEEECCSC
T ss_pred             EEEEEcCcCCCc-eEEEEecccC-CCcceEEEEEEEeccCCCC-------------CCeeeEEEECCCCcEEEEccCCCC
Confidence            469999999985 9999999874 4321  2334455555543             223344554433344555543211


Q ss_pred             EeccCCcEEEE-------------ecCceeEEEEccC-CCCCCeEEEEEEEeCCceeEE-EEEEE----ecCCCCccccC
Q psy12131         89 AITLGGRIDMH-------------VSSEKHSLLVRHI-KDTDFGNYMCQASNNLGSSQQ-FIQLS----GIPNIPVFQKS  149 (245)
Q Consensus        89 ~~~~~~~~~~~-------------~~~~~~~l~i~~~-~~~d~g~y~C~~~n~~g~~~~-~~~~~----~~~~~p~~~~~  149 (245)
                      .-. ...+.+.             .......+.|..+ .+.....+++.|.|..|.... .+.+.    ..|.||.....
T Consensus       130 ~~~-~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~~~~~~~~~~~~p~pP~~~~v  208 (303)
T 1i1r_A          130 THL-ETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSV  208 (303)
T ss_dssp             CSS-CCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGGEECCCCEEEEE
T ss_pred             CCC-CcCEEEEEEecCCCCccCCCcCCCceEEEECCcCcccccEEEEEEEEcCCCCcccCCEEECHHHeEecCCCcceEE
Confidence            100 0112211             1122346788888 777788899999999987643 22221    35667765543


Q ss_pred             cc-ccCCCeeEEEEEeC--CCCCceEEEEEEEeecCCCCeEEEeeC--CCCCCCcceeeeEEEecCCCCCceEEEEEEEE
Q psy12131        150 SR-RLGPDGYRLVWQVD--TYSGIIQYLLKFREREELTPWRNIVIP--SDGSLAGPIYTQSYNITGLQLFTQYEASVLAK  224 (245)
Q Consensus       150 ~~-~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~  224 (245)
                      .. .....++.|+|.++  .++++.+|.|+|+... ...|..+...  ...       ...+.+.+|.+++.|.|+|+|.
T Consensus       209 ~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~y~~~~-~~~w~~~~~~~~~~~-------~~~~~l~~L~p~t~Y~~rV~A~  280 (303)
T 1i1r_A          209 INSEELSSILKLTWTNPSIKSVIILKYNIQYRTKD-ASTWSQIPPEDTAST-------RSSFTVQDLKPFTEYVFRIRCM  280 (303)
T ss_dssp             ECCSSSSSCEEEEEECCGGGGTSCEEEEEEEEETT-CSSCEECCGGGGCSC-------CSEEEECSCCTTCEEEEEEEEE
T ss_pred             EEecCCCCEEEEEECCCCCCCcccEEEEEEEEeCC-CCCceEEccccCCCc-------eeEEEeCCCCCCCEEEEEEEec
Confidence            21 13567999999983  3467899999999875 6678765431  111       2679999999999999999999


Q ss_pred             ecCCCCCC---CcceEEecCCC
Q psy12131        225 NRFGWSRP---SKAYVFATEGA  243 (245)
Q Consensus       225 N~~G~~~~---s~~~~~~t~~~  243 (245)
                      |..|.|.+   |..+.++|.++
T Consensus       281 n~~G~G~~S~wS~~~~~~T~e~  302 (303)
T 1i1r_A          281 KEDGKGYWSDWSEEASGITYED  302 (303)
T ss_dssp             ETTSCSCCCCCCCCEEEECCCC
T ss_pred             cCCCCCCcCCCCCccceeCCcC
Confidence            99997665   56788888764

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.82  E-value=8e-19  Score=125.05  Aligned_cols=122  Identities=21%  Similarity=0.305  Sum_probs=101.6

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecC---------------CeEEeecceEEecCCCeEEEEEEEe
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP---------------PEVSVEKQWIHTAPDMRAEIICNVY   74 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---------------p~~~~~~~~~~~~~g~~~~l~C~~~   74 (245)
                      +..|.|.+++.+|+|.|+|.+.+..+...+..+.|.|...               |.+...+....+..|+.+.|.|.+.
T Consensus        64 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~  143 (218)
T 3k0w_A           64 TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAV  143 (218)
T ss_dssp             SSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEE
T ss_pred             CCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEec
Confidence            4579999999999999999999987764567788888765               5666667777888999999999999


Q ss_pred             ecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCce-eEEEEEEEec
Q psy12131         75 ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS-SQQFIQLSGI  140 (245)
Q Consensus        75 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~-~~~~~~~~~~  140 (245)
                      +.|.+.+.|++++..+....         ...|.|.++...|.|.|+|.+.|..|. ....+.|.+.
T Consensus       144 g~p~~~v~W~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  201 (218)
T 3k0w_A          144 GSPIPHYQWFKNELPLTHET---------KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID  201 (218)
T ss_dssp             BSSCCEEEEEETTEECTTCC---------SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             ccCCCeEEEEECCEECCCCC---------CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEe
Confidence            99999999999998876543         247999999999999999999998876 4445555554

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.82  E-value=5.4e-19  Score=139.52  Aligned_cols=167  Identities=13%  Similarity=0.078  Sum_probs=109.2

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCC---------C--ceeeEEEEEEec----CCeEEeecceEEec
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIG---------E--STSKNFIVNVIY----PPEVSVEKQWIHTA   62 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~---------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~   62 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|+|.+.+..|         .  .....+.|.|..    +|.+...+....+.
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~  145 (457)
T 1hzh_H           66 DRVTFTADTSANTAYMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKST  145 (457)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCC
T ss_pred             CceEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCcccccc
Confidence            46776643    24799999999999999999998765         1  123445677764    56655444334467


Q ss_pred             CCCeEEEEEEEeec-CC-CeEEEEECCEEeccCCcEEEEecCc----eeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         63 PDMRAEIICNVYAN-PP-AKVEWFRDGTAITLGGRIDMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        63 ~g~~~~l~C~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      .|+.+.|.|.+.+. |. +.+.|++++..+...........+.    .+.|.|..+..+| |.|.|.+.|..+.......
T Consensus       146 ~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~  224 (457)
T 1hzh_H          146 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK  224 (457)
T ss_dssp             TTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEE
T ss_pred             CCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEE
Confidence            89999999999987 64 7999999885432111111111111    2478999999889 9999999998776544444


Q ss_pred             EEecC----------------CCCcc-ccCc---c-ccCCCeeEEEEEeCCCCC
Q psy12131        137 LSGIP----------------NIPVF-QKSS---R-RLGPDGYRLVWQVDTYSG  169 (245)
Q Consensus       137 ~~~~~----------------~~p~~-~~~~---~-~~~~~~~~l~~~~~~~~~  169 (245)
                      +....                .+|.. ....   . ...|+.+.|.|.+.+.+|
T Consensus       225 v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p  278 (457)
T 1hzh_H          225 AEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSH  278 (457)
T ss_dssp             CCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCT
T ss_pred             ecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccC
Confidence            33210                12322 1111   1 356889999999976543

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.81  E-value=3e-19  Score=134.19  Aligned_cols=129  Identities=19%  Similarity=0.214  Sum_probs=103.9

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEecCCeEEeec-ceEEecCCCeEEEEEEEeecCCC-eEEEEECC
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEK-QWIHTAPDMRAEIICNVYANPPA-KVEWFRDG   87 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~   87 (245)
                      +.|.|.++..+|.|.|+|.|.|..+.. ....+.|.|..+|.+...+ ....+..|+.+.|.|.+.|.|.| .+.|++++
T Consensus       177 s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~  256 (313)
T 4fqp_A          177 SLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTM  256 (313)
T ss_dssp             EEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETT
T ss_pred             eeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECC
Confidence            358899999999999999999976653 5567778888889876543 34456678999999999999998 69999999


Q ss_pred             EEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCc
Q psy12131         88 TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPV  145 (245)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~  145 (245)
                      ..+....  ..    ....|.|.++...|.|.|.|.|.|..|.....+.|.+...||.
T Consensus       257 ~~l~~~~--~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~PP~  308 (313)
T 4fqp_A          257 GPLPPFA--VA----QGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGPPH  308 (313)
T ss_dssp             BSCCTTE--EE----ETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC--
T ss_pred             EECCCce--EE----eCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCCCC
Confidence            8775432  11    1247999999999999999999999999999999988877774

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.81  E-value=1e-17  Score=117.19  Aligned_cols=175  Identities=16%  Similarity=0.201  Sum_probs=119.9

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEe-ecCCCeEEEEECCEEeccCC--cEEEEecCc-------eeEEEEccCCCCCCe
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGG--RIDMHVSSE-------KHSLLVRHIKDTDFG  118 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~-------~~~l~i~~~~~~d~g  118 (245)
                      +|.+...+....+.+|+.+.|.|.+. +.|.+.+.|++++..+....  ++.+.....       ...|.|.++...|.|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            67777888888999999999999999 99999999999999887653  333333222       468999999999999


Q ss_pred             EEEEEEEeCCceeEE-EEEEEecCCCCccccC---ccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCC
Q psy12131        119 NYMCQASNNLGSSQQ-FIQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSD  194 (245)
Q Consensus       119 ~y~C~~~n~~g~~~~-~~~~~~~~~~p~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (245)
                      .|.|.+.|..|.... .+.+.+... |.+...   .....++.+.|.|.+.+.++...+ .|+++...-.      ....
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~~-p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v-~W~~~~~~~~------~~~~  153 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEGL-PYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDL-LWLQDAVPLA------TAPG  153 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECCS-CEEEECCCCEEECTTCCEEEEEEEECSSCCCEE-EEEESSCBSS------SSTT
T ss_pred             EEEEEEEeCCCceecccEEEEEecC-CeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEE-EEEECCEecc------CCCC
Confidence            999999998776443 255555433 332221   234668899999999776443233 3555433000      0000


Q ss_pred             CCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC-CCcceEE
Q psy12131        195 GSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR-PSKAYVF  238 (245)
Q Consensus       195 ~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~-~s~~~~~  238 (245)
                      .     .....+.|.++.+.  +.|+|.|.|..|... .+..+.+
T Consensus       154 ~-----~~~~~L~i~~~~d~--G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          154 H-----GPQRSLHVPGLNKT--SSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             S-----SCCEEEEECCCSSC--EEEEEEEEETTEEEECCCEEEEE
T ss_pred             c-----CCCCeEEEcccccC--ceEEEEEEcCCCceEEEEEEEEE
Confidence            0     11267888888854  566667999999874 5555655

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.81  E-value=3.4e-18  Score=118.52  Aligned_cols=123  Identities=21%  Similarity=0.373  Sum_probs=101.3

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecC-CCeEEEEE---CC
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFR---DG   87 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~w~~---~~   87 (245)
                      .|.|.  +.+|+|.|+|.+.+.    ....+.|.|..+|.+...+....+..|+.+.|.|.+.+.| .+.+.|++   ++
T Consensus        52 ~l~i~--~~~d~G~Y~C~~~n~----~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~  125 (184)
T 3b5h_A           52 EFKVD--SDDQWGEYSCVFLPE----PMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSE  125 (184)
T ss_dssp             EEEEC--GGGCCEEEEEEEEST----TSCEEEEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSS
T ss_pred             EEEEe--chhhCeEEEEEEECC----cCcEEEEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCC
Confidence            35555  689999999999982    3467788999999988888777889999999999999999 79999999   44


Q ss_pred             E-Eecc--CCcEEEEecCceeEEEEccCC-CCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131         88 T-AITL--GGRIDMHVSSEKHSLLVRHIK-DTDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus        88 ~-~~~~--~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      . .+..  ..++.+...+..+.|.|.++. .+|.|.|.|.|.|..|.....+.|.+.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          126 DKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             CEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence            4 3432  246666666667899999999 899999999999999998888777664

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.81  E-value=7.6e-19  Score=146.99  Aligned_cols=215  Identities=14%  Similarity=0.096  Sum_probs=92.2

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecC--CeEEeec-ceEEecCCCeEEEEEEEeec--CCCeEE
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP--PEVSVEK-QWIHTAPDMRAEIICNVYAN--PPAKVE   82 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~--p~~~~~~-~~~~~~~g~~~~l~C~~~~~--~~~~~~   82 (245)
                      .....|.|.+++.+|+|.|+|.+.+......+..+.+.+..+  |.+...+ ....+..|+.+.|.|.+.+.  +.+.+.
T Consensus       180 ~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~  259 (772)
T 3v2a_R          180 DSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN  259 (772)
T ss_dssp             ETTTEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEE
T ss_pred             CCCCCeEecCCChhhCeEEEEEEEECCceEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEE
Confidence            345669999999999999999999764432333455555433  3333333 33678899999999999884  456899


Q ss_pred             EEECCEEeccCCcEEE--------EecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCccc-----cC
Q psy12131         83 WFRDGTAITLGGRIDM--------HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQ-----KS  149 (245)
Q Consensus        83 w~~~~~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~-----~~  149 (245)
                      |++++..+........        ......+.|.|.++..+|.|.|+|.+.|..+.....+.+.+...|....     ..
T Consensus       260 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~  339 (772)
T 3v2a_R          260 WEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESL  339 (772)
T ss_dssp             EECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC----------
T ss_pred             EecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCc
Confidence            9998876544322211        0112346899999999999999999999988777777766654332211     12


Q ss_pred             ccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        150 SRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      .....++.+.|.|.+.+.++. .+. |+++.. .... .....         ....+.|..+...+.+.|+|.|.|..|.
T Consensus       340 ~~v~~G~~v~l~C~~~~~p~~-~v~-W~~~g~-~l~~-~~~~~---------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~  406 (772)
T 3v2a_R          340 VEATVGERVRIPAKYLGYPPP-EIK-WYKNGI-PLES-NHTIK---------AGHVLTIMEVSERDTGNYTVILTNPISK  406 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEcCCCcEEEEEEEeeeCCC-eEE-EEECCE-eCCC-CceEc---------cceeEEEecCChhcCceEEEEEEECCcC
Confidence            335678899999999765433 222 444432 0000 00010         1156778888888888889999999997


Q ss_pred             CCCCcc
Q psy12131        230 SRPSKA  235 (245)
Q Consensus       230 ~~~s~~  235 (245)
                      ...+..
T Consensus       407 ~~~s~~  412 (772)
T 3v2a_R          407 EKQSHV  412 (772)
T ss_dssp             ------
T ss_pred             eEEEEE
Confidence            655443

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.80  E-value=1.8e-18  Score=136.26  Aligned_cols=191  Identities=9%  Similarity=0.059  Sum_probs=121.5

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCc-------eeeEEEEEEecC----CeEEeecceEEecCCCeEEEEEEEeec-C-
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGES-------TSKNFIVNVIYP----PEVSVEKQWIHTAPDMRAEIICNVYAN-P-   77 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-------~~~~~~l~v~~~----p~~~~~~~~~~~~~g~~~~l~C~~~~~-~-   77 (245)
                      ..|.|.+++.+|+|.|+|.|.|..|..       .+....|.|...    |.+...   ..+.+|+.+.|.|.+.|. | 
T Consensus       142 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~---~~v~~G~~v~l~C~~~g~~P~  218 (450)
T 1z7z_I          142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP---RVLEVDTQGTVVCSLDGLFPV  218 (450)
T ss_dssp             EEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECC---SEEETTSEEEEEEEEESCTTG
T ss_pred             eEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCc---eeEEeCCcEEEEEEeeCCCCC
Confidence            469999999999999999999986631       124455555533    322211   467799999999999998 6 


Q ss_pred             -CCeEEEEECCEEeccCCcEEEEecCceeEEE-EccCCCCCCe--EEEEEEEeCCceeEEEEEEEecCC-CCccc-cCcc
Q psy12131         78 -PAKVEWFRDGTAITLGGRIDMHVSSEKHSLL-VRHIKDTDFG--NYMCQASNNLGSSQQFIQLSGIPN-IPVFQ-KSSR  151 (245)
Q Consensus        78 -~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~-i~~~~~~d~g--~y~C~~~n~~g~~~~~~~~~~~~~-~p~~~-~~~~  151 (245)
                       .+.+.|++++..+..  .....  +....+. ..++..+|.|  .|.|.+.|..|.......+.+... +|.+. ....
T Consensus       219 ~~~~~~W~~~~~~~~~--~~~~~--~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~~~~  294 (450)
T 1z7z_I          219 SEAQVHLALGDQRLNP--TVTYG--NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPE  294 (450)
T ss_dssp             GGCEEEEEETTEECCC--EEEEE--TTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSE
T ss_pred             CceEEEEeCCCEeCCc--eEEec--CCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecCCee
Confidence             689999999987765  22222  2222221 2267889999  999999999988766665554421 23332 2234


Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG  228 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G  228 (245)
                      ...++.+.|.|.+. ..|...    | +..   ..   .....        ...+.|..+...+.+.|+|.|.|..|
T Consensus       295 v~~G~~v~l~C~~~-p~p~i~----W-~g~---~~---~~~~~--------~~~L~i~~~~~~d~G~Y~C~a~n~~~  351 (450)
T 1z7z_I          295 VSEGTEVTVKCEAH-PRAKVT----L-NGV---PA---QPLGP--------RAQLLLKATPEDNGRSFSCSATLEVA  351 (450)
T ss_dssp             EETTCEEEEEEEC----------------------------CC--------CCCEEEECCGGGTTCEEEEEEEEEET
T ss_pred             EeCCCcEEEEEecC-CCCEeE----E-CCE---Ec---CCCCc--------eEEEEEecCcccCCceEEEEEEcCCC
Confidence            67889999999997 223222    2 211   11   01111        13567778777777777777998765

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.80  E-value=7.8e-18  Score=133.50  Aligned_cols=226  Identities=12%  Similarity=0.062  Sum_probs=130.5

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCCC-----ceeeEEEEEEec----CCeEEeecceEEecCCCeEE
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIGE-----STSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAE   68 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~   68 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|+|.+.+..|.     .....+.|.|..    +|.+...+. ..+.+|+.+.
T Consensus        67 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~g~~v~  145 (475)
T 1iga_A           67 GRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSL-CSTQPDGNVV  145 (475)
T ss_pred             CceEEEEcCCCCeEEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCc-cccCCCCeEE
Confidence            46666542    357999999999999999999987652     122345677763    455443322 2236899999


Q ss_pred             EEEEEeec-CC-C-eEEEEECCEEeccCCcEEEE--ecC---ceeEEEEccCCCCCCeEEEEEEEeCCcee-EEEEEEEe
Q psy12131         69 IICNVYAN-PP-A-KVEWFRDGTAITLGGRIDMH--VSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSS-QQFIQLSG  139 (245)
Q Consensus        69 l~C~~~~~-~~-~-~~~w~~~~~~~~~~~~~~~~--~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~~~~~~~~  139 (245)
                      |.|.+.|. |. | .+.|++++..........+.  ..+   ..+.|.|......|.|.|.|.+.|..+.. ...+.+.+
T Consensus       146 L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V  225 (475)
T 1iga_A          146 IACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPV  225 (475)
T ss_pred             EEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEeccc
Confidence            99999987 55 5 99999877432110000000  111   12358888888889999999999987642 22333222


Q ss_pred             c---------------C--CCCcc-ccC---ccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEE-EeeCCCCCC
Q psy12131        140 I---------------P--NIPVF-QKS---SRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRN-IVIPSDGSL  197 (245)
Q Consensus       140 ~---------------~--~~p~~-~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  197 (245)
                      .               +  .+|.. ...   .....++.+.|.|.+.+..|.....+.|+.......... ......+  
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W~~~~~~~~~~~~~~~~~~g--  303 (475)
T 1iga_A          226 PSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCG--  303 (475)
T ss_pred             ccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEECCCCcCCccccCceECCCC--
Confidence            0               0  12221 111   113678899999999765441111233322110000000 0000000  


Q ss_pred             CcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        198 AGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       198 ~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                       .......+.|..+...+...|+|.|.|..|...
T Consensus       304 -~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~  336 (475)
T 1iga_A          304 -CYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTP  336 (475)
T ss_pred             -CEEEEEEEEEchHHhccCCcEEEEEEcCCCCCc
Confidence             001234577888877777777788999998754

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.80  E-value=7.6e-18  Score=118.86  Aligned_cols=177  Identities=15%  Similarity=0.135  Sum_probs=116.2

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEee-cCCCeEEEEECCEEeccCCcEEEEecC--ceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSS--EKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      |.+.... ...+.+|+.+.|.|.+.+ .|.|.+.|++++..+....++.+....  ....|.|.++..+|.|.|+|.+.|
T Consensus         4 p~~~~~~-~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N   82 (207)
T 3rbs_A            4 PFTKSEL-AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD   82 (207)
T ss_dssp             --CCEEE-EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE
T ss_pred             CeeecCC-ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC
Confidence            4443333 567889999999999864 688999999999999877776665543  455799999999999999999999


Q ss_pred             CCceeEEEEEEEec------------------CCCCccccC--ccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCe
Q psy12131        127 NLGSSQQFIQLSGI------------------PNIPVFQKS--SRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPW  186 (245)
Q Consensus       127 ~~g~~~~~~~~~~~------------------~~~p~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (245)
                      ........+.+...                  ..+|.+...  .....+..+.|.|.+.+..|...+ .|+++..     
T Consensus        83 g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~~P~p~i-~W~k~g~-----  156 (207)
T 3rbs_A           83 GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHI-VWYKDER-----  156 (207)
T ss_dssp             TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESCCTTCEE-EEEETTE-----
T ss_pred             CCeEEEEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEeCCCCCCEE-EEEECCE-----
Confidence            44333222221100                  024443322  235678899999999776222233 2555433     


Q ss_pred             EEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcce
Q psy12131        187 RNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAY  236 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~  236 (245)
                       .+.. ... .........+.|.++...+.+.|+|.|.|.+|....+..+
T Consensus       157 -~l~~-~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L  203 (207)
T 3rbs_A          157 -EISV-DEK-HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL  203 (207)
T ss_dssp             -EECC-CCC-CCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             -ECCC-CCc-eEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEE
Confidence             0100 000 0111123569999999999999999999999987665544

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.80  E-value=1.5e-18  Score=129.77  Aligned_cols=128  Identities=21%  Similarity=0.333  Sum_probs=98.1

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe---cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEEC
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI---YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD   86 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~   86 (245)
                      ...|.|.+++.+|+|.|+|.|.|..|...+....|.|.   .+|.+...+....+..|+.+.|.|.+.|.|.|.+.|+++
T Consensus       163 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~  242 (304)
T 2yd9_A          163 SGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQG  242 (304)
T ss_dssp             TSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEET
T ss_pred             CeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEEC
Confidence            34699999999999999999999887643333455553   567777777667788999999999999999999999999


Q ss_pred             CEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCC
Q psy12131         87 GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNI  143 (245)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~  143 (245)
                      +..+.......    .....|.+.++  .|.|.|+|.|.|..|.....+.|.+...+
T Consensus       243 ~~~l~~~~~~~----~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~  293 (304)
T 2yd9_A          243 AEDLTPEDDMP----VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLP  293 (304)
T ss_dssp             TEECSCSSSCC----BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred             CEECCCccccc----CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCc
Confidence            99887654321    23345666665  58999999999999999888888876444

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.80  E-value=6.4e-20  Score=129.68  Aligned_cols=127  Identities=23%  Similarity=0.453  Sum_probs=100.2

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEE-eecCCCe
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV-YANPPAK   80 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~   80 (245)
                      |+.+..  ..|.|.+++.+|+|.|+|.+.+..|.. .+..+.|.|..+|.+...+....+..|+.+.|.|.+ .+.|.+.
T Consensus        62 r~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~  139 (209)
T 1nbq_A           62 RVTFLP--TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSE  139 (209)
T ss_dssp             TCEEET--TEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCE
T ss_pred             ceEeec--cEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCce
Confidence            444443  679999999999999999999986532 567788889888887665555567899999999996 8899999


Q ss_pred             EEEEECCEEeccCCcE-------EEEecCceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131         81 VEWFRDGTAITLGGRI-------DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus        81 ~~w~~~~~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  131 (245)
                      +.|++++..+......       ........+.|.|.++..+|.|.|+|.+.|..|..
T Consensus       140 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  197 (209)
T 1nbq_A          140 YTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP  197 (209)
T ss_dssp             EEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCC
T ss_pred             eEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcc
Confidence            9999998877654321       01111234689999999999999999999999877

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.79  E-value=1.3e-16  Score=120.43  Aligned_cols=216  Identities=16%  Similarity=0.124  Sum_probs=134.2

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeec----CCCe--EE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN----PPAK--VE   82 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~----~~~~--~~   82 (245)
                      .++.|.|.+++..|+|.|+|.+   .|. ..+.+.|.|..+|...   .......+....+.|.....    ....  +.
T Consensus        58 ~~~~L~i~~v~~~d~G~Y~C~~---~g~-~~~~~~L~V~~pP~~P---~l~c~~~~~~~~~~c~W~~~~~~~~~~~y~l~  130 (325)
T 1n26_A           58 MGRRLLLRSVQLHDSGNYSCYR---AGR-PAGTVHLLVDVPPEEP---QLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLL  130 (325)
T ss_dssp             ESSEEEECSCCGGGCEEEEEES---SSS-CSCEEEEEECCCCCCC---CCEEEBSSTTSCEEEEECCSSCCCTTCEEEEE
T ss_pred             ccceEEecccchhhCeEeEEEe---CCE-EeeeEEEEeccCCCCC---ceeEEeecCCCcEEEEECCCCCCCCCceEEEE
Confidence            3567999999999999999993   455 5677899999887632   22222123233555655321    1112  22


Q ss_pred             EEEC-CEEeccCCcE--EE--EecCceeEEEEccCC-CCCCeEEEEEEEeCCceeEE-EEEE----EecCCCCccccCcc
Q psy12131         83 WFRD-GTAITLGGRI--DM--HVSSEKHSLLVRHIK-DTDFGNYMCQASNNLGSSQQ-FIQL----SGIPNIPVFQKSSR  151 (245)
Q Consensus        83 w~~~-~~~~~~~~~~--~~--~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~g~~~~-~~~~----~~~~~~p~~~~~~~  151 (245)
                      +.+. +..   ....  ..  ........+.+..+. ....+.++|.|.|..|.... ...+    .+.|.||.......
T Consensus       131 ~~~~~~~~---~~~~~~~c~~~~~~~~~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~s~~~~~~~~~~v~P~pP~~l~v~~  207 (325)
T 1n26_A          131 VRKFQNSP---AEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTA  207 (325)
T ss_dssp             EEEESSSS---CEEEEEEEEEETTTTEEEEEECCCTTCCCEEEEEEEEEETTEEEECCCEEEETTTCBCCCCCEEEEEEE
T ss_pred             EEEccCCC---CCcccccCCCCCCCCCEEEEECCCcccCcEEEEEEEEEcCCCCcccCcEEEeeccccCCCCCcceEEEE
Confidence            2221 100   0000  00  011233456676654 34567788999999987542 2222    24566776544332


Q ss_pred             cc-CCCeeEEEEEeCC----CCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEec
Q psy12131        152 RL-GPDGYRLVWQVDT----YSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNR  226 (245)
Q Consensus       152 ~~-~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~  226 (245)
                      .. ....+.|+|.++.    +.+++.|.++|+... ...|..+......        ..+.+.+|.+++.|.|||+|.|.
T Consensus       208 ~~~~~~sv~lsW~~p~~~~~~~~~~~Y~V~yr~~~-~~~W~~~~~~~~~--------~~~~l~~L~p~t~Y~~rVrA~n~  278 (325)
T 1n26_A          208 VARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAER-SKTFTTWMVKDLQ--------HHCVIHDAWSGLRHVVQLRAQEE  278 (325)
T ss_dssp             CTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETT-CSCCEEEECGGGC--------SEEEESSCCTTCCEEEEEEEEET
T ss_pred             ecCCCCEEEEEECCCCccCCCcEeEEEEEEEEeCC-CCCCEEEcccCCc--------eEEEEeCCCCCCeEEEEEEEecC
Confidence            22 2358999999843    346799999999875 6679876543222        67899999999999999999999


Q ss_pred             CCCCCC---CcceEEecCCC
Q psy12131        227 FGWSRP---SKAYVFATEGA  243 (245)
Q Consensus       227 ~G~~~~---s~~~~~~t~~~  243 (245)
                      .|.|.+   |..+..++..+
T Consensus       279 ~g~G~~S~wS~~~~~~~~~~  298 (325)
T 1n26_A          279 FGQGEWSEWSPEAMGTPWTE  298 (325)
T ss_dssp             TTBSCCCCCCCCEEECCCCC
T ss_pred             CCCCCCcCCCCccceecCCC
Confidence            886555   45666666443

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.79  E-value=6.5e-18  Score=123.27  Aligned_cols=143  Identities=16%  Similarity=0.211  Sum_probs=103.4

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCCC----ceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEE
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIGE----STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV   73 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~   73 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|+|.+.+..|.    .....+.|.|..+|.+...+....+.+|+.+.|.|.+
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~  145 (256)
T 1nqb_A           66 SKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRS  145 (256)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEE
T ss_pred             CeEEEEEecCCCEEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEe
Confidence            46666643    357999999999999999999998652    1234577888888887777777888999999999999


Q ss_pred             eecCCC-----eEEEEE--CCEEec------------cCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCce-eEE
Q psy12131         74 YANPPA-----KVEWFR--DGTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS-SQQ  133 (245)
Q Consensus        74 ~~~~~~-----~~~w~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~-~~~  133 (245)
                      .+.+.+     .+.|++  ++..+.            ...++..........|.|.++..+|.|.|.|.+.+.... ...
T Consensus       146 ~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~  225 (256)
T 1nqb_A          146 SQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGG  225 (256)
T ss_dssp             SSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECC
T ss_pred             cCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECC
Confidence            988765     999999  554321            123555544445678999999999999999999985432 122


Q ss_pred             EEEEEecCCCC
Q psy12131        134 FIQLSGIPNIP  144 (245)
Q Consensus       134 ~~~~~~~~~~p  144 (245)
                      ...|.+.+.+|
T Consensus       226 gt~l~V~~~~~  236 (256)
T 1nqb_A          226 GTKLEIKRAAA  236 (256)
T ss_dssp             CEEEEECC---
T ss_pred             CEEEEEECCCC
Confidence            33344444444

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.79  E-value=2.6e-18  Score=124.15  Aligned_cols=193  Identities=16%  Similarity=0.210  Sum_probs=124.0

Q ss_pred             cCCeEEee----cceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcE-EEEecCceeEEEEccCCCCCCeEEEE
Q psy12131         48 YPPEVSVE----KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI-DMHVSSEKHSLLVRHIKDTDFGNYMC  122 (245)
Q Consensus        48 ~~p~~~~~----~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C  122 (245)
                      .+|.+..+    +....+.+|+.+.|.|.+.+.|.+.+.|++++..+...... ..........|.|.++...|.|.|+|
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   89 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC   89 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence            35655433    34577889999999999999999999999999887654322 11122234589999999999999999


Q ss_pred             EEEeCCceeEEEEEEEecCC---CCccc----cCccccCCCeeEEEEEeCCCCCceEEEEEEEe----ec----CCCCeE
Q psy12131        123 QASNNLGSSQQFIQLSGIPN---IPVFQ----KSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRE----RE----ELTPWR  187 (245)
Q Consensus       123 ~~~n~~g~~~~~~~~~~~~~---~p~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~----~~~~~~  187 (245)
                      .+.|..|.....+.+.+...   +|...    .......+..+.|.|.+.+.++. .+ .|++.    ..    ......
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p-~v-~W~~~~~~~g~~~~~~~~~~~  167 (241)
T 3grw_A           90 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQP-HI-QWLKHVEVNGSKVGPDGTPYV  167 (241)
T ss_dssp             EEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCC-EE-EEEEECCSSSCSSCTTTCCCE
T ss_pred             EEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCC-EE-EEEEcccCCCcccCCCCceee
Confidence            99999888777766665432   22222    11234668899999999666443 33 34442    11    001110


Q ss_pred             EEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCCCC
Q psy12131        188 NIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGAE  244 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~~~  244 (245)
                      ......  ..........+.|.++...+.+.|+|.|.|..|....+..+.+...+.+
T Consensus       168 ~~~~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~  222 (241)
T 3grw_A          168 TVLKSW--ISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAA  222 (241)
T ss_dssp             EEEEEE--ECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC------
T ss_pred             eeeeEe--eeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCC
Confidence            000000  0001112367889999999999999999999998877777777666654

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.79  E-value=2e-18  Score=125.44  Aligned_cols=128  Identities=20%  Similarity=0.243  Sum_probs=94.5

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCc----eeeEEEEEEecC---CeEEee-cceEEecCCCeEEEEEEEeecCCCeEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGES----TSKNFIVNVIYP---PEVSVE-KQWIHTAPDMRAEIICNVYANPPAKVE   82 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~---p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~   82 (245)
                      .+|.|.+++.+|+|.|+|.+.+..+..    ..+.+.|.|..+   |.+... +....+.+|+.+.|.|.+.+.|.|.+.
T Consensus        90 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~  169 (250)
T 2fbo_J           90 PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVT  169 (250)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEEE
T ss_pred             ceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCeeE
Confidence            469999999999999999999877642    245788888864   333332 345667789999999999999999999


Q ss_pred             EEECCEEeccCCcE--EEE-------------------ecCceeEEEEccCCCCCCeEEEEEEEeC---CceeEEEEEEE
Q psy12131         83 WFRDGTAITLGGRI--DMH-------------------VSSEKHSLLVRHIKDTDFGNYMCQASNN---LGSSQQFIQLS  138 (245)
Q Consensus        83 w~~~~~~~~~~~~~--~~~-------------------~~~~~~~l~i~~~~~~d~g~y~C~~~n~---~g~~~~~~~~~  138 (245)
                      |++++..+......  ...                   .......|.|.++..+|.|.|+|.|.|.   .|.....+.|.
T Consensus       170 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l~  249 (250)
T 2fbo_J          170 WYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK  249 (250)
T ss_dssp             EEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEEE
T ss_pred             EEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeEEEe
Confidence            99988766442211  000                   0002258999999999999999999994   45555555543

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.79  E-value=2e-18  Score=120.40  Aligned_cols=179  Identities=16%  Similarity=0.175  Sum_probs=120.6

Q ss_pred             ecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEecc-CCcEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         47 IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        47 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..++.+...  ...|.|.++...|.|.|.|.+.
T Consensus         5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~   82 (192)
T 2iep_A            5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIREN--GQLLTILSVEDSDDGIYCCTAN   82 (192)
T ss_dssp             CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGG--GTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCC--ccEEEEcCCCcccCeEEEEEEE
Confidence            3466776667778889999999999999999999999999988764 345544432  3479999999999999999999


Q ss_pred             eCCcee-EEEEEEEecCCCCc--cccCccccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcc
Q psy12131        126 NNLGSS-QQFIQLSGIPNIPV--FQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGP  200 (245)
Q Consensus       126 n~~g~~-~~~~~~~~~~~~p~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  200 (245)
                      |..|.. .....+.+...|..  .........+..+.|.|.+.+.++. . ..|+++..  .....  ......      
T Consensus        83 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~-~-v~W~~~~~~~~~~~~--~~~~~~------  152 (192)
T 2iep_A           83 NGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKP-S-VSWIKGDSALRENSR--IAVLES------  152 (192)
T ss_dssp             CSSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCC-E-EEEEETTEECCCCSS--EEECTT------
T ss_pred             cCCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCc-e-EEEEeCCEEccCCCc--EEEecC------
Confidence            987763 33333333211111  1112234678899999999665433 2 23454433  11111  111111      


Q ss_pred             eeeeEEEecCCCCCceEEEEEEEEecCCCCC-CCcceEEec
Q psy12131        201 IYTQSYNITGLQLFTQYEASVLAKNRFGWSR-PSKAYVFAT  240 (245)
Q Consensus       201 ~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~-~s~~~~~~t  240 (245)
                         ..+.|.++...+.+.|+|.|.|..|... .+..+.+..
T Consensus       153 ---~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~  190 (192)
T 2iep_A          153 ---GSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV  190 (192)
T ss_dssp             ---SCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ---CcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEe
Confidence               3588899999999999999999999773 344555544

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.79  E-value=2.1e-20  Score=146.63  Aligned_cols=224  Identities=14%  Similarity=0.080  Sum_probs=131.0

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec----CCeEEeecceEEecCCCeEEEEEEE
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNV   73 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~   73 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|+|.+.+..+. ....+.|.|..    +|.+...+....+.+|+.+.|.|.+
T Consensus        65 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~  143 (434)
T 1igy_B           65 DKATLTRDRSSNTANIHLSSLTSDDSAVYYCVREGEVPY-WGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLV  143 (434)
T ss_dssp             TTEECCBCGGGCBBCEEECSBCGGGCSEECCCCSSSSCC-CCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEE
T ss_pred             ccEEEEEECCCCEEEEEECCCChHHCEEEEEEEEccccc-cCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEE
Confidence            35665542    346999999999999999999986433 34456677763    4555433333345789999999999


Q ss_pred             eec-CCC-eEEEEECCEEeccCCcEEEEecC---ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec--------
Q psy12131         74 YAN-PPA-KVEWFRDGTAITLGGRIDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI--------  140 (245)
Q Consensus        74 ~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~--------  140 (245)
                      .|. |.| .+.|++++..............+   ..+.|.|..+..+| |.|.|.+.|..|.......+...        
T Consensus       144 ~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~  222 (434)
T 1igy_B          144 KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCI  222 (434)
T ss_dssp             EEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCC
T ss_pred             eeecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCcccc
Confidence            986 666 99999988642110000000001   12468899988888 99999999998875443333221        


Q ss_pred             ---CC-CCccccCc--c--ccCCCeeEEEEEeCCCCC---ceEEEEEEEeecC---CCCeEEEeeCCCCCCCcceeeeEE
Q psy12131        141 ---PN-IPVFQKSS--R--RLGPDGYRLVWQVDTYSG---IIQYLLKFREREE---LTPWRNIVIPSDGSLAGPIYTQSY  206 (245)
Q Consensus       141 ---~~-~p~~~~~~--~--~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  206 (245)
                         +. |..+....  .  ...++.+.|.|.+.+..|   ... ..|+++...   ....... .....   .......+
T Consensus       223 ~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~-i~W~k~~~~~~~~~~~~~~-~~~~~---~~~~~~~L  297 (434)
T 1igy_B          223 CTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQ-FSWFVDNVEVHTAQTQPRE-EQFNS---TFRVVSAL  297 (434)
T ss_dssp             CCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCC-BCBBSSSCCBCCCSCCCCC-CCCSS---SCCCCCCE
T ss_pred             CCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeE-EEEEeCCcccCCcccCcce-eCCCC---cEEEEEEE
Confidence               11 22222111  1  567899999999976532   122 224444320   0000000 00000   00011346


Q ss_pred             EecCCCCCceEEEEEEEEecCCCCCC
Q psy12131        207 NITGLQLFTQYEASVLAKNRFGWSRP  232 (245)
Q Consensus       207 ~i~~l~~~~~y~~~v~a~N~~G~~~~  232 (245)
                      .|..+...+.+.|+|.|.|..|....
T Consensus       298 ~i~~~~~~d~G~Y~C~a~n~~~~~~~  323 (434)
T 1igy_B          298 PIMHQDWLNGKEFKCRVNSAAFPAPI  323 (434)
T ss_dssp             ECCHHHHHHTCCCBCCBCCSSCSSCC
T ss_pred             EECHHHccCCCcEEEEEECCCCCCce
Confidence            67766555555666669999997533

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.79  E-value=6.1e-18  Score=127.06  Aligned_cols=134  Identities=19%  Similarity=0.223  Sum_probs=104.4

Q ss_pred             EeecceEEEeccCCCCCEEEEEEEE-cCCCCce--eeEEEEEEe-----cCCeEEeecce-EEecCCCeEEEEEEEeecC
Q psy12131          7 LYNRESLDLDRVTLKLAGLYQCIAS-NNIGEST--SKNFIVNVI-----YPPEVSVEKQW-IHTAPDMRAEIICNVYANP   77 (245)
Q Consensus         7 ~~~~~~L~i~~~~~~d~G~Y~C~~~-~~~~~~~--~~~~~l~v~-----~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~   77 (245)
                      ...+..|.|.+++.+|+|.|+|.|. +..|...  ...+.+.+.     .+|.+...+.. ..+..|+.+.|.|.+.|.|
T Consensus       158 ~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P  237 (315)
T 1itb_B          158 SGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQL  237 (315)
T ss_dssp             EEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECT
T ss_pred             eecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCC
Confidence            4456679999999999999999999 6766632  345555444     56777655543 5788999999999999999


Q ss_pred             CCeEEEEECCEEeccCCcEEE-----Eec-------CceeEEEEccCCCCC-CeEEEEEEEeCCceeEEEEEEEec
Q psy12131         78 PAKVEWFRDGTAITLGGRIDM-----HVS-------SEKHSLLVRHIKDTD-FGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus        78 ~~~~~w~~~~~~~~~~~~~~~-----~~~-------~~~~~l~i~~~~~~d-~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      .|.+.|++++..+........     ...       ...+.|.|.++..+| .|.|+|.|.|..|.....+.|.+.
T Consensus       238 ~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          238 SDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             TSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred             CCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence            999999999998876542211     111       123589999999999 999999999999999998888764

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.79  E-value=4.1e-18  Score=122.22  Aligned_cols=193  Identities=16%  Similarity=0.230  Sum_probs=127.7

Q ss_pred             cCCeEEeec----ceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEE-EEecCceeEEEEccCCCCCCeEEEE
Q psy12131         48 YPPEVSVEK----QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRID-MHVSSEKHSLLVRHIKDTDFGNYMC  122 (245)
Q Consensus        48 ~~p~~~~~~----~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C  122 (245)
                      .+|.+...+    ....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....+. .........|.|.++...|.|.|+|
T Consensus        14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   93 (231)
T 3ojm_B           14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC   93 (231)
T ss_dssp             EEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred             cCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEE
Confidence            356554444    56778899999999999999999999999998876543321 1112234579999999999999999


Q ss_pred             EEEeCCceeEEEEEEEecCC---CCccc----cCccccCCCeeEEEEEeCCCCCceEEEEEEEeec-C-------CCCeE
Q psy12131        123 QASNNLGSSQQFIQLSGIPN---IPVFQ----KSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE-E-------LTPWR  187 (245)
Q Consensus       123 ~~~n~~g~~~~~~~~~~~~~---~p~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~  187 (245)
                      .+.|..|.....+.+.+...   +|...    .......+..+.|.|.+.+.++. .+ .|++... +       .....
T Consensus        94 ~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~v-~W~~~~~~~g~~~~~~~~~~~  171 (231)
T 3ojm_B           94 VVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQP-HI-QWIKHVEKNGSKYGPDGLPYL  171 (231)
T ss_dssp             EEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCC-EE-EEEEECCBTTBSBCTTSCBCE
T ss_pred             EEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCC-EE-EEEECCCCCCccccCCCcceE
Confidence            99999888777666665432   22222    11234668899999999666443 23 3444211 0       01111


Q ss_pred             EEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCCCCC
Q psy12131        188 NIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGAET  245 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~~~~  245 (245)
                      .......   ........+.|.++...+.+.|+|.|.|..|....+..+.+...+.+|
T Consensus       172 ~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~p  226 (231)
T 3ojm_B          172 KVLKHSG---INSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP  226 (231)
T ss_dssp             EEEEECS---TTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC---
T ss_pred             eEecccc---cccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCCC
Confidence            1111000   000111468899999999999999999999998777788888777654

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.79  E-value=1.2e-17  Score=117.32  Aligned_cols=126  Identities=15%  Similarity=0.184  Sum_probs=90.0

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCce----eeEEEEEEecC---CeEEeecceEEecCCCeEEEEEEEe-ecCCCe
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGEST----SKNFIVNVIYP---PEVSVEKQWIHTAPDMRAEIICNVY-ANPPAK   80 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~----~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~   80 (245)
                      +..+|.|.+++.+|+|.|+|.+.+..|...    .+.+.|.|..+   |.+...    ....|+.+.|.|.+. |.|.|.
T Consensus        63 ~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~  138 (201)
T 1dr9_A           63 NNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF----EIPTSNIRRIICSTSGGFPEPH  138 (201)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE----ECSSTTEEEEEEEEEEESSCEE
T ss_pred             CCcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEec----cCCCCCeEEEEEecCCccCCCE
Confidence            346799999999999999999999876532    46777888765   333221    224588999999995 899999


Q ss_pred             EEEEECCEEeccCCcEEEEecC-ce-eEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131         81 VEWFRDGTAITLGGRIDMHVSS-EK-HSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus        81 ~~w~~~~~~~~~~~~~~~~~~~-~~-~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      +.|++++..+............ .. ....+..+...|.|.|+|.|.|..|.....+++.
T Consensus       139 i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~~  198 (201)
T 1dr9_A          139 LSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNWN  198 (201)
T ss_dssp             EEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEEC
T ss_pred             EEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEecc
Confidence            9999999887754322222111 11 1112334456799999999999999888777654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.79  E-value=7e-19  Score=134.03  Aligned_cols=127  Identities=23%  Similarity=0.288  Sum_probs=104.5

Q ss_pred             cceEEEeccCCCCCE-EEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCE
Q psy12131         10 RESLDLDRVTLKLAG-LYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGT   88 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~   88 (245)
                      ...|.|.+++.+|+| .|+|.|.|..|. .+..+.|.|..+|.+    ....+..|+.+.|.|.+.|.|.|.+.|++++.
T Consensus       211 ~~~L~i~~v~~~D~G~~Y~C~a~n~~g~-~~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~  285 (347)
T 2ifg_A          211 SLGLTLANVTSDLNRKNVTCWAENDVGR-AEVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGS  285 (347)
T ss_dssp             EEEEEEESCCSTTTTCCEEECCEETTEE-CCEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTE
T ss_pred             cceEEEeeCChHHCCCeEEEEEEcCCCC-EEEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCE
Confidence            456999999999999 999999999877 577888888888886    11223468999999999999999999999999


Q ss_pred             EeccCCcEEEEec-------CceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecC
Q psy12131         89 AITLGGRIDMHVS-------SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIP  141 (245)
Q Consensus        89 ~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~  141 (245)
                      .+...........       .....|.|.++...|.|.|+|.|.|..|.....+.+.+..
T Consensus       286 ~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  345 (347)
T 2ifg_A          286 VLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD  345 (347)
T ss_dssp             ECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCC
T ss_pred             ECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecC
Confidence            8886554333211       1256799999999999999999999999999988887764

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.79  E-value=3e-18  Score=122.93  Aligned_cols=137  Identities=22%  Similarity=0.427  Sum_probs=103.9

Q ss_pred             EEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCC----eEEe-ecceEEecCCCeEEEEEEEeecCCC
Q psy12131          5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP----EVSV-EKQWIHTAPDMRAEIICNVYANPPA   79 (245)
Q Consensus         5 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p----~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~   79 (245)
                      ....+...|.|.+++.+|+|.|+|.+.+..+. ....+.|.|..++    .+.. .+....+..|+.+.|.|.+.+.|.+
T Consensus        70 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~-~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p  148 (231)
T 3ojm_B           70 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQP  148 (231)
T ss_dssp             EEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCC
T ss_pred             eeecCcceEEEecCCcccCEEEEEEEecccCc-ccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCC
Confidence            44455667999999999999999999998776 5777888887532    2222 2345677899999999999999999


Q ss_pred             eEEEEE----CCEEeccCCcE--EEEe-----cCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCC
Q psy12131         80 KVEWFR----DGTAITLGGRI--DMHV-----SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPN  142 (245)
Q Consensus        80 ~~~w~~----~~~~~~~~~~~--~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~  142 (245)
                      .+.|++    ++..+......  ....     ......|.|.++...|.|.|+|.+.|..|.....+.+.+...
T Consensus       149 ~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  222 (231)
T 3ojm_B          149 HIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPK  222 (231)
T ss_dssp             EEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecC
Confidence            999999    77666543321  1111     112357999999999999999999999998888777766533

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.79  E-value=2.8e-18  Score=107.80  Aligned_cols=94  Identities=24%  Similarity=0.438  Sum_probs=84.1

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .||.|...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+...+....|.|.++..+|.|.|+|.|.|.
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   91 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNA   91 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEEC
Confidence            36777777778889999999999999999999999999999998888888777777889999999999999999999999


Q ss_pred             CceeEEEEEEEecC
Q psy12131        128 LGSSQQFIQLSGIP  141 (245)
Q Consensus       128 ~g~~~~~~~~~~~~  141 (245)
                      .|.....+.|.+..
T Consensus        92 ~G~~~~~~~l~V~~  105 (107)
T 3knb_B           92 AGEAYAAAAVTVLE  105 (107)
T ss_dssp             TEEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEEc
Confidence            99988888877653

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.79  E-value=2.8e-18  Score=120.22  Aligned_cols=178  Identities=12%  Similarity=0.100  Sum_probs=117.7

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +|.+...+.. .+.+|+.+.|.|.+.+ +.+.+.|++++..+.... ...........|.|.++..+|.|.|.|.+.|..
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~-~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 3p2t_A            5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDR-QNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPV   81 (196)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEE-ECCCSSSSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccc-cccccCCceEEEEeccCCcccCceEEEEEeCCC
Confidence            5677666665 6789999999999987 678999999987654311 111112345789999999999999999999998


Q ss_pred             ce--eEEEEEEEe--cCCCCccccC--ccccCCCeeEEEEEeCCCCCceEEEEEEEeecCC--CCeEEEeeCCCCCCCcc
Q psy12131        129 GS--SQQFIQLSG--IPNIPVFQKS--SRRLGPDGYRLVWQVDTYSGIIQYLLKFREREEL--TPWRNIVIPSDGSLAGP  200 (245)
Q Consensus       129 g~--~~~~~~~~~--~~~~p~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  200 (245)
                      |.  ....+.+.+  .+.+|.+...  ..+..++.++|.|.+.+.++  .| .|+++....  ........       ..
T Consensus        82 g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~--~~-~w~k~g~~~~~~~~~~~~~-------~~  151 (196)
T 3p2t_A           82 GWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSPMD--TF-LLCKERAAHPLLCLRSEHG-------AQ  151 (196)
T ss_dssp             EEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEEEEEE--EE-EEEETTCCCGGGSEEEEEE-------EE
T ss_pred             cccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecCCCCC--EE-EEEeCCCcccceeeccccc-------cc
Confidence            73  233344444  3344443322  23567899999999865422  33 355553311  11110000       00


Q ss_pred             eeeeEEEecCCCCCceEEEEEEEEecCC---CCCCCcceEEe
Q psy12131        201 IYTQSYNITGLQLFTQYEASVLAKNRFG---WSRPSKAYVFA  239 (245)
Q Consensus       201 ~~~~~~~i~~l~~~~~y~~~v~a~N~~G---~~~~s~~~~~~  239 (245)
                      .....|.|.++...+.+.|+|.|.|..+   .+..|..+.+.
T Consensus       152 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~  193 (196)
T 3p2t_A          152 QHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELI  193 (196)
T ss_dssp             EEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEE
T ss_pred             CcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEE
Confidence            1226789999999999999999999987   36667766654

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.79  E-value=1.4e-18  Score=122.46  Aligned_cols=120  Identities=16%  Similarity=0.219  Sum_probs=93.4

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeec-CCCeEEEEECC
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN-PPAKVEWFRDG   87 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~w~~~~   87 (245)
                      ....|.|.+++.+|+|.|+|.+.|.  . .+..+.|.|..+|.+...+. ..+.+|+.+.|.|.+.+. |.+.+.|++++
T Consensus        52 ~~~~L~i~~v~~~D~G~Y~C~a~n~--~-~s~~~~l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g  127 (204)
T 3sgj_C           52 QASSYFIDAATVDDSGEYRCQTQLS--T-LSDPVQLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNG  127 (204)
T ss_dssp             CSSEEEESSCCGGGCEEEEEEETTS--B-CCCCEEEEEECSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETT
T ss_pred             CccEEEEecccccCCEEEEEEeCCC--c-ccccEEEEEecCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECC
Confidence            3467999999999999999999873  2 56678889988887666554 557789999999999665 55799999999


Q ss_pred             EEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC-ceeEEEEEEEec
Q psy12131         88 TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL-GSSQQFIQLSGI  140 (245)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~-g~~~~~~~~~~~  140 (245)
                      ..+...        .....|.|.++..+|.|.|+|.+.|.. +.....+.|.+.
T Consensus       128 ~~~~~~--------~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (204)
T 3sgj_C          128 KGRKYF--------HHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITIT  173 (204)
T ss_dssp             EEEEEE--------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             cEeecc--------cCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEe
Confidence            875421        123479999999999999999999944 444445555554

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.79  E-value=5.1e-18  Score=119.07  Aligned_cols=119  Identities=13%  Similarity=0.171  Sum_probs=86.7

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCC-CC-ceeeEEEEEEec---CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNI-GE-STSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEW   83 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w   83 (245)
                      ....|.|.+++.+|+|.|+|.+.|.. |. ..+..+.|.|..   +|.+...+. ..+.+|+.+.|.|.+.+. .+.+.|
T Consensus        56 ~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~~~-~~~v~W  133 (198)
T 1ugn_A           56 KKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPS-PVVNSGGNVTLQCDSQVA-FDGFIL  133 (198)
T ss_dssp             TTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEESC-SEEETTCCEEEEEECSSC-CSEEEE
T ss_pred             cccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCCc-cccCCCCcEEEEEecCCC-CcEEEE
Confidence            34679999999999999999999976 42 246778888886   456555443 457799999999999887 789999


Q ss_pred             EECCEEeccCCc-EEE-EecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         84 FRDGTAITLGGR-IDM-HVSSEKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        84 ~~~~~~~~~~~~-~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      ++++..+..... +.. ...+....|.|.++..+|.|.|+|.|.|..+
T Consensus       134 ~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          134 CKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             EEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             EECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence            999887643221 111 1122357899999999999999999999864

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.79  E-value=1.5e-18  Score=122.97  Aligned_cols=126  Identities=20%  Similarity=0.363  Sum_probs=97.2

Q ss_pred             EEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec-CCeEEeecceEEecCCCeEEEEEEE-eecCCCeEEEEECCEEe
Q psy12131         13 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIHTAPDMRAEIICNV-YANPPAKVEWFRDGTAI   90 (245)
Q Consensus        13 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~w~~~~~~~   90 (245)
                      |.|.+++.+|+|.|+|.+.+..|...+..+.|.|.. +|.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+
T Consensus        74 l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l  153 (212)
T 2v9r_A           74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPL  153 (212)
T ss_dssp             CCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEE
T ss_pred             EEecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccC
Confidence            444567999999999999998776445677777775 4444455556678899999999998 89999999999999988


Q ss_pred             ccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE-EEEEEecC
Q psy12131         91 TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FIQLSGIP  141 (245)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~~~~~~  141 (245)
                      ..........   ...|.|.++..+|.|.|+|.+.|..|.... .+.|.+..
T Consensus       154 ~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~  202 (212)
T 2v9r_A          154 DDKDERITIR---GGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE  202 (212)
T ss_dssp             CTTSTTEEEE---TTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             CCCcceEEcc---CCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEe
Confidence            7544322222   237999999999999999999999987654 35666553

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.79  E-value=1.5e-17  Score=115.88  Aligned_cols=173  Identities=12%  Similarity=0.116  Sum_probs=118.3

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecC-CCeEEEEE-CCEEec-cCCcEEEEe-cCceeEEEEccCCCCCCeEEEEEE
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFR-DGTAIT-LGGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQA  124 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~w~~-~~~~~~-~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~  124 (245)
                      ++.+...+....+.+|+.+.|.|.+.+.+ .+.+.|++ ++..+. ...++.+.. ......|.|.++..+|.|.|.|.+
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            34556667777889999999999999876 78999999 887776 344554432 345679999999999999999999


Q ss_pred             EeCC-ceeEEEEEEEecCCCCcccc--CccccCCCeeEEEEEeCCCCCceEEEEEEEeec-C-CCCeEEEeeCCCCCCCc
Q psy12131        125 SNNL-GSSQQFIQLSGIPNIPVFQK--SSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE-E-LTPWRNIVIPSDGSLAG  199 (245)
Q Consensus       125 ~n~~-g~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~  199 (245)
                      .|.. +.....+.+.+...|.....  ......++.+.|.|.+.+.++..  ..|+++.. . ...-..+.....     
T Consensus        82 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~--v~W~~~~~~~~~~~~~~~~~~~~-----  154 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPT--IIWKHKGRDVILKKDVRFIVLSN-----  154 (191)
T ss_dssp             EETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCE--EEEEETTEEGGGGCCTTEEECTT-----
T ss_pred             EcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCE--EEEEECCEEeeccCCceEEEecC-----
Confidence            9987 55566666666543322111  22346788999999997665443  33555433 0 000001111111     


Q ss_pred             ceeeeEEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12131        200 PIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP  232 (245)
Q Consensus       200 ~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~  232 (245)
                          ..+.|.++...+.+.|+|.|.|..|....
T Consensus       155 ----~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  183 (191)
T 1epf_A          155 ----NYLQIRGIKKTDEGTYRCEGRILARGEIN  183 (191)
T ss_dssp             ----SCEEETTCCGGGCEEEEEEEEEGGGTEEE
T ss_pred             ----CeEEECCCChhhCEEEEEEEEEecceeEE
Confidence                35889999999999999999999865433

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.79  E-value=1.8e-18  Score=121.73  Aligned_cols=121  Identities=11%  Similarity=0.147  Sum_probs=88.6

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCC---CeEEEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP---AKVEWFR   85 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~~~w~~   85 (245)
                      ....|.|.+++.+|+|.|+|.|.|..+. .++.+.|.|..+|..........+.+|+.+.|.|.+.+.++   +.+.|++
T Consensus        52 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k  130 (202)
T 1vca_A           52 TTSTLTMNPVSFGNEHSYLCTATCESRK-LEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLK  130 (202)
T ss_dssp             TEEEEEESSCCGGGCSEEEEEEEETTEE-EEEEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEE
T ss_pred             CccEEEECcCCHHHCEEEEEEEEECCce-EeeEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEe
Confidence            3456999999999999999999998776 67789999988765332222245779999999999988643   3799999


Q ss_pred             CCEEeccCCcEEEE----ecCceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         86 DGTAITLGGRIDMH----VSSEKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        86 ~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      ++..+.........    .......|.|.....+|.|.|+|.|.|..+.
T Consensus       131 ~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~  179 (202)
T 1vca_A          131 GDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE  179 (202)
T ss_dssp             TTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             CCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccC
Confidence            99876532100000    0012345678888888899999999998765

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.79  E-value=1.3e-18  Score=123.77  Aligned_cols=121  Identities=22%  Similarity=0.400  Sum_probs=96.3

Q ss_pred             EEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec-CCeEEeecceEEecCCCeEEEEEEE-eecCCCeEEEEECCEEec
Q psy12131         14 DLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIHTAPDMRAEIICNV-YANPPAKVEWFRDGTAIT   91 (245)
Q Consensus        14 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~w~~~~~~~~   91 (245)
                      .|.+++.+|+|.|+|.+.|..|...+..+.|.|.. +|.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++..+.
T Consensus        72 ~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~  151 (217)
T 2vr9_A           72 TMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLD  151 (217)
T ss_dssp             CCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEEC
T ss_pred             EeccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCC
Confidence            68899999999999999998776445566777765 5556566667778899999999999 899999999999998887


Q ss_pred             cC--------CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12131         92 LG--------GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL  137 (245)
Q Consensus        92 ~~--------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~  137 (245)
                      ..        .++...   ....|.|.++..+|.|.|+|.+.|..|.......+
T Consensus       152 ~~~~~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~  202 (217)
T 2vr9_A          152 DLKAMSFGASSRVRIV---DGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAK  202 (217)
T ss_dssp             CCCCC---CCCSEEEE---TTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEE
T ss_pred             cccccccccCCcEEec---CCCcEEEeeCCHHHCeEEEEEEEcccceeccccEE
Confidence            32        233332   22379999999999999999999999987664433

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.79  E-value=5.2e-18  Score=119.52  Aligned_cols=167  Identities=13%  Similarity=0.106  Sum_probs=112.5

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCe-EEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAK-VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+....          ..|.|.++..+|.|.|+|.+.|.
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~a~n~   76 (204)
T 3sgj_C            7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQTQLS   76 (204)
T ss_dssp             BCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEEETTS
T ss_pred             CCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEEEeCCC
Confidence            46666666656788999999999999988775 99999998876542          47999999999999999999986


Q ss_pred             CceeEEEEEEEecCCCCcccc-CccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEE
Q psy12131        128 LGSSQQFIQLSGIPNIPVFQK-SSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSY  206 (245)
Q Consensus       128 ~g~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (245)
                      .......+.+..  .++.... ......++.+.|.|.+.++.|...+. |+++..   .. .... .         ...+
T Consensus        77 ~~s~~~~l~V~~--~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v~-W~k~g~---~~-~~~~-~---------~~~L  139 (204)
T 3sgj_C           77 TLSDPVQLEVHI--GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVT-YLQNGK---GR-KYFH-H---------NSDF  139 (204)
T ss_dssp             BCCCCEEEEEEC--SSEEEECSCSEEETTCCEEEEEEEGGGCCCEEEE-EEETTE---EE-EEEE-E---------CCCE
T ss_pred             cccccEEEEEec--CceEecCCceeEeCCCcEEEEEEecCCCCCceEE-EEECCc---Ee-eccc-C---------CceE
Confidence            554444444442  2222211 13345789999999996655543343 455432   11 1111 1         1468


Q ss_pred             EecCCCCCceEEEEEEEEecCC-CCCCCcceEEecCC
Q psy12131        207 NITGLQLFTQYEASVLAKNRFG-WSRPSKAYVFATEG  242 (245)
Q Consensus       207 ~i~~l~~~~~y~~~v~a~N~~G-~~~~s~~~~~~t~~  242 (245)
                      .|.++...+.+.|+|.|.|..| ....+..+.+...+
T Consensus       140 ~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~  176 (204)
T 3sgj_C          140 YIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGL  176 (204)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcC
Confidence            8999999999999999999543 33333445554433

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.78  E-value=5e-18  Score=120.41  Aligned_cols=134  Identities=16%  Similarity=0.236  Sum_probs=98.7

Q ss_pred             ceEEEe--ecceEEEeccCCCCCEEEEEEEEcCCCC--ceeeEEEEEEe----cCCeEEeecceEEecCCCeEEEEEEEe
Q psy12131          3 EIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVY   74 (245)
Q Consensus         3 ~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~   74 (245)
                      |+.+..  +..+|.|.+++.+|+|.|+|.+.+..+.  .....+.|.|.    .+|.+...+....+..|+.+.|.|.+.
T Consensus        60 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~  139 (213)
T 3mj8_L           60 HFSGSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMIN  139 (213)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEE
T ss_pred             cEEEEecCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEee
Confidence            555443  3356999999999999999999998772  34667788888    677777666544555899999999999


Q ss_pred             ec-CC-CeEEEEECCEEeccCCcEE--EEecC---ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         75 AN-PP-AKVEWFRDGTAITLGGRID--MHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        75 ~~-~~-~~~~w~~~~~~~~~~~~~~--~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      +. |+ +.+.|++++..+.......  ....+   ..+.|.|..+..+|.|.|+|.|.|..+...+.+.
T Consensus       140 g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  208 (213)
T 3mj8_L          140 GFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS  208 (213)
T ss_dssp             EEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred             ceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence            85 33 3999999999876431100  00111   1246889999999999999999999877666553

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.78  E-value=2.4e-17  Score=113.96  Aligned_cols=173  Identities=15%  Similarity=0.184  Sum_probs=113.2

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCc--eeEEEEccCCCCCCeEEEEEEEe
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE--KHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......+.....  ...|.|.++...|.|.|.|.+.|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   81 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED   81 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence            3555566667888999999999999998999999999999887665544433222  46899999999999999999999


Q ss_pred             CCce-eEEEEEEEecCCCCccccC---ccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCccee
Q psy12131        127 NLGS-SQQFIQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIY  202 (245)
Q Consensus       127 ~~g~-~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (245)
                      ..|. ....+.+.+.. +|.+...   .....++.+.|.|.+.+.++...+. |+++...-.....             .
T Consensus        82 ~~~~~~~~~~~l~V~~-~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~-W~~~~~~~~~~~~-------------~  146 (182)
T 1rhf_A           82 GGETEISQPVWLTVEG-VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIV-WWRGTTKIGGPAP-------------S  146 (182)
T ss_dssp             CTTCEECCCEEEEEEC-SCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEE-EEETTEECSCSEE-------------S
T ss_pred             CCCcEEEEEEEEEEec-CCeEEecCcceEecCCCEEEEEeEecCCCCCCEEE-EEcCCeECCCCCC-------------C
Confidence            8664 33445555443 2332221   2356788999999997665432333 4444320000000             1


Q ss_pred             eeEEEecCCCCCceEEEEEEEEecCCCCCC-CcceEE
Q psy12131        203 TQSYNITGLQLFTQYEASVLAKNRFGWSRP-SKAYVF  238 (245)
Q Consensus       203 ~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~-s~~~~~  238 (245)
                      ...+.|.++.+.  +.|+|.|.|..|.... +..+.+
T Consensus       147 ~~~L~i~~~~d~--G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          147 PSVLNVTGVTQS--TMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             SEEEEECCCSSC--EEEEEEEEETTEEEECCCEEEEE
T ss_pred             ceEEEEeccccC--eEEEEEEECCCCCcccceEEEEe
Confidence            267888888655  5566669999997743 444443

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.78  E-value=2.9e-17  Score=124.19  Aligned_cols=129  Identities=17%  Similarity=0.228  Sum_probs=100.4

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcC--CCCc---eeeEEEEEEecCC----eEEeecceEEecCCCeEEEEEEEeecC---
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNN--IGES---TSKNFIVNVIYPP----EVSVEKQWIHTAPDMRAEIICNVYANP---   77 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~---~~~~~~l~v~~~p----~~~~~~~~~~~~~g~~~~l~C~~~~~~---   77 (245)
                      +..|.|.+++.+|+|.|+|.|.|.  .|..   .+..+.|.|..+|    .+. .+....+..|+.+.|.|.+.+.|   
T Consensus       181 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~  259 (329)
T 3oq3_B          181 GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTAVSTSLLV  259 (329)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEEEETTCCT
T ss_pred             CCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEEEECCCCC
Confidence            577999999999999999999986  5442   2344778888776    333 55667888999999999999998   


Q ss_pred             CC-eEEEEECCEEe-ccCCcEEEE--ecC--ceeEEEEccCCCCCCe-EEEEEEEeCCceeEEEEEEEe
Q psy12131         78 PA-KVEWFRDGTAI-TLGGRIDMH--VSS--EKHSLLVRHIKDTDFG-NYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        78 ~~-~~~w~~~~~~~-~~~~~~~~~--~~~--~~~~l~i~~~~~~d~g-~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      .+ .+.|++++..+ .........  ..+  ....|.|.++..+|.| .|+|.|.|..|.....+.|.+
T Consensus       260 ~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          260 DDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             TCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             CCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence            67 89999998774 333322211  111  3568999999999999 999999999999888777664

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.78  E-value=1.2e-17  Score=116.63  Aligned_cols=120  Identities=15%  Similarity=0.223  Sum_probs=86.7

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCe---EEeecceEEecCCC-eEEEEEEEeec-
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE---VSVEKQWIHTAPDM-RAEIICNVYAN-   76 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~---~~~~~~~~~~~~g~-~~~l~C~~~~~-   76 (245)
                      +|+.+.. +.+|+|.+++.+|+|.|+|.+.+..+. ....+.|.|..+|.   +....  .....|. .+.|.|.+.+. 
T Consensus        62 ~R~~~~~-~~sL~I~~v~~~D~G~Y~C~~~~~~~~-~~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~  137 (193)
T 2if7_A           62 KRLNFTQ-SYSLQLSNLKMEDTGSYRAQISTKTSA-KLSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDAD  137 (193)
T ss_dssp             TTEEECT-TCCEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCC
T ss_pred             ccEEECC-CeEEEECCCCcccCceEEEEEEecCCC-eEEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCC
Confidence            3666663 566999999999999999999998776 45688888886543   22222  1123455 89999999985 


Q ss_pred             CCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCC-CCeEEEEEEEeCCceeEEEEE
Q psy12131         77 PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT-DFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        77 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      |.|.+.|++++..+....           .|.|...... |.|.|+|.|.|..|.....+.
T Consensus       138 p~p~i~W~~~g~~l~~~~-----------~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~  187 (193)
T 2if7_A          138 DNVSFRWEALGNTLSSQP-----------NLTVSWDPRISSEQDYTCIAENAVSNLSFSVS  187 (193)
T ss_dssp             TTCEEEEEETTEEEESSS-----------EEEEEECTTTCSCCEEEEEEEETTEEEEEEEE
T ss_pred             CceEEEEEeCCEEcCCCC-----------eEEEEeccCcCCCCcEEEEEECCCCccccccc
Confidence            478999999988654322           3555444443 899999999999988755443

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.78  E-value=9.2e-18  Score=118.89  Aligned_cols=169  Identities=17%  Similarity=0.190  Sum_probs=120.6

Q ss_pred             cCCCeEEEEEEEeec-CCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131         62 APDMRAEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus        62 ~~g~~~~l~C~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      -.++.+.|.|.+.+. |.+.+.|++++..+....++.+...+....|.|.++..+|.|.|+|.+.|..|.....+.+.+.
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~   94 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ   94 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEe
Confidence            367788899998875 4789999999999988888877777777889999999999999999999998887777777543


Q ss_pred             C--------------------CCCcccc---CccccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCC
Q psy12131        141 P--------------------NIPVFQK---SSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDG  195 (245)
Q Consensus       141 ~--------------------~~p~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  195 (245)
                      .                    .|+....   ......+..+.|.|.+.+.++..  ..|+++..  .......+......
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~--v~W~~~~~~~~~~~~~~~~~~~~~  172 (212)
T 2r15_A           95 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE--VSWLKNEKALAQTDHCNLKFEAGR  172 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCE--EEEEETTEEECCCSSEEEEEETTT
T ss_pred             eccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCce--EEEEECCeECccCCCEEEEEcCCC
Confidence            1                    2222221   12356788999999997765432  33555433  11111122211111


Q ss_pred             CCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEe
Q psy12131        196 SLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       196 ~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~  239 (245)
                             ...+.|.++...+.+.|+|.|.|..|....+..+.+.
T Consensus       173 -------~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          173 -------TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF  209 (212)
T ss_dssp             -------EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -------EEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEE
Confidence                   2578999999999999999999999987665555554

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.78  E-value=2.2e-19  Score=136.85  Aligned_cols=143  Identities=17%  Similarity=0.358  Sum_probs=76.6

Q ss_pred             eEEEeecceEEEeccCCCCCEEEEEEEEcCC-CCc--eeeEEEEEEec------CCeEEeecceE--EecCCCeEEEEEE
Q psy12131          4 IELLYNRESLDLDRVTLKLAGLYQCIASNNI-GES--TSKNFIVNVIY------PPEVSVEKQWI--HTAPDMRAEIICN   72 (245)
Q Consensus         4 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~--~~~~~~l~v~~------~p~~~~~~~~~--~~~~g~~~~l~C~   72 (245)
                      ..+..++..|.|.+++.+|+|.|+|.|.|.. |..  .++.+.|.|..      +|.+..++...  .+..|+.+.|.|.
T Consensus       170 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~  249 (349)
T 4dep_C          170 NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCT  249 (349)
T ss_dssp             SSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEE
T ss_pred             cceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEE
Confidence            3445566789999999999999999999986 432  36777788876      56665544322  6778999999999


Q ss_pred             Ee----ecCCCeEEEEECCEEecc-CCcEEEEe-------cC--ceeEEEEccCCCCCC-eEEEEEEEeCCceeEEEEEE
Q psy12131         73 VY----ANPPAKVEWFRDGTAITL-GGRIDMHV-------SS--EKHSLLVRHIKDTDF-GNYMCQASNNLGSSQQFIQL  137 (245)
Q Consensus        73 ~~----~~~~~~~~w~~~~~~~~~-~~~~~~~~-------~~--~~~~l~i~~~~~~d~-g~y~C~~~n~~g~~~~~~~~  137 (245)
                      +.    +.|.|.+.|++++..+.. ..++.+..       .+  ..+.|.|.++..+|. |.|+|.|.|..|.....+.|
T Consensus       250 ~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l  329 (349)
T 4dep_C          250 VYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKV  329 (349)
T ss_dssp             EEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC-
T ss_pred             EEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEE
Confidence            98    468889999999887665 22211100       00  134599999999999 99999999999998888888


Q ss_pred             EecCCCCcc
Q psy12131        138 SGIPNIPVF  146 (245)
Q Consensus       138 ~~~~~~p~~  146 (245)
                      .+...+|.+
T Consensus       330 ~v~~~~p~~  338 (349)
T 4dep_C          330 KQKVPAPRY  338 (349)
T ss_dssp             ---------
T ss_pred             eeecCCCCC
Confidence            776444433

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.78  E-value=4.3e-18  Score=126.50  Aligned_cols=131  Identities=19%  Similarity=0.251  Sum_probs=103.7

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec----CCeEEeecceEEecCCCeEEEEEEEeecCC-CeEEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNVYANPP-AKVEWFR   85 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~w~~   85 (245)
                      ..|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..    +|.+...+....+..|+.+.|.|.+.+.|. +.+.|++
T Consensus       144 ~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~  223 (292)
T 4dkd_C          144 HGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQH  223 (292)
T ss_dssp             SCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCB
T ss_pred             ceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeC
Confidence            34999999999999999999988776556688899986    888888877777789999999999998765 4788888


Q ss_pred             CCEEeccCCcEEEEec--CceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecC
Q psy12131         86 DGTAITLGGRIDMHVS--SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIP  141 (245)
Q Consensus        86 ~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~  141 (245)
                      ++..+...........  ...+.|.|.++..+|.|.|+|.+.|..|.....+.|.+..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  281 (292)
T 4dkd_C          224 NNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE  281 (292)
T ss_dssp             SSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             CCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEee
Confidence            8776544332222111  1235899999999999999999999999988888887653

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.78  E-value=4.8e-18  Score=118.99  Aligned_cols=118  Identities=14%  Similarity=0.234  Sum_probs=91.4

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCC-ceeeEEEEEEec---CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR   85 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~   85 (245)
                      ...|.|.+++.+|+|.|+|.|.|..|. ..+..+.|.|..   +|.+...+.. .+.+|+.++|.|.+.+ +.+.+.|++
T Consensus        57 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~-~~~~~~w~k  134 (196)
T 3p2t_A           57 KARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRS-PMDTFLLCK  134 (196)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEE-EEEEEEEEE
T ss_pred             eEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCC-CCCEEEEEe
Confidence            456999999999999999999998772 356778888864   5666555543 5689999999999987 456899999


Q ss_pred             CCEEeccCCcE-EEEecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         86 DGTAITLGGRI-DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        86 ~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      ++..+...... ..........|.|.++..+|.|.|+|.|.|..+
T Consensus       135 ~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          135 ERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             TTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             CCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            98866543322 122223456899999999999999999999875

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.77  E-value=5.9e-17  Score=134.86  Aligned_cols=219  Identities=14%  Similarity=0.096  Sum_probs=149.9

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecC--CC----eEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP--PA----KVEWF   84 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~----~~~w~   84 (245)
                      ++|.|.+++..|+|.|+|.|.|..|...+..+.|.|..+|.+...+.... .....+.|.|......  .+    .+.|.
T Consensus       223 ~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~-~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~  301 (731)
T 2v5y_A          223 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLAS-VGATYLWIQLNANSINGDGPIVAREVEYC  301 (731)
T ss_dssp             EEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEEEE-ECSSCEEEECCCSSBSSCSCCCEEEEEEE
T ss_pred             EEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCcceec-cCCceEEEEeCCcccCCCCccEEEEEEEE
Confidence            56999999999999999999999886556778899998887655554443 3556788888753221  12    45565


Q ss_pred             ECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEE--eCCceeEE--EEEEEec----CCCCccccCccccCCC
Q psy12131         85 RDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS--NNLGSSQQ--FIQLSGI----PNIPVFQKSSRRLGPD  156 (245)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~--n~~g~~~~--~~~~~~~----~~~p~~~~~~~~~~~~  156 (245)
                      ..+     ..+..+. ......+.|.++.+.+.+.|+|.|.  |..|....  .+.+...    +.+|..... ......
T Consensus       302 ~~~-----~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~-~~~~~~  374 (731)
T 2v5y_A          302 TAS-----GSWNDRQ-PVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEV-VEVKSR  374 (731)
T ss_dssp             ESS-----SSCEEEE-ECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEE-EEECSS
T ss_pred             ECC-----CCceEEe-ccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEE-EeccCC
Confidence            432     1122221 2234678999999999999999999  98876542  2233322    233433322 245678


Q ss_pred             eeEEEEEeCC----CCCceEEEEEEEeecCCCCeEEE---eeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        157 GYRLVWQVDT----YSGIIQYLLKFREREELTPWRNI---VIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       157 ~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      ++.|+|.+..    ..++..|.+.|+... ...|...   .....      .....+.+.+|.+++.|.|+|.|.|..|.
T Consensus       375 sv~l~W~~p~~~~~~~~~~~y~v~y~~~~-~~~~~~~~~~~~~~~------~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~  447 (731)
T 2v5y_A          375 QITIRWEPFGYNVTRCHSYNLTVHYCYQV-GGQEQVREEVSWDTE------NSHPQHTITNLSPYTNVSVKLILMNPEGR  447 (731)
T ss_dssp             CEEEEEECCCHHHHCSSSCEEEEEEEEES-SSSEEEEEEEECCSS------CSSCEEEECSCCSSCEEEEEEEEECSSCE
T ss_pred             eEEEEEECCCcccccceeeeEEEEEEEcc-CCCCccceeEEEEec------CCcceEEECCCCCCCEEEEEEEEEcCCCC
Confidence            9999999842    356789999998865 2333221   11111      11267999999999999999999999999


Q ss_pred             CCCCcceEEecCCCCC
Q psy12131        230 SRPSKAYVFATEGAET  245 (245)
Q Consensus       230 ~~~s~~~~~~t~~~~~  245 (245)
                      |. |..+.++|...+|
T Consensus       448 s~-S~~~~~~T~~~~P  462 (731)
T 2v5y_A          448 KE-SQELIVQTDEDLP  462 (731)
T ss_dssp             EE-CCCEEEECCCCCC
T ss_pred             CC-CceEEEEccCCCC
Confidence            84 8889999876543

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.77  E-value=8.1e-19  Score=132.93  Aligned_cols=137  Identities=21%  Similarity=0.394  Sum_probs=105.6

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecC----CeEEe-ecceEEecCCCeEEEEEEEeecCCCeEE
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP----PEVSV-EKQWIHTAPDMRAEIICNVYANPPAKVE   82 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~----p~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~~   82 (245)
                      .+...|.|.+++.+|+|.|+|.+.|..|. ....+.|.|...    |.+.. .+....+..|+.+.|.|.+.+.|.|.+.
T Consensus       177 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~  255 (334)
T 1ry7_B          177 HQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQ  255 (334)
T ss_dssp             TTTTEEEECSCCGGGCCCEEEEEEETTEE-EEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEE
T ss_pred             cceEEEEECCCCcccCEEEEEEEEeCCCC-EEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEE
Confidence            34567999999999999999999998877 677888888753    33332 2345667899999999999999999999


Q ss_pred             EEE----CCEEeccCCcE--EEEe-------cCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCCCc
Q psy12131         83 WFR----DGTAITLGGRI--DMHV-------SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPV  145 (245)
Q Consensus        83 w~~----~~~~~~~~~~~--~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~  145 (245)
                      |++    ++..+......  .+..       ....+.|.|.++...|.|.|+|.|.|..|.....+.|.+.+.++.
T Consensus       256 W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~  331 (334)
T 1ry7_B          256 WLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEE  331 (334)
T ss_dssp             EEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSCCC
T ss_pred             EEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECCCC
Confidence            999    66655433221  1111       112247999999999999999999999999988888888766553

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.77  E-value=2.8e-18  Score=120.60  Aligned_cols=164  Identities=16%  Similarity=0.153  Sum_probs=106.0

Q ss_pred             EEecCCCeEEEEEE---EeecCCCeEEEEECCEEec-----------------cCCcEEEEecCceeEEEEccCCCCCCe
Q psy12131         59 IHTAPDMRAEIICN---VYANPPAKVEWFRDGTAIT-----------------LGGRIDMHVSSEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        59 ~~~~~g~~~~l~C~---~~~~~~~~~~w~~~~~~~~-----------------~~~~~~~~~~~~~~~l~i~~~~~~d~g  118 (245)
                      +.+..|+.+.|.|.   +.+.|.+.+.|++++....                 ....+.+........|.|.++..+|.|
T Consensus         3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   82 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG   82 (203)
T ss_dssp             CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCe
Confidence            46779999999996   4577889999999653211                 112344444556778999999999999


Q ss_pred             EEEEEEEeCCceeEEEEEEEecCCCCccccC---ccccCCCeeEEEEEeCCCCCceEEEEEEEeec-CC---CCeEEEee
Q psy12131        119 NYMCQASNNLGSSQQFIQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE-EL---TPWRNIVI  191 (245)
Q Consensus       119 ~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~  191 (245)
                      .|+|.+.|..|.....+.|.+.+ ||.+...   .....+..+.|.|.+.+.++. .. .|+++.+ ..   ..-..+..
T Consensus        83 ~Y~C~a~n~~g~~~~~~~l~V~~-p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P-~v-~W~~~~~~~~~~~~~~~r~~~  159 (203)
T 4fa8_A           83 NYLCRMKLGETEVTKQEHLSVVK-PLTLSVHSERSQFPDFSVLTVTCTVNAFPHP-HV-QWLMPEGVEPAPTAANGGVMK  159 (203)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEE-EEEEEEEEEECCSSCSCCEEEEEEEEEESCC-EE-EECCC------------CCEE
T ss_pred             EEEEEEEcCCCcEEEEEEEEecC-CceeeecceeEEEcCCCEEEEEEEcCCCCCC-EE-EEEECCeeecCcccccceEEE
Confidence            99999999999888888877764 3332221   334678899999999776433 22 2333322 00   00011112


Q ss_pred             CCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        192 PSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       192 ~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      ...+      ....+.+.++...+.+.|+|.|.|..|..+
T Consensus       160 ~~~g------~l~il~i~~v~~~D~G~YtC~A~N~~G~a~  193 (203)
T 4fa8_A          160 EKDG------SLSVAVDLSLPKPWHLPVTCVGKNDKEEAH  193 (203)
T ss_dssp             CTTS------CEEEEEEEEECSSCCCCEEEEEESSSCEEE
T ss_pred             eCCC------CEEEEEECCCCHHHCEEEEEEEEcCCCEEE
Confidence            1211      123344556777777777888999999764

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.77  E-value=7.1e-18  Score=115.99  Aligned_cols=122  Identities=15%  Similarity=0.192  Sum_probs=92.5

Q ss_pred             EEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCC-eEEEE
Q psy12131          6 LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWF   84 (245)
Q Consensus         6 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~w~   84 (245)
                      +..+...|.|.+++.+|+|.|+|.+.+..+   +..+.|.|..+|.....+ ...+.+|+.+.|.|.+.+.+++ .+.|+
T Consensus        49 ~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~---s~~~~l~V~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~~W~  124 (175)
T 1fnl_A           49 ISSQASSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLEVHIGWLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYL  124 (175)
T ss_dssp             EESSCSEEEESSCCGGGCEEEEEECSSSCC---CCCEEEEEECSSEEEECS-CSEEETTCCEEEEEEECTTCCCEEEEEE
T ss_pred             ccCCceEEEEeCCCcccCEEEEEEeeCCcc---cccEEEEEeCCCceeeCC-CceecCCCCEEEEEEcCCCCCceEEEEE
Confidence            334567799999999999999999998543   556778887665544443 3557799999999999877664 99999


Q ss_pred             ECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCce-eEEEEEEEe
Q psy12131         85 RDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS-SQQFIQLSG  139 (245)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~-~~~~~~~~~  139 (245)
                      +++..+...        .....|.|.++..+|.|.|+|.+.|..+. ....+.|.+
T Consensus       125 k~g~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V  172 (175)
T 1fnl_A          125 QNGKDRKYF--------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI  172 (175)
T ss_dssp             ETTEEEEEE--------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ECCeEccCC--------CCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEE
Confidence            999876421        12357999999999999999999997654 333444443

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.77  E-value=8.4e-18  Score=122.47  Aligned_cols=127  Identities=18%  Similarity=0.264  Sum_probs=95.8

Q ss_pred             cceEEEeec----ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec---------------CCeEEeecceEEec
Q psy12131          2 KEIELLYNR----ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---------------PPEVSVEKQWIHTA   62 (245)
Q Consensus         2 ~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~   62 (245)
                      +|+.+..+.    .+|.|.+++.+|+|.|+|.+.+..+........|.|..               +|.+...+....+.
T Consensus        67 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~  146 (253)
T 3uzq_A           67 GKATITADTSSNTAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVS  146 (253)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEEC
T ss_pred             CcEEEEeecCCCeEEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEe
Confidence            466666543    34999999999999999999986555334556677774               46677777778899


Q ss_pred             CCCeEEEEEEEeecCCC----eEEEEEC--CEEec------------cCCcEEEEecCceeEEEEccCCCCCCeEEEEEE
Q psy12131         63 PDMRAEIICNVYANPPA----KVEWFRD--GTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA  124 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~~----~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  124 (245)
                      +|+.+.|.|.+.+.+.+    .+.|++.  +....            ...++..........|.|.+++.+|.|.|.|.+
T Consensus       147 ~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~  226 (253)
T 3uzq_A          147 LGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQR  226 (253)
T ss_dssp             TTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEE
Confidence            99999999999988776    8999983  22111            123455544555678999999999999999999


Q ss_pred             EeCC
Q psy12131        125 SNNL  128 (245)
Q Consensus       125 ~n~~  128 (245)
                      .|..
T Consensus       227 ~n~~  230 (253)
T 3uzq_A          227 SNEV  230 (253)
T ss_dssp             CSSS
T ss_pred             ccCC
Confidence            9864

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.77  E-value=1.1e-18  Score=122.37  Aligned_cols=118  Identities=14%  Similarity=0.081  Sum_probs=80.2

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEec---CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR   85 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~   85 (245)
                      +..|.|.+++.+|+|.|+|.+.|..|.. .+..+.|.|..   +|.+...+. ..+.+|+.+.|.|.+.+.| +.+.|++
T Consensus        57 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~~~p-~~~~W~k  134 (196)
T 2d3v_A           57 KARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPS-PVVTSGENVTLQCGSRLRF-DRFILTE  134 (196)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC-SEEEEEE
T ss_pred             ccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccCC-ccccCCCcEEEEEEcCCCC-CEEEEEc
Confidence            4569999999999999999999876542 35678888876   566654443 4678999999999999888 8999999


Q ss_pred             CCEEeccCCcE-EEEe-cCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         86 DGTAITLGGRI-DMHV-SSEKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        86 ~~~~~~~~~~~-~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      ++..+...... .... ......|.|.++..+|.|.|.|.|.|..+
T Consensus       135 ~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          135 EGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             C---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             cCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            98766432111 1111 12346899999999999999999999764

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.77  E-value=6.6e-18  Score=120.13  Aligned_cols=190  Identities=15%  Similarity=0.184  Sum_probs=119.8

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCC--cEEEEecCce--eEEEEccCCCCCCeEEEEE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEK--HSLLVRHIKDTDFGNYMCQ  123 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~  123 (245)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ...+......  ..+.|.++...|.|.|+|.
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   87 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV   87 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEE
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEE
Confidence            57888888888889999999999999999999999999998876542  1222222211  1236788899999999999


Q ss_pred             EEeCCceeE---EEEEEEecCCCCcc-ccCccccCCCeeEEEEEe-CCCCCceEEEEEEEeec--CCCCeEEEeeCCCCC
Q psy12131        124 ASNNLGSSQ---QFIQLSGIPNIPVF-QKSSRRLGPDGYRLVWQV-DTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGS  196 (245)
Q Consensus       124 ~~n~~g~~~---~~~~~~~~~~~p~~-~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  196 (245)
                      +.|..|...   ..+.+...+..... ........+..+.|.|.+ .+.++. .+ .|+++..  ........  .... 
T Consensus        88 ~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~-~v-~W~~~g~~~~~~~~~~~--~~~~-  162 (217)
T 2vr9_A           88 AKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEP-TL-IWIKDGVPLDDLKAMSF--GASS-  162 (217)
T ss_dssp             EEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCC-EE-EEEETTEEECCCCCC-----CCC-
T ss_pred             EecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCC-eE-EEEECCcCCCccccccc--ccCC-
Confidence            999888653   23333332222111 112335678899999998 555433 23 3444432  10000000  0000 


Q ss_pred             CCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCC
Q psy12131        197 LAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEG  242 (245)
Q Consensus       197 ~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~  242 (245)
                      .........+.|.++...+.+.|+|.|.|..|....+..+.+....
T Consensus       163 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~~~  208 (217)
T 2vr9_A          163 RVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK  208 (217)
T ss_dssp             SEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC--
T ss_pred             cEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEEee
Confidence            0000011368899999999999999999999988777655554433

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.77  E-value=3.3e-17  Score=122.45  Aligned_cols=166  Identities=12%  Similarity=0.007  Sum_probs=115.3

Q ss_pred             ecceEEecCCCeEEEEEEEeec-------CCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         55 EKQWIHTAPDMRAEIICNVYAN-------PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        55 ~~~~~~~~~g~~~~l~C~~~~~-------~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .|....+..|+++.|.|.+.+.       |.+.+.|++++..+... ++.+. .+..+.|.|.++... .|.|.|.+.+.
T Consensus        10 ~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~-~~~~~-~~~~~~L~i~~~~~~-~g~Y~C~a~~~   86 (303)
T 1i1r_A           10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE-QYTII-NRTASSVTFTDIASL-NIQLTCNILTF   86 (303)
T ss_dssp             ESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG-GCEEE-ETTEEEEEECSCCCS-EEEEEEEEEET
T ss_pred             ccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChh-heeee-CCcEEEEEEcCcCCC-ceEEEEecccC
Confidence            4555678899999999999863       77899999999988644 33333 334568999999987 49999999885


Q ss_pred             Ccee--EE--EEEEEecCCCCccccCccccCCCeeEEEEEeCCC-CCceEEEEEEEeecCCCCeEEEeeCCCCCCCccee
Q psy12131        128 LGSS--QQ--FIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTY-SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIY  202 (245)
Q Consensus       128 ~g~~--~~--~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (245)
                      .+..  ..  .+.+...|.+|...... ......+.|+|.+..+ ..+..|.++|+... ...|........        
T Consensus        87 g~~~~~~~~~~l~v~~~P~~P~~l~~~-~~~~~~v~l~W~~~~~~~~~~~Y~v~~~~~~-~~~~~~~~~~~~--------  156 (303)
T 1i1r_A           87 GQLEQNVYGITIISGLPPEKPKNLSCI-VNEGKKMRCEWDGGRETHLETNFTLKSEWAT-HKFADCKAKRDT--------  156 (303)
T ss_dssp             TTEEEEEEEEEEEEECCCCCCEEEEEE-EETTSCCEEEEECCSCCSSCCEEEEEEEETT-EECCCEECCSSC--------
T ss_pred             CCcceEEEEEEEeccCCCCCCeeeEEE-ECCCCcEEEEccCCCCCCCCcCEEEEEEecC-CCCccCCCcCCC--------
Confidence            3221  12  23334456666644432 2445789999998432 34579999998643 222222111111        


Q ss_pred             eeEEEecCC-CCCceEEEEEEEEecCCCCCCC
Q psy12131        203 TQSYNITGL-QLFTQYEASVLAKNRFGWSRPS  233 (245)
Q Consensus       203 ~~~~~i~~l-~~~~~y~~~v~a~N~~G~~~~s  233 (245)
                      ...+.+.+| .+.+.|.|+|.|.|..|.+.++
T Consensus       157 ~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s~  188 (303)
T 1i1r_A          157 PTSCTVDYSTVYFVNIEVWVEAENALGKVTSD  188 (303)
T ss_dssp             TTEEECSSCCCTTSCEEEEEEEEETTEEEECC
T ss_pred             ceEEEECCcCcccccEEEEEEEEcCCCCcccC
Confidence            267999999 9999999999999999998643

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.77  E-value=4.8e-17  Score=115.08  Aligned_cols=176  Identities=18%  Similarity=0.205  Sum_probs=115.7

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEe------------ccCCcEEEEecCceeEEEEccCCCCCC
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAI------------TLGGRIDMHVSSEKHSLLVRHIKDTDF  117 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~  117 (245)
                      +.+...+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+            ....++....    ..|.|.++...|.
T Consensus         2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~v~~~D~   77 (212)
T 1f97_A            2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS----SGITFSSVTRKDN   77 (212)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET----TEEEESCCCGGGC
T ss_pred             ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec----eeEEEcccCcccC
Confidence            34455566778889999999999998899999999976442            1233443322    5799999999999


Q ss_pred             eEEEEEEEeCCc--eeEEEEEEEe--cCCCCccccCccccCCCeeEEEEE-eCCCCCceEEEEEEEeec-CCCCeE----
Q psy12131        118 GNYMCQASNNLG--SSQQFIQLSG--IPNIPVFQKSSRRLGPDGYRLVWQ-VDTYSGIIQYLLKFRERE-ELTPWR----  187 (245)
Q Consensus       118 g~y~C~~~n~~g--~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~-~~~~~~----  187 (245)
                      |.|+|.+.|..|  .....+.+.+  .|..+..........++.+.|.|. ..+.++. .+. |+++.. .-....    
T Consensus        78 G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~i~-W~~~~~~~l~~~~~~~~  155 (212)
T 1f97_A           78 GEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPS-EYS-WFKDGISMLTADAKKTR  155 (212)
T ss_dssp             EEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCC-EEE-EEETTEESBC-----CB
T ss_pred             eEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCC-EEE-EEeCCcccccccccccc
Confidence            999999999866  3444444444  444443333344577899999999 5555433 332 444321 000000    


Q ss_pred             -----EEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEe
Q psy12131        188 -----NIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       188 -----~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~  239 (245)
                           .......        ...+.|.++...+.+.|+|.|.|..|....+..+.+.
T Consensus       156 ~~~~~~~~~~~~--------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~  204 (212)
T 1f97_A          156 AFMNSSFTIDPK--------SGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD  204 (212)
T ss_dssp             SCSSSCEEECTT--------TCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEE
T ss_pred             cccCceeEecCC--------CceEEEEecChhhCcEEEEEEccccCCccccceEEEE
Confidence                 0111111        1568899999999999999999999988444444443

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.77  E-value=2.7e-17  Score=119.31  Aligned_cols=127  Identities=17%  Similarity=0.317  Sum_probs=94.8

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEecC---------------CeEEeecceEEe
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYP---------------PEVSVEKQWIHT   61 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~---------------p~~~~~~~~~~~   61 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|+|.+.+..+.. ....+.|.|..+               |.+...+....+
T Consensus        68 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  147 (247)
T 2ghw_B           68 GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSL  147 (247)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEE
T ss_pred             CcEEEEEeCCCCEEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEe
Confidence            46666653    3469999999999999999999873221 233456777754               335555666778


Q ss_pred             cCCCeEEEEEEEeecCCCeEEEEE--CCEEec------------cCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         62 APDMRAEIICNVYANPPAKVEWFR--DGTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        62 ~~g~~~~l~C~~~~~~~~~~~w~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .+|+.+.|.|.+.+.+.+.+.|++  ++..+.            ...++.+........|.|.++..+|.|.|.|.+.|.
T Consensus       148 ~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  227 (247)
T 2ghw_B          148 SPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSN  227 (247)
T ss_dssp             CTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSS
T ss_pred             cCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccC
Confidence            899999999999999989999998  444321            124555554555678999999999999999999985


Q ss_pred             C
Q psy12131        128 L  128 (245)
Q Consensus       128 ~  128 (245)
                      .
T Consensus       228 ~  228 (247)
T 2ghw_B          228 W  228 (247)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.77  E-value=2.6e-17  Score=115.23  Aligned_cols=180  Identities=11%  Similarity=0.131  Sum_probs=111.5

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .+|.+...+.. .+.+|+.+.|.|.+.+.+. .+.|++++..+..... ..........|.|.++..+|.|.|+|.+.|.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (196)
T 2d3v_A            4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQ-NPLEPKNKARFSIPSMTEHHAGRYRCYYYSP   80 (196)
T ss_dssp             CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEE-CCCSSTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccc-cccCCccccEEEeccCChhHCeEEEEEEeCC
Confidence            46777776654 6789999999999987665 9999999876542111 0011234678999999999999999999998


Q ss_pred             CceeE--EEEEEEec--CCCCccccC--ccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEe--eCCCCCCCc
Q psy12131        128 LGSSQ--QFIQLSGI--PNIPVFQKS--SRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIV--IPSDGSLAG  199 (245)
Q Consensus       128 ~g~~~--~~~~~~~~--~~~p~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  199 (245)
                      .|...  ..+.|.+.  +.+|.+...  .....++.+.|.|.+.+.++  .+ .|+++.. ...-....  ....     
T Consensus        81 ~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p~--~~-~W~k~g~-~~~~~~~~~~~~~~-----  151 (196)
T 2d3v_A           81 AGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFD--RF-ILTEEGD-HKLSWTLDSQLTPS-----  151 (196)
T ss_dssp             TEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEESSCCS--EE-EEEEC----CCEEEEECEECTT-----
T ss_pred             CCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcCCCCC--EE-EEEccCC-cccccccccccccC-----
Confidence            76432  23344433  334443322  24567889999999977653  33 3555543 11111110  1000     


Q ss_pred             ceeeeEEEecCCCCCceEEEEEEEEecCC---CCCCCcceEEe
Q psy12131        200 PIYTQSYNITGLQLFTQYEASVLAKNRFG---WSRPSKAYVFA  239 (245)
Q Consensus       200 ~~~~~~~~i~~l~~~~~y~~~v~a~N~~G---~~~~s~~~~~~  239 (245)
                      ......|.|.++...+.+.|+|.|.|..+   .+..|+.+.+.
T Consensus       152 ~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~  194 (196)
T 2d3v_A          152 GQFQALFPVGPVTPSHRWMLRCYGSRRHILQVWSEPSDLLEIP  194 (196)
T ss_dssp             SCEEEEEECCCCBTTBCEEEEEEEEETTEEEEECCCCCCEEEC
T ss_pred             CCceeEEEeeecCcccCeeEEEEEEccCCCCccCCCCccEEEE
Confidence            01236788999999999999999999876   46677776654

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.77  E-value=1.4e-17  Score=121.60  Aligned_cols=127  Identities=17%  Similarity=0.252  Sum_probs=94.0

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCC------Cc--eeeEEEEEEecCC---------------eEEe
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIG------ES--TSKNFIVNVIYPP---------------EVSV   54 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~------~~--~~~~~~l~v~~~p---------------~~~~   54 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|+|.+.+..|      ..  ....+.|.|..+|               .+..
T Consensus        65 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~  144 (257)
T 1f3r_B           65 SRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQ  144 (257)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCE
T ss_pred             CcEEEEEECCCCEEEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEc
Confidence            46666643    34799999999999999999998754      11  1234577887653               2333


Q ss_pred             ecceEEecCCCeEEEEEEEeecCCCeEEEEE--CCEEec------------cCCcEEEEecCceeEEEEccCCCCCCeEE
Q psy12131         55 EKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNY  120 (245)
Q Consensus        55 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  120 (245)
                      .+....+.+|+.+.|.|.+.+.+.+.+.|++  ++..+.            ...++.+........|.|.++..+|.|.|
T Consensus       145 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y  224 (257)
T 1f3r_B          145 SPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATY  224 (257)
T ss_dssp             ETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEE
T ss_pred             cCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEE
Confidence            4556678899999999999988888999999  444321            12355554444567899999999999999


Q ss_pred             EEEEEeCC
Q psy12131        121 MCQASNNL  128 (245)
Q Consensus       121 ~C~~~n~~  128 (245)
                      .|.+.|..
T Consensus       225 ~C~a~n~~  232 (257)
T 1f3r_B          225 FCYQYNNG  232 (257)
T ss_dssp             EEEEESSS
T ss_pred             EEEEeCCC
Confidence            99999965

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.76  E-value=4.9e-18  Score=117.72  Aligned_cols=115  Identities=11%  Similarity=0.100  Sum_probs=90.4

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTA   89 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~   89 (245)
                      ..+|.|.+++.+|+|.|+|.+.+..+     .+.|.|..   +.. +....+.+|+.+.|.|.+.+.|.|.+.|++++..
T Consensus        67 ~~~L~i~~v~~~D~G~Y~C~~~~~~~-----~~~l~V~~---~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~  137 (184)
T 2ny1_B           67 NFPLIIKNLKIEDSDTYICEVEDQKE-----EVQLLVFG---LTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGK  137 (184)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETTEEE-----EEEEEEEE---EEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSC
T ss_pred             eEEEEEecCCHHHCEEEEEEEEcCCC-----cEEEEEEE---ecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCc
Confidence            45599999999999999999997533     45566653   222 2234568999999999999899999999998754


Q ss_pred             eccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCC
Q psy12131         90 ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNI  143 (245)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~  143 (245)
                      +..          ....|.|.++..+|.|.|+|.+.|..+.....+.+.+...|
T Consensus       138 ~~~----------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p  181 (184)
T 2ny1_B          138 NIQ----------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ  181 (184)
T ss_dssp             EEE----------ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred             ccc----------CceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecC
Confidence            421          23479999999999999999999999888888777765433

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.76  E-value=7.1e-18  Score=117.36  Aligned_cols=114  Identities=17%  Similarity=0.243  Sum_probs=88.0

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEec---CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWF   84 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~   84 (245)
                      .+..|.|.+++.+|+|.|+|.+.+..+.. .+..+.|.|..   +|.+...+. ..+.+|+.+.|.|.+.+ +.+.+.|+
T Consensus        55 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~  132 (188)
T 1oll_A           55 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTFYCRLDT-ATSMFLLL  132 (188)
T ss_dssp             CEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEESC-SEEETTCEEEEEEECSS-SCSEEEEE
T ss_pred             ceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECCC-CccccCCEEEEEEEcCC-CCCEEEEE
Confidence            34569999999999999999998865432 46678888874   677665553 45789999999999865 45799999


Q ss_pred             ECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         85 RDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +++..+..    ..........|.|.+++.+|.|.|.|.+.|..
T Consensus       133 k~g~~~~~----~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          133 KEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             EESSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             ECCccccc----cccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            98865543    12233456789999999999999999999864

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.76  E-value=3.1e-17  Score=119.66  Aligned_cols=127  Identities=17%  Similarity=0.280  Sum_probs=96.3

Q ss_pred             cceEEEeec----ceEEEeccCCCCCEEEEEEEEcCCC---CceeeEEEEEEec----------------CCeEEeecce
Q psy12131          2 KEIELLYNR----ESLDLDRVTLKLAGLYQCIASNNIG---ESTSKNFIVNVIY----------------PPEVSVEKQW   58 (245)
Q Consensus         2 ~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~~----------------~p~~~~~~~~   58 (245)
                      +|+.+..+.    .+|.|.+++.+|+|.|+|.+.+..+   ........|.|..                +|.+...+..
T Consensus        68 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~  147 (256)
T 3umt_A           68 GKAILTVDKSSSTAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSS  147 (256)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSE
T ss_pred             ceEEEEEecCCCEEEEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCe
Confidence            466666432    3499999999999999999998721   1134456777774                6677777777


Q ss_pred             EEecCCCeEEEEEEEeecCCCeEEEEEC--CEEec------------cCCcEEEEecCceeEEEEccCCCCCCeEEEEEE
Q psy12131         59 IHTAPDMRAEIICNVYANPPAKVEWFRD--GTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA  124 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  124 (245)
                      ..+.+|+.+.|.|.+.+.+.+.+.|++.  +....            ...++.....+....|.|.++..+|.|.|.|.+
T Consensus       148 ~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~  227 (256)
T 3umt_A          148 LSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQ  227 (256)
T ss_dssp             EEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEE
T ss_pred             EEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEE
Confidence            8899999999999999988889999983  21111            124555555556678999999999999999999


Q ss_pred             EeCC
Q psy12131        125 SNNL  128 (245)
Q Consensus       125 ~n~~  128 (245)
                      .+..
T Consensus       228 ~~~~  231 (256)
T 3umt_A          228 YASS  231 (256)
T ss_dssp             CSSS
T ss_pred             eeCC
Confidence            9854

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.76  E-value=8.7e-18  Score=115.65  Aligned_cols=121  Identities=17%  Similarity=0.198  Sum_probs=91.8

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEe-ecCCCeEEEEEC
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVY-ANPPAKVEWFRD   86 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~w~~~   86 (245)
                      .++..|.|.+++.+|+|.|+|.+.+..+   +..+.|.|..++.....+ ...+.+|+.+.|.|.+. +.|.+.+.|+++
T Consensus        48 ~~~~~L~i~~v~~~d~G~Y~C~~~~~~~---s~~~~l~V~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  123 (176)
T 1f2q_A           48 ETNSSLNIVNAKFEDSGEYKCQHQQVNE---SEPVYLEVFSDWLLLQAS-AEVVMEGQPLFLRCHGWRNWDVYKVIYYKD  123 (176)
T ss_dssp             CCSSEEEECSCCGGGCEEEEEECTTSSC---CCCEEEEEECSSEEEEES-CSEEETTSCEEEEEEEGGGCCEEEEEEEET
T ss_pred             CCceEEEEeccceecCEEEEEEcCCccc---cccEEEEEeCcceeecCC-cceeeCCCCEEEEEEecCCCCceEEEEEEC
Confidence            3457799999999999999999987543   456777877655544443 34567999999999994 566679999999


Q ss_pred             CEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCce-eEEEEEEEec
Q psy12131         87 GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS-SQQFIQLSGI  140 (245)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~-~~~~~~~~~~  140 (245)
                      +..+....        ....|.|.++..+|.|.|+|.+.|..+. ....+.+.+.
T Consensus       124 g~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  170 (176)
T 1f2q_A          124 GEALKYWY--------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI  170 (176)
T ss_dssp             TEECCSCC--------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CEEEeeec--------CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEe
Confidence            98774321        2457999999999999999999997543 3344555554

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.76  E-value=9.2e-18  Score=120.46  Aligned_cols=120  Identities=24%  Similarity=0.358  Sum_probs=90.2

Q ss_pred             EEeecceEEEeccCCCCCEEEEEEEEcCC-CCceeeEEEEEEecCC---eEEeecceEEecCCCeE-EEEEEE-eecCCC
Q psy12131          6 LLYNRESLDLDRVTLKLAGLYQCIASNNI-GESTSKNFIVNVIYPP---EVSVEKQWIHTAPDMRA-EIICNV-YANPPA   79 (245)
Q Consensus         6 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~~~-~l~C~~-~~~~~~   79 (245)
                      +..++ .|.|.+++.+|+|.|+|.+.+.. +. ....+.|.|..+|   .+...+....+..|+.+ .|.|.+ .+.|.|
T Consensus        73 ~~~~~-~L~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p  150 (231)
T 2pet_A           73 LDSQG-RLVLAEAQVGDERDYVCVVRAGAAGT-AEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAP  150 (231)
T ss_dssp             ECTTC-CEEESSCCGGGCEEEEEEEECGGGCE-EEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCC
T ss_pred             cCCCc-eEEEcccCcccCceEEEEEEecCCCc-eEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCC
Confidence            44334 49999999999999999999886 44 6788889998764   44444455556788888 999999 899999


Q ss_pred             eEEEEECCEEeccCC----cEEEEec----Cc-----eeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         80 KVEWFRDGTAITLGG----RIDMHVS----SE-----KHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        80 ~~~w~~~~~~~~~~~----~~~~~~~----~~-----~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .+.|++++..+....    ++.+...    ..     .+.|.|.....+|.|.|+|.|.|.
T Consensus       151 ~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          151 KITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             EEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             EEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            999999999887654    3333221    01     156778755555699999999994

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.76  E-value=2.3e-19  Score=136.72  Aligned_cols=206  Identities=12%  Similarity=0.080  Sum_probs=138.3

Q ss_pred             CCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEec
Q psy12131         22 LAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS  101 (245)
Q Consensus        22 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  101 (245)
                      |.|.|+|.+.+...     .+.+.+..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....  ....
T Consensus       136 ~~~~~~C~~~~~l~-----~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~  208 (347)
T 2ifg_A          136 PEQKLQCHGQGPLA-----HMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM--KSGG  208 (347)
T ss_dssp             GGGCCCCSSSSCSS-----CCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC--CCCC
T ss_pred             cccCCCCCCChHHh-----cCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccc--ccee
Confidence            57889998877222     1223344688888888778889999999999999999999999998764332110  0122


Q ss_pred             CceeEEEEccCCCCCCe-EEEEEEEeCCceeEEEEEEEecCCCCccccCccccCCCeeEEEEEeCCCCCceEEEEEEEee
Q psy12131        102 SEKHSLLVRHIKDTDFG-NYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRER  180 (245)
Q Consensus       102 ~~~~~l~i~~~~~~d~g-~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  180 (245)
                      .....|.|.++...|.| .|+|.+.|..|.....+.+.+... |.+ .......+..+.|.|.+.+.++. .+ .|+++.
T Consensus       209 ~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~-P~i-~~~~~~~g~~v~l~C~~~g~P~p-~i-~W~~~g  284 (347)
T 2ifg_A          209 LPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFP-ASV-QLHTAVEMHHWCIPFSVDGQPAP-SL-RWLFNG  284 (347)
T ss_dssp             SSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEE-EEE-EECCCEESSSEEEEEEEEEESCC-EE-EEEETT
T ss_pred             cccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCC-Cee-eeccCccCceEEEEEEeeecCCC-cE-EEEeCC
Confidence            34668999999999999 999999999988877776666433 332 12223567899999999766433 23 244443


Q ss_pred             c--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEe
Q psy12131        181 E--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       181 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~  239 (245)
                      .  .............+. ........+.|.++...+.+.|+|.|.|.+|....+..+.|.
T Consensus       285 ~~l~~~~~~~~~~~~~~~-~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  344 (347)
T 2ifg_A          285 SVLNETSFIFTEFLEPAA-NETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM  344 (347)
T ss_dssp             EECCCCSSEEEEECCCCT-TCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSC
T ss_pred             EECCCCcceeeEEEeecC-CCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEec
Confidence            3  122222221111000 111223568999999999999999999999987666555554

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.76  E-value=6.2e-19  Score=133.04  Aligned_cols=215  Identities=11%  Similarity=0.033  Sum_probs=120.1

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE---ecCCeEE-eecceEEecCCCeEEEEEEEeec-CCC---eEEE
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV---IYPPEVS-VEKQWIHTAPDMRAEIICNVYAN-PPA---KVEW   83 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v---~~~p~~~-~~~~~~~~~~g~~~~l~C~~~~~-~~~---~~~w   83 (245)
                      .|.|.++..+|+|.|+|.|.|..+. ....+.+.+   ...|.+. ..+....+..|+.+.|.|.+.+. |.+   .+.|
T Consensus        73 ~l~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W  151 (323)
T 2wqr_A           73 ELTLSQKHWLSDRTYTCQVTYQGHT-FEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTW  151 (323)
T ss_dssp             EEEEEHHHHHTTCCEEEEEEETTEE-EEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEE
T ss_pred             EEEEcHHHcCCCCcEEEEEEeCCCC-cceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEE
Confidence            4788888888999999999997654 233332211   1234332 33434456789999999999886 456   8999


Q ss_pred             EECC-EEeccCCcEEEEe-cC---ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe---cCCCCcccc---Cccc
Q psy12131         84 FRDG-TAITLGGRIDMHV-SS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG---IPNIPVFQK---SSRR  152 (245)
Q Consensus        84 ~~~~-~~~~~~~~~~~~~-~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~---~~~~p~~~~---~~~~  152 (245)
                      ++++ ..+.......... .+   ..+.|.|.++..+|.|.|.|.+.|..+.....+.+..   ...+|.+..   ....
T Consensus       152 ~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~  231 (323)
T 2wqr_A          152 SRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWP  231 (323)
T ss_dssp             EETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCT
T ss_pred             EECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHH
Confidence            9964 4433222111111 11   2347999999999999999999998644333344322   123333221   1122


Q ss_pred             cCCCeeEEEEEeCC-CCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        153 LGPDGYRLVWQVDT-YSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       153 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      ..++.+.|.|.+.+ +++... ..|+++..  ...... ...........-.....+.|......+...|.|.|.|..+.
T Consensus       232 ~~g~~~~l~C~~~g~~p~~~~-v~W~k~g~~l~~~~~~-~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          232 GSRDKRTLACLIQNFMPEDIS-VQWLHNEVQLPDARHS-TTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             TCTTEEEEEEEEEEEBSSCCE-EEEEETTEECCGGGEE-ECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             hcCCcEEEEEEeeeeeCCCcE-EEEEECCEECCCCcee-ecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            34889999999965 333222 23555433  111111 10000000000011234666655554445555559999876

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.76  E-value=4.5e-18  Score=120.66  Aligned_cols=130  Identities=18%  Similarity=0.231  Sum_probs=93.1

Q ss_pred             cceEEEeec--ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec---CCeEEeecceEEecCCCeEEEEEEEee-
Q psy12131          2 KEIELLYNR--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYA-   75 (245)
Q Consensus         2 ~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~-   75 (245)
                      +|+.+...+  .+|.|.+++.+|+|.|+|.+.+..+........|.|..   +|.+...+.......|+.+.|.|.+.+ 
T Consensus        60 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~  139 (213)
T 3d9a_L           60 SRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNF  139 (213)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE
T ss_pred             ccEEEEcCCCEEEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeee
Confidence            355555433  37999999999999999999988765333345677765   677666443333447889999999987 


Q ss_pred             cCCC-eEEEEECCEEeccCCcEEE--EecC-----ceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131         76 NPPA-KVEWFRDGTAITLGGRIDM--HVSS-----EKHSLLVRHIKDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus        76 ~~~~-~~~w~~~~~~~~~~~~~~~--~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  131 (245)
                      .|.+ .+.|++++..+........  ....     ..+.|.|.++..+|.|.|+|.|.|.....
T Consensus       140 ~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          140 YPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             BSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             cCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            5555 8999999988765411111  0011     13489999999999999999999986553

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.76  E-value=1.4e-17  Score=118.19  Aligned_cols=129  Identities=15%  Similarity=0.127  Sum_probs=95.5

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeE-EeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV-SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTA   89 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~   89 (245)
                      .+|.|.+++.+|+|.|+|.+.+..+........+.+..++.. ........+..+..+.+.|.+.+.|.|.+.|++++..
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~  158 (218)
T 4frw_A           79 GSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKG  158 (218)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCC
T ss_pred             EEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcc
Confidence            469999999999999999999876654445555555544333 3344556677899999999999999999999998876


Q ss_pred             eccCCcEEEEe-cCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         90 ITLGGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        90 ~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      +.......... ....+.|.|..+...|.|.|+|.|.|..|.....+++.+
T Consensus       159 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v  209 (218)
T 4frw_A          159 TTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL  209 (218)
T ss_dssp             EEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             cccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence            65432221100 012357999999999999999999999988776666553

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.76  E-value=9.3e-18  Score=120.17  Aligned_cols=128  Identities=13%  Similarity=0.074  Sum_probs=85.4

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEee-cCCCeEEEEECC-
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA-NPPAKVEWFRDG-   87 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~w~~~~-   87 (245)
                      ..+|.|.+++.+|+|.|+|.|.|..|. ....+.+.+.  +.+...+....+..|..+.+.|.+.| .|.|.+.|++++ 
T Consensus        82 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~-~~~~v~~~~~--~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~  158 (226)
T 4f80_A           82 KAALRIHNVTASDSGKYLCYFQDGDFY-EKALVELKVA--ALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKG  158 (226)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE--BCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTS
T ss_pred             eEEEEEeeCchHHCeeEEEEEECCCcE-EEEEEEEeec--cceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCc
Confidence            356999999999999999999997665 4444444443  33333344456678999999999988 589999999865 


Q ss_pred             EEeccCCcEEEEec-CceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131         88 TAITLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus        88 ~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      ..+........... +.-..+.+..+..+|.|.|+|.|.|..|...+.+.+.+.
T Consensus       159 ~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~  212 (226)
T 4f80_A          159 ENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIA  212 (226)
T ss_dssp             CBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCC
T ss_pred             eEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEEC
Confidence            33332222112211 111233344567889999999999999988888777664

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.76  E-value=8.1e-18  Score=119.72  Aligned_cols=112  Identities=16%  Similarity=0.174  Sum_probs=88.5

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEec---CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECC
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDG   87 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~   87 (245)
                      .|.|.+++.+|+|.|+|.+.|..+.. .+..+.|.|..   +|.+...+ ...+.+|+.+.|.|...+.+.+.+.|++++
T Consensus        65 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g  143 (218)
T 1uct_A           65 EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEG  143 (218)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETT
T ss_pred             EEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECC
Confidence            79999999999999999999976532 45667888875   56665555 346789999999997777778899999998


Q ss_pred             EEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         88 TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ..+...    .........|.|.++..+|.|.|.|.+.|..
T Consensus       144 ~~~~~~----~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          144 ELSLPQ----HQSGEHPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             CSSCCS----EEECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             Cccccc----ccCCCccCEEEEccCCcccCEEEEEEEEcCC
Confidence            766542    1123345689999999999999999999853

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.76  E-value=2.1e-17  Score=119.27  Aligned_cols=126  Identities=17%  Similarity=0.198  Sum_probs=90.4

Q ss_pred             ceEEEe---ecceEEEeccCCCCCEEEEEEEEcCCCCc----eeeEEEEEEecCC------------eEEeecceEEecC
Q psy12131          3 EIELLY---NRESLDLDRVTLKLAGLYQCIASNNIGES----TSKNFIVNVIYPP------------EVSVEKQWIHTAP   63 (245)
Q Consensus         3 ~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~~l~v~~~p------------~~~~~~~~~~~~~   63 (245)
                      |+.+..   +..+|.|.+++.+|+|.|+|.+.+..|..    ......|.|...+            .+...+....+.+
T Consensus        62 r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~  141 (238)
T 2p1y_A           62 GYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWE  141 (238)
T ss_dssp             TCEEECCSSSBCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEET
T ss_pred             eEEEEccCCceEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeC
Confidence            555553   34579999999999999999999875421    1234567776543            4555666777899


Q ss_pred             CCeEEEEEEEeecCCCeEEEEECCE-----Ee---------ccCCcEEEE--ecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         64 DMRAEIICNVYANPPAKVEWFRDGT-----AI---------TLGGRIDMH--VSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        64 g~~~~l~C~~~~~~~~~~~w~~~~~-----~~---------~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      |+.+.|.|.+.+.|.+.+.|++++.     .+         ....++.+.  .......|.|.++..+|.|.|.|.+.|.
T Consensus       142 G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  221 (238)
T 2p1y_A          142 GETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDT  221 (238)
T ss_dssp             TSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             CCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeC
Confidence            9999999999999999999998531     11         112344443  2334578999999999999999999997


Q ss_pred             C
Q psy12131        128 L  128 (245)
Q Consensus       128 ~  128 (245)
                      .
T Consensus       222 ~  222 (238)
T 2p1y_A          222 N  222 (238)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.76  E-value=5e-18  Score=128.38  Aligned_cols=125  Identities=22%  Similarity=0.393  Sum_probs=103.3

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeec-ceEEecCCCeEEEEEEEeecCCCe-EEEEECCE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-QWIHTAPDMRAEIICNVYANPPAK-VEWFRDGT   88 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~-~~w~~~~~   88 (245)
                      +.|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|..+|.+...+ ....+..|+.+.|.|.+.+.|.|. +.|++++.
T Consensus       194 ~~L~i~~~~~~d~G~Y~C~a~n~~~~-~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~  272 (331)
T 3u83_A          194 SRYRLVPSREAHQQSLACIVNYHMDR-FKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNG  272 (331)
T ss_dssp             EEEEECCCGGGTTCEEEEEEEETTEE-EEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTB
T ss_pred             EEEEEEeccccCCCEEEEEEecCCCc-ceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCC
Confidence            34888888999999999999998876 6788999999888877543 344577899999999999999997 99999988


Q ss_pred             EeccCCcEEEEecCceeEEEEc-cCCCCCCeEEEEEEEeCCceeEEEEEEEecCC
Q psy12131         89 AITLGGRIDMHVSSEKHSLLVR-HIKDTDFGNYMCQASNNLGSSQQFIQLSGIPN  142 (245)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~  142 (245)
                      .+....  ..    ....|.|. ++..+|.|.|+|.|.|..|.....+.|.+...
T Consensus       273 ~~~~~~--~~----~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  321 (331)
T 3u83_A          273 SLPKGV--EA----QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEA  321 (331)
T ss_dssp             SCCTTE--EE----ETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC-
T ss_pred             cccccc--ee----cCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEecc
Confidence            765432  11    23479999 89999999999999999999988888877643

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.76  E-value=1.4e-17  Score=114.53  Aligned_cols=169  Identities=14%  Similarity=0.134  Sum_probs=113.3

Q ss_pred             ecCCeEEeecceEEecCCCeEEEEEEEeecCCC-eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         47 IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        47 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      ..+|.+...+....+.+|+.+.|.|.+.+.+.+ .+.|++++..+...          ...|.|.++..+|.|.|+|.+.
T Consensus         2 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~   71 (176)
T 1f2q_A            2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET----------NSSLNIVNAKFEDSGEYKCQHQ   71 (176)
T ss_dssp             --CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC----------SSEEEECSCCGGGCEEEEEECT
T ss_pred             CCCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC----------ceEEEEeccceecCEEEEEEcC
Confidence            356777777777778999999999999888775 69999999876642          3479999999999999999999


Q ss_pred             eCCceeEEEEEEEecCCCCccc-cCccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeee
Q psy12131        126 NNLGSSQQFIQLSGIPNIPVFQ-KSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQ  204 (245)
Q Consensus       126 n~~g~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (245)
                      |..+.....+.+.  +.+.... .......++.+.|.|...++.|...+. |+++..      .+.....        ..
T Consensus        72 ~~~~s~~~~l~V~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~-W~~~g~------~~~~~~~--------~~  134 (176)
T 1f2q_A           72 QVNESEPVYLEVF--SDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVI-YYKDGE------ALKYWYE--------NH  134 (176)
T ss_dssp             TSSCCCCEEEEEE--CSSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEE-EEETTE------ECCSCCC--------SS
T ss_pred             CccccccEEEEEe--CcceeecCCcceeeCCCCEEEEEEecCCCCceEEE-EEECCE------EEeeecC--------CC
Confidence            9776555555544  2222211 123456889999999996554543343 554432      1111111        15


Q ss_pred             EEEecCCCCCceEEEEEEEEecCCC-CCCCcceEEecCC
Q psy12131        205 SYNITGLQLFTQYEASVLAKNRFGW-SRPSKAYVFATEG  242 (245)
Q Consensus       205 ~~~i~~l~~~~~y~~~v~a~N~~G~-~~~s~~~~~~t~~  242 (245)
                      .+.|.++...+.+.|+|.|.|..|. ...+..+.+...|
T Consensus       135 ~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p  173 (176)
T 1f2q_A          135 NISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP  173 (176)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSC
T ss_pred             eEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCC
Confidence            7889999999999999999997443 2233345554443

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.76  E-value=2e-17  Score=123.97  Aligned_cols=122  Identities=14%  Similarity=0.258  Sum_probs=95.2

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE---------------------ecCCeEEeecceEEecCCCeEEEE
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV---------------------IYPPEVSVEKQWIHTAPDMRAEII   70 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v---------------------~~~p~~~~~~~~~~~~~g~~~~l~   70 (245)
                      .|.|.+++.+|+|.|+|.+.+...   .....+.+                     ..+|.+..... ..+..|+.+.|.
T Consensus       167 ~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~v~~G~~~~l~  242 (312)
T 2y23_A          167 EMFMEKLQDEDEGTYTFQLQDGKA---TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS-WEVTGECNVLLK  242 (312)
T ss_dssp             EEEESCCCGGGCEEEEEEEESSSC---EEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEE-EEEETTTEEEEE
T ss_pred             EEEEccCCcccCEeEEEEEEeCCc---eEEEEEEEcchhhhhhcccccccccchhhccCCceeecce-EEEeCCCEEEEE
Confidence            399999999999999999986432   33343443                     12365554333 667899999999


Q ss_pred             EEEeecCCC-eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         71 CNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        71 C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      |.+.+.|.| .+.|++++..+....++.+.  .....|.|.++..+|.|.|.|.|.|..|.....+.|.+
T Consensus       243 C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i  310 (312)
T 2y23_A          243 CKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD  310 (312)
T ss_dssp             EEEESCCSSCEEEEEETTEEEEEECCC------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECS
T ss_pred             EEEcCCCCCCEEEEeeCCEECCCCCcEEEE--CCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEe
Confidence            999999988 99999999988765555543  34578999999999999999999999999988887764

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.76  E-value=3.4e-17  Score=101.59  Aligned_cols=92  Identities=18%  Similarity=0.348  Sum_probs=80.4

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCC--cEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      ||.+...+..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....  ++.+...+....|.|.++..+|.|.|+|.|.|
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   84 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGN   84 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEEE
Confidence            6777777778889999999999999999999999999999887543  56777777788999999999999999999999


Q ss_pred             CCceeEEEEEEEec
Q psy12131        127 NLGSSQQFIQLSGI  140 (245)
Q Consensus       127 ~~g~~~~~~~~~~~  140 (245)
                      ..|.....+.|.+.
T Consensus        85 ~~G~~~~~~~l~V~   98 (100)
T 3knb_A           85 EFGSDSATVNIHIR   98 (100)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEE
Confidence            99998888877764

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.76  E-value=5.3e-18  Score=133.38  Aligned_cols=167  Identities=13%  Similarity=0.128  Sum_probs=106.2

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE------------------ecCCeEEeecceE-E-ecCCCeEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV------------------IYPPEVSVEKQWI-H-TAPDMRAEII   70 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v------------------~~~p~~~~~~~~~-~-~~~g~~~~l~   70 (245)
                      +.|.|.+++.+| |.|+|.|.|..+. ......+.+                  ..+|.+...+... . +..|+.+.|.
T Consensus       184 s~L~i~~~~~~d-g~Y~C~a~n~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~  261 (444)
T 1igt_B          184 SSVTVTSSTWPS-QSITCNVAHPASS-TKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVT  261 (444)
T ss_dssp             EEEEECSTTTTT-SCCEEEEEETTTT-EEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEE
T ss_pred             EEEEEchhhcCC-CeEEEEEEeCCCC-cceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEE
Confidence            459999999999 9999999998876 333333322                  1256553333222 2 4789999999


Q ss_pred             EEEeecC----CCeEEEEECCEEeccCCcE--EEEecC---ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE---
Q psy12131         71 CNVYANP----PAKVEWFRDGTAITLGGRI--DMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS---  138 (245)
Q Consensus        71 C~~~~~~----~~~~~w~~~~~~~~~~~~~--~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~---  138 (245)
                      |.+.|.+    .+.+.|++++..+......  .....+   ..+.|.|.++..+|.|.|.|.|.|..+.......+.   
T Consensus       262 C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~  341 (444)
T 1igt_B          262 CVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPK  341 (444)
T ss_dssp             EEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCC
T ss_pred             EEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccC
Confidence            9999884    3599999999877543211  111111   245799999999999999999999987653322332   


Q ss_pred             ecCCCCccccC---ccccCCCeeEEEEEeCCC-CCceEEEEEEEee
Q psy12131        139 GIPNIPVFQKS---SRRLGPDGYRLVWQVDTY-SGIIQYLLKFRER  180 (245)
Q Consensus       139 ~~~~~p~~~~~---~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~  180 (245)
                      ....+|.+...   .....+..+.|.|.+.+. ++... ..|+++.
T Consensus       342 ~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~-v~W~k~g  386 (444)
T 1igt_B          342 GSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIY-VEWTNNG  386 (444)
T ss_dssp             CCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCE-EEEEETT
T ss_pred             CCCCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCE-EEEEECC
Confidence            22334443221   112334459999999663 33222 3355553

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.76  E-value=1.1e-16  Score=126.95  Aligned_cols=154  Identities=12%  Similarity=0.052  Sum_probs=98.8

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe------------------cCCeEEee-cceEEecCCCeEEEEEE
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI------------------YPPEVSVE-KQWIHTAPDMRAEIICN   72 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~------------------~~p~~~~~-~~~~~~~~g~~~~l~C~   72 (245)
                      .|.|..+..+|+|.|+|.|.|..+......+.|.|.                  .+|.+... +....+.+|+.+.|.|.
T Consensus       191 ~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~  270 (475)
T 1iga_A          191 QLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCT  270 (475)
T ss_pred             EEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEE
Confidence            488999999999999999999876433444544331                  24444222 22223578999999999


Q ss_pred             EeecCC---CeEEEEECCEEeccCCc--EEEEecC---ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE--ecCC
Q psy12131         73 VYANPP---AKVEWFRDGTAITLGGR--IDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--GIPN  142 (245)
Q Consensus        73 ~~~~~~---~~~~w~~~~~~~~~~~~--~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~--~~~~  142 (245)
                      +.|.++   +.+.| . +..+.....  ......+   ..+.|.|..+...|.|.|+|.+.|..|.......+.  ....
T Consensus       271 ~~g~~p~~~~~i~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~  348 (475)
T 1iga_A          271 LTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTF  348 (475)
T ss_pred             EEcccCCCceEEEE-C-CCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCC
Confidence            998754   58999 4 333321111  0111011   245799999999999999999999988754433442  2234


Q ss_pred             CCccccCc----cccCCCeeEEEEEeCCC
Q psy12131        143 IPVFQKSS----RRLGPDGYRLVWQVDTY  167 (245)
Q Consensus       143 ~p~~~~~~----~~~~~~~~~l~~~~~~~  167 (245)
                      +|.+....    ....+..+.|.|.+.+.
T Consensus       349 ~P~v~~~~~~~~~v~~g~~~~L~C~~~g~  377 (475)
T 1iga_A          349 RPEVHLLPPPSEELALNELVTLTCLARGF  377 (475)
T ss_pred             CCeEEEECCChHHhccCCceEEEEEEeee
Confidence            44432221    13467789999999664

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.75  E-value=1.8e-17  Score=114.25  Aligned_cols=116  Identities=14%  Similarity=0.299  Sum_probs=86.6

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEecC---CeEEeecceEEecCCCeEEEEEEEeecC
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYP---PEVSVEKQWIHTAPDMRAEIICNVYANP   77 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~~   77 (245)
                      +|+.+..++ +|.|.+++.+|+|.|+|.+.|..|.. ..+.+.|.|..+   |.+..        .+..+.|.|.+.+.|
T Consensus        58 ~R~~~~~ng-sL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~~p  128 (182)
T 1hnf_A           58 DTYKLFKNG-TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISW--------TCINTTLTCEVMNGT  128 (182)
T ss_dssp             TTEEECTTS-CEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSSCS
T ss_pred             CeEEECCCC-CEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcCCCCEEEE--------ccCcEEEEeEccCCC
Confidence            577777655 59999999999999999999987764 246778888753   33322        233689999999888


Q ss_pred             CCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12131         78 PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL  137 (245)
Q Consensus        78 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~  137 (245)
                      .+.+.|++++..+ ...         ...+.+.. ...|.|.|+|.|.|..|.......+
T Consensus       129 ~~~~~W~~~g~~l-~~~---------~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          129 DPELNLYQDGKHL-KLS---------QRVITHKW-TTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             SCEEEEEESSCEE-EEE---------SSCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             CCEEEEEECCEEC-CCC---------CcEEEEec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence            9999999999877 111         11233332 4678999999999999987766554

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.75  E-value=4e-16  Score=109.65  Aligned_cols=166  Identities=10%  Similarity=0.040  Sum_probs=103.2

Q ss_pred             EEecCCCeEEEEEEEeecCCCeEEEEECC-EEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12131         59 IHTAPDMRAEIICNVYANPPAKVEWFRDG-TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL  137 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~  137 (245)
                      ..+.+|+.+.|.|.+.|.|.|.+.|++.. ..+  ...  ....+....|.|.++..+|.|.|.|.+.|..|.....+.|
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~--~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l   86 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL--NGK--VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV   86 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCC--SSE--EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc--cce--EEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEE
Confidence            34458999999999999999999999843 211  111  1223345679999999999999999999998877776666


Q ss_pred             Eec--CCCCccccCccccCCCeeEEEEEeCCCCCceEE-EEEEEeecCCCCeEEEeeCCC-CCCCcceeeeEEEecCCCC
Q psy12131        138 SGI--PNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQY-LLKFREREELTPWRNIVIPSD-GSLAGPIYTQSYNITGLQL  213 (245)
Q Consensus       138 ~~~--~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~  213 (245)
                      .+.  |..+.+........|+.+.|.|.+.+..|.... ..|+++..   .......... ...........+.+.....
T Consensus        87 ~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~---~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~  163 (202)
T 1vca_A           87 EIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDH---LMKSQEFLEDADRKSLETKSLEVTFTPVIE  163 (202)
T ss_dssp             EEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTE---EEEEEECCSCCSSCCCEEEEEEEEECCCGG
T ss_pred             EEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCe---ECcccccccccCcCcceEEEEEEEEEeeec
Confidence            654  333333333446788999999999665443222 23454432   1111111000 0000111234456666655


Q ss_pred             CceEEEEEEEEecCCCCC
Q psy12131        214 FTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       214 ~~~y~~~v~a~N~~G~~~  231 (245)
                      .+...|+|.|.|.+|...
T Consensus       164 d~~g~ytC~A~n~~~~~~  181 (202)
T 1vca_A          164 DIGKVLVCRAKLHIDEMD  181 (202)
T ss_dssp             GTTCEEEEEEEECSCCCT
T ss_pred             cCCCeEEEEEEccccCCC
Confidence            555566666999998753

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.75  E-value=2e-17  Score=117.19  Aligned_cols=133  Identities=18%  Similarity=0.242  Sum_probs=92.9

Q ss_pred             ceEEEee--cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe----cCCeEEeecceEEecCCCeEEEEEEEeec
Q psy12131          3 EIELLYN--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVYAN   76 (245)
Q Consensus         3 ~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~   76 (245)
                      |+.+...  ...|.|.+++.+|+|.|+|.+.+..+........|.|.    .+|.+...+.......|+.+.|.|.+.+.
T Consensus        63 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~  142 (212)
T 1q0x_L           63 RFSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDF  142 (212)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEE
T ss_pred             cEEEEeeCCEEEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEE
Confidence            5555432  34799999999999999999998765323344567774    46776654433334578999999999885


Q ss_pred             CCC--eEEEEECCEEeccCCcEE--EEecC----ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131         77 PPA--KVEWFRDGTAITLGGRID--MHVSS----EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI  135 (245)
Q Consensus        77 ~~~--~~~w~~~~~~~~~~~~~~--~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  135 (245)
                      +++  .+.|++++..+.......  .....    ..+.|.|.....+|.|.|+|.+.|......+.+
T Consensus       143 ~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~v  209 (212)
T 1q0x_L          143 YPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKTL  209 (212)
T ss_dssp             BSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEEE
T ss_pred             eCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeeee
Confidence            443  899999998876542110  11111    124688888888899999999999876654443

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.75  E-value=8.2e-18  Score=116.63  Aligned_cols=116  Identities=14%  Similarity=0.175  Sum_probs=88.8

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCC-ceeeEEEEEEec---CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEE
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEW   83 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w   83 (245)
                      .++..|.|.+++.+|+|.|+|.+.|..|. ..+..+.|.|..   +|.+...+ ...+.+|+.+.|.|.+.+. .+.+.|
T Consensus        49 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~-~~~~~w  126 (184)
T 2gi7_A           49 QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYG-FDQFAL  126 (184)
T ss_dssp             ESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSC-CCEEEE
T ss_pred             CcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCC-CcEEEE
Confidence            34567999999999999999999997653 245677888853   56666555 3457789999999998754 469999


Q ss_pred             EECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         84 FRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      ++++..+.......    .....|.|.++..+|.|.|+|.+.|..+
T Consensus       127 ~k~g~~~~~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          127 YKEGDPAPYKNPER----WYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             EECCCCTTSCCCCE----EEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             EECCCcCcceecCC----CceEEEEEccCCccCCeEEEEEEEeCCC
Confidence            99988765432211    1345788999999999999999999753

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.75  E-value=2e-17  Score=115.00  Aligned_cols=176  Identities=13%  Similarity=0.102  Sum_probs=113.7

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEecc--CCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL--GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  ..++....   ...|.|.++...|.|.|+|.+.+
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~   78 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLA---NNNLQILNINKSDEGIYRCEGRV   78 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECT---TSCEEETTCCGGGCEEEEEEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEec---CCCEEEeeCCHhHCcEEEEEEEE
Confidence            46666667777889999999999999999999999998877653  33443322   34699999999999999999999


Q ss_pred             CCceeE--EEEEEEecCCCCcccc----CccccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCC
Q psy12131        127 NLGSSQ--QFIQLSGIPNIPVFQK----SSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLA  198 (245)
Q Consensus       127 ~~g~~~--~~~~~~~~~~~p~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  198 (245)
                      ..+...  ..+.+.+...|.....    ......+..+.|.|.+.+.++. .+ .|+++..  ........  ....   
T Consensus        79 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~-~v-~W~~~g~~~~~~~~~~~--~~~~---  151 (189)
T 2v5t_A           79 EARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEP-AI-SWFRNGKLIEENEKYIL--KGSN---  151 (189)
T ss_dssp             TTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCC-EE-EEEETTEECCCSSSEEE--ETTT---
T ss_pred             cCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCC-eE-EEEECCEECcCCCcEEE--ecCC---
Confidence            864322  3333333221111111    1234568899999999665433 23 3455433  11111111  1111   


Q ss_pred             cceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEe
Q psy12131        199 GPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       199 ~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~  239 (245)
                           ..+.|.++...+.+.|+|.|.|..|....+..+.+.
T Consensus       152 -----~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          152 -----TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             -----TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -----CEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence                 468899999999999999999999987766655543

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.75  E-value=1.3e-17  Score=118.05  Aligned_cols=129  Identities=19%  Similarity=0.192  Sum_probs=90.9

Q ss_pred             cceEEEee--cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec---CCeEEeecceEEecCCCeEEEEEEEeec
Q psy12131          2 KEIELLYN--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYAN   76 (245)
Q Consensus         2 ~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~   76 (245)
                      +|+.+...  ...|.|.+++.+|+|.|+|.+.+..+........|.|..   +|.+...+....+..|+.+.|.|.+.|.
T Consensus        59 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~  138 (210)
T 1lk3_L           59 ARFSGSGSGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNF  138 (210)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEE
T ss_pred             ccEEEEecCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeE
Confidence            35555532  247999999999999999999987664333345677765   5776654433334579999999999874


Q ss_pred             -CCC-eEEEEECCEEeccC-Cc-EEEEecC-----ceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         77 -PPA-KVEWFRDGTAITLG-GR-IDMHVSS-----EKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        77 -~~~-~~~w~~~~~~~~~~-~~-~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                       |.+ .+.|++++..+... .. .......     ..+.|.|..+..+|.|.|+|.+.|....
T Consensus       139 ~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (210)
T 1lk3_L          139 YPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS  201 (210)
T ss_dssp             BSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             eCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence             444 89999999887654 11 0011111     1247899999999999999999997653

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.75  E-value=3.3e-17  Score=115.25  Aligned_cols=172  Identities=10%  Similarity=0.021  Sum_probs=106.7

Q ss_pred             cceEEecCCCeEEEEEEEeecCC-----CeEEEEE-CCEEeccCCcEEEEecC---ceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPP-----AKVEWFR-DGTAITLGGRIDMHVSS---EKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~-----~~~~w~~-~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      +..+.+.+|+.+.|.|.+.+.|.     +.+.|++ ++.......+..+....   ....|.|.++..+|.|.|.|.+.|
T Consensus         9 ~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   88 (202)
T 3bp6_B            9 KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVIC   88 (202)
T ss_dssp             CSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEe
Confidence            34567889999999999998876     7999999 44444444455443321   357899999999999999999999


Q ss_pred             CCceeEEEEEEEecCC--CCccccCccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeee
Q psy12131        127 NLGSSQQFIQLSGIPN--IPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQ  204 (245)
Q Consensus       127 ~~g~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (245)
                      ..+.....+.|.+...  .|.... .....+..+.|.|.+.+.+.. .+ .|++...  ...........+    .  ..
T Consensus        89 ~~~~~~~~~~l~V~~~~~~p~~~~-~~~~~g~~v~l~C~~~g~P~p-~v-~W~~~~~--~~~~~~~~~~~~----~--~~  157 (202)
T 3bp6_B           89 GAAWDYKYLTVKVKASYMRIDTRI-LEVPGTGEVQLTCQARGYPLA-EV-SWQNVSV--PANTSHIRTPEG----L--YQ  157 (202)
T ss_dssp             TTEEEEEEEEEEEEBCCCCEEEEE-EECTTTCCEEEEEEEEEBSCC-EE-EETTCCS--CCEEEEEECTTS----C--EE
T ss_pred             CCCcceEEEEEEecCCCCcccEEE-EecCCCCeEEEEEEccccCCc-eE-EEEeCCC--CccCceeeCCCC----C--EE
Confidence            9987777777766533  232222 134578899999999664332 22 2333321  111112111111    1  12


Q ss_pred             EEEecCCCCCceEEEEEEEEecCCCCCCCcceEE
Q psy12131        205 SYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVF  238 (245)
Q Consensus       205 ~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~  238 (245)
                      .+.+..+...+.+.|.|.|.|..|....+..+.+
T Consensus       158 ~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v  191 (202)
T 3bp6_B          158 VTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDP  191 (202)
T ss_dssp             EEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC
T ss_pred             EEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEe
Confidence            2333344445555666669999997765555444

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.75  E-value=9.4e-17  Score=110.33  Aligned_cols=155  Identities=14%  Similarity=0.128  Sum_probs=109.8

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCe-EEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAK-VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+..          ....|.|.++..+|.|.|+|.+.|
T Consensus         6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~----------~~~~L~i~~~~~~d~G~Y~C~~~n   75 (175)
T 1fnl_A            6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS----------QASSYFIDAATVNDSGEYRCQTNL   75 (175)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES----------SCSEEEESSCCGGGCEEEEEECSS
T ss_pred             CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC----------CceEEEEeCCCcccCEEEEEEeeC
Confidence            356676777666788999999999999888776 889999987664          234799999999999999999999


Q ss_pred             CCceeEEEEEEEecCCCCccccC-ccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeE
Q psy12131        127 NLGSSQQFIQLSGIPNIPVFQKS-SRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQS  205 (245)
Q Consensus       127 ~~g~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (245)
                      ..+.....+.+.  +.++..... .....++.+.|.|...+++|...+. |+++..   ... ...          ....
T Consensus        76 ~~~s~~~~l~V~--~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~-W~k~g~---~~~-~~~----------~~~~  138 (175)
T 1fnl_A           76 STLSDPVQLEVH--IGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVT-YLQNGK---DRK-YFH----------HNSD  138 (175)
T ss_dssp             SCCCCCEEEEEE--CSSEEEECSCSEEETTCCEEEEEEECTTCCCEEEE-EEETTE---EEE-EEE----------ECCC
T ss_pred             CcccccEEEEEe--CCCceeeCCCceecCCCCEEEEEEcCCCCCceEEE-EEECCe---Ecc-CCC----------CCCE
Confidence            766544444444  333322221 3345789999999997765543333 555432   111 110          1156


Q ss_pred             EEecCCCCCceEEEEEEEEecCCC
Q psy12131        206 YNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       206 ~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      +.|.++...+.+.|+|.|.|..|.
T Consensus       139 L~i~~v~~~d~G~Y~C~a~n~~~~  162 (175)
T 1fnl_A          139 FHIPKATLKDSGSYFCRGLVGSKN  162 (175)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEE
T ss_pred             EEEcccChhhCeEEEEEEEcCCCC
Confidence            889999999999999999998664

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.75  E-value=9.3e-18  Score=118.87  Aligned_cols=135  Identities=14%  Similarity=0.164  Sum_probs=97.6

Q ss_pred             cceEEEe--ecceEEEeccCCCCCEEEEEEEEcCCC-CceeeEEEEEEe----cCCeEEeecceEEecCCCeEEEEEEEe
Q psy12131          2 KEIELLY--NRESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVY   74 (245)
Q Consensus         2 ~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~   74 (245)
                      +|+.+..  +..+|.|.+++.+|+|.|+|.+.+..+ ......+.|.|.    .+|.+...+....+..|+.+.|.|.+.
T Consensus        57 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~  136 (211)
T 3tv3_L           57 DRFSGSKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLIS  136 (211)
T ss_dssp             TTEEEEEETTEEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEE
T ss_pred             CcEEEEccCCEEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEee
Confidence            3555443  234699999999999999999999877 234566778887    577776665444445799999999999


Q ss_pred             ecC--CCeEEEEECCEEeccCCcEE--EEecCc----eeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         75 ANP--PAKVEWFRDGTAITLGGRID--MHVSSE----KHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        75 ~~~--~~~~~w~~~~~~~~~~~~~~--~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      +.+  .+.+.|++++..+.......  ......    .+.|.|..+...|.|.|+|.+.|..+...+.+.
T Consensus       137 g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~  206 (211)
T 3tv3_L          137 DFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA  206 (211)
T ss_dssp             EEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred             eecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence            853  47899999998875421110  111111    246888888888999999999999877666553

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.75  E-value=3.3e-17  Score=120.26  Aligned_cols=132  Identities=22%  Similarity=0.282  Sum_probs=93.4

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEE---eecCCCeEEEEEC
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV---YANPPAKVEWFRD   86 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~---~~~~~~~~~w~~~   86 (245)
                      .+|.|.+++.+|+|.|+|.+.+..+.. ....+.|.|.  |.   .+....+..|+.+.|.|.+   .+.|.+.+.|+++
T Consensus        84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~~---~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~  158 (268)
T 3mj6_A           84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--PE---EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFS  158 (268)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--CC---CCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEE
T ss_pred             EEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--cc---CCCccccccCCcEEEEEEecCCCCCCccceEEEec
Confidence            669999999999999999999875543 4455666664  21   3345678899999999999   5668889999983


Q ss_pred             -CEEecc-----------------C----CcEEEEe--cCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCC
Q psy12131         87 -GTAITL-----------------G----GRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPN  142 (245)
Q Consensus        87 -~~~~~~-----------------~----~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~  142 (245)
                       +.....                 .    .+..+..  ......|.|.++..+|.|.|+|.+.|..|.....+.|.+...
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~  238 (268)
T 3mj6_A          159 SGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD  238 (268)
T ss_dssp             CTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcC
Confidence             321100                 0    0111100  123568999999999999999999999999888888888655


Q ss_pred             CCccc
Q psy12131        143 IPVFQ  147 (245)
Q Consensus       143 ~p~~~  147 (245)
                      +|.+.
T Consensus       239 ~p~~~  243 (268)
T 3mj6_A          239 EFQRT  243 (268)
T ss_dssp             -----
T ss_pred             CCeee
Confidence            55443

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.74  E-value=5.8e-17  Score=118.24  Aligned_cols=127  Identities=17%  Similarity=0.290  Sum_probs=95.2

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcC-----------CCCceeeEEEEEEec---------------CCe
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNN-----------IGESTSKNFIVNVIY---------------PPE   51 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~-----------~~~~~~~~~~l~v~~---------------~p~   51 (245)
                      +|+++..+    ..+|.|.+++.+|+|.|.|.+.+.           ..........|.|..               +|.
T Consensus        72 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~  151 (256)
T 3juy_B           72 DRVTFTADTSANTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIV  151 (256)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCC
T ss_pred             ceEEEEEecCCCEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeE
Confidence            46777643    245999999999999999999986           111134456678876               345


Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCC-CeEEEEEC--CEEec------------cCCcEEEEecCceeEEEEccCCCCC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPP-AKVEWFRD--GTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTD  116 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d  116 (245)
                      +...+....+.+|+.+.|.|.+.+.+. +.+.|++.  +....            ...++.+...+....|.|.++..+|
T Consensus       152 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  231 (256)
T 3juy_B          152 LTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPED  231 (256)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhH
Confidence            666677888899999999999998776 89999982  22111            2345555555566789999999999


Q ss_pred             CeEEEEEEEeCC
Q psy12131        117 FGNYMCQASNNL  128 (245)
Q Consensus       117 ~g~y~C~~~n~~  128 (245)
                      .|.|.|.+.|..
T Consensus       232 sG~Y~C~~~~~~  243 (256)
T 3juy_B          232 FALYYCQVYGAS  243 (256)
T ss_dssp             CSEEEEEECCSS
T ss_pred             CEEEEEEEeeCC
Confidence            999999999854

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.74  E-value=1.3e-17  Score=118.99  Aligned_cols=131  Identities=21%  Similarity=0.237  Sum_probs=93.7

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecC---CeEEeecceEEecCCCeEEEEEEE-eecCCCeEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP---PEVSVEKQWIHTAPDMRAEIICNV-YANPPAKVEWFR   85 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~w~~   85 (245)
                      ..+|.|.+++.+|+|.|+|.+.+.. . .+..+.|.|..+   |.+...+ ...+..|+.+.|.|.+ .+.|.+.+.|++
T Consensus        71 ~~sL~I~~v~~~D~G~Y~C~~~~~~-~-~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~  147 (222)
T 4i0k_A           71 NASLRLQRVRVTDEGSYTCFVSIQD-F-DSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKD  147 (222)
T ss_dssp             BCCEEECSCCGGGCSCEEEEEEECC-C-CCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEEC
T ss_pred             eEEEEECCcccccCEEEEEEEEeCC-C-ceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEc
Confidence            5669999999999999999999863 2 355666777654   5555444 3356789999999999 888999999998


Q ss_pred             -CCEEeccCCcEEEEe--cCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCC
Q psy12131         86 -DGTAITLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNI  143 (245)
Q Consensus        86 -~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~  143 (245)
                       ++..+..........  .+.-..+.|.++..+|.|.|+|.+.|..|.....+.+.+...|
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  208 (222)
T 4i0k_A          148 GQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQP  208 (222)
T ss_dssp             TTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC--
T ss_pred             CCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCc
Confidence             455443322222221  2222457888999999999999999999998888888876444

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.74  E-value=1.6e-17  Score=118.18  Aligned_cols=133  Identities=16%  Similarity=0.256  Sum_probs=91.0

Q ss_pred             ceEEEe--ecceEEEeccCCCCCEEEEEEEEcCCC---C-ceeeEEEEEEe----cCCeEEeecceEEecCCCeEEEEEE
Q psy12131          3 EIELLY--NRESLDLDRVTLKLAGLYQCIASNNIG---E-STSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICN   72 (245)
Q Consensus         3 ~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~-~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~   72 (245)
                      |+.+..  +..+|.|.+++.+|+|.|+|.+.+..|   . .....+.|.|.    .+|.+...+.......|+.+.|.|.
T Consensus        65 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~  144 (218)
T 3s96_B           65 RFSGSSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCL  144 (218)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEE
T ss_pred             ceEEecCCceEEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEE
Confidence            555543  335699999999999999999998765   1 13445678887    4566665444444456789999999


Q ss_pred             Eee-cCCC-eEEEEECCEEeccCCcEE--EEecCc---eeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131         73 VYA-NPPA-KVEWFRDGTAITLGGRID--MHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI  135 (245)
Q Consensus        73 ~~~-~~~~-~~~w~~~~~~~~~~~~~~--~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  135 (245)
                      +.+ .|.+ .+.|++++..+.......  ....+.   .+.|.|......|.|.|+|.+.|..+.....+
T Consensus       145 ~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          145 ISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             EEEEBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred             ECcccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence            988 5666 899999998876522110  000111   23477888877889999999999987665544

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.74  E-value=5.5e-18  Score=117.67  Aligned_cols=112  Identities=17%  Similarity=0.284  Sum_probs=83.5

Q ss_pred             ecceEEEec-cCCCCCEEEEEEEEcCCCCceeeEEEEEEec--CCeE----------------E----eecce---EEec
Q psy12131          9 NRESLDLDR-VTLKLAGLYQCIASNNIGESTSKNFIVNVIY--PPEV----------------S----VEKQW---IHTA   62 (245)
Q Consensus         9 ~~~~L~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~----------------~----~~~~~---~~~~   62 (245)
                      .+.+|.|.+ ++.+|+|.|+|.|.|..|. .+..+.+.|..  +|..                .    .....   ..+.
T Consensus        42 ~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (186)
T 1jbj_A           42 HDKHLVLQDFSEVEDSGYYVCYTPASNKN-TYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSR  120 (186)
T ss_dssp             CCSEEEEESCCTTTSCEEEEEECSSCCCC-CCEEECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCS
T ss_pred             CCCEEEECCCCccccCEEEEEEEEeCCCc-EEEEEEEEEecccccccccccccccccCCccccccccccccccccceecC
Confidence            355799999 9999999999999998876 45555554432  2210                0    00001   1234


Q ss_pred             CCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131         63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  131 (245)
                      .|+.+.|.|.+   |.|.+.|++++..+.....       ....|.|.++..+|.|.|+|.|.|..|..
T Consensus       121 ~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          121 GDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-------TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             SSCEEEEECSS---SCSCEEEEETTEECCCSSC-------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             CCCeEEEEeeC---CCCeEEEEECCEECcccCC-------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            89999999998   7899999999998764322       34579999999999999999999998865

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.74  E-value=3.4e-17  Score=119.53  Aligned_cols=127  Identities=15%  Similarity=0.262  Sum_probs=92.8

Q ss_pred             cceEEEeec----ceEEEeccCCCCCEEEEEEEEcCCCC---ceeeEEEEEEecC--------------CeEEeecceEE
Q psy12131          2 KEIELLYNR----ESLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIYP--------------PEVSVEKQWIH   60 (245)
Q Consensus         2 ~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~~--------------p~~~~~~~~~~   60 (245)
                      +|+.+..+.    .+|.|.+++.+|+|.|+|.+.+..+.   .....+.|.|..+              |.+...+....
T Consensus        73 ~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~  152 (257)
T 3gkz_A           73 SRISITRDTSKNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMS  152 (257)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEE
T ss_pred             ccEEEEEecCCceEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEE
Confidence            466666433    36999999999999999999986221   1234566777754              55666667788


Q ss_pred             ecCCCeEEEEEEEeecCCC-eEEEEEC--CEEec------------cCCcEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         61 TAPDMRAEIICNVYANPPA-KVEWFRD--GTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~~~~~-~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      +.+|+.+.|.|.+.+.+.+ .+.|++.  +....            ...++..........|.|.++..+|.|.|.|.+.
T Consensus       153 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~  232 (257)
T 3gkz_A          153 ASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQW  232 (257)
T ss_dssp             ECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             EeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEc
Confidence            8999999999999988877 8999983  22111            0234555444556789999999999999999998


Q ss_pred             eCC
Q psy12131        126 NNL  128 (245)
Q Consensus       126 n~~  128 (245)
                      +..
T Consensus       233 ~~~  235 (257)
T 3gkz_A          233 SSF  235 (257)
T ss_dssp             SSS
T ss_pred             cCC
Confidence            754

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.74  E-value=6.2e-17  Score=114.63  Aligned_cols=173  Identities=15%  Similarity=0.181  Sum_probs=114.6

Q ss_pred             cceEEecCCCeEEEEEEEeecC----CCeEEEEE----------------CCEEecc-----CCcEEEEe---cCceeEE
Q psy12131         56 KQWIHTAPDMRAEIICNVYANP----PAKVEWFR----------------DGTAITL-----GGRIDMHV---SSEKHSL  107 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~----~~~~~w~~----------------~~~~~~~-----~~~~~~~~---~~~~~~l  107 (245)
                      +..+.+.+|+.+.|.|.+.+.+    .+.+.|++                ++.....     ..+..+..   ......|
T Consensus         7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L   86 (214)
T 3jz7_A            7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI   86 (214)
T ss_dssp             EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred             CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence            3466788999999999998876    46999987                3333321     22333321   1235679


Q ss_pred             EEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCCC--CccccCccccCCCeeEEEEEe-CCCCCceEEEEEEEeecCCC
Q psy12131        108 LVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNI--PVFQKSSRRLGPDGYRLVWQV-DTYSGIIQYLLKFREREELT  184 (245)
Q Consensus       108 ~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~--p~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~  184 (245)
                      .|.++..+|.|.|.|.+.|..|.....+.|.+...|  +..........+..+.|.|.+ .+.++ ..+ .|++... ..
T Consensus        87 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~-~~v-~W~~~~~-~~  163 (214)
T 3jz7_A           87 NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLP-LQF-EWQKLSD-SQ  163 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSS-CEE-EEEECST-TC
T ss_pred             EEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCC-CEE-EEEECCC-CC
Confidence            999999999999999999998877777776665333  222222345678899999999 55543 233 3555322 11


Q ss_pred             CeE-EEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEe
Q psy12131        185 PWR-NIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       185 ~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~  239 (245)
                      ... .......        ...+.|.++...+.+.|+|.|.|..|....+..+.+.
T Consensus       164 ~~~~~~~~~~~--------~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          164 TMPTPWLAEMT--------SPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             CCCGGGGGGTT--------SSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             ccCccceeccC--------CCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence            100 0000011        1478899999999999999999999987665555554

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.74  E-value=4.5e-17  Score=116.27  Aligned_cols=133  Identities=14%  Similarity=0.103  Sum_probs=91.9

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCCC----ceeeEEEEEEec----CCeEEeecceEEecCCCeEEE
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIGE----STSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEI   69 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l   69 (245)
                      +|+++..+    ..+|.|.+++.+|+|.|+|.+.+..+.    .......|.|..    +|.+...+....+..|+.+.|
T Consensus        68 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L  147 (222)
T 1q9r_B           68 GRFTISRDNSQSILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTL  147 (222)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEE
T ss_pred             CceEEEEECCCCeEEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEE
Confidence            46777653    347999999999999999999986541    122345677764    455554433333567999999


Q ss_pred             EEEEeec-CCC-eEEEEECCEEeccCCcEEEEecC---ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131         70 ICNVYAN-PPA-KVEWFRDGTAITLGGRIDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI  135 (245)
Q Consensus        70 ~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  135 (245)
                      .|.+.|. |.| .+.|++++..+...........+   ..+.|.|..+...| |.|+|.|.|..|......
T Consensus       148 ~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~  217 (222)
T 1q9r_B          148 GCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  217 (222)
T ss_dssp             EEEEEEEBSSCCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             EEEEccEECCCCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEE
Confidence            9999985 888 99999988654321111111111   12468898888889 999999999988655443

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.74  E-value=5.2e-18  Score=127.06  Aligned_cols=127  Identities=23%  Similarity=0.295  Sum_probs=100.4

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEecCCeEEeec-ceEEecCCCeEEEEEEEeecCCC-eEEEEECC
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEK-QWIHTAPDMRAEIICNVYANPPA-KVEWFRDG   87 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~   87 (245)
                      +.|.|.++..+|.|.|+|.|.|..+.. ....+.|.|..+|.+...+ ....+..|+.+.|.|.+.|.|.| .+.|++++
T Consensus       172 s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~  251 (308)
T 4fom_A          172 SQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLD  251 (308)
T ss_dssp             EEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSS
T ss_pred             ccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECC
Confidence            459999999999999999999987653 4566777788888876543 33456678999999999999988 69999988


Q ss_pred             EEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEecCC
Q psy12131         88 TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPN  142 (245)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~  142 (245)
                      ..+.....     ......+.|..+..+|.|.|+|.|.|..|.....+.|.+...
T Consensus       252 ~~~~~~~~-----~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~  301 (308)
T 4fom_A          252 GQWPDGLL-----ASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDP  301 (308)
T ss_dssp             SCCCSSCB-----CSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECC
T ss_pred             eECCCcEE-----EcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcC
Confidence            76654321     113345678899999999999999999999888888776643

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.73  E-value=9.6e-17  Score=116.50  Aligned_cols=127  Identities=14%  Similarity=0.169  Sum_probs=86.1

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEee-cCCC-eEEEEECCE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA-NPPA-KVEWFRDGT   88 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~w~~~~~   88 (245)
                      .+|.|.+++.+|+|.|+|.+.+..+. ....+.|.|..+|.+...+.. ....|..+.|.|.+.+ .|.| .+.|++++.
T Consensus        82 ~sL~I~~v~~~D~G~Y~C~~~~~~~~-~~~~~~L~V~~~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~  159 (248)
T 3pv7_A           82 ASLRLPGIQLEEAGEYRCEVVVTPLK-AQGTVQLEVVASPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEKQTQ  159 (248)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECS
T ss_pred             EEEEeCCCCHHHCeEEEEEEEeCCcc-ceeEEEEEEecCCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEECCc
Confidence            34999999999999999999998765 677889999999998776653 3456778889999998 7888 999999885


Q ss_pred             EeccC------Cc-EEEEec--C---ceeEEEEccCCCCCCeEEEEEEEeCCceeEE--EEEEEe
Q psy12131         89 AITLG------GR-IDMHVS--S---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ--FIQLSG  139 (245)
Q Consensus        89 ~~~~~------~~-~~~~~~--~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~--~~~~~~  139 (245)
                      .+...      .. ......  +   ..+.|.+......|.|.|+|.+.|..+....  .+.|.+
T Consensus       160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          160 KFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             SSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             cCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            33211      00 001111  1   1346788888888999999999998876433  444444

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.73  E-value=3.3e-16  Score=111.38  Aligned_cols=180  Identities=12%  Similarity=0.060  Sum_probs=113.5

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCcee--EEEEccCCCCCCeEEEEEEE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH--SLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~y~C~~~  125 (245)
                      .+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|++++..+..... .........  .|.|.++..+|.|.|.|.+.
T Consensus         8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   84 (218)
T 1uct_A            8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIG-RRLKFWNETDPEFVIDHMDANKAGRYQCQYR   84 (218)
T ss_dssp             CCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECS-EECC----CCCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccccc-ccCCCCcceeeEEEEcccccccCEEEEEEEE
Confidence            4677766665 46789999999999986 6789999998765432211 111111234  79999999999999999999


Q ss_pred             eCCceeE--EEEEEEec--CCCCcccc--CccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCc
Q psy12131        126 NNLGSSQ--QFIQLSGI--PNIPVFQK--SSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAG  199 (245)
Q Consensus       126 n~~g~~~--~~~~~~~~--~~~p~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (245)
                      |..|...  ..+.+.+.  +.+|.+..  ...+..|+.++|.|...+.++ ..| .|+++.. ...-... ....     
T Consensus        85 n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~-~~~-~W~k~g~-~~~~~~~-~~~~-----  155 (218)
T 1uct_A           85 IGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPF-DRF-SLAKEGE-LSLPQHQ-SGEH-----  155 (218)
T ss_dssp             ETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSSCC-SEE-EEEETTC-SSCCSEE-ECSS-----
T ss_pred             cCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCCCC-CEE-EEEECCC-ccccccc-CCCc-----
Confidence            9765322  23444433  33444322  234568899999996544333 234 3555543 1110111 1111     


Q ss_pred             ceeeeEEEecCCCCCceEEEEEEEEecC---CCCCCCcceEEecCC
Q psy12131        200 PIYTQSYNITGLQLFTQYEASVLAKNRF---GWSRPSKAYVFATEG  242 (245)
Q Consensus       200 ~~~~~~~~i~~l~~~~~y~~~v~a~N~~---G~~~~s~~~~~~t~~  242 (245)
                         ...|.|.++...+.+.|+|.|.|..   ..+..|..+.+...+
T Consensus       156 ---~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  198 (218)
T 1uct_A          156 ---PANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTD  198 (218)
T ss_dssp             ---SEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred             ---cCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence               1679999999999999999999874   346677776665543

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.73  E-value=9.3e-17  Score=120.59  Aligned_cols=175  Identities=15%  Similarity=0.057  Sum_probs=115.8

Q ss_pred             ceEEecCCCeEEEEEEEeec-----CCCeEEEEECCEEeccCCcEEEEecCc-eeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         57 QWIHTAPDMRAEIICNVYAN-----PPAKVEWFRDGTAITLGGRIDMHVSSE-KHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~-----~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      ....+..|.+++|.|.+.+.     +.+.+.|++++..+... +......+. .+.|+|.++...|.|.|.|.+.+..+.
T Consensus         8 ~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~   86 (313)
T 2d9q_B            8 SAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGG-RQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQ   86 (313)
T ss_dssp             SCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTC-EECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEE
T ss_pred             CCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCcc-ceEEEecCeEEEEEEEeccCCCccceEEeeecCCCce
Confidence            34567899999999999986     56899999999877532 222222222 268999999999999999999776555


Q ss_pred             eEEEEEEE--ecCCCCccccCccccCCCeeEEEEEeCCC-CCceEEEEEEEeecC-----CCCeEEEeeCCCCCCCccee
Q psy12131        131 SQQFIQLS--GIPNIPVFQKSSRRLGPDGYRLVWQVDTY-SGIIQYLLKFREREE-----LTPWRNIVIPSDGSLAGPIY  202 (245)
Q Consensus       131 ~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  202 (245)
                      ....+.|.  ..|.+|.............+.|.|.+..+ .....|.++|+....     ...|..+......      .
T Consensus        87 ~~~~~~l~v~~~P~~P~~l~c~~~~~~~~~~~~W~~~~~~~~~~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~------~  160 (313)
T 2d9q_B           87 ILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQ------S  160 (313)
T ss_dssp             EEEEEEEEECCCCCCCEEEEEEEETTTTEEEEEEECCSCCSSCCEEEEEEEECCTTSCSCCCCEEEECCCTTC------S
T ss_pred             eEEEEEEccCCCCCCCccceeeECCCCccEEEEecCCCCCCCceeEEEEEEecCCCcccCCcccccCCCCCCC------c
Confidence            44444444  34556665544332245789999998433 234579999987531     2235444321111      1


Q ss_pred             eeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEe
Q psy12131        203 TQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       203 ~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~  239 (245)
                      ...+...+|.+...|.|+|.|.|..|.+.. ..+.+.
T Consensus       161 ~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s-~~~~~~  196 (313)
T 2d9q_B          161 HCSIPRKHLLLYQNMGIWVQAENALGTSMS-PQLCLD  196 (313)
T ss_dssp             EEEEEGGGCCSSSCEEEEEEEEETTEEEEC-CCEEEC
T ss_pred             EEEECccccccceeEEEEEEEECCCCCccC-ccEEEe
Confidence            133344569999999999999999998643 334443

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.73  E-value=2.8e-16  Score=111.85  Aligned_cols=157  Identities=15%  Similarity=0.167  Sum_probs=110.9

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      ..+.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....         ...|.|.++...|.|.|+|.+.|.
T Consensus        17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~~~n~   87 (218)
T 3k0w_A           17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN---------TSELIFNAVHVKDAGFYVCRVNNN   87 (218)
T ss_dssp             --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC---------SSEEEETTCCGGGCEEEEEEEECT
T ss_pred             CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC---------CCEEEEccCChhhCeEeEEEEEcC
Confidence            35667777778889999999999999999999999999998876542         347999999999999999999998


Q ss_pred             Ccee-EEEEEEEecCCC--------------CccccC---ccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEE
Q psy12131        128 LGSS-QQFIQLSGIPNI--------------PVFQKS---SRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNI  189 (245)
Q Consensus       128 ~g~~-~~~~~~~~~~~~--------------p~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (245)
                      .|.. ...+.+.+...+              |.+...   .....+..+.|.|.+.+.++. .+ .|+++..        
T Consensus        88 ~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~-~v-~W~~~~~--------  157 (218)
T 3k0w_A           88 FTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIP-HY-QWFKNEL--------  157 (218)
T ss_dssp             TCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCC-EE-EEEETTE--------
T ss_pred             CCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCC-eE-EEEECCE--------
Confidence            7743 223333332221              222211   234678899999999666443 22 3444422        


Q ss_pred             eeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        190 VIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      .+....       ...+.|.++...+.+.|+|.|.|..|..
T Consensus       158 ~~~~~~-------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  191 (218)
T 3k0w_A          158 PLTHET-------KKLYMVPYVDLEHQGTYWCHVYNDRDSQ  191 (218)
T ss_dssp             ECTTCC-------SSEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred             ECCCCC-------CCEEEEeecChhcCEEEEEEEEcCCCCc
Confidence            011111       1468899999999999999999998863

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.73  E-value=4.7e-17  Score=115.66  Aligned_cols=129  Identities=14%  Similarity=0.116  Sum_probs=89.0

Q ss_pred             ceEEEee--cceEEEeccCCCCCEEEEEEEEcCCC-CceeeEEEEEEe---cCCeEEeecceEEecCCCeEEEEEEEee-
Q psy12131          3 EIELLYN--RESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVI---YPPEVSVEKQWIHTAPDMRAEIICNVYA-   75 (245)
Q Consensus         3 ~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~-   75 (245)
                      |+.+...  ..+|.|.+++.+|+|.|+|.+.+..+ ........|.|.   .+|.+...+.......|+.+.|.|.+.| 
T Consensus        62 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~  141 (216)
T 2xzc_L           62 RFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNF  141 (216)
T ss_dssp             TEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE
T ss_pred             ceEEeccCCEEEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeE
Confidence            5555532  34699999999999999999999876 112334566776   4566655433222335889999999998 


Q ss_pred             cCCC-eEEEEECCEEeccCCcEE--EEecC-----ceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131         76 NPPA-KVEWFRDGTAITLGGRID--MHVSS-----EKHSLLVRHIKDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus        76 ~~~~-~~~w~~~~~~~~~~~~~~--~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  131 (245)
                      .|.+ .+.|++++..+.......  .....     ..+.|.|.....+|.|.|+|.+.|.....
T Consensus       142 ~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  205 (216)
T 2xzc_L          142 YPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  205 (216)
T ss_dssp             BSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             cCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence            4554 899999998876541111  11111     12378899998899999999999986443

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.73  E-value=3.5e-16  Score=106.88  Aligned_cols=154  Identities=13%  Similarity=0.187  Sum_probs=105.8

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecC-CCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      +|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++++..+....          ..+.+.++...|.|.|.|.+.|.
T Consensus         4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~----------~~~~~~~~~~~d~G~Y~C~~~~~   73 (170)
T 3ry4_A            4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT----------QPSYRFKANNNDSGEYTCQTGQT   73 (170)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCC----------SSEEEEECCGGGCEEEEEEETTS
T ss_pred             CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCc----------cceEEEecccccCeEEEEEEeCC
Confidence            34555566656678999999999999886 56999999999877542          23667789999999999999986


Q ss_pred             CceeEEEEEEEecCCCCcccc-CccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEE
Q psy12131        128 LGSSQQFIQLSGIPNIPVFQK-SSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSY  206 (245)
Q Consensus       128 ~g~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (245)
                      .......+.+..  .++.... ......++.+.|.|....+.|...+. |+++..    -  +......        ..+
T Consensus        74 ~~s~~~~l~v~~--~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~-W~~~g~----~--~~~~~~~--------~~L  136 (170)
T 3ry4_A           74 SLSDPVHLTVLF--EWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVT-FFQNGK----S--QKFSHLD--------PTF  136 (170)
T ss_dssp             BCCCCEEEEEEC--CSEEEECSCSEECTTCCEEEEEEEGGGCCEEEEE-EEETTE----E--EEEESSC--------CEE
T ss_pred             CceEeEEEEEEC--CceEecCCCceeecCCeEEEEEECCCCCCCceEE-EEECCe----E--ccccCCC--------CeE
Confidence            655544444433  2222221 12345788999999995554443343 444322    1  1111111        568


Q ss_pred             EecCCCCCceEEEEEEEEecCCC
Q psy12131        207 NITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       207 ~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      .|.++...+.+.|+|.|.|..|.
T Consensus       137 ~i~~v~~~d~G~Y~C~a~n~~g~  159 (170)
T 3ry4_A          137 SIPQANHSHSGDYHCTGNIGYTL  159 (170)
T ss_dssp             EESSCCGGGCEEEEEEEEETTEE
T ss_pred             EEEeccccCCEEEEEEEEeCcCc
Confidence            89999999999999999999985

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.73  E-value=8.1e-17  Score=112.90  Aligned_cols=181  Identities=13%  Similarity=0.109  Sum_probs=114.0

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .+|.+...+.. .+.+|+.+.|.|.+.+.+. .+.|++++..+...... .........|.|.++..+|.|.|+|.+.|.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   80 (198)
T 1ugn_A            4 PKPTLWAEPGS-VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRI-PQELVKKGQFPIPSITWEHTGRYRCYYGSD   80 (198)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTS-CHHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCeEeccCCC-cccCCCcEEEEEEecCCCc-EEEEEECCccccccccc-cccCCcccEEEECCCCHHHCeEEEEEEECC
Confidence            46777766653 6789999999999987765 79999998766321100 000113457999999999999999999998


Q ss_pred             C-ce--eEEEEEEEec--CCCCccccC--ccccCCCeeEEEEEeCCCCCceEEEEEEEeecCC-CCeEEEeeCCCCCCCc
Q psy12131        128 L-GS--SQQFIQLSGI--PNIPVFQKS--SRRLGPDGYRLVWQVDTYSGIIQYLLKFREREEL-TPWRNIVIPSDGSLAG  199 (245)
Q Consensus       128 ~-g~--~~~~~~~~~~--~~~p~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  199 (245)
                      . |.  ....+.+.+.  +.+|.+...  .....++.+.|.|.+.+..+  .+ .|+++.... ..-........     
T Consensus        81 ~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~~~--~v-~W~k~g~~~~~~~~~~~~~~~-----  152 (198)
T 1ugn_A           81 TAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAFD--GF-ILCKEGEDEHPQCLNSQPHAR-----  152 (198)
T ss_dssp             TTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSCCS--EE-EEEEC------CEEEC----------
T ss_pred             CCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEecCCCCc--EE-EEEECCCccCCccccccccCC-----
Confidence            7 52  2333444443  333433222  34567899999999977643  23 355554310 00001000000     


Q ss_pred             ceeeeEEEecCCCCCceEEEEEEEEecCC---CCCCCcceEEe
Q psy12131        200 PIYTQSYNITGLQLFTQYEASVLAKNRFG---WSRPSKAYVFA  239 (245)
Q Consensus       200 ~~~~~~~~i~~l~~~~~y~~~v~a~N~~G---~~~~s~~~~~~  239 (245)
                      ......|.|.++...+.+.|+|.|.|..+   .+..|+.+.+.
T Consensus       153 ~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~  195 (198)
T 1ugn_A          153 GSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELL  195 (198)
T ss_dssp             -CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEE
T ss_pred             CcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEE
Confidence            01126789999999999999999999977   35566666654

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.73  E-value=5.9e-17  Score=115.42  Aligned_cols=134  Identities=13%  Similarity=0.107  Sum_probs=89.9

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCCC---ceeeEEEEEEecC----CeEEeecceEEecCCCeEEEE
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIYP----PEVSVEKQWIHTAPDMRAEII   70 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~~----p~~~~~~~~~~~~~g~~~~l~   70 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|+|.+.+..+.   .....+.|.|...    |.+...+....+..|+.+.|.
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~  145 (219)
T 1c1e_H           66 GRFAFFLETSATTAYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLG  145 (219)
T ss_dssp             SSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEE
T ss_pred             CcEEEEEecCCCEEEEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEE
Confidence            46666643    357999999999999999999987632   1223566777653    555544433345689999999


Q ss_pred             EEEee-cCCC-eEEEEECCEEeccCCcEEEEecC---ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         71 CNVYA-NPPA-KVEWFRDGTAITLGGRIDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        71 C~~~~-~~~~-~~~w~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      |.+.+ .|.| .+.|++++..+...........+   ..+.|.|..... |.|.|+|.|.|..+.......
T Consensus       146 C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~~  215 (219)
T 1c1e_H          146 CLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKK  215 (219)
T ss_dssp             EEEEEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEEE
T ss_pred             EEcccccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEEe
Confidence            99998 8888 99999988653211000011111   124678854444 569999999998876554443

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.73  E-value=5e-17  Score=111.13  Aligned_cols=117  Identities=14%  Similarity=0.257  Sum_probs=90.4

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEe-ecCCCeEEEEECCE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVY-ANPPAKVEWFRDGT   88 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~w~~~~~   88 (245)
                      ...+.|.+++.+|+|.|+|.+.+..   .+..+.|.|..+|.+...+ ...+.+|+.+.|.|.+. +.|.+.+.|++++.
T Consensus        50 ~~~~~~~~~~~~d~G~Y~C~~~~~~---~s~~~~l~v~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~  125 (170)
T 3ry4_A           50 TQPSYRFKANNNDSGEYTCQTGQTS---LSDPVHLTVLFEWLVLQTP-HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGK  125 (170)
T ss_dssp             CSSEEEEECCGGGCEEEEEEETTSB---CCCCEEEEEECCSEEEECS-CSEECTTCCEEEEEEEGGGCCEEEEEEEETTE
T ss_pred             ccceEEEecccccCeEEEEEEeCCC---ceEeEEEEEECCceEecCC-CceeecCCeEEEEEECCCCCCCceEEEEECCe
Confidence            3458899999999999999999743   4556888888877655544 34577899999999994 45668999999998


Q ss_pred             EeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCce-eEEEEEEE
Q psy12131         89 AITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS-SQQFIQLS  138 (245)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~-~~~~~~~~  138 (245)
                      .+...        .....|.|.++..+|.|.|+|.+.|..|. ....+.+.
T Consensus       126 ~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~  168 (170)
T 3ry4_A          126 SQKFS--------HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTIT  168 (170)
T ss_dssp             EEEEE--------SSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             Ecccc--------CCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEE
Confidence            75422        13457999999999999999999999886 33344444

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.73  E-value=1.2e-16  Score=118.14  Aligned_cols=126  Identities=18%  Similarity=0.319  Sum_probs=93.4

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCCC---c-eeeEEEEEEecCC---------------eEEeecce
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIGE---S-TSKNFIVNVIYPP---------------EVSVEKQW   58 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~-~~~~~~l~v~~~p---------------~~~~~~~~   58 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|+|.+.+..|.   . ....+.|.|..+|               .+...+..
T Consensus        92 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~  171 (282)
T 1qok_A           92 GKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAI  171 (282)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSE
T ss_pred             CcEEEEEecCCCeEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCE
Confidence            46666642    356999999999999999999998651   1 1234567777543               34455666


Q ss_pred             EEecCCCeEEEEEEEeecCCCeEEEEE--CCEEec------------cCCcEEEEecCceeEEEEccCCCCCCeEEEEEE
Q psy12131         59 IHTAPDMRAEIICNVYANPPAKVEWFR--DGTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA  124 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  124 (245)
                      ..+.+|+.+.|.|.+.+.+ +.+.|++  ++..+.            ...++..........|.|.++..+|.|.|.|.+
T Consensus       172 ~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a  250 (282)
T 1qok_A          172 MSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQ  250 (282)
T ss_dssp             EEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             EEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEE
Confidence            7789999999999999888 8999999  554321            124555544455678999999999999999999


Q ss_pred             EeCC
Q psy12131        125 SNNL  128 (245)
Q Consensus       125 ~n~~  128 (245)
                      .+..
T Consensus       251 ~~~~  254 (282)
T 1qok_A          251 RSSY  254 (282)
T ss_dssp             CSSS
T ss_pred             eeCC
Confidence            9853

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.73  E-value=4.3e-16  Score=107.93  Aligned_cols=167  Identities=13%  Similarity=0.121  Sum_probs=109.7

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .+|.+...+.. .+.+|+.+.|.|.+.+ +.+.+.|++++....          .....|.|.++..+|.|.|+|.+.|.
T Consensus         7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~----------~~~~~L~i~~v~~~D~G~Y~C~a~n~   74 (184)
T 2gi7_A            7 PKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSRY----------QDQAVLFIPAMKRSLAGRYRCSYQNG   74 (184)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCCE----------ESSSEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcccc----------CcccEEEECcCChhhCceEEEEEEcC
Confidence            46777766654 6889999999999987 778999999886511          13457999999999999999999998


Q ss_pred             Ccee--EEEEEEEe--cCCCCcccc--CccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcce
Q psy12131        128 LGSS--QQFIQLSG--IPNIPVFQK--SSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPI  201 (245)
Q Consensus       128 ~g~~--~~~~~~~~--~~~~p~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (245)
                      .|..  ...+.+.+  ...+|.+..  ......++.+.|.|...+.++  .| .|+++.. .....      .   ....
T Consensus        75 ~g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~~~--~~-~w~k~g~-~~~~~------~---~~~~  141 (184)
T 2gi7_A           75 SLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGFD--QF-ALYKEGD-PAPYK------N---PERW  141 (184)
T ss_dssp             TEEBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSCCC--EE-EEEECCC-CTTSC------C---CCEE
T ss_pred             CCccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCCCc--EE-EEEECCC-cCcce------e---cCCC
Confidence            7632  22334443  333443322  123467899999999865543  33 4566543 11100      0   0011


Q ss_pred             eeeEEEecCCCCCceEEEEEEEEecCCC---CCCCcceEEe
Q psy12131        202 YTQSYNITGLQLFTQYEASVLAKNRFGW---SRPSKAYVFA  239 (245)
Q Consensus       202 ~~~~~~i~~l~~~~~y~~~v~a~N~~G~---~~~s~~~~~~  239 (245)
                      ....|.|.++...+.+.|+|.|.|..+.   +..|..+.+.
T Consensus       142 ~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~  182 (184)
T 2gi7_A          142 YRASFPIITVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELV  182 (184)
T ss_dssp             EEESSSEEEETTCCSEEEEEEEECTTSTTBCCCCCCCEEEE
T ss_pred             ceEEEEEccCCccCCeEEEEEEEeCCCCcccCCCCCcEEEE
Confidence            1244667777778888888889998753   4566666554

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.72  E-value=1.4e-16  Score=112.69  Aligned_cols=181  Identities=14%  Similarity=0.120  Sum_probs=116.3

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCc-----EEEEecCce--eEEEEccCCCCCCeEE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGR-----IDMHVSSEK--HSLLVRHIKDTDFGNY  120 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~-----~~~~~~~~~--~~l~i~~~~~~d~g~y  120 (245)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....     ......+..  ..+.|.++...|.|.|
T Consensus         8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   87 (212)
T 2v9r_A            8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY   87 (212)
T ss_dssp             EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEE
T ss_pred             CCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEE
Confidence            467777777788899999999999999999999999999987764321     111111111  1234456788999999


Q ss_pred             EEEEEeCCcee-EEEEEEEecCCCCccc---cCccccCCCeeEEEEEe-CCCCCceEEEEEEEeec---CCCCeEEEeeC
Q psy12131        121 MCQASNNLGSS-QQFIQLSGIPNIPVFQ---KSSRRLGPDGYRLVWQV-DTYSGIIQYLLKFRERE---ELTPWRNIVIP  192 (245)
Q Consensus       121 ~C~~~n~~g~~-~~~~~~~~~~~~p~~~---~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  192 (245)
                      +|.+.|..|.. ...+.+.+...++.+.   .......++.+.|.|.+ .+.++. .+ .|+++..   ........   
T Consensus        88 ~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~v-~W~~~~~~l~~~~~~~~~---  162 (212)
T 2v9r_A           88 VCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEP-TI-SWKKDGSPLDDKDERITI---  162 (212)
T ss_dssp             EEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCC-EE-EEEETTEEECTTSTTEEE---
T ss_pred             EEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCC-EE-EEEECCccCCCCcceEEc---
Confidence            99999988765 2344444332222221   12235678899999998 554433 33 3444432   11111111   


Q ss_pred             CCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCC-cceEEecCC
Q psy12131        193 SDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS-KAYVFATEG  242 (245)
Q Consensus       193 ~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s-~~~~~~t~~  242 (245)
                               ....+.|.++...+.+.|+|.|.|..|..... ..+.+...|
T Consensus       163 ---------~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P  204 (212)
T 2v9r_A          163 ---------RGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERP  204 (212)
T ss_dssp             ---------ETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             ---------cCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCc
Confidence                     11468899999999999999999999976443 456665444

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.72  E-value=5.3e-18  Score=128.72  Aligned_cols=138  Identities=18%  Similarity=0.284  Sum_probs=104.2

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCC---ceeeEEEEEEec-----CCeEEeecceEEecCCCeEEEEEEE-
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIY-----PPEVSVEKQWIHTAPDMRAEIICNV-   73 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~-----~p~~~~~~~~~~~~~g~~~~l~C~~-   73 (245)
                      ++.+..+...|.|.+++.+|+|.|+|.|.|..|.   ..+..+.|.|..     +|.+...+....+..|+.+.|.|.+ 
T Consensus       172 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~  251 (339)
T 3o4o_C          172 KFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVF  251 (339)
T ss_dssp             SEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEE
T ss_pred             eeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEE
Confidence            4555555567999999999999999999998764   246678888874     5566666666678899999999999 


Q ss_pred             --eecC-CCeEEEEECCEEecc---------CCcEEEEecCc---eeEEEEccCCCCCC-eEEEEEEEeCCceeEEEEEE
Q psy12131         74 --YANP-PAKVEWFRDGTAITL---------GGRIDMHVSSE---KHSLLVRHIKDTDF-GNYMCQASNNLGSSQQFIQL  137 (245)
Q Consensus        74 --~~~~-~~~~~w~~~~~~~~~---------~~~~~~~~~~~---~~~l~i~~~~~~d~-g~y~C~~~n~~g~~~~~~~~  137 (245)
                        .|.| .+.+.|++++..+..         ..++.+...+.   .+.|.|.++..+|. |.|.|.|.|..|.....+.+
T Consensus       252 ~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~  331 (339)
T 3o4o_C          252 LGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV  331 (339)
T ss_dssp             ESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCC
T ss_pred             CCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEh
Confidence              8888 789999998876532         22222222221   22799999999997 99999999999988877666


Q ss_pred             Eec
Q psy12131        138 SGI  140 (245)
Q Consensus       138 ~~~  140 (245)
                      .+.
T Consensus       332 ~~~  334 (339)
T 3o4o_C          332 KEH  334 (339)
T ss_dssp             CC-
T ss_pred             hHh
Confidence            543

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.72  E-value=3.4e-17  Score=111.98  Aligned_cols=114  Identities=13%  Similarity=0.153  Sum_probs=84.0

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCC---eEEeecceEEecCCCeEEEEEEEeecCC
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP---EVSVEKQWIHTAPDMRAEIICNVYANPP   78 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~~~~l~C~~~~~~~   78 (245)
                      +|+.+...+.+|.|.+++.+|+|.|+|.+.+..|   .+.+.|.|..++   .+....       .. ..|.|.+.+.|.
T Consensus        51 ~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~~---~~~~~L~V~~~~~~p~i~~~~-------~~-~~L~C~~~~~p~  119 (171)
T 1ccz_A           51 NRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD---TMKFFLYVLEMVSKPMIYWEC-------SN-ATLTCEVLEGTD  119 (171)
T ss_dssp             TSEEECTTTCCEEECSCCGGGCEEEEEECTTCCS---CEEEEEEEECCCCCCEEEEET-------TT-TEEEEECSSCSS
T ss_pred             CcEEEeCCCCeEEECCCChhhCceEEEEEeCCCC---cEEEEEEEECcCCCCEEEEec-------CC-cEEEEEeCCCCC
Confidence            4666655566799999999999999999998766   677888887653   222211       11 379999998899


Q ss_pred             CeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12131         79 AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL  137 (245)
Q Consensus        79 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~  137 (245)
                      |.+.|++++..+......         .+.+.  ...|.|.|+|.|.|..|.....+.+
T Consensus       120 p~i~W~~~~~~l~~~~~~---------~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          120 VELKLYQGKEHLRSLRQK---------TMSYQ--WTNLRAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             CEEEEEETTEEEEEESSS---------EEEEE--CSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             cEEEEEECCEECcCCcce---------EEEEe--ccCCCceEEEEEEcccCcccceeEE
Confidence            999999999877643221         23332  3668899999999999887665544

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.72  E-value=2.6e-16  Score=116.06  Aligned_cols=126  Identities=14%  Similarity=0.162  Sum_probs=88.1

Q ss_pred             cceEEEeec--ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCC-------------eE-EeecceEEecCCC
Q psy12131          2 KEIELLYNR--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP-------------EV-SVEKQWIHTAPDM   65 (245)
Q Consensus         2 ~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p-------------~~-~~~~~~~~~~~g~   65 (245)
                      +|+.+..++  .+|.|.+++.+|+|.|+|.+.+..+........|.|..+|             .+ ...+....+.+|+
T Consensus        71 ~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~  150 (276)
T 3auv_A           71 SRFSGSGSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGG  150 (276)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTC
T ss_pred             CCEEEeccCCeEEEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCC
Confidence            356655433  3699999999999999999998755423334566766543             22 2334566788999


Q ss_pred             eEEEEEEEeecC--CCeEEEEECC--EEe-----------------ccCCcEEEEec--CceeEEEEccCCCCCCeEEEE
Q psy12131         66 RAEIICNVYANP--PAKVEWFRDG--TAI-----------------TLGGRIDMHVS--SEKHSLLVRHIKDTDFGNYMC  122 (245)
Q Consensus        66 ~~~l~C~~~~~~--~~~~~w~~~~--~~~-----------------~~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C  122 (245)
                      .+.|.|.+.+.+  .+.+.|+++.  ...                 ....++.+...  .....|.|.++..+|.|.|.|
T Consensus       151 ~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C  230 (276)
T 3auv_A          151 SLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYC  230 (276)
T ss_dssp             CEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEE
T ss_pred             eEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEE
Confidence            999999999876  4899999852  111                 01235554432  345689999999999999999


Q ss_pred             EEEeC
Q psy12131        123 QASNN  127 (245)
Q Consensus       123 ~~~n~  127 (245)
                      .+.|.
T Consensus       231 ~a~n~  235 (276)
T 3auv_A          231 ARFVF  235 (276)
T ss_dssp             EEECS
T ss_pred             EEEcC
Confidence            99997

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.72  E-value=5.4e-17  Score=115.11  Aligned_cols=127  Identities=14%  Similarity=0.226  Sum_probs=88.4

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCCCc---eeeEEEEEEecC---CeEEeecceEEecCCCeEEEEE
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIGES---TSKNFIVNVIYP---PEVSVEKQWIHTAPDMRAEIIC   71 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~---~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C   71 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|+|.+.+..+..   ....+.|.|..+   |.+..+.   .+.+|+.+.|.|
T Consensus        69 ~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~---~~~~G~~v~L~C  145 (214)
T 2zg1_A           69 GRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE---PLESGRPTRLSC  145 (214)
T ss_dssp             TTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--C---CCCTTCCEEEEE
T ss_pred             CceEEeccCCCCeEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCc---cccCCCeEEEEE
Confidence            45665532    3469999999999999999999875321   125778888763   4443322   256899999999


Q ss_pred             EEeec----CCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCce--eEEEEEE
Q psy12131         72 NVYAN----PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS--SQQFIQL  137 (245)
Q Consensus        72 ~~~~~----~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~--~~~~~~~  137 (245)
                      .+.+.    |.|.+.|++++.......      ....+.|.|..+..+|.|.|+|.|.|..+.  ....+.|
T Consensus       146 ~~~~~~~~~p~p~v~W~~~~~~~~~~~------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l  211 (214)
T 2zg1_A          146 SLPGSCEAGPPLTFSWTGNALSPLDPE------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL  211 (214)
T ss_dssp             ECTTCCSCSSCCEEEEESSTTSSSCSS------CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEEC
T ss_pred             EeccCCCCCCCceEEEeCCCCccCCCC------ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEE
Confidence            99764    788999999875432211      123467999999989999999999997644  3344443

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.72  E-value=3.4e-17  Score=119.32  Aligned_cols=129  Identities=17%  Similarity=0.244  Sum_probs=89.7

Q ss_pred             cceEEEeec--ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec---CCeEEeecceEEecCCCeEEEEEEEeec
Q psy12131          2 KEIELLYNR--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYAN   76 (245)
Q Consensus         2 ~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~   76 (245)
                      +|+.+...+  .+|.|.+++.+|+|.|+|.|.+..+........|.|..   +|.+...+.......|+.+.|.|.+.+.
T Consensus       102 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~  181 (254)
T 2c1o_A          102 DRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNF  181 (254)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEE
T ss_pred             ceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecc
Confidence            455555433  36999999999999999999987654223344566663   5766654433333457899999999884


Q ss_pred             -CC-CeEEEEECCEEeccCCc--EEEEecC-----ceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         77 -PP-AKVEWFRDGTAITLGGR--IDMHVSS-----EKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        77 -~~-~~~~w~~~~~~~~~~~~--~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                       |. +.+.|++++..+.....  .......     ..+.|.|..+..+|.|.|+|.|.|....
T Consensus       182 ~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  244 (254)
T 2c1o_A          182 YPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  244 (254)
T ss_dssp             BSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             cCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCC
Confidence             44 46999999987765411  1111111     1357999999999999999999998654

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.72  E-value=8.5e-17  Score=119.36  Aligned_cols=122  Identities=16%  Similarity=0.143  Sum_probs=92.6

Q ss_pred             CCCCCEEEEEEEEcCCCCceeeEEEEEEec--CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcE
Q psy12131         19 TLKLAGLYQCIASNNIGESTSKNFIVNVIY--PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI   96 (245)
Q Consensus        19 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~   96 (245)
                      ...|+|.|+|.|.+..+...+..+.|.|..  +|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++.........
T Consensus       149 ~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~  228 (289)
T 3mjg_X          149 GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEP  228 (289)
T ss_dssp             ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCC
T ss_pred             eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccc
Confidence            367999999999987665455566777775  677776665667889999999999999999999999866543322111


Q ss_pred             EEEe-----cCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131         97 DMHV-----SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus        97 ~~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      ....     ....+.|.|.++..+|.|.|.|.|.|..|.......|.+.
T Consensus       229 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~  277 (289)
T 3mjg_X          229 VTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT  277 (289)
T ss_dssp             EEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEE
T ss_pred             cccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEE
Confidence            1111     1234689999999999999999999999988877666654

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.72  E-value=3.5e-16  Score=112.94  Aligned_cols=126  Identities=13%  Similarity=0.157  Sum_probs=90.4

Q ss_pred             cceEEEeec--ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCC------eEEeecceEEecCCCeEEEEEEE
Q psy12131          2 KEIELLYNR--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP------EVSVEKQWIHTAPDMRAEIICNV   73 (245)
Q Consensus         2 ~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C~~   73 (245)
                      +|+.+...+  .+|.|.+++.+|+|.|+|.+.+..+......+.|.|..++      .+...+....+.+|+.+.|.|.+
T Consensus        64 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~  143 (240)
T 1moe_A           64 VRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTA  143 (240)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEE
T ss_pred             ccEEEEecCCeEEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEE
Confidence            355555432  3699999999999999999998765433455677887643      23344556678899999999999


Q ss_pred             eecCC--CeEEEEEC--CEEe------c-----------cCCcEEEEec--CceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         74 YANPP--AKVEWFRD--GTAI------T-----------LGGRIDMHVS--SEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        74 ~~~~~--~~~~w~~~--~~~~------~-----------~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .+.|.  +.+.|+++  +...      .           ...++.+...  .....|.|.++..+|.|.|.|.+.+.
T Consensus       144 ~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  220 (240)
T 1moe_A          144 SGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY  220 (240)
T ss_dssp             ESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred             cCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence            98874  58999984  2211      0           1234444322  34568999999999999999999853

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.72  E-value=2.7e-16  Score=113.76  Aligned_cols=126  Identities=17%  Similarity=0.218  Sum_probs=87.0

Q ss_pred             cceEEEee--cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCe-------------EEeecceEEecCCCe
Q psy12131          2 KEIELLYN--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE-------------VSVEKQWIHTAPDMR   66 (245)
Q Consensus         2 ~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-------------~~~~~~~~~~~~g~~   66 (245)
                      +|+.+...  ..+|.|.+++.+|+|.|+|.+.+..+......+.|.|..+|.             ....+....+.+|+.
T Consensus        60 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~  139 (242)
T 2znx_A           60 SRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQT  139 (242)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSC
T ss_pred             CCEEEecCCCEEEEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCe
Confidence            35665543  346999999999999999999987543223456778876553             222223345889999


Q ss_pred             EEEEEEEeecC--CCeEEEEEC--CEEec----------------cCCcEEEEe--cCceeEEEEccCCCCCCeEEEEEE
Q psy12131         67 AEIICNVYANP--PAKVEWFRD--GTAIT----------------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQA  124 (245)
Q Consensus        67 ~~l~C~~~~~~--~~~~~w~~~--~~~~~----------------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~  124 (245)
                      +.|.|.+.+.+  .+.+.|++.  +..+.                ...++.+..  ......|.|.+++.+|.|.|.|.+
T Consensus       140 v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  219 (242)
T 2znx_A          140 LSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCAN  219 (242)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEec
Confidence            99999999876  478999984  22210                133455433  234568999999999999999999


Q ss_pred             EeC
Q psy12131        125 SNN  127 (245)
Q Consensus       125 ~n~  127 (245)
                      .|.
T Consensus       220 ~~~  222 (242)
T 2znx_A          220 XDG  222 (242)
T ss_dssp             TTS
T ss_pred             cCC
Confidence            984

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.72  E-value=1.5e-15  Score=105.55  Aligned_cols=176  Identities=11%  Similarity=0.147  Sum_probs=114.0

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +|.+...+.. .+.+|+.++|.|.+.+ +.+.+.|++++..+...... .........|.|.++..+|.|.|.|.+.|..
T Consensus         4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~   80 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIYRVGE   80 (188)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS-SCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccc-cCCCcceeEEEeCcCCcccCeEEEEEecCCC
Confidence            5667666655 6789999999999874 45689999999765421100 0112245689999999999999999999875


Q ss_pred             cee--EEEEEEEec--CCCCcccc--CccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCccee
Q psy12131        129 GSS--QQFIQLSGI--PNIPVFQK--SSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIY  202 (245)
Q Consensus       129 g~~--~~~~~~~~~--~~~p~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (245)
                      +..  ...+.+.+.  ..+|.+..  ...+..|+.+.|.|.+.+..+  .| .|+++.. .. -........        
T Consensus        81 ~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~~~--~~-~w~k~g~-~~-~~~~~~~~~--------  147 (188)
T 1oll_A           81 LWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATS--MF-LLLKEGR-SS-HVQRGYGKV--------  147 (188)
T ss_dssp             EECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEECSSSCS--EE-EEEEESS-SC-EEEEEECSS--------
T ss_pred             CCCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEEcCCCCC--EE-EEEECCc-cc-cccccCCCc--------
Confidence            432  233444433  33444332  123567899999999865543  33 3556543 11 111111111        


Q ss_pred             eeEEEecCCCCCceEEEEEEEEecC-CCCCCCcceEEec
Q psy12131        203 TQSYNITGLQLFTQYEASVLAKNRF-GWSRPSKAYVFAT  240 (245)
Q Consensus       203 ~~~~~i~~l~~~~~y~~~v~a~N~~-G~~~~s~~~~~~t  240 (245)
                      ...|.|.++...+.+.|+|.|.|.. +.+..|..+.+..
T Consensus       148 ~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V  186 (188)
T 1oll_A          148 QAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLV  186 (188)
T ss_dssp             EEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEE
T ss_pred             eeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEe
Confidence            2678888999899999999999985 3466777766543

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.72  E-value=7.5e-17  Score=115.51  Aligned_cols=138  Identities=13%  Similarity=0.107  Sum_probs=87.7

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec----CCeEEeecceEEecCCCeEEEEEEE
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNV   73 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~   73 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|+|.+.+..+......+.|.|..    +|.+........+..|+.+.|.|.+
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~  145 (227)
T 1mju_H           66 NKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLV  145 (227)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEE
T ss_pred             CcEEEEEeCCCCeEEEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEe
Confidence            46676642    457999999999999999999986322122345677764    4555443322345679999999999


Q ss_pred             eec-CCC-eEEEEECCEEeccCCcEEEEecC---ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131         74 YAN-PPA-KVEWFRDGTAITLGGRIDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus        74 ~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      .|. |.+ .+.|++++..+.......+...+   ..+.|.|.....+| |.|+|.+.|..+.......+.+.
T Consensus       146 ~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~  216 (227)
T 1mju_H          146 KGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPR  216 (227)
T ss_dssp             EEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             ecEeCCCeEEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCC
Confidence            985 766 99999987653211000011111   13578898888877 99999999987665555555443

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.71  E-value=1.7e-16  Score=114.51  Aligned_cols=113  Identities=16%  Similarity=0.232  Sum_probs=87.5

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEec---CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR   85 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~   85 (245)
                      ...|.|.+++.+|+|.|+|.+.+..+.. .+..+.|.|..   +|.+...+. ..+.+|+.++|.|.+.+. .+.+.|++
T Consensus        59 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~-~~v~~G~~vtL~C~~~~~-~~~~~w~k  136 (242)
T 1p6f_A           59 KVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTFYCRLDTA-TSMFLLLK  136 (242)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEESC-SEEETTCEEEEEEECTTS-CSEEEEEE
T ss_pred             eeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccCC-CccCCCCcEEEEEecCCC-CCEEEEEE
Confidence            4569999999999999999998764322 46678888874   677665553 357899999999998753 56999999


Q ss_pred             CCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         86 DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ++..+..    ..........|.|.++..+|.|.|+|.+.|..
T Consensus       137 ~g~~~~~----~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~  175 (242)
T 1p6f_A          137 EGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  175 (242)
T ss_dssp             CSSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEEEEEET
T ss_pred             CCCccCc----cccCCCceEEEEeCCCccccCEEEEEEEECCC
Confidence            9875543    12233456789999999999999999999863

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.71  E-value=4.4e-17  Score=115.01  Aligned_cols=182  Identities=16%  Similarity=0.173  Sum_probs=113.0

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEe------------ccCCcEEEEecCceeEEEEccCCCCC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAI------------TLGGRIDMHVSSEKHSLLVRHIKDTD  116 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d  116 (245)
                      ++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+            ....++....    ..|.|.++...|
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~~~~~d   79 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP----TGITFKSVTRED   79 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET----TEEECSCCCTTS
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec----cEEEEeeCCHHH
Confidence            344555566677889999999999999889999999866442            1122333321    579999999999


Q ss_pred             CeEEEEEEEeCCc--eeEEEEE--EEecCCCCccccCccccCCCeeEEEEEe-CCCCCceEEEEEEEeec--CCCCeEEE
Q psy12131        117 FGNYMCQASNNLG--SSQQFIQ--LSGIPNIPVFQKSSRRLGPDGYRLVWQV-DTYSGIIQYLLKFRERE--ELTPWRNI  189 (245)
Q Consensus       117 ~g~y~C~~~n~~g--~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~  189 (245)
                      .|.|+|.+.|..|  .....+.  +...|..+..........++.+.|.|.+ .+.++. .+ .|+++..  ........
T Consensus        80 ~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~v-~W~~~~~~~~~~~~~~~  157 (209)
T 1nbq_A           80 TGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPS-EY-TWFKDGIVMPTNPKSTR  157 (209)
T ss_dssp             CSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCC-EE-EEEETTCCCCSCSSSSS
T ss_pred             CcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCc-ee-EEEECCeeCCCccccce
Confidence            9999999999755  2223333  3344444433333445778899999997 555433 33 3555433  00000000


Q ss_pred             eeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceE
Q psy12131        190 VIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYV  237 (245)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~  237 (245)
                      ...... .........+.|.++...+.+.|+|.|.|..|....+..+.
T Consensus       158 ~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~  204 (209)
T 1nbq_A          158 AFSNSS-YVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR  204 (209)
T ss_dssp             SCTTCC-CCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBC
T ss_pred             eeeccc-eEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEE
Confidence            000000 00000125688889988888888888999999884444443

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.71  E-value=1.8e-16  Score=113.01  Aligned_cols=127  Identities=15%  Similarity=0.172  Sum_probs=91.0

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEE-eecCCCeEEEEECCE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV-YANPPAKVEWFRDGT   88 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~w~~~~~   88 (245)
                      ..+|.|.+++.+|+|.|+|.+.+..+........+.+..+|.....+.......+..+.+.|.+ .+.|.+.+.|++++.
T Consensus        82 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~  161 (225)
T 4fmk_A           82 DATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLG  161 (225)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSC
T ss_pred             cEEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCc
Confidence            3569999999999999999999887765556666777777776666555556667777776665 567888999998765


Q ss_pred             EeccCCcEEEEecCc---eeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         89 AITLGGRIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        89 ~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      .............+.   .+.|.|..+..+|.|.|+|.|.|..+.......
T Consensus       162 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~  212 (225)
T 4fmk_A          162 GEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLP  212 (225)
T ss_dssp             CEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEE
T ss_pred             cccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEE
Confidence            443322211111111   347999999999999999999998876544433

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.71  E-value=4.5e-15  Score=118.65  Aligned_cols=132  Identities=16%  Similarity=0.193  Sum_probs=82.6

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCC----------C--ceeeEEEEEEec----CCeEEee-cceEE
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIG----------E--STSKNFIVNVIY----PPEVSVE-KQWIH   60 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~----------~--~~~~~~~l~v~~----~p~~~~~-~~~~~   60 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|.|.+.+..+          .  .......|.|..    +|.+... +....
T Consensus        67 ~R~~~~~~~~~~~~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~  146 (512)
T 1zvo_C           67 GRVTISVDTSRNQFSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRH  146 (512)
T ss_pred             CceEEEecCCCCEEEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCccc
Confidence            56776642    35799999999999999999997642          0  012345677763    4544321 11110


Q ss_pred             ecCCCeEEEEEEEeec-CCC-eEEEEECCEEeccC-CcEEEEecC---ceeEEEEccCCCCCCeEEEEEEEeCCceeEEE
Q psy12131         61 TAPDMRAEIICNVYAN-PPA-KVEWFRDGTAITLG-GRIDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF  134 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~~-~~~-~~~w~~~~~~~~~~-~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  134 (245)
                      ...++.+.|.|.+.+. |.| .+.|++++...... ........+   ..+.|.|...... .|.|+|.+.|..+.....
T Consensus       147 ~~~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~  225 (512)
T 1zvo_C          147 PKDNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKE  225 (512)
T ss_pred             ccCCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEE
Confidence            2246899999999987 655 89999865321100 000011111   1246788877666 899999999988765543

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.71  E-value=1.1e-16  Score=113.39  Aligned_cols=129  Identities=16%  Similarity=0.169  Sum_probs=91.5

Q ss_pred             cceEEEe--ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE---ecCCeEEeecceEEecCCCeEEEEEEEeec
Q psy12131          2 KEIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV---IYPPEVSVEKQWIHTAPDMRAEIICNVYAN   76 (245)
Q Consensus         2 ~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~   76 (245)
                      +|+.+..  +..+|.|.+++.+|+|.|+|.+.+..+........|.|   ..+|.+...+.......|+.+.|.|.+.+.
T Consensus        60 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~  139 (213)
T 3r06_A           60 SRFSGSGSGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNF  139 (213)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEE
T ss_pred             CcEEEeccCCEEEEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeee
Confidence            3555443  23469999999999999999999876543445566777   567777766555555678889999999886


Q ss_pred             CC--CeEEEEECCEEeccCC-cE-EEEecC-----ceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         77 PP--AKVEWFRDGTAITLGG-RI-DMHVSS-----EKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        77 ~~--~~~~w~~~~~~~~~~~-~~-~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      ++  +.+.|++++..+.... .. ......     ..+.|.|......|.|.|+|.+.|....
T Consensus       140 ~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~  202 (213)
T 3r06_A          140 YPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTST  202 (213)
T ss_dssp             BSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred             cCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccC
Confidence            54  3899999998876531 10 011101     1246778888788899999999997643

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.71  E-value=1e-16  Score=113.49  Aligned_cols=130  Identities=18%  Similarity=0.159  Sum_probs=88.9

Q ss_pred             cceEEEeec----ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec----CCeEEeecceEEecCCCeEEEEEEE
Q psy12131          2 KEIELLYNR----ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNV   73 (245)
Q Consensus         2 ~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~   73 (245)
                      +|+.+..+.    .+|.|.+++.+|+|.|+|.+.+.. . ......|.|..    +|.+...+....+..|+.+.|.|.+
T Consensus        65 ~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~-~-~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~  142 (210)
T 3d9a_H           65 SRISITRDTSKNQYYLDLNSVTTEDTATYYCANWDGD-Y-WGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLV  142 (210)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEETTSS-C-BCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEE
T ss_pred             ceEEEEecCCCCEEEEEECCCCcccCEEEEEEEecCc-c-cccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEE
Confidence            466666432    379999999999999999999863 1 22335666663    4565544433345689999999999


Q ss_pred             eec-CCC-eEEEEECCEEeccCCcEEEEecC---ceeEEEEccCCCCCCeEEEEEEEeCCceeEEE
Q psy12131         74 YAN-PPA-KVEWFRDGTAITLGGRIDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF  134 (245)
Q Consensus        74 ~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  134 (245)
                      .+. |.| .+.|++++..+.......+...+   ..+.|.|.....++ |.|+|.+.|..|.....
T Consensus       143 ~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          143 KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             EEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             eeEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence            987 878 99999987653211000011111   13468888888766 99999999998765443

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.71  E-value=2.3e-17  Score=121.55  Aligned_cols=218  Identities=11%  Similarity=0.034  Sum_probs=79.8

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEee-cceEEecCCCeEEEEEEEeecCCC---eEEEEECC
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE-KQWIHTAPDMRAEIICNVYANPPA---KVEWFRDG   87 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~---~~~w~~~~   87 (245)
                      .|.|.+++.+  |.|+|++... +....+.+.|.|..+|..... +....+.+|+.++|.|.+.+..+.   .+.|++++
T Consensus        51 ~~~l~~v~~~--~~y~C~~~~~-~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~  127 (291)
T 1mq8_A           51 VYELSNVQED--SQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE  127 (291)
T ss_dssp             EEEEESCCSC--CCCEEEEECS-SCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSS
T ss_pred             EEEEEecccC--CeEEEEEEcC-CccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECC
Confidence            3888998854  4699999744 344677888999887764332 222336789999999999875443   69999999


Q ss_pred             EEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCce--------eEEEEEEEecCCC---CccccCccccCCC
Q psy12131         88 TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS--------SQQFIQLSGIPNI---PVFQKSSRRLGPD  156 (245)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~--------~~~~~~~~~~~~~---p~~~~~~~~~~~~  156 (245)
                      ..+.....   ........+.+.....++.+.|+|+|.|..+.        ......+.+...|   +..........|+
T Consensus       128 ~~l~~~~~---~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~  204 (291)
T 1mq8_A          128 KELKREPA---VGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDT  204 (291)
T ss_dssp             SEEEEEEC---CBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC--------------------
T ss_pred             EEeecccC---CCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCC
Confidence            77653321   01122345666666666667999999997652        1222333333222   2222222356799


Q ss_pred             eeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecC--CC-CCceEEEEEEEEecCCCCCCC
Q psy12131        157 GYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITG--LQ-LFTQYEASVLAKNRFGWSRPS  233 (245)
Q Consensus       157 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--l~-~~~~y~~~v~a~N~~G~~~~s  233 (245)
                      .++|.|..++..|.....++|...+.... ..... .++.       ..++...  .. .++.|.|.|.|.|.......+
T Consensus       205 ~v~l~C~~~g~~P~~~~~v~w~~~g~~l~-~~~~~-~g~~-------~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~  275 (291)
T 1mq8_A          205 QGTVVCSLDGLFPVSEAQVHLALGDQRLN-PTVTY-GNDS-------FSAKASVSVTAEDEGTQRLTCAVILGNQSQETL  275 (291)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEEEEEcCCCCCCcccEEEEEECCEecC-ceeee-cCCe-------EEEEEecceeEcCCCCEEEEEEEEeCCcceEEE
Confidence            99999999988776544445444320000 00111 1110       1121111  12 466899999999865556666


Q ss_pred             cceEEecCCCC
Q psy12131        234 KAYVFATEGAE  244 (245)
Q Consensus       234 ~~~~~~t~~~~  244 (245)
                      ..+.+...++|
T Consensus       276 ~~l~v~~~~~~  286 (291)
T 1mq8_A          276 QTVTIYSFPAP  286 (291)
T ss_dssp             -----------
T ss_pred             EEEEEEcCCCc
Confidence            67776665544

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.71  E-value=1.2e-16  Score=110.29  Aligned_cols=116  Identities=11%  Similarity=0.126  Sum_probs=84.7

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEE-eecCCCe
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV-YANPPAK   80 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~   80 (245)
                      +|+.+..++.+|+|.+++.+|+|.|+|.+.+..  .....+.|.|..++..   | .+. ..+..+.|.|.+ .+ |.|.
T Consensus        60 ~R~~l~~~~~sL~I~~v~~~D~G~Y~C~v~~~~--~~~~~~~L~V~~~~~~---P-~i~-~~~~~v~L~C~~~~g-p~p~  131 (180)
T 2dru_A           60 DRVDLDKTNGALRIYNVSKEDRGDYYMRMLHET--EDQWKITMEVYEMVSK---P-MIY-WECSNATLTCEVLEG-TDVE  131 (180)
T ss_dssp             TTEEECTTTCCEEECSCCGGGCEEEEEEEESSS--EEEEEEEEEEECCCCC---C-EEE-EEGGGTEEEEECSSC-TTCE
T ss_pred             CeEEEeCCCccEEEcCCCHHHCeEEEEEEEcCC--eEEEEEEEEEECCCCC---C-EEE-ecCCCEEEEEEeCCC-CCCE
Confidence            577774456679999999999999999998765  3677888998765321   1 111 134569999999 55 8899


Q ss_pred             EEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         81 VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        81 ~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      +.|++++..+...         ....+.+..  .+|.|.|+|.|.|..+.......
T Consensus       132 i~W~~~~~~l~~~---------~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~  176 (180)
T 2dru_A          132 LKLYQGKEHLRSL---------RQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEV  176 (180)
T ss_dssp             EEEEETTEEEEEE---------SSSEEEEEC--SCCSSCEEEEEEETTEEEEEEEC
T ss_pred             EEEEECCeECcCC---------CCCEEEEEE--hhcCccEEEEEecCcCcccccee
Confidence            9999999876511         123455532  67999999999999987665543

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.71  E-value=4e-16  Score=111.18  Aligned_cols=129  Identities=14%  Similarity=0.197  Sum_probs=91.4

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCCCc--eeeEEEEEEe----cCCeEEeecceEEecCCCeEEEEE
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIGES--TSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIIC   71 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C   71 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|+|.+.+..+..  ....+.|.|.    .+|.+...+....+.+|+.+.|.|
T Consensus        68 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C  147 (220)
T 1pz5_B           68 GRFTISRDDSKSSVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGC  147 (220)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEE
T ss_pred             CcEEEEEeCCCCeEEEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEE
Confidence            46776643    2379999999999999999999875431  1234667776    346655444333456899999999


Q ss_pred             EEeec-CCC-eEEEEECCEEe---ccC-----CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         72 NVYAN-PPA-KVEWFRDGTAI---TLG-----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        72 ~~~~~-~~~-~~~w~~~~~~~---~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      .+.|. |.| .+.|++++...   ...     ..+.     ..+.|.|.....++ |.|+|.+.|..|...+.+.
T Consensus       148 ~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~-----~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~  216 (220)
T 1pz5_B          148 LVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYS-----LSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE  216 (220)
T ss_dssp             EEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEE-----EEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             EEEEEeCCCeEEEEecCCcccceEEcCCcccCCeEE-----EEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence            99987 888 99999977531   110     1111     13578888888766 9999999999987666554

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.71  E-value=8.2e-17  Score=115.97  Aligned_cols=131  Identities=15%  Similarity=0.150  Sum_probs=90.4

Q ss_pred             cceEEEe--ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe---cCCeEEeecceEEecCCCeEEEEEEEeec
Q psy12131          2 KEIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI---YPPEVSVEKQWIHTAPDMRAEIICNVYAN   76 (245)
Q Consensus         2 ~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~   76 (245)
                      +|+.+..  +..+|.|.+++.+|+|.|+|.+.+..+........|.|.   .+|.+...+.......|+.+.|.|.+.+.
T Consensus        83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~  162 (237)
T 3sob_L           83 SRFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNF  162 (237)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEE
T ss_pred             CcEEEEcCCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEccc
Confidence            3555443  335699999999999999999998765433444566663   46666554443334468899999999884


Q ss_pred             -C-CCeEEEEECCEEeccCC-c-EEEEe-cC----ceeEEEEccCCCCCCeEEEEEEEeCCceeE
Q psy12131         77 -P-PAKVEWFRDGTAITLGG-R-IDMHV-SS----EKHSLLVRHIKDTDFGNYMCQASNNLGSSQ  132 (245)
Q Consensus        77 -~-~~~~~w~~~~~~~~~~~-~-~~~~~-~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  132 (245)
                       | .+.+.|++++..+..+. . ..... ..    ..+.|.|.....+|.|.|+|.+.|......
T Consensus       163 ~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  227 (237)
T 3sob_L          163 YPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSP  227 (237)
T ss_dssp             BSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSC
T ss_pred             CCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCc
Confidence             4 47999999998876431 0 00000 00    134688888888899999999999875433

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.71  E-value=4.1e-16  Score=109.59  Aligned_cols=115  Identities=18%  Similarity=0.235  Sum_probs=84.5

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCC----CceeeEEEEEEec---CCeEEeecceEEecCCCeEEEEEEEeecCCCeEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIG----ESTSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE   82 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~   82 (245)
                      ...|.|.+++.+|+|.|+|.+.+...    ...+..+.|.|..   +|.+...+. ..+.+|+.+.|.|.+.+ +.+.+.
T Consensus        62 ~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~  139 (201)
T 1nkr_A           62 KANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYH  139 (201)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEE
T ss_pred             eEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEE
Confidence            45699999999999999999986531    2245677788874   466666554 35789999999999875 568999


Q ss_pred             EEECCEEeccCCcEEEEecC-ceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         83 WFRDGTAITLGGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        83 w~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      |++++..+...........+ ....|.|.++.  |.|.|+|.+.+..
T Consensus       140 w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          140 LSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             EEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             EEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence            99998765432211111111 25689999998  9999999999753

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.70  E-value=5.1e-16  Score=111.08  Aligned_cols=176  Identities=13%  Similarity=0.111  Sum_probs=104.5

Q ss_pred             ceEEecCCCeEEEEEEEeecCCC---eEEEEECCEE-----------ecc------CCcEEEEe---cCceeEEEEccCC
Q psy12131         57 QWIHTAPDMRAEIICNVYANPPA---KVEWFRDGTA-----------ITL------GGRIDMHV---SSEKHSLLVRHIK  113 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~~~---~~~w~~~~~~-----------~~~------~~~~~~~~---~~~~~~l~i~~~~  113 (245)
                      ..+.+.+|+++.|.|.+.+.+.+   .+.|++++..           +..      ..+.....   ......|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            34668899999999999876554   6999986532           110      11222211   1235689999999


Q ss_pred             CCCCeEEEEEEEeCCceeEEEEEEEecCCCCccccCccccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEee
Q psy12131        114 DTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVI  191 (245)
Q Consensus       114 ~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  191 (245)
                      .+|.|.|.|.+.|..|.....+.+...+.+...........+..+.|.|.+.+..|...+. |+++.+  ..........
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~-W~k~~~~~~~~~~~~~~~  170 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQ-WSNNKGENIPTVEAPVVA  170 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEE-EECTTSCBCCCEECCCEE
T ss_pred             hHHCeeEEEEEECCCcEEEEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEE-EEECCceEcCCCceEEEE
Confidence            9999999999999999888887777665554444444557788999999996542322222 444322  0111111111


Q ss_pred             CCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEe
Q psy12131        192 PSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       192 ~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~  239 (245)
                      ...+    ..  ....+..+...+.+.|.|.|.|.+|....+..+.+.
T Consensus       171 ~~~g----~~--~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~  212 (226)
T 4f80_A          171 DGVG----LY--AVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIA  212 (226)
T ss_dssp             CTTS----CE--EEEEEEEECC----CEEEEEEETTTTEEEEEEECCC
T ss_pred             CCCC----cE--EEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEEC
Confidence            1111    11  111122334455556667799999987666655553

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.70  E-value=2.7e-16  Score=98.33  Aligned_cols=94  Identities=19%  Similarity=0.341  Sum_probs=82.5

Q ss_pred             ecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         47 IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        47 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      ..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+...+....|.|.++..+|.|.|.|.+.|
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   85 (103)
T 3qp3_A            6 DHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTN   85 (103)
T ss_dssp             CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEe
Confidence            35677777777788899999999999999999999999999999887788777766778899999999999999999999


Q ss_pred             CCceeEEEEEEEec
Q psy12131        127 NLGSSQQFIQLSGI  140 (245)
Q Consensus       127 ~~g~~~~~~~~~~~  140 (245)
                      ..|.....+.|.+.
T Consensus        86 ~~G~~~~~~~l~V~   99 (103)
T 3qp3_A           86 YKGEASDYATLDVT   99 (103)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEE
Confidence            99988887777664

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.70  E-value=6e-16  Score=112.22  Aligned_cols=126  Identities=15%  Similarity=0.274  Sum_probs=86.9

Q ss_pred             cceEEEeec--ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCC------------e-EEeecceEEecCCCe
Q psy12131          2 KEIELLYNR--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP------------E-VSVEKQWIHTAPDMR   66 (245)
Q Consensus         2 ~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------------~-~~~~~~~~~~~~g~~   66 (245)
                      +|+.+...+  .+|.|.+++.+|+|.|+|.+.+..+......+.|.|..++            . ....+....+.+|+.
T Consensus        65 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~  144 (247)
T 1svz_A           65 DRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGET  144 (247)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCC
T ss_pred             CcEEeccCCCEEEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCc
Confidence            355554332  3699999999999999999998754322334667777543            1 222333445889999


Q ss_pred             EEEEEEEeecC--CCeEEEEECC--EEe------c-----------cCCcEEEEe--cCceeEEEEccCCCCCCeEEEEE
Q psy12131         67 AEIICNVYANP--PAKVEWFRDG--TAI------T-----------LGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQ  123 (245)
Q Consensus        67 ~~l~C~~~~~~--~~~~~w~~~~--~~~------~-----------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~  123 (245)
                      +.|.|.+.+.+  .+.+.|++..  ...      .           ...++.+..  ......|.|.+++.+|.|.|.|.
T Consensus       145 v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  224 (247)
T 1svz_A          145 VKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCV  224 (247)
T ss_dssp             EEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEE
Confidence            99999998875  4689999852  111      0           123444433  33456899999999999999999


Q ss_pred             EEeC
Q psy12131        124 ASNN  127 (245)
Q Consensus       124 ~~n~  127 (245)
                      +.|.
T Consensus       225 a~n~  228 (247)
T 1svz_A          225 RDRH  228 (247)
T ss_dssp             EEEG
T ss_pred             Eecc
Confidence            9985

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.70  E-value=1e-17  Score=118.74  Aligned_cols=130  Identities=16%  Similarity=0.205  Sum_probs=89.3

Q ss_pred             cceEEEee--cceEEEeccCCCCCEEEEEEEEcCCCCc--eeeEEEEEEe----cCCeEEeecceEEecCCCeEEEEEEE
Q psy12131          2 KEIELLYN--RESLDLDRVTLKLAGLYQCIASNNIGES--TSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNV   73 (245)
Q Consensus         2 ~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~   73 (245)
                      +|+.+...  ...|.|.+++.+|+|.|+|.+.|..+..  ......|.|.    .+|.+...+....+..|+.+.|.|.+
T Consensus        58 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~  137 (212)
T 1nfd_E           58 ERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLV  137 (212)
T ss_dssp             TTEEEEEETTEEEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEE
T ss_pred             ccEEEEeeCCEEEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEE
Confidence            35555543  2479999999999999999999732211  2234556663    45666554433334578999999999


Q ss_pred             eec-CC-CeEEEEECCEEeccCCcEE-EEecC----ceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131         74 YAN-PP-AKVEWFRDGTAITLGGRID-MHVSS----EKHSLLVRHIKDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus        74 ~~~-~~-~~~~w~~~~~~~~~~~~~~-~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  131 (245)
                      .|. |. +.+.|++++..+....... .....    ..+.|.|..+..+|.|.|+|.|.|..+..
T Consensus       138 ~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (212)
T 1nfd_E          138 NDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV  202 (212)
T ss_dssp             EEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             EeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceE
Confidence            987 54 7999999998876542211 00000    12458899999999999999999987653

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.70  E-value=1.5e-15  Score=108.37  Aligned_cols=134  Identities=10%  Similarity=0.172  Sum_probs=90.2

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCC---C--ceeeEEEEEEec----CCeEEeecceEEecCCCeEE
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIG---E--STSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAE   68 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~---~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~   68 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|+|.+.+..|   .  .....+.|.|..    +|.+...+....+..|+.+.
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~  145 (223)
T 1dee_B           66 GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVA  145 (223)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEE
T ss_pred             CeEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEE
Confidence            47777653    34799999999999999999998653   1  112345778873    45554322222346899999


Q ss_pred             EEEEEeec-CCC-eEEEEE-CCEEeccCCcE-EEEecC---ceeEEEEccCCC--CCCeEEEEEEEeCCceeEEEE
Q psy12131         69 IICNVYAN-PPA-KVEWFR-DGTAITLGGRI-DMHVSS---EKHSLLVRHIKD--TDFGNYMCQASNNLGSSQQFI  135 (245)
Q Consensus        69 l~C~~~~~-~~~-~~~w~~-~~~~~~~~~~~-~~~~~~---~~~~l~i~~~~~--~d~g~y~C~~~n~~g~~~~~~  135 (245)
                      |.|.+.+. |.| .+.|++ ++..+.....+ .....+   ..+.|.|.....  .|.|.|+|.+.|..+.....+
T Consensus       146 L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          146 VGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             EEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             EEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            99999886 767 999999 88766430000 000011   134677877665  678999999999988765544

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.70  E-value=1.6e-15  Score=110.57  Aligned_cols=126  Identities=13%  Similarity=0.211  Sum_probs=88.0

Q ss_pred             cceEEEeec--ceEEEeccCCCCCEEEEEEEEcCCCC--ceeeEEEEEEecCC---------------------eEEeec
Q psy12131          2 KEIELLYNR--ESLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVNVIYPP---------------------EVSVEK   56 (245)
Q Consensus         2 ~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~~p---------------------~~~~~~   56 (245)
                      +|+.+...+  .+|.|.+++.+|+|.|+|.+.+..+.  .....+.|.|..+|                     .+...+
T Consensus        63 ~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (256)
T 3ux9_B           63 DRFSGSKSGTSASLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESG  142 (256)
T ss_dssp             TTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEEC
T ss_pred             CcEEEEccCCEEEEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCC
Confidence            455555433  36999999999999999999986543  12345677777654                     233333


Q ss_pred             ceEEecCCCeEEEEEEEeecC--CCeEEEEEC--CEEe-----------------ccCCcEEEEec--CceeEEEEccCC
Q psy12131         57 QWIHTAPDMRAEIICNVYANP--PAKVEWFRD--GTAI-----------------TLGGRIDMHVS--SEKHSLLVRHIK  113 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~--~~~~-----------------~~~~~~~~~~~--~~~~~l~i~~~~  113 (245)
                       ...+.+|+.+.|.|.+.+.+  .+.+.|+++  +..+                 ....++.+...  .....|.|.+++
T Consensus       143 -~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~  221 (256)
T 3ux9_B          143 -GGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLR  221 (256)
T ss_dssp             -CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             -CeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCC
Confidence             34588999999999999876  679999985  2211                 11124554432  345679999999


Q ss_pred             CCCCeEEEEEEEeCC
Q psy12131        114 DTDFGNYMCQASNNL  128 (245)
Q Consensus       114 ~~d~g~y~C~~~n~~  128 (245)
                      .+|.|.|.|.+.|..
T Consensus       222 ~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          222 AEDTAVYYCARYIDF  236 (256)
T ss_dssp             GGGCEEEEEEEEETT
T ss_pred             hhhCEEEEEEEEcCC
Confidence            999999999999964

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.69  E-value=9.8e-16  Score=97.56  Aligned_cols=98  Identities=18%  Similarity=0.287  Sum_probs=82.8

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+........|.|.++..+|.|.|+|.+.|.
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   85 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENK   85 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEEC
Confidence            46777777778889999999999999999999999999999888777777776666789999999999999999999999


Q ss_pred             CceeEEEEEEEec--CCCCc
Q psy12131        128 LGSSQQFIQLSGI--PNIPV  145 (245)
Q Consensus       128 ~g~~~~~~~~~~~--~~~p~  145 (245)
                      .|.....+.|.+.  |.+|.
T Consensus        86 ~g~~~~~~~l~V~~~p~~P~  105 (114)
T 2cqv_A           86 LGSRQAQVNLTVVDKPDPPA  105 (114)
T ss_dssp             SCEEECCEEEEEECSCSCCC
T ss_pred             CCcEEEEEEEEEECCCCCCC
Confidence            9987776666654  44443

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.69  E-value=2.7e-15  Score=103.77  Aligned_cols=162  Identities=12%  Similarity=0.170  Sum_probs=103.7

Q ss_pred             EecCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12131         60 HTAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL  137 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~  137 (245)
                      .+.+|+.+.|.|.+.+.+.|  .+.|++++..+......     .....|.|.  ...|.|.|.|.+.|... ....+.+
T Consensus         9 ~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-----~~~~~l~i~--~~~d~G~Y~C~~~n~~~-~~~~l~V   80 (184)
T 3b5h_A            9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVD--SDDQWGEYSCVFLPEPM-GTANIQL   80 (184)
T ss_dssp             EEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEEC--GGGCCEEEEEEEESTTS-CEEEEEE
T ss_pred             EEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-----CCcEEEEEe--chhhCeEEEEEEECCcC-cEEEEEE
Confidence            45689999999999988777  89999999887655422     123356666  57899999999998432 3334444


Q ss_pred             EecCCCCccccCccccCCCeeEEEEEeCCCCCceEEEEEEEe---ec--C--C--CCeEEEeeCCCCCCCcceeeeEEEe
Q psy12131        138 SGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRE---RE--E--L--TPWRNIVIPSDGSLAGPIYTQSYNI  208 (245)
Q Consensus       138 ~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~--~--~--~~~~~~~~~~~~~~~~~~~~~~~~i  208 (245)
                      ...|.............++.+.|.|.+.+.++...+. |++.   ..  .  .  ..+ .+....        ....+.|
T Consensus        81 ~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~-W~~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~~L~i  150 (184)
T 3b5h_A           81 HGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWA-WYKITDSEDKALMNGSESRF-FVSSSQ--------GRSELHI  150 (184)
T ss_dssp             CCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEE-EEECCSSSCEECCTTGGGTE-EEEEET--------TEEEEEE
T ss_pred             ecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEE-EEEcCCCCCEEeecCCCCEE-EEEecC--------CeeEEEE
Confidence            3332221111122356789999999997766333333 5552   11  0  0  111 111101        1257899


Q ss_pred             cCCC-CCceEEEEEEEEecCCCCCCCcceEEe
Q psy12131        209 TGLQ-LFTQYEASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       209 ~~l~-~~~~y~~~v~a~N~~G~~~~s~~~~~~  239 (245)
                      .++. ..+.+.|+|.|.|.+|....+..+.+.
T Consensus       151 ~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          151 ENLNMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             CSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eeccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence            9998 899999999999999987666555543

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.69  E-value=5.7e-16  Score=112.52  Aligned_cols=115  Identities=15%  Similarity=0.254  Sum_probs=83.3

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecC-------------------CeEEeecceEEecCCCeEEEEEE
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP-------------------PEVSVEKQWIHTAPDMRAEIICN   72 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-------------------p~~~~~~~~~~~~~g~~~~l~C~   72 (245)
                      +|.|.+++.+|+|.|+|.+.+..+........|.|..+                   +.+...+....+.+|+.+.|.|.
T Consensus        75 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~  154 (250)
T 3esu_F           75 SLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCK  154 (250)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEE
T ss_pred             EEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEE
Confidence            69999999999999999999876543344456777653                   22333445567889999999999


Q ss_pred             EeecC--CCeEEEEEC--CEEec-----------------cCCcEEEEec--CceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         73 VYANP--PAKVEWFRD--GTAIT-----------------LGGRIDMHVS--SEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        73 ~~~~~--~~~~~w~~~--~~~~~-----------------~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      +.+.+  .+.+.|+++  +..+.                 ...++.+...  .....|.|.++..+|.|.|.|.+.+
T Consensus       155 ~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          155 DSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             CCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            98876  679999986  32211                 1134444422  3456899999999999999999997

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.68  E-value=1.5e-15  Score=110.89  Aligned_cols=165  Identities=13%  Similarity=0.217  Sum_probs=114.7

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCC-eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+...          ...|.|.++..+|.|.|+|.+.|.
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~----------~~~l~i~~~~~~d~G~Y~C~~~~~   70 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS----------TPSYRITSASVNDSGEYRCQRGLS   70 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC----------SSEEEESSCCGGGCEEEEEEESSS
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc----------CCeEEEecCCcccCeEEEEEEecC
Confidence            4667777777778899999999999988888 99999999887643          346999999999999999999987


Q ss_pred             CceeEEEEEEEecCCCCcccc-CccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEE
Q psy12131        128 LGSSQQFIQLSGIPNIPVFQK-SSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSY  206 (245)
Q Consensus       128 ~g~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (245)
                      .+.....+.+.  ..+..... ......++.+.|.|......|...+. |+++..   ... ...          ....+
T Consensus        71 ~~s~~~~l~v~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~-W~~~g~---~~~-~~~----------~~~~l  133 (262)
T 3rjd_A           71 GRSDPIQLEIH--RGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVL-YYRNGK---AFK-FFH----------WNSNL  133 (262)
T ss_dssp             CCCCCEEEEEE--CSSEEEEESCSEEETTSCEEEEEEEGGGCCCEEEE-EEETTE---EEE-EEE----------ECCCE
T ss_pred             CccccEEEEEe--ccceEecCCCeEEecCCeEEEEEEccCCCCCceEE-EEECCc---ccc-ccC----------CCCeE
Confidence            76655555444  22222221 12345789999999994433433333 444322   111 110          01458


Q ss_pred             EecCCCCCceEEEEEEEEecCCCCCCCcceEEec
Q psy12131        207 NITGLQLFTQYEASVLAKNRFGWSRPSKAYVFAT  240 (245)
Q Consensus       207 ~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t  240 (245)
                      .|..+...+.+.|+|.|.|..|....+..+.+..
T Consensus       134 ~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~  167 (262)
T 3rjd_A          134 TILKTNISHNGTYHCSGMGKHRYTSAGISVTVKE  167 (262)
T ss_dssp             EESSCCGGGCEEEEEEEESSSEEEEECEEEEEEC
T ss_pred             EEEECChhhCEEEEEEEeCCCCccccceEEEecc
Confidence            8889999999999999999987655555555553

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.68  E-value=5.5e-15  Score=104.21  Aligned_cols=164  Identities=15%  Similarity=0.160  Sum_probs=107.9

Q ss_pred             EEecCCCeEEEEEEEeecCCCeEEEEECCEEecc-------------------CCcEEEEecCceeEEEEccCCCCCCeE
Q psy12131         59 IHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL-------------------GGRIDMHVSSEKHSLLVRHIKDTDFGN  119 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~-------------------~~~~~~~~~~~~~~l~i~~~~~~d~g~  119 (245)
                      ..+.+|+.+.|.|...+.+.+.+.|++++.....                   ..++.+.   ....|.|.++...|.|.
T Consensus         9 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~---~~~~L~i~~v~~~D~G~   85 (208)
T 3r4d_A            9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY---SNGSLLFQMITMKDMGV   85 (208)
T ss_dssp             SEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEEC---TTSCEEECSCCGGGCEE
T ss_pred             ceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEe---cCCeEEEccccccCCeE
Confidence            4577999999999988888889999986532211                   1122221   12479999999999999


Q ss_pred             EEEEEEeCC-ceeEEEEEEEecC--CCCccccC-ccccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCC
Q psy12131        120 YMCQASNNL-GSSQQFIQLSGIP--NIPVFQKS-SRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPS  193 (245)
Q Consensus       120 y~C~~~n~~-g~~~~~~~~~~~~--~~p~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  193 (245)
                      |+|.+.+.. +.....+.+.+..  ..|.+... .....++.+.|.|.+.+.+|  .+ .|+++..  ....-..+  ..
T Consensus        86 Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~~~~pp--~i-~W~~~g~~l~~~~~~~~--~~  160 (208)
T 3r4d_A           86 YTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIGA--NI-QWLFNSQSLQLTERMTL--SQ  160 (208)
T ss_dssp             EEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEECSCTTC--EE-EEEETTEECCCCSSEEE--ET
T ss_pred             EEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEECCCCCC--ce-EEEECCEeCCCCCCeEE--cC
Confidence            999999985 5555555555543  33333322 22567889999999977654  23 2444332  11111111  11


Q ss_pred             CCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEe
Q psy12131        194 DGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       194 ~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~  239 (245)
                      ..        ..+.|.++...+.+.|+|.|.|.+|... |..+.+.
T Consensus       161 ~~--------~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-s~~~~l~  197 (208)
T 3r4d_A          161 NN--------SILRIDPIKREDAGEYQCEISNPVSVRR-SNSIKLD  197 (208)
T ss_dssp             TT--------TEEEESSCCGGGCEEEEEEEECTTCCEE-CCCEEEC
T ss_pred             CC--------CEEEEeccCHHhCeEEEEEEecCCCccc-CCceeee
Confidence            11        4688999999999999999999999864 4444444

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.68  E-value=1.6e-16  Score=116.52  Aligned_cols=118  Identities=18%  Similarity=0.329  Sum_probs=93.2

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCC-CCc--eeeEEEEEEecCCeEEee--cceEEecCCCeEEEEEEEeecCCCeEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNI-GES--TSKNFIVNVIYPPEVSVE--KQWIHTAPDMRAEIICNVYANPPAKVEWF   84 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~--~~~~~~l~v~~~p~~~~~--~~~~~~~~g~~~~l~C~~~~~~~~~~~w~   84 (245)
                      .+.|.|..+..+|.|.|+|.|.|.. |..  .+..+.|.|..+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|+
T Consensus       141 ~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~  220 (265)
T 2oz4_A          141 RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCL  220 (265)
T ss_dssp             EECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEE
T ss_pred             cEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEE
Confidence            3458999999999999999998654 552  237788999988887554  34567889999999999999999999999


Q ss_pred             ECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131         85 RDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      +++..+....           .+.  .+..+|.|.|+|.|.|..|.....+.|.+.
T Consensus       221 ~~~~~~~~~g-----------~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  263 (265)
T 2oz4_A          221 KDGTFPLPIG-----------ESV--TVTRDLEGTYLCRARSTQGEVTREVTVNVL  263 (265)
T ss_dssp             ETTTEECCTT-----------SCE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ECCcccCCCC-----------cEE--EeehhhCeEEEEEEECCCCcEEEEEEEEEe
Confidence            9887322221           121  367789999999999999998888887764

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.68  E-value=6.4e-16  Score=110.76  Aligned_cols=134  Identities=12%  Similarity=0.104  Sum_probs=88.4

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCC------C--ceeeEEEEEEec----CCeEEeecceEEecCCC
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIG------E--STSKNFIVNVIY----PPEVSVEKQWIHTAPDM   65 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~   65 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|+|.+.+..|      .  .....+.|.|..    +|.+...+....+..|+
T Consensus        67 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~  146 (228)
T 3bae_H           67 SRLTISKDTSRDMVFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGS  146 (228)
T ss_dssp             GGEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCS
T ss_pred             CcEEEEEcCCCCeEEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCC
Confidence            46776642    35799999999999999999998654      1  111336777773    56655444333456899


Q ss_pred             eEEEEEEEeec-CCC-eEEEEECCEEeccCCcEEEEecC---ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         66 RAEIICNVYAN-PPA-KVEWFRDGTAITLGGRIDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        66 ~~~l~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      .+.|.|.+.+. |.| .+.|++++..+.......+...+   ..+.|.|.....++ |.|+|.+.|..+.......
T Consensus       147 ~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~  221 (228)
T 3bae_H          147 SVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKK  221 (228)
T ss_dssp             EEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             CEEEEEEEccEeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEE
Confidence            99999999886 777 99999987643211111111111   13468888887756 9999999999876554443

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.68  E-value=3.8e-16  Score=116.04  Aligned_cols=127  Identities=14%  Similarity=0.234  Sum_probs=91.3

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCC-CCc---eeeEEEEEEec----------------CCeEEeecc
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNI-GES---TSKNFIVNVIY----------------PPEVSVEKQ   57 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~---~~~~~~l~v~~----------------~p~~~~~~~   57 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|+|.+.+.. |..   ......|.|..                ++.+...+.
T Consensus        88 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~  167 (291)
T 2gki_A           88 GKATLTSDKSSSTAYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPS  167 (291)
T ss_dssp             TTBCEEEEGGGTEEEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCS
T ss_pred             CCEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCC
Confidence            45555542    3569999999999999999999864 211   11234677766                334444555


Q ss_pred             eEEecCCCeEEEEEEEeecCCC------eEEEEECC--E---Eec---------cCCcEEEEecCceeEEEEccCCCCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA------KVEWFRDG--T---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDF  117 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~------~~~w~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~  117 (245)
                      .+.+.+|+.+.|.|.+.+.+.+      .+.|++..  .   .+.         ...++..........|.|.++..+|.
T Consensus       168 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds  247 (291)
T 2gki_A          168 SLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDL  247 (291)
T ss_dssp             EEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHC
Confidence            6778899999999999887765      89999852  2   111         03455554445567899999999999


Q ss_pred             eEEEEEEEeCC
Q psy12131        118 GNYMCQASNNL  128 (245)
Q Consensus       118 g~y~C~~~n~~  128 (245)
                      |.|.|.+.|..
T Consensus       248 G~Y~C~a~~~~  258 (291)
T 2gki_A          248 AVYYCKQSYYH  258 (291)
T ss_dssp             EEEEEEEEETT
T ss_pred             EEEEEEEccCC
Confidence            99999999854

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.68  E-value=5e-17  Score=116.93  Aligned_cols=133  Identities=14%  Similarity=0.192  Sum_probs=90.6

Q ss_pred             ceEEEe--ecceEEEeccCCCCCEEEEEEEEcCCCC--ceeeEEEEEEe----cCCeEEeecceEEecCCCeEEEEEEEe
Q psy12131          3 EIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEIICNVY   74 (245)
Q Consensus         3 ~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~   74 (245)
                      |+.+..  +..+|.|.+++.+|+|.|+|.+.+..+.  .....+.|.|.    .+|.+...+.......|+.+.|.|.+.
T Consensus        81 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~  160 (234)
T 2j6e_L           81 RFSGSKSGTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLIS  160 (234)
T ss_dssp             TEEEEEETTEEEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCC
T ss_pred             cEEEEecCCeEEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEE
Confidence            555543  2347999999999999999999998762  12234556663    355554433322334688999999998


Q ss_pred             ecCC--CeEEEEECCEEeccCCcEE-EE--ecC---ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131         75 ANPP--AKVEWFRDGTAITLGGRID-MH--VSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI  135 (245)
Q Consensus        75 ~~~~--~~~~w~~~~~~~~~~~~~~-~~--~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  135 (245)
                      +.++  +.+.|++++..+....... ..  .++   ..+.|.|.....+|.|.|+|.+.|..+...+++
T Consensus       161 g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  229 (234)
T 2j6e_L          161 DFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  229 (234)
T ss_dssp             BCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred             EEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence            8544  3899999998876432110 00  011   235788899989999999999999877654444

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.68  E-value=1.5e-15  Score=110.69  Aligned_cols=120  Identities=17%  Similarity=0.197  Sum_probs=87.2

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCc---eeeEEEEEEec--------------------CCeEEeecceEEecCCCe
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGES---TSKNFIVNVIY--------------------PPEVSVEKQWIHTAPDMR   66 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~---~~~~~~l~v~~--------------------~p~~~~~~~~~~~~~g~~   66 (245)
                      ..+|.|.+++.+|+|.|+|.+.+..+..   ......|.|..                    +|.+...+....+.+|+.
T Consensus        75 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~  154 (256)
T 3tf7_C           75 SFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGEN  154 (256)
T ss_dssp             EEEEEESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCC
T ss_pred             EEEEEECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCc
Confidence            3469999999999999999999875421   22345667664                    566777777778889999


Q ss_pred             EEEEEEEeecCCCeEEEEECC--EE---ec------------cCCcEEEEe-cCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         67 AEIICNVYANPPAKVEWFRDG--TA---IT------------LGGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        67 ~~l~C~~~~~~~~~~~w~~~~--~~---~~------------~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +.|.|.+.+. .+.+.|++..  ..   +.            ...++.+.. ......|.|.++..+|.|.|.|.+.|..
T Consensus       155 v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~  233 (256)
T 3tf7_C          155 VTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAP  233 (256)
T ss_dssp             EEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEET
T ss_pred             EEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCC
Confidence            9999999876 7799999832  11   10            012333322 2345589999999999999999999976


Q ss_pred             ce
Q psy12131        129 GS  130 (245)
Q Consensus       129 g~  130 (245)
                      |.
T Consensus       234 g~  235 (256)
T 3tf7_C          234 GQ  235 (256)
T ss_dssp             TE
T ss_pred             Cc
Confidence            64

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.68  E-value=8.4e-15  Score=105.69  Aligned_cols=178  Identities=11%  Similarity=0.154  Sum_probs=114.2

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .+|.+...+.. .+.+|+.++|.|.+.+ +.+.+.|++++..+..... ..........|.|.++..+|.|.|+|.+.|.
T Consensus         6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   82 (242)
T 1p6f_A            6 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCIYRVG   82 (242)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccc-cccCCcceeEEEecCCCcccCeEEEEEEecC
Confidence            46777766655 6789999999999864 4568999999876542100 0011224568999999999999999999886


Q ss_pred             Ccee--EEEEEEEe--cCCCCcccc--CccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcce
Q psy12131        128 LGSS--QQFIQLSG--IPNIPVFQK--SSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPI  201 (245)
Q Consensus       128 ~g~~--~~~~~~~~--~~~~p~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (245)
                      .+..  ...+.+.+  ...+|.+..  ...+..|+.++|.|...+..+  .| .|+++.. .. -.......        
T Consensus        83 ~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~~~--~~-~w~k~g~-~~-~~~~~~~~--------  149 (242)
T 1p6f_A           83 ELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATS--MF-LLLKEGR-SS-HVQRGYGK--------  149 (242)
T ss_dssp             TEECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEECTTSCS--EE-EEEECSS-SC-EEEEEECS--------
T ss_pred             CccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEecCCCCC--EE-EEEECCC-cc-CccccCCC--------
Confidence            5432  22334333  233343322  133568999999999865543  33 3565543 11 11111111        


Q ss_pred             eeeEEEecCCCCCceEEEEEEEEecC-CCCCCCcceEEecC
Q psy12131        202 YTQSYNITGLQLFTQYEASVLAKNRF-GWSRPSKAYVFATE  241 (245)
Q Consensus       202 ~~~~~~i~~l~~~~~y~~~v~a~N~~-G~~~~s~~~~~~t~  241 (245)
                      ....|.|.++...+.+.|+|.|.|.. +.+..|..+.+...
T Consensus       150 ~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  190 (242)
T 1p6f_A          150 VQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  190 (242)
T ss_dssp             SEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEE
T ss_pred             ceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEe
Confidence            12678899999898999999999974 45667776655544

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.68  E-value=7.5e-16  Score=109.79  Aligned_cols=130  Identities=15%  Similarity=0.190  Sum_probs=89.6

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCCC--ceeeEEEEEEec----CCeEEeecceEEecCCCeEEEEE
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIIC   71 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C   71 (245)
                      +|+.+..+    ..+|+|.+++.+|+|.|.|.+.+..+.  .....+.|.|..    +|.+...+ ...+..|+.+.|.|
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C  144 (220)
T 2fbj_H           66 DKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGC  144 (220)
T ss_dssp             TTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEE
T ss_pred             CcEEEEeeCCCCEEEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEE
Confidence            57777643    357999999999999999999986542  112345777764    45554444 33456899999999


Q ss_pred             EEeec-CC--CeEEEEECCEEecc-CCcEEEEecCc---eeEEEEccCCCCCCeEEEEEEEeCCceeE
Q psy12131         72 NVYAN-PP--AKVEWFRDGTAITL-GGRIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGSSQ  132 (245)
Q Consensus        72 ~~~~~-~~--~~~~w~~~~~~~~~-~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  132 (245)
                      .+.+. |.  +.+.|++++..+.. .........+.   .+.|.|......|.|.|+|.+.|..+...
T Consensus       145 ~~~g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          145 LIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             EEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             EEEeEECCCcEEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            99886 66  69999998865421 00001111111   23588888888899999999999987644

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.68  E-value=2.2e-16  Score=114.88  Aligned_cols=129  Identities=16%  Similarity=0.221  Sum_probs=88.7

Q ss_pred             cceEEEeec--ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec---CCeEEeecceEEecCCCeEEEEEEEeec
Q psy12131          2 KEIELLYNR--ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYAN   76 (245)
Q Consensus         2 ~~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~   76 (245)
                      +|+.+...+  .+|.|.+++.+|+|.|+|.+.+..+........|.|..   +|.+...+....+..|+.+.|.|.+.+.
T Consensus        98 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~  177 (252)
T 3bkj_L           98 DRFSGSGSGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNF  177 (252)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEE
T ss_pred             CceEEEccCCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeE
Confidence            355555432  36999999999999999999987553223345677764   5666654433334468899999999884


Q ss_pred             -CCC-eEEEEECCEEeccCCcEE--EEe-cC----ceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         77 -PPA-KVEWFRDGTAITLGGRID--MHV-SS----EKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        77 -~~~-~~~w~~~~~~~~~~~~~~--~~~-~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                       |.+ .+.|++++..+.......  ... ..    ..+.|.|..+..+|.|.|+|.+.|....
T Consensus       178 ~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          178 YPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             BSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             eCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence             443 799999998775441110  000 11    1246889999888999999999997644

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.68  E-value=2e-15  Score=93.60  Aligned_cols=93  Identities=24%  Similarity=0.344  Sum_probs=81.0

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .+|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+....++.+...+....|.|.++..+|.|.|.|.+.|.
T Consensus         5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~   84 (99)
T 3puc_A            5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNS   84 (99)
T ss_dssp             EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeC
Confidence            45667677777888999999999999999999999999999988878888777667778999999999999999999999


Q ss_pred             CceeEEEEEEEec
Q psy12131        128 LGSSQQFIQLSGI  140 (245)
Q Consensus       128 ~g~~~~~~~~~~~  140 (245)
                      .|.....+.|.+.
T Consensus        85 ~g~~~~~~~l~V~   97 (99)
T 3puc_A           85 AGSVSSSCKLTIK   97 (99)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCcEeEEEEEEEE
Confidence            9988877776653

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.68  E-value=5.4e-18  Score=132.93  Aligned_cols=169  Identities=11%  Similarity=0.101  Sum_probs=103.7

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec------------CCeEEeecceEE--ecCCCeEEEEEEEeec
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY------------PPEVSVEKQWIH--TAPDMRAEIICNVYAN   76 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~------------~p~~~~~~~~~~--~~~g~~~~l~C~~~~~   76 (245)
                      +.|.|.+++.+| |.|+|.|.|..+. ......+.+..            .|.+...+....  +.+|+.+.|.|.+.|.
T Consensus       180 s~L~i~~~~~~d-g~Y~C~a~n~~~~-~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~  257 (434)
T 1igy_B          180 SSVTVPSSPRPS-ETVTCNVAHPASS-TKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDI  257 (434)
T ss_dssp             EEEEEETTTTTS-SCCEEEEECTTTT-CCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCC
T ss_pred             EEEEEcchhcCC-CcEEEEEEeCCCC-ccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEecc
Confidence            459999999999 9999999998876 23333332221            144433332222  7789999999999987


Q ss_pred             C----CCeEEEEECCEEeccCCcEEE--EecC---ceeEEEEccCCCCCCeEEEEEEEeCCceeE--EEEEEE-ecCCCC
Q psy12131         77 P----PAKVEWFRDGTAITLGGRIDM--HVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQ--QFIQLS-GIPNIP  144 (245)
Q Consensus        77 ~----~~~~~w~~~~~~~~~~~~~~~--~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~--~~~~~~-~~~~~p  144 (245)
                      +    .+.+.|++++..+........  ...+   ..+.|.|..+..+|.|.|.|.+.|..|...  ..+.+. ....+|
T Consensus       258 ~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P  337 (434)
T 1igy_B          258 SKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAP  337 (434)
T ss_dssp             CSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCC
T ss_pred             ccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCC
Confidence            4    358999998876543211110  0111   234689999999999999999999887542  233221 122344


Q ss_pred             ccccC---ccccCCCeeEEEEEeCCCCCceEEEEEEEeec
Q psy12131        145 VFQKS---SRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE  181 (245)
Q Consensus       145 ~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  181 (245)
                      .+...   .....+..+.|.|.+.+..|..--..|+++..
T Consensus       338 ~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~  377 (434)
T 1igy_B          338 QVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQ  377 (434)
T ss_dssp             CCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTS
T ss_pred             EEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCE
Confidence            33221   11235667999999966433211233555543

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.67  E-value=7.5e-16  Score=112.06  Aligned_cols=114  Identities=16%  Similarity=0.207  Sum_probs=83.7

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCC----CceeeEEEEEEec---CCeEEeecceEEecCCCeEEEEEEEeecCCCeEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIG----ESTSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVE   82 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~   82 (245)
                      ...|.|.+++.+|+|.|+|.+.+...    ...+..+.|.|..   +|.+...+. ..+.+|++++|.|.+.+. .+.+.
T Consensus        61 ~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~~~  138 (257)
T 1b6u_A           61 KANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDMYH  138 (257)
T ss_dssp             EEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSC-CSEEE
T ss_pred             eEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCC-CcEEE
Confidence            45699999999999999999986431    2246778888874   466655554 357899999999998765 47899


Q ss_pred             EEECCEEeccCCcEEEEe-cCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         83 WFRDGTAITLGGRIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        83 w~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      |++++..+.......... ......|.|.++.  |.|.|+|.+.+.
T Consensus       139 w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~  182 (257)
T 1b6u_A          139 LSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFR  182 (257)
T ss_dssp             EEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECS
T ss_pred             EEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcC
Confidence            999987655432211111 1135689999998  999999999975

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.67  E-value=7.5e-16  Score=113.81  Aligned_cols=126  Identities=16%  Similarity=0.314  Sum_probs=91.5

Q ss_pred             cceEEEeec----ceEEEeccCCCCCEEEEEEEEcC--------CCCceeeEEEEEEec---------------CCeEEe
Q psy12131          2 KEIELLYNR----ESLDLDRVTLKLAGLYQCIASNN--------IGESTSKNFIVNVIY---------------PPEVSV   54 (245)
Q Consensus         2 ~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~--------~~~~~~~~~~l~v~~---------------~p~~~~   54 (245)
                      +|+.+..+.    .+|.|.+++.+|+|.|+|.+.+.        ..........|.|..               +|.+..
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~  145 (280)
T 3fku_X           66 GRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQ  145 (280)
T ss_dssp             TTCEEEEETTTTEEEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBC
T ss_pred             CcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEe
Confidence            466666443    46999999999999999999986        111123345667766               455555


Q ss_pred             ecceEEecCCCeEEEEEEEee-cC-CCeEEEEEC--CEEec------------cCCcEEEEecCceeEEEEccCCCCCCe
Q psy12131         55 EKQWIHTAPDMRAEIICNVYA-NP-PAKVEWFRD--GTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        55 ~~~~~~~~~g~~~~l~C~~~~-~~-~~~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g  118 (245)
                      .+. ..+.+|+++.|.|.+.+ .+ .+.+.|++.  +....            ...++.....+....|.|.+++.+|.|
T Consensus       146 ~p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG  224 (280)
T 3fku_X          146 PPS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEA  224 (280)
T ss_dssp             CSE-EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCS
T ss_pred             CCc-EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCE
Confidence            555 78899999999999987 43 378999872  22111            124555555556678999999999999


Q ss_pred             EEEEEEEeCC
Q psy12131        119 NYMCQASNNL  128 (245)
Q Consensus       119 ~y~C~~~n~~  128 (245)
                      .|.|.+.+..
T Consensus       225 ~Y~C~~~~~~  234 (280)
T 3fku_X          225 DYYCSTWDSS  234 (280)
T ss_dssp             EEEEEEEETT
T ss_pred             EEEEEEecCC
Confidence            9999999875

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.67  E-value=2.3e-14  Score=114.61  Aligned_cols=173  Identities=9%  Similarity=-0.007  Sum_probs=92.4

Q ss_pred             EecCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcE--EEE-ecC---ceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131         60 HTAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRI--DMH-VSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~--~~~-~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  131 (245)
                      .+..|+.+.|.|.+.|..++  .+.|++++..+......  ... .++   ..+.|.|......|.|.|+|.+.|..+..
T Consensus       308 ~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~  387 (512)
T 1zvo_C          308 DLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPP  387 (512)
T ss_pred             HhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCC
Confidence            34579999999999886443  89999999875521110  011 111   12468898888889999999999987654


Q ss_pred             E-EEEEEEe-c--CCCCccccCccccCCCeeE-EEEEeCCCCCceEEEEEEEeec--CCCCeEE--EeeCCCCCCCccee
Q psy12131        132 Q-QFIQLSG-I--PNIPVFQKSSRRLGPDGYR-LVWQVDTYSGIIQYLLKFRERE--ELTPWRN--IVIPSDGSLAGPIY  202 (245)
Q Consensus       132 ~-~~~~~~~-~--~~~p~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~  202 (245)
                      . ..+.... .  +.+|..........+..+. |.|.+.+..|......|+++..  .......  .......  ..-..
T Consensus       388 ~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg--~~~~~  465 (512)
T 1zvo_C          388 QRLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGS--TTFWA  465 (512)
T ss_pred             CceeEEeecCCCCCCCCEEEEEccCcCCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCC--CEEEE
Confidence            2 2222211 1  2334332221112577889 9999976433322233555533  1111110  0011110  00011


Q ss_pred             eeEEEecCCCCCceEEEEEEEEecCCCCCCCc
Q psy12131        203 TQSYNITGLQLFTQYEASVLAKNRFGWSRPSK  234 (245)
Q Consensus       203 ~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~  234 (245)
                      ...+.+......+...|.|.|.|.........
T Consensus       466 ~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~  497 (512)
T 1zvo_C          466 WSVLRVPAPPSPQPATYTCVVSHEDSRTLLNA  497 (512)
T ss_pred             EEEEEECchhcCCCCeEEEEEEecCCCCceEE
Confidence            13345554443334455556999876654433

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.66  E-value=1.8e-16  Score=111.20  Aligned_cols=172  Identities=17%  Similarity=0.135  Sum_probs=112.0

Q ss_pred             ecceEEecCCCeEEEEEE-EeecCC-CeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeE
Q psy12131         55 EKQWIHTAPDMRAEIICN-VYANPP-AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ  132 (245)
Q Consensus        55 ~~~~~~~~~g~~~~l~C~-~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  132 (245)
                      .+..+.+.+|+.+.|.|. +.+.|. +.+.|++++..+................|.|.++..+|.|.|+|.+.|..+...
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~   93 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKS   93 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEE
T ss_pred             CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcc
Confidence            345677889999999999 888888 999999988766422211112222345799999999999999999999765443


Q ss_pred             E---EEEEEecC------CCCcccc---CccccCCCeeEEEEEeCCCCCceEEEEEEEeec-CCCCeEEEeeCCCCCCCc
Q psy12131        133 Q---FIQLSGIP------NIPVFQK---SSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE-ELTPWRNIVIPSDGSLAG  199 (245)
Q Consensus       133 ~---~~~~~~~~------~~p~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  199 (245)
                      .   .+.+.+.+      .+|.+..   ......+..+.|.|.+.+.++. .+ .|+++.. ..... ... ...     
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~v-~W~~~~~~~~~~~-~~~-~~~-----  164 (201)
T 3s97_C           94 VFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVP-DI-RWRKVLEPMPSTA-EIS-TSG-----  164 (201)
T ss_dssp             EECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCC-EE-EEEETTBCCCTTC-EEE-TTT-----
T ss_pred             hhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCC-ce-EEEeCCCcCCCce-eec-CCC-----
Confidence            3   22322221      1222221   2234678899999999665433 22 3444433 11111 111 111     


Q ss_pred             ceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEe
Q psy12131        200 PIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       200 ~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~  239 (245)
                          ..+.|.++...+.+.|+|.|.|..|....+..+.++
T Consensus       165 ----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          165 ----AVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             ----TEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ----CEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence                468899999999999999999999987665555543

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.66  E-value=8.2e-16  Score=111.56  Aligned_cols=170  Identities=11%  Similarity=0.108  Sum_probs=105.4

Q ss_pred             cceEEecCCCeEEEEEEEee---cCCCeEEEEECCEEec------------------------------cCCcEEEEecC
Q psy12131         56 KQWIHTAPDMRAEIICNVYA---NPPAKVEWFRDGTAIT------------------------------LGGRIDMHVSS  102 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~---~~~~~~~w~~~~~~~~------------------------------~~~~~~~~~~~  102 (245)
                      +..+.+.+|+.+.|.|.+.+   .+.+.+.|++++....                              ...+..+.. .
T Consensus         9 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~   87 (250)
T 2fbo_J            9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN-L   87 (250)
T ss_dssp             CSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC-T
T ss_pred             CCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc-C
Confidence            44677889999999999998   7788999999764310                              011111111 1


Q ss_pred             ceeEEEEccCCCCCCeEEEEEEEeCCcee-----EEEEEEEecCC--CCccccC----ccccCCCeeEEEEEeCCCCCce
Q psy12131        103 EKHSLLVRHIKDTDFGNYMCQASNNLGSS-----QQFIQLSGIPN--IPVFQKS----SRRLGPDGYRLVWQVDTYSGII  171 (245)
Q Consensus       103 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-----~~~~~~~~~~~--~p~~~~~----~~~~~~~~~~l~~~~~~~~~~~  171 (245)
                      ....|.|.++..+|.|.|.|.+.|..+..     ...+.|.+...  +|.....    .....+..+.|.|.+.+.++. 
T Consensus        88 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p-  166 (250)
T 2fbo_J           88 AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANA-  166 (250)
T ss_dssp             TSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTC-
T ss_pred             CcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCC-
Confidence            23479999999999999999999977643     34566665432  3333221    223468899999999775433 


Q ss_pred             EEEEEEEeecCCCCe------EEEe---------eCCC-CCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        172 QYLLKFREREELTPW------RNIV---------IPSD-GSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       172 ~~~~~~~~~~~~~~~------~~~~---------~~~~-~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      .+ .|+++.. ...+      ..+.         .... ...........+.|.++...+.+.|.|.|.|.+|.
T Consensus       167 ~v-~W~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  238 (250)
T 2fbo_J          167 NV-TWYTGPT-FFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE  238 (250)
T ss_dssp             EE-EEEEEEE-CSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSG
T ss_pred             ee-EEEeCCC-cccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccc
Confidence            23 3555543 1111      0000         0000 00000001157899999999999999999997763

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.66  E-value=9.8e-15  Score=104.82  Aligned_cols=138  Identities=14%  Similarity=0.211  Sum_probs=87.4

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEc--CCCC---ceeeEEEEEEec----CCeEEeecceEEecCC-CeE
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASN--NIGE---STSKNFIVNVIY----PPEVSVEKQWIHTAPD-MRA   67 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~--~~~~---~~~~~~~l~v~~----~p~~~~~~~~~~~~~g-~~~   67 (245)
                      +|+.+..+    ..+|+|.+++.+|+|.|+|.+.+  ..+.   .......|.|..    +|.+........+..| +.+
T Consensus        65 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v  144 (232)
T 1dn0_B           65 SRVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSV  144 (232)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSE
T ss_pred             CeEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcE
Confidence            57777643    23799999999999999999984  2111   122345778865    3555432222234467 999


Q ss_pred             EEEEEEeec-CCC-eEEEEE-CCEEeccCCcE-EEEecC---ceeEEEEccCCC--CCCeEEEEEEEeCCceeEEEEEEE
Q psy12131         68 EIICNVYAN-PPA-KVEWFR-DGTAITLGGRI-DMHVSS---EKHSLLVRHIKD--TDFGNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus        68 ~l~C~~~~~-~~~-~~~w~~-~~~~~~~~~~~-~~~~~~---~~~~l~i~~~~~--~d~g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      .|.|.+.+. |.+ .+.|++ ++..+.....+ .....+   ..+.|.|.....  .|.|.|+|.+.|..+.......+.
T Consensus       145 ~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~  224 (232)
T 1dn0_B          145 AVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLP  224 (232)
T ss_dssp             EEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECC
T ss_pred             EEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecC
Confidence            999999886 776 999999 88776430000 000111   134688888776  689999999999988766655544


Q ss_pred             e
Q psy12131        139 G  139 (245)
Q Consensus       139 ~  139 (245)
                      +
T Consensus       225 ~  225 (232)
T 1dn0_B          225 V  225 (232)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.66  E-value=4.6e-15  Score=105.75  Aligned_cols=123  Identities=17%  Similarity=0.258  Sum_probs=86.9

Q ss_pred             cceEEEeec----ceEEEeccCCCCCEEEEEEEEcCCC-CceeeEEEEEEe----cCCeEEe-ecceEEecCCCeEEEEE
Q psy12131          2 KEIELLYNR----ESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVI----YPPEVSV-EKQWIHTAPDMRAEIIC   71 (245)
Q Consensus         2 ~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~----~~p~~~~-~~~~~~~~~g~~~~l~C   71 (245)
                      +|+++..+.    .+|.|.+++.+|+|.|+|.+.+... ........|.|.    .+|.+.. .+...  ..|+.+.|.|
T Consensus        68 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C  145 (221)
T 3m8o_H           68 GRLTISRDDSKNTAFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIAC  145 (221)
T ss_dssp             TSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEE
T ss_pred             ccEEEEecCCCCEEEEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEE
Confidence            577776543    3699999999999999999998641 223344566775    2455542 22222  6899999999


Q ss_pred             EEee-cCC--CeEEEEECCEEec----------cCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131         72 NVYA-NPP--AKVEWFRDGTAIT----------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus        72 ~~~~-~~~--~~~~w~~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  131 (245)
                      .+.+ .|.  +.+.|++++..+.          .+..+.+     .+.|.|......|.|.|+|.+.+..+..
T Consensus       146 ~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          146 LVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTT-----SSQLTLPATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             EEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEE-----EEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred             EEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEE-----EEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence            9998 665  3899999886552          1222222     2368899888889999999999987654

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.66  E-value=5.9e-15  Score=91.43  Aligned_cols=93  Identities=20%  Similarity=0.276  Sum_probs=78.4

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEE-ecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      .+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+. .......|.|.++..+|.|.|+|.+.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   83 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence            3677777777788899999999999999999999999999988876665543 345567899999999999999999999


Q ss_pred             CCceeEEEEEEEec
Q psy12131        127 NLGSSQQFIQLSGI  140 (245)
Q Consensus       127 ~~g~~~~~~~~~~~  140 (245)
                      ..|.....+.|.+.
T Consensus        84 ~~g~~~~~~~l~V~   97 (99)
T 1g1c_A           84 IAGETSSHAFLLVQ   97 (99)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEEEe
Confidence            99988887777654

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.66  E-value=7.9e-16  Score=110.05  Aligned_cols=129  Identities=13%  Similarity=0.156  Sum_probs=86.8

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCC-----C--ceeeEEEEEEec----CCeEEeecceEEecCCCe
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIG-----E--STSKNFIVNVIY----PPEVSVEKQWIHTAPDMR   66 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~-----~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~   66 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|+|.+.+..|     .  .....+.|.|..    +|.+........+..|+.
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~  145 (225)
T 1op3_H           66 GRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGT  145 (225)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCE
T ss_pred             CceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCc
Confidence            46777643    35799999999999999999998764     1  112345777774    355543322223467999


Q ss_pred             EEEEEEEeec-CCC-eEEEEECCEEeccC-CcEEEEecC---ceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131         67 AEIICNVYAN-PPA-KVEWFRDGTAITLG-GRIDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus        67 ~~l~C~~~~~-~~~-~~~w~~~~~~~~~~-~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  131 (245)
                      +.|.|.+.+. |.| .+.|++++..+... ........+   ..+.|.|......| |.|+|.+.|..+..
T Consensus       146 v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  215 (225)
T 1op3_H          146 AALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  215 (225)
T ss_dssp             EEEEEEEEEEBSSCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTE
T ss_pred             EEEEEEEEeEECCCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCc
Confidence            9999999986 766 99999988653210 000011111   13468898888778 99999999976543

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.66  E-value=3.5e-15  Score=109.51  Aligned_cols=126  Identities=15%  Similarity=0.222  Sum_probs=84.5

Q ss_pred             cceEEEee--cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCe-----------------------EEeec
Q psy12131          2 KEIELLYN--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE-----------------------VSVEK   56 (245)
Q Consensus         2 ~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-----------------------~~~~~   56 (245)
                      +|+.+...  ..+|+|.+++.+|+|.|+|.+.+..+........|.|..++.                       ....+
T Consensus        79 ~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~  158 (268)
T 1x9q_A           79 DRFSGSGSGTDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDET  158 (268)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEE
T ss_pred             ccEEEEcCCCEEEEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECC
Confidence            46666543  346999999999999999999987543222345566654321                       11223


Q ss_pred             ceEEecCCCeEEEEEEEeecCC--CeEEEEEC--CEEe-------------------ccCCcEEEEec--CceeEEEEcc
Q psy12131         57 QWIHTAPDMRAEIICNVYANPP--AKVEWFRD--GTAI-------------------TLGGRIDMHVS--SEKHSLLVRH  111 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~~--~~~~w~~~--~~~~-------------------~~~~~~~~~~~--~~~~~l~i~~  111 (245)
                      ....+.+|+.+.|.|.+.+.+.  +.+.|++.  +...                   ....++.+...  .....|.|.+
T Consensus       159 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~  238 (268)
T 1x9q_A          159 GGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNN  238 (268)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             CceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECC
Confidence            4567889999999999988764  78999974  2211                   01234554432  2356899999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy12131        112 IKDTDFGNYMCQASNN  127 (245)
Q Consensus       112 ~~~~d~g~y~C~~~n~  127 (245)
                      ++.+|.|.|.|.+.+.
T Consensus       239 v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          239 LRVEDTGIYYCTGASY  254 (268)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             CCHHHCEEEEEEEccC
Confidence            9999999999999874

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.66  E-value=6.8e-15  Score=107.73  Aligned_cols=126  Identities=15%  Similarity=0.176  Sum_probs=88.3

Q ss_pred             cceEEEee--cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCC------------------eEE-eecceEE
Q psy12131          2 KEIELLYN--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP------------------EVS-VEKQWIH   60 (245)
Q Consensus         2 ~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p------------------~~~-~~~~~~~   60 (245)
                      +|+.+..+  ..+|.|.+++.+|+|.|+|.+.+..+......+.|.|..+|                  .+. ..+....
T Consensus        70 ~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (264)
T 2gjj_A           70 DRFTGSGSGTDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEV  149 (264)
T ss_dssp             TTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEE
T ss_pred             ccEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEE
Confidence            45666543  34799999999999999999998754322334567777653                  221 2223346


Q ss_pred             ecCCCeEEEEEEEeecCC--CeEEEEECC--E---Eec--------------cCCcEEEEe--cCceeEEEEccCCCCCC
Q psy12131         61 TAPDMRAEIICNVYANPP--AKVEWFRDG--T---AIT--------------LGGRIDMHV--SSEKHSLLVRHIKDTDF  117 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~~~~--~~~~w~~~~--~---~~~--------------~~~~~~~~~--~~~~~~l~i~~~~~~d~  117 (245)
                      +.+|+.+.|.|.+.+.+.  +.+.|++..  .   .+.              ...++.+..  ......|.|.+++.+|.
T Consensus       150 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~Ds  229 (264)
T 2gjj_A          150 VKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDS  229 (264)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccC
Confidence            889999999999998764  799999852  1   111              023444332  23467899999999999


Q ss_pred             eEEEEEEEeC
Q psy12131        118 GNYMCQASNN  127 (245)
Q Consensus       118 g~y~C~~~n~  127 (245)
                      |.|.|.+.|.
T Consensus       230 G~Y~C~a~n~  239 (264)
T 2gjj_A          230 ADYYCVRSGN  239 (264)
T ss_dssp             EEEEEEEECS
T ss_pred             EEEEEEEecC
Confidence            9999999995

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.66  E-value=3.6e-15  Score=105.68  Aligned_cols=182  Identities=12%  Similarity=-0.016  Sum_probs=109.2

Q ss_pred             cceEEecCC--CeEEEEEEEeecCCCeEEEEEC---CEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         56 KQWIHTAPD--MRAEIICNVYANPPAKVEWFRD---GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        56 ~~~~~~~~g--~~~~l~C~~~~~~~~~~~w~~~---~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      +..+.+.+|  +.+.|.|.+.+ |.+.+.|++.   +..+.....+....   ...|.|.++..+|.|.|.|.+.|..+.
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~---~~~l~I~~v~~~D~G~Y~C~a~n~~~~   89 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDS---KKGFTIPSYMISYAGMVFCEAKINDES   89 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEET---TTEEEEEGGGTTTCSEEEEEEC----C
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccC---CccEEEccCChhcCceEEEEEEECCee
Confidence            356778899  99999999976 7789999874   66655544433322   236999999999999999999985443


Q ss_pred             eEE-EEEEEecC-CCCcccc-C--c-cccCCCeeEEEEEeCCCC-CceEEEEEEEeecCCCCeEE-E-eeCCCCCCCcce
Q psy12131        131 SQQ-FIQLSGIP-NIPVFQK-S--S-RRLGPDGYRLVWQVDTYS-GIIQYLLKFREREELTPWRN-I-VIPSDGSLAGPI  201 (245)
Q Consensus       131 ~~~-~~~~~~~~-~~p~~~~-~--~-~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~  201 (245)
                      ... .+.+.+.. .+|.+.. .  . ....|+.+.|.|.+.+.+ +...+ .|+++......... . ............
T Consensus        90 ~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i-~W~~~g~~~~~~~~~~~~~~~~~~~~~~~  168 (213)
T 2x1w_L           90 YQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF-NWEYPSSKHQHKKLVNRDLKTQSGSEMKK  168 (213)
T ss_dssp             EECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEE-EEECSCSSCCSEEEEEEEECCCSSCSCEE
T ss_pred             EEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEE-EEEecCCccceEEEeccccccccCcccee
Confidence            322 24444432 2222111 1  1 457899999999996543 22122 23443321111111 0 111000000012


Q ss_pred             eeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCC
Q psy12131        202 YTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEG  242 (245)
Q Consensus       202 ~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~  242 (245)
                      ....|.|.++...+.+.|.|.|.|..|....+..+.+...+
T Consensus       169 ~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p  209 (213)
T 2x1w_L          169 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDP  209 (213)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC--
T ss_pred             eeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccc
Confidence            23579999999999999999999999987666666665443

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.65  E-value=2.2e-15  Score=93.61  Aligned_cols=94  Identities=20%  Similarity=0.343  Sum_probs=77.4

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEE-EEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRID-MHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      .+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....... .........|.|.++...|.|.|.|.+.|
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN   83 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence            46677666777888999999999999999999999999998887654332 33344456899999999999999999999


Q ss_pred             CCceeEEEEEEEecC
Q psy12131        127 NLGSSQQFIQLSGIP  141 (245)
Q Consensus       127 ~~g~~~~~~~~~~~~  141 (245)
                      ..|.....+.|.+..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (100)
T 2kdg_A           84 RAGEATFTVQLDVLA   98 (100)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCeEEEEEEEEEEe
Confidence            999988888877653

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.65  E-value=2.8e-15  Score=91.76  Aligned_cols=89  Identities=17%  Similarity=0.290  Sum_probs=74.3

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECC--EEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDG--TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      +|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++  ..+....  .+........|.|.++..+|.|.|+|.|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   79 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPEL--LVDAKSSTTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTS--EEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcE--EEEecCCEEEEEECCCChhcCEEEEEEEEc
Confidence            577766677788999999999999999999999999999  7765543  223334567899999999999999999999


Q ss_pred             CCceeEEEEEEEe
Q psy12131        127 NLGSSQQFIQLSG  139 (245)
Q Consensus       127 ~~g~~~~~~~~~~  139 (245)
                      ..|.....+.|.+
T Consensus        80 ~~G~~~~~~~l~V   92 (93)
T 1wit_A           80 ELGEDEAIFEVIV   92 (93)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEE
Confidence            9998888877765

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.64  E-value=4.3e-15  Score=108.12  Aligned_cols=132  Identities=13%  Similarity=0.134  Sum_probs=89.2

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCC---CceeeEEEEEEe----cCCeEEeecceEEecCCCeEEEE
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIG---ESTSKNFIVNVI----YPPEVSVEKQWIHTAPDMRAEII   70 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~   70 (245)
                      +|+.+..+    ..+|+|.+++.+|+|.|+|.+.+...   ........|.|.    .+|.+........+..|+.+.|.
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~  145 (253)
T 3liz_H           66 GRFTISRDNAKNTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLG  145 (253)
T ss_dssp             TTCEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEE
T ss_pred             CcEEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEE
Confidence            56666643    24499999999999999999987521   112334567776    46666544444445679999999


Q ss_pred             EEEee-cCCC-eEEEEECCEEec--------cCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131         71 CNVYA-NPPA-KVEWFRDGTAIT--------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus        71 C~~~~-~~~~-~~~w~~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      |.+.+ .|.+ .+.|++++..+.        ....+.+     .+.|.|......| |.|+|.+.|..+.......+..
T Consensus       146 C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~-----~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~  218 (253)
T 3liz_H          146 CLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTL-----SSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVP  218 (253)
T ss_dssp             EEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEE-----EEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEeeEeCCCeEEEEEeCCeecceEeCCccccCCeEEE-----EEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecC
Confidence            99988 6666 899999876321        1122221     2578899998888 9999999999876666555543

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.64  E-value=1.7e-13  Score=100.99  Aligned_cols=179  Identities=12%  Similarity=0.102  Sum_probs=110.0

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCE-----Eec---------cCCcEEEEecCceeEEEEccCCC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGT-----AIT---------LGGRIDMHVSSEKHSLLVRHIKD  114 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~-----~~~---------~~~~~~~~~~~~~~~l~i~~~~~  114 (245)
                      .+.+...+..+.+.+|+.+.|.|.+.+.|.+.+.|+++..     .+.         ...++.+...+....|.|.+++.
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            3445556667888999999999999988889999998431     121         13456655555567899999999


Q ss_pred             CCCeEEEEEEEeCCce-eEEEEEEEecCC-------------CCccc---cCccccCCCeeEEEEEeCCCCCceEEEEEE
Q psy12131        115 TDFGNYMCQASNNLGS-SQQFIQLSGIPN-------------IPVFQ---KSSRRLGPDGYRLVWQVDTYSGIIQYLLKF  177 (245)
Q Consensus       115 ~d~g~y~C~~~n~~g~-~~~~~~~~~~~~-------------~p~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  177 (245)
                      +|.|.|.|.+.|..+. ......|.+...             |+...   .......++.+.|.|...+.++......|+
T Consensus        92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~  171 (276)
T 3auv_A           92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWV  171 (276)
T ss_dssp             GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEE
T ss_pred             hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEE
Confidence            9999999999997543 112223333322             11111   123456789999999996654322234466


Q ss_pred             Eeec-CCCCeEEEee---------CCCCCCCc-----ceeeeEEEecCCCCCceEEEEEEEEecC
Q psy12131        178 RERE-ELTPWRNIVI---------PSDGSLAG-----PIYTQSYNITGLQLFTQYEASVLAKNRF  227 (245)
Q Consensus       178 ~~~~-~~~~~~~~~~---------~~~~~~~~-----~~~~~~~~i~~l~~~~~y~~~v~a~N~~  227 (245)
                      ++.. ....+.....         ........     ......+.|.++...+.+.|.|.|.|..
T Consensus       172 k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~  236 (276)
T 3auv_A          172 RQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFF  236 (276)
T ss_dssp             EECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             EcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCc
Confidence            6532 0111100000         00000000     0112479999999999999999999984

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.64  E-value=1.9e-15  Score=119.23  Aligned_cols=153  Identities=16%  Similarity=0.174  Sum_probs=90.7

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe-----------------cCCeE-EeecceEE-ecCCCeEEEEEE
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-----------------YPPEV-SVEKQWIH-TAPDMRAEIICN   72 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~-----------------~~p~~-~~~~~~~~-~~~g~~~~l~C~   72 (245)
                      .|.|.+++.+| |.|+|.|.|..+. ......+.+.                 .+|.+ ...+.... +..|+.+.|.|.
T Consensus       195 ~L~i~~~~~~d-G~Y~C~a~n~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~  272 (457)
T 1hzh_H          195 VVTVPSSSLGT-QTYICNVNHKPSN-TKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCV  272 (457)
T ss_dssp             EEEECSGGGGT-SCCEEEEEEGGGT-EEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEE
T ss_pred             EEEecccccCC-ceEEEEEEeCCCC-cceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEE
Confidence            69999999999 9999999997655 3333333322                 24554 22222222 567999999999


Q ss_pred             EeecCCC----eEEEEECCEEeccCCcEEEEecCceeEEEEc---cCCCCC---CeEEEEEEEeCCceeEEEEEEEe---
Q psy12131         73 VYANPPA----KVEWFRDGTAITLGGRIDMHVSSEKHSLLVR---HIKDTD---FGNYMCQASNNLGSSQQFIQLSG---  139 (245)
Q Consensus        73 ~~~~~~~----~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d---~g~y~C~~~n~~g~~~~~~~~~~---  139 (245)
                      +.|.+++    .+.|++++..+........... ....+.+.   .+...|   .|.|+|.|.|..+.......+..   
T Consensus       273 ~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~-~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~  351 (457)
T 1hzh_H          273 VVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQ-YNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKG  351 (457)
T ss_dssp             EECCCTTCCCCEEEEEETTEEECCCEEEEEEEC-TTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCC
T ss_pred             EEcccCCCCceEEEEEeCCccccccccccceec-CCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccC
Confidence            9987653    9999999987754322111111 11122222   133445   99999999987654433333322   


Q ss_pred             cCCCCccccC---ccccCCCeeEEEEEeCCC
Q psy12131        140 IPNIPVFQKS---SRRLGPDGYRLVWQVDTY  167 (245)
Q Consensus       140 ~~~~p~~~~~---~~~~~~~~~~l~~~~~~~  167 (245)
                      ...+|.+...   .....+..+.|.|.+.+.
T Consensus       352 ~~~~P~v~~~~~~~~~~~~~~~~l~C~~~g~  382 (457)
T 1hzh_H          352 QPREPQVYTLPPSRDELTKNQVSLTCLVKGF  382 (457)
T ss_dssp             CCBCCEEEEECCCGGGGGSSEEEEEEEEEEE
T ss_pred             CCCCCeEEEECCCccccCCCcEEEEEEEEeE
Confidence            2233433221   111234449999999664

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.64  E-value=7.7e-15  Score=90.91  Aligned_cols=93  Identities=20%  Similarity=0.260  Sum_probs=77.5

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCC-cEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG-RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      .+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+.... ++.....+....|.|.++..+|.|.|.|.+.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   83 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence            36677777777788999999999999999999999999998876553 44444555566899999999999999999999


Q ss_pred             CCceeEEEEEEEec
Q psy12131        127 NLGSSQQFIQLSGI  140 (245)
Q Consensus       127 ~~g~~~~~~~~~~~  140 (245)
                      ..|.....+.|.+.
T Consensus        84 ~~g~~~~~~~l~V~   97 (99)
T 1u2h_A           84 EYGARQCEARLEVR   97 (99)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCceeEEEEEEEE
Confidence            99998887777654

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.64  E-value=2.7e-15  Score=106.29  Aligned_cols=174  Identities=14%  Similarity=0.139  Sum_probs=102.5

Q ss_pred             eEEeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--CEE---ec---------cCCcEEEEecCceeEEEEccCCCCC
Q psy12131         51 EVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GTA---IT---------LGGRIDMHVSSEKHSLLVRHIKDTD  116 (245)
Q Consensus        51 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~~---~~---------~~~~~~~~~~~~~~~l~i~~~~~~d  116 (245)
                      .+..++ .+.+.+|+.+.|.|.+.+.+.+.+.|++.  +..   +.         ...++.+........|.|.+++.+|
T Consensus         3 ~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   81 (213)
T 3mj8_L            3 TLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGD   81 (213)
T ss_dssp             CBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhh
Confidence            344445 67788999999999999889999999982  211   10         2235555555567789999999999


Q ss_pred             CeEEEEEEEeCCc---eeEEEEEEEec--C-CCCccccC---ccccCCCeeEEEEEeCCC-CCceEEEEEEEeec-CCCC
Q psy12131        117 FGNYMCQASNNLG---SSQQFIQLSGI--P-NIPVFQKS---SRRLGPDGYRLVWQVDTY-SGIIQYLLKFRERE-ELTP  185 (245)
Q Consensus       117 ~g~y~C~~~n~~g---~~~~~~~~~~~--~-~~p~~~~~---~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~~  185 (245)
                      .|.|.|.+.|..+   .....+.|.+.  + .+|.+...   .....++.+.|.|.+.+. ++...+ .|+++.. ....
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v-~W~k~g~~l~~~  160 (213)
T 3mj8_L           82 EADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAV-TWEADGTPITQG  160 (213)
T ss_dssp             CEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEE-EEEETTEEECTT
T ss_pred             CEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEE-EEEcCCcccCCC
Confidence            9999999999887   23333344433  2 34433321   223468999999999653 221222 3454432 0000


Q ss_pred             eEEEe-eCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        186 WRNIV-IPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       186 ~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      ..... .....   .......+.|......+...|+|.|.|..|.
T Consensus       161 ~~~~~~~~~~~---~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3mj8_L          161 VKTTQPSKSDS---KYMATSYLTMTADAWKSRNTFICKVTHGGNT  202 (213)
T ss_dssp             EEECCCEEETT---EEEEEEEEEEESHHHHSCSCEEEEEEETTEE
T ss_pred             cccCCcCccCC---cEEEEEEEEEeHHHcCCCCEEEEEEEECCcc
Confidence            00000 00000   0001134667666544455555669998753

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=5.7e-15  Score=94.58  Aligned_cols=94  Identities=16%  Similarity=0.309  Sum_probs=77.9

Q ss_pred             cCCeEEee---cceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEE
Q psy12131         48 YPPEVSVE---KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA  124 (245)
Q Consensus        48 ~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  124 (245)
                      .+|.+...   +....+..|+.+.|.|.+.|.|.|.+.|++++..+. ..++.+........|.|.++..+|.|.|+|.+
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   98 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSV   98 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEEEEEEE
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEEEEEEE
Confidence            46776542   356778899999999999999999999999999886 34555555666778999999999999999999


Q ss_pred             EeCCceeEEEEEEEecCC
Q psy12131        125 SNNLGSSQQFIQLSGIPN  142 (245)
Q Consensus       125 ~n~~g~~~~~~~~~~~~~  142 (245)
                      .|..|.....+.|.+...
T Consensus        99 ~N~~G~~~~~~~l~V~~~  116 (118)
T 2e7c_A           99 QIENMKDTATIRIRVVEK  116 (118)
T ss_dssp             ECSSCEECCEEEEEEECC
T ss_pred             EeCCCeEEEEEEEEEEcC
Confidence            999998888888777543

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.64  E-value=8.6e-15  Score=103.64  Aligned_cols=176  Identities=14%  Similarity=0.190  Sum_probs=105.6

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEECC--EEe------------ccCCcEEEEecCceeEEEEccCCCCCCe
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDG--TAI------------TLGGRIDMHVSSEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g  118 (245)
                      ...+..+.+.+|+.+.|.|.+.+.|.+.+.|+++.  ...            ....++.+...+....|.|.++..+|.|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   84 (213)
T 3d9a_L            5 TQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG   84 (213)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCE
Confidence            34456778899999999999999888899999742  111            1124555555556679999999999999


Q ss_pred             EEEEEEEeCCceeE---EEEEEEecCCCCccccC---ccccCCCeeEEEEEeCC-CCCceEEEEEEEeec-CCCC-eEEE
Q psy12131        119 NYMCQASNNLGSSQ---QFIQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDT-YSGIIQYLLKFRERE-ELTP-WRNI  189 (245)
Q Consensus       119 ~y~C~~~n~~g~~~---~~~~~~~~~~~p~~~~~---~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~-~~~~-~~~~  189 (245)
                      .|.|.+.|..+...   ..+.+...+.+|.+...   .....+..+.|.|.+.+ .++... ..|+++.. .... ....
T Consensus        85 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~-v~W~k~g~~~~~~~~~~~  163 (213)
T 3d9a_L           85 MYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDIN-VKWKIDGSERQNGVLNSW  163 (213)
T ss_dssp             EEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCE-EEEEETTEEECTTEEEEE
T ss_pred             EEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceE-EEEEcCCCcCcceeeecC
Confidence            99999999876422   13344333334443321   12345779999999965 333222 23555433 1111 1111


Q ss_pred             eeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        190 VIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      ....... ..-.....+.|..+...+...|.|.|.|.....
T Consensus       164 ~~~~~~~-~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  203 (213)
T 3d9a_L          164 TDQDSKD-STYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  203 (213)
T ss_dssp             CCCCTTT-CCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             CCccCCC-CCEEEEEEEEEeccccCCCCEEEEEEEEccCCC
Confidence            1110100 000112367777777666667777799987554

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.64  E-value=3.3e-15  Score=103.41  Aligned_cols=164  Identities=11%  Similarity=0.100  Sum_probs=110.1

Q ss_pred             eEEecCCCeEEEEEEEeecCCCeEEEEECCEE--ecc------------CCcEEEEe---cCceeEEEEccCCCCCCeEE
Q psy12131         58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTA--ITL------------GGRIDMHV---SSEKHSLLVRHIKDTDFGNY  120 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~--~~~------------~~~~~~~~---~~~~~~l~i~~~~~~d~g~y  120 (245)
                      .+.+.+|+.+.|.|.+.+.|.+.+.|++++..  +..            ..++....   ......|.|.++..+|.|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            45678999999999999888899999998752  211            11222211   12245699999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEecCCCCccccCccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcc
Q psy12131        121 MCQASNNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGP  200 (245)
Q Consensus       121 ~C~~~n~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (245)
                      .|.+.|..+..  .+.+...+.++    ......++.+.|.|.+.++++ ..+. |+++.   ....   .         
T Consensus        84 ~C~~~~~~~~~--~l~V~~~~~~~----~~~v~~g~~~~l~C~~~~~p~-~~v~-W~~~~---~~~~---~---------  140 (184)
T 2ny1_B           84 ICEVEDQKEEV--QLLVFGLTANS----DTHLLQGQSLTLTLESPPGSS-PSVQ-CRSPR---GKNI---Q---------  140 (184)
T ss_dssp             EEEETTEEEEE--EEEEEEEEESS----CSEEETTCCEEEEEECCTTCC-CEEE-EECTT---SCEE---E---------
T ss_pred             EEEEEcCCCcE--EEEEEEecCCC----CceeecCCCEEEEEEcCCCCC-CEEE-EEeCC---Cccc---c---------
Confidence            99999876533  33333222122    123477889999999966533 2332 44332   1111   0         


Q ss_pred             eeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCCCCC
Q psy12131        201 IYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGAET  245 (245)
Q Consensus       201 ~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~~~~  245 (245)
                       ....+.|.++...+.+.|+|.|.|..|....+..+.+...+.++
T Consensus       141 -~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~  184 (184)
T 2ny1_B          141 -GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS  184 (184)
T ss_dssp             -ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC--
T ss_pred             -CceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCCCC
Confidence             11568899999999999999999999887777778877776653

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.64  E-value=8.1e-16  Score=108.26  Aligned_cols=121  Identities=16%  Similarity=0.249  Sum_probs=82.9

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec-------------------------------CCeEEeecc
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY-------------------------------PPEVSVEKQ   57 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~-------------------------------~p~~~~~~~   57 (245)
                      .+.+|.|.+++.+|+|.|+|.+.+..    +..+.|.+..                               +|.+...+.
T Consensus        47 ~~~~L~i~~v~~~DsG~Y~C~~~~~~----s~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  122 (204)
T 1sy6_A           47 DKKKWNLGSNAKDPRGMYQCKGSQNK----SKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY  122 (204)
T ss_dssp             SCCCEEEEEGGGCCEEEEEEESSSSC----CCCEEEEEEC------------------------------------CCCC
T ss_pred             CCCeEEeCCCCcCCCEEEEEEecCCC----CeeEEEEEEEeccccccccccccccccccccccccccccccccceecCCc
Confidence            34569999999999999999975532    2334455440                               122221222


Q ss_pred             eEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCC--cEEEEecCceeEEEEccC-CCCCCeEEEEEEEeCCcee-EE
Q psy12131         58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHI-KDTDFGNYMCQASNNLGSS-QQ  133 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~n~~g~~-~~  133 (245)
                       ....+|+.+.|.|.  +.|.|.+.|++++..+....  ......   ...|.|.++ ..+|.|.|+|.|.|..|.. ..
T Consensus       123 -~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~---~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~  196 (204)
T 1sy6_A          123 -KVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSD---EDHLSLKEFSELEQSGYYVCYPRGSKPEDANF  196 (204)
T ss_dssp             -EEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEEE---TTEEEETTCCHHHHCEEEEEEETTSCGGGSSC
T ss_pred             -eeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEecC---CCEEEEeeCCccccCEEEEEEeccCCCCceeE
Confidence             22238999999999  78889999999998876432  111111   347999999 9999999999999999863 44


Q ss_pred             EEEEEe
Q psy12131        134 FIQLSG  139 (245)
Q Consensus       134 ~~~~~~  139 (245)
                      .+.|.+
T Consensus       197 ~l~l~~  202 (204)
T 1sy6_A          197 YLYLRA  202 (204)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555543

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.64  E-value=4.3e-14  Score=102.15  Aligned_cols=176  Identities=14%  Similarity=0.101  Sum_probs=106.8

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCCCeEEEEECC--E---Eec---------cCCcEEEEecCceeEEEEccCCCCCC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDG--T---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDF  117 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~  117 (245)
                      +...+..+.+.+|+.+.|.|.+.+.+.+.+.|++..  .   .+.         ...++.+...+....|.|.++..+|.
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (242)
T 2znx_A            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (242)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHC
Confidence            445566778899999999999998888999999842  1   111         13456555455567899999999999


Q ss_pred             eEEEEEEEeCCcee-EEEEEEEecCCC------------Ccc-c--cCccccCCCeeEEEEEeCCCCCceEEEEEEEeec
Q psy12131        118 GNYMCQASNNLGSS-QQFIQLSGIPNI------------PVF-Q--KSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE  181 (245)
Q Consensus       118 g~y~C~~~n~~g~~-~~~~~~~~~~~~------------p~~-~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  181 (245)
                      |.|.|.+.|..+.. .....|.+...+            +.. .  .......++.+.|.|.+.+.+....+..|++...
T Consensus        84 G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~  163 (242)
T 2znx_A           84 GMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFP  163 (242)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECT
T ss_pred             EEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCC
Confidence            99999999975421 112233332211            111 1  1123577899999999965532112344666532


Q ss_pred             -CCCCeEEEeeCCC--------CCCCc-----ceeeeEEEecCCCCCceEEEEEEEEecC
Q psy12131        182 -ELTPWRNIVIPSD--------GSLAG-----PIYTQSYNITGLQLFTQYEASVLAKNRF  227 (245)
Q Consensus       182 -~~~~~~~~~~~~~--------~~~~~-----~~~~~~~~i~~l~~~~~y~~~v~a~N~~  227 (245)
                       ....+........        .....     ......+.|.++...+.+.|.|.|.|..
T Consensus       164 ~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~  223 (242)
T 2znx_A          164 GNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDGD  223 (242)
T ss_dssp             TSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTSS
T ss_pred             CCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCCc
Confidence             1111100000000        00000     0112579999999999999999999953

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.64  E-value=1.3e-14  Score=102.62  Aligned_cols=174  Identities=12%  Similarity=0.146  Sum_probs=102.2

Q ss_pred             cceEEecCCCeEEEEEEEeecCCCeEEEEEC--CEEe------------ccCCcEEEEecCceeEEEEccCCCCCCeEEE
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GTAI------------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      +....+.+|+.+.|.|.+.+.+.+.+.|+++  +..+            ....++.+...+....|.|.++..+|.|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            5567789999999999999988889999983  2211            1124555554555678999999999999999


Q ss_pred             EEEEeCCceeE---EEEEEEecCCCCccccC---ccccCCCeeEEEEEeCCCCCceEEEEEEEeec-CCCC-eEEEeeCC
Q psy12131        122 CQASNNLGSSQ---QFIQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE-ELTP-WRNIVIPS  193 (245)
Q Consensus       122 C~~~n~~g~~~---~~~~~~~~~~~p~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~  193 (245)
                      |.+.|..+...   ..+.+...+.+|.+...   .....+..+.|.|.+.+..|...-..|+++.. .... ........
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~  166 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQD  166 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCC
T ss_pred             EEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCcc
Confidence            99999775322   13333333334443321   12346789999999965322211223555433 1111 11111110


Q ss_pred             CCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        194 DGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       194 ~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      ... ........+.|..+...+...|.|.|.|.....
T Consensus       167 ~~~-~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          167 SKD-STYSMSSTLSLTKADYESHNLYTCEVVHKTSSS  202 (210)
T ss_dssp             TTT-CCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             CCC-CCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence            000 000112356777666555566666699986543

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.63  E-value=2.5e-14  Score=107.93  Aligned_cols=175  Identities=14%  Similarity=0.134  Sum_probs=105.5

Q ss_pred             EEeecceEEecCCCeEEEEEEEeec-CCCeEEEEECCEEec----c-----CCcEEEEec-----CceeEEEEccCCCCC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYAN-PPAKVEWFRDGTAIT----L-----GGRIDMHVS-----SEKHSLLVRHIKDTD  116 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~w~~~~~~~~----~-----~~~~~~~~~-----~~~~~l~i~~~~~~d  116 (245)
                      +...+..+.+.+|+.+.|.|.+.+. |.+.+.|++++....    .     ..++.....     .....|.|.++..+|
T Consensus         6 v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D   85 (327)
T 2wng_A            6 VIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPAD   85 (327)
T ss_dssp             EECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGG
T ss_pred             EEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcccc
Confidence            4445667888999999999999987 888999999864311    0     113332111     345689999999999


Q ss_pred             CeEEEEEEEeCCcee-------EEEEEEEecCCCCccccC-ccccCCCeeEEEEEeCCCCCc-eEEEEEEEeec-CCCCe
Q psy12131        117 FGNYMCQASNNLGSS-------QQFIQLSGIPNIPVFQKS-SRRLGPDGYRLVWQVDTYSGI-IQYLLKFRERE-ELTPW  186 (245)
Q Consensus       117 ~g~y~C~~~n~~g~~-------~~~~~~~~~~~~p~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~~~  186 (245)
                      .|.|.|.+.|..+..       ...+.+...|.+|.+... .....++.+.|.|.+.+.+|. ..+ .|+++.. .....
T Consensus        86 ~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v-~W~k~g~~l~~~~  164 (327)
T 2wng_A           86 AGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITL-KWFKNGNELSDFQ  164 (327)
T ss_dssp             CEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEE-EEEETTEECCCEE
T ss_pred             CeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEE-EEEECCEEccccc
Confidence            999999999986531       124555556666554422 345678899999999655432 122 2455433 11111


Q ss_pred             EEEeeCCCCCCCccee-eeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        187 RNIVIPSDGSLAGPIY-TQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~-~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      .........   .... ...+.|......+...|+|.|.|..|.+
T Consensus       165 ~~~~~~~~~---~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~  206 (327)
T 2wng_A          165 TNVDPVGES---VSYSIHSTAKVVLTREDVHSQVICEVAHVTLQG  206 (327)
T ss_dssp             EEEECSSCC---SCEEEEEEEEEECCTTGGGCEEEEEEECTTSCS
T ss_pred             cccccccCC---CceEEEEEEEEechhcCcCceEEEEEeccccCC
Confidence            111111110   1111 1234454444444466677799998874

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.63  E-value=5.6e-15  Score=99.21  Aligned_cols=104  Identities=18%  Similarity=0.234  Sum_probs=85.1

Q ss_pred             eEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEec-CceeEEEEccCCCCCCe
Q psy12131         40 KNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS-SEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        40 ~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g  118 (245)
                      ....+.+..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+... .....|.|.++...|.|
T Consensus        32 ~~~~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G  111 (154)
T 1fhg_A           32 EVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDA  111 (154)
T ss_dssp             --CCCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCE
T ss_pred             ehhcccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCE
Confidence            33445556788888887788899999999999999999999999999999887777766543 34578999999999999


Q ss_pred             EEEEEEEeCCceeEEEEEEEecCCC
Q psy12131        119 NYMCQASNNLGSSQQFIQLSGIPNI  143 (245)
Q Consensus       119 ~y~C~~~n~~g~~~~~~~~~~~~~~  143 (245)
                      .|+|.+.|..|.....+.|.+...|
T Consensus       112 ~Y~C~a~N~~G~~~~~~~l~V~~~p  136 (154)
T 1fhg_A          112 KYTCKAVNSLGEATCTAELLVETMG  136 (154)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECC-
T ss_pred             EEEEEEEECCCeEEEEEEEEEeCcC
Confidence            9999999999998887777765433

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.63  E-value=1.1e-14  Score=101.76  Aligned_cols=124  Identities=15%  Similarity=0.148  Sum_probs=89.0

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeec-CC---
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN-PP---   78 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~---   78 (245)
                      ++.+..++..|.|.+++.+|+|.|.|.|.+..+. ..+.+.|.|..+|........ ....|+.+ |.|.+.+. |.   
T Consensus        51 ~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~-~~~~~~ltV~~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~  127 (210)
T 1gsm_A           51 AVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT-FQHTVQLLVYAFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPN  127 (210)
T ss_dssp             CEEEESSEEEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEBCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTT
T ss_pred             cEEecCCccEEEECccCcccCceEEEEEEeCCCc-eEEEEEEEEEecCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCC
Confidence            4555556677999999999999999999998766 678899999999976553322 45567778 99999885 63   


Q ss_pred             -CeEEEEECCEEeccCCcEE--E-E----e-cCc------eeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         79 -AKVEWFRDGTAITLGGRID--M-H----V-SSE------KHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        79 -~~~~w~~~~~~~~~~~~~~--~-~----~-~~~------~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                       +.+.|++++..+.......  + .    . ...      .+++.+.....++.+.|+|.|.+.+-
T Consensus       128 ~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~  193 (210)
T 1gsm_A          128 ALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLP  193 (210)
T ss_dssp             TEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEET
T ss_pred             CcEEEEEECCEEcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCC
Confidence             4899999999885432101  1 0    0 001      23444446666667899999998763

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.63  E-value=1.4e-15  Score=95.49  Aligned_cols=93  Identities=17%  Similarity=0.334  Sum_probs=81.7

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+........|.|.++...|.|.|.|.+.|.
T Consensus        13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   92 (106)
T 1nct_A           13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENS   92 (106)
T ss_dssp             CCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCS
T ss_pred             CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeC
Confidence            35677777778889999999999999999999999999998888777877776666789999999999999999999999


Q ss_pred             CceeEEEEEEEec
Q psy12131        128 LGSSQQFIQLSGI  140 (245)
Q Consensus       128 ~g~~~~~~~~~~~  140 (245)
                      .|.....+.|.+.
T Consensus        93 ~G~~~~~~~l~V~  105 (106)
T 1nct_A           93 EGKQEAEFTLTIQ  105 (106)
T ss_dssp             SCBCCEEEEEEEC
T ss_pred             CCeEEEEEEEEEE
Confidence            9998888877764

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.63  E-value=4.2e-15  Score=102.11  Aligned_cols=152  Identities=13%  Similarity=0.153  Sum_probs=94.2

Q ss_pred             eEEecCCCeEEEEEEEee--cCCCeEEEEECCEEec----------cCCcEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         58 WIHTAPDMRAEIICNVYA--NPPAKVEWFRDGTAIT----------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~--~~~~~~~w~~~~~~~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      .+.+.+|+.+.|.|...+  .+.+.+.|++++..+.          ...++.+..   ...|.|.++..+|.|.|.|.+.
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~---~gsL~I~~v~~~D~G~Y~C~~~   81 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILA---NGDLKIKNLTRDDSGTYNVTVY   81 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECT---TSCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECC---CCcEEEcccccccCEEEEEEEE
Confidence            355779999999995433  4556899999986542          233444422   2359999999999999999999


Q ss_pred             eCCcee--EEEEEEEecCC--CCccccCccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcce
Q psy12131        126 NNLGSS--QQFIQLSGIPN--IPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPI  201 (245)
Q Consensus       126 n~~g~~--~~~~~~~~~~~--~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (245)
                      |..|..  ...+.|.+...  .|.+.     ..+..+.|.|.+.+.+++ .+ .|+++..      .+.....       
T Consensus        82 n~~g~~~~~~~~~l~V~~~~~~p~i~-----~~~~~v~L~C~~~g~p~p-~i-~W~~~g~------~l~~~~~-------  141 (176)
T 1hng_A           82 STNGTRILNKALDLRILEMVSKPMIY-----WECSNATLTCEVLEGTDV-EL-KLYQGKE------HLRSLRQ-------  141 (176)
T ss_dssp             ETTCCEEEEEEEEEEEECCCCCCEEE-----EETTTTEEEEECSSCSSC-EE-EEEETTE------EEEEESS-------
T ss_pred             eCCCCEEEEEEEEEEEeCCCCCCEEE-----ecCCcEEEEEEecCCCCc-EE-EEEECCE------ECCCCCc-------
Confidence            998875  55566665432  23222     223458999999776552 33 2444322      1111111       


Q ss_pred             eeeEEEecCCCCCceEEEEEEEEecCCCCCCCcce
Q psy12131        202 YTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAY  236 (245)
Q Consensus       202 ~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~  236 (245)
                        ..+....  ..+.+.|+|.|.|.+|....+..+
T Consensus       142 --~~i~~~~--~~d~G~Y~C~a~N~~g~~~~~~~l  172 (176)
T 1hng_A          142 --KTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV  172 (176)
T ss_dssp             --SEEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred             --EEEEEEE--ccCCeEEEEEEEecCCCceecccc
Confidence              2222223  444455555599999976655444

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.63  E-value=2.1e-14  Score=101.63  Aligned_cols=131  Identities=15%  Similarity=0.217  Sum_probs=85.0

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECC---EE--e---------ccCCcEEEEecCceeEEEEccCCCC
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDG---TA--I---------TLGGRIDMHVSSEKHSLLVRHIKDT  115 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~---~~--~---------~~~~~~~~~~~~~~~~l~i~~~~~~  115 (245)
                      |.+...+..+.+.+|+.+.|.|.+.+.+.+.+.|++..   ..  +         ....++.+........|.|.++..+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE   81 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence            34555566788899999999999999888999999822   11  1         1134565555556779999999999


Q ss_pred             CCeEEEEEEEeCCce-eE--EEEEEEecCCCCccccC---ccccCCCeeEEEEEeCCCCCceEEEEEEEee
Q psy12131        116 DFGNYMCQASNNLGS-SQ--QFIQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDTYSGIIQYLLKFRER  180 (245)
Q Consensus       116 d~g~y~C~~~n~~g~-~~--~~~~~~~~~~~p~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  180 (245)
                      |.|.|.|.+.|..+. ..  ..+.+...+.+|.+...   .....+..+.|.|.+.+..|......|+++.
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g  152 (213)
T 3r06_A           82 DIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDG  152 (213)
T ss_dssp             GCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred             cCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECC
Confidence            999999999987542 12  23333222344443321   2234567899999996543321223355543

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.63  E-value=8.5e-14  Score=101.42  Aligned_cols=175  Identities=9%  Similarity=0.053  Sum_probs=106.9

Q ss_pred             eEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECC--E---Ee----------ccCCcEEE--EecCceeEEEEccCC
Q psy12131         51 EVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDG--T---AI----------TLGGRIDM--HVSSEKHSLLVRHIK  113 (245)
Q Consensus        51 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~--~---~~----------~~~~~~~~--~~~~~~~~l~i~~~~  113 (245)
                      .+...+..+.+.+|+.+.|.|.+.+.+.+.+.|++..  .   .+          ....++.+  ........|.|.+++
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~   84 (256)
T 3tf7_C            5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH   84 (256)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred             EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence            3444556778889999999999999999999999821  1   11          11234443  223456689999999


Q ss_pred             CCCCeEEEEEEEeCCce----eEEEEEEEecC-------------------CCCccccC---ccccCCCeeEEEEEeCCC
Q psy12131        114 DTDFGNYMCQASNNLGS----SQQFIQLSGIP-------------------NIPVFQKS---SRRLGPDGYRLVWQVDTY  167 (245)
Q Consensus       114 ~~d~g~y~C~~~n~~g~----~~~~~~~~~~~-------------------~~p~~~~~---~~~~~~~~~~l~~~~~~~  167 (245)
                      .+|.|.|.|.+.|..+.    ......|.+.+                   .+|.+...   .....++.++|.|.+.+.
T Consensus        85 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~  164 (256)
T 3tf7_C           85 RSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS  164 (256)
T ss_dssp             GGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC
T ss_pred             cccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC
Confidence            99999999999987542    11122333332                   22322221   233578999999999665


Q ss_pred             CCceEEEEEEEeec-CCCCeEEEeeCCCCC-------CC----cceeeeEEEecCCCCCceEEEEEEEEecCC
Q psy12131        168 SGIIQYLLKFRERE-ELTPWRNIVIPSDGS-------LA----GPIYTQSYNITGLQLFTQYEASVLAKNRFG  228 (245)
Q Consensus       168 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~~----~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G  228 (245)
                      .+   ...||+... ....+..........       ..    .......|.|.++...+...|.|.|.|..|
T Consensus       165 ~~---~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g  234 (256)
T 3tf7_C          165 HN---YMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPG  234 (256)
T ss_dssp             CS---EEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETT
T ss_pred             ce---EEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCC
Confidence            44   234555432 111111110000000       00    011235799999999999999999999876

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.62  E-value=1.2e-14  Score=101.98  Aligned_cols=180  Identities=13%  Similarity=0.105  Sum_probs=109.0

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcE-EEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI-DMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      .+|.+...+. ..+.+|++++|.|.+. .+.+.+.|++++..+...... ..........|.|.++..+|.|.|.|.+.+
T Consensus         7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~   84 (201)
T 1nkr_A            7 RKPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSV   84 (201)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             CCCeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEec
Confidence            4677766665 5578999999999997 467899999988654321110 011122356899999999999999999986


Q ss_pred             CC-----ceeE--EEEEEEecCCCCccccC--ccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCC
Q psy12131        127 NL-----GSSQ--QFIQLSGIPNIPVFQKS--SRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSL  197 (245)
Q Consensus       127 ~~-----g~~~--~~~~~~~~~~~p~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (245)
                      ..     ....  ..+.+...+.+|.+...  ..+..|+.++|.|.+.+..+  .|. |+++...............   
T Consensus        85 ~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~~~--~~~-w~k~g~~~~~~~~~~~~~~---  158 (201)
T 1nkr_A           85 THSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSSYD--MYH-LSREGEAHERRLPAGPKVN---  158 (201)
T ss_dssp             TTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEESSCCS--EEE-EEETTCSSCEEEECEEEET---
T ss_pred             CCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeCCCCCc--eEE-EEECCcccCcccccccccC---
Confidence            42     1122  24444443344443322  24578899999999976433  333 5665431111110000000   


Q ss_pred             CcceeeeEEEecCCCCCceEEEEEEEEecC---CCCCCCcceEEe
Q psy12131        198 AGPIYTQSYNITGLQLFTQYEASVLAKNRF---GWSRPSKAYVFA  239 (245)
Q Consensus       198 ~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~---G~~~~s~~~~~~  239 (245)
                        ......|.|.++.  +.+.|+|.|.|..   ..+..|+.+.+.
T Consensus       159 --~~~~~~L~i~~v~--d~G~Y~C~a~~~~~~~~~s~~S~~~~l~  199 (201)
T 1nkr_A          159 --GTFQADFPLGPAT--HGGTYRCFGSFHDSPYEWSKSSDPLLVS  199 (201)
T ss_dssp             --TEEEEEEEEEECC--SCEEEEEEEEETTEEEEECCCCCCEEEE
T ss_pred             --CceEEEEEeCCcC--CCeeEEEEEEcCCCCCcCCCCCCCEEEE
Confidence              0112567787887  6666777788653   456778777654

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.62  E-value=3e-16  Score=112.78  Aligned_cols=120  Identities=17%  Similarity=0.226  Sum_probs=71.7

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec---CCeEEeecceEEecCCCeEEEEEEEeecCC-C-eEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWIHTAPDMRAEIICNVYANPP-A-KVEWF   84 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~-~~~w~   84 (245)
                      ..+|.|.+++.+|+|.|+|.+.+..+........|.|..   +|.+...+.......|+.+.|.|.+.+.++ + .+.|+
T Consensus        92 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~  171 (233)
T 3bqu_C           92 DFVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWK  171 (233)
T ss_dssp             EEEEC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEE
T ss_pred             EEEEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEE
Confidence            346999999999999999999987653222333456654   666665443333346899999999998544 3 79999


Q ss_pred             ECCEEeccCCcEE--EEecC-----ceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         85 RDGTAITLGGRID--MHVSS-----EKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        85 ~~~~~~~~~~~~~--~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      +++..+.......  .....     ..+.|.|.....+|.|.|+|.+.|...
T Consensus       172 k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          172 IDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             EC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             ECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            9998765431111  00011     124688888888899999999999753

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.62  E-value=7.6e-15  Score=107.16  Aligned_cols=119  Identities=12%  Similarity=0.186  Sum_probs=86.3

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCC--ceeeEEEEEEec-----------------CCeEEeecceEEecCCCeEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVNVIY-----------------PPEVSVEKQWIHTAPDMRAEI   69 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~-----------------~p~~~~~~~~~~~~~g~~~~l   69 (245)
                      +..+|.|.+++.+|+|.|+|.+.+..+.  .......|.|..                 +|.+...+....+.+|+.+.|
T Consensus        77 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L  156 (259)
T 3omz_A           77 KNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTL  156 (259)
T ss_dssp             CCCEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEE
T ss_pred             CeEEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEE
Confidence            3456999999999999999999987652  134456677765                 345666667778899999999


Q ss_pred             EEEEeec-CCCeEEEEECC--EEec------------cCCcEEEE--ecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         70 ICNVYAN-PPAKVEWFRDG--TAIT------------LGGRIDMH--VSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        70 ~C~~~~~-~~~~~~w~~~~--~~~~------------~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .|.+.+. +.+.+.|++..  ....            ...++.+.  .......|.|.+++.+|.|.|.|.+.+.
T Consensus       157 ~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          157 NCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             CCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             EEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence            9998874 77899999832  1110            01334333  1223457999999999999999999853

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.62  E-value=2.9e-14  Score=87.95  Aligned_cols=88  Identities=16%  Similarity=0.296  Sum_probs=76.4

Q ss_pred             EeecceEEecCCCeEEEEEEEeec-CCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  131 (245)
                      ...+....+.+|+.+.|.|.+.+. |.|.+.|++++..+....++.+...+....|.|.++..+|.|.|.|.+.|..|..
T Consensus         5 ~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~   84 (97)
T 2bk8_A            5 SGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGED   84 (97)
T ss_dssp             ECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             eccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeE
Confidence            334556778999999999999997 8899999999999888778777666667799999999999999999999999998


Q ss_pred             EEEEEEEec
Q psy12131        132 QQFIQLSGI  140 (245)
Q Consensus       132 ~~~~~~~~~  140 (245)
                      ...+.|.+.
T Consensus        85 ~~~~~l~V~   93 (97)
T 2bk8_A           85 SSYAELFVK   93 (97)
T ss_dssp             EEEEEEEET
T ss_pred             eEEEEEEEE
Confidence            888877765

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.62  E-value=8.2e-14  Score=101.11  Aligned_cols=174  Identities=15%  Similarity=0.178  Sum_probs=105.7

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCCCeEEEEECC-----EEe---------ccCCcEEEEecCceeEEEEccCCCCCC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDG-----TAI---------TLGGRIDMHVSSEKHSLLVRHIKDTDF  117 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~-----~~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~  117 (245)
                      +...+..+.+.+|+.+.|.|.+.+.+.+.+.|++..     ..+         ....++..........|.|.+++.+|.
T Consensus         7 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   86 (250)
T 3esu_F            7 LIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDI   86 (250)
T ss_dssp             EECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhC
Confidence            344556677889999999999999999999999842     111         112455555555567899999999999


Q ss_pred             eEEEEEEEeCCceeE-EEEEEEecCC------------------CCcc-c--cCccccCCCeeEEEEEeCCCCCceEEEE
Q psy12131        118 GNYMCQASNNLGSSQ-QFIQLSGIPN------------------IPVF-Q--KSSRRLGPDGYRLVWQVDTYSGIIQYLL  175 (245)
Q Consensus       118 g~y~C~~~n~~g~~~-~~~~~~~~~~------------------~p~~-~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~  175 (245)
                      |.|.|.+.|..+... ....+.+...                  ++.. .  .......++.+.|.|.+.+.++......
T Consensus        87 G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~  166 (250)
T 3esu_F           87 GTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMN  166 (250)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEE
T ss_pred             EEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEE
Confidence            999999998754321 1122333221                  1111 1  1123567899999999966432223445


Q ss_pred             EEEeec-CCCCeEEEeeCCC---------CCCC-----cceeeeEEEecCCCCCceEEEEEEEEe
Q psy12131        176 KFRERE-ELTPWRNIVIPSD---------GSLA-----GPIYTQSYNITGLQLFTQYEASVLAKN  225 (245)
Q Consensus       176 ~~~~~~-~~~~~~~~~~~~~---------~~~~-----~~~~~~~~~i~~l~~~~~y~~~v~a~N  225 (245)
                      |+++.. ....+........         ....     .......+.|.++...+.+.|.|.|.|
T Consensus       167 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          167 WVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            666532 1111211100000         0000     001124699999999999999999998

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=6e-15  Score=91.39  Aligned_cols=88  Identities=10%  Similarity=0.172  Sum_probs=73.8

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +|.+...+....+.+|+.+.|.|.+  .|.|.+.|++++..+....++.+...+....|.|.++..+|.|.|+|.|.|..
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~   84 (100)
T 2yuz_A            7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAYN   84 (100)
T ss_dssp             CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSSC
T ss_pred             CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCCC
Confidence            5666667777889999999999999  78899999999999988888888877777899999999999999999999983


Q ss_pred             ceeEEEEEEE
Q psy12131        129 GSSQQFIQLS  138 (245)
Q Consensus       129 g~~~~~~~~~  138 (245)
                      ......+.+.
T Consensus        85 ~~~~a~L~V~   94 (100)
T 2yuz_A           85 VTLPAKVHVI   94 (100)
T ss_dssp             CCEEEEEEEE
T ss_pred             eeEEEEEEEe
Confidence            3344444444

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.62  E-value=3.5e-14  Score=103.24  Aligned_cols=183  Identities=14%  Similarity=0.127  Sum_probs=109.1

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcE-EEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI-DMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      .+|.+...+. ..+.+|++++|.|.+.+ +.+.+.|++++..+...... ..........|.|.++..+|.|.|+|.+.+
T Consensus         6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~   83 (257)
T 1b6u_A            6 RKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSV   83 (257)
T ss_dssp             CCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEEC
T ss_pred             CCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEec
Confidence            4677766665 55789999999999874 56799999987643211000 000112356899999999999999999986


Q ss_pred             CCc-----eeE--EEEEEEecCCCCccccC--ccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCC
Q psy12131        127 NLG-----SSQ--QFIQLSGIPNIPVFQKS--SRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSL  197 (245)
Q Consensus       127 ~~g-----~~~--~~~~~~~~~~~p~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (245)
                      ..+     ...  ..+.+...+.+|.+...  ..+..++.++|.|.+.+..+  .|. |+++...............   
T Consensus        84 ~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~~~~~~--~~~-w~k~g~~~~~~~~~~~~~~---  157 (257)
T 1b6u_A           84 THSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSSYD--MYH-LSREGEAHERRFSAGPKVN---  157 (257)
T ss_dssp             SSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEECSSCCS--EEE-EEETTSSCEECCBCBCCSS---
T ss_pred             cCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeCCCCCc--EEE-EEECCcccCcccccccccC---
Confidence            421     122  24444443344443322  24578899999999976543  343 5665431000000000000   


Q ss_pred             CcceeeeEEEecCCCCCceEEEEEEEEecC---CCCCCCcceEEecCC
Q psy12131        198 AGPIYTQSYNITGLQLFTQYEASVLAKNRF---GWSRPSKAYVFATEG  242 (245)
Q Consensus       198 ~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~---G~~~~s~~~~~~t~~  242 (245)
                        ......|.|.++.  +.+.|+|.|.|..   ..+..|..+.+...+
T Consensus       158 --~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g  201 (257)
T 1b6u_A          158 --GTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTG  201 (257)
T ss_dssp             --SCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBC
T ss_pred             --CceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEec
Confidence              0112567888887  6677777799764   356677776665443

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.61  E-value=1.8e-14  Score=91.92  Aligned_cols=96  Identities=21%  Similarity=0.335  Sum_probs=79.9

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEecc-CCcEEEEecC-ceeEEEEccCCCCCCeEEEEEEE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSS-EKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.. ..++.+...+ ....|.|.++..+|.|.|.|.+.
T Consensus        14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   93 (116)
T 2kkq_A           14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAV   93 (116)
T ss_dssp             BCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEE
T ss_pred             CCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEE
Confidence            578888888888899999999999999999999999999988774 3556555443 34589999999999999999999


Q ss_pred             eCCceeEEEEEEEecCCC
Q psy12131        126 NNLGSSQQFIQLSGIPNI  143 (245)
Q Consensus       126 n~~g~~~~~~~~~~~~~~  143 (245)
                      |..|.....+.|.+...|
T Consensus        94 N~~G~~~~~~~l~V~~~p  111 (116)
T 2kkq_A           94 NEAGVTTCNTRLDVTARP  111 (116)
T ss_dssp             ETTEEEEEEEEEEEECCS
T ss_pred             cCCCeEEEEEEEEEeCCC
Confidence            999998887777765433

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.61  E-value=1.2e-14  Score=109.19  Aligned_cols=174  Identities=10%  Similarity=0.028  Sum_probs=108.6

Q ss_pred             EEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEE
Q psy12131         42 FIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        42 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      +...+..+|.+...+. ..+.+|+.+.|.|.+.+. .+.+.|++++..+.....    .......|.|.++..+|.|.|.
T Consensus        17 ~~~~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~   90 (316)
T 3vh8_G           17 SHMGGQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFH----GRIFQESFNMSPVTTAHAGNYT   90 (316)
T ss_dssp             -------CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHH----HCCBSSCEEECSCCGGGCEEEE
T ss_pred             cccCCCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeec----CCcceEEEEECCCCcccCeEEE
Confidence            4445557888888876 457799999999999877 689999999876432110    1123457999999999999999


Q ss_pred             EEEEeCC-----ceeEE--EEEEEecCCCCccccC--ccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeC
Q psy12131        122 CQASNNL-----GSSQQ--FIQLSGIPNIPVFQKS--SRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIP  192 (245)
Q Consensus       122 C~~~n~~-----g~~~~--~~~~~~~~~~p~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (245)
                      |.+.|..     +....  .+.+...+.+|.+...  ..+..++.+.|.|.+.+.++  .| .||++.. ..........
T Consensus        91 C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~--~~-~w~k~g~-~~~~~~~~~~  166 (316)
T 3vh8_G           91 CRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMFE--HF-FLHKEGI-SKDPSRLVGQ  166 (316)
T ss_dssp             EEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEESSCCS--EE-EEEETTC-CSCCEEEECE
T ss_pred             EEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcCCCCCc--EE-EEEECCC-ccccceeeee
Confidence            9998632     22223  3344333334443322  22567899999999955433  33 3555543 1111110000


Q ss_pred             CCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        193 SDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       193 ~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      .    ........|.|.++...+.+.|+|.|.|..|.
T Consensus       167 ~----~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  199 (316)
T 3vh8_G          167 I----HDGVSKANFSIGPMMLALAGTYRCYGSVTHTP  199 (316)
T ss_dssp             E----ETTEEEEEEEECSCCGGGCEEEEEEEECTTCT
T ss_pred             e----cCCCceEEEEECCCChhhCceEEEEEecCCCC
Confidence            0    00112367899999999999999999999885

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.61  E-value=6.3e-15  Score=92.74  Aligned_cols=94  Identities=21%  Similarity=0.381  Sum_probs=73.4

Q ss_pred             cCCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCe-EEEeeCCCCCCCcceeeeEEEecCCCCCce
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPW-RNIVIPSDGSLAGPIYTQSYNITGLQLFTQ  216 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  216 (245)
                      .|.+|.+....  ...+++.|.|.+  +++.|+.+|.++|+... ...| ....++...        ..+.+.+|.+++.
T Consensus         8 ~P~pP~~~~~~--~~~~sv~L~W~p~~dggsPI~~Y~I~yr~~~-~~~w~~~~~~~~~~--------~~~~l~~L~p~t~   76 (114)
T 2kbg_A            8 EPSPPSIHGQP--SSGKSFKLSITKQDDGGAPILEYIVKYRSKD-KEDQWLEKKVQGNK--------DHIILEHLQWTMG   76 (114)
T ss_dssp             CCCSCCEECCB--CSTTCEEEEECCCCCSSSCCSEEEEEEEESS-CCSCCEEEEEETTT--------CCEEECCCCTTCC
T ss_pred             CccCCcccccc--cCCCEEEEEEECCCCCCCcccEEEEEEEeCC-CCCcEEeEEcCCCc--------CEEEEcCCCCCCE
Confidence            56677665443  678899999998  46789999999999975 3444 433333332        5789999999999


Q ss_pred             EEEEEEEEecCCCCCCCcceEEecCCCCC
Q psy12131        217 YEASVLAKNRFGWSRPSKAYVFATEGAET  245 (245)
Q Consensus       217 y~~~v~a~N~~G~~~~s~~~~~~t~~~~~  245 (245)
                      |.|||.|.|..|.|.+|. +.+.|..++|
T Consensus        77 Y~frV~A~N~~G~s~pS~-~~~~T~~~~~  104 (114)
T 2kbg_A           77 YEVQITAANRLGYSEPTV-YEFSMPPKPN  104 (114)
T ss_dssp             EEEEEEEECTTSCEEEEE-EEECCCCCCS
T ss_pred             EEEEEEEEeCCcCcCCcC-CEEEcCCCCc
Confidence            999999999999999886 6788877654

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.61  E-value=4.3e-14  Score=101.68  Aligned_cols=178  Identities=11%  Similarity=0.134  Sum_probs=104.5

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECC--EE---e---------ccCCcEEEEecCceeEEEEccCCCC
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDG--TA---I---------TLGGRIDMHVSSEKHSLLVRHIKDT  115 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~--~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~  115 (245)
                      +.+...+..+.+.+|+.+.|.|.+.+.+.+.+.|++..  ..   +         ....++..........|.|.+++.+
T Consensus        25 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  104 (237)
T 3sob_L           25 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPE  104 (237)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             ceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChh
Confidence            44555566778899999999999998888899999832  10   0         1134565555556778999999999


Q ss_pred             CCeEEEEEEEeCCce---eEEEEEEEecCCCCccccC---ccccCCCeeEEEEEeCCCCC-ceEEEEEEEeec-CCCCe-
Q psy12131        116 DFGNYMCQASNNLGS---SQQFIQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDTYSG-IIQYLLKFRERE-ELTPW-  186 (245)
Q Consensus       116 d~g~y~C~~~n~~g~---~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~~~-  186 (245)
                      |.|.|.|.+.+..+.   ....+.+...+.+|.+...   .....+..+.|.|.+.+..| ...+ .|+++.. ..... 
T Consensus       105 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v-~W~k~g~~~~~~~~  183 (237)
T 3sob_L          105 DFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKV-QWKVDNALQSGNSQ  183 (237)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEE-EEEETTEECCSSEE
T ss_pred             hCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEE-EEEECCCCCCCcee
Confidence            999999999887642   2224444444455544322   11234678999999965333 2223 3555433 11110 


Q ss_pred             EEEeeCCCCCCCccee-eeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        187 RNIVIPSDGSLAGPIY-TQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~-~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      .........  ..... ...+.+......+...|+|.|.|.....
T Consensus       184 ~~~~~~~~~--~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  226 (237)
T 3sob_L          184 ESVTEQDSK--DSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  226 (237)
T ss_dssp             EEECCCCTT--TCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             ecccccccC--CCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCC
Confidence            111111100  11111 2335555554444555566699987554

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.61  E-value=1.6e-14  Score=102.86  Aligned_cols=176  Identities=14%  Similarity=0.024  Sum_probs=100.7

Q ss_pred             cceEEecCCCeEEEEEEEeecCC-----CeEEEEECCEEecc---------------CCcEEEEe---cCceeEEEEccC
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPP-----AKVEWFRDGTAITL---------------GGRIDMHV---SSEKHSLLVRHI  112 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~-----~~~~w~~~~~~~~~---------------~~~~~~~~---~~~~~~l~i~~~  112 (245)
                      +..+.+..|+.+.|.|.+.+.|.     +.+.|++++..+..               ..+..+..   ......|.|.++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   87 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV   87 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred             CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence            44567889999999999977663     38999997533211               12222211   123468999999


Q ss_pred             CCCCCeEEEEEEEeCCceeEEEEEEEecCC--CCccccCccccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEE
Q psy12131        113 KDTDFGNYMCQASNNLGSSQQFIQLSGIPN--IPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRN  188 (245)
Q Consensus       113 ~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  188 (245)
                      ..+|.|.|.|.+.| .+.....+.|.+...  .+..........++.+.|.|.+.+.++. . ..|+++.+  .......
T Consensus        88 ~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p-~-i~W~~~~g~~~~~~~~~  164 (222)
T 3sbw_C           88 KLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKA-E-VIWTSSDHQVLSGKTTT  164 (222)
T ss_dssp             CGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCC-E-EEEEETTCCEECCEEEE
T ss_pred             ccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCC-e-EEEEECCCceecCccce
Confidence            99999999999999 555555666655422  2222221234678899999999664432 2 23444422  0111111


Q ss_pred             -EeeCCCCCCCccee-eeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecC
Q psy12131        189 -IVIPSDGSLAGPIY-TQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE  241 (245)
Q Consensus       189 -~~~~~~~~~~~~~~-~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~  241 (245)
                       .......    ... ...+.+   ...+...|+|.|.|..|....+..+.+...
T Consensus       165 ~~~~~~~~----~~~~~~~l~v---~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~  212 (222)
T 3sbw_C          165 TNSKREEK----LFNVTSTLRI---NTTTNEIFYCTFRRLDPEENHTAELVIPEL  212 (222)
T ss_dssp             EECC--------CEEEEEEEEE---ECCTTCEEEEEEEETTTTEEEEEEEECCCC
T ss_pred             EEEcCCCC----CEEEEEEEEE---eccCCcEEEEEEEeCccceeeEEEEEecCC
Confidence             1111111    011 111222   233344556669999998776666666533

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.61  E-value=4.5e-14  Score=99.99  Aligned_cols=170  Identities=12%  Similarity=0.136  Sum_probs=100.8

Q ss_pred             cceEEecCCCeEEEEEEEeec-------CCCeEEEEECCEE------e-----------ccCCcEEEEec--CceeEEEE
Q psy12131         56 KQWIHTAPDMRAEIICNVYAN-------PPAKVEWFRDGTA------I-----------TLGGRIDMHVS--SEKHSLLV  109 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~-------~~~~~~w~~~~~~------~-----------~~~~~~~~~~~--~~~~~l~i  109 (245)
                      +..+.+.+|+.+.|.|.+.+.       +.+.+.|++++..      +           ....++.+...  .....|.|
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I   86 (214)
T 2zg1_A            7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSI   86 (214)
T ss_dssp             CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEE
Confidence            456778899999999998754       4678999997642      1           01234444321  23457999


Q ss_pred             ccCCCCCCeEEEEEEEeCCcee------EEEEEEEecCCCCccccCccccCCCeeEEEEEeCCC---CCceEEEEEEEee
Q psy12131        110 RHIKDTDFGNYMCQASNNLGSS------QQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTY---SGIIQYLLKFRER  180 (245)
Q Consensus       110 ~~~~~~d~g~y~C~~~n~~g~~------~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~  180 (245)
                      .+++.+|.|.|.|.+.+..+..      ...+.+...+.+|.+........++.+.|.|.+.+.   .|...+ .|+++.
T Consensus        87 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~G~~v~L~C~~~~~~~~~p~p~v-~W~~~~  165 (214)
T 2zg1_A           87 GDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTF-SWTGNA  165 (214)
T ss_dssp             CSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CCCCTTCCEEEEEECTTCCSCSSCCEE-EEESST
T ss_pred             ccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCccccCCCeEEEEEEeccCCCCCCCceE-EEeCCC
Confidence            9999999999999999876321      233444444445554433335678899999999653   132233 244443


Q ss_pred             cCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEE
Q psy12131        181 EELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVF  238 (245)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~  238 (245)
                      . ...       ...    ......+.|......+...|+|.|.|..|....+..+.+
T Consensus       166 ~-~~~-------~~~----~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l  211 (214)
T 2zg1_A          166 L-SPL-------DPE----TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQL  211 (214)
T ss_dssp             T-SSS-------CSS----CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEEC
T ss_pred             C-ccC-------CCC----ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEE
Confidence            2 100       000    011245677777666666677779998766555544443

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.61  E-value=2.7e-15  Score=94.57  Aligned_cols=100  Identities=22%  Similarity=0.354  Sum_probs=69.2

Q ss_pred             EEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEE
Q psy12131         42 FIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        42 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      +.|.+..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+.......+..  ....|.|.++..+|.|.|.
T Consensus         3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~D~G~Y~   80 (108)
T 3kvq_A            3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKD--GNRNLTIRRVRKEDEGLYT   80 (108)
T ss_dssp             --------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEET--TTTEEEECSCCGGGCEEEE
T ss_pred             eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeC--CCcEEEEeecCcccCEEEE
Confidence            45677788998888888889999999999999999999999999998877655554432  3457999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEecCCC
Q psy12131        122 CQASNNLGSSQQFIQLSGIPNI  143 (245)
Q Consensus       122 C~~~n~~g~~~~~~~~~~~~~~  143 (245)
                      |.+.|..|.....+.+.+...+
T Consensus        81 C~a~n~~g~~~~~~~l~V~~~~  102 (108)
T 3kvq_A           81 CQACSVLGCAKVEAFFIIEGAQ  102 (108)
T ss_dssp             EEEC----CEEEEEEEEEEC--
T ss_pred             EEEEeCCCceEEEEEEEEeCCC
Confidence            9999999988887777765433

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.61  E-value=7e-15  Score=107.90  Aligned_cols=129  Identities=19%  Similarity=0.212  Sum_probs=86.6

Q ss_pred             cceEEEee---cceEEEeccCCCCCEEEEEEEEcCC-CCceeeEEEEEEec------CCeEEee-cceEEecCCCeEEEE
Q psy12131          2 KEIELLYN---RESLDLDRVTLKLAGLYQCIASNNI-GESTSKNFIVNVIY------PPEVSVE-KQWIHTAPDMRAEII   70 (245)
Q Consensus         2 ~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~   70 (245)
                      +|+.+..+   ..+|.|.+++.+|+|.|+|.+.+.. .........|.|..      +|.+... +....+..|+.+.|.
T Consensus        88 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~  167 (268)
T 3pl6_D           88 DRFFAVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLV  167 (268)
T ss_dssp             TTEEEECTTSSSEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEE
T ss_pred             CcEEEEecCCCEEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEE
Confidence            67777652   4569999999999999999999742 11134455677765      5554433 223334568999999


Q ss_pred             EEEeecCCC--eEEEEECCEEeccCCcEEE---E-----ecC---ceeEEEEccCCCCC-CeEEEEEEEeCCce
Q psy12131         71 CNVYANPPA--KVEWFRDGTAITLGGRIDM---H-----VSS---EKHSLLVRHIKDTD-FGNYMCQASNNLGS  130 (245)
Q Consensus        71 C~~~~~~~~--~~~w~~~~~~~~~~~~~~~---~-----~~~---~~~~l~i~~~~~~d-~g~y~C~~~n~~g~  130 (245)
                      |.+.+.+++  .+.|++++..+........   .     ..+   ..+.|.|......| .|.|+|.+.|....
T Consensus       168 C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          168 CLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             EEEEEEBSSCEEEEEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EEECcccCCCeEEEEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence            999986554  8999999988754311100   0     000   02456777776666 99999999997543

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.60  E-value=1.5e-14  Score=102.61  Aligned_cols=132  Identities=12%  Similarity=0.102  Sum_probs=83.9

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCCC--ceeeEEEEEEec----CCeEEeecceEEecCCCeEEEEE
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIIC   71 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C   71 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|+|.+.+..+.  .....+.|.|..    +|.+...+....+..|+.+.|.|
T Consensus        65 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C  144 (215)
T 1c5d_H           65 SRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGC  144 (215)
T ss_dssp             GGEEEEEETTTTEEEEEESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEE
T ss_pred             CcEEEEeeCCCceEEEEECCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEE
Confidence            46676642    247999999999999999999986422  122346777763    45555433223356799999999


Q ss_pred             EEeec-CCC-eEEEEECCEEeccCCcEEEEecCceeE--EEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131         72 NVYAN-PPA-KVEWFRDGTAITLGGRIDMHVSSEKHS--LLVRHIKDTDFGNYMCQASNNLGSSQQFI  135 (245)
Q Consensus        72 ~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~--l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  135 (245)
                      .+.+. |.| .+.|++++..+........... ....  ..+......+ |.|+|.+.|..+......
T Consensus       145 ~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~-g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~~  210 (215)
T 1c5d_H          145 LVKGYFPEPVTVTWNSGALSSDVHTFPAVLQS-GLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVDK  210 (215)
T ss_dssp             EEEEEBSSCCEEEEGGGTTCCSCCBCCCEEET-TEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             EEeeeEcCCcEEEEccCCccCceEecCcccCC-CCEEEEEEEecccCCC-CeEEEEEEeCCCCccEEE
Confidence            99986 777 9999998764321111111111 1111  1123333345 999999999887655433

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.60  E-value=1.7e-13  Score=98.74  Aligned_cols=175  Identities=12%  Similarity=0.084  Sum_probs=106.4

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecC----CCeEEEEECC--E---Eec---------cCCcEEEEecCceeEEEEccCC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANP----PAKVEWFRDG--T---AIT---------LGGRIDMHVSSEKHSLLVRHIK  113 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~----~~~~~w~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i~~~~  113 (245)
                      +...+..+.+.+|+.+.|.|.+.+.+    .+.+.|+++.  .   .+.         ...++.+...+....|.|.++.
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   83 (240)
T 1moe_A            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE   83 (240)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCC
Confidence            34456667889999999999999887    6789999842  1   111         1245655555556789999999


Q ss_pred             CCCCeEEEEEEEeCCce-eEEEEEEEecCC-----CCccc---cCccccCCCeeEEEEEeCCCCCceEEEEEEEeec-CC
Q psy12131        114 DTDFGNYMCQASNNLGS-SQQFIQLSGIPN-----IPVFQ---KSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE-EL  183 (245)
Q Consensus       114 ~~d~g~y~C~~~n~~g~-~~~~~~~~~~~~-----~p~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~  183 (245)
                      .+|.|.|.|.+.|..+. ......|.+...     ++...   .......++.+.|.|.+.+.++......|+++.. ..
T Consensus        84 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~  163 (240)
T 1moe_A           84 ADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQG  163 (240)
T ss_dssp             GGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSC
T ss_pred             hhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCC
Confidence            99999999999998553 222233333322     22211   1123567899999999976542212344566531 11


Q ss_pred             CCeEEEee-----------CCCCCC-C--cceeeeEEEecCCCCCceEEEEEEEEec
Q psy12131        184 TPWRNIVI-----------PSDGSL-A--GPIYTQSYNITGLQLFTQYEASVLAKNR  226 (245)
Q Consensus       184 ~~~~~~~~-----------~~~~~~-~--~~~~~~~~~i~~l~~~~~y~~~v~a~N~  226 (245)
                      ..+.....           ...... .  .......+.|.++...+.+.|.|.|.+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  220 (240)
T 1moe_A          164 LEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY  220 (240)
T ss_dssp             CEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred             cEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence            11110000           000000 0  0011256999999999999999999854

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.60  E-value=1.8e-14  Score=105.25  Aligned_cols=128  Identities=13%  Similarity=0.121  Sum_probs=85.3

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCCCc--eeeEEEEEEec----CCeEEeecceEEecCCCeEEEEE
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIGES--TSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIIC   71 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C   71 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|+|.+.+..+..  ....+.|.|..    +|.+...+....+..|+.+.|.|
T Consensus        72 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C  151 (261)
T 2xqy_G           72 DKVTLTVDKSSSTVYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGC  151 (261)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEE
T ss_pred             CcEEEEecCCCCEEEEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEE
Confidence            46777643    3579999999999999999999864311  12345777764    45554433223356799999999


Q ss_pred             EEeec-CCC-eEEEEECCEEeccCCcEEEEecC---ceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         72 NVYAN-PPA-KVEWFRDGTAITLGGRIDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        72 ~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      .+.+. |.+ .+.|++++..+.......+...+   ..+.|.|.....+| |.|+|.+.|....
T Consensus       152 ~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~  214 (261)
T 2xqy_G          152 LVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  214 (261)
T ss_dssp             EEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             EEEeEeCCCCEEEEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence            99875 666 99999987654211000011111   13578898888777 9999999997654

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.60  E-value=1.4e-14  Score=106.21  Aligned_cols=185  Identities=13%  Similarity=0.046  Sum_probs=111.0

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEe---ecCCCeEEEEECCEEecc------------------CCcEEEEe--cCceeE
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVY---ANPPAKVEWFRDGTAITL------------------GGRIDMHV--SSEKHS  106 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~---~~~~~~~~w~~~~~~~~~------------------~~~~~~~~--~~~~~~  106 (245)
                      +.+...+..+.+.+|+.+.|.|.+.   +.+.+.+.|++.+.....                  ..+..+..  ......
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   85 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS   85 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence            3444556667888999999999997   666778999985432111                  12222211  122367


Q ss_pred             EEEccCCCCCCeEEEEEEEeCCce--eEEEEEEEecCCCCccccCccccCCCeeEEEEEe---CCCCCceEEEEEEEeec
Q psy12131        107 LLVRHIKDTDFGNYMCQASNNLGS--SQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQV---DTYSGIIQYLLKFRERE  181 (245)
Q Consensus       107 l~i~~~~~~d~g~y~C~~~n~~g~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~  181 (245)
                      |.|.++..+|.|.|.|.+.|..+.  ....+.+.+.+.+|..   .....++.+.|.|.+   .+. |...+ .|++..+
T Consensus        86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~~---~~v~~G~~v~L~C~~~~~~~~-p~~~v-~W~~~~~  160 (268)
T 3mj6_A           86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRD---LRVRVGDTTQMRCSIQSTEEK-RVTKV-NWMFSSG  160 (268)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECCCCSE---EEEETTCCEEECCBCEESSSS-CCCEE-EEEEECT
T ss_pred             EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEeccCCCc---cccccCCcEEEEEEecCCCCC-Cccce-EEEecCC
Confidence            999999999999999999987543  3456666666555542   234678899999998   333 32233 3444322


Q ss_pred             CC-CCeEEEe----------eCCCCCC-------CcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEe
Q psy12131        182 EL-TPWRNIV----------IPSDGSL-------AGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       182 ~~-~~~~~~~----------~~~~~~~-------~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~  239 (245)
                      .. ..-..+.          .......       ........+.|.++...+.+.|+|.|.|..|....+..+.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~  236 (268)
T 3mj6_A          161 SHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVV  236 (268)
T ss_dssp             TCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEE
Confidence            00 0111000          0000000       000123578899999999999999999988876555555553

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.60  E-value=1e-14  Score=105.67  Aligned_cols=130  Identities=17%  Similarity=0.202  Sum_probs=87.7

Q ss_pred             cceEEEee---cceEEEeccCCCCCEEEEEEEEcCCCC---ceeeEEEEEEec------CCeEEee-cceEEecCCCeEE
Q psy12131          2 KEIELLYN---RESLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIY------PPEVSVE-KQWIHTAPDMRAE   68 (245)
Q Consensus         2 ~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~   68 (245)
                      +|+.+..+   ..+|.|.+++.+|+|.|+|.+.+..+.   .......|.|..      +|.+... +....+..|+.+.
T Consensus        65 ~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~  144 (246)
T 4dzb_B           65 DKFLINHASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKAT  144 (246)
T ss_dssp             GGEEEEEEETTEEEEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEE
T ss_pred             CcEEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEE
Confidence            46666542   346999999999999999999975431   123445677763      5555433 2233345699999


Q ss_pred             EEEEEeecCCC--eEEEEECCEEeccCCcEEEEe-------cCc----eeEEEEccCCCCC-CeEEEEEEEeCCcee
Q psy12131         69 IICNVYANPPA--KVEWFRDGTAITLGGRIDMHV-------SSE----KHSLLVRHIKDTD-FGNYMCQASNNLGSS  131 (245)
Q Consensus        69 l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~-------~~~----~~~l~i~~~~~~d-~g~y~C~~~n~~g~~  131 (245)
                      |.|.+.+.+++  .+.|++++..+..........       ...    .+.|.|.....+| .|.|+|.+.|.....
T Consensus       145 L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~  221 (246)
T 4dzb_B          145 LVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE  221 (246)
T ss_dssp             EEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred             EEEEEccCcCCceEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCC
Confidence            99999987654  899999998876532111000       011    1357888887777 999999999976443

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.60  E-value=1.3e-14  Score=104.68  Aligned_cols=129  Identities=16%  Similarity=0.239  Sum_probs=86.1

Q ss_pred             cceEEEee---cceEEEeccCCCCCEEEEEEEEcC--CCCceeeEEEEEEe------cCCeEEee-cceEEecCCCeEEE
Q psy12131          2 KEIELLYN---RESLDLDRVTLKLAGLYQCIASNN--IGESTSKNFIVNVI------YPPEVSVE-KQWIHTAPDMRAEI   69 (245)
Q Consensus         2 ~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~l   69 (245)
                      +|+.+..+   ..+|.|.+++.+|+|.|+|.+.+.  ..........|.|.      .+|.+... +....+..|+.+.|
T Consensus        63 ~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L  142 (240)
T 3q5y_A           63 SRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATL  142 (240)
T ss_dssp             TTEEEEECTTSCEEEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEE
T ss_pred             CeEEEEeCCCCEEEEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEE
Confidence            46666642   346999999999999999999832  22223344566766      34555432 22233456899999


Q ss_pred             EEEEee-cCCC-eEEEEECCEEeccCCcE----EEEecCc---eeEEEEccCCCCC-CeEEEEEEEeCCce
Q psy12131         70 ICNVYA-NPPA-KVEWFRDGTAITLGGRI----DMHVSSE---KHSLLVRHIKDTD-FGNYMCQASNNLGS  130 (245)
Q Consensus        70 ~C~~~~-~~~~-~~~w~~~~~~~~~~~~~----~~~~~~~---~~~l~i~~~~~~d-~g~y~C~~~n~~g~  130 (245)
                      .|.+.+ .|.+ .+.|++++..+......    .....+.   .+.|.|......| .|.|+|.+.|....
T Consensus       143 ~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~  213 (240)
T 3q5y_A          143 VCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS  213 (240)
T ss_dssp             EEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EEEEeeEECCCeEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            999988 5556 79999999887653221    1111111   2358888888778 67999999987543

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.59  E-value=1.4e-13  Score=99.64  Aligned_cols=175  Identities=11%  Similarity=0.124  Sum_probs=105.0

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecC-----CCeEEEEECC--E--E-ec---------cCCcEEEEecCceeEEEEccC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANP-----PAKVEWFRDG--T--A-IT---------LGGRIDMHVSSEKHSLLVRHI  112 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~-----~~~~~w~~~~--~--~-~~---------~~~~~~~~~~~~~~~l~i~~~  112 (245)
                      +...+..+.+.+|+.+.|.|.+.+.+     .+.+.|++..  .  . +.         ...++.+...+....|.|.++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   83 (247)
T 1svz_A            4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   83 (247)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCC
Confidence            34455677889999999999998887     6899999832  1  1 11         134565554555678999999


Q ss_pred             CCCCCeEEEEEEEeCCce-eE--EEEEEEecCC----------CCcc-c--cCccccCCCeeEEEEEeCCCCCceEEEEE
Q psy12131        113 KDTDFGNYMCQASNNLGS-SQ--QFIQLSGIPN----------IPVF-Q--KSSRRLGPDGYRLVWQVDTYSGIIQYLLK  176 (245)
Q Consensus       113 ~~~d~g~y~C~~~n~~g~-~~--~~~~~~~~~~----------~p~~-~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  176 (245)
                      +.+|.|.|.|.+.|..+. ..  ..+.+...+.          ++.. .  .......++.+.|.|...+.++......|
T Consensus        84 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W  163 (247)
T 1svz_A           84 EAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHW  163 (247)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEE
T ss_pred             CHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEE
Confidence            999999999999987543 11  2333332211          2211 1  11235778999999999665322123446


Q ss_pred             EEeec-CCCCeEEEeeCCC---------CCCC-----cceeeeEEEecCCCCCceEEEEEEEEec
Q psy12131        177 FRERE-ELTPWRNIVIPSD---------GSLA-----GPIYTQSYNITGLQLFTQYEASVLAKNR  226 (245)
Q Consensus       177 ~~~~~-~~~~~~~~~~~~~---------~~~~-----~~~~~~~~~i~~l~~~~~y~~~v~a~N~  226 (245)
                      |+... ....+........         ....     .......+.|.++...+.+.|.|.|.|.
T Consensus       164 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          164 VKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            66532 0111110000000         0000     0111257999999999999999999995

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.59  E-value=7e-15  Score=106.29  Aligned_cols=136  Identities=13%  Similarity=0.081  Sum_probs=86.8

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCC-C-----ceeeEEEEEEecC-------CeEEee-cceEEecC
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIG-E-----STSKNFIVNVIYP-------PEVSVE-KQWIHTAP   63 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~-~-----~~~~~~~l~v~~~-------p~~~~~-~~~~~~~~   63 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|.|.+.+... .     .....+.|.|...       |.+... +....+..
T Consensus        67 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~  146 (242)
T 1hxm_B           67 GKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKL  146 (242)
T ss_dssp             TSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGS
T ss_pred             CeEEEEecCCCcEEEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhccc
Confidence            56777642    45799999999999999999997531 1     1123457777753       333222 22223456


Q ss_pred             CCeEEEEEEEeec-CC-CeEEEEECCE-EeccCCc-EEEEecC---ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         64 DMRAEIICNVYAN-PP-AKVEWFRDGT-AITLGGR-IDMHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        64 g~~~~l~C~~~~~-~~-~~~~w~~~~~-~~~~~~~-~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      |+.+.|.|.+.+. |. +.+.|++++. .+..... ......+   ..+.|.|..... + |.|+|.+.|..+.......
T Consensus       147 g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~  224 (242)
T 1hxm_B          147 QKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQE  224 (242)
T ss_dssp             SSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEE
T ss_pred             CCCceEEEEEeeEECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeE
Confidence            9999999999986 54 6999999886 4432110 0011111   124677876654 4 9999999998876544444


Q ss_pred             EEe
Q psy12131        137 LSG  139 (245)
Q Consensus       137 ~~~  139 (245)
                      +.+
T Consensus       225 ~~~  227 (242)
T 1hxm_B          225 IIF  227 (242)
T ss_dssp             EEE
T ss_pred             eec
Confidence            444

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.59  E-value=1.7e-15  Score=106.96  Aligned_cols=119  Identities=12%  Similarity=0.099  Sum_probs=81.5

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEE--EEecCCeEEeecceEEecCCCeEEEEEEEeec-CC-CeEEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIV--NVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN-PP-AKVEWFR   85 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~w~~   85 (245)
                      +.|.|.+++.+|+|.|+|.|.+..+.. ..+.+.+  .+..+|.+...+.......|+.+.|.|.+.|. |. +.+.|++
T Consensus        68 ~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k  147 (207)
T 2vol_A           68 SELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWES  147 (207)
T ss_dssp             EEEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEEEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEE
Confidence            469999999999999999999987752 2344444  45578887665543333468999999999985 44 3899999


Q ss_pred             CCEEeccCCcEE-EEecCc----eeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         86 DGTAITLGGRID-MHVSSE----KHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        86 ~~~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      ++..+....... ....+.    .+.|.|......|.|.|+|.+.|...
T Consensus       148 ~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          148 NGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             TTEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             CCEeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence            998764321111 111111    12455655555678999999999754

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.59  E-value=3.6e-13  Score=96.93  Aligned_cols=173  Identities=13%  Similarity=0.096  Sum_probs=102.4

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--CEEe---------------ccCCcEEEEe-cCceeEEEEccCC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GTAI---------------TLGGRIDMHV-SSEKHSLLVRHIK  113 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~~~---------------~~~~~~~~~~-~~~~~~l~i~~~~  113 (245)
                      +...+..+.+.+|+.+.|.|. .+.+.+.+.|+++  +...               ....++.+.. ......|.|.+++
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~   81 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT   81 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence            344566778899999999999 7788899999984  2110               1123454443 2345689999999


Q ss_pred             CCCCeEEEEEEEeCCcee-----EEEEEEEecCCCC-----------cccc---CccccCCCeeEEEEEeCCCCCceEEE
Q psy12131        114 DTDFGNYMCQASNNLGSS-----QQFIQLSGIPNIP-----------VFQK---SSRRLGPDGYRLVWQVDTYSGIIQYL  174 (245)
Q Consensus       114 ~~d~g~y~C~~~n~~g~~-----~~~~~~~~~~~~p-----------~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~  174 (245)
                      .+|.|.|.|.+.|..|..     .....+.+...++           .+..   ......++.+.|.|.+.+.++.  ..
T Consensus        82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~--~i  159 (238)
T 2p1y_A           82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFD--YF  159 (238)
T ss_dssp             GGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCC--EE
T ss_pred             cccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCC--cE
Confidence            999999999999875421     1122333322221           1111   1235678999999999665432  34


Q ss_pred             EEEEeec-CCCCeEEEeeCCC----CCCC-----cceeeeEEEecCCCCCceEEEEEEEEecC
Q psy12131        175 LKFRERE-ELTPWRNIVIPSD----GSLA-----GPIYTQSYNITGLQLFTQYEASVLAKNRF  227 (245)
Q Consensus       175 ~~~~~~~-~~~~~~~~~~~~~----~~~~-----~~~~~~~~~i~~l~~~~~y~~~v~a~N~~  227 (245)
                      .|+++.. ....+........    ....     .......+.|.++...+.+.|.|.|.|..
T Consensus       160 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          160 PWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            4565532 1111111000000    0000     00112579999999999999999999983

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.59  E-value=1.3e-13  Score=108.45  Aligned_cols=217  Identities=17%  Similarity=0.152  Sum_probs=127.9

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEee-c-C------CCeE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA-N-P------PAKV   81 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~-~------~~~~   81 (245)
                      .+.|+|.+++..|+|.|.|.+.+  +. ....+.|.|..+|....... .......  .+.|.-.. . .      ...+
T Consensus       250 ~~~L~I~nl~~sd~g~y~~~C~~--~~-~i~~~~l~v~~pP~~P~nl~-C~~~~~~--svtcsW~pg~~~~l~G~~~t~Y  323 (488)
T 2q7n_A          250 TVAIHILNIPVSENSGTNIIFIT--DD-DVYGTVVFAGYPPDVPQKLS-CETHDLK--EIICSWNPGRITGLVGPRNTEY  323 (488)
T ss_dssp             CEEEECCSCCCCCSSCEEEEEEE--SS-CEEEEEEEEECCCCCCCSCE-EEBSSSS--EEEEEECCCSCCCCCTTSSCEE
T ss_pred             EEEEEEeCCCcccCCcEEEEEEc--CC-eEEEEEEEeeCCCCCCcccE-EEEcCCC--EEEEEEeCCCcCCCCCCCceeE
Confidence            35699999999999998887763  22 34467778877776432221 1111223  33444321 1 1      1122


Q ss_pred             EEE--ECCEE--eccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE----ecCCCCccccCcccc
Q psy12131         82 EWF--RDGTA--ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS----GIPNIPVFQKSSRRL  153 (245)
Q Consensus        82 ~w~--~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~----~~~~~p~~~~~~~~~  153 (245)
                      ..+  ..+..  ......    ..+....+.+..........+.+.|.|..|.....+.+.    ++|.||...... ..
T Consensus       324 ~L~y~~~g~~~~c~~~~~----~~~~~~~ct~~l~~~~t~Y~f~V~A~N~~G~~~S~~~~~~~~~v~P~PP~nl~v~-~~  398 (488)
T 2q7n_A          324 TLFESISGKSAVFHRIEG----LTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSLKVK-DI  398 (488)
T ss_dssp             EEEETTTCCEEEEECSSC----CCSSCEEEEEECCSSCCCCEEEEEEEETTEEEEEEEECCGGGTBCCCCCEEEEEE-EC
T ss_pred             EEEEEECCCCCCCccccc----cCCceEEEEEcCCCCccEEEEEEEEEeCCCCccceEEEEecCCCCCCCCeEEEEE-ec
Confidence            221  11111  000000    001223444543333466788999999998854432222    346677655432 24


Q ss_pred             CCCeeEEEEEeC--CCCCceEEEEEEEeecCCCCeEE-EeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC-
Q psy12131        154 GPDGYRLVWQVD--TYSGIIQYLLKFREREELTPWRN-IVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW-  229 (245)
Q Consensus       154 ~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~-  229 (245)
                      ....+.|+|.++  .++.++.|.+.|+... ...|.. .......     .....+.+.+|.+++.|.|+|+|.| .|. 
T Consensus       399 s~~sl~LsW~pP~~~~g~~l~YeV~Yr~~~-~~~w~~~~~~~~~~-----~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G  471 (488)
T 2q7n_A          399 NSTVVTFSWYLPGNFTKINLLCQIEICKAN-SKKEVRNATIRGAE-----DSTYHVAVDKLNPYTAYTFRVRCSS-KTFW  471 (488)
T ss_dssp             STTCEEEEEEEEEECSSSEEEEEEEEBCTT-SCCEEEEEEEECCE-----EEEEEEEECSCCSSCCBBCCEEEEE-SSCS
T ss_pred             CCCEEEEEEeCCCCCCCcceEEEEEEEECC-CCCceEEEEEecCC-----CcEEEEEeCCCCCCceEEEEEEEEE-CCCC
Confidence            677899999984  3457789999999865 445632 2221110     0113338999999999999999999 887 


Q ss_pred             --CCCCcceEEecCCCC
Q psy12131        230 --SRPSKAYVFATEGAE  244 (245)
Q Consensus       230 --~~~s~~~~~~t~~~~  244 (245)
                        |++|..+.++|.+.+
T Consensus       472 ~WS~WS~~v~~~T~e~a  488 (488)
T 2q7n_A          472 KWSRWSDEKRHLTTEAT  488 (488)
T ss_dssp             SCCCCCCCCCBCCCCCC
T ss_pred             CCCCCcCCEeEECCCCC
Confidence              689999999998764

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.59  E-value=8.8e-14  Score=104.91  Aligned_cols=166  Identities=17%  Similarity=0.160  Sum_probs=106.4

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecC-CCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      +..++..+.+..|.++.|.|.+.+.+ .+.+.|++++..+..... ....  ....|.|.++...|.|.|+|..   .|.
T Consensus         9 ~~~p~~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~-~~~~--~~~~L~i~~v~~~d~G~Y~C~~---~g~   82 (325)
T 1n26_A            9 QEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPS-RWAG--MGRRLLLRSVQLHDSGNYSCYR---AGR   82 (325)
T ss_dssp             CCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCE-EEEE--ESSEEEECSCCGGGCEEEEEES---SSS
T ss_pred             cccCCCcEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCcccc-cccc--ccceEEecccchhhCeEeEEEe---CCE
Confidence            33445555567999999999998755 679999997765422221 1111  2357999999999999999993   444


Q ss_pred             eEEEEEEE--ecCCCCccccCccccCCCeeEEEEEeCCC-CCceEEEEEEEeec--CCCCe-EEEee-CCCCCCCcceee
Q psy12131        131 SQQFIQLS--GIPNIPVFQKSSRRLGPDGYRLVWQVDTY-SGIIQYLLKFRERE--ELTPW-RNIVI-PSDGSLAGPIYT  203 (245)
Q Consensus       131 ~~~~~~~~--~~~~~p~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~--~~~~~-~~~~~-~~~~~~~~~~~~  203 (245)
                      ....+.|.  ..|..|. ...........+.+.|.+..+ .+...|.+.|+...  ....| ..+.. ....       .
T Consensus        83 ~~~~~~L~V~~pP~~P~-l~c~~~~~~~~~~c~W~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~c~~~~~~~-------~  154 (325)
T 1n26_A           83 PAGTVHLLVDVPPEEPQ-LSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQ-------K  154 (325)
T ss_dssp             CSCEEEEEECCCCCCCC-CEEEBSSTTSCEEEEECCSSCCCTTCEEEEEEEEESSSSCEEEEEEEEEETTTT-------E
T ss_pred             EeeeEEEEeccCCCCCc-eeEEeecCCCcEEEEECCCCCCCCCceEEEEEEEccCCCCCcccccCCCCCCCC-------C
Confidence            44444444  4455554 221111235589999997432 24478988887642  11222 23321 1111       2


Q ss_pred             eEEEecCCC-CCceEEEEEEEEecCCCCC
Q psy12131        204 QSYNITGLQ-LFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       204 ~~~~i~~l~-~~~~y~~~v~a~N~~G~~~  231 (245)
                      ..+.+..+. +...|.|+|.|.|..|.+.
T Consensus       155 ~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~  183 (325)
T 1n26_A          155 FSCQLAVPEGDSSFYIVSMCVASSVGSKF  183 (325)
T ss_dssp             EEEEECCCTTCCCEEEEEEEEEETTEEEE
T ss_pred             EEEEECCCcccCcEEEEEEEEEcCCCCcc
Confidence            567887775 7899999999999999874

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.59  E-value=4.5e-14  Score=88.00  Aligned_cols=82  Identities=22%  Similarity=0.289  Sum_probs=66.8

Q ss_pred             cCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEE--Eec---CceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         62 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM--HVS---SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        62 ~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      ..+..+.|.|.+.|.|.|.+.|++++..+........  ...   ...+.|.|.++..+|.|.|+|.|.|..|.....+.
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   93 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence            4678899999999999999999999998887654322  111   12346999999999999999999999999999988


Q ss_pred             EEecCCC
Q psy12131        137 LSGIPNI  143 (245)
Q Consensus       137 ~~~~~~~  143 (245)
                      |.+...|
T Consensus        94 l~V~~~P  100 (103)
T 1wwb_X           94 AHFMGWP  100 (103)
T ss_dssp             ECCSCCC
T ss_pred             EEECCCC
Confidence            8876443

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.59  E-value=5.3e-14  Score=99.57  Aligned_cols=174  Identities=13%  Similarity=0.101  Sum_probs=103.4

Q ss_pred             cceEEecCCCeEEEEEEEeecCCC---eEEEEECCEEeccC------------------CcEEEEe---cCceeEEEEcc
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPPA---KVEWFRDGTAITLG------------------GRIDMHV---SSEKHSLLVRH  111 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~~---~~~w~~~~~~~~~~------------------~~~~~~~---~~~~~~l~i~~  111 (245)
                      +..+.+..|+.+.|.|.+.+.+.+   .+.|++++......                  .++....   .....+|.|.+
T Consensus         6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   85 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN   85 (218)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred             CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence            446778899999999999988776   48999866432211                  0111100   11235799999


Q ss_pred             CCCCCCeEEEEEEEeCCceeEE-EEEEEecC-CCCccc--cCccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeE
Q psy12131        112 IKDTDFGNYMCQASNNLGSSQQ-FIQLSGIP-NIPVFQ--KSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWR  187 (245)
Q Consensus       112 ~~~~d~g~y~C~~~n~~g~~~~-~~~~~~~~-~~p~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (245)
                      +..+|.|.|.|.+.+..+.... ...+.+.. .++...  .......+..+.+.|.+.+.+++ . ..|+++.. .....
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p-~-i~W~~~~~-~~~~~  162 (218)
T 4frw_A           86 AVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAP-S-VTWDTEVK-GTTSS  162 (218)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCC-E-EEEEESSC-CEEEE
T ss_pred             ccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCc-e-EEEEECCc-ccccC
Confidence            9999999999999886654333 33333222 222211  12334567789999998665443 2 23455432 11111


Q ss_pred             EEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcce
Q psy12131        188 NIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAY  236 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~  236 (245)
                      .......    .......|.|..+...+...|+|.|.|..|.......+
T Consensus       163 ~~~~~~~----~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~  207 (218)
T 4frw_A          163 RSFKHSR----SAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITH  207 (218)
T ss_dssp             EEEECSS----SEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEE
T ss_pred             ceEecCC----cEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEE
Confidence            1111111    11123468888888877778888899999987654443

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.58  E-value=5.5e-15  Score=102.50  Aligned_cols=142  Identities=9%  Similarity=0.125  Sum_probs=95.4

Q ss_pred             EecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEcc-CCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131         60 HTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRH-IKDTDFGNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      ....|+.+.|.|.+.+ + +.+.|++++..+...         ....|.|.+ +..+|.|.|+|.|.|..|.....+.+.
T Consensus        10 v~~~G~~v~L~C~~~~-~-~~i~W~k~g~~l~~~---------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~   78 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-D-ENLKWEKNGQELPQK---------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKAR   78 (186)
T ss_dssp             EEEETTEEEEECSSCC-C-TTCEEEETTEEECSC---------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCC
T ss_pred             EEeCCcEEEEEEeCCC-C-CceEEEECCEECCCC---------CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEE
Confidence            3467999999999987 4 349999999988753         123699999 999999999999999988755555444


Q ss_pred             ecCCCCc-----------------cccC----------ccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEee
Q psy12131        139 GIPNIPV-----------------FQKS----------SRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVI  191 (245)
Q Consensus       139 ~~~~~p~-----------------~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (245)
                      +....+.                 +...          .....++.+.|.|.+  ..|.   ..|+++..      .+..
T Consensus        79 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~--p~p~---i~W~k~g~------~i~~  147 (186)
T 1jbj_A           79 VGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL--TDKT---IKWLKDGS------IISP  147 (186)
T ss_dssp             CCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS--SCSC---EEEEETTE------ECCC
T ss_pred             EecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC--CCCe---EEEEECCE------ECcc
Confidence            3211110                 0000          112378899999998  2232   22455433      0100


Q ss_pred             CCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        192 PSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       192 ~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      ...       ....+.|.++...+.+.|+|.|.|..|..
T Consensus       148 ~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          148 LNA-------TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             SSC-------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             cCC-------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            000       11457778888999999999999999865

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.3e-14  Score=91.73  Aligned_cols=93  Identities=24%  Similarity=0.297  Sum_probs=76.0

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEecc-CCcEEEEec-CceeEEEEccCCCCCCeEEEEEEE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+.. ..++.+... .....|.|.++..+|.|.|.|.+.
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm2_A            7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAA   86 (110)
T ss_dssp             CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEE
T ss_pred             CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEE
Confidence            467777777778889999999999999999999999999988765 445655543 344589999999999999999999


Q ss_pred             eCCceeEEEEEEEec
Q psy12131        126 NNLGSSQQFIQLSGI  140 (245)
Q Consensus       126 n~~g~~~~~~~~~~~  140 (245)
                      |..|.....+.|.+.
T Consensus        87 N~~g~~~~~~~l~V~  101 (110)
T 2dm2_A           87 NPQGRISCTGRLMVQ  101 (110)
T ss_dssp             CTTCCEEECCCEEEE
T ss_pred             ECCCeEEEEEEEEEE
Confidence            999987776555554

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.58  E-value=4.6e-14  Score=100.41  Aligned_cols=176  Identities=10%  Similarity=0.002  Sum_probs=99.5

Q ss_pred             eEEecCCCeEEEEEEEeecCCC---eEEEEECCEEecc----------------CCcEEE-------EecCceeEEEEcc
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA---KVEWFRDGTAITL----------------GGRIDM-------HVSSEKHSLLVRH  111 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~---~~~w~~~~~~~~~----------------~~~~~~-------~~~~~~~~l~i~~  111 (245)
                      .+.+..|+.+.|.|.+.+.+.+   .+.|++++..+..                ..+...       .......+|.|.+
T Consensus        10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   89 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG   89 (225)
T ss_dssp             EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred             EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence            3567789999999999887766   4899997543210                011111       0112345799999


Q ss_pred             CCCCCCeEEEEEEEeCCceeEEE-EEEEecCCCCc--cccCccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEE
Q psy12131        112 IKDTDFGNYMCQASNNLGSSQQF-IQLSGIPNIPV--FQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRN  188 (245)
Q Consensus       112 ~~~~d~g~y~C~~~n~~g~~~~~-~~~~~~~~~p~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (245)
                      ++.+|.|.|.|.+.|..+..... ..+.+...++.  .........+..+.+.|...+..|... ..|+++.........
T Consensus        90 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~-~~w~~~~~~~~~~~~  168 (225)
T 4fmk_A           90 LRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPAR-ITWISSLGGEAKDTQ  168 (225)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCE-EEEECSSCCEEEEEE
T ss_pred             CCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCE-EEEEECCccccCCcc
Confidence            99999999999999876654433 23333222221  222233355667777777633323222 224443221111111


Q ss_pred             EeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceE
Q psy12131        189 IVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYV  237 (245)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~  237 (245)
                      ......+   .......|.|..+...+...|+|.|.|..|....+..+.
T Consensus       169 ~~~~~~~---~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~  214 (225)
T 4fmk_A          169 EPGIQAG---TVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVT  214 (225)
T ss_dssp             EECSSTT---CEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEE
T ss_pred             eEEecCC---CEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEE
Confidence            1111111   111124578888877777777788999998876555443

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1e-14  Score=90.40  Aligned_cols=91  Identities=19%  Similarity=0.303  Sum_probs=75.0

Q ss_pred             EecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         46 VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        46 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      +..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+......   .......|.|.++..+|.|.|.|.+.
T Consensus         8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~   84 (99)
T 2yr3_A            8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARST---CEAGVAELHIQDALPEDHGTYTCLAE   84 (99)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCE---EETTEEEEEECSCCTTCCBCEEEEEE
T ss_pred             cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceE---eeCCeEEEEECCCChhhCEEEEEEEE
Confidence            445788877777888999999999999999999999999999877654332   22345689999999999999999999


Q ss_pred             eCCceeEEEEEEEe
Q psy12131        126 NNLGSSQQFIQLSG  139 (245)
Q Consensus       126 n~~g~~~~~~~~~~  139 (245)
                      |..|.....+.|.+
T Consensus        85 N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           85 NALGQVSCSAWVTV   98 (99)
T ss_dssp             CSSCEEEEECCEEE
T ss_pred             ECCCeEEEEEEEEE
Confidence            99998777766654

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.58  E-value=2e-14  Score=87.66  Aligned_cols=79  Identities=16%  Similarity=0.153  Sum_probs=68.9

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +|.+...+....+.+|+.+.|.|.+.+ +.+.+.|++++..+....++.+...+....|.|.++..+|.|.|+|.+.|..
T Consensus         5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T 1waa_A            5 LIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANTK   83 (93)
T ss_dssp             CCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETTEE
T ss_pred             CcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECCCc
Confidence            566777777888999999999999975 5578999999999988888888777777899999999999999999999853

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1.8e-14  Score=89.45  Aligned_cols=91  Identities=21%  Similarity=0.368  Sum_probs=74.4

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEecc-CCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      .+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+.. ..++.+.   ....|.|.++..+|.|.|.|.+.|
T Consensus         7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n   83 (100)
T 2edj_A            7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ---EQGTLQIKNLRISDTGTYTCVATS   83 (100)
T ss_dssp             SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEEC---TTCCEEEESCCTTTCCEEEEEEEC
T ss_pred             CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEc---CCCEEEEccCCcccCEEEEEEEEc
Confidence            467777777778889999999999999999999999999987763 3344332   234799999999999999999999


Q ss_pred             CCceeEEEEEEEecC
Q psy12131        127 NLGSSQQFIQLSGIP  141 (245)
Q Consensus       127 ~~g~~~~~~~~~~~~  141 (245)
                      ..|.....+.|.+..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (100)
T 2edj_A           84 SSGETSWSAVLDVTE   98 (100)
T ss_dssp             SSCCCBCCEEEEEES
T ss_pred             CCCCEEEEEEEEEec
Confidence            999887777776653

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.58  E-value=2.5e-14  Score=90.80  Aligned_cols=102  Identities=18%  Similarity=0.291  Sum_probs=82.0

Q ss_pred             eeeEEEEEEec-CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCC
Q psy12131         38 TSKNFIVNVIY-PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTD  116 (245)
Q Consensus        38 ~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d  116 (245)
                      .+..+.|.|.. +|.+...+....+.+|+.+.|.|.+.+.  |.+.|++++..+....++.+...+....|.|.++..+|
T Consensus         7 ~~~~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D   84 (113)
T 2edh_A            7 GRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAED   84 (113)
T ss_dssp             CCCCCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTT
T ss_pred             CcEEEEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhh
Confidence            46667788875 4577777777889999999999999764  78999999998887788888777777799999999999


Q ss_pred             CeEEEEEEEeCCceeEEEEEEEecCCCCc
Q psy12131        117 FGNYMCQASNNLGSSQQFIQLSGIPNIPV  145 (245)
Q Consensus       117 ~g~y~C~~~n~~g~~~~~~~~~~~~~~p~  145 (245)
                      .|.|.|.+    +.....+.|.+...|..
T Consensus        85 ~G~Y~C~a----~~~~~~~~l~V~~~p~~  109 (113)
T 2edh_A           85 AGEYLCMC----GKERTSAMLTVRAMPSG  109 (113)
T ss_dssp             CEEEEEEE----TTEEEEEEEEECCCCCS
T ss_pred             CEEEEEEe----CCCCEEEEEEEeCCCCC
Confidence            99999999    44555666666654443

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.58  E-value=5.4e-15  Score=107.61  Aligned_cols=129  Identities=14%  Similarity=0.144  Sum_probs=72.4

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCCC------------ceeeEEEEEEec----CCeEEeecceEEe
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIGE------------STSKNFIVNVIY----PPEVSVEKQWIHT   61 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~~------------~~~~~~~l~v~~----~p~~~~~~~~~~~   61 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|.|.+.+..|.            .......|.|..    +|.+........+
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~  145 (257)
T 3bn9_D           66 GRFTISRDNSKNTLYLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKS  145 (257)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC----
T ss_pred             CceEEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccc
Confidence            46666643    357999999999999999999987541            011335777764    4655443323335


Q ss_pred             cCCCeEEEEEEEeec-CCC-eEEEEECCEEeccCCcEEEEecCc----eeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131         62 APDMRAEIICNVYAN-PPA-KVEWFRDGTAITLGGRIDMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus        62 ~~g~~~~l~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g~~  131 (245)
                      ..|+.+.|.|.+.+. |.| .+.|++++..+.......+...+.    .+.|.|......+ |.|+|.+.|.....
T Consensus       146 ~~g~~v~L~C~~~g~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~  220 (257)
T 3bn9_D          146 TSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  220 (257)
T ss_dssp             -------CCCEEEEEBSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTE
T ss_pred             cCCCcEEEEEEEeeEECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCc
Confidence            679999999999985 777 999999886532110000111111    2356777777667 99999999965443

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.58  E-value=3.4e-13  Score=98.17  Aligned_cols=170  Identities=15%  Similarity=0.125  Sum_probs=102.4

Q ss_pred             ceEEecCCCeEEEEEEEeec--CCCeEEEEECC--EE---ec---------cCCcEEEEecCceeEEEEccCCCCCCeEE
Q psy12131         57 QWIHTAPDMRAEIICNVYAN--PPAKVEWFRDG--TA---IT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNY  120 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~--~~~~~~w~~~~--~~---~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  120 (245)
                      ....+.+|+.+.|.|.+.+.  +.+.+.|++..  ..   +.         ...++.+...+....|.|.+++.+|.|.|
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y   89 (256)
T 3ux9_B           10 PSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADY   89 (256)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEE
Confidence            34678899999999999876  67899999832  11   10         22456555555567899999999999999


Q ss_pred             EEEEEeCCce---eEEEEEEEecCCC--------------------Ccccc--CccccCCCeeEEEEEeCCCCCceEEEE
Q psy12131        121 MCQASNNLGS---SQQFIQLSGIPNI--------------------PVFQK--SSRRLGPDGYRLVWQVDTYSGIIQYLL  175 (245)
Q Consensus       121 ~C~~~n~~g~---~~~~~~~~~~~~~--------------------p~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~  175 (245)
                      .|.+.+..+.   ......|.+...+                    +.+..  ......++.+.|.|...+.++......
T Consensus        90 ~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~  169 (256)
T 3ux9_B           90 YCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMS  169 (256)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEE
T ss_pred             EEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccEEE
Confidence            9999986532   1122333332211                    01111  123567899999999965432222344


Q ss_pred             EEEeec-CCCCeEEEeeCCC-----------CC---CCcceeeeEEEecCCCCCceEEEEEEEEec
Q psy12131        176 KFRERE-ELTPWRNIVIPSD-----------GS---LAGPIYTQSYNITGLQLFTQYEASVLAKNR  226 (245)
Q Consensus       176 ~~~~~~-~~~~~~~~~~~~~-----------~~---~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~  226 (245)
                      |+++.. ....+........           ..   .........+.|.++...+.+.|.|.|.|.
T Consensus       170 W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  235 (256)
T 3ux9_B          170 WVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYID  235 (256)
T ss_dssp             EEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcC
Confidence            666532 1111110000000           00   000011356999999999999999999996

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.58  E-value=3.8e-14  Score=102.56  Aligned_cols=129  Identities=18%  Similarity=0.242  Sum_probs=86.0

Q ss_pred             cceEEEee---cceEEEeccCCCCCEEEEEEEEcCC---CCceeeEEEEEEe------cCCeEEee-cceEEecCCCeEE
Q psy12131          2 KEIELLYN---RESLDLDRVTLKLAGLYQCIASNNI---GESTSKNFIVNVI------YPPEVSVE-KQWIHTAPDMRAE   68 (245)
Q Consensus         2 ~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~   68 (245)
                      +|+.+...   ..+|.|.+++.+|+|.|+|.+.+..   .........|.|.      .+|.+... +....+..|+.+.
T Consensus        64 ~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~  143 (245)
T 4ei6_B           64 DQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKAT  143 (245)
T ss_dssp             TTEEEECCTTSCEEEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEE
T ss_pred             CCEEEEeccCceEEEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceE
Confidence            56777653   3369999999999999999999532   1123345567776      35554433 2223345689999


Q ss_pred             EEEEEeec-CCC-eEEEEECCEEeccCCcEEEEe-------cCc----eeEEEEccCCCCC-CeEEEEEEEeCCce
Q psy12131         69 IICNVYAN-PPA-KVEWFRDGTAITLGGRIDMHV-------SSE----KHSLLVRHIKDTD-FGNYMCQASNNLGS  130 (245)
Q Consensus        69 l~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~-------~~~----~~~l~i~~~~~~d-~g~y~C~~~n~~g~  130 (245)
                      |.|.+.+. |.+ .+.|++++..+..........       .+.    .+.|.|......| .|.|+|.+.|....
T Consensus       144 l~C~~~g~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~  219 (245)
T 4ei6_B          144 LVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (245)
T ss_dssp             EEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EEEEEeeEeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence            99999884 444 899999998876532111000       011    2357788777777 89999999996543

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.57  E-value=9.1e-13  Score=95.40  Aligned_cols=167  Identities=11%  Similarity=0.093  Sum_probs=102.1

Q ss_pred             eEEecCCCeEEEEEEEeecC--CCeEEEEECC--EEe-----------------ccCCcEEEEe--cCceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANP--PAKVEWFRDG--TAI-----------------TLGGRIDMHV--SSEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~~--~~~-----------------~~~~~~~~~~--~~~~~~l~i~~~~~  114 (245)
                      ...+.+|+.+.|.|.+.+.|  .+.+.|++..  ...                 ....++.+..  ......|.|.++..
T Consensus        11 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   90 (247)
T 2ghw_B           11 GGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA   90 (247)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCH
Confidence            46788999999999999877  5789999832  110                 1124555544  23457899999999


Q ss_pred             CCCeEEEEEEEeCCce--eEEEEEEEecCC--------------CCcccc---CccccCCCeeEEEEEeCCCCCceEEEE
Q psy12131        115 TDFGNYMCQASNNLGS--SQQFIQLSGIPN--------------IPVFQK---SSRRLGPDGYRLVWQVDTYSGIIQYLL  175 (245)
Q Consensus       115 ~d~g~y~C~~~n~~g~--~~~~~~~~~~~~--------------~p~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~  175 (245)
                      +|.|.|.|.+.|..+.  ......|.+...              ++.+..   ......++.+.|.|.+.+.++.  ...
T Consensus        91 ~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~--~v~  168 (247)
T 2ghw_B           91 EDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRS--NLA  168 (247)
T ss_dssp             GGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTT--CEE
T ss_pred             HHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccc--eEE
Confidence            9999999999997332  112234444322              222221   1235678999999999766543  234


Q ss_pred             EEEeecCCCCeEEEe-eC-----C-CCC--CCcceeeeEEEecCCCCCceEEEEEEEEecC
Q psy12131        176 KFREREELTPWRNIV-IP-----S-DGS--LAGPIYTQSYNITGLQLFTQYEASVLAKNRF  227 (245)
Q Consensus       176 ~~~~~~~~~~~~~~~-~~-----~-~~~--~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~  227 (245)
                      |++... +.....+. ..     . ...  .........+.|.++...+.+.|.|.|.|..
T Consensus       169 W~k~~~-g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~  228 (247)
T 2ghw_B          169 WYQQKP-GQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNW  228 (247)
T ss_dssp             EEEECT-TSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSS
T ss_pred             EEEECC-CCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCC
Confidence            565322 11110000 00     0 000  0001123568999999999999999999864

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.57  E-value=5.7e-14  Score=114.08  Aligned_cols=125  Identities=21%  Similarity=0.330  Sum_probs=88.5

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCe---EEeecceEEecCCC-eEEEEEEEee-cC
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE---VSVEKQWIHTAPDM-RAEIICNVYA-NP   77 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~---~~~~~~~~~~~~g~-~~~l~C~~~~-~~   77 (245)
                      |..+..++ +|.|.+++.+|+|.|+|.+.+..+......+.|.|..+|.   +.....  .+..+. .+.|.|.+.+ .|
T Consensus       425 r~~~~~~~-~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~--~~~~~~~~~~l~C~~~~~~P  501 (581)
T 3o3u_N          425 VARVLPNG-SLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSAS--ELTAGVPNKVGTCVSEGSYP  501 (581)
T ss_dssp             TSEECTTS-CEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCS--EECTTSCEEEEEEEEEEEBS
T ss_pred             cEEEcCCc-eEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCc--ccccCCceeEEEEECCCCCC
Confidence            44454444 6999999999999999999998887447788999987443   322222  234444 4567999988 59


Q ss_pred             CCeEEEEECCEEeccCC-cEEEEe------cC----ceeEEEEccCC-CCCCeEEEEEEEeCCce
Q psy12131         78 PAKVEWFRDGTAITLGG-RIDMHV------SS----EKHSLLVRHIK-DTDFGNYMCQASNNLGS  130 (245)
Q Consensus        78 ~~~~~w~~~~~~~~~~~-~~~~~~------~~----~~~~l~i~~~~-~~d~g~y~C~~~n~~g~  130 (245)
                      .|.+.|++++..+.... ...+..      ..    -.+.|.|..+. ..+.+.|+|.+.|..+.
T Consensus       502 ~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          502 AGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             CCEEEEEETTEECCTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             CCeEEEEECCEECCCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence            99999999999886533 222211      00    13578999888 44478999999998643

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.57  E-value=8.6e-16  Score=99.06  Aligned_cols=104  Identities=25%  Similarity=0.435  Sum_probs=84.8

Q ss_pred             eeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCe-EEEEECCEEecc--CCcEEEE--ecCc--eeEEEEc
Q psy12131         38 TSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAK-VEWFRDGTAITL--GGRIDMH--VSSE--KHSLLVR  110 (245)
Q Consensus        38 ~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~w~~~~~~~~~--~~~~~~~--~~~~--~~~l~i~  110 (245)
                      ..+.+.|.|..+|.+.. +....+.+|+.+.|.|.+.|.|.|. +.|++++..+..  ..++.+.  ....  .+.|.|.
T Consensus         3 ~~~~~~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~   81 (122)
T 2cry_A            3 SGSSGTLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTIS   81 (122)
T ss_dssp             SSCCCCCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECT
T ss_pred             cceEEEEEEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEc
Confidence            35667788999999888 6677788999999999999999986 999999887764  3455542  2122  5689999


Q ss_pred             cCCCCCC-eEEEEEEEeCCceeEEEEEEEecCC
Q psy12131        111 HIKDTDF-GNYMCQASNNLGSSQQFIQLSGIPN  142 (245)
Q Consensus       111 ~~~~~d~-g~y~C~~~n~~g~~~~~~~~~~~~~  142 (245)
                      ++...|. |.|.|.|.|..|.....+.|.+...
T Consensus        82 ~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~~  114 (122)
T 2cry_A           82 NIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS  114 (122)
T ss_dssp             TCCHHHHHSCEEEEEECSSCEEEEEECCCCSCS
T ss_pred             CCChhhCCceEEEEEECCCCeEEEEEEEEECCC
Confidence            9999998 9999999999999988888777643

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.57  E-value=3.5e-14  Score=90.88  Aligned_cols=98  Identities=24%  Similarity=0.351  Sum_probs=74.9

Q ss_pred             EEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecC----ceeEEEEccCCCCCCe
Q psy12131         43 IVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS----EKHSLLVRHIKDTDFG  118 (245)
Q Consensus        43 ~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g  118 (245)
                      .|.|..+|.+......   .......|.|.+.|.|.|.+.|++++..+............    ..+.|.|.++...|.|
T Consensus         2 ~L~V~~pP~i~~~~~~---~~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   78 (118)
T 1wwc_A            2 ALTVYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNG   78 (118)
T ss_dssp             --CCCCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCE
T ss_pred             EEEEecCCceeccCCC---eeccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCE
Confidence            5677788886554322   22366788999999999999999999988876654443211    3568999999999999


Q ss_pred             EEEEEEEeCCceeEEEEEEEecCCC
Q psy12131        119 NYMCQASNNLGSSQQFIQLSGIPNI  143 (245)
Q Consensus       119 ~y~C~~~n~~g~~~~~~~~~~~~~~  143 (245)
                      .|.|.|.|..|.....+.+.+...|
T Consensus        79 ~Y~C~a~N~~G~~~~~~~l~v~~~P  103 (118)
T 1wwc_A           79 NYTLIAKNPLGTANQTINGHFLKEP  103 (118)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSCCC
T ss_pred             EEEEEEECCCCeEeeEEEEEEccCC
Confidence            9999999999999998888776444

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.57  E-value=6.7e-13  Score=97.10  Aligned_cols=177  Identities=12%  Similarity=0.155  Sum_probs=108.3

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecC------CCeEEEEEC--CEE---ec---------cCCcEEEEecCceeEEEE
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANP------PAKVEWFRD--GTA---IT---------LGGRIDMHVSSEKHSLLV  109 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~------~~~~~w~~~--~~~---~~---------~~~~~~~~~~~~~~~l~i  109 (245)
                      +.+...+..+.+.+|+.+.|.|.+.+.+      .+.+.|++.  +..   +.         ...++.+........|.|
T Consensus         6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I   85 (264)
T 2gjj_A            6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTI   85 (264)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEE
Confidence            4455566677889999999999998877      578999984  221   11         134566554455678999


Q ss_pred             ccCCCCCCeEEEEEEEeCCcee---EEEEEEEecCC----------------CCc-cc--cCccccCCCeeEEEEEeCCC
Q psy12131        110 RHIKDTDFGNYMCQASNNLGSS---QQFIQLSGIPN----------------IPV-FQ--KSSRRLGPDGYRLVWQVDTY  167 (245)
Q Consensus       110 ~~~~~~d~g~y~C~~~n~~g~~---~~~~~~~~~~~----------------~p~-~~--~~~~~~~~~~~~l~~~~~~~  167 (245)
                      .+++.+|.|.|.|.+.+..+..   ...+.+...+.                ++. +.  .......++.+.|.|...+.
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~  165 (264)
T 2gjj_A           86 GSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGY  165 (264)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESS
T ss_pred             CCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCC
Confidence            9999999999999999875421   12333333220                111 11  11235678999999999665


Q ss_pred             CCceEEEEEEEeec-CCCCeEEEeeCCC---------CCCC-----cceeeeEEEecCCCCCceEEEEEEEEec
Q psy12131        168 SGIIQYLLKFRERE-ELTPWRNIVIPSD---------GSLA-----GPIYTQSYNITGLQLFTQYEASVLAKNR  226 (245)
Q Consensus       168 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~---------~~~~-----~~~~~~~~~i~~l~~~~~y~~~v~a~N~  226 (245)
                      ++......||++.. ....+........         ....     .......|.|.++...+...|.|.|.|.
T Consensus       166 ~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          166 SFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             CGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             ccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            43222445666542 1111111000000         0000     0012367999999999999999999996

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=2.3e-14  Score=89.41  Aligned_cols=94  Identities=20%  Similarity=0.339  Sum_probs=74.9

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .+|.+...+....+.+|+.+.|.|.+.+ +.+.+.|++++..+....++.+...+....|.|.++..+|.|.|.|.+.| 
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-   84 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA-   84 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS-
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc-
Confidence            3666767777788999999999999987 77899999999988877788877777778999999999999999999999 


Q ss_pred             CceeEEEEEEEecCCCC
Q psy12131        128 LGSSQQFIQLSGIPNIP  144 (245)
Q Consensus       128 ~g~~~~~~~~~~~~~~p  144 (245)
                       ......+.+...|.+|
T Consensus        85 -~~~~~~l~V~~~p~~~  100 (103)
T 2edf_A           85 -SKSTASLHVEEKASGP  100 (103)
T ss_dssp             -CEEEEEEEECCCSSSS
T ss_pred             -CCcEEEEEEeCCCCCC
Confidence             2333344444444433

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.56  E-value=3.4e-14  Score=87.27  Aligned_cols=86  Identities=23%  Similarity=0.422  Sum_probs=72.5

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +|.+...+....+.+|+.+.|.|.+.+.| |.+.|++++..+....++.+.    ...|.|.++..+|.|.|.|.+.|..
T Consensus         9 pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~   83 (95)
T 2ckn_A            9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT----GEEVEVRDSIPADSGLYACVTSSPS   83 (95)
T ss_dssp             SCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC----SSEEEESSCCGGGSEEEEEEEEETT
T ss_pred             CCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe----CCEEEECCCChHHCEEEEEEeccCC
Confidence            55666667778889999999999999987 899999999888766665543    4589999999999999999999999


Q ss_pred             ceeEEEEEEEe
Q psy12131        129 GSSQQFIQLSG  139 (245)
Q Consensus       129 g~~~~~~~~~~  139 (245)
                      |.....+.|.+
T Consensus        84 g~~~~~~~l~V   94 (95)
T 2ckn_A           84 GSDTTYFSVNV   94 (95)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CcEEEEEEEEE
Confidence            98888777664

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=1.5e-14  Score=91.42  Aligned_cols=93  Identities=20%  Similarity=0.349  Sum_probs=76.3

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEE-EecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+........ ........|.|.++..+|.|.|.|.+.|
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   87 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATN   87 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEEC
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEEC
Confidence            467777777788899999999999999999999999999988776554433 3333456899999999999999999999


Q ss_pred             CCceeEEEEEEEec
Q psy12131        127 NLGSSQQFIQLSGI  140 (245)
Q Consensus       127 ~~g~~~~~~~~~~~  140 (245)
                      ..|.....+.|.+.
T Consensus        88 ~~g~~~~~~~l~V~  101 (110)
T 2dm3_A           88 RAGQNSFSLELVVA  101 (110)
T ss_dssp             SSCEEEECCEEEEE
T ss_pred             CCCEEEEEEEEEEe
Confidence            99987776666554

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.56  E-value=4.1e-14  Score=88.27  Aligned_cols=89  Identities=24%  Similarity=0.385  Sum_probs=71.6

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCC--cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      +...+....+.+|+.+.|.|.+.+ +.+.+.|++++..+....  ++.+...+....|.|.++..+|.|.|.|.+.|  .
T Consensus        10 ~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n--~   86 (103)
T 1x44_A           10 VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG--G   86 (103)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT--E
T ss_pred             eeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC--C
Confidence            555666778889999999999977 678999999999988776  66777766778999999999999999999998  3


Q ss_pred             eeEEEEEEEecCCC
Q psy12131        130 SSQQFIQLSGIPNI  143 (245)
Q Consensus       130 ~~~~~~~~~~~~~~  143 (245)
                      .....+.+...|.|
T Consensus        87 ~~~~~l~V~~~p~p  100 (103)
T 1x44_A           87 QSSAKLSVDLKSGP  100 (103)
T ss_dssp             EEEEEEEEECCCSC
T ss_pred             cEEEEEEEeCCCCC
Confidence            44445555555444

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=2.7e-14  Score=89.26  Aligned_cols=93  Identities=15%  Similarity=0.270  Sum_probs=75.0

Q ss_pred             CCeEEeecce---EEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         49 PPEVSVEKQW---IHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        49 ~p~~~~~~~~---~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      +|.+...+..   +.+.+|+.+.|.|.+.+.+.+ +.|++++..+....++.+...+....|.|.++..+|.|.|.|.+.
T Consensus         7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   85 (104)
T 2e6p_A            7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTE   85 (104)
T ss_dssp             SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECS
T ss_pred             CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEEC
Confidence            5555555554   678899999999999999888 999999999887777777777777899999999999999999999


Q ss_pred             eCCceeEEEEEEEecCCCC
Q psy12131        126 NNLGSSQQFIQLSGIPNIP  144 (245)
Q Consensus       126 n~~g~~~~~~~~~~~~~~p  144 (245)
                      |..+  ...+.+...|.+|
T Consensus        86 n~~~--~~~l~V~~~P~pp  102 (104)
T 2e6p_A           86 GVSA--FFGVTVQDPSGPS  102 (104)
T ss_dssp             SCCC--CEEEEEECCCCSS
T ss_pred             CceE--EEEEEEcCCCCCc
Confidence            9744  4455555555554

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.56  E-value=1.3e-13  Score=100.26  Aligned_cols=180  Identities=12%  Similarity=0.120  Sum_probs=103.7

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecC-----CCeEEEEECC--EE---e---------ccCCcEEEEecCceeEEEE
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANP-----PAKVEWFRDG--TA---I---------TLGGRIDMHVSSEKHSLLV  109 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-----~~~~~w~~~~--~~---~---------~~~~~~~~~~~~~~~~l~i  109 (245)
                      .+.+...+..+.+.+|+.+.|.|.+.+.+     .+.+.|++++  ..   +         ....++.+...+....|.|
T Consensus        34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I  113 (252)
T 3bkj_L           34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI  113 (252)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence            34455556677889999999999998887     5899999843  11   1         0124555555555678999


Q ss_pred             ccCCCCCCeEEEEEEEeCCceeE---EEEEEEecCCCCccccC---ccccCCCeeEEEEEeCCCCCc-eEEEEEEEeec-
Q psy12131        110 RHIKDTDFGNYMCQASNNLGSSQ---QFIQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDTYSGI-IQYLLKFRERE-  181 (245)
Q Consensus       110 ~~~~~~d~g~y~C~~~n~~g~~~---~~~~~~~~~~~p~~~~~---~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-  181 (245)
                      .+++.+|.|.|.|.+.|..+...   ..+.+...+.+|.+...   .....+..+.|.|.+.+..|. .. ..|+++.. 
T Consensus       114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~-v~W~k~g~~  192 (252)
T 3bkj_L          114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDIN-VKWKIDGSE  192 (252)
T ss_dssp             SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCE-EEEEETTEE
T ss_pred             CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcE-EEEEECCee
Confidence            99999999999999998755221   23333332334443321   112356799999999653232 22 23455432 


Q ss_pred             CCCC-eEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        182 ELTP-WRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       182 ~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      .... .......... .........+.|......+...|.|.|.|.....
T Consensus       193 ~~~~~~~~~~~~~~~-~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          193 RQNGVLNSWTDQDSK-DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             ECSSEEEEECCCCTT-TCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred             cCCCeeeecCcccCC-CCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence            0111 1111000000 0000112346666665555566666699976543

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.55  E-value=1.6e-12  Score=94.72  Aligned_cols=171  Identities=12%  Similarity=0.105  Sum_probs=104.9

Q ss_pred             cceEEecCCCeEEEEEEEeecC--CCeEEEEEC--CEEe-----------------ccCCcEEEEec--CceeEEEEccC
Q psy12131         56 KQWIHTAPDMRAEIICNVYANP--PAKVEWFRD--GTAI-----------------TLGGRIDMHVS--SEKHSLLVRHI  112 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~--~~~~-----------------~~~~~~~~~~~--~~~~~l~i~~~  112 (245)
                      +....+.+|+.+.|.|.+.+.+  .+.+.|++.  +..+                 ....++.+...  .....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (256)
T 1nqb_A            7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSL   86 (256)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcC
Confidence            3456788999999999998875  579999983  2211                 01245555432  34678999999


Q ss_pred             CCCCCeEEEEEEEeCCce-----eEEEEEEEecCCCCcccc--CccccCCCeeEEEEEeCCCCCce---EEEEEEEeecC
Q psy12131        113 KDTDFGNYMCQASNNLGS-----SQQFIQLSGIPNIPVFQK--SSRRLGPDGYRLVWQVDTYSGII---QYLLKFREREE  182 (245)
Q Consensus       113 ~~~d~g~y~C~~~n~~g~-----~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~  182 (245)
                      +.+|.|.|.|.+.|..|.     ....+.|.+.+.+.....  ......++.+.|.|.+.+.++..   ....|++... 
T Consensus        87 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~-  165 (256)
T 1nqb_A           87 TSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKP-  165 (256)
T ss_dssp             CGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECT-
T ss_pred             ChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECC-
Confidence            999999999999998652     122345555544332221  12356789999999997664321   1234566421 


Q ss_pred             CCCeEEEee-CC----C-CCCC---cceeeeEEEecCCCCCceEEEEEEEEecC
Q psy12131        183 LTPWRNIVI-PS----D-GSLA---GPIYTQSYNITGLQLFTQYEASVLAKNRF  227 (245)
Q Consensus       183 ~~~~~~~~~-~~----~-~~~~---~~~~~~~~~i~~l~~~~~y~~~v~a~N~~  227 (245)
                      +.....+.. ..    . ....   .......+.|.++...+.+.|.|.|.|..
T Consensus       166 g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  219 (256)
T 1nqb_A          166 GQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHV  219 (256)
T ss_dssp             TSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             CCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCC
Confidence            111110100 00    0 0000   00113578999999999999999999853

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.55  E-value=3.4e-15  Score=106.25  Aligned_cols=119  Identities=15%  Similarity=0.177  Sum_probs=79.6

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEE--EEecCCeEEeecceEEecCCCeEEEEEEEee-cCCC-eEEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIV--NVIYPPEVSVEKQWIHTAPDMRAEIICNVYA-NPPA-KVEWFR   85 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~w~~   85 (245)
                      +.|.|.+++.+|+|.|+|.+.+..+.. ..+.+.+  .+..+|.+...+.......|+.+.|.|.+.| .|.+ .+.|++
T Consensus        76 ~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k  155 (218)
T 2rgs_A           76 STLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTS  155 (218)
T ss_dssp             EEEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEE
Confidence            469999999999999999999986652 2333322  4456787765543333346999999999998 5665 999999


Q ss_pred             CCEEeccCCcEEEE-ecCc----eeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         86 DGTAITLGGRIDMH-VSSE----KHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        86 ~~~~~~~~~~~~~~-~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      ++..+......... ..+.    .+.|.+......|.|.|+|.+.|...
T Consensus       156 ~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l  204 (218)
T 2rgs_A          156 NGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGL  204 (218)
T ss_dssp             TTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTS
T ss_pred             CCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCC
Confidence            99876432111111 1111    12344544444468999999999764

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.55  E-value=1.1e-13  Score=97.96  Aligned_cols=112  Identities=16%  Similarity=0.250  Sum_probs=76.1

Q ss_pred             cceEEecCCCeEEEEEEEeecC---CCeEEEEECC--EEe------------ccCCcEEEEecCceeEEEEccCCCCCCe
Q psy12131         56 KQWIHTAPDMRAEIICNVYANP---PAKVEWFRDG--TAI------------TLGGRIDMHVSSEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~---~~~~~w~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g  118 (245)
                      +....+.+|+.+.|.|.+.+.+   .+.+.|++++  ..+            ....++.....+....|.|.++..+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            5567789999999999999877   4789999842  221            1134555554555678999999999999


Q ss_pred             EEEEEEEeCCceeE-EEEEEEe--cC-CCCccccC---ccccCCCeeEEEEEeCCC
Q psy12131        119 NYMCQASNNLGSSQ-QFIQLSG--IP-NIPVFQKS---SRRLGPDGYRLVWQVDTY  167 (245)
Q Consensus       119 ~y~C~~~n~~g~~~-~~~~~~~--~~-~~p~~~~~---~~~~~~~~~~l~~~~~~~  167 (245)
                      .|.|.+.|..+... ....+.+  .+ .+|.+...   .....+..+.|.|.+.+.
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~  142 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDF  142 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEE
T ss_pred             EEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEE
Confidence            99999999865321 2223333  22 34443321   123457799999999653

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.55  E-value=1.4e-13  Score=98.86  Aligned_cols=136  Identities=13%  Similarity=0.137  Sum_probs=84.3

Q ss_pred             cceEEEeec----ceEEEeccCCCCCEEEEEEEEcCCC-------CceeeEEEEEEe----cCCeEEeecceEEecCCCe
Q psy12131          2 KEIELLYNR----ESLDLDRVTLKLAGLYQCIASNNIG-------ESTSKNFIVNVI----YPPEVSVEKQWIHTAPDMR   66 (245)
Q Consensus         2 ~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~-------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~   66 (245)
                      +|+.+..+.    .+|.|.+++.+|+|.|.|.+.+..+       ........|.|.    .+|.+...+....+..|+.
T Consensus        70 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~  149 (232)
T 3qhz_H           70 TRLTISKDTSKSQVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGT  149 (232)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CE
T ss_pred             CceEEEeccCCCEEEEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCc
Confidence            467776543    3599999999999999999997521       112334556665    3566654433344567999


Q ss_pred             EEEEEEEeecCC--CeEEEEECCEEeccCCcEEEEecC----ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131         67 AEIICNVYANPP--AKVEWFRDGTAITLGGRIDMHVSS----EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus        67 ~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      +.|.|.+.+.++  ..+.|++++..+............    ..+.|.|......| |.|+|.+.|..+.......+.
T Consensus       150 v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~  226 (232)
T 3qhz_H          150 AALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE  226 (232)
T ss_dssp             EEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeC
Confidence            999999987544  368899987532110000011111    12468888888888 999999999887665555443

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.55  E-value=4e-14  Score=103.96  Aligned_cols=128  Identities=20%  Similarity=0.238  Sum_probs=85.4

Q ss_pred             ceEEEe---ecceEEEeccCCCCCEEEEEEEEcCCC---CceeeEEEEEEec------CCeEEee-cceEEecCCCeEEE
Q psy12131          3 EIELLY---NRESLDLDRVTLKLAGLYQCIASNNIG---ESTSKNFIVNVIY------PPEVSVE-KQWIHTAPDMRAEI   69 (245)
Q Consensus         3 ~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l   69 (245)
                      |+.+..   +..+|.|.+++.+|+|.|+|.+.+...   ........|.|..      +|.+... +....+..|+.+.|
T Consensus        90 r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L  169 (270)
T 3qib_D           90 RFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATL  169 (270)
T ss_dssp             HEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEE
T ss_pred             cEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEE
Confidence            566553   245699999999999999999996432   1123445677765      5655433 22223445999999


Q ss_pred             EEEEee-cCCC-eEEEEECCEEeccCCcEEE---E-----ecC---ceeEEEEccCCCCC-CeEEEEEEEeCCce
Q psy12131         70 ICNVYA-NPPA-KVEWFRDGTAITLGGRIDM---H-----VSS---EKHSLLVRHIKDTD-FGNYMCQASNNLGS  130 (245)
Q Consensus        70 ~C~~~~-~~~~-~~~w~~~~~~~~~~~~~~~---~-----~~~---~~~~l~i~~~~~~d-~g~y~C~~~n~~g~  130 (245)
                      .|.+.+ .|.+ .+.|++++..+........   .     ..+   ..+.|.|......| .|.|+|.+.|....
T Consensus       170 ~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~  244 (270)
T 3qib_D          170 VCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  244 (270)
T ss_dssp             EEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBC
T ss_pred             EEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCC
Confidence            999988 6666 8999999988865321100   0     000   02456777776666 89999999997543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.55  E-value=3.1e-14  Score=100.63  Aligned_cols=111  Identities=19%  Similarity=0.210  Sum_probs=76.6

Q ss_pred             eecceEEecCCCeEEEEEEEeecCCCeEEEEEC--CEEec------------cCCcEEEEecCceeEEEEccCCCCCCeE
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGN  119 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~  119 (245)
                      .++ .+.+.+|+.+.|.|.+.  +.+.+.|++.  +....            ...++.+........|.|.+++.+|.|.
T Consensus         6 ~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   82 (211)
T 3tv3_L            6 QPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAV   82 (211)
T ss_dssp             CCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEE
T ss_pred             eCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEE
Confidence            344 67788999999999998  7889999983  22111            2245555555567789999999999999


Q ss_pred             EEEEEEeCCc--eeEEEEEEEecC---CCCccccC---ccccCCCeeEEEEEeCCC
Q psy12131        120 YMCQASNNLG--SSQQFIQLSGIP---NIPVFQKS---SRRLGPDGYRLVWQVDTY  167 (245)
Q Consensus       120 y~C~~~n~~g--~~~~~~~~~~~~---~~p~~~~~---~~~~~~~~~~l~~~~~~~  167 (245)
                      |.|.+.|..+  .......+.+..   .+|.+...   .....++.+.|.|.+.+.
T Consensus        83 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~  138 (211)
T 3tv3_L           83 YYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDF  138 (211)
T ss_dssp             EEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEE
T ss_pred             EEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeee
Confidence            9999999877  233334444432   33433221   122358899999999653

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.55  E-value=1.2e-13  Score=96.21  Aligned_cols=154  Identities=12%  Similarity=0.137  Sum_probs=94.9

Q ss_pred             cceEEecCCCeEEEEEEEee-cCCCeEEEEECCEEec---cC---------------CcEEEEecCceeEEEEccCCCCC
Q psy12131         56 KQWIHTAPDMRAEIICNVYA-NPPAKVEWFRDGTAIT---LG---------------GRIDMHVSSEKHSLLVRHIKDTD  116 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~-~~~~~~~w~~~~~~~~---~~---------------~~~~~~~~~~~~~l~i~~~~~~d  116 (245)
                      +..+.+..|+.+.|.|.+.+ .+.+.+.|++++..+.   ..               .++.+.   ....|.|.+++.+|
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~sL~I~~v~~~D   81 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFT---QSYSLQLSNLKMED   81 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEEC---TTCCEEECSCCGGG
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEEC---CCeEEEECCCCccc
Confidence            44667889999999999875 4457999999876442   11               122221   24689999999999


Q ss_pred             CeEEEEEEEeCCceeEEEEEEEecCCC--CccccCcc-ccCCC-eeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeC
Q psy12131        117 FGNYMCQASNNLGSSQQFIQLSGIPNI--PVFQKSSR-RLGPD-GYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIP  192 (245)
Q Consensus       117 ~g~y~C~~~n~~g~~~~~~~~~~~~~~--p~~~~~~~-~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (245)
                      .|.|.|.+.+..+.....+.|.+...+  |.+..... ...+. .+.|.|.+.+.+|...+. |+++..      .+ . 
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p~p~i~-W~~~g~------~l-~-  152 (193)
T 2if7_A           82 TGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFR-WEALGN------TL-S-  152 (193)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCTTCEEE-EEETTE------EE-E-
T ss_pred             CceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCCceEEE-EEeCCE------Ec-C-
Confidence            999999999988876666666664332  33322211 12344 799999997754333333 444321      11 1 


Q ss_pred             CCCCCCcceeeeEEEec-CCCCCceEEEEEEEEecCCCC
Q psy12131        193 SDGSLAGPIYTQSYNIT-GLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       193 ~~~~~~~~~~~~~~~i~-~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      ..         ..+.|. .....+.+.|.|.|.|.+|..
T Consensus       153 ~~---------~~l~i~~~~~~~d~G~Y~C~a~N~~g~~  182 (193)
T 2if7_A          153 SQ---------PNLTVSWDPRISSEQDYTCIAENAVSNL  182 (193)
T ss_dssp             SS---------SEEEEEECTTTCSCCEEEEEEEETTEEE
T ss_pred             CC---------CeEEEEeccCcCCCCcEEEEEECCCCcc
Confidence            11         123332 223224556666699999875

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=99.55  E-value=5.6e-14  Score=111.45  Aligned_cols=215  Identities=14%  Similarity=0.100  Sum_probs=128.4

Q ss_pred             ccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeec----CCC--eEEEEECCEE-
Q psy12131         17 RVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN----PPA--KVEWFRDGTA-   89 (245)
Q Consensus        17 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~----~~~--~~~w~~~~~~-   89 (245)
                      +....+.|.|.|.+.|..+.............+|..+...  ........+.|.+.....    +..  .+.|...+.. 
T Consensus       301 ~S~s~~~Gs~~C~C~ng~~ra~~d~~~~~ct~pPsaP~nl--~~~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~~~~  378 (536)
T 3fl7_A          301 HTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYL--TAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPES  378 (536)
T ss_dssp             SEECCCTTCSSCEECTTCBCCTTCCTTSCCBCCCCCBSCE--EEECCTTSEEEEECCBSCCCSCSCCEEEEEEEEECC-C
T ss_pred             CCCCCCCCccEEEEeccccccCCCccccccccCCCcccce--EEEecCCEEEEEEeCCcCCCCCceeEEEEEEEeccCCC
Confidence            3345688999999999876532222222222344322111  122345677776664221    111  3444431110 


Q ss_pred             -----eccCCcEEE-EecCceeEEEEccCCCCCCeEEEEEEEeCCce-----eEEEEEEEecCCCCccccCccccCCCee
Q psy12131         90 -----ITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS-----SQQFIQLSGIPNIPVFQKSSRRLGPDGY  158 (245)
Q Consensus        90 -----~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~-----~~~~~~~~~~~~~p~~~~~~~~~~~~~~  158 (245)
                           ......+.. ........+.|.++.+...+.|+..|.|..|.     ....+.+...+.+|..... ......++
T Consensus       379 ~~~~~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T~~~~Ps~~~~-~~~s~tSV  457 (536)
T 3fl7_A          379 GECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRL-EGRSTTSL  457 (536)
T ss_dssp             CCEEECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEEECCSCCCCEEEE-EECCC-CC
T ss_pred             CcccccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEEeecccCCCCCce-eeccCCeE
Confidence                 001111100 01123457889999999999999999998875     2334445544555544433 45677899


Q ss_pred             EEEEEeC--CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcce
Q psy12131        159 RLVWQVD--TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAY  236 (245)
Q Consensus       159 ~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~  236 (245)
                      .|+|.++  .++++.+|.|.|+.......+..+..  .        ...+.|.+|.+++.|.|+|+|.|..|.|.+|..+
T Consensus       458 ~LsW~pP~~~ng~I~~Y~V~y~~~~~~~~~~~v~~--~--------~ts~~l~gL~P~T~Y~frVrA~n~~G~Gp~S~~v  527 (536)
T 3fl7_A          458 SVSWSIPPPQQSRVWKYEVTYRKKGDSNSYNVRRT--E--------GFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVH  527 (536)
T ss_dssp             EEEEECCTTTTTTCSEEEEEEEEC--CCCCEEEEE--S--------SSEEECCSCCSSCEEEEEEEEECC---CEECCCE
T ss_pred             EEEEECCcCCCCcccEEEEEEEECCCCceEEEEcC--C--------CCEEEECCCCCCCEEEEEEEEEcCCcccCCCCCE
Confidence            9999983  45789999999998652223332221  1        2689999999999999999999999999999999


Q ss_pred             EEecCCCC
Q psy12131        237 VFATEGAE  244 (245)
Q Consensus       237 ~~~t~~~~  244 (245)
                      .++|.+.+
T Consensus       528 ~~~T~~~~  535 (536)
T 3fl7_A          528 EFQTLSPE  535 (536)
T ss_dssp             EEECCC--
T ss_pred             EEEeCCCC
Confidence            99998753

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.54  E-value=7.1e-13  Score=96.61  Aligned_cols=167  Identities=16%  Similarity=0.098  Sum_probs=101.5

Q ss_pred             eEEecCCCeEEEEEEEeecC--CCeEEEEEC--CE---Eec-------------cCCcEEEEec--CceeEEEEccCCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANP--PAKVEWFRD--GT---AIT-------------LGGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~--~~---~~~-------------~~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      ...+.+|+.+.|.|.+.+.|  .+.+.|++.  +.   .+.             ...++.+...  .....|.|.+++.+
T Consensus         9 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (257)
T 1f3r_B            9 PGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD   88 (257)
T ss_dssp             CSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTT
T ss_pred             CccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcc
Confidence            34688999999999999875  679999984  21   110             1245555432  44678999999999


Q ss_pred             CCeEEEEEEEeCCc-------ee--EEEEEEEecCCC--------------Ccccc---CccccCCCeeEEEEEeCCCCC
Q psy12131        116 DFGNYMCQASNNLG-------SS--QQFIQLSGIPNI--------------PVFQK---SSRRLGPDGYRLVWQVDTYSG  169 (245)
Q Consensus       116 d~g~y~C~~~n~~g-------~~--~~~~~~~~~~~~--------------p~~~~---~~~~~~~~~~~l~~~~~~~~~  169 (245)
                      |.|.|.|.+.|..|       ..  .....|.+...+              +.+..   ......++.+.|.|.+.+.++
T Consensus        89 DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~  168 (257)
T 1f3r_B           89 DTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNIN  168 (257)
T ss_dssp             CCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCB
T ss_pred             cCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCC
Confidence            99999999999854       11  122334443221              11111   123567899999999966644


Q ss_pred             ceEEEEEEEeec-CCCCeEEEeeCC-----CCCCC---cceeeeEEEecCCCCCceEEEEEEEEecC
Q psy12131        170 IIQYLLKFRERE-ELTPWRNIVIPS-----DGSLA---GPIYTQSYNITGLQLFTQYEASVLAKNRF  227 (245)
Q Consensus       170 ~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~---~~~~~~~~~i~~l~~~~~y~~~v~a~N~~  227 (245)
                      .  ...|++... ....+. .....     .....   .......+.|.++...+.+.|.|.|.|..
T Consensus       169 ~--~v~W~k~~~g~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          169 N--YLAWYQQKLGEAPKLL-IYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             T--CEEEEEECTTSCCEEE-EETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             C--cEEEEEECCCCCcEEE-EEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence            3  344666431 111111 00000     00000   01123578999999999999999999964

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=99.54  E-value=7.1e-12  Score=93.37  Aligned_cols=108  Identities=14%  Similarity=0.068  Sum_probs=69.4

Q ss_pred             CeEEEEEEEeCCceeEEEEEE----EecCCCCccccCccccCCCeeEEEEEeCC--CCCc----eEEEEEEEeecCCCCe
Q psy12131        117 FGNYMCQASNNLGSSQQFIQL----SGIPNIPVFQKSSRRLGPDGYRLVWQVDT--YSGI----IQYLLKFREREELTPW  186 (245)
Q Consensus       117 ~g~y~C~~~n~~g~~~~~~~~----~~~~~~p~~~~~~~~~~~~~~~l~~~~~~--~~~~----~~~~~~~~~~~~~~~~  186 (245)
                      ...+.|.|.|..|.......+    .++|.||.............+.|+|.++.  +.|.    +.|.|+|+..+ ...|
T Consensus       185 ~y~~~V~A~n~lg~~s~~~~f~~~~iVkPdPP~~l~~~~~~~~~~l~vsW~~P~~~~~p~~~~~L~Y~vryr~~~-~~~~  263 (306)
T 3d85_D          185 PIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKS-KREK  263 (306)
T ss_dssp             CEEEEEEEEETTEEEEEEEEECHHHHBCCCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------
T ss_pred             EEEEEEEEEccCCccccceEEEehhcEecCCCceEEEEEecCCCcEEEEEcCCCCCcCCCceeeEEEEEEEEECC-CCcc
Confidence            455789999999876665544    36788887665543223378999999843  2333    68999999865 3335


Q ss_pred             EEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceE
Q psy12131        187 RNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYV  237 (245)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~  237 (245)
                      ........         .++.+.   .+..|.|+|+|+|..|.|.+|+...
T Consensus       264 ~~~~~~~~---------ts~~l~---~~~~Y~vqVRa~~~~~~G~WSeWS~  302 (306)
T 3d85_D          264 KDRVFTDK---------TSATVI---CRKNASISVRAQDRYYSSSWSEWAS  302 (306)
T ss_dssp             -CEEEESS---------SEEEEC---CCSSCEEEEEEEESSSCCCCCCCEE
T ss_pred             EEEeeccc---------cEEEEe---CCCeEEEEEEeccCCCCCCCCCCCC
Confidence            43322111         345553   4899999999999999999887644

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.54  E-value=2.2e-13  Score=95.47  Aligned_cols=164  Identities=11%  Similarity=0.107  Sum_probs=95.5

Q ss_pred             eEEecCCCeEEEEEEEee----cCCCeEEEEECCEEecc------------CCcEEEEecCceeEEEEccCCCCCCeEEE
Q psy12131         58 WIHTAPDMRAEIICNVYA----NPPAKVEWFRDGTAITL------------GGRIDMHVSSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~----~~~~~~~w~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      .+.+..|+.+.|.|.+.+    .+.+.+.|++++..+..            ..+..+. ......|.|.+++.+|.|.|.
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~-~~~~~~L~I~~v~~~D~G~Y~   81 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-ITNNLSIVILALRPSDEGTYE   81 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-STTTTEEEECSCCGGGCEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEc-cCCCcEEEEecccchhCeEEE
Confidence            356779999999999853    45679999999876521            1122221 223468999999999999999


Q ss_pred             EEEEeCCcee-----EEEEEEEecCC--CCccccCccccCCCeeEEEEEeC-CCCCceEEEEEEEeec-CCCCeEEEeeC
Q psy12131        122 CQASNNLGSS-----QQFIQLSGIPN--IPVFQKSSRRLGPDGYRLVWQVD-TYSGIIQYLLKFRERE-ELTPWRNIVIP  192 (245)
Q Consensus       122 C~~~n~~g~~-----~~~~~~~~~~~--~p~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~  192 (245)
                      |.+.|..|..     ...+.|.+.+.  .|...... ...++.+.|.|.+. +.++. . ..|+++.. ....-......
T Consensus        82 C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~-~~~g~~~~l~C~~~~g~P~p-~-i~W~k~g~~l~~~~~~~~~~  158 (201)
T 1dr9_A           82 CVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFE-IPTSNIRRIICSTSGGFPEP-H-LSWLENGEELNAINTTVSQD  158 (201)
T ss_dssp             EEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEE-CSSTTEEEEEEEEEEESSCE-E-EEEEESSCEECCSEEEEEEC
T ss_pred             EEEEcCCCCccccccccEEEEEEcCCCCCCceEecc-CCCCCeEEEEEecCCccCCC-E-EEEEECCEECccccceEEec
Confidence            9999976543     34555655543  23332221 24577899999994 55443 2 33555433 11111122222


Q ss_pred             CCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        193 SDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       193 ~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      ....   ..  ....+..+...+...|.|.|.|..|..
T Consensus       159 ~~~~---~~--~~~~~~~v~~~d~g~Y~C~a~n~~~~~  191 (201)
T 1dr9_A          159 PETE---LY--AVSSKLDFNMTTNHSFMCLIKYGHLRV  191 (201)
T ss_dssp             TTTC---CE--EEEEEEEEETTSCEEEEEEEEETTCCE
T ss_pred             CCCc---EE--EEEEEEEEEecCCCEEEEEEecCccee
Confidence            1110   00  111112233345566777799998754

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.54  E-value=2.1e-13  Score=87.07  Aligned_cols=82  Identities=18%  Similarity=0.205  Sum_probs=67.9

Q ss_pred             cCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEec-------CceeEEEEccCCCCCCeEEEEEEEeCCceeEEE
Q psy12131         62 APDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS-------SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF  134 (245)
Q Consensus        62 ~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  134 (245)
                      ..+..+.|.|.+.|.|.|.+.|+++|..+....+..+...       .....|.|..+...|.|.|+|.|.|..|....+
T Consensus        13 ~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t   92 (126)
T 1he7_A           13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS   92 (126)
T ss_dssp             CCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEE
Confidence            3677899999999999999999999999987766443221       124689999999999999999999999999888


Q ss_pred             EEEEecCCC
Q psy12131        135 IQLSGIPNI  143 (245)
Q Consensus       135 ~~~~~~~~~  143 (245)
                      +.+.+...|
T Consensus        93 ~~l~v~~~P  101 (126)
T 1he7_A           93 IMAAFMDNP  101 (126)
T ss_dssp             EEECCCSCT
T ss_pred             EEEEEEcCC
Confidence            888766444

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.54  E-value=1.2e-13  Score=98.06  Aligned_cols=115  Identities=17%  Similarity=0.311  Sum_probs=77.0

Q ss_pred             eEEeecceEEecCCCeEEEEEEEeec-CCCeEEEEECC---EE--e----------c---cCCcEEEEecCceeEEEEcc
Q psy12131         51 EVSVEKQWIHTAPDMRAEIICNVYAN-PPAKVEWFRDG---TA--I----------T---LGGRIDMHVSSEKHSLLVRH  111 (245)
Q Consensus        51 ~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~w~~~~---~~--~----------~---~~~~~~~~~~~~~~~l~i~~  111 (245)
                      .+..++ .+.+.+|+.+.|.|.+.+. +.+.+.|++..   ..  +          .   ...++.+........|.|.+
T Consensus         3 ~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   81 (218)
T 3s96_B            3 VLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISN   81 (218)
T ss_dssp             SEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESS
T ss_pred             eEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEcc
Confidence            344455 6778899999999999998 88999999821   10  0          0   11255544455567899999


Q ss_pred             CCCCCCeEEEEEEEeCCc-----eeEEEEEEEec--C-CCCcccc---CccccCCCeeEEEEEeCC
Q psy12131        112 IKDTDFGNYMCQASNNLG-----SSQQFIQLSGI--P-NIPVFQK---SSRRLGPDGYRLVWQVDT  166 (245)
Q Consensus       112 ~~~~d~g~y~C~~~n~~g-----~~~~~~~~~~~--~-~~p~~~~---~~~~~~~~~~~l~~~~~~  166 (245)
                      ++.+|.|.|.|.+.|..|     .....+.|.+.  + .+|.+..   ......++.+.|.|.+.+
T Consensus        82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g  147 (218)
T 3s96_B           82 IQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISN  147 (218)
T ss_dssp             CCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEE
T ss_pred             CCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECc
Confidence            999999999999999775     22223333333  2 3343322   122344588999999965

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.54  E-value=2.3e-14  Score=86.89  Aligned_cols=79  Identities=18%  Similarity=0.410  Sum_probs=65.7

Q ss_pred             CCeEEeecce--EEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         49 PPEVSVEKQW--IHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        49 ~p~~~~~~~~--~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      ||.+..++..  +.+..|+.+.|.|.+.+ |.+.+.|++++..+....++.+...+....|.|.++..+|.|.|+|.|.|
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   82 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGD   82 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSS
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcc
Confidence            4555444443  34568999999999865 88899999999999988888888888888999999999999999999977


Q ss_pred             CC
Q psy12131        127 NL  128 (245)
Q Consensus       127 ~~  128 (245)
                      ..
T Consensus        83 ~~   84 (91)
T 2lvc_A           83 EC   84 (91)
T ss_dssp             CE
T ss_pred             eE
Confidence            53

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.53  E-value=5.4e-14  Score=83.92  Aligned_cols=71  Identities=23%  Similarity=0.588  Sum_probs=63.0

Q ss_pred             ceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         57 QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ..+.+.+|+.+.|.|.+.+ |.|.+.|++++..+....++.+...+....|.|.++..+|.|.|+|.|.|..
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~   74 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQDS   74 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTTC
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECCEE
Confidence            3567889999999999865 8889999999999998888888888888899999999999999999997653

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=99.53  E-value=3e-12  Score=90.70  Aligned_cols=132  Identities=19%  Similarity=0.176  Sum_probs=96.0

Q ss_pred             eEEEEccC-CCCCCeEEEEEEEeCCceeEE-EEEEE----ecCCCCccccCccc-cCCCeeEEEEEeC--CCCCceEEEE
Q psy12131        105 HSLLVRHI-KDTDFGNYMCQASNNLGSSQQ-FIQLS----GIPNIPVFQKSSRR-LGPDGYRLVWQVD--TYSGIIQYLL  175 (245)
Q Consensus       105 ~~l~i~~~-~~~d~g~y~C~~~n~~g~~~~-~~~~~----~~~~~p~~~~~~~~-~~~~~~~l~~~~~--~~~~~~~~~~  175 (245)
                      ..+.|.++ .......|++.|.|..|.... ...+.    ..|.+|........ ....++.|+|.+.  .++++..|.|
T Consensus        62 ~~~~i~~L~~~~t~Y~~~V~A~n~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v  141 (215)
T 1bqu_A           62 TSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNI  141 (215)
T ss_dssp             TEEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGSEECCCCEEEEEECC--CCSCEEEEEECCGGGGTSCEEEEE
T ss_pred             ceEEEcCCccccccEEEEEEEEecccCccCCcEEecccccCcCCCCCceEEEEecCCCceEEEEEeCCCCCCcceEEEEE
Confidence            46788888 777888899999999887652 12221    34666655443221 2568999999973  2457899999


Q ss_pred             EEEeecCCCCeEEEeeC--CCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC---CCcceEEecCCCC
Q psy12131        176 KFREREELTPWRNIVIP--SDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR---PSKAYVFATEGAE  244 (245)
Q Consensus       176 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~---~s~~~~~~t~~~~  244 (245)
                      +|+... ...|..+...  ...       ...+.|.+|.+++.|.|+|+|.|..|.|.   +|..+.++|.+.+
T Consensus       142 ~y~~~~-~~~~~~~~~~~~~~~-------~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S~~S~~~~~~T~~~~  207 (215)
T 1bqu_A          142 QYRTKD-ASTWSQIPPEDTAST-------RSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDR  207 (215)
T ss_dssp             EEEETT-CSSCEECCGGGGCSC-------CSEEEECSCCSSEEEEEEEEEEETTSCSCCCCCCCCEEEEECCCH
T ss_pred             EEccCC-CCCceEeccccccCc-------cceEEeCCCCCCCEEEEEEEEccCCCCCccCCCCCcccccccccC
Confidence            999875 5678765321  111       26899999999999999999999999855   6778888988764

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.53  E-value=1.4e-12  Score=95.66  Aligned_cols=178  Identities=10%  Similarity=0.075  Sum_probs=106.4

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecC-----CCeEEEEECC--E---Eec---------cCCcEEEEecCceeEEEE
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANP-----PAKVEWFRDG--T---AIT---------LGGRIDMHVSSEKHSLLV  109 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-----~~~~~w~~~~--~---~~~---------~~~~~~~~~~~~~~~l~i  109 (245)
                      .+.+...+..+.+.+|+.+.|.|.+.+.+     .+.+.|++..  .   .+.         ...++.+...+....|.|
T Consensus        15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I   94 (268)
T 1x9q_A           15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI   94 (268)
T ss_dssp             CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence            45555666677889999999999998876     4789999742  2   111         134566554455678999


Q ss_pred             ccCCCCCCeEEEEEEEeCCce-e--EEEEEEEecCC------CCc--------------cc---cCccccCCCeeEEEEE
Q psy12131        110 RHIKDTDFGNYMCQASNNLGS-S--QQFIQLSGIPN------IPV--------------FQ---KSSRRLGPDGYRLVWQ  163 (245)
Q Consensus       110 ~~~~~~d~g~y~C~~~n~~g~-~--~~~~~~~~~~~------~p~--------------~~---~~~~~~~~~~~~l~~~  163 (245)
                      .+++.+|.|.|.|.+.|..+. .  ...+.+...+.      ||.              ..   .......++.++|.|.
T Consensus        95 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~  174 (268)
T 1x9q_A           95 NRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCV  174 (268)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEE
T ss_pred             CCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEE
Confidence            999999999999999987542 1  12333332211      110              11   1234567899999999


Q ss_pred             eCCCCCceEEEEEEEeec-CCCCeEEEee-----------CCCCCCCc-----ceeeeEEEecCCCCCceEEEEEEEEec
Q psy12131        164 VDTYSGIIQYLLKFRERE-ELTPWRNIVI-----------PSDGSLAG-----PIYTQSYNITGLQLFTQYEASVLAKNR  226 (245)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----------~~~~~~~~-----~~~~~~~~i~~l~~~~~y~~~v~a~N~  226 (245)
                      ..+..+......||+... ....+.....           ........     ......+.|.++...+.+.|.|.|.|.
T Consensus       175 ~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          175 TSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             EESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             ecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            966543223345666532 1111111000           00000000     011357999999999999999999985

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.52  E-value=1.1e-13  Score=87.31  Aligned_cols=96  Identities=19%  Similarity=0.154  Sum_probs=75.1

Q ss_pred             cCCCCccccCccccCCCeeEEEEEe---CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCce
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQV---DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ  216 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  216 (245)
                      .|.+|............++.|.|..   +++.++.+|.|+|+... ...|..+....         ...+.+.+|.+++.
T Consensus         8 ~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~---------~~~~~v~~L~p~t~   77 (110)
T 2crz_A            8 PPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIE-KDEPREVYQGS---------EVECTVSSLLPGKT   77 (110)
T ss_dssp             CCCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTT-SCCCEEEEEES---------CSEEEEESCCTTCE
T ss_pred             CCCCCCCceeccccCCCEEEEEeCCCCCCCCceeEEEEEEEEeCC-CCceEEEEeCC---------cEEEEECCcCCCCE
Confidence            4555554443233566799999975   34578999999998764 56787665322         26799999999999


Q ss_pred             EEEEEEEEecCCCCCCCcceEEecCCCCC
Q psy12131        217 YEASVLAKNRFGWSRPSKAYVFATEGAET  245 (245)
Q Consensus       217 y~~~v~a~N~~G~~~~s~~~~~~t~~~~~  245 (245)
                      |.|||.|.|..|.|.+|..+.+.|.+++|
T Consensus        78 Y~frV~A~n~~G~g~~S~~~~~~T~~~~P  106 (110)
T 2crz_A           78 YSFRLRAANKMGFGPFSEKCDITTAPGSG  106 (110)
T ss_dssp             EEECCEEECSSCBCCCCCCEEEECCCSCC
T ss_pred             EEEEEEEEcCCccCCCCCccccccCCCCC
Confidence            99999999999999999999999988765

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.52  E-value=3.4e-13  Score=95.66  Aligned_cols=172  Identities=10%  Similarity=0.092  Sum_probs=97.9

Q ss_pred             cceEEecCCCeEEEEEEEeecC--CCeEEEEECC--EEe------------ccCCcEEEEecCceeEEEEccCCCCCCeE
Q psy12131         56 KQWIHTAPDMRAEIICNVYANP--PAKVEWFRDG--TAI------------TLGGRIDMHVSSEKHSLLVRHIKDTDFGN  119 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  119 (245)
                      |....+.+|+.+.|.|.+.+.+  .+.+.|++++  ...            ....++.+...+....|.|.++..+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            4557788999999999954333  5789999843  111            01235555545566789999999999999


Q ss_pred             EEEEEEeCCc--ee--EEEEEEEecCCCCccccCc---cccCCCeeEEEEEeCCCCCc-eEEEEEEEeec-CCCC-eEEE
Q psy12131        120 YMCQASNNLG--SS--QQFIQLSGIPNIPVFQKSS---RRLGPDGYRLVWQVDTYSGI-IQYLLKFRERE-ELTP-WRNI  189 (245)
Q Consensus       120 y~C~~~n~~g--~~--~~~~~~~~~~~~p~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~~-~~~~  189 (245)
                      |.|.+.|..+  ..  ...+.+...+.+|.+....   ....+..+.|.|.+.+..|. .. ..|+++.. .... ....
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~-v~W~k~g~~~~~~~~~~~  165 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAK-VQWKVDNALQSGNSQESV  165 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCE-EEEEETTEECCSSEEEEE
T ss_pred             EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceE-EEEEECCeecCCCeeEec
Confidence            9999999875  11  1233333333345433211   12347799999999653222 22 23555433 1111 1111


Q ss_pred             eeCCCCCCCcc-eeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        190 VIPSDGSLAGP-IYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       190 ~~~~~~~~~~~-~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      ......  ... .....+.|......+...|.|.|.|.....
T Consensus       166 ~~~~~~--~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  205 (216)
T 2xzc_L          166 TEQDSK--DSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS  205 (216)
T ss_dssp             CCCCTT--TCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred             CcccCC--CCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence            111110  011 112256666655555556666699987543

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.52  E-value=9.7e-14  Score=101.93  Aligned_cols=141  Identities=15%  Similarity=0.068  Sum_probs=71.0

Q ss_pred             cCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--CEE---e--
Q psy12131         18 VTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GTA---I--   90 (245)
Q Consensus        18 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~~---~--   90 (245)
                      .++.|.+.|.|.+.+..|.. .....      ..+...+..+.+.+|+.+.|.|.+.+ +.+.+.|++.  +..   +  
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~-~~~~~------~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~   74 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGS-GGGGG------MKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLIN   74 (270)
T ss_dssp             --------------------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEE
T ss_pred             chhhhHHHHHHHHhccCCcc-ccccc------eeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEE
Confidence            46789999999999877652 22222      23344555677889999999999864 6789999982  111   0  


Q ss_pred             -------ccC---C-cEEEEe-cCceeEEEEccCCCCCCeEEEEEEEeCCc----eeEE--EEEEEec---CCCCccccC
Q psy12131         91 -------TLG---G-RIDMHV-SSEKHSLLVRHIKDTDFGNYMCQASNNLG----SSQQ--FIQLSGI---PNIPVFQKS  149 (245)
Q Consensus        91 -------~~~---~-~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~g----~~~~--~~~~~~~---~~~p~~~~~  149 (245)
                             ...   . ++.+.. ......|.|.+++.+|.|.|.|.+.+..+    ....  .+.+...   +.+|.....
T Consensus        75 ~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~  154 (270)
T 3qib_D           75 FQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVF  154 (270)
T ss_dssp             EETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEE
T ss_pred             ECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEE
Confidence                   000   0 444332 23467899999999999999999996432    1112  3333321   113332211


Q ss_pred             -c---cccCCCeeEEEEEeCC
Q psy12131        150 -S---RRLGPDGYRLVWQVDT  166 (245)
Q Consensus       150 -~---~~~~~~~~~l~~~~~~  166 (245)
                       .   ....+..+.|.|.+.+
T Consensus       155 ~~~~~~~~~g~~v~L~C~~~g  175 (270)
T 3qib_D          155 EPSEAEISHTQKATLVCLATG  175 (270)
T ss_dssp             ECCHHHHHHHSEEEEEEEEEE
T ss_pred             CCCccccccCCceEEEEEecc
Confidence             1   1234789999999966

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.52  E-value=3.9e-14  Score=106.76  Aligned_cols=119  Identities=14%  Similarity=0.152  Sum_probs=82.3

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEE----EecCCeEEeecceEEecCCCeEEEEEEEeec-CCC-eEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN----VIYPPEVSVEKQWIHTAPDMRAEIICNVYAN-PPA-KVEWF   84 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~----v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~w~   84 (245)
                      +.|.|.+++.+|+|.|+|.|.|..+. ......+.    +..+|.+...+.......|+.+.|.|.+.|. |.+ .+.|+
T Consensus       178 ~~L~I~~~~~~D~G~Y~C~a~n~~~~-~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~  256 (323)
T 2wqr_A          178 STLPVGTRDWIEGETYQCRVTHPHLP-RALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWL  256 (323)
T ss_dssp             EEEECCHHHHHTTCCEEEEEECTTSS-SCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEEECHHHccCCCCEEEEEECCCCC-CCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEE
Confidence            36999999999999999999997643 22233332    2256776554332223349999999999984 433 89999


Q ss_pred             ECCEEeccCCcEE---EEe-cC---ceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         85 RDGTAITLGGRID---MHV-SS---EKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        85 ~~~~~~~~~~~~~---~~~-~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      +++..+.......   ... ++   ..+.|.|..+..+|.|.|+|.|.|....
T Consensus       257 k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          257 HNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             ETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             ECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            9999876432110   011 11   1357889988888999999999998765

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.52  E-value=9e-13  Score=95.47  Aligned_cols=176  Identities=14%  Similarity=0.138  Sum_probs=95.8

Q ss_pred             cceEEecCCCeEEEEEEEeecCCCe-----EEEEECCEEecc--------CCcEEEE----------ecCceeEEEEccC
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPPAK-----VEWFRDGTAITL--------GGRIDMH----------VSSEKHSLLVRHI  112 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~~~-----~~w~~~~~~~~~--------~~~~~~~----------~~~~~~~l~i~~~  112 (245)
                      +....+..|+.+.|.|.+.+.|.+.     +.|+++......        .......          .......|.|.++
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v   89 (248)
T 3pv7_A           10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI   89 (248)
T ss_dssp             TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred             CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence            3455678999999999999887765     999985321110        0000000          0112346999999


Q ss_pred             CCCCCeEEEEEEEeCCceeEEEEEEEecCCCCcccc-CccccCCCeeEEEEEeCC-CCCceEEEEEEEeecC--------
Q psy12131        113 KDTDFGNYMCQASNNLGSSQQFIQLSGIPNIPVFQK-SSRRLGPDGYRLVWQVDT-YSGIIQYLLKFREREE--------  182 (245)
Q Consensus       113 ~~~d~g~y~C~~~n~~g~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~--------  182 (245)
                      +.+|.|.|.|.+.+..+.....+.|.+...|..... ......+..+.|.|.+.+ .++...+ .|+++...        
T Consensus        90 ~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v-~W~k~g~~l~~~~~~~  168 (248)
T 3pv7_A           90 QLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFYPEAINI-TWEKQTQKFPHPIEIS  168 (248)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC--------CEEEEEEEEEBSSCCEE-EEEEECSSSCSCEEEC
T ss_pred             CHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecCCccccCCCcEEEEEEccEECCCeEE-EEEECCccCCCccccc
Confidence            999999999999998887777777766543222111 122345677889999966 3332123 35554320        


Q ss_pred             CCCe-EEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcc
Q psy12131        183 LTPW-RNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKA  235 (245)
Q Consensus       183 ~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~  235 (245)
                      .... .........   .......+.+......+...|.|.|.|..+....+..
T Consensus       169 ~~~~~~~~~~~~~~---~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~  219 (248)
T 3pv7_A          169 EDVITGPTIKNMDG---TFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSN  219 (248)
T ss_dssp             TTEEEEEEEECTTS---CEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEE
T ss_pred             cceeecccEECCCC---CEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEE
Confidence            0000 111111111   1111234555555555555666669999887555443

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.52  E-value=1.8e-13  Score=100.95  Aligned_cols=129  Identities=18%  Similarity=0.252  Sum_probs=83.8

Q ss_pred             cceEEEee---cceEEEeccCCCCCEEEEEEEEcCCC----C-ceeeEEEEEEec------CCeEEee-cceEEecCCCe
Q psy12131          2 KEIELLYN---RESLDLDRVTLKLAGLYQCIASNNIG----E-STSKNFIVNVIY------PPEVSVE-KQWIHTAPDMR   66 (245)
Q Consensus         2 ~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~~~~~----~-~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~   66 (245)
                      +|+.+..+   ..+|.|.+++.+|+|.|+|.+.+..+    . .....+.|.|..      +|.+... +....+..|+.
T Consensus        88 ~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~  167 (279)
T 2wbj_D           88 DKFLINHASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQK  167 (279)
T ss_dssp             SSEEEEECSSSEEEEEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSC
T ss_pred             CcEEEEeCCCCEEEEEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCc
Confidence            46666642   34799999999999999999998432    1 012335677764      5655443 22223346899


Q ss_pred             EEEEEEEeec-CC-CeEEEEECCEEeccCCcEE---EE----ecCc----eeEEEEccCCCCC-CeEEEEEEEeCCce
Q psy12131         67 AEIICNVYAN-PP-AKVEWFRDGTAITLGGRID---MH----VSSE----KHSLLVRHIKDTD-FGNYMCQASNNLGS  130 (245)
Q Consensus        67 ~~l~C~~~~~-~~-~~~~w~~~~~~~~~~~~~~---~~----~~~~----~~~l~i~~~~~~d-~g~y~C~~~n~~g~  130 (245)
                      +.|.|.+.+. |. +.+.|++++..+.......   ..    ....    .+.|.|......| .+.|+|.+.|....
T Consensus       168 v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~  245 (279)
T 2wbj_D          168 ATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  245 (279)
T ss_dssp             CEEEEEEEEEBSSCEEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred             eEEEEEEeeEcCCCcEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence            9999999986 43 6999999998875432110   00    0111    2347777666544 67899999997643

>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91, TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=9.4e-14  Score=87.59  Aligned_cols=94  Identities=22%  Similarity=0.337  Sum_probs=72.6

Q ss_pred             CCCCccccCccccCCCeeEEEEEeCC--CCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEE
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQVDT--YSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE  218 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  218 (245)
                      |.+|...........+++.|.|.+..  +.++.+|.|+|+... ...|..+.....         ..+.+.+|.+++.|.
T Consensus        10 P~~P~~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~---------~~~~v~~L~p~t~Y~   79 (110)
T 2db8_A           10 PATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGN-GGQFREVYVGKE---------TMCTVDGLHFNSTYN   79 (110)
T ss_dssp             CCCCBCCCCCCSCSSSEEEECCBCCTTCCSCCSEEEEEECCSS-SSCCEEEEEESC---------SCEEEECCCSSSCCE
T ss_pred             CCCccccceeeccCCCEEEEEECCCCCCCCCccEEEEEEEeCC-CCceEEEEeCCc---------CEEEECCCCCCCEEE
Confidence            33443333333346789999999833  368899999998864 567876653222         578999999999999


Q ss_pred             EEEEEEecCCCCCCCcceEEecCCCC
Q psy12131        219 ASVLAKNRFGWSRPSKAYVFATEGAE  244 (245)
Q Consensus       219 ~~v~a~N~~G~~~~s~~~~~~t~~~~  244 (245)
                      |||.|.|..|.|.+|..+.++|.+.+
T Consensus        80 frV~A~n~~G~s~~S~~~~~~T~~~p  105 (110)
T 2db8_A           80 ARVKAFNKTGVSPYSKTLVLQTSEGS  105 (110)
T ss_dssp             EEEEEECSSCBCCCCSCEECCCCCCC
T ss_pred             EEEEEEeCCcCCCCCCCEEEEcCCCC
Confidence            99999999999999999999998865

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.51  E-value=4.6e-12  Score=92.03  Aligned_cols=173  Identities=9%  Similarity=0.074  Sum_probs=103.5

Q ss_pred             ecceEEecCCCeEEEEEEEeecC--CCeEEEEEC--CEE---e--------------ccCCcEEEEec--CceeEEEEcc
Q psy12131         55 EKQWIHTAPDMRAEIICNVYANP--PAKVEWFRD--GTA---I--------------TLGGRIDMHVS--SEKHSLLVRH  111 (245)
Q Consensus        55 ~~~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~--~~~---~--------------~~~~~~~~~~~--~~~~~l~i~~  111 (245)
                      .+..+.+.+|+.+.|.|.+.+.+  .+.+.|++.  +..   +              ....++.+...  .....|.|.+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   86 (253)
T 3uzq_A            7 QSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSS   86 (253)
T ss_dssp             ECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCC
Confidence            44566788999999999998754  678999982  211   1              11234554432  3356799999


Q ss_pred             CCCCCCeEEEEEEEeCCcee-EEEEEEEecCC--------------CCccccC---ccccCCCeeEEEEEeCCCCCc--e
Q psy12131        112 IKDTDFGNYMCQASNNLGSS-QQFIQLSGIPN--------------IPVFQKS---SRRLGPDGYRLVWQVDTYSGI--I  171 (245)
Q Consensus       112 ~~~~d~g~y~C~~~n~~g~~-~~~~~~~~~~~--------------~p~~~~~---~~~~~~~~~~l~~~~~~~~~~--~  171 (245)
                      ++.+|.|.|.|.+.|..+.. .....+.+...              ++.+...   .....++.+.|.|...+.++.  .
T Consensus        87 v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~  166 (253)
T 3uzq_A           87 LTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGN  166 (253)
T ss_dssp             CCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETTE
T ss_pred             CCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCC
Confidence            99999999999999865443 22333343321              2222211   335779999999999765432  0


Q ss_pred             EEEEEEEeecCCCCeEEEeeCCC------CCCC---cceeeeEEEecCCCCCceEEEEEEEEecCC
Q psy12131        172 QYLLKFREREELTPWRNIVIPSD------GSLA---GPIYTQSYNITGLQLFTQYEASVLAKNRFG  228 (245)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G  228 (245)
                      ....||+... +..-..+.....      ....   .......+.|.++...+.+.|.|.|.|..+
T Consensus       167 ~~v~W~r~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~  231 (253)
T 3uzq_A          167 SFMHWYQQKA-GQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVP  231 (253)
T ss_dssp             ECEEEEEECT-TSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSS
T ss_pred             cEEEEEEECC-CCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCC
Confidence            1344666432 111110100000      0000   001125699999999999999999999754

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.51  E-value=7.8e-12  Score=91.03  Aligned_cols=170  Identities=13%  Similarity=0.112  Sum_probs=99.6

Q ss_pred             cceEEecCCCeEEEEEEEeec--CCCeEEEEECC--E---Ee-------------ccCCcEEEEe--cCceeEEEEccCC
Q psy12131         56 KQWIHTAPDMRAEIICNVYAN--PPAKVEWFRDG--T---AI-------------TLGGRIDMHV--SSEKHSLLVRHIK  113 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~--~~~~~~w~~~~--~---~~-------------~~~~~~~~~~--~~~~~~l~i~~~~  113 (245)
                      +....+.+|+.+.|.|.+.+.  +.+.+.|++..  .   .+             ....++.+..  ......|.|.+++
T Consensus        15 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   94 (257)
T 3gkz_A           15 SGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVS   94 (257)
T ss_dssp             ECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCC
Confidence            334558899999999999984  46799999821  1   11             0123454443  2345689999999


Q ss_pred             CCCCeEEEEEEEeCC----ceeEEEEEEEecCC-------------CCccccC---ccccCCCeeEEEEEeCCCCCceEE
Q psy12131        114 DTDFGNYMCQASNNL----GSSQQFIQLSGIPN-------------IPVFQKS---SRRLGPDGYRLVWQVDTYSGIIQY  173 (245)
Q Consensus       114 ~~d~g~y~C~~~n~~----g~~~~~~~~~~~~~-------------~p~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~  173 (245)
                      .+|.|.|.|.+.|..    ........+.+...             ++.+...   .....++.+.|.|...+.++.. .
T Consensus        95 ~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~-~  173 (257)
T 3gkz_A           95 SEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSS-H  173 (257)
T ss_dssp             GGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGG-G
T ss_pred             hhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccce-E
Confidence            999999999999962    11222233333322             2222221   2356789999999996654321 2


Q ss_pred             EEEEEeecCCCCeEEEeeCCC------CCCC---cceeeeEEEecCCCCCceEEEEEEEEecC
Q psy12131        174 LLKFREREELTPWRNIVIPSD------GSLA---GPIYTQSYNITGLQLFTQYEASVLAKNRF  227 (245)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~i~~l~~~~~y~~~v~a~N~~  227 (245)
                      ..|++... +.....+.....      ....   .......+.|.++...+.+.|.|.|.|..
T Consensus       174 v~W~k~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  235 (257)
T 3gkz_A          174 LYWYQQKP-GSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSF  235 (257)
T ss_dssp             EEEEEECT-TSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             EEEEEECC-CCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCC
Confidence            33555432 111111110000      0000   00112569999999999999999998854

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.51  E-value=2.5e-14  Score=102.74  Aligned_cols=180  Identities=11%  Similarity=0.110  Sum_probs=83.7

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECC--EEe---c---------cCCcEEEEecCceeEEEEccCCCC
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDG--TAI---T---------LGGRIDMHVSSEKHSLLVRHIKDT  115 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~--~~~---~---------~~~~~~~~~~~~~~~l~i~~~~~~  115 (245)
                      +.+...+..+.+.+|+++.|.|.+.+.+.+.+.|+++.  ...   .         ...++.....+....|.|.+++.+
T Consensus        24 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  103 (233)
T 3bqu_C           24 TTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSE  103 (233)
T ss_dssp             CCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CC
T ss_pred             eeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHH
Confidence            44445566677889999999999998888899999843  111   0         012332222233457999999999


Q ss_pred             CCeEEEEEEEeCCceeE---EEEEEEecCCCCccccC---ccccCCCeeEEEEEeCCCCCceEEEEEEEeec-CCCC-eE
Q psy12131        116 DFGNYMCQASNNLGSSQ---QFIQLSGIPNIPVFQKS---SRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE-ELTP-WR  187 (245)
Q Consensus       116 d~g~y~C~~~n~~g~~~---~~~~~~~~~~~p~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~-~~  187 (245)
                      |.|.|.|.+.|..+...   ..+.+...+.+|.+...   .....+..+.|.|.+.+..|...-..|+++.. .... ..
T Consensus       104 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~  183 (233)
T 3bqu_C          104 DVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN  183 (233)
T ss_dssp             CCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEE
T ss_pred             HCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceE
Confidence            99999999998765321   12333333334443321   12235789999999965433211233555433 1111 11


Q ss_pred             EEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        188 NIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      ........ .........+.|......+...|.|.|.|.....
T Consensus       184 ~~~~~~~~-~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  225 (233)
T 3bqu_C          184 SWTDQDSK-DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  225 (233)
T ss_dssp             EECCCCTT-TCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---C
T ss_pred             ecCCccCC-CCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCCc
Confidence            11111000 0000112345565554434445555599986544

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=99.51  E-value=7.8e-12  Score=92.64  Aligned_cols=214  Identities=13%  Similarity=0.091  Sum_probs=128.4

Q ss_pred             EEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCe-EEeecceEE-ecCCCeEEEEEEEeecCCC--eEEEEECCEE
Q psy12131         14 DLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE-VSVEKQWIH-TAPDMRAEIICNVYANPPA--KVEWFRDGTA   89 (245)
Q Consensus        14 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~-~~~g~~~~l~C~~~~~~~~--~~~w~~~~~~   89 (245)
                      .+..+.......+++.|.|..|.....  .+.+..... ...++..+. ......+.|.+.....+..  .+.|...+..
T Consensus        64 ~~~~l~p~t~Y~~~V~A~n~~G~s~~s--~~~~~~~~~~~~~p~~~~~~~~~~~si~l~W~~p~~~i~~Y~v~~~~~~~~  141 (290)
T 3l5i_A           64 KLTVNLTNDRYLATLTVRNLVGKSDAA--VLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDK  141 (290)
T ss_dssp             EEEEEECSSCEEEEEEEEESSCBCCCE--EEEECCTTCCCCCCCEEEEEEEETTEEEEEEECCSSCCCEEEEEEEEECSS
T ss_pred             EEEEEcCCceEEEEEEEEcCCCCCCCc--eEEeecccccCCCccceeEEEeCCCeEEEEEeCCCCCCCcEEEEEEECCCC
Confidence            455566666677778888887764333  233322100 001111111 1113466666654322111  3555543221


Q ss_pred             eccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE-EEEEEec---CC-CCccccCccccCCCeeEEEEEe
Q psy12131         90 ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FIQLSGI---PN-IPVFQKSSRRLGPDGYRLVWQV  164 (245)
Q Consensus        90 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~~~~~---~~-~p~~~~~~~~~~~~~~~l~~~~  164 (245)
                      .................+.+.++.+.....++..|.|..|.... .+.....   |. +|...  .......++.|+|.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~~~~~~~~t~~~~P~~~p~~~--~~~~~~~sv~l~W~~  219 (290)
T 3l5i_A          142 APCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVR--TKKVGKNEAVLEWDQ  219 (290)
T ss_dssp             SCCCCEEEEEETTCSEEECCSCCCTTCEEEEEEEEEETTEECCCEEEEEESSCCCCSSCCCEE--EEEECSSCEEEEECC
T ss_pred             CCCCcCeEEccCCCcceEEecCcCCccEEEEEEEEEeCCcccccEEEEeEccccCCCCCCeee--EeeccCCEEEEEEcC
Confidence            11111222223334556777889988888899999998875442 3333322   22 22222  234667899999994


Q ss_pred             ----CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEec
Q psy12131        165 ----DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFAT  240 (245)
Q Consensus       165 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t  240 (245)
                          ..++++.+|.|.|+...  ..|.........        ..+.+.+|.+++.|.|+|.|.|..| |..|..+.++|
T Consensus       220 ~~~~~~~g~i~~Y~v~~~~~~--~~~~~~~~~~~~--------~~~~~~~L~p~t~Y~~~V~A~n~~G-g~~s~~~~~~T  288 (290)
T 3l5i_A          220 LPVDVQNGFIRNYTIFYRTII--GNETAVNVDSSH--------TEYTLSSLTSDTLYMVRMAAYTDEG-GKDGPEFTFTT  288 (290)
T ss_dssp             CCHHHHSSCCCEEEEEEEETT--SCCEEEEEETTC--------SEEEECSCCTTCEEEEEEEEEETTE-EEECCCEEEEC
T ss_pred             CChhccCCEEEEEEEEEEeCC--CCeEEEEeCCCc--------eEEEeCCCCCCCEEEEEEEEEeCCC-CCCCCceEeec
Confidence                34678999999999854  445544443333        6899999999999999999999999 88999999998


Q ss_pred             CC
Q psy12131        241 EG  242 (245)
Q Consensus       241 ~~  242 (245)
                      ++
T Consensus       289 ~~  290 (290)
T 3l5i_A          289 PK  290 (290)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=1.6e-14  Score=92.09  Aligned_cols=101  Identities=18%  Similarity=0.193  Sum_probs=76.5

Q ss_pred             EEEEEecCC-eEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEE-ecCceeEEEEccCCCCCCeE
Q psy12131         42 FIVNVIYPP-EVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMH-VSSEKHSLLVRHIKDTDFGN  119 (245)
Q Consensus        42 ~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~  119 (245)
                      +.|.|..+| .+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+....++.+. ..+....|.|.++..+|.|.
T Consensus         5 a~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   84 (115)
T 2cr6_A            5 SSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGT   84 (115)
T ss_dssp             CCCCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEE
T ss_pred             EEEEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEE
Confidence            445666655 6666777888999999999999999999999999999988877666554 33556689999999999999


Q ss_pred             EEEEEEeCCceeEEEEEEEecCCCCcc
Q psy12131        120 YMCQASNNLGSSQQFIQLSGIPNIPVF  146 (245)
Q Consensus       120 y~C~~~n~~g~~~~~~~~~~~~~~p~~  146 (245)
                      |.|.+    |.....+.|.+...|..+
T Consensus        85 Y~C~~----g~~~~~~~L~V~~~p~~~  107 (115)
T 2cr6_A           85 IYFEA----GDQRASAALRVTEKPSVF  107 (115)
T ss_dssp             EEEEE----TTEECCEEEEEECCSSCC
T ss_pred             EEEEE----CCeeEEEEEEEECCCcee
Confidence            99993    334444555555444433

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.51  E-value=2.4e-12  Score=93.73  Aligned_cols=177  Identities=10%  Similarity=0.056  Sum_probs=105.7

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeec--CCCeEEEEECC--EE---e--------------ccCCcEEEEe--cCcee
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYAN--PPAKVEWFRDG--TA---I--------------TLGGRIDMHV--SSEKH  105 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~~~w~~~~--~~---~--------------~~~~~~~~~~--~~~~~  105 (245)
                      +|.+...+..+.+.+|+.+.|.|.+.+.  +.+.+.|++..  ..   +              ....++.+..  .....
T Consensus         6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   85 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA   85 (256)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred             ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence            4556666778889999999999999873  56789999721  11   0              0123555542  34456


Q ss_pred             EEEEccCCCCCCeEEEEEEEeC------------CceeEEEEEEEecCC--------------CCcccc---CccccCCC
Q psy12131        106 SLLVRHIKDTDFGNYMCQASNN------------LGSSQQFIQLSGIPN--------------IPVFQK---SSRRLGPD  156 (245)
Q Consensus       106 ~l~i~~~~~~d~g~y~C~~~n~------------~g~~~~~~~~~~~~~--------------~p~~~~---~~~~~~~~  156 (245)
                      .|.|.+++.+|.|.|.|.+.|.            .+.......|.+...              ++.+..   ......++
T Consensus        86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~  165 (256)
T 3juy_B           86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGE  165 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTS
T ss_pred             EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCC
Confidence            8999999999999999999986            222222334444332              222211   12356789


Q ss_pred             eeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCC------CCCC---cceeeeEEEecCCCCCceEEEEEEEEecC
Q psy12131        157 GYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSD------GSLA---GPIYTQSYNITGLQLFTQYEASVLAKNRF  227 (245)
Q Consensus       157 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~i~~l~~~~~y~~~v~a~N~~  227 (245)
                      .+.|.|...+.++.. ...||+... +..-..+.....      ....   .......+.|.++...+.+.|.|.|.|..
T Consensus       166 ~v~L~C~~~~~~~~~-~v~W~k~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  243 (256)
T 3juy_B          166 RATFSCRSSHSIRSR-RVAWYQHKP-GQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGAS  243 (256)
T ss_dssp             CEEEEEEESSCCTTC-CEEEEEECT-TSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSS
T ss_pred             CEEEEEEECCCcCCe-eEEEEEECC-CCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCC
Confidence            999999996654311 233555432 111111000000      0000   00112568999999999999999999954

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.51  E-value=6.8e-14  Score=86.77  Aligned_cols=83  Identities=23%  Similarity=0.441  Sum_probs=66.7

Q ss_pred             ceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEE-EEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131         57 QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRID-MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI  135 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  135 (245)
                      ..+.+..|+.+.|.|.+.|.|.|.+.|++++..+....... .........|.|.++...|.|.|.|.+.|..|.....+
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~   95 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   95 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEE
Confidence            45678899999999999999999999999998876543211 11122345799999999999999999999999988877


Q ss_pred             EEEe
Q psy12131        136 QLSG  139 (245)
Q Consensus       136 ~~~~  139 (245)
                      .|.+
T Consensus        96 ~l~V   99 (100)
T 3caf_A           96 HLDV   99 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7765

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=1.2e-13  Score=88.42  Aligned_cols=90  Identities=23%  Similarity=0.296  Sum_probs=74.5

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEecc-CCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      .+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++.+...+   .|.|.++..+|.|.|+|.+.|
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~n   83 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG---VLQIRYAKLGDTGRYTCIAST   83 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETT---EEEEESCCGGGCCCEEEEEEC
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCC---EEEEccCCcCCCEEEEEEEEc
Confidence            467777777778889999999999999999999999999987754 4455544433   799999999999999999999


Q ss_pred             CCceeEEEEEEEec
Q psy12131        127 NLGSSQQFIQLSGI  140 (245)
Q Consensus       127 ~~g~~~~~~~~~~~  140 (245)
                      ..|.....+.|.+.
T Consensus        84 ~~g~~~~~~~l~V~   97 (118)
T 2eo9_A           84 PSGEATWSAYIEVQ   97 (118)
T ss_dssp             SSCEEEEECCEEEE
T ss_pred             CCCcEEEEEEEEEE
Confidence            99987777666654

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.50  E-value=2.6e-13  Score=106.80  Aligned_cols=166  Identities=11%  Similarity=-0.000  Sum_probs=109.7

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      ..+...|....+..|.+++|.|.+.   .+.+.|++++..+...     ...+....|+|.++...|.|.|.|...+...
T Consensus       204 t~i~v~P~~~~v~~Gs~vtl~C~a~---~~~I~W~~ng~~i~~~-----ri~~~~~~L~I~nl~~sd~g~y~~~C~~~~~  275 (488)
T 2q7n_A          204 TETNVFPQDKVVLAGSNMTICCMSP---TKVLSGQIGNTLRPLI-----HLYGQTVAIHILNIPVSENSGTNIIFITDDD  275 (488)
T ss_dssp             SSCCEECTTCEEESSCCCEEEECCS---SCEEEEEETTEECCCE-----ECSSSCEEEECCSCCCCCSSCEEEEEEESSC
T ss_pred             CceEECCCCCEEcCCCCEEEEEECC---CCEEEEEECCEECchh-----hccceEEEEEEeCCCcccCCcEEEEEEcCCe
Confidence            3344555566678999999999988   4699999999876543     1244567899999999988888776664333


Q ss_pred             eeEEEEEEEecCCCCccccCccccCCCeeEEEEEeCCC-----CCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeee
Q psy12131        130 SSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTY-----SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQ  204 (245)
Q Consensus       130 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (245)
                      .....+.+...|.+|....... .....+.++|.+...     .+...|.+.|+..+....|.........       ..
T Consensus       276 i~~~~l~v~~pP~~P~nl~C~~-~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c~~~~~~~~~-------~~  347 (488)
T 2q7n_A          276 VYGTVVFAGYPPDVPQKLSCET-HDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNE-------TY  347 (488)
T ss_dssp             EEEEEEEEECCCCCCCSCEEEB-SSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCCEEEEECSSCCCSS-------CE
T ss_pred             EEEEEEEeeCCCCCCcccEEEE-cCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCCCCCCccccccCCc-------eE
Confidence            3334455555666666554332 356799999998433     2578999998754311223222111011       14


Q ss_pred             EEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        205 SYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       205 ~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      .+.+..+.....|.|+|.|.|..|.+.
T Consensus       348 ~ct~~l~~~~t~Y~f~V~A~N~~G~~~  374 (488)
T 2q7n_A          348 RLGVQMHPGQEIHNFTLTGRNPLGQAQ  374 (488)
T ss_dssp             EEEEECCSSCCCCEEEEEEEETTEEEE
T ss_pred             EEEEcCCCCccEEEEEEEEEeCCCCcc
Confidence            566654444689999999999999843

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.50  E-value=8.5e-14  Score=100.37  Aligned_cols=135  Identities=16%  Similarity=0.135  Sum_probs=84.4

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcCCC-----------C-ceeeEEEEEEe----cCCeEEeecceEEe
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNNIG-----------E-STSKNFIVNVI----YPPEVSVEKQWIHT   61 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~~~-----------~-~~~~~~~l~v~----~~p~~~~~~~~~~~   61 (245)
                      +|+.+..+    ..+|.|.+++.+|+|.|.|.+.+..+           . .......|.|.    .+|.+...+....+
T Consensus        73 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~  152 (239)
T 3tv3_H           73 SRLTLALDTPKNLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKS  152 (239)
T ss_dssp             GGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC
T ss_pred             CCEEEEEECCCCEEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhh
Confidence            46666643    24599999999999999999986521           0 01122356664    35555544433445


Q ss_pred             cCCCeEEEEEEEeec-CCC-eEEEEECCEEeccCCcEEEEecC----ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131         62 APDMRAEIICNVYAN-PPA-KVEWFRDGTAITLGGRIDMHVSS----EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI  135 (245)
Q Consensus        62 ~~g~~~~l~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  135 (245)
                      ..|+.+.|.|.+.+. |.+ .+.|++++..+...........+    ..+.|.|......| |.|+|.+.|..+......
T Consensus       153 ~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~  231 (239)
T 3tv3_H          153 TSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK  231 (239)
T ss_dssp             --TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEE
T ss_pred             ccCCcEEEEEEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEE
Confidence            579999999999884 434 58899987532211000011111    12468888888778 999999999876655444


Q ss_pred             EE
Q psy12131        136 QL  137 (245)
Q Consensus       136 ~~  137 (245)
                      .+
T Consensus       232 ~l  233 (239)
T 3tv3_H          232 RV  233 (239)
T ss_dssp             EC
T ss_pred             Ee
Confidence            43

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.50  E-value=4.1e-13  Score=96.20  Aligned_cols=136  Identities=16%  Similarity=0.201  Sum_probs=87.1

Q ss_pred             cceEEEeec----ceEEEeccCCCCCEEEEEEEEcCCC-----C--ceeeEEEEEEe----cCCeEEeecceEEecCCCe
Q psy12131          2 KEIELLYNR----ESLDLDRVTLKLAGLYQCIASNNIG-----E--STSKNFIVNVI----YPPEVSVEKQWIHTAPDMR   66 (245)
Q Consensus         2 ~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~-----~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~   66 (245)
                      +|+.+..+.    .+|+|.+++.+|+|.|.|.+.+..+     .  .......|.|.    .+|.+........+..|..
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~  145 (230)
T 3n9g_H           66 GRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGT  145 (230)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCE
T ss_pred             CcEEEEecCCCCEEEEEECCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCC
Confidence            467776543    2499999999999999999987531     1  11233456664    3555554333334568999


Q ss_pred             EEEEEEEeec-C-CCeEEEEECCEEeccCCcE--EEEecC----ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131         67 AEIICNVYAN-P-PAKVEWFRDGTAITLGGRI--DMHVSS----EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus        67 ~~l~C~~~~~-~-~~~~~w~~~~~~~~~~~~~--~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      +.|.|.+.+. | .+.+.|  ++..+......  .....+    ..+.|.|......| |.|+|.+.+..+.......+.
T Consensus       146 v~L~C~~~~~~P~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~  222 (230)
T 3n9g_H          146 AALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVE  222 (230)
T ss_dssp             EEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECC
T ss_pred             EEEEEEEEeEECCCEEEEE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEcc
Confidence            9999999874 4 346999  44433211000  001111    12478888888888 999999999887665555554


Q ss_pred             ec
Q psy12131        139 GI  140 (245)
Q Consensus       139 ~~  140 (245)
                      +.
T Consensus       223 v~  224 (230)
T 3n9g_H          223 PK  224 (230)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.50  E-value=9.7e-13  Score=95.19  Aligned_cols=118  Identities=16%  Similarity=0.197  Sum_probs=76.8

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCCCeEEEEE----------------CCEEeccC---CcEEEEe-cCceeEEEEcc
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR----------------DGTAITLG---GRIDMHV-SSEKHSLLVRH  111 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~----------------~~~~~~~~---~~~~~~~-~~~~~~l~i~~  111 (245)
                      +...+..+.+.+|+.+.|.|.+.+.+.+.+.|++                ++......   .++.+.. ......|.|.+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~   83 (246)
T 4dzb_B            4 VSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTS   83 (246)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECS
T ss_pred             cEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECC
Confidence            4455667788999999999999998889999998                22222221   3454432 23466899999


Q ss_pred             CCCCCCeEEEEEEEeCCc----eeEEEEEEEec-----CCCCccccC----ccccCCCeeEEEEEeCCCCC
Q psy12131        112 IKDTDFGNYMCQASNNLG----SSQQFIQLSGI-----PNIPVFQKS----SRRLGPDGYRLVWQVDTYSG  169 (245)
Q Consensus       112 ~~~~d~g~y~C~~~n~~g----~~~~~~~~~~~-----~~~p~~~~~----~~~~~~~~~~l~~~~~~~~~  169 (245)
                      ++.+|.|.|.|.+.+..+    .......+.+.     +.+|.+...    .....+..+.|.|.+.+.+|
T Consensus        84 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p  154 (246)
T 4dzb_B           84 AHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYP  154 (246)
T ss_dssp             CCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBS
T ss_pred             CCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcC
Confidence            999999999999997643    11122233332     123332211    11234789999999965433

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.49  E-value=6.6e-13  Score=82.23  Aligned_cols=88  Identities=15%  Similarity=0.226  Sum_probs=71.6

Q ss_pred             CCeEEeecce-EEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         49 PPEVSVEKQW-IHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        49 ~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      +|.+...+.. ..+..|+.+.|.|.+. .|.+.+.|++++..+....++.+...+....|.|.++..+|.|.|.|.+   
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a---   82 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA---   82 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE---
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE---
Confidence            5666665554 5788999999999998 7889999999999888777888777777778999999999999999999   


Q ss_pred             CceeEEEEEEEecC
Q psy12131        128 LGSSQQFIQLSGIP  141 (245)
Q Consensus       128 ~g~~~~~~~~~~~~  141 (245)
                       |.......|.+..
T Consensus        83 -g~~~~~~~l~V~~   95 (100)
T 2yuv_A           83 -GDEKCSTELFVRS   95 (100)
T ss_dssp             -TTEEEEEEEEECC
T ss_pred             -CCceEEEEEEEec
Confidence             4455555665553

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.49  E-value=1.9e-13  Score=85.95  Aligned_cols=96  Identities=18%  Similarity=0.320  Sum_probs=75.1

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .+|.+...+....+.+|+.+.|.|.+.+.  |.+.|++++..+....++.+...+....|.|.++..+|.|.|+|.+.| 
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-   83 (108)
T 2dm7_A            7 GPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCGQ-   83 (108)
T ss_dssp             CCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEETT-
T ss_pred             CCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEcC-
Confidence            46777666777788999999999999764  789999999888877788777777777899999999999999999955 


Q ss_pred             CceeEEEEEEEecCCCCccccC
Q psy12131        128 LGSSQQFIQLSGIPNIPVFQKS  149 (245)
Q Consensus       128 ~g~~~~~~~~~~~~~~p~~~~~  149 (245)
                         ....+.+.+...|+.+...
T Consensus        84 ---~~~~~~l~V~~~p~~~~~~  102 (108)
T 2dm7_A           84 ---ERTSATLTVRALPARFTEG  102 (108)
T ss_dssp             ---EEEEEECEEECCCSSCCCC
T ss_pred             ---CEEEEEEEEecCCHHHccC
Confidence               3445555555555555443

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.49  E-value=2.3e-13  Score=97.68  Aligned_cols=172  Identities=15%  Similarity=0.093  Sum_probs=97.6

Q ss_pred             cceEEecCCCeEEEEEEEeecCC-C-eEEEEECC--EEe------------ccCCcEEEEecCceeEEEEccCCCCCCeE
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPP-A-KVEWFRDG--TAI------------TLGGRIDMHVSSEKHSLLVRHIKDTDFGN  119 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~-~-~~~w~~~~--~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  119 (245)
                      +....+.+|+.+.|.|.+.+.+. + .+.|+++.  ...            ....++..........|.|.+++.+|.|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            55567889999999999987543 4 79999853  211            01235555444556789999999999999


Q ss_pred             EEEEEEeCCce---eEEEEEEEec--C-CCCccccC---ccccCCCeeEEEEEeCCCCCceEEEEEEEeec-CCCCeEEE
Q psy12131        120 YMCQASNNLGS---SQQFIQLSGI--P-NIPVFQKS---SRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE-ELTPWRNI  189 (245)
Q Consensus       120 y~C~~~n~~g~---~~~~~~~~~~--~-~~p~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  189 (245)
                      |.|.+.|..+.   ......+.+.  + .+|.+...   .....++.+.|.|.+.+..|...-..|+++.. ........
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  185 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETT  185 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEEC
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCcccc
Confidence            99999998762   2222333332  1 23333221   12245779999999976433311223555433 11111100


Q ss_pred             e-eCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        190 V-IPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       190 ~-~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      . ....+  ..-.....+.|......+...|.|.|.|..+.
T Consensus       186 ~~~~~~~--~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  224 (234)
T 2j6e_L          186 KPSKQSN--NKYAASSYLSLTPEQWKSHRSYSCQVTHEGST  224 (234)
T ss_dssp             CCCCCTT--SCCBCCEEECCCGGGTTTSCCEEEEEEBTTBC
T ss_pred             CceECCC--CCEEEEEEEEECHHHcCCCCeEEEEEEeCCCc
Confidence            0 00000  00001134666665555555666669998764

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.49  E-value=3.3e-13  Score=97.19  Aligned_cols=127  Identities=20%  Similarity=0.271  Sum_probs=80.5

Q ss_pred             cceEEEe---ecceEEEeccCCCCCEEEEEEEEcCCC---C-ceeeEEEEEEec------CCeEEee-cceEEecCCCeE
Q psy12131          2 KEIELLY---NRESLDLDRVTLKLAGLYQCIASNNIG---E-STSKNFIVNVIY------PPEVSVE-KQWIHTAPDMRA   67 (245)
Q Consensus         2 ~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~~---~-~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~   67 (245)
                      +|+.+..   +..+|.|.+++.+|+|.|+|.+.+..+   . .......|.|..      +|.+... +....+..|+.+
T Consensus        60 ~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~  139 (238)
T 1bec_A           60 DGYKASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKA  139 (238)
T ss_dssp             TTCEEECCSSSEEEEEESSCCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSC
T ss_pred             ceEEEEecCCCEEEEEEecCCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCce
Confidence            4555543   235799999999999999999998642   1 112234577764      5655543 222334579999


Q ss_pred             EEEEEEeec-CCC-eEEEEECCEEeccCCcEE---E-EecCc---eeEEEEccCCCCC-CeEEEEEEEeCC
Q psy12131         68 EIICNVYAN-PPA-KVEWFRDGTAITLGGRID---M-HVSSE---KHSLLVRHIKDTD-FGNYMCQASNNL  128 (245)
Q Consensus        68 ~l~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~---~-~~~~~---~~~l~i~~~~~~d-~g~y~C~~~n~~  128 (245)
                      .|.|.+.|. |.+ .+.|++++..+.......   . ..++.   .+.|.|......| .|.|+|.+.|..
T Consensus       140 ~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~  210 (238)
T 1bec_A          140 TLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHG  210 (238)
T ss_dssp             SEEEEEEEEBSCCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECC
T ss_pred             EEEEEEeeEeCCCcEEEEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCC
Confidence            999999986 655 999999998876542211   1 11111   1223333333333 678999999974

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.49  E-value=1.2e-13  Score=99.10  Aligned_cols=127  Identities=17%  Similarity=0.170  Sum_probs=80.7

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcC--CCC-ceeeEEEEEEec---------CCeEEee-cceEEecCC
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNN--IGE-STSKNFIVNVIY---------PPEVSVE-KQWIHTAPD   64 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~--~~~-~~~~~~~l~v~~---------~p~~~~~-~~~~~~~~g   64 (245)
                      +|+++..+    ..+|.|.+++.+|+|.|.|.+.+.  ... .......|.|..         +|.+... +....+..|
T Consensus        66 ~R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g  145 (230)
T 1ypz_F           66 KKMEASKNPSASTSILTIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLH  145 (230)
T ss_dssp             SEEEEEECCTTTEEEEEECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHH
T ss_pred             CeEEEEEcCCCCEEEEEECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccC
Confidence            56777643    247999999999999999999974  111 112335677751         2332222 222223458


Q ss_pred             CeEEEEEEEeec-CC-CeEEEEE-CCEEeccCCcEE-EEecC---ceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         65 MRAEIICNVYAN-PP-AKVEWFR-DGTAITLGGRID-MHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        65 ~~~~l~C~~~~~-~~-~~~~w~~-~~~~~~~~~~~~-~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      ..+.|.|.+.+. |. +.+.|++ ++..+....... ...++   ..+.|.|..... + |.|+|.+.|..+.
T Consensus       146 ~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~  216 (230)
T 1ypz_F          146 KTGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK  216 (230)
T ss_dssp             SCEEEEEEEEEESSCCCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred             CcceEEEEEeeecCCCeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence            899999999886 65 5999999 776554221000 11111   124678877765 4 9999999998754

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.49  E-value=1.2e-13  Score=86.56  Aligned_cols=89  Identities=17%  Similarity=0.275  Sum_probs=74.1

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +|.+...+....+.+|+.+.|.|.+.+.+.+ +.|++++..+....++.+...+....|.|.++..+|.|.|.|.+.|..
T Consensus         8 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   86 (106)
T 2dlt_A            8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDGYA   86 (106)
T ss_dssp             CCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEETSC
T ss_pred             CCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEccCC
Confidence            5677777778889999999999999988877 999999998887778777777777899999999999999999999984


Q ss_pred             ceeEEEEEEE
Q psy12131        129 GSSQQFIQLS  138 (245)
Q Consensus       129 g~~~~~~~~~  138 (245)
                      ......+.+.
T Consensus        87 ~~~~~~l~V~   96 (106)
T 2dlt_A           87 LSLSAKLNFL   96 (106)
T ss_dssp             CCCCBCEEEE
T ss_pred             ceEEEEEEEE
Confidence            4444444444

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.49  E-value=4.5e-12  Score=92.24  Aligned_cols=168  Identities=13%  Similarity=0.128  Sum_probs=101.2

Q ss_pred             eEEecCCCeEEEEEEEeecC--CCeEEEEEC--CEE---e--------------ccCCcEEEEec--CceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANP--PAKVEWFRD--GTA---I--------------TLGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~--~~~---~--------------~~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      ...+.+|+.+.|.|.+.+.+  .+.+.|++.  +..   +              ....++.+...  .....|.|.+++.
T Consensus        11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   90 (256)
T 3umt_A           11 LELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTS   90 (256)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCc
Confidence            35588999999999998865  578999972  211   1              01234554432  3356799999999


Q ss_pred             CCCeEEEEEEEeC----CceeEEEEEEEecCC---------------CCccccC---ccccCCCeeEEEEEeCCCCCceE
Q psy12131        115 TDFGNYMCQASNN----LGSSQQFIQLSGIPN---------------IPVFQKS---SRRLGPDGYRLVWQVDTYSGIIQ  172 (245)
Q Consensus       115 ~d~g~y~C~~~n~----~g~~~~~~~~~~~~~---------------~p~~~~~---~~~~~~~~~~l~~~~~~~~~~~~  172 (245)
                      +|.|.|.|.+.|.    .+.......|.+...               +|.+...   .....++.++|.|...+.++.  
T Consensus        91 ~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~--  168 (256)
T 3umt_A           91 EDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGS--  168 (256)
T ss_dssp             GGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTT--
T ss_pred             ccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCc--
Confidence            9999999999987    232233334444421               3332221   235678999999999765433  


Q ss_pred             EEEEEEeecCCCCeEEEeeCCC------CCCC---cceeeeEEEecCCCCCceEEEEEEEEecCC
Q psy12131        173 YLLKFREREELTPWRNIVIPSD------GSLA---GPIYTQSYNITGLQLFTQYEASVLAKNRFG  228 (245)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G  228 (245)
                      ...||+... +..-..+.....      ....   .......|.|.++...+.+.|.|.|.|..+
T Consensus       169 ~v~W~k~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~  232 (256)
T 3umt_A          169 NLNWLQQKP-DGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSP  232 (256)
T ss_dssp             CEEEEEECT-TCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSS
T ss_pred             EEEEEEECC-CCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCC
Confidence            344666432 111110100000      0000   001124689999999999999999999643

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.49  E-value=6.8e-13  Score=83.41  Aligned_cols=92  Identities=14%  Similarity=0.092  Sum_probs=69.7

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCC---CeEEEEECCEEecc---CCcEEEEe---c---CceeEEEEccCCCCC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPP---AKVEWFRDGTAITL---GGRIDMHV---S---SEKHSLLVRHIKDTD  116 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~~~w~~~~~~~~~---~~~~~~~~---~---~~~~~l~i~~~~~~d  116 (245)
                      .|.+...+..+.+..|+.+.|.|.+.|.|.   |.+.|++++.....   ..++.+..   .   .....|.|.++..+|
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence            355666677788899999999999999988   99999997732211   22333321   0   124689999999999


Q ss_pred             CeEEEEEEEeCCceeEEEEEEEec
Q psy12131        117 FGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus       117 ~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      .|.|.|.+.|..|.....+.|.+.
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           84 TGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CEEEEEEEecCCCceEEEEEEEEe
Confidence            999999999999998888887753

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.49  E-value=3.2e-13  Score=97.86  Aligned_cols=130  Identities=15%  Similarity=0.215  Sum_probs=82.4

Q ss_pred             cceEEEeec----ceEEEeccCCCCCEEEEEEEEcCCC---------------------CceeeEEEEEEe----cCCeE
Q psy12131          2 KEIELLYNR----ESLDLDRVTLKLAGLYQCIASNNIG---------------------ESTSKNFIVNVI----YPPEV   52 (245)
Q Consensus         2 ~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~---------------------~~~~~~~~l~v~----~~p~~   52 (245)
                      +|+++..+.    .+|+|.+++.+|+|.|.|.+.+..+                     ........|.|.    .+|.+
T Consensus        65 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v  144 (248)
T 3u2s_H           65 GRLSISRDNSKDTLYLQMNSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSV  144 (248)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEE
T ss_pred             CcEEEEecCCCCEEEEEECCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEE
Confidence            567776432    3599999999999999999986411                     011223456665    35555


Q ss_pred             EeecceEEecCCCeEEEEEEEeec-C-CCeEEEEECCEEecc---------CCcEEEEecCceeEEEEccCCCCCCeEEE
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYAN-P-PAKVEWFRDGTAITL---------GGRIDMHVSSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~~~w~~~~~~~~~---------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      ...+....+..|+.+.|.|.+.+. | ...+.|++++..+..         +..+.+     .+.|.|......+ |.|+
T Consensus       145 ~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~-----~s~L~i~~~~~~~-~~yt  218 (248)
T 3u2s_H          145 FPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL-----SSVVTVPSSSLGT-QTYI  218 (248)
T ss_dssp             EEECCC------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEE-----EEEEEEEGGGBTT-BCCE
T ss_pred             EEeCCCccccCCCcEEEEEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEE-----EEEEEEChhhcCC-CeEE
Confidence            544333445579999999999874 4 347999998753211         112221     2467788877777 9999


Q ss_pred             EEEEeCCceeEEEEEE
Q psy12131        122 CQASNNLGSSQQFIQL  137 (245)
Q Consensus       122 C~~~n~~g~~~~~~~~  137 (245)
                      |.+.|..+.......+
T Consensus       219 C~v~h~~~~~~~~~~l  234 (248)
T 3u2s_H          219 CNVNHKPSNTKVDKKV  234 (248)
T ss_dssp             EEEEEGGGTEEEEEEC
T ss_pred             EEEEECCCCcceEEEE
Confidence            9999987665544443

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.48  E-value=2.8e-14  Score=101.67  Aligned_cols=176  Identities=13%  Similarity=0.093  Sum_probs=100.1

Q ss_pred             eEEecCCCeEEEEEEEeecCC-----CeEEEEECCEEe-------------ccCCcEEEEe---cCceeEEEEccCCCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPP-----AKVEWFRDGTAI-------------TLGGRIDMHV---SSEKHSLLVRHIKDTD  116 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~-----~~~~w~~~~~~~-------------~~~~~~~~~~---~~~~~~l~i~~~~~~d  116 (245)
                      .+.+.+|+.+.|.|.+.+.+.     +.+.|++++...             ....+..+..   ......|.|.++..+|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D   83 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD   83 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence            345779999999999987754     689999976322             1112222211   1125679999999999


Q ss_pred             CeEEEEEEEeCCceeEEEEEEEe--cCCCCccccC--ccccCCCeeEEEEEe-CCCCCceEEEEEEEeec--CCCCeEE-
Q psy12131        117 FGNYMCQASNNLGSSQQFIQLSG--IPNIPVFQKS--SRRLGPDGYRLVWQV-DTYSGIIQYLLKFRERE--ELTPWRN-  188 (245)
Q Consensus       117 ~g~y~C~~~n~~g~~~~~~~~~~--~~~~p~~~~~--~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~-  188 (245)
                      .|.|+|.+.+.. .....+.+.+  .+.+|.+...  .....++.+.|.|.+ .+.++. .+. |++..+  ....... 
T Consensus        84 ~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~-~v~-W~~~~~~~~~~~~~~~  160 (222)
T 4i0k_A           84 EGSYTCFVSIQD-FDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEA-EVF-WKDGQGVPLTGNVTTS  160 (222)
T ss_dssp             CSCEEEEEEECC-CCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCC-EEE-EECTTSCBCCSEEEEE
T ss_pred             CEEEEEEEEeCC-CceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCC-eEE-EEcCCCccCCCCccee
Confidence            999999999863 3333333333  3333443322  234568899999999 544332 222 444222  1111111 


Q ss_pred             EeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCC
Q psy12131        189 IVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEG  242 (245)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~  242 (245)
                      .......      ....+.+.++...+.+.|+|.|.|..|....+..+.+...|
T Consensus       161 ~~~~~~~------~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p  208 (222)
T 4i0k_A          161 QMANERG------LFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQP  208 (222)
T ss_dssp             EEECTTS------CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC--
T ss_pred             EEcCCCC------eEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCc
Confidence            1111111      11234555555566667777799999987776666665444

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.48  E-value=5.3e-13  Score=91.91  Aligned_cols=153  Identities=11%  Similarity=0.082  Sum_probs=96.6

Q ss_pred             ceEEecCCCeEEEEEEEe--ecCCCeEEEEE--CCEEe----------ccCCcEEEEecCceeEEEEccCCCCCCeEEEE
Q psy12131         57 QWIHTAPDMRAEIICNVY--ANPPAKVEWFR--DGTAI----------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC  122 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~--~~~~~~~~w~~--~~~~~----------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  122 (245)
                      ..+.+..|+++.|.|...  +.+.+.+.|++  ++..+          ....++.+..+   .+|.|.+++..|.|.|.|
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~n---gsL~I~~v~~~DsG~Y~c   83 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKN---GTLKIKHLKTDDQDIYKV   83 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTT---SCEEECSCCGGGCEEEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCC---CCEEECCCChhhCEEEEE
Confidence            456678999999999543  24457899999  88766          23445555433   389999999999999999


Q ss_pred             EEEeCCceeE--EEEEEEecC--CCCccccCccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCC
Q psy12131        123 QASNNLGSSQ--QFIQLSGIP--NIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLA  198 (245)
Q Consensus       123 ~~~n~~g~~~--~~~~~~~~~--~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (245)
                      .+.|..|...  ..+.|.+..  ..|.+..     ....+.|.|.+.+.+++ .|. |+++..   ..   .. ..    
T Consensus        84 ~~~n~~g~~~~~~~~~L~V~~~~~~P~i~~-----~~~~v~L~C~~~~~p~~-~~~-W~~~g~---~l---~~-~~----  145 (182)
T 1hnf_A           84 SIYDTKGKNVLEKIFDLKIQERVSKPKISW-----TCINTTLTCEVMNGTDP-ELN-LYQDGK---HL---KL-SQ----  145 (182)
T ss_dssp             EEEETTSCEEEEEEEEEEEECCCCCCEEEE-----ETTTTEEEEECSSCSSC-EEE-EEESSC---EE---EE-ES----
T ss_pred             EEEeCCCceeEEEEEEEEEcCcCCCCEEEE-----ccCcEEEEeEccCCCCC-EEE-EEECCE---EC---CC-CC----
Confidence            9999877643  344555442  2333322     23368999999765433 343 444422   11   11 01    


Q ss_pred             cceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcce
Q psy12131        199 GPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAY  236 (245)
Q Consensus       199 ~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~  236 (245)
                           ..+.+.. ...+.+.|+|.|.|.+|....+..+
T Consensus       146 -----~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          146 -----RVITHKW-TTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             -----SCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             -----cEEEEec-ccCCCcEEEEEEEeCCCCcEEccee
Confidence                 2222222 3566778888899999876554433

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.48  E-value=5.2e-13  Score=97.09  Aligned_cols=126  Identities=17%  Similarity=0.259  Sum_probs=81.0

Q ss_pred             ceEEEeecce-EEEeccCCCCCEEEEEEEEcCCC---C--ceeeEEEEEEe------cCCeEEeec-ceEEecCCCeEEE
Q psy12131          3 EIELLYNRES-LDLDRVTLKLAGLYQCIASNNIG---E--STSKNFIVNVI------YPPEVSVEK-QWIHTAPDMRAEI   69 (245)
Q Consensus         3 ~~~~~~~~~~-L~i~~~~~~d~G~Y~C~~~~~~~---~--~~~~~~~l~v~------~~p~~~~~~-~~~~~~~g~~~~l   69 (245)
                      |+.+..++.. |.|.+++.+|+|.|+|.+.+..+   .  .......|.|.      .+|.+...+ ....+..|..+.|
T Consensus        65 R~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L  144 (253)
T 3to4_D           65 DYLATRVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATL  144 (253)
T ss_dssp             EEEEECCSSSCCEEEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEE
T ss_pred             cEEEEeCCCCeEEEccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEE
Confidence            5665543322 99999999999999999987543   1  12233456665      345544322 2222234689999


Q ss_pred             EEEEee-cCCC-eEEEEECCEEeccCCcEEE---E-----ecCc---eeEEEEccCCCCC-CeEEEEEEEeCC
Q psy12131         70 ICNVYA-NPPA-KVEWFRDGTAITLGGRIDM---H-----VSSE---KHSLLVRHIKDTD-FGNYMCQASNNL  128 (245)
Q Consensus        70 ~C~~~~-~~~~-~~~w~~~~~~~~~~~~~~~---~-----~~~~---~~~l~i~~~~~~d-~g~y~C~~~n~~  128 (245)
                      .|.+.+ .|.+ .+.|++++..+........   .     .++.   .+.|.|......| .|.|+|.+.+..
T Consensus       145 ~C~~~g~~P~~i~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          145 VCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             EEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             EEEEceEECCcEEEEEEECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            999998 5666 8999999988764321100   0     0110   2367777766666 779999999964

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.48  E-value=1.2e-12  Score=95.56  Aligned_cols=176  Identities=12%  Similarity=0.140  Sum_probs=91.8

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--C-E--Eecc-C--------------CcEEE-EecCceeEEE
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--G-T--AITL-G--------------GRIDM-HVSSEKHSLL  108 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~-~--~~~~-~--------------~~~~~-~~~~~~~~l~  108 (245)
                      |.+...+..+.+.+|+.+.|.|.+.+.+.+.+.|++.  + .  .+.. .              ..+.. ........|.
T Consensus         3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (259)
T 3omz_A            3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMI   82 (259)
T ss_dssp             --------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEE
T ss_pred             cccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEE
Confidence            4555566677889999999999999988889999982  1 1  1100 0              11111 1122345799


Q ss_pred             EccCCCCCCeEEEEEEEeCCc---eeEEEEEEEecCC----------------CCccccC---ccccCCCeeEEEEEeCC
Q psy12131        109 VRHIKDTDFGNYMCQASNNLG---SSQQFIQLSGIPN----------------IPVFQKS---SRRLGPDGYRLVWQVDT  166 (245)
Q Consensus       109 i~~~~~~d~g~y~C~~~n~~g---~~~~~~~~~~~~~----------------~p~~~~~---~~~~~~~~~~l~~~~~~  166 (245)
                      |.+++.+|.|.|.|.+.|..+   .......|.+...                ++.+...   .....++.+.|.|...+
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~  162 (259)
T 3omz_A           83 LRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYET  162 (259)
T ss_dssp             ESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEEC
T ss_pred             ECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCC
Confidence            999999999999999998765   2222233333221                1122111   23567899999998865


Q ss_pred             CCCceEEEEEEEeec-CCCCeEEEeeCCCCC-------C--CcceeeeEEEecCCCCCceEEEEEEEEec
Q psy12131        167 YSGIIQYLLKFRERE-ELTPWRNIVIPSDGS-------L--AGPIYTQSYNITGLQLFTQYEASVLAKNR  226 (245)
Q Consensus       167 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-------~--~~~~~~~~~~i~~l~~~~~y~~~v~a~N~  226 (245)
                      ..+.. ...||+... ....+..........       .  ........+.|.++...+.+.|.|.|.+.
T Consensus       163 ~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          163 SWWSY-YIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             CCSSC-EEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             ccCCc-eEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence            32222 334565432 111111110000000       0  00111256899999988888888888754

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.48  E-value=1.1e-13  Score=88.34  Aligned_cols=92  Identities=15%  Similarity=0.172  Sum_probs=68.6

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeec---CCCeEEEEECCEE-ec--cCCcEEEEec--C----ceeEEEEccCCCCCC
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYAN---PPAKVEWFRDGTA-IT--LGGRIDMHVS--S----EKHSLLVRHIKDTDF  117 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~---~~~~~~w~~~~~~-~~--~~~~~~~~~~--~----~~~~l~i~~~~~~d~  117 (245)
                      |.|...|..+.+.+|+.+.|.|.+.+.   |.|.+.|+|+... +.  ...++.+...  .    ....|.|.++...|.
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da   87 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   87 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence            335556677788999999999999875   7899999997421 11  1334444211  1    147899999999999


Q ss_pred             eEEEEEEEeCCceeEEEEEEEecC
Q psy12131        118 GNYMCQASNNLGSSQQFIQLSGIP  141 (245)
Q Consensus       118 g~y~C~~~n~~g~~~~~~~~~~~~  141 (245)
                      |.|+|.+.|..|.....+.|.+..
T Consensus        88 G~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           88 GNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             EEEEEEEECSSCEEEECCEEEEEC
T ss_pred             EEEEEEEEeCCCcEEEEEEEEEEe
Confidence            999999999999888777776654

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=5.8e-14  Score=87.24  Aligned_cols=77  Identities=19%  Similarity=0.330  Sum_probs=66.7

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCC----cEEEEecCceeEEEEccCCCCCCeEEEEEE
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG----RIDMHVSSEKHSLLVRHIKDTDFGNYMCQA  124 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  124 (245)
                      +|.+...+....+.+|+.+.|.|.+.+.| +.+.|++++..+....    ++.+...+....|.|.++..+|.|.|.|.+
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   86 (101)
T 2edk_A            8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVIT   86 (101)
T ss_dssp             CCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEEC
T ss_pred             CCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEE
Confidence            56666667778889999999999999888 9999999998887665    567777777788999999999999999999


Q ss_pred             Ee
Q psy12131        125 SN  126 (245)
Q Consensus       125 ~n  126 (245)
                      .|
T Consensus        87 ~n   88 (101)
T 2edk_A           87 NG   88 (101)
T ss_dssp             SS
T ss_pred             cC
Confidence            98

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=3.8e-13  Score=84.29  Aligned_cols=96  Identities=24%  Similarity=0.347  Sum_probs=74.1

Q ss_pred             cCCCCccccCccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEE
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEA  219 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~  219 (245)
                      .|.+|...... .....++.|.|.+..+.++.+|.|+|+.......|..+..  ..       ...+.+.+|.+++.|.|
T Consensus         7 ~P~~P~~~~~~-~~~~~sv~l~W~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~--~~-------~~~~~i~~L~p~t~Y~~   76 (106)
T 2dju_A            7 GPKPPIDLVVT-ETTATSVTLTWDSGNSEPVTYYGIQYRAAGTEGPFQEVDG--VA-------TTRYSIGGLSPFSEYAF   76 (106)
T ss_dssp             SCCCCEEEEEE-EEETTEEEEEEECCCSSCCSEEEEEEEETTCCSCCCCBCC--CC-------SSEEEEESCCTTCEEEE
T ss_pred             CCcCCCCcEEE-eccCCEEEEEEcCCCCCCceEEEEEEEECCCCCCeEEccC--CC-------ccEEEEeCCCCCcEEEE
Confidence            45555444332 2466799999999767789999999988763445654321  11       26789999999999999


Q ss_pred             EEEEEecCCCCCCCcceEEecCCCCC
Q psy12131        220 SVLAKNRFGWSRPSKAYVFATEGAET  245 (245)
Q Consensus       220 ~v~a~N~~G~~~~s~~~~~~t~~~~~  245 (245)
                      +|.|.|..|.|.+|..+.++|.+++|
T Consensus        77 ~V~A~n~~G~~~~S~~~~~~T~~~~P  102 (106)
T 2dju_A           77 RVLAVNSIGRGPPSEAVRARTGEQSG  102 (106)
T ss_dssp             EEEEECSSCBCCCCCCEEEECCCSSC
T ss_pred             EEEEEeCCccCCCcccEEeEcCCCCC
Confidence            99999999999999999999988754

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=99.47  E-value=2.5e-13  Score=110.47  Aligned_cols=214  Identities=17%  Similarity=0.172  Sum_probs=127.7

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCC-CceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGT   88 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~   88 (245)
                      .+.|+|.++...|.+ |+|.+..... ......+.|.|..+|.             ....|.|...+.....+.|.....
T Consensus        63 ~~~l~i~~~~~~~~~-y~C~~~~~~~~~~~~~~~~l~v~~pP~-------------~P~nl~c~~~~~~~~~~~W~~~~~  128 (589)
T 3l5h_A           63 ASSVTFTDIASLNIQ-LTCNILTFGQLEQNVYGITIISGLPPE-------------KPKNLSCIVNEGKKMRCEWDGGRE  128 (589)
T ss_dssp             CCBCCCCCCCSSCCC-CCCC-CCTTCC-CCCCCCCCCC-CCCC-------------CCEEEEEEEETTSCEEEEEECCSC
T ss_pred             EeEEEEecCCCccee-eEEecccCCCcccEEEeEEEeccCCCC-------------CCEeeEEEECCCceEEEEECCCCc
Confidence            456999999998865 7798873211 1123334455545543             334566666555445566654221


Q ss_pred             EeccCCcEEEE-------------ecCceeEEEEc-cCCCCCCeEEEEEEEeCCceeEE-EEEEE----ecCCCCccccC
Q psy12131         89 AITLGGRIDMH-------------VSSEKHSLLVR-HIKDTDFGNYMCQASNNLGSSQQ-FIQLS----GIPNIPVFQKS  149 (245)
Q Consensus        89 ~~~~~~~~~~~-------------~~~~~~~l~i~-~~~~~d~g~y~C~~~n~~g~~~~-~~~~~----~~~~~p~~~~~  149 (245)
                      .. ....+.+.             ..+....+.+. .+.......|+|.|.|..|.... .+.+.    +.|.||.....
T Consensus       129 ~~-~~~~y~l~~~~~~~~~~~c~~~~~~~~~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s~~~~~~~~~~~~p~pP~~~~~  207 (589)
T 3l5h_A          129 TH-LETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSV  207 (589)
T ss_dssp             CS-SCEEEEECCBCSSSBCCCEECBTTBSSCCBCCSCCCSSSCEEECEEEEESSCCBCCCCEEECGGGSEECCCCCSCEE
T ss_pred             CC-cCceEEEEEEEcCCCcccCCCCCCCcEEEEECCCCchheeEEEEEEEEeCCCCcccccEEEccccEEEcCCCceEEE
Confidence            10 00111111             11112233444 45555667888999999886422 22222    25667655443


Q ss_pred             c-cccCCCeeEEEEEeCC--CCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEec
Q psy12131        150 S-RRLGPDGYRLVWQVDT--YSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNR  226 (245)
Q Consensus       150 ~-~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~  226 (245)
                      . .......+.|+|.++.  +.++..|.++|+... ...|..+.....     ......+.+.+|.+++.|.|+|+|.|.
T Consensus       208 ~~~~~~~~~v~l~W~~p~~~~~~~~~Y~v~~~~~~-~~~w~~~~~~~~-----~~~~~~~~i~~L~p~t~Y~~~V~a~~~  281 (589)
T 3l5h_A          208 INSEELSSILKLTWTNPSIKSVIILKYNIQYRTKD-ASTWSQIPPEDT-----ASTRSSFTVQDLKPFTEYVFRIRCMKE  281 (589)
T ss_dssp             ECTTTCTTCEEEECCCCGGGGTSCEEEEEEEEETT-CSCCBCCCTTSS-----CSCCSEEEECSCCSSCCEEEEEEEEES
T ss_pred             EecCCCCCeEEEEeCCCCCCCeeeEEEEEEECCCC-CCCcEEEccccC-----cCceeEEEECCCCCCCEEEEEEEEEeC
Confidence            2 2356779999999733  467899999999875 567865432111     011267899999999999999999999


Q ss_pred             CCCCCC---CcceEEecCCCC
Q psy12131        227 FGWSRP---SKAYVFATEGAE  244 (245)
Q Consensus       227 ~G~~~~---s~~~~~~t~~~~  244 (245)
                      .|.|.+   |..+.+.|.+.+
T Consensus       282 ~g~g~~S~~S~~~~~~T~~~~  302 (589)
T 3l5h_A          282 DGKGYWSDWSEEASGITYEDR  302 (589)
T ss_dssp             SSCSCCCCCCCCBCCCCCCCC
T ss_pred             CCCCccCCCCCccccccCccC
Confidence            998665   667777776643

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.47  E-value=8e-13  Score=80.35  Aligned_cols=82  Identities=18%  Similarity=0.332  Sum_probs=66.4

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ++.+...|....+..|+.+.|.|.+.|.|.|.+.|++++..+....         ...|.|.++..+|.|.|.|.+.|..
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~a~n~~   73 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET---------KKLYMVPYVDLEHQGTYWCHVYNDR   73 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCC---------SSEEEESSCCGGGCEEEEEEEECSS
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCC---------CCeEEECCCCHHhCEEEEEEEEcCC
Confidence            3555566667778999999999999999999999999998876543         2479999999999999999999998


Q ss_pred             ceeE-EEEEEEe
Q psy12131        129 GSSQ-QFIQLSG  139 (245)
Q Consensus       129 g~~~-~~~~~~~  139 (245)
                      |... ..+.+.+
T Consensus        74 g~~~s~~~~l~V   85 (91)
T 3bfo_A           74 DSQDSKKVEIII   85 (91)
T ss_dssp             CEEECCCEEEEE
T ss_pred             CCEEeeeEEEEE
Confidence            8644 3344444

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.1e-13  Score=86.30  Aligned_cols=78  Identities=13%  Similarity=0.201  Sum_probs=67.0

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCC-CeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPP-AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      +|.+...+....+.+|+.+.|.|.+.+.+. +.+.|++++..+....++.+...+....|.|.++..+|.|.|+|.+.|
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~   86 (104)
T 2eny_A            8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRG   86 (104)
T ss_dssp             CCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETT
T ss_pred             CCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECC
Confidence            445666667788999999999999988775 489999999998888888887777778999999999999999999865

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.47  E-value=7.6e-13  Score=96.16  Aligned_cols=129  Identities=17%  Similarity=0.269  Sum_probs=82.1

Q ss_pred             cceEEEe---ecceEEEeccCCCCCEEEEEEEEcCCC--CceeeEEEEEEe------cCCeEEee-cceEEecCCCeEEE
Q psy12131          2 KEIELLY---NRESLDLDRVTLKLAGLYQCIASNNIG--ESTSKNFIVNVI------YPPEVSVE-KQWIHTAPDMRAEI   69 (245)
Q Consensus         2 ~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~l   69 (245)
                      +|+.+..   +..+|.|.+++.+|+|.|+|.+.+..+  ........|.|.      .+|.+... +....+..|+.+.|
T Consensus        64 ~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L  143 (252)
T 1oga_E           64 EGYSVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATL  143 (252)
T ss_dssp             TTEEECCSSTTBCCEEECSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEE
T ss_pred             CcEEEEecCCCEEEEEECcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEE
Confidence            4566553   235799999999999999999998521  111223456665      35665543 22223346899999


Q ss_pred             EEEEeec-CC-CeEEEEECCEEeccCCcEE---EE----ecCc----eeEEEEccCCCC-CCeEEEEEEEeCCce
Q psy12131         70 ICNVYAN-PP-AKVEWFRDGTAITLGGRID---MH----VSSE----KHSLLVRHIKDT-DFGNYMCQASNNLGS  130 (245)
Q Consensus        70 ~C~~~~~-~~-~~~~w~~~~~~~~~~~~~~---~~----~~~~----~~~l~i~~~~~~-d~g~y~C~~~n~~g~  130 (245)
                      .|.+.+. |. +.+.|++++..+.......   ..    ....    .+.|.|...... +.+.|+|.+.|....
T Consensus       144 ~C~~~g~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  218 (252)
T 1oga_E          144 VCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  218 (252)
T ss_dssp             EEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             EEEEeeEcCCCcEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            9999985 65 4999999998776432110   00    0111    234667665443 578999999997643

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=99.47  E-value=1.4e-10  Score=89.00  Aligned_cols=218  Identities=15%  Similarity=0.088  Sum_probs=136.7

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe-cCCeEEeecce-EEecCCCeEEEEEEEeecCCC---eEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-YPPEVSVEKQW-IHTAPDMRAEIICNVYANPPA---KVEW   83 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~-~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~---~~~w   83 (245)
                      +...+.|.++.+.....|+..|.+..|..  ....+... ..|.   +... ........+.|.+........   .+.|
T Consensus        57 ~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s--~~~~~~~~~~~p~---p~~l~~~~~~~~si~l~W~~~~~~~i~~Y~v~~  131 (375)
T 3t1w_A           57 DQSSCTFDNLSPGLEYNVSVYTVKDDKES--VPISDTIIPEVPQ---LTDLSFVDITDSSIGLRWTPLNSSTIIGYRITV  131 (375)
T ss_dssp             TCCEEEECCCCTTCCEEEEEEEEETTEEC--CCEEEEECCCCCC---CSCCEEECCCSSEEEEECCCCCCTTEEEEEEEE
T ss_pred             CccEEEEcCCcCCCEEEEEEEEEcCCCCC--CcEEeeEcCCCCC---CceEEEEecCCCeEEEEEECCCCCCceEEEEEE
Confidence            44668899999988888888888876542  22333322 2221   1111 122234566666654211111   3444


Q ss_pred             EECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE-EEEecCCCCccccCccccCCCeeEEEE
Q psy12131         84 FRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI-QLSGIPNIPVFQKSSRRLGPDGYRLVW  162 (245)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~l~~  162 (245)
                      ...+..   ..............+.+.++.+.....|+..+.|..|...... .....+.+|..... ......++.|.|
T Consensus       132 ~~~~~~---~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~t~~~~p~~l~~-~~~~~~si~l~W  207 (375)
T 3t1w_A          132 VAAGEG---IPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLRF-TNIGPDTMRVTW  207 (375)
T ss_dssp             EESSSC---CSCEEEEECTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEEE-ESCCSSCEEEEE
T ss_pred             EECCCC---CceeEEEcCCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCeeeeeecCCCCCceeEE-EecccCEEEEEE
Confidence            433221   1112223333456788999999888889999999887644322 22223334433322 235678999999


Q ss_pred             EeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCC
Q psy12131        163 QVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEG  242 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~  242 (245)
                      .+....++.+|.+.|+.......|.........        ..+.+.+|.+++.|.|+|.|.|..|.+.++. ..+.|.+
T Consensus       208 ~~p~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~-~~~~t~p  278 (375)
T 3t1w_A          208 APPPSIDLTNFLVRYSPVKNEEDVAELSISPSD--------NAVVLTNLLPGTEYVVSVSSVYEQHESTPLR-GRQKTGL  278 (375)
T ss_dssp             ECCSSCCCCEEEEEEEEGGGTTCCEEEEECTTC--------CEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEECCC
T ss_pred             cCCCCCCccEEEEEEEeCCCCCCcEEEEcCCCc--------CEEEeCCCCCCCEEEEEEEEEcCCCcCCcee-eEEecCC
Confidence            997667889999999987644567666555443        6899999999999999999999999987654 4445555


Q ss_pred             CC
Q psy12131        243 AE  244 (245)
Q Consensus       243 ~~  244 (245)
                      .+
T Consensus       279 ~~  280 (375)
T 3t1w_A          279 DS  280 (375)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.47  E-value=1.1e-12  Score=93.15  Aligned_cols=111  Identities=17%  Similarity=0.243  Sum_probs=73.5

Q ss_pred             cceEEecCCCeEEEEEEEeecC--CCeEEEEEC--CEEec-----------------cCCcEEEEec--CceeEEEEccC
Q psy12131         56 KQWIHTAPDMRAEIICNVYANP--PAKVEWFRD--GTAIT-----------------LGGRIDMHVS--SEKHSLLVRHI  112 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~--~~~~~-----------------~~~~~~~~~~--~~~~~l~i~~~  112 (245)
                      +....+.+|+.+.|.|.+.+.+  .+.+.|+++  +..+.                 ...++.+...  .....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL   86 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence            3345688999999999999865  579999985  32211                 1234544332  33568999999


Q ss_pred             CCCCCeEEEEEEEeCCc----eeEEEEEEEecC---CCCcccc---CccccCCCeeEEEEEeCC
Q psy12131        113 KDTDFGNYMCQASNNLG----SSQQFIQLSGIP---NIPVFQK---SSRRLGPDGYRLVWQVDT  166 (245)
Q Consensus       113 ~~~d~g~y~C~~~n~~g----~~~~~~~~~~~~---~~p~~~~---~~~~~~~~~~~l~~~~~~  166 (245)
                      +.+|.|.|.|.+.|..+    .....+.+.+..   .+|.+..   ......++.+.|.|.+.+
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g  150 (219)
T 1c1e_H           87 KNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKG  150 (219)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEE
T ss_pred             CcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEccc
Confidence            99999999999999763    111233344332   2233221   123457889999999966

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=3.4e-13  Score=83.41  Aligned_cols=84  Identities=19%  Similarity=0.397  Sum_probs=69.6

Q ss_pred             cceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI  135 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  135 (245)
                      +....+..|+.+.|.|.+.+.| |.+.|++++..+....++.+.    ...|.|.++...|.|.|.|.+.|..|.....+
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~   84 (99)
T 2cr3_A           10 VESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT----GEEVEVQDSVPADSGLYACVTSSPSGSDTTYF   84 (99)
T ss_dssp             EEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC----SSEEEETTCCTTTCEEEEEEEEETTEEEEEEE
T ss_pred             CcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE----CCEEEEccCCHHHCEEEEEEEEeCCceEEEEE
Confidence            3455678999999999999876 799999999887766655543    35899999999999999999999999988888


Q ss_pred             EEEecCCCC
Q psy12131        136 QLSGIPNIP  144 (245)
Q Consensus       136 ~~~~~~~~p  144 (245)
                      .|.+...++
T Consensus        85 ~l~V~~~~~   93 (99)
T 2cr3_A           85 SVNVSDALP   93 (99)
T ss_dssp             EECBCSCCS
T ss_pred             EEEEecCCC
Confidence            888765554

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.46  E-value=1.1e-11  Score=86.55  Aligned_cols=115  Identities=17%  Similarity=0.231  Sum_probs=79.7

Q ss_pred             eEEecCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI  135 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  135 (245)
                      .+.+..|+++.|.|.+ +.|.|  .+.|++.+..+   .+...  ......|.|.+++.+|.|.|.|.+.|..+...+.+
T Consensus        16 ~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~--~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~   89 (210)
T 1gsm_A           16 VVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQS--DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTV   89 (210)
T ss_dssp             EEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEE--ESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             ceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEe--cCCccEEEECccCcccCceEEEEEEeCCCceEEEE
Confidence            3578899999999999 88888  99999854332   12211  23456899999999999999999999988877766


Q ss_pred             EEEec--CCCCccccCccccCCCeeEEEEEeCCCCCc----eEEEEEEEeec
Q psy12131        136 QLSGI--PNIPVFQKSSRRLGPDGYRLVWQVDTYSGI----IQYLLKFRERE  181 (245)
Q Consensus       136 ~~~~~--~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~  181 (245)
                      .|.+.  |..+..... ....++.+ |+|.+.+..|.    ..+. |+++..
T Consensus        90 ~ltV~~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~-Wlk~~~  138 (210)
T 1gsm_A           90 QLLVYAFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFS-LLVGGQ  138 (210)
T ss_dssp             EEEEEBCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEE-EEETTE
T ss_pred             EEEEEecCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEE-EEECCE
Confidence            66654  322222222 34556777 99999665443    2333 555544

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.46  E-value=2.3e-13  Score=84.85  Aligned_cols=74  Identities=18%  Similarity=0.366  Sum_probs=65.5

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEE
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ  123 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  123 (245)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+ +.|++++..+....++.+...+....|.|.++..+|.|.|.|.
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2e7b_A            8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS   81 (103)
T ss_dssp             CCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE
T ss_pred             CCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE
Confidence            5666666677888999999999999999888 9999999988877788887777778899999999999999998

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.46  E-value=4.4e-13  Score=85.99  Aligned_cols=97  Identities=18%  Similarity=0.252  Sum_probs=73.6

Q ss_pred             cCCCCccccCccccCCCeeEEEEEeCC---CCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCce
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQVDT---YSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ  216 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  216 (245)
                      .|.+|............++.|.|.+..   +.++.+|.|+++.......|..+.....         ..+.+.+|.+++.
T Consensus        17 ~P~~P~~~~~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~~~~~~~~~~~---------~~~~v~~L~p~t~   87 (120)
T 2crm_A           17 KPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGAT---------REHLCDRLNPGCF   87 (120)
T ss_dssp             CCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEECSSC---------SEEEECSCCTTSC
T ss_pred             CCCCCCCCEEeeccCCCEEEEEECCCCcCCCCeeeEEEEEEccCCCCcCCEEEEeccc---------cEEEECCCCCCCE
Confidence            344444333222355779999999832   3478999999998753357877644221         6799999999999


Q ss_pred             EEEEEEEEecCCCCCCCcceEEecCCCCC
Q psy12131        217 YEASVLAKNRFGWSRPSKAYVFATEGAET  245 (245)
Q Consensus       217 y~~~v~a~N~~G~~~~s~~~~~~t~~~~~  245 (245)
                      |.|||.|.|..|.|.+|..+.++|.+.+|
T Consensus        88 Y~frV~A~n~~G~s~~S~~~~~~T~~~~p  116 (120)
T 2crm_A           88 YRLRVYCISDGGQSAVSESLLVQTPAVSG  116 (120)
T ss_dssp             EEEEEEEEETTEECCCCCCCCCCCCCCSC
T ss_pred             EEEEEEEEcCCccCCCcccEEEEcCCCCC
Confidence            99999999999999999999999987654

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.46  E-value=1.2e-12  Score=89.39  Aligned_cols=150  Identities=13%  Similarity=0.149  Sum_probs=88.5

Q ss_pred             eEEecCCCeEEEEEEEeecCCCeEEEEECCEEecc------------CCcEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL------------GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      .+.+..|++++|.|.+. .|.+.+.|++++..+..            ..+..+  ...+..|.|.+++..|.|.|.|.+.
T Consensus         4 ~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~--~~~~~sL~I~~v~~~DsG~Y~C~~~   80 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL--DTVSGSLTIYNLTSSDEDEYEMESP   80 (171)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEE--CTTTCCEEECSCCGGGCEEEEEECT
T ss_pred             EEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEE--eCCCCeEEECCCChhhCceEEEEEe
Confidence            45678999999999985 47789999998764321            112222  2234589999999999999999999


Q ss_pred             eCCceeEEEEEEEecCCCCccccCccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeE
Q psy12131        126 NNLGSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQS  205 (245)
Q Consensus       126 n~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (245)
                      |..|.....+.+...+..|.+.....     ...|.|.+.+.+++ .|. |+++..   ....   ...         ..
T Consensus        81 n~~~~~~~~L~V~~~~~~p~i~~~~~-----~~~L~C~~~~~p~p-~i~-W~~~~~---~l~~---~~~---------~~  138 (171)
T 1ccz_A           81 NITDTMKFFLYVLEMVSKPMIYWECS-----NATLTCEVLEGTDV-ELK-LYQGKE---HLRS---LRQ---------KT  138 (171)
T ss_dssp             TCCSCEEEEEEEECCCCCCEEEEETT-----TTEEEEECSSCSSC-EEE-EEETTE---EEEE---ESS---------SE
T ss_pred             CCCCcEEEEEEEECcCCCCEEEEecC-----CcEEEEEeCCCCCc-EEE-EEECCE---ECcC---Ccc---------eE
Confidence            98873333344433333343332111     13799999765432 333 444322   1111   011         23


Q ss_pred             EEecCCCCCceEEEEEEEEecCCCCCCCc
Q psy12131        206 YNITGLQLFTQYEASVLAKNRFGWSRPSK  234 (245)
Q Consensus       206 ~~i~~l~~~~~y~~~v~a~N~~G~~~~s~  234 (245)
                      +.+......+.|  +|.|.|.+|....+.
T Consensus       139 l~~~~~~~~g~Y--~C~a~N~~~~~~~~~  165 (171)
T 1ccz_A          139 MSYQWTNLRAPF--KCKAVNRVSQESEME  165 (171)
T ss_dssp             EEEECSCCSSCE--EEEEEETTEEEEEEE
T ss_pred             EEEeccCCCceE--EEEEEcccCccccee
Confidence            334333333355  555999998754433

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.4e-12  Score=82.63  Aligned_cols=80  Identities=18%  Similarity=0.316  Sum_probs=65.6

Q ss_pred             EecCCeEEeecce---EEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEE
Q psy12131         46 VIYPPEVSVEKQW---IHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC  122 (245)
Q Consensus        46 v~~~p~~~~~~~~---~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  122 (245)
                      |..+|.+...+..   +.+..|+.+.|.|.+. .|.+.+.|++++..+....++.+...+....|.|.++..+|.|.|.|
T Consensus         7 v~~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   85 (113)
T 2cpc_A            7 GTDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLC   85 (113)
T ss_dssp             CCSCSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEE
T ss_pred             cccCCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEE
Confidence            3455555444433   5677999999999995 78889999999999887777777766666799999999999999999


Q ss_pred             EEEe
Q psy12131        123 QASN  126 (245)
Q Consensus       123 ~~~n  126 (245)
                      .+.|
T Consensus        86 ~a~n   89 (113)
T 2cpc_A           86 EIDD   89 (113)
T ss_dssp             ESSS
T ss_pred             EEec
Confidence            9999

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1e-12  Score=81.82  Aligned_cols=93  Identities=16%  Similarity=0.260  Sum_probs=72.6

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +|.+...+....+.+|+.+.|.|. .+.|.+.+.|++++..+....++.+...+....|.|.++..+|.|.|+|.+  ..
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~--g~   84 (103)
T 2dku_A            8 ANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCDI--GQ   84 (103)
T ss_dssp             CCCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEEC--SS
T ss_pred             CCEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEEe--CC
Confidence            566666677788899999999999 578889999999999888777887776666778999999999999999982  22


Q ss_pred             ceeEEEEEEEecCCCC
Q psy12131        129 GSSQQFIQLSGIPNIP  144 (245)
Q Consensus       129 g~~~~~~~~~~~~~~p  144 (245)
                      ......+.+...|.+|
T Consensus        85 ~~~~~~l~V~~~p~~p  100 (103)
T 2dku_A           85 AQSRAQLLVQGRRSGP  100 (103)
T ss_dssp             CBCCEEEEEECSCCCC
T ss_pred             ceEEEEEEEeCccCCC
Confidence            2233455555555554

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.46  E-value=3.9e-11  Score=86.54  Aligned_cols=182  Identities=9%  Similarity=0.130  Sum_probs=101.3

Q ss_pred             EEeecceEEecCCCeEEEEEEEeec--CCCeEEEEECC--E---Eec--------------cCCcEEEEecC--ceeEEE
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYAN--PPAKVEWFRDG--T---AIT--------------LGGRIDMHVSS--EKHSLL  108 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~~~w~~~~--~---~~~--------------~~~~~~~~~~~--~~~~l~  108 (245)
                      +...+..+.+.+|+.+.|.|.+.+.  +.+.+.|++..  .   .+.              ...++.+....  ....|.
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   83 (242)
T 1hxm_B            4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT   83 (242)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred             cCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEE
Confidence            4445667788899999999999875  56789999832  1   110              23455554322  467899


Q ss_pred             EccCCCCCCeEEEEEEEeCCc-----e----eEEEEEEEecCC----CCc---cccC-ccccCCCeeEEEEEeCCCCCce
Q psy12131        109 VRHIKDTDFGNYMCQASNNLG-----S----SQQFIQLSGIPN----IPV---FQKS-SRRLGPDGYRLVWQVDTYSGII  171 (245)
Q Consensus       109 i~~~~~~d~g~y~C~~~n~~g-----~----~~~~~~~~~~~~----~p~---~~~~-~~~~~~~~~~l~~~~~~~~~~~  171 (245)
                      |.+++.+|.|.|.|.+.+...     .    ....+.+...+.    +|.   +... .....++.+.|.|.+.+..|..
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~  163 (242)
T 1hxm_B           84 IHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDV  163 (242)
T ss_dssp             ECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCC
T ss_pred             ECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCC
Confidence            999999999999999998531     1    112334433221    221   1111 1223578999999996543321


Q ss_pred             EEEEEEEeecCC--CCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEE
Q psy12131        172 QYLLKFREREEL--TPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVF  238 (245)
Q Consensus       172 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~  238 (245)
                      -...|+++....  ...........+   .-.....+.|........|  .|.|.|..|....+..+.+
T Consensus       164 ~~v~W~~~~~~~l~~~~~~~~~~~~~---~~~~~s~L~i~~~~~~g~y--~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          164 IKIHWEEKKSNTILGSQEGNTMKTND---TYMKFSWLTVPEKSLDKEH--RCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             EEEEEEESSSCCCCCCEECCCEECSS---SEEEEEEEEECTGGGGSCE--EEEEEETTSGGGSCEEEEE
T ss_pred             eEEEEEcCCCEeecCccccceecCCC---cEEEEEEEEEccccCCCEE--EEEEEeCCCCCCceeEeec
Confidence            122344443200  000000000110   0011235666655543455  5559999987766655554

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.46  E-value=1.9e-13  Score=86.98  Aligned_cols=83  Identities=14%  Similarity=0.202  Sum_probs=67.0

Q ss_pred             ccCCCeeEEEEEeCCC------CC-ceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEE
Q psy12131        152 RLGPDGYRLVWQVDTY------SG-IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAK  224 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~  224 (245)
                      ....+++.|.|.++.+      .+ +..|.|+ +.......|..+.....         ..+++.+|.+++.|.|||+|.
T Consensus        26 ~vt~~Sv~LsW~~p~~~g~~~g~~~I~~Y~ve-~~~~~~~~~~~v~~~~~---------t~~~v~gL~p~t~Y~frV~A~   95 (120)
T 1wfu_A           26 KVTHHSIELYWDLEQKEKRQGPQEQWLRFSIE-EEDPKMHSYGVIYTGYA---------TRHVVEGLEPRTLYKFRLKVT   95 (120)
T ss_dssp             CEETTEEEEECTTTSCSCCCSCGGGCCEEEEE-EECTTTCCEEEEEEESC---------SEEEEESCCTTCEEEEEEEEE
T ss_pred             eEECCEEEEEECCCccCCccCCCCceEEEEEE-EecCCCCceEEEecCCc---------cEEEECCCCCCCEEEEEEEEE
Confidence            4678899999998332      24 8899999 44334677877654322         569999999999999999999


Q ss_pred             ecCCCCCCCcceEEecCCCC
Q psy12131        225 NRFGWSRPSKAYVFATEGAE  244 (245)
Q Consensus       225 N~~G~~~~s~~~~~~t~~~~  244 (245)
                      |..|.|.+|..+.++|...|
T Consensus        96 n~~G~s~~S~~~~~~T~~~p  115 (120)
T 1wfu_A           96 SPSGEYEYSPVVSVATTRES  115 (120)
T ss_dssp             CSSSCEEECCCEEEECCCCC
T ss_pred             CCCCCCCCCccEeeEcCCCC
Confidence            99999999999999998864

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.46  E-value=4.2e-12  Score=93.81  Aligned_cols=169  Identities=12%  Similarity=0.153  Sum_probs=101.2

Q ss_pred             cceEEecCCCeEEEEEEEeecC--CCeEEEEECC--EEe-----------------ccCCcEEEEe--cCceeEEEEccC
Q psy12131         56 KQWIHTAPDMRAEIICNVYANP--PAKVEWFRDG--TAI-----------------TLGGRIDMHV--SSEKHSLLVRHI  112 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~~--~~~-----------------~~~~~~~~~~--~~~~~~l~i~~~  112 (245)
                      +....+.+|+.+.|.|.+.+.+  .+.+.|++..  ...                 ....++.+..  ......|.|.++
T Consensus        33 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  112 (282)
T 1qok_A           33 SGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSL  112 (282)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcC
Confidence            4456788999999999998775  5789999843  111                 0124555543  234578999999


Q ss_pred             CCCCCeEEEEEEEeCCc---e--eEE--EEEEEecC------------CCCcccc---CccccCCCeeEEEEEeCCCCCc
Q psy12131        113 KDTDFGNYMCQASNNLG---S--SQQ--FIQLSGIP------------NIPVFQK---SSRRLGPDGYRLVWQVDTYSGI  170 (245)
Q Consensus       113 ~~~d~g~y~C~~~n~~g---~--~~~--~~~~~~~~------------~~p~~~~---~~~~~~~~~~~l~~~~~~~~~~  170 (245)
                      +.+|.|.|.|.+.|..|   .  ...  .+.+...+            .++.+..   ......++.+.|.|...+.++ 
T Consensus       113 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~-  191 (282)
T 1qok_A          113 TSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSVS-  191 (282)
T ss_dssp             CGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCCS-
T ss_pred             ChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCCc-
Confidence            99999999999999865   1  111  33333322            1222211   123567899999999966543 


Q ss_pred             eEEEEEEEeec-CCCCeEEEee----CCCCCCC---cceeeeEEEecCCCCCceEEEEEEEEecC
Q psy12131        171 IQYLLKFRERE-ELTPWRNIVI----PSDGSLA---GPIYTQSYNITGLQLFTQYEASVLAKNRF  227 (245)
Q Consensus       171 ~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~---~~~~~~~~~i~~l~~~~~y~~~v~a~N~~  227 (245)
                        ...||+... ....+.....    .......   .......+.|.++...+...|.|.|.|..
T Consensus       192 --~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  254 (282)
T 1qok_A          192 --YMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSY  254 (282)
T ss_dssp             --CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             --eEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCC
Confidence              234566421 1111110000    0000000   00113578999999999999999999853

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.46  E-value=2e-13  Score=95.96  Aligned_cols=155  Identities=14%  Similarity=0.150  Sum_probs=91.8

Q ss_pred             ecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEe-
Q psy12131         61 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSG-  139 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~-  139 (245)
                      +..|+.+.|.|.+   |.+.+.|++++..+...       ......|.|.++..+|.|.|+|.+.+..+ ....+.+.. 
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~-------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s-~~~~v~v~~~   83 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL-------TEDKKKWNLGSNAKDPRGMYQCKGSQNKS-KPLQVYYRMG   83 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE-------ESSCCCEEEEEGGGCCEEEEEEESSSSCC-CCEEEEEEC-
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC-------CCCCCeEEeCCCCcCCCEEEEEEecCCCC-eeEEEEEEEe
Confidence            3579999999998   78899999999876532       11345799999999999999999766432 222222220 


Q ss_pred             -----c-------------------C---CCCcccc-Cccc-cCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEe
Q psy12131        140 -----I-------------------P---NIPVFQK-SSRR-LGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIV  190 (245)
Q Consensus       140 -----~-------------------~---~~p~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (245)
                           .                   .   .++.+.. .... ..|+.+.|.|.  +.+.. . ..|+++..      .+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~--g~p~p-~-i~W~k~~~------~l~  153 (204)
T 1sy6_A           84 SADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCP--QYPGS-E-ILWQHNDK------NIG  153 (204)
T ss_dssp             -----------------------------------CCCCEEEEETTEEEEECS--CCCSS-C-EEEEETTE------EES
T ss_pred             ccccccccccccccccccccccccccccccccceecCCceeeecCCcEEEEcC--CCCCC-c-eEEEECCE------ECC
Confidence                 0                   0   0111111 1122 37899999999  33222 2 23444432      000


Q ss_pred             eCCCCCCCcceeeeEEEecCC-CCCceEEEEEEEEecCCCCCCCcceEE
Q psy12131        191 IPSDGSLAGPIYTQSYNITGL-QLFTQYEASVLAKNRFGWSRPSKAYVF  238 (245)
Q Consensus       191 ~~~~~~~~~~~~~~~~~i~~l-~~~~~y~~~v~a~N~~G~~~~s~~~~~  238 (245)
                      ...... .-......|.|.++ ...+.+.|+|.|.|..|.. .+..+.+
T Consensus       154 ~~~~~~-~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~-~s~~l~l  200 (204)
T 1sy6_A          154 GDEDDK-NIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPED-ANFYLYL  200 (204)
T ss_dssp             CCTTCT-TEEEETTEEEETTCCHHHHCEEEEEEETTSCGGG-SSCEEEE
T ss_pred             CccCCc-eEecCCCEEEEeeCCccccCEEEEEEeccCCCCc-eeEEEEE
Confidence            000000 00001257899999 8888999999999999963 3444443

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.45  E-value=7.8e-13  Score=94.64  Aligned_cols=122  Identities=12%  Similarity=0.237  Sum_probs=78.7

Q ss_pred             cceEEecCCCeEEEEEEEeecCC-CeEEEEECCEE-----ec----cCCcE--EEE----------ecCceeEEEEccCC
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPP-AKVEWFRDGTA-----IT----LGGRI--DMH----------VSSEKHSLLVRHIK  113 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~-~~~~w~~~~~~-----~~----~~~~~--~~~----------~~~~~~~l~i~~~~  113 (245)
                      +..+.+.+|+.+.|.|.+.+.+. +.+.|++++..     +.    ....+  .+.          .. ....|.|.++.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~L~i~~v~   85 (231)
T 2pet_A            7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLD-SQGRLVLAEAQ   85 (231)
T ss_dssp             CSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEEC-TTCCEEESSCC
T ss_pred             CCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccC-CCceEEEcccC
Confidence            44567889999999999998885 89999975432     11    11111  111          11 22349999999


Q ss_pred             CCCCeEEEEEEEeCC-ceeEEEEEEEe--cCCCCccccCc---cccCCCee-EEEEEe-CCCCCceEEEEEEEee
Q psy12131        114 DTDFGNYMCQASNNL-GSSQQFIQLSG--IPNIPVFQKSS---RRLGPDGY-RLVWQV-DTYSGIIQYLLKFRER  180 (245)
Q Consensus       114 ~~d~g~y~C~~~n~~-g~~~~~~~~~~--~~~~p~~~~~~---~~~~~~~~-~l~~~~-~~~~~~~~~~~~~~~~  180 (245)
                      .+|.|.|.|.+.+.. +.....+.+.+  .|..|.+....   ....+..+ .|.|.+ .+.++. .+ .|+++.
T Consensus        86 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p-~i-~W~~~~  158 (231)
T 2pet_A           86 VGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAP-KI-TWYRNG  158 (231)
T ss_dssp             GGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCC-EE-EEEETT
T ss_pred             cccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCC-EE-EEEECC
Confidence            999999999999986 66666655554  44445443332   23466666 999998 555433 22 355543

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.45  E-value=1.8e-13  Score=85.27  Aligned_cols=81  Identities=22%  Similarity=0.228  Sum_probs=66.9

Q ss_pred             CCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeC-CCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        154 GPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIP-SDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       154 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      ..+++.|+|.+  .+++++.+|.|+|+. . ...|..+... ...       ...+.+.+|.++..|.|||.|.|..|.|
T Consensus        19 ~~~sv~L~W~pP~~~~~~I~gY~vey~~-~-~~~W~~~~~~~~~~-------~t~~~v~~L~pg~~Y~FRV~A~n~~G~s   89 (108)
T 1v5j_A           19 TPRGVLLHWDPPELVPKRLDGYVLEGRQ-G-SQGWEVLDPAVAGT-------ETELLVPGLIKDVLYEFRLVAFAGSFVS   89 (108)
T ss_dssp             CSSSEEEEEECCSCCSSCCCBEEEEEEE-T-TCCCEEEEEEECSS-------CCEEECCCCCTTSCEECCBEEEETTEEE
T ss_pred             eCCEEEEEECCCCCCCCCCcEEEEEEEe-C-CCCcEEeeeecCCC-------cCEEEeCCCCCCCEEEEEEEEEcCCCCc
Confidence            35689999998  455789999999998 3 5679865431 111       2789999999999999999999999999


Q ss_pred             CCCcceEEecCCC
Q psy12131        231 RPSKAYVFATEGA  243 (245)
Q Consensus       231 ~~s~~~~~~t~~~  243 (245)
                      .+|+.+.++|.+.
T Consensus        90 ~pS~~~~v~T~~~  102 (108)
T 1v5j_A           90 DPSNTANVSTSGL  102 (108)
T ss_dssp             EECSCCCCCCSSC
T ss_pred             CCCCCEEEEeCCc
Confidence            9999999999874

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.45  E-value=2.8e-13  Score=95.75  Aligned_cols=170  Identities=13%  Similarity=0.068  Sum_probs=96.6

Q ss_pred             cceEEecCCCeEEEEEEEeecCCCeEEEEEC--CEEec------------cCCcEEEEecCceeEEEEccCCCCCCeEEE
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GTAIT------------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~~~~------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      +....+.+|+.+.|.|.+.+.+.+.+.|+++  +..+.            ...++.+...+....|.|.++..+|.|.|.
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            4566788999999999988887788999984  22221            134566555556678999999999999999


Q ss_pred             EEEEeC-Ccee--E--EEEEEEecC-CCCccccC---ccccCCCeeEEEEEeCCCCCc-eEEEEEEEeec--CCCCeEEE
Q psy12131        122 CQASNN-LGSS--Q--QFIQLSGIP-NIPVFQKS---SRRLGPDGYRLVWQVDTYSGI-IQYLLKFRERE--ELTPWRNI  189 (245)
Q Consensus       122 C~~~n~-~g~~--~--~~~~~~~~~-~~p~~~~~---~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~  189 (245)
                      |.+.|. .+..  .  ..+.+...+ .+|.+...   .....+..+.|.|.+.+..|. ..+ .|+++..  ........
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v-~W~k~g~~~~~~~~~~~  164 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATV-TWKANGATINDGVKTTK  164 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEE-EEEETTEEECSSCBCCC
T ss_pred             EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEE-EEEECCeEcCCCeecCC
Confidence            999973 2211  1  233333222 33433321   123457799999999654222 222 3444432  01100000


Q ss_pred             eeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        190 VIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      .....   ..-.....+.|..+...+...|+|.|.|..+.
T Consensus       165 ~~~~~---~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          165 PSKQG---QNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             CBCSS---SCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             ceecC---CCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            00000   00000123455555544455556669999765

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.45  E-value=9.3e-13  Score=80.74  Aligned_cols=74  Identities=23%  Similarity=0.382  Sum_probs=64.3

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEE
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA  124 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  124 (245)
                      |.+...+....+.+|+.+.|.|.+ +.|.+.+.|++++..+....++.+...+....|.|.++..+|.|.|.|.+
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (95)
T 2k1m_A            9 SAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA   82 (95)
T ss_dssp             CCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE
T ss_pred             CeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE
Confidence            445555667788999999999999 78888999999999888777887777777789999999999999999999

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.45  E-value=7e-14  Score=100.73  Aligned_cols=119  Identities=13%  Similarity=0.102  Sum_probs=78.4

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEE--EEecCCeEEeecceEEecCCCeEEEEEEEeec-CC-CeEEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIV--NVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN-PP-AKVEWFR   85 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~w~~   85 (245)
                      +.|.|.+++.+|+|.|+|.+.+..+.. ..+.+.+  .+..+|.+...+.......|+.+.|.|.+.|. |. ..+.|++
T Consensus        82 s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k  161 (239)
T 1i1c_A           82 SELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKM  161 (239)
T ss_dssp             EEEECCHHHHHTTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEEEEhhHccCCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEE
Confidence            469999999999999999999987752 2233333  34467777655433323357899999999984 44 3899999


Q ss_pred             CCEEeccCCcEEE-EecCc----eeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         86 DGTAITLGGRIDM-HVSSE----KHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        86 ~~~~~~~~~~~~~-~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      ++..+........ ...+.    .+.|.|......+.|.|+|.+.|...
T Consensus       162 ~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l  210 (239)
T 1i1c_A          162 NGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL  210 (239)
T ss_dssp             TTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCEECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCC
Confidence            9987743211111 11111    12344444444568999999999764

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.45  E-value=6.2e-12  Score=92.77  Aligned_cols=171  Identities=14%  Similarity=0.124  Sum_probs=99.7

Q ss_pred             cceEEecCCCeEEEEEEEeec--CCCeEEEEECC--EEe-----------------ccCCcEEEE--ecCceeEEEEccC
Q psy12131         56 KQWIHTAPDMRAEIICNVYAN--PPAKVEWFRDG--TAI-----------------TLGGRIDMH--VSSEKHSLLVRHI  112 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~--~~~~~~w~~~~--~~~-----------------~~~~~~~~~--~~~~~~~l~i~~~  112 (245)
                      +..+.+.+|+.+.|.|.+.+.  +.+.+.|++..  ...                 ....++.+.  .......|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            456678899999999999875  55789998732  100                 011345544  2334568999999


Q ss_pred             CCCCCeEEEEEEEeC---------CceeEEEEEEEecC--------------CCCccccC--ccccCCCeeEEEEEeCCC
Q psy12131        113 KDTDFGNYMCQASNN---------LGSSQQFIQLSGIP--------------NIPVFQKS--SRRLGPDGYRLVWQVDTY  167 (245)
Q Consensus       113 ~~~d~g~y~C~~~n~---------~g~~~~~~~~~~~~--------------~~p~~~~~--~~~~~~~~~~l~~~~~~~  167 (245)
                      ..+|.|.|.|.+.+.         .........|.+.+              .++.+...  .....+++++|.|...+.
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~~G~~v~L~C~~~~~  166 (280)
T 3fku_X           87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTCTGNSN  166 (280)
T ss_dssp             CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEECTTCCEEEEEECCCC
T ss_pred             ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEecCCCEEEEEEecCC
Confidence            999999999999986         11111222333333              12222111  345678999999999662


Q ss_pred             CCceEEEEEEEeecCCCCeEEEeeCCCC------CC---CcceeeeEEEecCCCCCceEEEEEEEEecC
Q psy12131        168 SGIIQYLLKFREREELTPWRNIVIPSDG------SL---AGPIYTQSYNITGLQLFTQYEASVLAKNRF  227 (245)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~  227 (245)
                      .+...+..||+... ......+......      ..   ........+.|.++...+...|.|.|.|..
T Consensus       167 ~~~~~~v~W~r~~~-~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          167 NVGNQGAAWLQQHQ-GHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             CCCTTCCEEEEECS-SSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             CCCCceEEEEEECC-CCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            22112334555432 1111000000000      00   000112569999999999999999999976

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.44  E-value=1.4e-12  Score=92.03  Aligned_cols=169  Identities=13%  Similarity=0.099  Sum_probs=93.6

Q ss_pred             ceEEecCCCeEEEEEEEeecC--CCeEEEEEC--CEEec----------------cCCcEEEEe--cCceeEEEEccCCC
Q psy12131         57 QWIHTAPDMRAEIICNVYANP--PAKVEWFRD--GTAIT----------------LGGRIDMHV--SSEKHSLLVRHIKD  114 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~--~~~~~----------------~~~~~~~~~--~~~~~~l~i~~~~~  114 (245)
                      ....+.+|+.+.|.|.+.+.+  .+.+.|+++  +....                ...++.+..  .+....|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   87 (210)
T 3d9a_H            8 GPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTT   87 (210)
T ss_dssp             SCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCc
Confidence            345678999999999999875  378999974  22110                134555543  22356899999999


Q ss_pred             CCCeEEEEEEEeCCce-eEEEEEEEe-cCCCCcccc---CccccCCCeeEEEEEeCCC-CCceEEEEEEEeecCCCCeEE
Q psy12131        115 TDFGNYMCQASNNLGS-SQQFIQLSG-IPNIPVFQK---SSRRLGPDGYRLVWQVDTY-SGIIQYLLKFREREELTPWRN  188 (245)
Q Consensus       115 ~d~g~y~C~~~n~~g~-~~~~~~~~~-~~~~p~~~~---~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  188 (245)
                      +|.|.|.|.+.|.... ....+.+.. .+.+|.+..   ......++.+.|.|.+.+. ++...+ .|+++.. ......
T Consensus        88 ~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v-~W~~~~~-~~~~~~  165 (210)
T 3d9a_H           88 EDTATYYCANWDGDYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTV-TWNSGSL-SSGVHT  165 (210)
T ss_dssp             GGCEEEEEEETTSSCBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEE-EEGGGTB-CTTEEE
T ss_pred             ccCEEEEEEEecCcccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEE-EEeeCCc-ccceEE
Confidence            9999999999986411 112333332 123343221   1234568899999999654 322122 2433322 111000


Q ss_pred             EeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        189 IVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                        ...............+.|......+ ..|.|.|.|..|..
T Consensus       166 --~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~  204 (210)
T 3d9a_H          166 --FPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASST  204 (210)
T ss_dssp             --CCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTE
T ss_pred             --cCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCc
Confidence              0000000000012345666555333 55556699998864

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.44  E-value=2.1e-12  Score=81.04  Aligned_cols=93  Identities=17%  Similarity=0.201  Sum_probs=69.5

Q ss_pred             ecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCE-Eec-------cCCcEEEE-ecCceeEEEEccCCCCCC
Q psy12131         47 IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGT-AIT-------LGGRIDMH-VSSEKHSLLVRHIKDTDF  117 (245)
Q Consensus        47 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~-~~~-------~~~~~~~~-~~~~~~~l~i~~~~~~d~  117 (245)
                      ..+|.+...+....+.+|+.+.|.|.+.+.+.+.+.|++++. .+.       ...++.+. .......|.|.++..+|.
T Consensus         4 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~   83 (108)
T 3m45_A            4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDE   83 (108)
T ss_dssp             ----CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGC
T ss_pred             ccCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHC
Confidence            345666667778889999999999999999989999998764 222       22355443 233467899999999999


Q ss_pred             eEEEEEEEeCCceeEEEEEEEec
Q psy12131        118 GNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus       118 g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      |.|.|.+.| .+.....+.|.+.
T Consensus        84 G~Y~C~~~n-~~~~~~~~~L~V~  105 (108)
T 3m45_A           84 GQYTCSLFT-MPVKTSKAYLTVL  105 (108)
T ss_dssp             EEEEEEECS-SSCEEEEEEEEEE
T ss_pred             eEEEEEEEc-CCCcEEEEEEEEE
Confidence            999999999 7777777777665

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.44  E-value=2.7e-13  Score=96.14  Aligned_cols=125  Identities=20%  Similarity=0.172  Sum_probs=87.0

Q ss_pred             ceEEEe--ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEee----c
Q psy12131          3 EIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA----N   76 (245)
Q Consensus         3 ~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~----~   76 (245)
                      ++.+..  ..+.|.|.+++.+|+|.|+|.|.|..|. ....+.|.|..+|........  ...+..+.|.|....    .
T Consensus        66 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~P~~p~~~~~--~~~~~~~~l~w~~p~~~~~~  142 (215)
T 3mtr_A           66 NIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ-ESLEFILVQADTPSSPSIDQV--EPYSSTAQVQFDEPEATGGV  142 (215)
T ss_dssp             SEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCE-EEEEEEEEECCCCCCCEEEEE--EEETTEEEEEEECCSCCCSS
T ss_pred             cEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCc-eEEEEEEEECCCCCCCcceEE--EEecceEEEEEecCCccCCC
Confidence            445553  3467999999999999999999999988 678888999877765433222  234677888887422    2


Q ss_pred             CCC--eEEEEECCEEeccCCcEEEEe----cCceeEEEEccCCCCCCeEEEEEEEeCCceeEEE
Q psy12131         77 PPA--KVEWFRDGTAITLGGRIDMHV----SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF  134 (245)
Q Consensus        77 ~~~--~~~w~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  134 (245)
                      |..  .+.|.+++..    .+.....    ......+.|.++.+.+.|.|+|.|.|..|....+
T Consensus       143 pi~~y~v~~~~~~~~----~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S  202 (215)
T 3mtr_A          143 PILKYKAEWRAVGEE----VWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEIS  202 (215)
T ss_dssp             CEEEEEEEEEETTCC----CCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCC
T ss_pred             ceEEEEEEEEECCCC----cccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcc
Confidence            222  4778876643    1111111    1112579999999999999999999999876543

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.43  E-value=7.4e-13  Score=83.37  Aligned_cols=85  Identities=25%  Similarity=0.300  Sum_probs=67.8

Q ss_pred             ccCCCeeEEEEEeCC--C-CCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCC
Q psy12131        152 RLGPDGYRLVWQVDT--Y-SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG  228 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G  228 (245)
                      .....++.|.|.+..  + .++.+|.|+|+.......|..+.....         ..+.+.+|.+++.|.|||.|.|..|
T Consensus        18 ~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~---------~~~~v~~L~p~t~Y~frV~A~n~~G   88 (109)
T 1x5x_A           18 KAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGED---------LAYTVKNLRRSTKYKFKVIAYNSEG   88 (109)
T ss_dssp             EECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEEESC---------SEEEEESCCSSCEEEEEEEEECSSC
T ss_pred             EccCCEEEEEEcCCCCCCCCcccEEEEEEecCCCCcceEEeEeCCc---------cEEEECCCCCCCEEEEEEEEEeCCC
Confidence            456789999999832  2 378999999988653345665443222         6799999999999999999999999


Q ss_pred             CCCCCcceEEecCCCCC
Q psy12131        229 WSRPSKAYVFATEGAET  245 (245)
Q Consensus       229 ~~~~s~~~~~~t~~~~~  245 (245)
                      .|.+|..+.++|.+.+|
T Consensus        89 ~s~~S~~~~~~T~~~~P  105 (109)
T 1x5x_A           89 KSNPSEVVEFTTCPDSG  105 (109)
T ss_dssp             EEEECCCEEEECCCCCC
T ss_pred             CcCCccCEEeEeCCCCC
Confidence            99999999999987654

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=99.43  E-value=3e-11  Score=84.89  Aligned_cols=129  Identities=18%  Similarity=0.191  Sum_probs=93.2

Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCceeEEE---EEEEecCC----CCccccCccccCCCeeEEEEEeC----CCCCceEEE
Q psy12131        106 SLLVRHIKDTDFGNYMCQASNNLGSSQQF---IQLSGIPN----IPVFQKSSRRLGPDGYRLVWQVD----TYSGIIQYL  174 (245)
Q Consensus       106 ~l~i~~~~~~d~g~y~C~~~n~~g~~~~~---~~~~~~~~----~p~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~  174 (245)
                      .+.+ ++.+.....|+..|.|..|.....   +.+...+.    +|.... .......++.|.|.+.    .++++.+|.
T Consensus        64 ~~~~-~L~p~t~Y~~~V~A~n~~G~~~~s~~~~~~~T~~~~P~~~P~~~~-~~~~~~~sv~l~W~~p~~~~~ng~i~~Y~  141 (205)
T 1cfb_A           64 SFVV-QMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVV-GQGTEPNNLVISWTPMPEIEHNAPNFHYY  141 (205)
T ss_dssp             EEEE-ECCSSEEEEEEEEEEETTEECCCCCCCCCEEECCCCCSCCCSCCE-EECSSTTCEEEECCCCCGGGTCSSSCEEE
T ss_pred             EEEE-eCCCCCEEEEEEEEEECCccCCCCCCceeEEcCCcCCCCCCeeeE-eecCCCCeEEEEEECCCccccCCCceEEE
Confidence            4555 788877778888899988754332   23332222    232222 2235567899999983    467899999


Q ss_pred             EEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC-CCcceEEecCCC
Q psy12131        175 LKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR-PSKAYVFATEGA  243 (245)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~-~s~~~~~~t~~~  243 (245)
                      +.|+.......|..........       ..+.+.+|.+++.|.|+|.|.|..|.|. .|..+.++|.+.
T Consensus       142 v~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~ss~~v~~~T~e~  204 (205)
T 1cfb_A          142 VSWKRDIPAAAWENNNIFDWRQ-------NNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGED  204 (205)
T ss_dssp             EEEEESSTTCCCEEEEECCTTC-------CEEEECSCCSSCEEEEEEEEEETTEECSSCCCCEEEESSSC
T ss_pred             EEEEECCCCCCcEEEEecCCCc-------cEEEEcCCCCCcEEEEEEEEEcCCCcCCCCCCcEEEecCCC
Confidence            9999876445587776644322       7899999999999999999999999999 578999988764

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=99.43  E-value=2.2e-11  Score=86.10  Aligned_cols=132  Identities=14%  Similarity=0.111  Sum_probs=97.8

Q ss_pred             eeEEEEccCCCCCCeEEEEEEEeCCceeEEE---EEEEec---C----CCCccccCccccCCCeeEEEEEeC---CCCCc
Q psy12131        104 KHSLLVRHIKDTDFGNYMCQASNNLGSSQQF---IQLSGI---P----NIPVFQKSSRRLGPDGYRLVWQVD---TYSGI  170 (245)
Q Consensus       104 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~---~~~~~~---~----~~p~~~~~~~~~~~~~~~l~~~~~---~~~~~  170 (245)
                      ...+.+.++.+...+.|++.|.|..|.....   ..+...   +    .+|.... .......++.|.|.+.   .+.++
T Consensus        69 ~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~s~~s~~~~~~~~~~~~~~~~P~~~~-~~~~~~~sv~l~W~~p~~~~~~~i  147 (214)
T 2ibg_A           69 SFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLE-IEEYSETAVVLHWSLASDADEHLI  147 (214)
T ss_dssp             EEEEEECSCCTTCEEEEEEEEEETTSCEEECCCCCCEECCCSTTSCCCCCCEECC-CBCCSSSCEEEEEECCTTCCGGGC
T ss_pred             ceeEEecCCcCCCEEEEEEEEEecCCCCCCCCCcccEEeccCcCCCCCCCCcccE-EEEccCCeEEEEEeCCCccCCCCc
Confidence            3467899999988899999999987654332   112211   1    1233222 2335667899999985   45788


Q ss_pred             eEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCCC
Q psy12131        171 IQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA  243 (245)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~~  243 (245)
                      .+|.|+|+.......|..+.......       ..+.+.+|.+++.|.|+|.|.|..|.|.+|..+.++|...
T Consensus       148 ~~Y~v~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~p  213 (214)
T 2ibg_A          148 TGYYAYYRPSSSAGEYFKATIEGAHA-------RSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQRP  213 (214)
T ss_dssp             CEEEEEEEETTCCSCCEEEEEECTTC-------CEEEECSCCTTCEEEEEEEEECSSCBCCCCCCEEEECCCC
T ss_pred             ceEEEEEEECCCCcceEEeeccCCcc-------eEEEeCCCCCCCEEEEEEEEEcCCccCCCcceEeeEecCC
Confidence            99999999876336787776544322       6799999999999999999999999999999999999753

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=5.3e-12  Score=80.11  Aligned_cols=84  Identities=24%  Similarity=0.311  Sum_probs=68.3

Q ss_pred             CCCeeEEEEEeC--CCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        154 GPDGYRLVWQVD--TYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       154 ~~~~~~l~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      ...++.|.|.+.  .++++.+|.|+|+...  ....|.........        ..+.|.+|.+++.|.|+|.|.|..|.
T Consensus        23 ~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~V~A~n~~G~   94 (114)
T 2ede_A           23 KPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDR--------LTHQIMDLNLDTMYYFRIQARNSKGV   94 (114)
T ss_dssp             CSSCEEEEEECCSSCSSCCSEEEEEEESCSSSCTTTSEEEEEETTC--------CEEEECSCCSSCEEEEEEEEECSSCB
T ss_pred             CCCEEEEEECCCCCCCCceeEEEEEEEeCCCCCccceEEEEECCCc--------eEEEEcCCCCCCEEEEEEEEEeCCcC
Confidence            567999999983  3467899999998854  23456655444333        78999999999999999999999999


Q ss_pred             CCCCcceEEecCCCCC
Q psy12131        230 SRPSKAYVFATEGAET  245 (245)
Q Consensus       230 ~~~s~~~~~~t~~~~~  245 (245)
                      |.+|..+.++|.+.++
T Consensus        95 g~~S~~~~~~T~~~~p  110 (114)
T 2ede_A           95 GPLSDPILFRTLKVSG  110 (114)
T ss_dssp             CCCCCCEEEECCCSSC
T ss_pred             cCCcccEEEEecCCCC
Confidence            9999999999988754

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.43  E-value=7.9e-13  Score=84.50  Aligned_cols=96  Identities=22%  Similarity=0.320  Sum_probs=73.9

Q ss_pred             cCCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceE
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY  217 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y  217 (245)
                      .|.+|..... ......++.|.|.+  +++.++..|.|+|+.......|..+.....         ..+.+.+|.+++.|
T Consensus        17 ~P~~P~~~~~-~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~---------~~~~v~~L~p~t~Y   86 (118)
T 1x3d_A           17 EPDIPNPPRI-ANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQ---------KQFKITKLSPAMGC   86 (118)
T ss_dssp             CCCCCCCCEE-EEEETTEEEEECCCCCCCSSCEEEEEEEECTTTSSSCCEEEEEESC---------SEEEEESCCTTCEE
T ss_pred             CCcCCCCcEE-eccCCCEEEEEECCCCCCCCcceEEEEEEecCCCCCCeEEeeccCC---------cEEEeCCCCCCCEE
Confidence            3445443332 23567799999998  345688999999988653367876543222         67899999999999


Q ss_pred             EEEEEEEecCCCCCCCcceEEecCCCCC
Q psy12131        218 EASVLAKNRFGWSRPSKAYVFATEGAET  245 (245)
Q Consensus       218 ~~~v~a~N~~G~~~~s~~~~~~t~~~~~  245 (245)
                      .|||.|.|..|.|.+|..+.++|.+.+|
T Consensus        87 ~frV~A~n~~G~s~~S~~~~~~T~~~~P  114 (118)
T 1x3d_A           87 KFRLSARNDYGTSGFSEEVLYYTSGCSG  114 (118)
T ss_dssp             EEECCEEESSCBCCCCCCEEEECSCCCC
T ss_pred             EEEEEEEECCCCCCCccCEEEEcCCCCC
Confidence            9999999999999999999999988754

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.42  E-value=1.3e-11  Score=91.58  Aligned_cols=170  Identities=12%  Similarity=0.072  Sum_probs=101.2

Q ss_pred             cceEEecCCCeEEEEEEEeecC--CCeEEEEECC--EE---ec--------------cCCcEEEEe--cCceeEEEEccC
Q psy12131         56 KQWIHTAPDMRAEIICNVYANP--PAKVEWFRDG--TA---IT--------------LGGRIDMHV--SSEKHSLLVRHI  112 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~~--~~---~~--------------~~~~~~~~~--~~~~~~l~i~~~  112 (245)
                      +..+.+.+|+.+.|.|.+.+.+  .+.+.|++..  ..   +.              ...++.+..  ......|.|.++
T Consensus        29 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  108 (291)
T 2gki_A           29 SGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSL  108 (291)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSC
T ss_pred             CCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcC
Confidence            3456788999999999998776  5789999842  11   10              113444332  234568999999


Q ss_pred             CCCCCeEEEEEEEeCC-c--e--eEEEEEEEecC---------------CCCcccc---CccccCCCeeEEEEEeCCCCC
Q psy12131        113 KDTDFGNYMCQASNNL-G--S--SQQFIQLSGIP---------------NIPVFQK---SSRRLGPDGYRLVWQVDTYSG  169 (245)
Q Consensus       113 ~~~d~g~y~C~~~n~~-g--~--~~~~~~~~~~~---------------~~p~~~~---~~~~~~~~~~~l~~~~~~~~~  169 (245)
                      +.+|.|.|.|.+.|.. |  .  ......|.+..               .++.+..   ......++.+.|.|...+.++
T Consensus       109 ~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~  188 (291)
T 2gki_A          109 TSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLF  188 (291)
T ss_dssp             CGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCE
T ss_pred             CHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccc
Confidence            9999999999999874 2  1  11122344433               1222221   123568999999999966543


Q ss_pred             ce----EEEEEEEeec-CCCCeEEEeeCC----C-CCCC---cceeeeEEEecCCCCCceEEEEEEEEec
Q psy12131        170 II----QYLLKFRERE-ELTPWRNIVIPS----D-GSLA---GPIYTQSYNITGLQLFTQYEASVLAKNR  226 (245)
Q Consensus       170 ~~----~~~~~~~~~~-~~~~~~~~~~~~----~-~~~~---~~~~~~~~~i~~l~~~~~y~~~v~a~N~  226 (245)
                      ..    ....||++.. ....+.. ....    . ....   .......+.|.++...+...|.|.|.|.
T Consensus       189 ~~~~~~~~v~W~k~~~g~~~~~l~-~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~  257 (291)
T 2gki_A          189 NSRTRKNYLAWYQQKPGQSPKLLI-YWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYY  257 (291)
T ss_dssp             ETTTTEECEEEEEECTTSCCEEEE-ETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             cccccceeEEEEEECCCCCcEEEE-EEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccC
Confidence            21    1345666532 1111111 0000    0 0000   0111257899999999999999999995

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.42  E-value=4.6e-13  Score=96.01  Aligned_cols=118  Identities=14%  Similarity=0.139  Sum_probs=78.4

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE----ecCCeEEeecceEEecCCCeEEEEEEEeec-C-CCeEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV----IYPPEVSVEKQWIHTAPDMRAEIICNVYAN-P-PAKVEWF   84 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~~~w~   84 (245)
                      +.|.|.+++.+|+|.|+|.+.+..+. ......+.+    ..+|.+...+.......+..+.|.|.+.|. | .+.+.|+
T Consensus        77 s~L~I~~~~~~D~g~Y~C~~~~~~~~-~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~  155 (231)
T 2w59_A           77 SAVPVSTQDWLSGERFTCTVQHEELP-LPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWL  155 (231)
T ss_dssp             EEEECCHHHHHTTCCEEEEEECTTCS-SCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEEecchhccCCCEEEEEEEcCCCC-CceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEE
Confidence            35999999999999999999987654 222332322    145665543322111235679999999985 4 3689999


Q ss_pred             ECCEEeccCCcEE---EE---------ec-Cc---eeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         85 RDGTAITLGGRID---MH---------VS-SE---KHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        85 ~~~~~~~~~~~~~---~~---------~~-~~---~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      +++..+.......   ..         .+ +.   .+.|.|......|.|.|+|.+.|...
T Consensus       156 k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l  216 (231)
T 2w59_A          156 RDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEAL  216 (231)
T ss_dssp             ETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             ECCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCC
Confidence            9998876543111   11         11 11   24677777777789999999999764

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.42  E-value=1.6e-12  Score=92.87  Aligned_cols=171  Identities=10%  Similarity=0.055  Sum_probs=92.6

Q ss_pred             cceEEecCCCeEEEEEEEeecC--CCeEEEEECC--EE---e---c-----------cCCcEEEEec--CceeEEEEccC
Q psy12131         56 KQWIHTAPDMRAEIICNVYANP--PAKVEWFRDG--TA---I---T-----------LGGRIDMHVS--SEKHSLLVRHI  112 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~~--~~---~---~-----------~~~~~~~~~~--~~~~~l~i~~~  112 (245)
                      +....+.+|+.+.|.|.+.+.+  .+.+.|++..  ..   +   .           ...++.+..+  .....|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (227)
T 1mju_H            7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (227)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence            3456688999999999999876  5789999842  11   1   0           1245555432  34678999999


Q ss_pred             CCCCCeEEEEEEEeCCce-eEEEEEEEecC---CCCcccc---CccccCCCeeEEEEEeCCCCCc-eEEEEEEEeecCCC
Q psy12131        113 KDTDFGNYMCQASNNLGS-SQQFIQLSGIP---NIPVFQK---SSRRLGPDGYRLVWQVDTYSGI-IQYLLKFREREELT  184 (245)
Q Consensus       113 ~~~d~g~y~C~~~n~~g~-~~~~~~~~~~~---~~p~~~~---~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~  184 (245)
                      +.+|.|.|.|.+.+..+. ......|.+..   .+|....   ......++.+.|.|.+.+..|. ..+ .|+++.. ..
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v-~W~~~g~-~~  164 (227)
T 1mju_H           87 TSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTL-TWNSGSL-SS  164 (227)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEE-EEGGGTB-CT
T ss_pred             CcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEE-EEecCCC-cC
Confidence            999999999999986421 11223344432   2333221   1123567899999999654222 122 2444322 11


Q ss_pred             CeEEEeeCCCCCCCcce-eeeEEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12131        185 PWRNIVIPSDGSLAGPI-YTQSYNITGLQLFTQYEASVLAKNRFGWSRP  232 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~  232 (245)
                      ...  ....... .... ....+.|......+ ..|.|.|.|..+....
T Consensus       165 ~~~--~~~~~~~-~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  209 (227)
T 1mju_H          165 GVH--TFPAVLQ-SDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKV  209 (227)
T ss_dssp             TEE--ECCCEEE-TTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEE
T ss_pred             CcE--ECCceec-CCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcce
Confidence            100  0000000 0111 12456777665444 5556669997665433

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.42  E-value=1.1e-12  Score=84.64  Aligned_cols=98  Identities=23%  Similarity=0.289  Sum_probs=73.6

Q ss_pred             cCCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeec--CCCCeEEEeeC--CCCCCCcceeeeEEEecCCCC
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFRERE--ELTPWRNIVIP--SDGSLAGPIYTQSYNITGLQL  213 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~~  213 (245)
                      .|.+|...... .....++.|.|.+  +++.++.+|.|+|+...  ....|..+...  ...       ...+.+.+|.+
T Consensus        17 ~P~~P~~l~~~-~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~~~w~~~~~~~~~~~-------~~~~~v~~L~p   88 (124)
T 1wis_A           17 LPGPPTNLGIS-NIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPD-------ARSMEVPDLNP   88 (124)
T ss_dssp             CCCCCEEEEEE-SCCSSCEEEEEECCCCCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTT-------CSEEEECSCCT
T ss_pred             CCccCCCCEEE-EecCCEEEEEEECCCCCCCcccEEEEEEEECCCCCCCCCeEeeeEccCCC-------ceEEEeCCCCC
Confidence            34555544332 3567899999988  45578999999998841  36778765432  111       16899999999


Q ss_pred             CceEEEEEEEEecCCCCCCCcc-eEEecCCCCC
Q psy12131        214 FTQYEASVLAKNRFGWSRPSKA-YVFATEGAET  245 (245)
Q Consensus       214 ~~~y~~~v~a~N~~G~~~~s~~-~~~~t~~~~~  245 (245)
                      ++.|.|||.|.|..|.|.+|.. ..++|.+.+|
T Consensus        89 ~t~Y~frV~A~N~~G~s~~S~~~~~~~T~~~~P  121 (124)
T 1wis_A           89 FTCYSFRMRQVNIVGTSPPSQPSRKIQTLQSGP  121 (124)
T ss_dssp             TSEECCCCEEECSSCBCCCCCCCCCEECCCSSC
T ss_pred             CCEEEEEEEEEECCccCCCcCCccceEcCCCCC
Confidence            9999999999999999999986 5688887765

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.42  E-value=5.9e-12  Score=79.44  Aligned_cols=92  Identities=22%  Similarity=0.398  Sum_probs=68.8

Q ss_pred             ecCCeEEeecceEEecCCCeEEEEEEEeecC--CCeEEEEECCEEeccCCcEEE-EecC-------ceeEEEEccCCCCC
Q psy12131         47 IYPPEVSVEKQWIHTAPDMRAEIICNVYANP--PAKVEWFRDGTAITLGGRIDM-HVSS-------EKHSLLVRHIKDTD  116 (245)
Q Consensus        47 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~~~~~~~~~~~~~-~~~~-------~~~~l~i~~~~~~d  116 (245)
                      ..+|.+...+....+..|+.+.|.|.+.+.+  .+.+.|++++..+........ ....       ....|.|.++...|
T Consensus         8 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   87 (112)
T 3so5_A            8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTS   87 (112)
T ss_dssp             CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGG
T ss_pred             CCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecccccc
Confidence            3577887777778899999999999998654  579999999988765432111 1111       13689999999999


Q ss_pred             CeEEEEEEEeCCcee-EEEEEEE
Q psy12131        117 FGNYMCQASNNLGSS-QQFIQLS  138 (245)
Q Consensus       117 ~g~y~C~~~n~~g~~-~~~~~~~  138 (245)
                      .|.|.|.+.|..|.. ...+.|.
T Consensus        88 ~G~Y~C~a~n~~g~~~s~~~~l~  110 (112)
T 3so5_A           88 EGXYQCVISNHFGSSYSVXAXLT  110 (112)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCeEEEEEEeCCCcEEEeEEEEE
Confidence            999999999999873 3444443

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.42  E-value=2.4e-12  Score=82.65  Aligned_cols=98  Identities=19%  Similarity=0.260  Sum_probs=72.2

Q ss_pred             cCCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeC-CCCCCCcceeeeEEEecCCCCCce
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIP-SDGSLAGPIYTQSYNITGLQLFTQ  216 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~  216 (245)
                      .|.+|..... ......++.|.|.+  +++.++.+|.|+|+.......|..+... ...       ...+.+.+|.+++.
T Consensus        17 ~P~~P~~~~~-~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~-------~~~~~v~~L~p~t~   88 (121)
T 1x4z_A           17 PPEAPDRPTI-STASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPS-------RLSVEITGLEKGIS   88 (121)
T ss_dssp             CCCCCCCCEE-EECCSSEEEEECCCCCCTTSCCCEEEEEEEESSSCCCCEEEEEEECTT-------CCEEEEESCCTTCE
T ss_pred             CCccCCCCEE-EEccCCEEEEEEECCCCCCCcceEEEEEEEECCCCCceEEeecccCCC-------cCEEEECCCCCCCE
Confidence            3445544332 23567899999997  4456899999999886434678766432 111       17899999999999


Q ss_pred             EEEEEEEEecCCCCCCCcceE-EecCCCCC
Q psy12131        217 YEASVLAKNRFGWSRPSKAYV-FATEGAET  245 (245)
Q Consensus       217 y~~~v~a~N~~G~~~~s~~~~-~~t~~~~~  245 (245)
                      |.|||.|.|..|.|.+|.... +++.+.+|
T Consensus        89 Y~frV~A~n~~G~s~~S~~~~~v~~~~~~P  118 (121)
T 1x4z_A           89 YKFRVRALNMLGESEPSAPSRPYVVSGSGP  118 (121)
T ss_dssp             EEEEEEEEETTEECCCCCCCCCEECCSSCC
T ss_pred             EEEEEEEEcCCCcCCCcCCCCCEEcCCCCC
Confidence            999999999999999998764 66666554

>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.41  E-value=1e-11  Score=78.97  Aligned_cols=86  Identities=20%  Similarity=0.217  Sum_probs=70.7

Q ss_pred             ccCCCeeEEEEEeC-CCCCceEEEEEEEeecC---CCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecC
Q psy12131        152 RLGPDGYRLVWQVD-TYSGIIQYLLKFREREE---LTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF  227 (245)
Q Consensus       152 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~  227 (245)
                      .....++.|+|.+. .++.+.+|.|.|+....   ...|....+.....       ..+.|.+|.+++.|.|+|.|.|..
T Consensus        26 a~sstsi~vsW~~~~~~g~i~gY~V~Y~~~~~~~~~~~~~~~~v~~~~~-------~~~~l~~L~p~T~Y~~~V~A~n~~   98 (120)
T 1ujt_A           26 VLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTE-------RSAVLVNLKKGVTYEIKVRPYFNE   98 (120)
T ss_dssp             CCBTTEEEEEEEESSCCSSCCEEEEEEEESSSSSTTTCCEEEECCCTTC-------CEEEEESCCSSEEEEEEEEEESSS
T ss_pred             EccCceEEEEEccCCCCCcEeeEEEEEEECCCCCCCCccEEEEecCCCc-------CEEEECCCCCCCEEEEEEEEECCC
Confidence            45678999999984 45789999999998752   24676554433322       789999999999999999999999


Q ss_pred             CCCCCCcceEEecCCCC
Q psy12131        228 GWSRPSKAYVFATEGAE  244 (245)
Q Consensus       228 G~~~~s~~~~~~t~~~~  244 (245)
                      |.|.+|..+.++|...+
T Consensus        99 G~Gp~S~~v~~~T~e~v  115 (120)
T 1ujt_A           99 FQGMDSESKTVRTTEES  115 (120)
T ss_dssp             CCCCCCCCEEEEECSSC
T ss_pred             ccCCCCCCEEEECCCCC
Confidence            99999999999999876

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.41  E-value=2.8e-12  Score=80.27  Aligned_cols=83  Identities=20%  Similarity=0.204  Sum_probs=65.8

Q ss_pred             ccCCCeeEEEEEeCC-C-CCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        152 RLGPDGYRLVWQVDT-Y-SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      .....++.|.|.+.. + .++.+|.|+|+...  ..|..+....         ...+.+.+|.+++.|.|||.|.|..|.
T Consensus        18 ~~s~~sv~l~W~~p~~~g~~i~~Y~v~~~~~~--~~~~~~~~~~---------~~~~~v~~L~p~t~Y~frV~A~n~~G~   86 (106)
T 1x4x_A           18 CRSATCAQVNWEVPLSNGTDVTEYRLEWGGVE--GSMQICYCGP---------GLSYEIKGLSPATTYYCRVQALSVVGA   86 (106)
T ss_dssp             EEETTEEEEECCCCSCSSSCCCEEEEEEESST--TSCCEEEEES---------CSEEEEESCCSSCEEEEEEEEECSSCC
T ss_pred             EcCCCEEEEEEcCCCCCCCcceEEEEEEEcCC--CceEEEEeCC---------cceEEEcCCCCCCEEEEEEEEEcCCcC
Confidence            356789999999833 3 48999999998753  3343332211         167899999999999999999999999


Q ss_pred             CCCCcceEEecCCCCC
Q psy12131        230 SRPSKAYVFATEGAET  245 (245)
Q Consensus       230 ~~~s~~~~~~t~~~~~  245 (245)
                      |.+|..+.++|.+.+|
T Consensus        87 g~~S~~v~~~T~~~~P  102 (106)
T 1x4x_A           87 GPFSEVVACVTPPSSG  102 (106)
T ss_dssp             CCBCCCEEEECCCCCS
T ss_pred             CCCcCCEEEECCCCCc
Confidence            9999999999998765

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.41  E-value=2.6e-12  Score=78.74  Aligned_cols=82  Identities=20%  Similarity=0.314  Sum_probs=68.1

Q ss_pred             cceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI  135 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  135 (245)
                      +....+.+|+.+.|.|.+.+  .|.+.|++++..+....++.+.    ...|.|.++..+|.|.|.|.+.|..|.....+
T Consensus         8 p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~   81 (95)
T 4hwu_A            8 PEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLI----GEYLQIKGATPRDSGLYACTAARTVDSETWIF   81 (95)
T ss_dssp             CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEE----TTEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             CCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEe----CCEEEECcCCcccCEEEEEEEccCCCcEEEEE
Confidence            44567889999999999986  5799999999988777666553    24799999999999999999999999888888


Q ss_pred             EEEecCCC
Q psy12131        136 QLSGIPNI  143 (245)
Q Consensus       136 ~~~~~~~~  143 (245)
                      .+.+...+
T Consensus        82 ~l~V~~~~   89 (95)
T 4hwu_A           82 MVNVTDAA   89 (95)
T ss_dssp             EEEECCC-
T ss_pred             EEEEeCCc
Confidence            88776443

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.41  E-value=3.3e-12  Score=93.04  Aligned_cols=134  Identities=16%  Similarity=0.215  Sum_probs=81.4

Q ss_pred             cceEEEeec----ceEEEeccCCCCCEEEEEEEEcCCC---------C-ceeeEEEEEEe----cCCeEEeecceEEecC
Q psy12131          2 KEIELLYNR----ESLDLDRVTLKLAGLYQCIASNNIG---------E-STSKNFIVNVI----YPPEVSVEKQWIHTAP   63 (245)
Q Consensus         2 ~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~---------~-~~~~~~~l~v~----~~p~~~~~~~~~~~~~   63 (245)
                      +|+.+..+.    .+|+|.+++.+|+|.|.|.+.+..+         . .......|.|.    .+|.+........+..
T Consensus        89 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~  168 (256)
T 3sob_H           89 GRFTISADTSKNTAYLQMNSLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTS  168 (256)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----
T ss_pred             CcEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCccccc
Confidence            567776443    3499999999999999999987431         0 11223456665    3455553333334568


Q ss_pred             CCeEEEEEEEeec-C-CCeEEEEECCEEeccCCcE--EEEecC----ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131         64 DMRAEIICNVYAN-P-PAKVEWFRDGTAITLGGRI--DMHVSS----EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI  135 (245)
Q Consensus        64 g~~~~l~C~~~~~-~-~~~~~w~~~~~~~~~~~~~--~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  135 (245)
                      |+.+.|.|.+.+. | .+.+.|  ++..+......  ......    ..+.|.|......| |.|+|.+.+..+......
T Consensus       169 g~~v~L~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~  245 (256)
T 3sob_H          169 GGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK  245 (256)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEE
T ss_pred             CCcEEEEEEEEEEECCCeEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEE
Confidence            9999999999874 4 347999  44333211000  001111    12468888888888 999999999876655544


Q ss_pred             EEE
Q psy12131        136 QLS  138 (245)
Q Consensus       136 ~~~  138 (245)
                      .+.
T Consensus       246 ~~~  248 (256)
T 3sob_H          246 KVE  248 (256)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            443

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.41  E-value=1.5e-12  Score=92.67  Aligned_cols=167  Identities=11%  Similarity=0.077  Sum_probs=95.4

Q ss_pred             eEEecCCCeEEEEEEEeecC--CCeEEEEECC--EE---ec----------------cCCcEEEEec--CceeEEEEccC
Q psy12131         58 WIHTAPDMRAEIICNVYANP--PAKVEWFRDG--TA---IT----------------LGGRIDMHVS--SEKHSLLVRHI  112 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~~--~~---~~----------------~~~~~~~~~~--~~~~~l~i~~~  112 (245)
                      .+.+.+|+.+.|.|.+.+.+  .+.+.|++..  ..   +.                ...++.+...  .....|.|.++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   88 (222)
T 1q9r_B            9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL   88 (222)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcC
Confidence            45678999999999998765  5789999842  11   10                1235555432  34568999999


Q ss_pred             CCCCCeEEEEEEEeCCc-----ee--EEEEEEEecC-CCCccccC---ccccCCCeeEEEEEeCCC-CCceEEEEEEEee
Q psy12131        113 KDTDFGNYMCQASNNLG-----SS--QQFIQLSGIP-NIPVFQKS---SRRLGPDGYRLVWQVDTY-SGIIQYLLKFRER  180 (245)
Q Consensus       113 ~~~d~g~y~C~~~n~~g-----~~--~~~~~~~~~~-~~p~~~~~---~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~  180 (245)
                      +.+|.|.|.|.+.+..+     ..  ...+.+...+ .+|.+...   .....++.+.|.|.+.+. +....+ .|+++.
T Consensus        89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v-~W~~~g  167 (222)
T 1q9r_B           89 RAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTV-TWNSGS  167 (222)
T ss_dssp             CGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEE-EEGGGT
T ss_pred             CcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEE-EEecCC
Confidence            99999999999998654     11  2233333322 23332211   123568899999999654 321122 244332


Q ss_pred             cCCC--CeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        181 EELT--PWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       181 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      ....  ...... ..+    .......+.|......+ ..|.|.|.|..|...
T Consensus       168 ~~~~~~~~~~~~-~~~----~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~  214 (222)
T 1q9r_B          168 LSSGVHTFPAVL-QSD----LYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK  214 (222)
T ss_dssp             BCTTEEEEEEEE-ETT----EEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred             eEcceEeccccc-cCC----cEEEEEEEEECchhcCC-CeEEEEEEccCCCCc
Confidence            2100  011110 000    00111356777776444 556666999998643

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.41  E-value=2.5e-12  Score=90.60  Aligned_cols=125  Identities=13%  Similarity=0.131  Sum_probs=75.6

Q ss_pred             cceEEEee-----cceEEEeccCCCCCEEEEEEEEcCCC---------Cc-eeeEEEEEEecCCeEEeecceEEecCCCe
Q psy12131          2 KEIELLYN-----RESLDLDRVTLKLAGLYQCIASNNIG---------ES-TSKNFIVNVIYPPEVSVEKQWIHTAPDMR   66 (245)
Q Consensus         2 ~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~~~~~~~---------~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~   66 (245)
                      +|+.+..+     ..+|.|.+++.+|+|.|.|.+.+..+         .. ......|.|...+.....| .+.+..+ .
T Consensus        57 ~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P-~v~~~~~-~  134 (207)
T 1ypz_E           57 GRLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKP-SVFIMKN-G  134 (207)
T ss_dssp             TTEEEEECTTTCSEEEEEECSCCGGGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCC-EEEEEEE-T
T ss_pred             CCEEEEeccCCCCEEEEEECCCCHHHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCC-eEEEeCC-C
Confidence            56666643     35699999999999999999997642         10 1133567776422111122 1211112 2


Q ss_pred             EEEEEEEeec-CC-CeEEEEECCEEeccCCcEEEEecCceeEEEEccCCC-CCCeEEEEEEEeCCcee
Q psy12131         67 AEIICNVYAN-PP-AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKD-TDFGNYMCQASNNLGSS  131 (245)
Q Consensus        67 ~~l~C~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~n~~g~~  131 (245)
                      +.|.|.+.+. |. +.+.|+++ ..+............  ..+.+..... .+.|.|+|.+.|..+..
T Consensus       135 ~~l~C~~~g~~P~~~~v~W~~~-~~l~~~~~~~~~~~~--g~y~~~~~~~~~~~~~ytC~v~~~~~~~  199 (207)
T 1ypz_E          135 TNVACLVKDFYPKEVTISLRSS-KKIVEFDPAIVISPS--GKYSAVKLGQYGDSNSVTCSVQHNSETV  199 (207)
T ss_dssp             TEEEEEEEEESSSCCEEEEECS-SEEEECCCEEEECTT--SSEEEEECEEESSTTTCEEEEEETTEEE
T ss_pred             CeEEEEEeeEeCCCeEEEEecC-CcccCCccceEEcCC--CcEEEEEeecccCCCcEEEEEEECCccE
Confidence            6899999875 44 69999998 665543222111211  2344433333 56899999999987643

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}

Probab=99.41  E-value=4.6e-12  Score=79.58  Aligned_cols=94  Identities=19%  Similarity=0.157  Sum_probs=72.4

Q ss_pred             cCCCCccccCcc-ccCCCeeEEEEEeC--CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCce
Q psy12131        140 IPNIPVFQKSSR-RLGPDGYRLVWQVD--TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ  216 (245)
Q Consensus       140 ~~~~p~~~~~~~-~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  216 (245)
                      .|.+|....... .....++.|.|.+.  .++++.+|.|+|+... ...|......          ...+.+.+|.+++.
T Consensus         7 ~P~~P~~l~~~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~-~~~~~~~~~~----------~~~~~l~~L~p~t~   75 (108)
T 2dm4_A            7 GPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSG-SKMWASQRAA----------SNFTEIKNLLVNTL   75 (108)
T ss_dssp             CTTSCEEEEEECCTTCSSCEEEEEECCSCCSSCEEEEEEEEEETT-CSCCEEEEES----------SSEEEECSCCSSCE
T ss_pred             CCcCCcCeEEEEeccCCCEEEEEEcCCCCCCCcEEEEEEEEEECC-CCCeEEecCC----------ccEEEeCCCCCCCE
Confidence            345555443221 14677999999984  4568999999999875 5567655332          16799999999999


Q ss_pred             EEEEEEEEecCCCCCCCcceEEecCCCC
Q psy12131        217 YEASVLAKNRFGWSRPSKAYVFATEGAE  244 (245)
Q Consensus       217 y~~~v~a~N~~G~~~~s~~~~~~t~~~~  244 (245)
                      |.|+|.|.|..|.|.+|..+.++|..+.
T Consensus        76 Y~~~V~A~n~~G~g~~S~~~~~~T~~~~  103 (108)
T 2dm4_A           76 YTVRVAAVTSRGIGNWSDSKSITTIKGS  103 (108)
T ss_dssp             EEEEEEEEESSCEEEECCCEEEECCSCS
T ss_pred             EEEEEEEECCCceeCCCCCEEEECCCCC
Confidence            9999999999999999999999997653

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.41  E-value=4.2e-13  Score=94.55  Aligned_cols=110  Identities=16%  Similarity=0.114  Sum_probs=67.7

Q ss_pred             CCCCEEEEEEEEcCCCCc-eeeEEEE--EEecCCeEEeecceEEecCCCeEEEEEEEeec-CC-CeEEEEECCEEeccCC
Q psy12131         20 LKLAGLYQCIASNNIGES-TSKNFIV--NVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN-PP-AKVEWFRDGTAITLGG   94 (245)
Q Consensus        20 ~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~w~~~~~~~~~~~   94 (245)
                      .+|+|.|+|.|.|..+.. ..+.+.+  .+..+|.+...+.......+..+.|.|.+.|. |. +.+.|++++..+....
T Consensus        77 ~~d~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~  156 (207)
T 1l6x_A           77 WLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK  156 (207)
T ss_dssp             HHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE
T ss_pred             ccCCceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCcc
Confidence            344999999999987652 2233322  34467776654432222346679999999985 44 3899999998765321


Q ss_pred             cEEEE-ecCc----eeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         95 RIDMH-VSSE----KHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        95 ~~~~~-~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      ..... ..+.    .+.|.+......|.|.|+|.+.|...
T Consensus       157 ~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          157 TTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             ECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             ccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCc
Confidence            11111 1111    12344555444578999999999753

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.40  E-value=8.4e-13  Score=84.26  Aligned_cols=87  Identities=21%  Similarity=0.368  Sum_probs=64.1

Q ss_pred             ecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCC-----cEEEEecCceeEEE--EccCCCCCCeE
Q psy12131         47 IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG-----RIDMHVSSEKHSLL--VRHIKDTDFGN  119 (245)
Q Consensus        47 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~-----~~~~~~~~~~~~l~--i~~~~~~d~g~  119 (245)
                      ..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....     .......+....+.  +.++..+|.|.
T Consensus         7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~   86 (117)
T 2v9t_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (117)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEE
T ss_pred             cCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEE
Confidence            357788777778889999999999999999999999999998876442     12222222111111  22557899999


Q ss_pred             EEEEEEeCCceeEE
Q psy12131        120 YMCQASNNLGSSQQ  133 (245)
Q Consensus       120 y~C~~~n~~g~~~~  133 (245)
                      |.|.+.|..|....
T Consensus        87 Y~C~a~N~~G~~~s  100 (117)
T 2v9t_A           87 YVCVARNYLGEAVS  100 (117)
T ss_dssp             EEEEEEETTEEEEC
T ss_pred             EEEEEEeCccceEe
Confidence            99999999997654

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.40  E-value=1.7e-12  Score=80.88  Aligned_cols=78  Identities=14%  Similarity=0.299  Sum_probs=65.0

Q ss_pred             cCCeEEeecce-EEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC-CcEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         48 YPPEVSVEKQW-IHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        48 ~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      .+|.+...+.. ..+.+|+.+.|.|.+ +.|.+.+.|++++..+... .++.+...+....|.|.++..+|.|.|.|.+.
T Consensus        14 ~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   92 (104)
T 1pd6_A           14 KSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG   92 (104)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEET
T ss_pred             CCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEEC
Confidence            45666555444 778899999999999 6888899999999988876 67777766667799999999999999999995


Q ss_pred             e
Q psy12131        126 N  126 (245)
Q Consensus       126 n  126 (245)
                      +
T Consensus        93 ~   93 (104)
T 1pd6_A           93 G   93 (104)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=99.40  E-value=7.8e-10  Score=84.66  Aligned_cols=208  Identities=14%  Similarity=0.118  Sum_probs=127.0

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEE--ecCCCeEEEEEEEeecCCC--eEEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH--TAPDMRAEIICNVYANPPA--KVEWF   84 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~--~~~g~~~~l~C~~~~~~~~--~~~w~   84 (245)
                      ....+.|.++.....-.|+..|.+..|..  .........+|.   .|..+.  ......+.|.+.....+..  .+.|.
T Consensus       147 ~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s--~~~~~~~~~~~~---~P~~l~~~~~~~~sv~l~W~~p~~~i~~Y~v~~~  221 (368)
T 1fnf_A          147 SDNAVVLTNLLPGTEYVVSVSSVYEQHES--TPLRGRQKTGLD---SPTGIDFSDITANSFTVHWIAPRATITGYRIRHH  221 (368)
T ss_dssp             TCCEEEECSCCTTCEEEEEEEEEETTEEC--CCEEEEEECCCC---CCEEEEEESCCSSEEEEEEECCSSCCSEEEEEEE
T ss_pred             CcceEEecCCCCCCEEEEEEEEEeCCCCC--CCeEeeecCCCC---CCCccEEEEccCCEEEEEEeCCCCCcCEEEEEEe
Confidence            34458888888888778888888876643  222222222222   111121  1234566666654321111  23343


Q ss_pred             ECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE-EEEecCCCCccccCccccCCCeeEEEEE
Q psy12131         85 RDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI-QLSGIPNIPVFQKSSRRLGPDGYRLVWQ  163 (245)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~l~~~  163 (245)
                      ..+..   ..............+.+.++.+.....|+..|.|..|...... .....|.+|...... .....++.|.|.
T Consensus       222 ~~~~~---~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~~~~~t~p~~P~~l~~~-~~~~~sv~l~W~  297 (368)
T 1fnf_A          222 PEHFS---GRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSDVPRDLEVV-AATPTSLLISWD  297 (368)
T ss_dssp             CSCCS---SCCEEEEEETTCCEEEEESCCTTCEEEEEEEEEETTEECCCEEEEEECCCCSCEEEEEE-EEETTEEEEEEE
T ss_pred             cCCCC---CCccEEEeCCCcCEEEECCCCCCCEEEEEEEEEeCCccCCcccccccCCCCCCCeeEEE-ecCCCEEEEEee
Confidence            22110   1111222233445788899998888888889999887654433 233445555444332 346789999999


Q ss_pred             eCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCc
Q psy12131        164 VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSK  234 (245)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~  234 (245)
                      +... ++.+|.+.|+.......+.........        ..+.+.+|.+++.|.|+|.|.|..|.|..|.
T Consensus       298 ~p~~-~i~~Y~v~~~~~~~~~~~~~~~~~~~~--------~~~~~~~L~p~t~Y~~~V~A~~~~G~g~~s~  359 (368)
T 1fnf_A          298 APAV-TVRYYRITYGETGGNSPVQEFTVPGSK--------STATISGLKPGVDYTITVYAVTGRGDSPASS  359 (368)
T ss_dssp             CCSS-CCSEEEEEEEETTCCSCCEEEEEETTC--------CEEEECSCCTTCCEEEEEEEECCCSSSCCBC
T ss_pred             CCCC-ccceEEEEEEECCCCCccEEEEcCCCe--------eEEEecCCCCCCEEEEEEEEeCCCCcCcccC
Confidence            8544 588999999886522233333333332        6899999999999999999999999998776

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.40  E-value=5.1e-11  Score=84.66  Aligned_cols=170  Identities=11%  Similarity=0.065  Sum_probs=96.2

Q ss_pred             eEEecCCCeEEEEEEEeecC--CCeEEEEECC--E---Eec--------------cCCcEEEEec--CceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANP--PAKVEWFRDG--T---AIT--------------LGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~~--~---~~~--------------~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      .+.+.+|+.+.|.|.+.+.+  .+.+.|++..  .   .+.              ...++.+...  .....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (220)
T 2fbj_H            9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (220)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCCh
Confidence            46788999999999998765  5789999732  1   110              1245655543  3456899999999


Q ss_pred             CCCeEEEEEEEeCCce---eEEEEEEEecC---CCCcccc--CccccCCCeeEEEEEeCCCCCc-eEEEEEEEeecCCCC
Q psy12131        115 TDFGNYMCQASNNLGS---SQQFIQLSGIP---NIPVFQK--SSRRLGPDGYRLVWQVDTYSGI-IQYLLKFREREELTP  185 (245)
Q Consensus       115 ~d~g~y~C~~~n~~g~---~~~~~~~~~~~---~~p~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~  185 (245)
                      +|.|.|.|.+.+..+.   ......|.+..   .+|.+..  ......++.+.|.|.+.+..|. .-...|+++.. .  
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~-~--  165 (220)
T 2fbj_H           89 EDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGK-D--  165 (220)
T ss_dssp             GGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCS-S--
T ss_pred             hhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeEECCCcEEEEEecCCE-e--
Confidence            9999999999987542   11223444432   2333221  1223567899999999654232 11222444432 1  


Q ss_pred             eEEEeeCCCCCCCccee-eeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        186 WRNIVIPSDGSLAGPIY-TQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~-~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      ................. ...+.|......+...|.|.|.|..|..
T Consensus       166 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~  211 (220)
T 2fbj_H          166 ITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV  211 (220)
T ss_dssp             CEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred             cceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCce
Confidence            11000000000011111 1246666555444455566699998764

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=4.6e-12  Score=81.03  Aligned_cols=94  Identities=19%  Similarity=0.234  Sum_probs=71.3

Q ss_pred             CCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEE
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE  218 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  218 (245)
                      |.+|...... .....++.|.|.+  ..++++.+|.|+|+... ...|.........       ...+.|.+|.+++.|.
T Consensus        18 P~~P~~l~~~-~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~-------~~~~~i~~L~p~t~Y~   88 (119)
T 2ed7_A           18 PSAPRDVVPV-LVSSRFVRLSWRPPAEAKGNIQTFTVFFSREG-DNRERALNTTQPG-------SLQLTVGNLKPEAMYT   88 (119)
T ss_dssp             CCCCSCCEEE-EECSSCEEEECCCCSCCSSCEEEEEEEEEESS-CCCCEEEECCCTT-------CCEEEECSCCSSSEEE
T ss_pred             CcCCcceEEE-ecCCCEEEEEEeCCCCCCCcEEEEEEEEEeCC-CCcceeeEeecCC-------ceEEEeCCCCCCCEEE
Confidence            4444433322 3567899999998  34568999999998865 4445444332222       2789999999999999


Q ss_pred             EEEEEEecCCCCCCCcceEEecCCC
Q psy12131        219 ASVLAKNRFGWSRPSKAYVFATEGA  243 (245)
Q Consensus       219 ~~v~a~N~~G~~~~s~~~~~~t~~~  243 (245)
                      |+|.|.|..|.|.+|..+.++|.+.
T Consensus        89 ~~V~A~n~~G~g~~S~~~~~~T~~~  113 (119)
T 2ed7_A           89 FRVVAYNEWGPGESSQPIKVATQPE  113 (119)
T ss_dssp             ECCEEEESSCBCSCCCCEEEECCCC
T ss_pred             EEEEEEcCCccCCCcCCEEEEeCCC
Confidence            9999999999999999999999875

>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.40  E-value=1e-11  Score=71.50  Aligned_cols=80  Identities=25%  Similarity=0.558  Sum_probs=72.2

Q ss_pred             cCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12131        153 LGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP  232 (245)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~  232 (245)
                      ...++..|+|.++..+++..|++.|+.....+.|+.+.++..-        ++++|.+|+++..|+++|.+.|.+|.++.
T Consensus        18 s~pdsh~iqW~~~s~s~I~eyiL~~R~k~~~g~Wke~~Ip~h~--------nSYtI~GL~P~~~YE~qv~S~~ryG~~Ev   89 (98)
T 1oww_A           18 SQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHL--------NSYTIKGLKPGVVYEGQLISIQQYGHQEV   89 (98)
T ss_dssp             SCTTCEEEEEECCSSSCEEEEEEEEEETTCSSCCEEEEECSSC--------CEEEECSCCSSEEEEEEEEEEESSSCEEE
T ss_pred             CCCCccceEEecCCCCCceEEEEEEEEcCCCCceeEEEecCcc--------ceEEEecCCCCcEEEEEEEEeeccCcccc
Confidence            3478999999999999999999999998878899999998754        89999999999999999999999999999


Q ss_pred             CcceEEecC
Q psy12131        233 SKAYVFATE  241 (245)
Q Consensus       233 s~~~~~~t~  241 (245)
                      | ...|+|.
T Consensus        90 s-~f~FtT~   97 (98)
T 1oww_A           90 T-RFDFTTT   97 (98)
T ss_dssp             E-EEEEEEC
T ss_pred             e-EEEEEec
Confidence            8 7777764

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.39  E-value=1.6e-12  Score=92.88  Aligned_cols=125  Identities=16%  Similarity=0.221  Sum_probs=80.9

Q ss_pred             cceEEEeec----ceEEEeccCCCCCEEEEEEEEcCCC-------C-ceeeEEEEEEe----cCCeEEeecceEEecCCC
Q psy12131          2 KEIELLYNR----ESLDLDRVTLKLAGLYQCIASNNIG-------E-STSKNFIVNVI----YPPEVSVEKQWIHTAPDM   65 (245)
Q Consensus         2 ~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~-------~-~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~   65 (245)
                      +|+.+..+.    .+|+|.+++.+|+|.|.|.+.+..+       . .......|.|.    .+|.+...+....+..|.
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~  145 (226)
T 3mlr_H           66 GQVTMSVDKSISTAYLQWTTLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGG  145 (226)
T ss_dssp             TTBEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSS
T ss_pred             CcEEEEecCCCCEEEEEECCCCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCC
Confidence            466666433    3499999999999999999986421       0 01122356664    355555433344456899


Q ss_pred             eEEEEEEEeec-C-CCeEEEEECCEEecc-----------CCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeE
Q psy12131         66 RAEIICNVYAN-P-PAKVEWFRDGTAITL-----------GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ  132 (245)
Q Consensus        66 ~~~l~C~~~~~-~-~~~~~w~~~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  132 (245)
                      .+.|.|.+.+. | .+.+.|  ++..+..           +..+.+     .+.|.|......| |.|+|.+.+..+...
T Consensus       146 ~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~-----~s~L~i~~~~~~~-~~ytC~v~h~~~~~~  217 (226)
T 3mlr_H          146 TAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSL-----SSVVTVPSSSLGT-QTYICNVNHKPSNTK  217 (226)
T ss_dssp             EEEEEEEEEEEBSSCCEEEE--GGGTCCTTEEECCCEECTTSCEEE-----EEEEEEEGGGTTT-CCCEEEEEEGGGTEE
T ss_pred             CEEEEEEEEEEECCCeEEEE--CCccccCCeEeCCcEECCCCCEEE-----EEEEEECHhHcCC-CeEEEEEEECCCCcC
Confidence            99999999874 4 357999  3322211           112221     2468888888888 999999999876544


Q ss_pred             EE
Q psy12131        133 QF  134 (245)
Q Consensus       133 ~~  134 (245)
                      ..
T Consensus       218 ~~  219 (226)
T 3mlr_H          218 VD  219 (226)
T ss_dssp             EE
T ss_pred             eE
Confidence            43

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.39  E-value=4.7e-10  Score=83.07  Aligned_cols=206  Identities=16%  Similarity=0.146  Sum_probs=126.0

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceE--EecCCCeEEEEEEEeecCCC--eEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWI--HTAPDMRAEIICNVYANPPA--KVEWFR   85 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~--~~~~g~~~~l~C~~~~~~~~--~~~w~~   85 (245)
                      ...+.|.++...-...|+..|.+..|........+.....|   ..+..+  .......+.|.+.....+..  .+.|..
T Consensus        73 ~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~t~~~~---~~P~~l~~~~~~~~sv~l~W~~p~~~~~~Y~v~~~~  149 (290)
T 3r8q_A           73 SSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENV---SPPRRARVTDATETTITISWRTKTETITGFQVDAVP  149 (290)
T ss_dssp             CCEEEECSCCSSCEEEEEEEEEETTEECCCEEEEEECCCCC---CCCEEEEEEEECSSCEEEEEECCSCCCCEEEEEEEE
T ss_pred             ccEEEeCCCCCCCEEEEEEEEEeCCCCCCCcceeEecCCCC---CCCceeEEEEcCCCeEEEEEeCCCCcccEEEEEEEE
Confidence            45688889988888888888888776532222222211112   111111  12234556665554321111  233332


Q ss_pred             CCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE-EEEEEecCCCCccccCccccCCCeeEEEEEe
Q psy12131         86 DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FIQLSGIPNIPVFQKSSRRLGPDGYRLVWQV  164 (245)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~  164 (245)
                      .+.    ..............+.+.++.+.....+...+.|..|.... .+.....|.+|...... .....++.|.|.+
T Consensus       150 ~~~----~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~~~~~t~p~~P~~l~~~-~~~~~sv~l~W~~  224 (290)
T 3r8q_A          150 ANG----QTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFL-ATTPNSLLVSWQP  224 (290)
T ss_dssp             SSS----CCCEEEEECTTCSEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEEEE-EEETTEEEEEEEC
T ss_pred             CCC----CcceEEecCCCccEEEECCCCCCCEEEEEEEEEeCCcccCCEEEEecCCCCCCCccEEE-eeCCCEEEEEEeC
Confidence            221    11222233334557889999998888888899998776443 33444455666544332 3567899999998


Q ss_pred             CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12131        165 DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP  232 (245)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~  232 (245)
                      .. +++.+|.+.|+... ...|.........       ...+.+.+|.+++.|.|+|.|.|..|.|.+
T Consensus       225 p~-~~~~~Y~v~~~~~~-~~~~~~~~~~~~~-------~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p  283 (290)
T 3r8q_A          225 PR-ARITGYIIKYEKPG-SPPREVVPRPRPG-------VTEATITGLEPGTEYTIYVIALKNNQKSEP  283 (290)
T ss_dssp             CS-SCCCEEEEEEECTT-SCCEECSSCCCTT-------CCEEEECSCCTTCEEEEEEEEEETTEECCC
T ss_pred             CC-CcccEEEEEEEeCC-CCcceeEeccCCC-------ccEEEECCCCCCCEEEEEEEEEeCCCcCCc
Confidence            54 37889999998864 4444322111111       278999999999999999999999999876

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.39  E-value=1.8e-12  Score=84.00  Aligned_cols=100  Identities=21%  Similarity=0.337  Sum_probs=73.2

Q ss_pred             EEecCCCCccccCccccCCCeeEEEEEeC--CCCCceEEEEEEEeec-CCCCeEEEeeCCCCCCCcceeeeEEEecCCCC
Q psy12131        137 LSGIPNIPVFQKSSRRLGPDGYRLVWQVD--TYSGIIQYLLKFRERE-ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQL  213 (245)
Q Consensus       137 ~~~~~~~p~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  213 (245)
                      +...|.+|...... .....++.|.|.+.  ++.++.+|.|+|+... ....|..+.......       .. .+.+|.+
T Consensus        13 v~~~P~~P~~~~~~-~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~~w~~~~~~~~~~-------~~-~i~~L~p   83 (127)
T 1uey_A           13 VYDVPNPPFDLELT-DQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQ-------TT-AQLNLSP   83 (127)
T ss_dssp             CCCSCCCCEEEEEE-CCSSSCEEEEEECCCCCSSCEEEEEEEEEBTTTCTTCEEEEEEEESSC-------CE-EEECCCT
T ss_pred             eecCCcCCCCcEEE-EccCCEEEEEEECCCCCCCCceEEEEEEEECCCCCCccEEEeeeCCCc-------eE-EEecCCC
Confidence            33456666654432 35678999999983  5678999999998764 356787654322211       23 4669999


Q ss_pred             CceEEEEEEEEecCCCCCCCcc-eEEecCCCCC
Q psy12131        214 FTQYEASVLAKNRFGWSRPSKA-YVFATEGAET  245 (245)
Q Consensus       214 ~~~y~~~v~a~N~~G~~~~s~~-~~~~t~~~~~  245 (245)
                      ++.|.|||.|.|..|.|.+|.. ..++|.+.+|
T Consensus        84 ~t~Y~frV~A~n~~G~s~~S~~~~~~~T~~~~P  116 (127)
T 1uey_A           84 YVNYSFRVMAVNSIGKSLPSEASEQYLTKASEP  116 (127)
T ss_dssp             TCEECCEEEEEESSCBCCCCSCCCCEECCCSSC
T ss_pred             CCEEEEEEEEEeCCccCCccccccceEcCCCCC
Confidence            9999999999999999999998 5888877643

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.39  E-value=4.3e-12  Score=90.22  Aligned_cols=168  Identities=12%  Similarity=0.096  Sum_probs=94.1

Q ss_pred             ceEEecCCCeEEEEEEEeecC--CCeEEEEECC--EE---e-c---------------cCCcEEEEec--CceeEEEEcc
Q psy12131         57 QWIHTAPDMRAEIICNVYANP--PAKVEWFRDG--TA---I-T---------------LGGRIDMHVS--SEKHSLLVRH  111 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~~--~~---~-~---------------~~~~~~~~~~--~~~~~l~i~~  111 (245)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|++..  ..   + .               ...++.+...  .....|.|.+
T Consensus         8 ~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (220)
T 1pz5_B            8 GGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNN   87 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEcc
Confidence            345788999999999998766  6799999842  11   1 0               0245555432  2355899999


Q ss_pred             CCCCCCeEEEEEEEeCCce-----eEEEEEEEec-CCCCcccc---CccccCCCeeEEEEEeCCC-CCceEEEEEEEeec
Q psy12131        112 IKDTDFGNYMCQASNNLGS-----SQQFIQLSGI-PNIPVFQK---SSRRLGPDGYRLVWQVDTY-SGIIQYLLKFRERE  181 (245)
Q Consensus       112 ~~~~d~g~y~C~~~n~~g~-----~~~~~~~~~~-~~~p~~~~---~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~  181 (245)
                      ++.+|.|.|.|.+.+..+.     ....+.+... +.+|.+..   ......++.+.|.|.+.+. ++...+ .|+++..
T Consensus        88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v-~W~~~~~  166 (220)
T 1pz5_B           88 LRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTV-KWNYGAL  166 (220)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEE-EEGGGTC
T ss_pred             CCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEE-EEecCCc
Confidence            9999999999999997532     1123333322 22343221   1234568899999999654 322122 2333321


Q ss_pred             CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        182 ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                       ......  .+.......-.....+.|......+ ..|.|.|.|..|.
T Consensus       167 -~~~~~~--~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  210 (220)
T 1pz5_B          167 -SSGVRT--VSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASK  210 (220)
T ss_dssp             -CTTEEE--CCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGT
T ss_pred             -ccceEE--cCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCcc
Confidence             100000  0000000000012446666554333 5556669999984

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.39  E-value=3.6e-12  Score=96.84  Aligned_cols=167  Identities=14%  Similarity=0.120  Sum_probs=97.4

Q ss_pred             ceEEecCCCeEEEEEEEeecC--CCeEEEEEC--CEEec-----------------cCCcEEEEec--CceeEEEEccCC
Q psy12131         57 QWIHTAPDMRAEIICNVYANP--PAKVEWFRD--GTAIT-----------------LGGRIDMHVS--SEKHSLLVRHIK  113 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~--~~~~~-----------------~~~~~~~~~~--~~~~~l~i~~~~  113 (245)
                      ..+.+.+|+.+.|.|.+.+.+  .+.+.|+++  +..+.                 ...++.+..+  .....|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (344)
T 1za6_B            8 GAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLR   87 (344)
T ss_dssp             CCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCC
Confidence            346788999999999998863  578999985  32210                 1245555432  345789999999


Q ss_pred             CCCCeEEEEEEEeCCceeEEEEEEEec---CCCCcccc---CccccCCCeeEEEEEeCCCCCc-eEEEEEEEeecCCCCe
Q psy12131        114 DTDFGNYMCQASNNLGSSQQFIQLSGI---PNIPVFQK---SSRRLGPDGYRLVWQVDTYSGI-IQYLLKFREREELTPW  186 (245)
Q Consensus       114 ~~d~g~y~C~~~n~~g~~~~~~~~~~~---~~~p~~~~---~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~  186 (245)
                      .+|.|.|.|.+.|..+.......|.+.   +.+|.+..   ......++.+.|.|.+.+..|. ..+ .|+++.. ...-
T Consensus        88 ~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v-~W~k~g~-~~~~  165 (344)
T 1za6_B           88 SEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV-SWNSGAL-TSGV  165 (344)
T ss_dssp             GGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCE-EETTTTB-CTTE
T ss_pred             cccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEE-EEecCCc-cCce
Confidence            999999999999965443333444443   23333221   1234678899999999654221 122 2333322 1100


Q ss_pred             EEE--eeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        187 RNI--VIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       187 ~~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      ...  .....+   .-.....+.|..+...+ ..|+|.|.|..|.
T Consensus       166 ~~~~~~~~~~~---~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~  206 (344)
T 1za6_B          166 HTFPAVLQSSG---LYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  206 (344)
T ss_dssp             EECCCEECTTS---CEEEEEEEEEETTHHHH-BCEEEEEEEGGGT
T ss_pred             eECCCeECCCC---CEEEEEEEEEcHHHcCC-CcEEEEEEeCCCC
Confidence            000  000110   00112356777765444 6666669999875

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.39  E-value=7.9e-13  Score=93.93  Aligned_cols=118  Identities=16%  Similarity=0.226  Sum_probs=74.9

Q ss_pred             CCeEEeecceEE--ecCCCeEEEEEEEeecC---C-CeEEEEECCEEeccCCcEEEEe-cC----ceeEEEEccCCCCCC
Q psy12131         49 PPEVSVEKQWIH--TAPDMRAEIICNVYANP---P-AKVEWFRDGTAITLGGRIDMHV-SS----EKHSLLVRHIKDTDF  117 (245)
Q Consensus        49 ~p~~~~~~~~~~--~~~g~~~~l~C~~~~~~---~-~~~~w~~~~~~~~~~~~~~~~~-~~----~~~~l~i~~~~~~d~  117 (245)
                      +|.+...+....  +.+|+.+.|.|.+.+.+   . +.+.|++++..+.......... .+    ..+.|.|.++..+|.
T Consensus         9 ~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~   88 (218)
T 2rgs_A            9 GPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSG   88 (218)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTT
T ss_pred             CCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCC
Confidence            455544443333  67899999999999873   3 7999999997665321111100 01    135799999999999


Q ss_pred             eEEEEEEEeCCcee--EEEEEE-EecCCCCccccC---ccccCCCeeEEEEEeCC
Q psy12131        118 GNYMCQASNNLGSS--QQFIQL-SGIPNIPVFQKS---SRRLGPDGYRLVWQVDT  166 (245)
Q Consensus       118 g~y~C~~~n~~g~~--~~~~~~-~~~~~~p~~~~~---~~~~~~~~~~l~~~~~~  166 (245)
                      |.|.|.+.|..+..  ...+.+ .....+|.+...   .....+..+.|.|.+.+
T Consensus        89 g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g  143 (218)
T 2rgs_A           89 KEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVG  143 (218)
T ss_dssp             CCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEE
T ss_pred             CeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEe
Confidence            99999999987643  233221 122234433211   11235789999999976

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.39  E-value=1.1e-11  Score=94.14  Aligned_cols=120  Identities=23%  Similarity=0.277  Sum_probs=80.3

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEE-ecCCC-eEEEEEEEeec-CC--CeEE
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH-TAPDM-RAEIICNVYAN-PP--AKVE   82 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~-~~~g~-~~~l~C~~~~~-~~--~~~~   82 (245)
                      .++.+|+|.+++.+|+|.|+|.+.+..+. ....+.|.|..+|.+...+.... +..|+ .+.|.|.+.+. |.  +.+.
T Consensus       251 ~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~~~~~Vt  329 (401)
T 3f8u_B          251 TGNGTFWLPRVQPFQEGTYLATIHLPYLQ-GQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVE  329 (401)
T ss_dssp             EEEEEEEETTCCGGGCEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSSTTCEEE
T ss_pred             CCcEEEEECcCCHhhCceEEEEEEecccc-eeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcCCCCcEEE
Confidence            45677999999999999999999987665 56788899999999877654433 34676 79999999885 55  6899


Q ss_pred             EE-ECC---EEeccCCcE----EEEecCc----eeEEEEccCCC-CCCeEEEEEEEeCC
Q psy12131         83 WF-RDG---TAITLGGRI----DMHVSSE----KHSLLVRHIKD-TDFGNYMCQASNNL  128 (245)
Q Consensus        83 w~-~~~---~~~~~~~~~----~~~~~~~----~~~l~i~~~~~-~d~g~y~C~~~n~~  128 (245)
                      |. +++   ..+......    .....+.    .+.|.+..... .+.+.|+|.+.+..
T Consensus       330 W~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s  388 (401)
T 3f8u_B          330 WELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS  388 (401)
T ss_dssp             EEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred             EEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence            95 765   111111100    0111111    23455544322 24469999999875

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=5.9e-12  Score=78.79  Aligned_cols=94  Identities=22%  Similarity=0.284  Sum_probs=72.9

Q ss_pred             cCCCCccccCccccCCCeeEEEEEeC--CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceE
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQVD--TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY  217 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y  217 (245)
                      .|.+|..... ......++.|.|.+.  .++++.+|.|+|+... ...|..+....          ..+.|.+|.+++.|
T Consensus         7 ~P~~P~~l~~-~~~~~~si~l~W~~p~~~~g~i~~Y~v~~~~~~-~~~~~~~~~~~----------~~~~i~~L~p~t~Y   74 (106)
T 2ed8_A            7 GPGPVENLQA-VSTSPTSILITWEPPAYANGPVQGYRLFCTEVS-TGKEQNIEVDG----------LSYKLEGLKKFTEY   74 (106)
T ss_dssp             CCCCCEEEEE-ECSSTTEEEEEEECCSSCSSCCCEEEEEEEETT-TCCEEEEEECS----------SCEEEESCCTTCEE
T ss_pred             CCcCCceeEE-EecCCCEEEEEECCCCCCCCCeeEEEEEEEECC-CCceEEEeCCc----------cEEEECCCCCCCEE
Confidence            3455544433 235677999999984  3468999999998865 55666554431          67899999999999


Q ss_pred             EEEEEEEecCCCCCCCcceEEecCCCCC
Q psy12131        218 EASVLAKNRFGWSRPSKAYVFATEGAET  245 (245)
Q Consensus       218 ~~~v~a~N~~G~~~~s~~~~~~t~~~~~  245 (245)
                      .|+|.|.|..|.|.+|..+.++|....|
T Consensus        75 ~~~V~A~n~~G~g~~S~~~~~~T~~~~P  102 (106)
T 2ed8_A           75 SLRFLAYNRYGPGVSTDDITVVTLSDSG  102 (106)
T ss_dssp             EEEEEEECSSCEEEECCCEEEECCCCCC
T ss_pred             EEEEEEEeCCccCCCcCCEEEEcCCCCC
Confidence            9999999999999999999999987643

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.38  E-value=2.2e-11  Score=87.95  Aligned_cols=117  Identities=12%  Similarity=0.092  Sum_probs=74.2

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEE--------------CCEEeccC----CcEEEEec-CceeEEEEc
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--------------DGTAITLG----GRIDMHVS-SEKHSLLVR  110 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--------------~~~~~~~~----~~~~~~~~-~~~~~l~i~  110 (245)
                      +.+...+..+.+.+|+.+.|.| ..+.+.+.+.|++              ++......    .++.+... .....|.|.
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~   81 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ   81 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred             cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence            3445566677889999999999 6677888999998              22211111    45555432 345689999


Q ss_pred             cCCCCCCeEEEEEEEeCC----ceeEEEEEEEecC-----CCCccccC----ccccCCCeeEEEEEeCCC
Q psy12131        111 HIKDTDFGNYMCQASNNL----GSSQQFIQLSGIP-----NIPVFQKS----SRRLGPDGYRLVWQVDTY  167 (245)
Q Consensus       111 ~~~~~d~g~y~C~~~n~~----g~~~~~~~~~~~~-----~~p~~~~~----~~~~~~~~~~l~~~~~~~  167 (245)
                      +++.+|.|.|.|.+.+..    ........+.+..     .+|.....    .....+..+.|.|.+.+.
T Consensus        82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~  151 (245)
T 4ei6_B           82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF  151 (245)
T ss_dssp             SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEE
T ss_pred             CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeE
Confidence            999999999999999532    2222222333321     23332211    112347899999999653

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.37  E-value=1.5e-09  Score=79.99  Aligned_cols=208  Identities=13%  Similarity=0.036  Sum_probs=126.5

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEecCCCeEEEEEEEeecCCC--eEEEEEC
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KVEWFRD   86 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~w~~~   86 (245)
                      ....+.|.++.....-.++..+.+..|...  ...+.+..+|...... .........+.|.+.....+..  .+.|...
T Consensus        66 ~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~--~~~~~~~t~p~~P~~l-~~~~~~~~sv~l~W~~p~~~i~~Y~v~~~~~  142 (283)
T 1tdq_A           66 PLSQYSVQALRPGSRYEVSISAVRGTNESD--ASSTQFTTEIDAPKNL-RVGSRTATSLDLEWDNSEAEAQEYKVVYSTL  142 (283)
T ss_dssp             TCSEEEECSCCTTCEEEEEEEEEETTEECC--CEEEEEECCCCCCEEE-EEEEECSSCEEEEEECCSSCCSEEEEEEEET
T ss_pred             CCCEEEecCCCCCCEEEEEEEEECCCCCCC--CeeEEEECCCCCCCce-EEEecCCCeEEEEecCCCCCccEEEEEEEeC
Confidence            345588888888887788888888665432  2333333332211111 1112234566666654321111  3444432


Q ss_pred             CEEeccCCcEEEEecCc---eeEEEEccCCCCCCeEEEEEEEeCCceeEE-EEEEEecCCCCccccCccccCCCeeEEEE
Q psy12131         87 GTAITLGGRIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FIQLSGIPNIPVFQKSSRRLGPDGYRLVW  162 (245)
Q Consensus        87 ~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~l~~  162 (245)
                      +.    .....+.....   ...+.+.++.+.....++..+.|..|.... .+.....+.+|..... ......++.|.|
T Consensus       143 ~~----~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~~~~~t~~~~P~~l~~-~~~~~~sv~l~W  217 (283)
T 1tdq_A          143 AG----EQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMV-TASSETSISLIW  217 (283)
T ss_dssp             TC----CCCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEEE-EEECSSCEEEEE
T ss_pred             CC----CcceEEECCCCCcccceEEEecCCCCCEEEEEEEEEeCCCCCcceEEEecCCCCCCCccEE-eEecCCEEEEEE
Confidence            21    11112222222   567889999998888899999998775433 2333334444443332 235677899999


Q ss_pred             EeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcc
Q psy12131        163 QVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKA  235 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~  235 (245)
                      .+. ++++.+|.+.|+...  +.+.........        ..+.+.+|.+++.|.|+|.|.|..|.|.++..
T Consensus       218 ~~p-~~~i~~Y~v~~~~~~--~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~~  279 (283)
T 1tdq_A          218 TKA-SGPIDHYRITFTPSS--GISSEVTVPRDR--------TSYTLTDLEPGAEYIISITAERGRQQSLESTV  279 (283)
T ss_dssp             ECC-CSCCSEEEEEEECSS--SCCEEEEEESSC--------SEEEECCCCTTCCEEEEEEEEETTEECCCEEE
T ss_pred             eCC-CCcccEEEEEEEcCC--CCeeEEEeCCCc--------cEEEECCCCCCCEEEEEEEEEcCCCCCcceee
Confidence            985 357889999998864  334344333332        68999999999999999999999999887644

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=99.37  E-value=6.5e-11  Score=83.54  Aligned_cols=132  Identities=20%  Similarity=0.230  Sum_probs=93.9

Q ss_pred             eeEEEEccCCCCCCeEEEEEEEeCCceeEE--EEEEEe---cCC-CCccccCcccc-CCCeeEEEEEeC--CCCCceEEE
Q psy12131        104 KHSLLVRHIKDTDFGNYMCQASNNLGSSQQ--FIQLSG---IPN-IPVFQKSSRRL-GPDGYRLVWQVD--TYSGIIQYL  174 (245)
Q Consensus       104 ~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~--~~~~~~---~~~-~p~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~  174 (245)
                      ...+.|.++.+...+.++..+.|..|....  .+.+..   .|. +|......... ...++.|.|.+.  .++++.+|.
T Consensus        63 ~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~S~~~~~~t~~~~P~~~P~~~~~~~~~~s~~sv~l~W~~p~~~~g~i~~Y~  142 (211)
T 3p4l_A           63 TLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYI  142 (211)
T ss_dssp             SSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECCCCCCCSCCEEEEEEEETTEEEEEEEEEECCTTCCSCCCEEE
T ss_pred             ceEEEecCcCCCCEEEEEEEEEcCCCCCccceeEeeecccCCCCCCCcceEEEecCCCCCEEEEEECCCCCCCCCEEEEE
Confidence            447889999998888899999998876542  233332   232 44333322211 356999999983  346899999


Q ss_pred             EEEEeecC--CCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCCC
Q psy12131        175 LKFREREE--LTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA  243 (245)
Q Consensus       175 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~~  243 (245)
                      |.|+....  ...|.........        ..+.+.+|.+++.|.|+|.|.|..|.|.+|..+.+.+...
T Consensus       143 v~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~~~~~  205 (211)
T 3p4l_A          143 IYYSTDVNAEIHDWVIEPVVGNR--------LTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKA  205 (211)
T ss_dssp             EEEESCTTSCGGGSEEEEEESSC--------SEEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEECC--
T ss_pred             EEEEECCCCCCCceEEEEecCCe--------eEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEccCccc
Confidence            99997651  2234444333332        7899999999999999999999999999999999988653

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=1.3e-11  Score=77.42  Aligned_cols=76  Identities=13%  Similarity=0.216  Sum_probs=65.0

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCC----------cEEEEecCceeEEEEccCCCCCCe
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG----------RIDMHVSSEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~----------~~~~~~~~~~~~l~i~~~~~~d~g  118 (245)
                      +|.+...+....+.+|+.+.|.|.+.+  .|.+.|++|+..+....          ++.+...+....|.|.++..+|.|
T Consensus         8 ~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G   85 (112)
T 2e6q_A            8 TARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSG   85 (112)
T ss_dssp             CCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCS
T ss_pred             CcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCc
Confidence            466777778888999999999999986  77899999999998876          778777777789999999999999


Q ss_pred             EEEEEEEe
Q psy12131        119 NYMCQASN  126 (245)
Q Consensus       119 ~y~C~~~n  126 (245)
                      .|.|..-+
T Consensus        86 ~Y~~~~~~   93 (112)
T 2e6q_A           86 ALVGFSCP   93 (112)
T ss_dssp             EEEEEEET
T ss_pred             cEEEEEEC
Confidence            99775444

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=3.8e-13  Score=84.97  Aligned_cols=91  Identities=12%  Similarity=0.150  Sum_probs=68.3

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeec---CCCeEEEEECCE-Eecc--CCcEEEEe--cC----ceeEEEEccCCCCCC
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYAN---PPAKVEWFRDGT-AITL--GGRIDMHV--SS----EKHSLLVRHIKDTDF  117 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~---~~~~~~w~~~~~-~~~~--~~~~~~~~--~~----~~~~l~i~~~~~~d~  117 (245)
                      +.+...|..+.+.+|+.+.|.|.+.+.   |.|.|.|+++.. .+..  ..++.+..  ..    ....|.|.++...|.
T Consensus        13 ~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   92 (118)
T 2edn_A           13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDR   92 (118)
T ss_dssp             SSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTC
T ss_pred             ceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhC
Confidence            344555677788999999999999875   688999999742 1111  23344321  11    247899999999999


Q ss_pred             eEEEEEEEeCCceeEEEEEEEec
Q psy12131        118 GNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus       118 g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      |.|+|.+.|..|.....+.|.+.
T Consensus        93 G~Y~Cevsn~~g~~s~~~~L~V~  115 (118)
T 2edn_A           93 GYYRLEVKAKDTCDSCGFNIDVE  115 (118)
T ss_dssp             SCEEEEEECSSCEEEEEECCEEE
T ss_pred             EEEEEEEEEcCCcEEEEEEEEEE
Confidence            99999999999988888777664

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.37  E-value=9e-13  Score=83.12  Aligned_cols=83  Identities=23%  Similarity=0.261  Sum_probs=65.8

Q ss_pred             ccCCCeeEEEEEe---CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCC
Q psy12131        152 RLGPDGYRLVWQV---DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG  228 (245)
Q Consensus       152 ~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G  228 (245)
                      ....+++.|.|.+   +++.++.+|.|+|+... ...|..+......       ...+++.+|.+++.|.|||.|.|..|
T Consensus        21 ~v~~~sv~L~W~~P~~~gg~~i~~Y~Ve~~~~~-~~~w~~~~~~~~~-------~~~~~v~~L~p~t~Y~frV~A~N~~G   92 (112)
T 1bpv_A           21 NITRHTVTLKWAKPEYTGGFKITSYIVEKRDLP-NGRWLKANFSNIL-------ENEFTVSGLTEDAAYEFRVIAKNAAG   92 (112)
T ss_dssp             EEETTEEEEECCCCSCCTTCCCSCCEEEEEETT-SCCCEECCCSCCC-------SSEEEECSCCSSCCEEEEEEEECTTS
T ss_pred             EeeCCEEEEEECCCCcCCCCcccEEEEEEEECC-CCceEEeecccCc-------cCEEEECCCCCCCEEEEEEEEEECCC
Confidence            3567899999995   34568999999999865 5678765432211       26799999999999999999999999


Q ss_pred             C-CCCCcceEEecCC
Q psy12131        229 W-SRPSKAYVFATEG  242 (245)
Q Consensus       229 ~-~~~s~~~~~~t~~  242 (245)
                      . |.+|..+.+.+..
T Consensus        93 ~~s~~S~~~~~~t~~  107 (112)
T 1bpv_A           93 AISPPSEPSDAITCR  107 (112)
T ss_dssp             CEEEEEEEEEEECSC
T ss_pred             CCCCCCCCCCCEEeC
Confidence            7 9999887766654

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=99.37  E-value=1.1e-11  Score=87.41  Aligned_cols=128  Identities=16%  Similarity=0.200  Sum_probs=93.1

Q ss_pred             eEEEEccCCCCCCeEEEEEEEeCCceeEE--EEEEEe----cCCCCccccCccccCCCeeEEEEEeC--CCCCceEEEEE
Q psy12131        105 HSLLVRHIKDTDFGNYMCQASNNLGSSQQ--FIQLSG----IPNIPVFQKSSRRLGPDGYRLVWQVD--TYSGIIQYLLK  176 (245)
Q Consensus       105 ~~l~i~~~~~~d~g~y~C~~~n~~g~~~~--~~~~~~----~~~~p~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~  176 (245)
                      ..+.+.++.+...+.|++.+.|..|....  .+.+..    .|.+|.... .......++.|.|.++  .++++.+|.|+
T Consensus        68 ~~~~i~~L~p~t~Y~~~V~A~n~~G~~~~s~~~~~~T~~~~~P~~P~~~~-~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~  146 (209)
T 2vkw_A           68 GIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEG-QMGEDGNSIKVNLIKQDDGGSPIRHYLVR  146 (209)
T ss_dssp             SEEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEECCCSCSCCCCEEEE-EECTTSSCEEEEEECCCCTTSCCCEEEEE
T ss_pred             ceEEeCCCCCCCeEEEEEEEEcCCcccCCcccccccccCCCCCCCCcccc-cccccCCeEEEEEECcccCCCCCceEEEE
Confidence            46889999999999999999998876443  222222    244444322 2235678999999985  56789999999


Q ss_pred             EEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCC
Q psy12131        177 FREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEG  242 (245)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~  242 (245)
                      |+. . ...|.........       ...+.+.+|.+++.|.|+|.|.|..|.|.+|..+.+.+..
T Consensus       147 ~~~-~-~~~~~~~~~~~~~-------~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~~~~~~~~  203 (209)
T 2vkw_A          147 YRA-L-SSEWKPEIRLPSG-------SDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAA  203 (209)
T ss_dssp             EEE-T-TSCCCCCEEECTT-------CCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECC--
T ss_pred             EEC-C-CCCCceeeecCCC-------ccEEEecCCCCCCEEEEEEEEEeCCccCCcchhhhhhhhh
Confidence            998 3 5556533222222       1679999999999999999999999999999888776643

>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.37  E-value=9.8e-12  Score=78.83  Aligned_cols=85  Identities=18%  Similarity=0.205  Sum_probs=67.0

Q ss_pred             ccCCCeeEEEEEeC----CCCCceEEEEEEEeecCC--CCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEe
Q psy12131        152 RLGPDGYRLVWQVD----TYSGIIQYLLKFREREEL--TPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKN  225 (245)
Q Consensus       152 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N  225 (245)
                      .....++.|+|.+.    .++++.+|.|+|+.....  ..|.........        ..+.|.+|.+++.|.|+|.|.|
T Consensus        19 ~~~~~si~l~W~~p~~~~~~g~i~gY~v~y~~~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~V~A~n   90 (114)
T 1x4y_A           19 AVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR--------YWHSISHLQPETSYDIKMQCFN   90 (114)
T ss_dssp             CSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTC--------CEEEECSCCTTCEEEEEEEEEC
T ss_pred             ecCCCEEEEEEeCCCchhcCCccceEEEEEEECCCCCCcceeeEecCCcE--------eEEEcCCCCCCCEEEEEEEEEc
Confidence            35678999999984    457899999999876522  234322222222        6799999999999999999999


Q ss_pred             cCCCCCCCcceEEecCCCC
Q psy12131        226 RFGWSRPSKAYVFATEGAE  244 (245)
Q Consensus       226 ~~G~~~~s~~~~~~t~~~~  244 (245)
                      ..|.|.+|..+.++|.+.+
T Consensus        91 ~~G~g~~S~~v~~~T~~~~  109 (114)
T 1x4y_A           91 EGGESEFSNVMICETKARS  109 (114)
T ss_dssp             TTCCCCCCCCEEEECCCCC
T ss_pred             CCccCCCcCCEEEEeCCCC
Confidence            9999999999999998864

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.36  E-value=1.2e-10  Score=82.96  Aligned_cols=170  Identities=11%  Similarity=0.070  Sum_probs=94.4

Q ss_pred             eEEecCCCeEEEEEEEeecC--CCeEEEEECC--E---Eec--------------cCCcEEEEec--CceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANP--PAKVEWFRDG--T---AIT--------------LGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~~--~---~~~--------------~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      .+.+.+|+.+.|.|.+.+.+  .+.+.|++..  .   .+.              ...++.+...  .....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (223)
T 1dee_B            9 GGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA   88 (223)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCH
Confidence            45688999999999998765  4789999832  1   110              1235555432  2356899999999


Q ss_pred             CCCeEEEEEEEeCCc------eeEEEEEEEec---CCCCcccc---CccccCCCeeEEEEEeCCCCCceEEEEEEE-eec
Q psy12131        115 TDFGNYMCQASNNLG------SSQQFIQLSGI---PNIPVFQK---SSRRLGPDGYRLVWQVDTYSGIIQYLLKFR-ERE  181 (245)
Q Consensus       115 ~d~g~y~C~~~n~~g------~~~~~~~~~~~---~~~p~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~  181 (245)
                      +|.|.|.|.+.+..|      .....+.|.+.   +.+|.+..   ......+..+.|.|.+.+..|...-..|++ +..
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~  168 (223)
T 1dee_B           89 EDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNS  168 (223)
T ss_dssp             GGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSC
T ss_pred             HHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCC
Confidence            999999999998753      11122344443   23343321   122356789999999965422211223555 322


Q ss_pred             CCCCeEEEeeCCCCCCCccee-eeEEEecCCCC--CceEEEEEEEEecCCCC
Q psy12131        182 ELTPWRNIVIPSDGSLAGPIY-TQSYNITGLQL--FTQYEASVLAKNRFGWS  230 (245)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~--~~~y~~~v~a~N~~G~~  230 (245)
                      .-.. .. ....... ..... ...+.|.....  .+...|.|.|.|..|..
T Consensus       169 ~l~~-~~-~~~~~~~-~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~  217 (223)
T 1dee_B          169 DISS-TR-GFPSVLR-GGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNK  217 (223)
T ss_dssp             BCSC-EE-ECCCEEE-TTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCE
T ss_pred             ccce-eE-ECCcccc-CCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCC
Confidence            1111 11 1110000 01111 23456655543  33445555599998754

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.36  E-value=1e-11  Score=88.61  Aligned_cols=110  Identities=15%  Similarity=0.148  Sum_probs=72.5

Q ss_pred             eEEecCCCeEEEEEEEeecC--CCeEEEEECC--EE---e--------------ccCCcEEEEec--CceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANP--PAKVEWFRDG--TA---I--------------TLGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~~--~~---~--------------~~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      ...+.+|+.+.|.|.+.+.+  .+.+.|++..  ..   +              ....++.+...  .....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (225)
T 1op3_H            9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV   88 (225)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCCh
Confidence            45688999999999998876  6789999742  21   1              01245555432  3457899999999


Q ss_pred             CCCeEEEEEEEeCCc-----e---eEEEEEEEecC---CCCcccc---CccccCCCeeEEEEEeCCC
Q psy12131        115 TDFGNYMCQASNNLG-----S---SQQFIQLSGIP---NIPVFQK---SSRRLGPDGYRLVWQVDTY  167 (245)
Q Consensus       115 ~d~g~y~C~~~n~~g-----~---~~~~~~~~~~~---~~p~~~~---~~~~~~~~~~~l~~~~~~~  167 (245)
                      +|.|.|.|.+.+..|     .   ......|.+..   .+|....   ......++.+.|.|.+.+.
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~  155 (225)
T 1op3_H           89 EDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDY  155 (225)
T ss_dssp             GGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEE
T ss_pred             hhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeE
Confidence            999999999999764     1   11223344332   2333221   1123568899999999654

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.36  E-value=5.2e-12  Score=79.71  Aligned_cols=94  Identities=15%  Similarity=0.174  Sum_probs=68.0

Q ss_pred             CCCCccccCccccCCCeeEEEEEeC---CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceE
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQVD---TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY  217 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y  217 (245)
                      |.+|...... .....++.|.|.+.   +..++.+|.|+|+... ...|..+.....       ....+.+.+|.+++.|
T Consensus         9 P~~P~~l~~~-~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~-~~~w~~~~~~~~-------~~~~~~v~~L~p~t~Y   79 (111)
T 1x5y_A            9 TSAPQHLTVE-DVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEG-SEEWVPANKEPV-------ERCGFTVKDLPTGARI   79 (111)
T ss_dssp             CCCCEEEEEE-EECSSEEEEEEECCSCCCSSCCCEEEEEEEETT-CCCCEESSSSCB-------SSSEEEEECCCTTCCE
T ss_pred             CcCCCCCEEE-eccCCEEEEEECCCCcCCCCcccEEEEEEEECC-CCceEEccccCC-------cccEEEECCCCCCCEE
Confidence            4444433322 35678999999983   3346999999998865 567876543211       1278999999999999


Q ss_pred             EEEEEEEecCCCCCCCcce-EEecCCC
Q psy12131        218 EASVLAKNRFGWSRPSKAY-VFATEGA  243 (245)
Q Consensus       218 ~~~v~a~N~~G~~~~s~~~-~~~t~~~  243 (245)
                      .|||.|.|..|.|.+|... .+++.+.
T Consensus        80 ~frV~A~n~~G~s~~S~~~~~v~~~~~  106 (111)
T 1x5y_A           80 LFRVVGVNIAGRSEPATLLQPVTIRES  106 (111)
T ss_dssp             EEEEEEEETTEECCCCCCSSCBCCCCC
T ss_pred             EEEEEEEcCCcCCCCccCCCCEEecCC
Confidence            9999999999999998865 4555443

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.36  E-value=1.9e-11  Score=84.10  Aligned_cols=149  Identities=13%  Similarity=0.132  Sum_probs=88.5

Q ss_pred             ceEEecCCCeEEEEEEEee-cCCCeEEEEEC-CEEec------------cC--CcEEEEecCceeEEEEccCCCCCCeEE
Q psy12131         57 QWIHTAPDMRAEIICNVYA-NPPAKVEWFRD-GTAIT------------LG--GRIDMHVSSEKHSLLVRHIKDTDFGNY  120 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~-~~~~~~~w~~~-~~~~~------------~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y  120 (245)
                      ..+.+.+|+++.|.|...+ .+.+.+.|++. ...+.            ..  .++.+  ......|.|.+++.+|.|.|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l--~~~~~sL~I~~v~~~D~G~Y   84 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL--DKTNGALRIYNVSKEDRGDY   84 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEE--CTTTCCEEECSCCGGGCEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEE--eCCCccEEEcCCCHHHCeEE
Confidence            3466789999999999854 34679999984 32221            11  23333  12445799999999999999


Q ss_pred             EEEEEeCCceeEEEEEEEecC--CCCccccCccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCC
Q psy12131        121 MCQASNNLGSSQQFIQLSGIP--NIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLA  198 (245)
Q Consensus       121 ~C~~~n~~g~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (245)
                      .|.+.+.. .....+.|.+..  ..|.+..     .+..+.|.|.+..+ |...+. |+++..   ...  ..  ..   
T Consensus        85 ~C~v~~~~-~~~~~~~L~V~~~~~~P~i~~-----~~~~v~L~C~~~~g-p~p~i~-W~~~~~---~l~--~~--~~---  146 (180)
T 2dru_A           85 YMRMLHET-EDQWKITMEVYEMVSKPMIYW-----ECSNATLTCEVLEG-TDVELK-LYQGKE---HLR--SL--RQ---  146 (180)
T ss_dssp             EEEEESSS-EEEEEEEEEEECCCCCCEEEE-----EGGGTEEEEECSSC-TTCEEE-EEETTE---EEE--EE--SS---
T ss_pred             EEEEEcCC-eEEEEEEEEEECCCCCCEEEe-----cCCCEEEEEEeCCC-CCCEEE-EEECCe---ECc--CC--CC---
Confidence            99998876 455555665543  2333322     23569999999333 333333 454422   111  11  11   


Q ss_pred             cceeeeEEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12131        199 GPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP  232 (245)
Q Consensus       199 ~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~  232 (245)
                           ..+.+....+.  ..|+|.|.|.+|....
T Consensus       147 -----~~l~~~~~~d~--g~Y~C~a~N~~~~~~~  173 (180)
T 2dru_A          147 -----KTMSYQWTNLR--APFKCKAVNRVSQESE  173 (180)
T ss_dssp             -----SEEEEECSCCS--SCEEEEEEETTEEEEE
T ss_pred             -----CEEEEEEhhcC--ccEEEEEecCcCcccc
Confidence                 33444333344  4455559999986543

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=8.6e-12  Score=78.57  Aligned_cols=94  Identities=17%  Similarity=0.189  Sum_probs=68.7

Q ss_pred             CCCCccccCccccCCCeeEEEEEeC---CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceE
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQVD---TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY  217 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y  217 (245)
                      |.+|...... .....++.|.|.+.   +..++.+|.|+|+... ...|..+......       ...+.+.+|.+++.|
T Consensus         8 P~~P~~l~~~-~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~-~~~w~~~~~~~~~-------~~~~~v~~L~p~t~Y   78 (110)
T 2yuw_A            8 TSPPTLLTVD-SVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEG-TEDWIVANKDLID-------KTKFTITGLPTDAKI   78 (110)
T ss_dssp             SCCCEEEEEE-EECSSCEEEEEECCSSCCSSCEEEEEEEEEETT-CSSEEECCSSCCC-------SSEEEECSCCTTCEE
T ss_pred             CCCCCccEEE-eccCCeEEEEECCCCCCCCCCccEEEEEEEECC-CccceEeccccCc-------cCEEEECCCCCCCEE
Confidence            4455433322 35677999999983   3357899999999865 5678765432211       278999999999999


Q ss_pred             EEEEEEEecCCCCCCCcce-EEecCCC
Q psy12131        218 EASVLAKNRFGWSRPSKAY-VFATEGA  243 (245)
Q Consensus       218 ~~~v~a~N~~G~~~~s~~~-~~~t~~~  243 (245)
                      .|||.|.|..|.|.+|... .+++.+.
T Consensus        79 ~frV~A~n~~G~s~~S~~~~~v~~~~~  105 (110)
T 2yuw_A           79 FVRVKAVNAAGASEPKYYSQPILVKES  105 (110)
T ss_dssp             EEEEEEEETTEECCCEECSSCEECCCC
T ss_pred             EEEEEEEcCCcCCCCcCCCCCEEecCC
Confidence            9999999999999998765 3444443

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.36  E-value=1.2e-11  Score=79.18  Aligned_cols=95  Identities=18%  Similarity=0.225  Sum_probs=71.6

Q ss_pred             cCCCCccccCccccCCCeeEEEEEeCC---CCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCce
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQVDT---YSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ  216 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  216 (245)
                      .|.+|..... ......++.|.|.+..   ++++.+|.|+|+... ...|.........       ...+.|.+|.+++.
T Consensus        17 ~P~~P~~l~~-~~~~~~sv~l~W~~p~~~~~g~i~~Y~v~~~~~~-~~~~~~~~~~~~~-------~~~~~i~~L~p~t~   87 (120)
T 1x5f_A           17 LPSAPRDVVA-SLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEG-IARERVENTSHPG-------EMQVTIQNLMPATV   87 (120)
T ss_dssp             CCCCCEEEEE-EEECSSCEEEEEECCSSCSSCCSSEEEEEEEETT-CCCCEEEECSSTT-------CSEEEECSCCTTCE
T ss_pred             CCCCCCCcEE-EecCCCEEEEEECCCCCCCCCcEEEEEEEEEECC-CCCceEEEeccCC-------ccEEEeCCCCCCCE
Confidence            3444544333 2356778999999843   468899999998864 3445544332222       27899999999999


Q ss_pred             EEEEEEEEecCCCCCCCcceEEecCCC
Q psy12131        217 YEASVLAKNRFGWSRPSKAYVFATEGA  243 (245)
Q Consensus       217 y~~~v~a~N~~G~~~~s~~~~~~t~~~  243 (245)
                      |.|+|.|.|..|.|.+|..+.++|.++
T Consensus        88 Y~~~V~A~n~~G~g~~S~~~~~~T~~~  114 (120)
T 1x5f_A           88 YIFRVMAQNKHGSGESSAPLRVETQPE  114 (120)
T ss_dssp             EEEEEEEECSSCEEEECCCEEEECCCC
T ss_pred             EEEEEEEECCCccCCCCCCEEEEeCCC
Confidence            999999999999999999999999764

>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A

Probab=99.36  E-value=1.1e-09  Score=83.74  Aligned_cols=216  Identities=12%  Similarity=0.020  Sum_probs=131.7

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceEEe--cCCCeEEEEEEEeecC-CC--eEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT--APDMRAEIICNVYANP-PA--KVEWF   84 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~--~~g~~~~l~C~~~~~~-~~--~~~w~   84 (245)
                      ...+.|.++.......|+..|.+..|...  .....+...|.   .+..+.+  .....+.|.+...... ..  .+.|.
T Consensus        57 ~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~--~~~~~~~~~~~---~p~~l~~~~~~~~si~l~W~~p~~~~~~~Y~v~~~  131 (368)
T 1fnf_A           57 QSSCTFDNLSPGLEYNVSVYTVKDDKESV--PISDTIIPAVP---PPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYS  131 (368)
T ss_dssp             CCEEECCCCCTTSCEEEEEEEEETTEECC--CEEEEECCCCC---CCEEEEEESCCSSCEEEEEECCTTCCCSEEEEEEE
T ss_pred             cCEEEECCCCCCCEEEEEEEEEcCCCccC--ceeeeecCCCc---CCceeEEEEcCCCeEEEEeeCCCCCCCcEEEEEEE
Confidence            34578889998888888999988876532  22223322111   1222222  2355666666643111 11  34444


Q ss_pred             ECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEE-EEEEecCCCCccccCccccCCCeeEEEEE
Q psy12131         85 RDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF-IQLSGIPNIPVFQKSSRRLGPDGYRLVWQ  163 (245)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~l~~~  163 (245)
                      ..+..   .....+........+.+.++.+.....|+..+.|..|..... ......+.+|..... .......+.|.|.
T Consensus       132 ~~~~~---~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~~~~~~~~P~~l~~-~~~~~~sv~l~W~  207 (368)
T 1fnf_A          132 PVKNE---EDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDF-SDITANSFTVHWI  207 (368)
T ss_dssp             ETTCT---TCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEEE-ESCCSSEEEEEEE
T ss_pred             ECCCC---CccEEEEcCCCcceEEecCCCCCCEEEEEEEEEeCCCCCCCeEeeecCCCCCCCccEE-EEccCCEEEEEEe
Confidence            32110   112222233345678899999888888889999987754332 222233444443322 2346789999999


Q ss_pred             eCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCCC
Q psy12131        164 VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA  243 (245)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~~  243 (245)
                      +.. +++.+|.+.++.......+.........        ..+.+.+|.+++.|.|+|.|.|..|.+..+. ....+.+.
T Consensus       208 ~p~-~~i~~Y~v~~~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~-~~~~t~p~  277 (368)
T 1fnf_A          208 APR-ATITGYRIRHHPEHFSGRPREDRVPHSR--------NSITLTNLTPGTEYVVSIVALNGREESPLLI-GQQSTVSD  277 (368)
T ss_dssp             CCS-SCCSEEEEEEECSCCSSCCEEEEEETTC--------CEEEEESCCTTCEEEEEEEEEETTEECCCEE-EEEECCCC
T ss_pred             CCC-CCcCEEEEEEecCCCCCCccEEEeCCCc--------CEEEECCCCCCCEEEEEEEEEeCCccCCccc-ccccCCCC
Confidence            854 5788999999886533445444443332        6789999999999999999999999987764 34455554


Q ss_pred             C
Q psy12131        244 E  244 (245)
Q Consensus       244 ~  244 (245)
                      +
T Consensus       278 ~  278 (368)
T 1fnf_A          278 V  278 (368)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.36  E-value=5.8e-12  Score=88.71  Aligned_cols=107  Identities=15%  Similarity=0.288  Sum_probs=69.2

Q ss_pred             ecCCCeEEEEEEEeecC---C-CeEEEEECCEEeccCCc-EE-EEecC---ceeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131         61 TAPDMRAEIICNVYANP---P-AKVEWFRDGTAITLGGR-ID-MHVSS---EKHSLLVRHIKDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~~~---~-~~~~w~~~~~~~~~~~~-~~-~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g~~  131 (245)
                      +..|+.+.|.|.+.+.+   . ..+.|++++..+..... .. ....+   ..+.|.|.++..+|.|.|.|.+.|..+..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            67999999999999884   2 48999999876542210 00 00000   13479999999999999999999987753


Q ss_pred             --EEEEEEE-ecCCCCccccC---ccccCCCeeEEEEEeCCC
Q psy12131        132 --QQFIQLS-GIPNIPVFQKS---SRRLGPDGYRLVWQVDTY  167 (245)
Q Consensus       132 --~~~~~~~-~~~~~p~~~~~---~~~~~~~~~~l~~~~~~~  167 (245)
                        ...+.+. ....+|.+...   .....+..+.|.|.+.+.
T Consensus        95 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~  136 (207)
T 2vol_A           95 PIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDF  136 (207)
T ss_dssp             CEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEE
T ss_pred             ceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeE
Confidence              2333221 12234433211   112357899999999653

>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.3e-11  Score=78.96  Aligned_cols=86  Identities=20%  Similarity=0.161  Sum_probs=68.0

Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeecC-CCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFREREE-LTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      .....++.|.|.+...+++.+|.|.|+.... ...|..+......        ..+.|.+|.+++.|.|+|.|.|..|.|
T Consensus        29 ~~~~~sv~l~W~~p~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~V~A~n~~G~g  100 (119)
T 2ee2_A           29 VLSSSEISVHWEHVLEKIVESYQIRYWAAHDKEEAANRVQVTSQE--------YSARLENLLPDTQYFIEVGACNSAGCG  100 (119)
T ss_dssp             EEETTEEEEECCCCSCTTCCEEEEEEEESSSCGGGCEEEEEETTC--------SEEEECSCCTTCEEEEEEEEECSSSCC
T ss_pred             EccCCEEEEEecCCCCCccceEEEEEEECCCcccCcEEEEcCCCE--------eEEEECCCCCCCEEEEEEEEEcCCccC
Confidence            4567899999998443789999999987652 2234444433322        689999999999999999999999999


Q ss_pred             CCCcceEEecCCCCC
Q psy12131        231 RPSKAYVFATEGAET  245 (245)
Q Consensus       231 ~~s~~~~~~t~~~~~  245 (245)
                      .+|..+.++|...+|
T Consensus       101 ~~S~~~~~~T~~~~p  115 (119)
T 2ee2_A          101 PPSDMIEAFTKKASG  115 (119)
T ss_dssp             CCCCCEEEECCCCCC
T ss_pred             CCCCCEEEECCCCCC
Confidence            999999999987654

>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP: b.1.2.1

Probab=99.35  E-value=1.1e-11  Score=78.60  Aligned_cols=98  Identities=16%  Similarity=0.177  Sum_probs=63.1

Q ss_pred             cCCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCC----CCcceeeeEEEecCCCC
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGS----LAGPIYTQSYNITGLQL  213 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~l~~  213 (245)
                      .|.+|.    ......+++.|.|.+  +.+.++++|.|+|+.......|..+.......    ..-......+.+.+|.+
T Consensus         5 pP~~P~----v~~~~~~sv~L~W~~P~~~G~pI~~Y~Ve~r~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~v~~L~p   80 (115)
T 2ic2_A            5 PPTPPN----VTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKP   80 (115)
T ss_dssp             CCCCCE----EEECC---EEEEEEEECCSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCS
T ss_pred             CCCcCE----eEEEeCCEEEEEEcCCCCCCCCCceEEEEEEECCCCCCceECcccccccccccccccCceeEEEeCCCCC
Confidence            455665    224677899999998  34478999999999863256787664321000    00112235789999999


Q ss_pred             CceEEEEEEEEecCCCC---CCCcceEEecC
Q psy12131        214 FTQYEASVLAKNRFGWS---RPSKAYVFATE  241 (245)
Q Consensus       214 ~~~y~~~v~a~N~~G~~---~~s~~~~~~t~  241 (245)
                      ++.|.|||.|.|..|.+   ..|..+.+++.
T Consensus        81 ~t~Y~FRV~A~N~~G~~~pS~~S~~~~~~~~  111 (115)
T 2ic2_A           81 QHTYRFRILAVYSNNDNKESNTSAKFYLQPG  111 (115)
T ss_dssp             SEEEEEEEEEEETTSCEEECCCCCCEEECC-
T ss_pred             CCEEEEEEEEEeCCCCCCCCCCCCCEEeCCC
Confidence            99999999999999974   55555655543

>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1

Probab=99.35  E-value=2.7e-12  Score=80.20  Aligned_cols=95  Identities=19%  Similarity=0.226  Sum_probs=66.9

Q ss_pred             CCCCccccCccccCCCeeEEEEEeC---CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceE
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQVD---TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY  217 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y  217 (245)
                      |.+|..... ...... +.|+|.++   ++.|+.+|.|+|+... ...|........    .......+.|.+|.+++.|
T Consensus         7 P~~P~~~~~-~~~~~~-v~l~W~~P~~~~G~pi~~Y~v~~~~~~-~~~~~~~~~~~~----~~~~~~~~~i~~L~p~t~Y   79 (105)
T 2haz_A            7 PSSPSIDQV-EPYSST-AQVQFDEPEATGGVPILKYKAEWRAVG-EEVWHSKWYDAK----EASMEGIVTIVGLKPETTY   79 (105)
T ss_dssp             CCCCEEEEE-EECSSC-EEEEEECCSCCTTSCCCEEEEEEEETT-CCCCEEEEEEHH----HHHHHSEEEECSCCTTCEE
T ss_pred             CcCCCCCEE-EEcCCc-EEEEEcCCcccCCccccEEEEEEEECC-CCCCccceEEcc----ccCCccEEEECCCCCCCEE
Confidence            444443332 223444 99999973   2345999999999875 445743211000    0001267999999999999


Q ss_pred             EEEEEEEecCCCCCCCcceEEecCC
Q psy12131        218 EASVLAKNRFGWSRPSKAYVFATEG  242 (245)
Q Consensus       218 ~~~v~a~N~~G~~~~s~~~~~~t~~  242 (245)
                      .|+|.|.|..|.|.+|....++|.+
T Consensus        80 ~~rV~A~n~~G~g~~S~~~~~~T~p  104 (105)
T 2haz_A           80 AVRLAALNGKGLGEISAASEFKTQP  104 (105)
T ss_dssp             EEEEEEEETTEECCCCCCEEEECCC
T ss_pred             EEEEEEEcCCccCCCcCCEeeEEec
Confidence            9999999999999999999999976

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.35  E-value=1.4e-11  Score=75.88  Aligned_cols=79  Identities=22%  Similarity=0.361  Sum_probs=62.1

Q ss_pred             cceEEecCCCeEEEEEEEe-ecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEE
Q psy12131         56 KQWIHTAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF  134 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  134 (245)
                      +....+.+|+.+.|.|.+. +.|.+.+.|++++........  ...   ...|.|.++..+|.|.|.|.+.|..|.....
T Consensus        17 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~--~~~---~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   91 (98)
T 1gl4_B           17 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--MDF---NGILTIRNVQPSDAGTYVCTGSNMFAMDQGT   91 (98)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE--EEE---TTEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCcee--ecC---CCEEEEeCCChhhCEEEEEEecCCCCccccE
Confidence            3456788999999999998 588899999997543332221  121   2379999999999999999999999988887


Q ss_pred             EEEEe
Q psy12131        135 IQLSG  139 (245)
Q Consensus       135 ~~~~~  139 (245)
                      +.|.+
T Consensus        92 ~~l~V   96 (98)
T 1gl4_B           92 ATLHV   96 (98)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77765

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=6.2e-12  Score=80.30  Aligned_cols=97  Identities=20%  Similarity=0.328  Sum_probs=72.4

Q ss_pred             cCCCCccccCccccCCCeeEEEEEeCC-CCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEE
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQVDT-YSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE  218 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  218 (245)
                      .|.+|..... ......++.|.|.+.. ++++.+|.|+|+... ...|..+.......       ..+.|.+|.+++.|.
T Consensus        17 ~P~~P~~l~~-~~~~~~sv~l~W~~p~~~g~i~~Y~v~~~~~~-~~~~~~~~~~~~~~-------~~~~i~~L~p~t~Y~   87 (118)
T 2yrz_A           17 VPDTPTRLVF-SALGPTSLRVSWQEPRCERPLQGYSVEYQLLN-GGELHRLNIPNPAQ-------TSVVVEDLLPNHSYV   87 (118)
T ss_dssp             CCCCCCCCEE-CCCBTTEEEEECCCCCCSSCEEEEEEEEEBSS-SCCEEEEEESCTTC-------CEEEEESCCTTCEEE
T ss_pred             CCCCCCceEE-EeCCCCEEEEEeCCCCCCCCccEEEEEEEECC-CCceEEEEcCCCCc-------CEEEeCCCCCCCEEE
Confidence            3444444332 2356789999999833 358999999999865 45676665543322       789999999999999


Q ss_pred             EEEEEEecCCCCCCCc-ceEEecCCCCC
Q psy12131        219 ASVLAKNRFGWSRPSK-AYVFATEGAET  245 (245)
Q Consensus       219 ~~v~a~N~~G~~~~s~-~~~~~t~~~~~  245 (245)
                      |+|+|.|..|.|.+|. .+.+.+.+.+|
T Consensus        88 ~~V~A~n~~G~g~~S~~~~~~~t~~~~p  115 (118)
T 2yrz_A           88 FRVRAQSQEGWGREREGVITIESQVSGP  115 (118)
T ss_dssp             EEEEEEESSCEEEEEEEEEECCCSCCCC
T ss_pred             EEEEEEcCCcCCCCcCCceEeCCCCCCC
Confidence            9999999999999988 67777766554

>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.35  E-value=8.9e-12  Score=78.09  Aligned_cols=82  Identities=22%  Similarity=0.238  Sum_probs=66.2

Q ss_pred             cCCCeeEEEEEeC--CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        153 LGPDGYRLVWQVD--TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       153 ~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      ...+++.|.|.+.  .++++.+|.|+|+... ...|..+......        ..+.|.+|.+++.|.|+|.|.|..|.|
T Consensus        18 ~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~-~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~V~A~n~~G~g   88 (107)
T 2dn7_A           18 TAMNTALLQWHPPKELPGELLGYRLQYCRAD-EARPNTIDFGKDD--------QHFTVTGLHKGTTYIFRLAAKNRAGLG   88 (107)
T ss_dssp             CSTTEEEEEEECCSSCSSCCCEEEEEEEETT-CSSCEEEEEETTC--------CEEEEECCCTTCEEEEEEEEEETTEEE
T ss_pred             cCCCEEEEEECCCCCCCCceeEEEEEEEECC-CCCCEEEEeCCCc--------cEEEeCCCCCCCEEEEEEEEEcCCccc
Confidence            4778999999984  4568999999999765 5677766554433        689999999999999999999999999


Q ss_pred             CCCcceEEecCCCC
Q psy12131        231 RPSKAYVFATEGAE  244 (245)
Q Consensus       231 ~~s~~~~~~t~~~~  244 (245)
                      .+|. ..+.|...+
T Consensus        89 ~~s~-~~~~T~~~~  101 (107)
T 2dn7_A           89 EEFE-KEIRTPEDL  101 (107)
T ss_dssp             EEEE-EEEECCCCC
T ss_pred             CCee-eEEeCCCCC
Confidence            9988 556666543

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.35  E-value=2.1e-12  Score=82.35  Aligned_cols=97  Identities=21%  Similarity=0.274  Sum_probs=72.4

Q ss_pred             cCCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceE
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY  217 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y  217 (245)
                      .|.+|...... .....++.|.|.+  +++.++.+|.|+|+.......|..+......        ..+.+.+|.+++.|
T Consensus        15 ~P~~P~~~~~~-~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y   85 (117)
T 1uem_A           15 LPGPPSKPQVT-DVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKT--------TLYTVRGLRPNTIY   85 (117)
T ss_dssp             SCBCCCCCEEE-EECSSCEEEECCCCBCSSSCCCEEEEEEEETTTEEEEEEEEEEECS--------SEEEECSCCTTCEE
T ss_pred             CccCCCCCEEE-EecCCEEEEEEeCCCCCCcCceEEEEEEEECCCCCceeEcccccCc--------CEEEECCCCCCCEE
Confidence            44555433322 3567799999998  3456889999999875334567765432222        67999999999999


Q ss_pred             EEEEEEEecCCCCCCCcceE-EecCCCCC
Q psy12131        218 EASVLAKNRFGWSRPSKAYV-FATEGAET  245 (245)
Q Consensus       218 ~~~v~a~N~~G~~~~s~~~~-~~t~~~~~  245 (245)
                      .|+|+|.|..|.|.+|.... ++|.+.+|
T Consensus        86 ~frV~A~n~~G~s~~S~~~~~v~t~~~~P  114 (117)
T 1uem_A           86 LFMVRAINPQGLSDPSPMSDPVRTQDSGP  114 (117)
T ss_dssp             EEEEEEEETTEEEEECCCCCCEECCCSSC
T ss_pred             EEEEEEECCCccCCCcCCCccEEccCCCC
Confidence            99999999999999888776 88877654

>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.35  E-value=4.2e-12  Score=80.71  Aligned_cols=84  Identities=19%  Similarity=0.234  Sum_probs=67.5

Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      .....++.|.|.+..++++.+|.|+|+... ...|.......         ...+.|.+|.+++.|.|+|+|.|..|.|.
T Consensus        28 ~~~~~sv~l~W~~p~~~~i~~Y~v~~~~~~-~~~~~~~~~~~---------~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~   97 (115)
T 1x5z_A           28 PESETSILLSWTPPRSDTIANYELVYKDGE-HGEEQRITIEP---------GTSYRLQGLKPNSLYYFRLAARSPQGLGA   97 (115)
T ss_dssp             CSSSSEEEEEEECCSCCCCCEEEECBEESS-SCCCBCCEECS---------SSEEEEECCCTTCEEEECEEEECSSCEEE
T ss_pred             eCCCCEEEEEEcCCCCCCccEEEEEEEeCC-CCCceEEecCC---------CcEEEECCCCCCCeEEEEEEEECCCcccC
Confidence            356789999999966668999999998865 34443222221         16799999999999999999999999999


Q ss_pred             CCcceEEecCCCCC
Q psy12131        232 PSKAYVFATEGAET  245 (245)
Q Consensus       232 ~s~~~~~~t~~~~~  245 (245)
                      +|..+.++|.+.+|
T Consensus        98 ~S~~~~~~T~~~~P  111 (115)
T 1x5z_A           98 STAEISARTMQSSG  111 (115)
T ss_dssp             ECCCEEEECCCCCC
T ss_pred             CCcCEEEecCCCCC
Confidence            99999999987754

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.34  E-value=8.7e-12  Score=95.85  Aligned_cols=119  Identities=10%  Similarity=0.058  Sum_probs=82.9

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEE--EEecCCeEEeecceEEecCCCeEEEEEEEeecC--CCeEEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIV--NVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP--PAKVEWFR   85 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~   85 (245)
                      +.|.|..++.+|.|.|+|.+.+..+.. ..+.+.+  .+..+|.+...+.......|+.+.|.|.+.|..  .+.+.|++
T Consensus       233 s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k  312 (376)
T 2aty_A          233 SELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQW  312 (376)
T ss_pred             EEEEechHhccCCCEEEEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEE
Confidence            469999999999999999999876642 2333333  455688887766555555689999999999863  35899999


Q ss_pred             CCEEeccCCcEEE--EecC---ceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         86 DGTAITLGGRIDM--HVSS---EKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        86 ~~~~~~~~~~~~~--~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      ++..+........  ..++   ..+.|.|......|.|.|+|.+.|..-
T Consensus       313 ~g~~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          313 NGQPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             CCEECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence            9987643221111  1111   124566776666678999999999753

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.34  E-value=1.6e-11  Score=87.79  Aligned_cols=170  Identities=12%  Similarity=0.085  Sum_probs=93.9

Q ss_pred             ceEEecCCCeEEEEEEEeecCC----CeEEEEEC--CEE---ec-------------cCCcEEEEec--CceeEEEEccC
Q psy12131         57 QWIHTAPDMRAEIICNVYANPP----AKVEWFRD--GTA---IT-------------LGGRIDMHVS--SEKHSLLVRHI  112 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~~----~~~~w~~~--~~~---~~-------------~~~~~~~~~~--~~~~~l~i~~~  112 (245)
                      ..+.+.+|+.+.|.|.+.+.+.    +.+.|++.  +..   +.             ...++.+...  .....|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (228)
T 3bae_H            8 GPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSV   87 (228)
T ss_dssp             CCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSC
T ss_pred             CceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCC
Confidence            3456889999999999998764    88999873  221   10             1235554432  23578999999


Q ss_pred             CCCCCeEEEEEEEeCCc------e---eEEEEEEEecC---CCCccccC---ccccCCCeeEEEEEeCCC-CCceEEEEE
Q psy12131        113 KDTDFGNYMCQASNNLG------S---SQQFIQLSGIP---NIPVFQKS---SRRLGPDGYRLVWQVDTY-SGIIQYLLK  176 (245)
Q Consensus       113 ~~~d~g~y~C~~~n~~g------~---~~~~~~~~~~~---~~p~~~~~---~~~~~~~~~~l~~~~~~~-~~~~~~~~~  176 (245)
                      +.+|.|.|.|.+.+..|      .   ......|.+..   .+|.....   .....++.+.|.|.+.+. ++...+ .|
T Consensus        88 ~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v-~W  166 (228)
T 3bae_H           88 DTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTL-TW  166 (228)
T ss_dssp             CGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEE-EE
T ss_pred             CcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEE-EE
Confidence            99999999999998764      1   11223444432   23332211   123568899999999654 322122 24


Q ss_pred             EEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        177 FREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      +++...............+   .......+.|......+ ..|.|.|.|..|...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~---~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~  217 (228)
T 3bae_H          167 NSGSLSSGVHTFPAVLQSD---LYTLSSSVTVTSSTWPS-ESITCNVAHPASSTK  217 (228)
T ss_dssp             GGGTCCTTEEEEEEEEETT---EEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred             eeCCcccCceEcCceeCCC---cEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCC
Confidence            4332210000100000000   00112346666665433 555566999988643

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.34  E-value=1.9e-11  Score=83.59  Aligned_cols=113  Identities=14%  Similarity=0.145  Sum_probs=79.6

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEee-cceEEecCCCeEEEEEEEeec-CCC--eEEEEEC
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE-KQWIHTAPDMRAEIICNVYAN-PPA--KVEWFRD   86 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-~~~--~~~w~~~   86 (245)
                      ..|.|.+++. | |.|.|.+.... ....+.+.|.|..+|..... +....+.+|+.++|.|.+.+. |..  .+.|+++
T Consensus        50 ~~l~l~~vs~-~-g~y~C~~~c~~-~~~~~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg  126 (185)
T 1iam_A           50 KVYELSNVQE-D-SQPMCYSNCPD-GQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRG  126 (185)
T ss_dssp             EEEEEEEECS-C-BCCEEEEECSS-CEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEET
T ss_pred             eEEEEEecCc-C-CEEEEEEECCC-CceEEEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeC
Confidence            4599999984 4 99999986543 34788999999987765433 333347899999999999885 443  5899999


Q ss_pred             CEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         87 GTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      +..+....   ........++.+.....++...|+|.|.|..+
T Consensus       127 ~~~l~~~~---~~~~~~~~tl~~~~~reD~g~~~sC~A~~~l~  166 (185)
T 1iam_A          127 EKELKREP---AVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR  166 (185)
T ss_dssp             TEEEEEEE---CCTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             CEEccccc---CCCccccEEEEEeceeccCCCeEEEEEEecCc
Confidence            98876421   00111233566665555455599999999876

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.34  E-value=3.7e-11  Score=87.97  Aligned_cols=130  Identities=15%  Similarity=0.080  Sum_probs=78.6

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEE--CCEE------------eccC----CcEEEEe-cCceeEEEEc
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGTA------------ITLG----GRIDMHV-SSEKHSLLVR  110 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~~------------~~~~----~~~~~~~-~~~~~~l~i~  110 (245)
                      +.+...+..+.+.+|+.+.|.|.+. .+.+.+.|++  .+..            ....    .++.+.. ......|.|.
T Consensus        27 ~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~  105 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQ  105 (268)
T ss_dssp             SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEEC
T ss_pred             ceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEEC
Confidence            4445556677889999999999986 5778999998  2211            1111    4555443 2335789999


Q ss_pred             cCCCCCCeEEEEEEEeC--CceeEEEEEEEecC-----CCCccccC----ccccCCCeeEEEEEeCCCCCceEEEEEEEe
Q psy12131        111 HIKDTDFGNYMCQASNN--LGSSQQFIQLSGIP-----NIPVFQKS----SRRLGPDGYRLVWQVDTYSGIIQYLLKFRE  179 (245)
Q Consensus       111 ~~~~~d~g~y~C~~~n~--~g~~~~~~~~~~~~-----~~p~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  179 (245)
                      +++.+|.|.|.|.+.+.  .........+.+..     .+|.....    .....++.+.|.|.+.+..|...-..|+++
T Consensus       106 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~  185 (268)
T 3pl6_D          106 RTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  185 (268)
T ss_dssp             SCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEES
T ss_pred             CCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEEC
Confidence            99999999999999974  22222222333322     23332211    112347899999999664332212235554


Q ss_pred             e
Q psy12131        180 R  180 (245)
Q Consensus       180 ~  180 (245)
                      .
T Consensus       186 g  186 (268)
T 3pl6_D          186 G  186 (268)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.34  E-value=1.1e-11  Score=78.27  Aligned_cols=94  Identities=26%  Similarity=0.380  Sum_probs=70.3

Q ss_pred             cCCCCccccCccccCCCeeEEEEEeC--CCCCceEEEEEEEeec-CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCce
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQVD--TYSGIIQYLLKFRERE-ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ  216 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  216 (245)
                      .|.+|...... .....++.|.|.+.  .++++.+|.|+|+... ....|..+..  .        ...+.+.+|.+++.
T Consensus        10 ~P~~P~~l~~~-~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~--~--------~~~~~i~~L~p~t~   78 (111)
T 1x5l_A           10 APSQVVVIRQE-RAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKA--V--------TTRATVSGLKPGTR   78 (111)
T ss_dssp             CCCCCCCEECS-CBCSSCEEEEECCCSCCCSCCCEEEEEEEESSSCCSSCEEEEE--S--------SSEEEECSCCTTCE
T ss_pred             CCCCCceEEEE-EcCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCceeEEEecC--C--------CCEEEEcCCCCCCE
Confidence            34444433332 36678999999983  3567899999998865 2233433322  1        26799999999999


Q ss_pred             EEEEEEEEecCCCCCCCcceEEecCCCC
Q psy12131        217 YEASVLAKNRFGWSRPSKAYVFATEGAE  244 (245)
Q Consensus       217 y~~~v~a~N~~G~~~~s~~~~~~t~~~~  244 (245)
                      |.|+|+|.|..|.|.+|..+.++|.+.+
T Consensus        79 Y~~~V~A~n~~G~g~~S~~~~~~T~~~~  106 (111)
T 1x5l_A           79 YVFQVRARTSAGCGRFSQAMEVETGKPS  106 (111)
T ss_dssp             EEECEEEEETTEECCCCCCEEEECCCTT
T ss_pred             EEEEEEEEeCCcCCCCcccEEEEcCCCC
Confidence            9999999999999999999999998764

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.34  E-value=2.6e-11  Score=87.35  Aligned_cols=114  Identities=13%  Similarity=0.137  Sum_probs=72.1

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCCCeEEEEE--------------CCEEec---cCCcEEEEe-cCceeEEEEccCC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--------------DGTAIT---LGGRIDMHV-SSEKHSLLVRHIK  113 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--------------~~~~~~---~~~~~~~~~-~~~~~~l~i~~~~  113 (245)
                      +...+..+.+.+|+.+.|.|.+.+ +.+.+.|++              ++....   ...++.+.. ......|.|.+++
T Consensus         5 v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~   83 (240)
T 3q5y_A            5 VVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE   83 (240)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCC
T ss_pred             cccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCC
Confidence            445566778899999999999875 778999998              111111   123555443 3346689999999


Q ss_pred             CCCCeEEEEEEEeC---CceeEE--EEEEEe---cCCCCccccC----ccccCCCeeEEEEEeCC
Q psy12131        114 DTDFGNYMCQASNN---LGSSQQ--FIQLSG---IPNIPVFQKS----SRRLGPDGYRLVWQVDT  166 (245)
Q Consensus       114 ~~d~g~y~C~~~n~---~g~~~~--~~~~~~---~~~~p~~~~~----~~~~~~~~~~l~~~~~~  166 (245)
                      .+|.|.|.|.+.+.   ......  .+.+..   .+.+|.....    .....+..+.|.|.+.+
T Consensus        84 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g  148 (240)
T 3q5y_A           84 LEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARG  148 (240)
T ss_dssp             GGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEE
T ss_pred             hhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEee
Confidence            99999999999832   111222  333332   1233433211    11234689999999965

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.34  E-value=4.9e-13  Score=94.72  Aligned_cols=117  Identities=12%  Similarity=0.140  Sum_probs=76.4

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEE---EEecCCeEEeecc-eEEecCCCeEEEEEEEeec-CC-CeEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV---NVIYPPEVSVEKQ-WIHTAPDMRAEIICNVYAN-PP-AKVEWF   84 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l---~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~-~~-~~~~w~   84 (245)
                      +.|.|.+++.+|+|.|+|.+.+..+.. .....+   .+..+|.+...+. ...+..|+.+.|.|.+.|. |. +.+.|+
T Consensus        66 ~~L~I~~~~~~D~g~Y~C~~~~~~~~~-~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~  144 (214)
T 1ow0_A           66 SVLPGCAEPWNHGKTFTCTAAYPESKT-PLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWL  144 (214)
T ss_dssp             EECTTTHHHHHHTCEEEEEECCSSCSS-CEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEE
T ss_pred             EEEEEeHHHcCCCCeEEEEEecCCCCC-ceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEE
Confidence            458899999999999999999876542 222233   2346777655432 2235678999999999985 43 499999


Q ss_pred             ECCEEeccCCcEE---EEe---cCc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         85 RDGTAITLGGRID---MHV---SSE----KHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        85 ~~~~~~~~~~~~~---~~~---~~~----~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +++..+.......   ...   .+.    .+.|.+......+.|.|+|.+.|..
T Consensus       145 k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~  198 (214)
T 1ow0_A          145 QGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA  198 (214)
T ss_dssp             ETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             ECCEECCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCC
Confidence            9998876542111   111   111    1233444333345789999999975

>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A

Probab=99.33  E-value=8.9e-10  Score=77.21  Aligned_cols=124  Identities=17%  Similarity=0.160  Sum_probs=89.7

Q ss_pred             CceeEEEEccCCCCCCeEEEEEEEeCCceeEE-EEEEEecCCCCccccCccccCCCeeEEEEEeCCCCCceEEEEEEEee
Q psy12131        102 SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRER  180 (245)
Q Consensus       102 ~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  180 (245)
                      .....+.+.++.+.....++..+.|..|.... .+.....+.+|..... ......++.|.|.+..++++.+|.+.|+..
T Consensus        74 ~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~t~~~~p~P~~l~~-~~~~~~sv~l~W~~p~~~~i~~Y~v~~~~~  152 (203)
T 2gee_A           74 SSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTDLRF-TNIGPDTMRVTWAPPPSIDLTNFLVRYSPV  152 (203)
T ss_dssp             TTCCEEEECSCCTTCEEEEEEEEESSSCBCCCEEEEEECCCCCCEEEEE-EEEETTEEEEEEECCSSCCCSEEEEEEEET
T ss_pred             CCccEEEeCCCCCCCEEEEEEEEEeCCCccccEeeeecCCCcCCCceEE-EEcCCCEEEEEEcCCCCCCccEEEEEEEEC
Confidence            34557889999998888889999987765433 2222222233433332 235678999999997667899999999985


Q ss_pred             cCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCc
Q psy12131        181 EELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSK  234 (245)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~  234 (245)
                      .....|.........        ..+.+.+|.+++.|.|+|.|.|..|.|.++.
T Consensus       153 ~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~  198 (203)
T 2gee_A          153 KNEEDVAELSISPSD--------NAVVLTNLLPGTEYVVSVSSVYEQHESTPLR  198 (203)
T ss_dssp             TCGGGCEEEEECTTC--------CEEEECSCCTTCEEEEEEEEEETTEECCCEE
T ss_pred             CCCCccEEEEcCCCc--------CEEEECCCCCCCEEEEEEEEecCCCcCCCee
Confidence            433445555444333        7899999999999999999999999998753

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=99.33  E-value=1.3e-10  Score=83.36  Aligned_cols=135  Identities=16%  Similarity=0.179  Sum_probs=95.3

Q ss_pred             ceeEEEEccCCCCCCeEEEEEEEeCCceeEE--EEEEEe---cCCCCccccCccccCCCeeEEEEEeC--CCCCceEEEE
Q psy12131        103 EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ--FIQLSG---IPNIPVFQKSSRRLGPDGYRLVWQVD--TYSGIIQYLL  175 (245)
Q Consensus       103 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~--~~~~~~---~~~~p~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~  175 (245)
                      ....+.|.++.+.....++..+.|..|....  .+.+..   .|.+|.... .......++.|.|.+.  .++++.+|.+
T Consensus        56 ~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~~~T~~~~P~~P~~l~-~~~~~~~sv~l~W~~p~~~~g~i~~Y~v  134 (234)
T 3f7q_A           56 KVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLA-FNVVSSTVTQLSWAEPAETNGEITAYEV  134 (234)
T ss_dssp             SSSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECCCCCCCCCCCCE-EEECSSSCEEEECCCCSCCSSCCCEEEE
T ss_pred             CccEEEECCCCCCCEEEEEEEEEeCCCcCCCCCeEEEEcCCCCCCCCCccE-EEEecCCEEEEEEcCCCCCCCceeEEEE
Confidence            3457889999998888889999998775433  233332   233333322 2235677899999983  3568999999


Q ss_pred             EEEeecCC----CCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCc-ceEEecCCCCC
Q psy12131        176 KFREREEL----TPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSK-AYVFATEGAET  245 (245)
Q Consensus       176 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~-~~~~~t~~~~~  245 (245)
                      .|+.....    ..|..+......       ...+.+.+|.+++.|.|+|.|.|..|.|.+|. .+.++|.+.+|
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~T~~~~P  202 (234)
T 3f7q_A          135 CYGLVNDDNRPIGPMKKVLVDNPK-------NRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRP  202 (234)
T ss_dssp             EEEEBCTTSCBSSCCEECCCSCTT-------CCEEEEECCCTTCCEEEEEEEEETTEECCCEEEEECGGGSCCCC
T ss_pred             EEEECCCCCCccCcceEEEecCCc-------ceEEEeCCCCCCCeEEEEEEEECCCccCCCcCceeEeecCCCCC
Confidence            99986511    224433332222       26899999999999999999999999999987 58888877643

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.33  E-value=4.4e-12  Score=79.68  Aligned_cols=94  Identities=20%  Similarity=0.271  Sum_probs=69.3

Q ss_pred             CCCCccccCccccCCCeeEEEEEeC--CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEE
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQVD--TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE  218 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  218 (245)
                      |.+|..... ......++.|.|.++  .++++.+|.|.|+... ...|........        ...+.|.+|.+++.|.
T Consensus         8 P~~P~~l~~-~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~-~~~~~~~~~~~~--------~~~~~l~~L~p~t~Y~   77 (108)
T 2djs_A            8 PSTVPIMHQ-VSATMRSITLSWPQPEQPNGIILDYEIRYYEKE-HNEFNSSMARSQ--------TNTARIDGLRPGMVYV   77 (108)
T ss_dssp             CCCCSCCEE-EEECSSEEEEECCCCSCCSSCEEEEEEEEEETT-SCSTTCEEEEES--------SSEEEEESCCTTCEEE
T ss_pred             CCCCcceEE-EecCCCEEEEEECCCCCCCCeEEEEEEEEEECC-CCCcceeEEecC--------ccEEEEcCCCCCCEEE
Confidence            444443322 235678999999983  4467899999998865 222322222111        2679999999999999


Q ss_pred             EEEEEEecCCCCCCCcceEEecCCCC
Q psy12131        219 ASVLAKNRFGWSRPSKAYVFATEGAE  244 (245)
Q Consensus       219 ~~v~a~N~~G~~~~s~~~~~~t~~~~  244 (245)
                      |+|+|.|..|.|.+|..+.++|.+..
T Consensus        78 ~~V~A~n~~G~g~~S~~~~~~T~~~~  103 (108)
T 2djs_A           78 VQVRARTVAGYGKFSGKMCFQTLTDS  103 (108)
T ss_dssp             EEEEEEESSCEEEECCCEEEECCCSS
T ss_pred             EEEEEEeCCEECCCCCCEEEEeCCCC
Confidence            99999999999999999999998763

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.33  E-value=3.5e-12  Score=81.85  Aligned_cols=98  Identities=21%  Similarity=0.344  Sum_probs=73.1

Q ss_pred             ecCCCCcccc-CccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEe-eCCCCCCCcceeeeEEEecCCCCC
Q psy12131        139 GIPNIPVFQK-SSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIV-IPSDGSLAGPIYTQSYNITGLQLF  214 (245)
Q Consensus       139 ~~~~~p~~~~-~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~~  214 (245)
                      ..|.+|.... ........++.|.|.+  +++.++..|.++|+..  ...|..+. .....       ...+.+.+|.++
T Consensus        16 ~~P~~P~~~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~--~~~~~~~~~~~~~~-------~~~~~v~~L~p~   86 (121)
T 1wf5_A           16 QLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSEN--NAPWTVLLASVDPK-------ATSVTVKGLVPA   86 (121)
T ss_dssp             CCCCCCSSCEEEECSSSTTEEEEECCCCCCCSSCEEEEEEEEECT--TCCCEEEESSCCTT-------CCEEEEESCCTT
T ss_pred             eCCccCCCcceeeEeccCCEEEEEEcCCCCCCCcceEEEEEEEcC--CCCceEeEcccCCC-------ccEEEECCcCCC
Confidence            3456665541 1223567799999998  3456899999999885  37787662 21111       267999999999


Q ss_pred             ceEEEEEEEEecCCCCCCCcce-EEecCCCCC
Q psy12131        215 TQYEASVLAKNRFGWSRPSKAY-VFATEGAET  245 (245)
Q Consensus       215 ~~y~~~v~a~N~~G~~~~s~~~-~~~t~~~~~  245 (245)
                      +.|.|||.|.|..|.|.+|... .++|.+.+|
T Consensus        87 t~Y~frV~A~n~~G~s~~S~~~~~~~t~~~~P  118 (121)
T 1wf5_A           87 RSYQFRLCAVNDVGKGQFSKDTERVSLPESGP  118 (121)
T ss_dssp             CEEEEEEEEEESSCEEEECCCCSCEECCCCSS
T ss_pred             CEEEEEEEEEcCCccCCCcCCcceeEcCCCCC
Confidence            9999999999999999999886 588887654

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.33  E-value=5.5e-11  Score=85.22  Aligned_cols=177  Identities=14%  Similarity=0.127  Sum_probs=93.3

Q ss_pred             eEEecCCCeEEEEEEEeecC--CCeEEEEECC--E---Eec-------------cCCcEEEEe--cCceeEEEEccCCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANP--PAKVEWFRDG--T---AIT-------------LGGRIDMHV--SSEKHSLLVRHIKDT  115 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~~--~---~~~-------------~~~~~~~~~--~~~~~~l~i~~~~~~  115 (245)
                      .+.+.+|+.+.|.|.+.+.+  .+.+.|++..  .   .+.             ...++.+..  .+....|.|.+++.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (232)
T 1dn0_B            9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA   88 (232)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcc
Confidence            45678999999999998765  5689999732  1   110             124555543  234568999999999


Q ss_pred             CCeEEEEEEE--eCCc----eeEEEEEEEecC---CCCcccc---CccccCC-CeeEEEEEeCCCCCceEEEEEEE-eec
Q psy12131        116 DFGNYMCQAS--NNLG----SSQQFIQLSGIP---NIPVFQK---SSRRLGP-DGYRLVWQVDTYSGIIQYLLKFR-ERE  181 (245)
Q Consensus       116 d~g~y~C~~~--n~~g----~~~~~~~~~~~~---~~p~~~~---~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~-~~~  181 (245)
                      |.|.|.|.+.  +..+    .......|.+..   .+|....   ......+ +.+.|.|.+.+..|......|++ +..
T Consensus        89 D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~  168 (232)
T 1dn0_B           89 DTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNS  168 (232)
T ss_dssp             GCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSC
T ss_pred             cCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCC
Confidence            9999999998  4211    111223444432   2343321   1122356 88999999965422211223555 322


Q ss_pred             CCCCeEEEeeCCCCCCCccee-eeEEEecCCCC--CceEEEEEEEEecCCCCCCCcceE
Q psy12131        182 ELTPWRNIVIPSDGSLAGPIY-TQSYNITGLQL--FTQYEASVLAKNRFGWSRPSKAYV  237 (245)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~--~~~y~~~v~a~N~~G~~~~s~~~~  237 (245)
                      .-.. .. ....... ..... ...+.|.....  .+...|.|.|.|..|.......+.
T Consensus       169 ~l~~-~~-~~~~~~~-~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~  224 (232)
T 1dn0_B          169 DISS-TR-GFPSVLR-GGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLP  224 (232)
T ss_dssp             EECC-EE-ECCCEEE-TTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECC
T ss_pred             ceee-EE-ECCcccc-CCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecC
Confidence            0000 00 0000000 01111 23566766654  334555666999988654443333

>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C

Probab=99.33  E-value=2.9e-11  Score=74.94  Aligned_cols=82  Identities=20%  Similarity=0.199  Sum_probs=65.8

Q ss_pred             ccCCCeeEEEEEeC----CCCCceEEEEEEEeecCC--CCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEe
Q psy12131        152 RLGPDGYRLVWQVD----TYSGIIQYLLKFREREEL--TPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKN  225 (245)
Q Consensus       152 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N  225 (245)
                      .....++.|+|.+.    .++.+.+|.|.|+.....  ..|....+....        ..+.|.+|.+++.|.|+|.|.|
T Consensus        15 ~~s~tsi~v~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~~~~~~~v~~~~--------~~~~l~~L~p~t~Y~v~V~A~n   86 (102)
T 3n1f_C           15 AVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSK--------QWHMIGHLQPETSYDIKMQCFN   86 (102)
T ss_dssp             ECSSSCEEEEEECCC-----CCCCEEEEEEEETTCCCGGGCEEEEEETTC--------SEEEECSCCTTCEEEEEEEEEE
T ss_pred             EcCCCEEEEEeECCChhhcCCccceEEEEEEECCCCCCCceEEEEEcCCc--------eEEECCCCCCCCEEEEEEEEEC
Confidence            46678999999983    467899999999986522  357655554432        5689999999999999999999


Q ss_pred             cCCCCCCCcceEEecC
Q psy12131        226 RFGWSRPSKAYVFATE  241 (245)
Q Consensus       226 ~~G~~~~s~~~~~~t~  241 (245)
                      ..|.|..|..+.++|.
T Consensus        87 ~~G~G~~S~~~~~~T~  102 (102)
T 3n1f_C           87 EGGESEFSNVMICETK  102 (102)
T ss_dssp             TTEECCCCCCEEEECC
T ss_pred             CCcCCCCCCCEEeecC
Confidence            9999999999999874

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.33  E-value=1.1e-11  Score=82.10  Aligned_cols=87  Identities=13%  Similarity=0.185  Sum_probs=65.6

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCCCeEEEEE---------CCEEeccCCcEEEE-ecCceeEEEEccCCCCCCeEEE
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR---------DGTAITLGGRIDMH-VSSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~---------~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      +...+..+.+..|+.+.|.|.+.+.+.+.+.|++         ++..+ ...++.+. .......|.|.++..+|.|.|.
T Consensus        41 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~-~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~  119 (145)
T 1z9m_A           41 SQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRAL-RDNRIQLVTSTPHELSISISNVALADEGEYT  119 (145)
T ss_dssp             TCCBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECS-CCTTEEEEEECSSEEEEEECSCCGGGCEEEE
T ss_pred             eecCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceec-ccCCEEEecCCCCeEEEEECCCChhhCEEEE
Confidence            3445667888999999999999998889999994         33222 23444432 2334678999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEec
Q psy12131        122 CQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus       122 C~~~n~~g~~~~~~~~~~~  140 (245)
                      |.+.|. |.....+.|.+.
T Consensus       120 C~~~n~-~~~~~~~~L~V~  137 (145)
T 1z9m_A          120 CSIFTM-PVRTAKSLVTVL  137 (145)
T ss_dssp             EEECSS-SCEEEEEEEEEE
T ss_pred             EEEEcC-CCceEEEEEEEE
Confidence            999998 777666666654

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.32  E-value=5.5e-12  Score=82.80  Aligned_cols=86  Identities=16%  Similarity=0.293  Sum_probs=66.5

Q ss_pred             EecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC----------CcEEEE---ecCceeEEEEccC
Q psy12131         46 VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG----------GRIDMH---VSSEKHSLLVRHI  112 (245)
Q Consensus        46 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~----------~~~~~~---~~~~~~~l~i~~~  112 (245)
                      ...+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+...          .++.+.   .......|.|.++
T Consensus        18 ~~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v   97 (137)
T 3qr2_A           18 GSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL   97 (137)
T ss_dssp             ---CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSC
T ss_pred             CCCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCC
Confidence            346899988888888999999999999999999999999976544321          122221   1123568999999


Q ss_pred             CCCCCeEEEEEEEeCCcee
Q psy12131        113 KDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus       113 ~~~d~g~y~C~~~n~~g~~  131 (245)
                      ..+|.|.|.|.+.|..|..
T Consensus        98 ~~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           98 VEEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             CGGGCEEEEEEEECCTTSS
T ss_pred             CcccCEEEEEEEEecCCcc
Confidence            9999999999999998865

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=99.32  E-value=4.4e-10  Score=92.88  Aligned_cols=133  Identities=17%  Similarity=0.203  Sum_probs=94.3

Q ss_pred             ceeEEEEccCCCCCCeEEEEEEEeCCce---eEE--EEEEE---ecCCCCccccCcccc--CCC---eeEEEEEe--CCC
Q psy12131        103 EKHSLLVRHIKDTDFGNYMCQASNNLGS---SQQ--FIQLS---GIPNIPVFQKSSRRL--GPD---GYRLVWQV--DTY  167 (245)
Q Consensus       103 ~~~~l~i~~~~~~d~g~y~C~~~n~~g~---~~~--~~~~~---~~~~~p~~~~~~~~~--~~~---~~~l~~~~--~~~  167 (245)
                      ....+.|.++.+...+.|++.|.|..|.   ...  .+...   ..|.+|...... ..  ..+   ++.|.|.+  ..+
T Consensus       221 ~~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P~~l~~~-~~~~~~~g~~sv~l~W~pP~~~~  299 (680)
T 1zlg_A          221 TDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLA-NSTVNSDGSVTVTIVWDLPEEPD  299 (680)
T ss_pred             CCCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCCCceEee-eeeecCCCceEEEEEecCCCCCC
Confidence            3456889999998899999999998772   111  22221   123344433332 23  456   99999997  356


Q ss_pred             CCceEEEEEEEee-c-----CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcc---eEE
Q psy12131        168 SGIIQYLLKFRER-E-----ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKA---YVF  238 (245)
Q Consensus       168 ~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~---~~~  238 (245)
                      +++.+|.|.|+.. .     ....|.........        ..+.+.+|.+++.|.|+|.|.|..|.|.+|..   +.+
T Consensus       300 g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~v~~  371 (680)
T 1zlg_A          300 IPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQ--------NSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHF  371 (680)
T ss_pred             CceeEEEEEEEecccccccCCccceEEEEEcCCe--------eEEEeCCCCCCCEEEEEEEEEECCCcCCCCCCceeEEE
Confidence            7899999999832 1     12357665554332        68999999999999999999999999998877   888


Q ss_pred             ecCCCC
Q psy12131        239 ATEGAE  244 (245)
Q Consensus       239 ~t~~~~  244 (245)
                      +|..++
T Consensus       372 ~T~~~~  377 (680)
T 1zlg_A          372 TSTHAT  377 (680)
T ss_pred             ECCCCC
Confidence            887654

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.32  E-value=1.2e-11  Score=100.40  Aligned_cols=170  Identities=14%  Similarity=0.044  Sum_probs=97.4

Q ss_pred             eEEecCCCeEEEEEEE-eecCCCeEEEEECCEEecc------------CCcEEEEecCceeEEEEccCCCCCCeEEEEEE
Q psy12131         58 WIHTAPDMRAEIICNV-YANPPAKVEWFRDGTAITL------------GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA  124 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~-~~~~~~~~~w~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  124 (245)
                      ...+..|+.+.|.|.+ .+.|.+.+.|++++..+..            ..+..+..   ...|.|.+++.+|.|.|+|.+
T Consensus       375 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~L~i~~v~~~D~G~Y~C~~  451 (581)
T 3o3u_N          375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLP---NGSLFLPAVGIQDEGIFRCQA  451 (581)
T ss_dssp             EEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECT---TSCEEESSCCGGGCEEEEEEE
T ss_pred             ccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcC---CceEEEeccccccCeEEEEEE
Confidence            4567899999999999 7788899999997542210            11222222   237999999999999999999


Q ss_pred             EeCCcee-EEEEEEEe--cCCCCccccCc-ccc-CCCeeEEEEEeCCCCCceEEEEEEEeec---CCCCeEEEe--eCCC
Q psy12131        125 SNNLGSS-QQFIQLSG--IPNIPVFQKSS-RRL-GPDGYRLVWQVDTYSGIIQYLLKFRERE---ELTPWRNIV--IPSD  194 (245)
Q Consensus       125 ~n~~g~~-~~~~~~~~--~~~~p~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~  194 (245)
                      .|..|.. ...+.|.+  .|.+|.+.... ... .+..+.|.|.+.+..|...+ .|+++..   .........  ....
T Consensus       452 ~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i-~W~~~g~~l~~~~~~~~~~~~~~~~  530 (581)
T 3o3u_N          452 MNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTL-SWHLDGKPLVPNEKGVSVKEQTRRH  530 (581)
T ss_dssp             ECTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEE-EEEETTEECCTTSTTEEEEEEEEEC
T ss_pred             EcCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeE-EEEECCEECCCCCCeEEEEeeeEEc
Confidence            9988876 55555554  44445443332 122 33455779998653122222 2454433   111111110  0000


Q ss_pred             CCCCcceeeeEEEecCCC-CCceEEEEEEEEecCCCCC
Q psy12131        195 GSLAGPIYTQSYNITGLQ-LFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       195 ~~~~~~~~~~~~~i~~l~-~~~~y~~~v~a~N~~G~~~  231 (245)
                      .....-.....+.+..+. ......|+|.|.|..+...
T Consensus       531 ~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~~  568 (581)
T 3o3u_N          531 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHR  568 (581)
T ss_dssp             TTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSSC
T ss_pred             CCCceEEEEEEEEEEeccccCCCceEEEEEeccCCCCC
Confidence            000111113457777665 3334456666999986544

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.32  E-value=2.3e-10  Score=81.30  Aligned_cols=109  Identities=16%  Similarity=0.236  Sum_probs=69.6

Q ss_pred             eEEecCCCeEEEEEEEeecC--CCeEEEEEC--CEE---e----------------ccCCcEEEEec--CceeEEEEccC
Q psy12131         58 WIHTAPDMRAEIICNVYANP--PAKVEWFRD--GTA---I----------------TLGGRIDMHVS--SEKHSLLVRHI  112 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~--~~~---~----------------~~~~~~~~~~~--~~~~~l~i~~~  112 (245)
                      .+.+.+|+.+.|.|.+.+.+  .+.+.|++.  +..   +                ....++.+...  .....|.|.++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   88 (221)
T 3m8o_H            9 GGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSL   88 (221)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSC
T ss_pred             CEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCC
Confidence            45688999999999998743  568999972  111   0                01245554432  34568999999


Q ss_pred             CCCCCeEEEEEEEeCC--ceeEEEEEEEec---CCCCccc--cCccccCCCeeEEEEEeCC
Q psy12131        113 KDTDFGNYMCQASNNL--GSSQQFIQLSGI---PNIPVFQ--KSSRRLGPDGYRLVWQVDT  166 (245)
Q Consensus       113 ~~~d~g~y~C~~~n~~--g~~~~~~~~~~~---~~~p~~~--~~~~~~~~~~~~l~~~~~~  166 (245)
                      +.+|.|.|.|.+.+..  ........+.+.   +.+|...  .......+..+.|.|.+.+
T Consensus        89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~g~~v~L~C~~~~  149 (221)
T 3m8o_H           89 KSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQG  149 (221)
T ss_dssp             CGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSCCCTTEEEEEEEEEE
T ss_pred             CHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCcccccCCCEEEEEEEEe
Confidence            9999999999999863  112222233332   2333332  1111157889999999965

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=99.32  E-value=2.4e-09  Score=82.15  Aligned_cols=208  Identities=12%  Similarity=0.026  Sum_probs=130.7

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeEEeecceE--EecCCCeEEEEEEEeecCC-C--eEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWI--HTAPDMRAEIICNVYANPP-A--KVEW   83 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~--~~~~g~~~~l~C~~~~~~~-~--~~~w   83 (245)
                      ....+.|.++.+.....|+..|.+..|.......... ..+|    .+..+  .......+.|.+....... .  .+.|
T Consensus       148 ~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~~~~-t~~~----~p~~l~~~~~~~~si~l~W~~p~~~~i~~Y~v~~  222 (375)
T 3t1w_A          148 SVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQ-TAVP----PPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRY  222 (375)
T ss_dssp             TCCEEEEECCCTTCEEEEEEEEEETTEECCCEEEEEE-CCCC----CCEEEEEESCCSSCEEEEEECCSSCCCCEEEEEE
T ss_pred             CcceEEEeCCCCCCEEEEEEEEEeCCcccCCeeeeee-cCCC----CCceeEEEecccCEEEEEEcCCCCCCccEEEEEE
Confidence            3455888999988888888888888765322222211 1222    11111  1223556666666521111 1  2334


Q ss_pred             EECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE-EEEEEecCCCCccccCccccCCCeeEEEE
Q psy12131         84 FRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ-FIQLSGIPNIPVFQKSSRRLGPDGYRLVW  162 (245)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~l~~  162 (245)
                      ...+.   ...............+.+.++.+.....|+..+.|..|.... .......|.+|..... ......++.|.|
T Consensus       223 ~~~~~---~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~~~~~t~p~~P~~l~~-~~~~~~sv~l~W  298 (375)
T 3t1w_A          223 SPVKN---EEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDF-SDITANSFTVHW  298 (375)
T ss_dssp             EEGGG---TTCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECCCCCCEEEEE-ESCCSSCEEEEE
T ss_pred             EeCCC---CCCcEEEEcCCCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCceeeEEecCCCCCCccEe-eeccCCEEEEEE
Confidence            33211   012222333344467889999998888889999998776443 3333345555554433 235678999999


Q ss_pred             EeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCCc
Q psy12131        163 QVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSK  234 (245)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~  234 (245)
                      .+.. +++.+|.+.|+.......+.........        ..+.+.+|.+++.|.|+|.|.|..|.|.+..
T Consensus       299 ~~p~-~~~~~Y~v~~~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~V~A~~~~G~s~p~s  361 (375)
T 3t1w_A          299 IAPR-ATITGYRIRHHPEHFSGRPREDRVPHSR--------NSITLTNLTPGTEYVVSIVALNGREESPLLI  361 (375)
T ss_dssp             ECCS-SCCSEEEEEEEETTCCSSCEEEEEETTC--------CEEEECSCCTTCEEEEEEEEEETTEECCCEE
T ss_pred             CCCC-cceeeEEEEEEECCCCCcceeEEcCCCc--------cEEEECCCCCCCEEEEEEEEECCCCCCCcee
Confidence            9853 5788999999987532455555444333        6899999999999999999999999998753

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.32  E-value=4.4e-11  Score=96.50  Aligned_cols=92  Identities=21%  Similarity=0.373  Sum_probs=84.4

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      ..|.+...+....+.+|+++.+.|.+.|.|.|.+.|++++.++....++.+...+....|.|..+...|.|.|+|.|.|.
T Consensus       481 ~~P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N~  560 (573)
T 3uto_A          481 AQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNS  560 (573)
T ss_dssp             GSCEEEECCCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             cCCccccCCCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEeC
Confidence            46777777777888999999999999999999999999999999988999988888899999999999999999999999


Q ss_pred             CceeEEEEEEEe
Q psy12131        128 LGSSQQFIQLSG  139 (245)
Q Consensus       128 ~g~~~~~~~~~~  139 (245)
                      .|..+..+.|.+
T Consensus       561 ~G~~~~~v~l~V  572 (573)
T 3uto_A          561 YGTKEEIVFLNV  572 (573)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEE
Confidence            999999888775

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.31  E-value=2.3e-11  Score=78.33  Aligned_cols=87  Identities=14%  Similarity=0.235  Sum_probs=66.5

Q ss_pred             ecceEEecCCCeEEEEEEEeecCCCeEEEEECCEE-ec-------cCCcEEEE-ecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         55 EKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTA-IT-------LGGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        55 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~-~~-------~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      .+..+.+.+|+++.|.|.+.+.|.+.+.|++.+.. +.       ...++.+. .......|.|.+++.+|.|.|.|.+.
T Consensus         7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   86 (124)
T 3rbg_A            7 HTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHY   86 (124)
T ss_dssp             SEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEE
Confidence            34566788999999999999999999999975432 21       33444443 23345789999999999999999999


Q ss_pred             eCCceeEEEEEEEecCC
Q psy12131        126 NNLGSSQQFIQLSGIPN  142 (245)
Q Consensus       126 n~~g~~~~~~~~~~~~~  142 (245)
                      |. |.....+.|.+...
T Consensus        87 n~-g~~~~~~~l~V~~~  102 (124)
T 3rbg_A           87 SD-SVSTKEVKVIVLAT  102 (124)
T ss_dssp             SS-SEEEEEEEEEEECC
T ss_pred             cC-CCCcEEEEEEEEeC
Confidence            99 88777777776533

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.31  E-value=1.7e-10  Score=85.04  Aligned_cols=120  Identities=14%  Similarity=0.162  Sum_probs=77.2

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECC--EE---e----------c----cCCcEEEEe-cCceeEEEE
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDG--TA---I----------T----LGGRIDMHV-SSEKHSLLV  109 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~--~~---~----------~----~~~~~~~~~-~~~~~~l~i  109 (245)
                      +.+...+..+.+.+|+.+.|.|.+.+.+.+.+.|++..  ..   +          .    ...++.+.. ......|.|
T Consensus        25 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I  104 (279)
T 2wbj_D           25 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV  104 (279)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEE
T ss_pred             ceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEE
Confidence            34445566778899999999999988788899999853  11   1          0    123555543 245668999


Q ss_pred             ccCCCCCCeEEEEEEEeCCc------e--eEEEEEEEec---CCCCccccCc----cccCCCeeEEEEEeCCCCC
Q psy12131        110 RHIKDTDFGNYMCQASNNLG------S--SQQFIQLSGI---PNIPVFQKSS----RRLGPDGYRLVWQVDTYSG  169 (245)
Q Consensus       110 ~~~~~~d~g~y~C~~~n~~g------~--~~~~~~~~~~---~~~p~~~~~~----~~~~~~~~~l~~~~~~~~~  169 (245)
                      .+++.+|.|.|.|.+.|..+      .  ....+.+...   +.+|.+....    ....+..+.|.|.+.+..|
T Consensus       105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P  179 (279)
T 2wbj_D          105 TSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYP  179 (279)
T ss_dssp             SSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBS
T ss_pred             ccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcC
Confidence            99999999999999999421      1  1123333321   1344433221    1225688999999966433

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=6.7e-12  Score=80.89  Aligned_cols=81  Identities=21%  Similarity=0.226  Sum_probs=66.2

Q ss_pred             ccCCCeeEEEEEeC----CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecC
Q psy12131        152 RLGPDGYRLVWQVD----TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF  227 (245)
Q Consensus       152 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~  227 (245)
                      .....++.|.|.+.    .++++.+|.|+|+... ...|... .....        ..+.|.+|.+++.|.|+|.|.|..
T Consensus        39 ~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~-~~~~~~~-~~~~~--------~~~~i~~L~p~t~Y~~~V~A~n~~  108 (124)
T 2ed9_A           39 VVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTT-RRGEMET-LEPNN--------LWYLFTGLEKGSQYSFQVSAMTVN  108 (124)
T ss_dssp             EEETTEEEEECBCCCTTTCCSCCCEEEEEEEESS-SSCCEEE-ECSSC--------SEEEEECCCSSCEEEECEEEECSS
T ss_pred             EcCCCEEEEEEECcCCcCCCcEEeEEEEEEEECC-CCcceEE-ecCCc--------CEEEEcCCCCCCEEEEEEEEEcCC
Confidence            35677999999984    4678999999999875 4445443 22222        689999999999999999999999


Q ss_pred             CCCCCCcceEEecCC
Q psy12131        228 GWSRPSKAYVFATEG  242 (245)
Q Consensus       228 G~~~~s~~~~~~t~~  242 (245)
                      |.|.+|..+.++|.+
T Consensus       109 G~g~~S~~~~~~T~e  123 (124)
T 2ed9_A          109 GTGPPSNWYTAETPE  123 (124)
T ss_dssp             CBCCCCCCEEEECCC
T ss_pred             ccCCCCCCEEEECCC
Confidence            999999999999975

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.31  E-value=2.3e-11  Score=78.07  Aligned_cols=84  Identities=14%  Similarity=0.122  Sum_probs=62.0

Q ss_pred             eEEecCCCeEEEEEEEeecC--CCeEEEEECCEEecc-----CCcEEEEec---CceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         58 WIHTAPDMRAEIICNVYANP--PAKVEWFRDGTAITL-----GGRIDMHVS---SEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~~~~~~~-----~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .+.+.+|+.+.|.|.+.|.|  .+.+.|++++..+..     .........   ...+.|.|.++..+|.|.|+|.|.|.
T Consensus        17 ~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~   96 (122)
T 3s35_X           17 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSG   96 (122)
T ss_dssp             CEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECS
T ss_pred             CEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccC
Confidence            45677899999999999844  468999998763321     111111111   13457999999999999999999999


Q ss_pred             CceeEEEEEEEecC
Q psy12131        128 LGSSQQFIQLSGIP  141 (245)
Q Consensus       128 ~g~~~~~~~~~~~~  141 (245)
                      .|.....+.|.+..
T Consensus        97 ~g~~~~~~~l~V~~  110 (122)
T 3s35_X           97 LMTKKNSTFVRVHE  110 (122)
T ss_dssp             SCEEEEEEEEEEEE
T ss_pred             CCceEEEEEEEEec
Confidence            99888887777653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	245
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	8e-13
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	1e-04
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	4e-12
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	4e-10
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	6e-10
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	9e-04
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	5e-09
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-08
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	2e-08
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-08
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	0.004
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-08
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	3e-08
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	4e-08
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	0.003
d1ujta_	120	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	7e-08
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	7e-08
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	7e-08
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	9e-08
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	6e-04
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-07
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	0.004
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-07
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	8e-07
d1uena_	125	b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens	8e-07
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	1e-06
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	1e-06
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	1e-06
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	1e-06
d1x5ka1	111	b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [	1e-06
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-06
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	2e-06
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	2e-06
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	7e-06
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	8e-06
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	9e-06
d1va9a1	109	b.1.2.1 (A:8-116) Down syndrome cell adhesion mole	1e-05
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	1e-05
d2dn7a1	94	b.1.2.1 (A:8-101) Receptor-type tyrosine-protein p	1e-05
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	2e-05
d1fnaa_	91	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	2e-05
d1x5la1	98	b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human	3e-05
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-05
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-04
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	4e-05
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	4e-05
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	6e-05
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	6e-05
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	6e-05
d1x4ya1	101	b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {	6e-05
d2dtge2	196	b.1.2.1 (E:593-807) Insulin receptor {Human (Homo	6e-05
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	6e-05
d1fnfa3	89	b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 m	7e-05
d1x5xa1	96	b.1.2.1 (A:8-103) Fibronectin type-III domain cont	8e-05
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	8e-05
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	1e-04
d2ic2a1	107	b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit	1e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-04
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	1e-04
d2djsa1	95	b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human	1e-04
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	2e-04
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-04
d1x5fa1	107	b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [	2e-04
d2cuma1	93	b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens)	2e-04
d1wisa1	111	b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens)	3e-04
d1tdqa2	92	b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicu	3e-04
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	3e-04
d1owwa_	93	b.1.2.1 (A:) Fibronectin, different Fn3 modules {H	3e-04
d1wfna1	106	b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens)	3e-04
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	3e-04
d1x5ja1	100	b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [	4e-04
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	5e-04
d1wfta_	123	b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus	6e-04
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	0.001
d1qg3a1	92	b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Hum	0.002
d1wk0a_	137	b.1.2.1 (A:) Fibronectin type-III domain containin	0.002
d1cfba2	105	b.1.2.1 (A:710-814) Neuroglian, two amino proximal	0.002
d1x5ga1	103	b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [	0.002
d1tdqa1	93	b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus)	0.002
d1x5ha1	119	b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [	0.002
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.003
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	0.003
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	0.003
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	0.004
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	0.004
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	0.004

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 8e-13
 Identities = 18/99 (18%), Positives = 30/99 (30%), Gaps = 2/99 (2%)

Query: 50  PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLV 109
           P++    +          E+   V    P    W +    I     + +  S     L +
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 110 RHIKDTDFGNYMCQASNNLGSSQQFIQLS--GIPNIPVF 146
              +    G Y     N LGS Q  + L+    P+ P  
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPAG 99

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 4  IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 51
          +E   N   L +     +  G Y  +  N +G   +    + V+  P+
Sbjct: 49 VENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA-QVNLTVVDKPD 95

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 4e-12
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 1/86 (1%)

Query: 54  VEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLV-RHI 112
           +EK+          +  C    NP   + W ++G       RI  +    +H  L+   +
Sbjct: 10  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV 69

Query: 113 KDTDFGNYMCQASNNLGSSQQFIQLS 138
             +D GNY C   N  GS      L 
Sbjct: 70  VPSDKGNYTCVVENEYGSINHTYHLD 95

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.3 bits (127), Expect = 4e-10
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 45  NVIYPPEVSVEKQWIHTAPDM--RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS 102
           NV  PP V   +  ++   ++     ++C+    P   + W +DG  I      D     
Sbjct: 1   NV--PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIF 58

Query: 103 EKHS--LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
              S  L +R++   D   Y+C A N  G     I L 
Sbjct: 59  SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 96

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.0 bits (126), Expect = 6e-10
 Identities = 19/89 (21%), Positives = 35/89 (39%)

Query: 50  PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLV 109
           P   V+           A   C V A+ P  V W +D   +    +     +   + L +
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 110 RHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
             +K  D G Y  +A N+ G+ ++ + L+
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLN 90

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.6 bits (81), Expect = 9e-04
 Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 9  NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 51
          N   L ++RV     G Y   A N+ G        +NV    E
Sbjct: 55 NDYGLTINRVKGDDKGEYTVRAKNSYGTKEE-IVFLNVTRHSE 96

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.2 bits (119), Expect = 5e-09
 Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 7/92 (7%)

Query: 48  YPPEVSVEK-QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS 106
           Y P +  +     +        + C  + NP  +++W +   + T          S +  
Sbjct: 3   YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQT------SKWLSSEPL 56

Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
           L ++++   D G Y C+A N  G      ++ 
Sbjct: 57  LHIQNVDFEDEGTYECEAENIKGRDTYQGRII 88

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 2e-08
 Identities = 16/73 (21%), Positives = 29/73 (39%)

Query: 66  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
            A   C+    P   V W R G  ++   R  +  +  K +  +  ++ +D GNY     
Sbjct: 16  SARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE 75

Query: 126 NNLGSSQQFIQLS 138
           N+ G  +    L+
Sbjct: 76  NSEGKQEAEFTLT 88

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 2e-08
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 10/105 (9%)

Query: 46  VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH 105
           V + P ++  +       D    I   V  NP   ++WF +G  +     I   +    H
Sbjct: 1   VHFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57

Query: 106 -----SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS--GIPNI 143
                 L + +    + G+Y   A N  G  ++ I     G P I
Sbjct: 58  TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 2e-08
 Identities = 14/104 (13%), Positives = 28/104 (26%)

Query: 35  GESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG 94
           G     +  ++    P V  +K                      +    F         G
Sbjct: 24  GNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEG 83

Query: 95  RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
           R+ +  + ++    V   +  D G Y     N +G  Q  + + 
Sbjct: 84  RVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 127

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 0.004
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 4   IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 47
           +E   +R    ++    +  G+Y     N +G     N  V VI
Sbjct: 87  VETTKDRSIFTVEGAEKEDEGVYTVTVKNPVG-EDQVNLTVKVI 129

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 3e-08
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 1/91 (1%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
            P++    Q         A     V   P  + EW+++G  I    RI  +   +    L
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 109 V-RHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
           V R +   D  + M +A N  G +     L 
Sbjct: 64  VIRDVTGEDSASIMVKAINIAGETSSHAFLL 94

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 3e-08
 Identities = 14/104 (13%), Positives = 25/104 (24%), Gaps = 8/104 (7%)

Query: 48  YPPEVSVEKQWIHTAPDMRAEIICNVYANPPA---KVEWFRDGTAITLGGRIDMHVSSEK 104
            P  V +           +  + C V    P     V   R    +     +        
Sbjct: 3   TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVT- 61

Query: 105 HSLLVRHIKDTDFGNYMCQASNNLGS--SQQFIQLSGIPNIPVF 146
               V   +D     + C+   +L     + F   S    +  F
Sbjct: 62  --TTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQLQTF 103

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.4 bits (112), Expect = 4e-08
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 49  PPEVSVEKQWIHTAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSL 107
            P+   + + +          I C V   P   V W  +   ++ G             L
Sbjct: 2   APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTD-----SGL 56

Query: 108 LVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
           +++ +K+ D G Y C+A+N  G       + 
Sbjct: 57  VIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 87

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 34.0 bits (77), Expect = 0.003
 Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 13 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
          L +  V     G Y C A+N  G+      +V V
Sbjct: 56 LVIKGVKNGDKGYYGCRATNEHGDKYF-ETLVQV 88

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 7e-08
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 4/112 (3%)

Query: 129 GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRN 188
           GSS + +Q   + ++ V   +   L P   ++ W VD     IQ       +       +
Sbjct: 4   GSSGRQVQ-KELGDVLVRLHNPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATS 62

Query: 189 IVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFAT 240
                D   A     +S  +  L+    YE  V           S++    T
Sbjct: 63  SWQNLD---AKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRT 111

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 7e-08
 Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKV-------EWFRDGTAITLGGRIDMHVS 101
           PP V   K   H      A ++C   + PP          +            R  +  S
Sbjct: 2   PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 102 SEKHSLLVRHIKDTDF-GNYMCQASNNLGSSQQFIQL 137
             +  L + ++      G Y C  +++ GS Q  I L
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 98

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.9 bits (110), Expect = 7e-08
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 7/92 (7%)

Query: 49  PPEVSVEKQWIHTAPD-MRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHS 106
           P  V+VE+Q   +         IC   +  PA  + W R          +D +       
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN-----GI 55

Query: 107 LLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
           L +R+++ +D G Y+C  SN     Q    L 
Sbjct: 56  LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 9e-08
 Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 13/98 (13%)

Query: 49  PPEVSV-EKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHV------- 100
           P  V +     +H        I  +V   P   + W  +G+ +     I           
Sbjct: 4   PASVQLHTAVEMH-----HWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANE 58

Query: 101 SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
           +     L +      + GNY   A+N  G +   I  +
Sbjct: 59  TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAA 96

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 6e-04
 Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 12  SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
            L L++ T    G Y  +A+N  G++++ + +   +  P
Sbjct: 64  CLRLNQPTHVNNGNYTLLAANPFGQASA-SIMAAFMDNP 101

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 45.8 bits (107), Expect = 2e-07
 Identities = 11/84 (13%), Positives = 28/84 (33%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
            P +  +   +    +    + C +  N       ++           +  +  ++ SL+
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 61

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQ 132
               + +D G+Y C A    G + 
Sbjct: 62  FLRPQASDEGHYQCFAETPAGVAS 85

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 33.5 bits (75), Expect = 0.004
 Identities = 10/39 (25%), Positives = 14/39 (35%)

Query: 8  YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
           +  SL   R      G YQC A    G ++S+      
Sbjct: 55 KDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRK 93

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 2e-07
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 13/85 (15%)

Query: 67  AEIICNVYANPPAKVEWFRDGTAI-------------TLGGRIDMHVSSEKHSLLVRHIK 113
            E +C VY++    ++W +                   L          E   L +R++ 
Sbjct: 23  VEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 82

Query: 114 DTDFGNYMCQASNNLGSSQQFIQLS 138
             D G Y C A N++G S     L+
Sbjct: 83  FEDAGEYTCLAGNSIGISFHSAWLT 107

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 8e-07
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 9/93 (9%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSE---- 103
           PP               RA + C+ +  +PP++  WF+DG ++                 
Sbjct: 2   PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61

Query: 104 ----KHSLLVRHIKDTDFGNYMCQASNNLGSSQ 132
                  L+   +   D G Y CQA N  G++ 
Sbjct: 62  IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAM 94

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 8e-07
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 3/105 (2%)

Query: 139 GIPNIPVFQKSSRRLGPDGYRLVWQ---VDTYSGIIQYLLKFREREELTPWRNIVIPSDG 195
            +P +         +      + W    + +  G +Q    +  + + +  RN       
Sbjct: 12  DLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKK 71

Query: 196 SLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFAT 240
            L          + GL+ F+ Y  +V   N  G    S   VF T
Sbjct: 72  ILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNT 116

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 1e-06
 Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 7/105 (6%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNV---YANPPAKVEWFRDGTAITLGGRIDMHVSSEKH 105
           P +V +  Q    A      I C V          +  FR    +          + ++ 
Sbjct: 2   PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEA 61

Query: 106 S--LLVRHIKDTDFGNYMCQASNNLGSS--QQFIQLSGIPNIPVF 146
           +        ++    N+ C A  +L S     F + S    + ++
Sbjct: 62  TATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIY 106

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 1e-06
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 46  VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG----GRIDMHVS 101
           V YPP V   ++       +   I   V  NPP  + W  +G  +               
Sbjct: 2   VYYPPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGE 58

Query: 102 SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
             +  LL       + GNY   A N LG++ Q I  
Sbjct: 59  ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING 94

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 1e-06
 Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 4/84 (4%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPP-AKVEWFRDGTAITLGGRIDMHVSSEKHSL 107
            P   V +  + + P     + C        A V W     A           +     L
Sbjct: 6   CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAG---SHPSRWAGMGRRL 62

Query: 108 LVRHIKDTDFGNYMCQASNNLGSS 131
           L+R ++  D GNY C  +     +
Sbjct: 63  LLRSVQLHDSGNYSCYRAGRPAGT 86

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 1e-06
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 153 LGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQ 212
           +     RL+WQ       I    +   R   T      +            + Y  TGL+
Sbjct: 32  VRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVL-----APSARQYTATGLK 86

Query: 213 LFTQYEASVLAKNRFGWSRPSKAYVFATE 241
             + Y   + A+ R GW   ++A V  TE
Sbjct: 87  PESVYLFRITAQTRKGWGEAAEALVVTTE 115

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 1e-06
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 8/97 (8%)

Query: 149 SSRRLGPDGYRLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSY 206
            S+   P    + WQ   +    I  Y++ +           ++ P  G+        ++
Sbjct: 21  VSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGN------RLTH 74

Query: 207 NITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA 243
            I  L L T Y   + A+N  G    S+A  F T  A
Sbjct: 75  QIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKA 111

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 43.3 bits (101), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 1/91 (1%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
            P  +     +       A   C V   P  +V WF+D   +       +    E +  L
Sbjct: 8   KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSL 67

Query: 109 V-RHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
               +   D   Y C+A N+LG +    +L 
Sbjct: 68  TISEVCGDDDAKYTCKAVNSLGEATCTAELL 98

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.0 bits (100), Expect = 2e-06
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 48  YPPEVSVEKQ---WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEK 104
           Y P    +     +   + + +  + C   ANPPA   W  +GT + +G      +    
Sbjct: 3   YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV-AG 61

Query: 105 HSLLVRHIKDTDFGNYMCQASNNLGS 130
             ++   +K  D G+Y C A+N  G+
Sbjct: 62  DLVISNPVKAKDAGSYQCVATNARGT 87

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 2e-06
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 66  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE--KHSLLVRHIKDTDFGNYMCQ 123
           R E+ C V +   A V+WF++G  I  G +    +  E  KH L++      D   Y   
Sbjct: 17  RVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVM 75

Query: 124 ASNNLGSSQQFIQL 137
            +    S++  + L
Sbjct: 76  TTGGQSSAKLSVDL 89

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 2e-06
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKH-- 105
           PP               RA + C+    +PP++  WF+DG  +    +     S+  +  
Sbjct: 2   PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61

Query: 106 -----SLLVRHIKDTDFGNYMCQASNNLGSSQ 132
                 L+   +  +D G Y C+A N  G+  
Sbjct: 62  NPTTGELVFDPLSASDTGEYSCEARNGYGTPM 93

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.5 bits (96), Expect = 7e-06
 Identities = 15/89 (16%), Positives = 28/89 (31%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
            P++    + I         +  +    P     W    +   L   + +   S   S+ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
               K  D GNY  +  N LG  +   ++
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEV 90

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 8e-06
 Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 1/79 (1%)

Query: 67  AEIICNVYANPP-AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
               C +  N     + W++D +   +       +   K  L     K  D G+Y C   
Sbjct: 20  DVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVR 79

Query: 126 NNLGSSQQFIQLSGIPNIP 144
           N+    +  I    + N P
Sbjct: 80  NSSYCLRIKISAKFVENEP 98

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.1 bits (95), Expect = 9e-06
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 66  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
            A I+C+V ++ P  + W   G  +    +    +    + L +R IK TD G Y C+  
Sbjct: 18  DAVIVCDVVSSLPPTIIWKHKGRDVI-LKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGR 76

Query: 126 NNLGSSQQFIQL 137
                   F  +
Sbjct: 77  ILARGEINFKDI 88

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 1e-05
 Identities = 16/102 (15%), Positives = 32/102 (31%)

Query: 139 GIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLA 198
             P+ P    + + +     ++ W+          +  ++         +    S   + 
Sbjct: 6   AAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMK 65

Query: 199 GPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFAT 240
               ++ Y +  L+ F QY   V A NR G    S      T
Sbjct: 66  ATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATT 107

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 1e-05
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 13/102 (12%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI------------ 96
           P  VS   + +      + ++ICNV         W  +G+ I     +            
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 97  DMHVSSEKHSLLVRHIKDTDFG-NYMCQASNNLGSSQQFIQL 137
           +   S+    L +  I+   +   + C A N  G    +IQL
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 103

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (94), Expect = 1e-05
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 11/84 (13%)

Query: 160 LVWQVDTYSG--IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY 217
           L W         ++ Y L++   +E  P                  Q + +TGL   T Y
Sbjct: 18  LQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKD---------DQHFTVTGLHKGTTY 68

Query: 218 EASVLAKNRFGWSRPSKAYVFATE 241
              + AKNR G     +  +   E
Sbjct: 69  IFRLAAKNRAGLGEEFEKEIRTPE 92

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 2e-05
 Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 1/90 (1%)

Query: 49  PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLL 108
            P + V+             + C V      +  W       +        + S   +L 
Sbjct: 2   VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLA 61

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
                D +  N  C A N++G ++  +Q++
Sbjct: 62  -NVTSDLNRKNVTCWAENDVGRAEVSVQVN 90

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 2e-05
 Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 9/86 (10%)

Query: 155 PDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214
           P    + W       +  Y + + E    +P +   +P            +  I+GL+  
Sbjct: 10  PTSLLISWD-APAVTVRYYRITYGETGGNSPVQEFTVPGS--------KSTATISGLKPG 60

Query: 215 TQYEASVLAKNRFGWSRPSKAYVFAT 240
             Y  +V A    G S  S   +   
Sbjct: 61  VDYTITVYAVTGRGDSPASSKPISIN 86

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 3e-05
 Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 9/99 (9%)

Query: 144 PVFQKSSRRLGPDGYRLVWQVDTYS-GIIQYLLKFREREELTPWRNIVIPSDGSLAGPIY 202
            V      R G     L+WQ      GII         ++        + +         
Sbjct: 6   QVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAV-------- 57

Query: 203 TQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
           T    ++GL+  T+Y   V A+   G  R S+A    T 
Sbjct: 58  TTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETG 96

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 3e-05
 Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 66  RAEIICNVYANPPAKVEWFRDGTAIT--LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 123
             ++ C+V       ++W +DG  +       I +        L ++ ++ +D G Y CQ
Sbjct: 13  PVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQ 72

Query: 124 ASNNLGSS 131
             +   + 
Sbjct: 73  VEDGGETE 80

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 2e-04
 Identities = 8/32 (25%), Positives = 11/32 (34%)

Query: 15 LDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 46
          L  V    AG Y C   +      S+   + V
Sbjct: 58 LKSVERSDAGRYWCQVEDGGETEISQPVWLTV 89

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.1 bits (90), Expect = 4e-05
 Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 4/89 (4%)

Query: 50  PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLV 109
           P+                   C     P   V W RDG  +         +      L  
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLAS----QNRIEVSGGELRF 57

Query: 110 RHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
             +   D G Y C A N  G+     +L+
Sbjct: 58  SKLVLEDSGMYQCVAENKHGTVYASAELT 86

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 4e-05
 Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 66  RAEIICNVYANPPAKVEWFRDG-TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 124
           +  +   + A+  A+V+W ++G      G +        K +L +      D   Y C  
Sbjct: 23  KIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV 81

Query: 125 SNNLGSSQQFIQ 136
                S++ F++
Sbjct: 82  GGEKCSTELFVK 93

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.3 bits (90), Expect = 6e-05
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 7/102 (6%)

Query: 48  YPPEVSVE-KQWIHTAPDMRAEIICNVYANPP-AKVEWFRDGTAITLGGRIDMHVSSEKH 105
           +  E S E +  +           C+   + P     W  +     +       VS    
Sbjct: 2   FLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG 61

Query: 106 SLLVRHIKDTDFGNYMCQASNNLGSSQ-----QFIQLSGIPN 142
           +L +   + +D GNY C A++++         +F QLS    
Sbjct: 62  NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE 103

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 6e-05
 Identities = 13/43 (30%), Positives = 22/43 (51%)

Query: 8  YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
           N   L +D +  + AG YQC  SN +    S +  +++I+ P
Sbjct: 53 QNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 95

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 6e-05
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 11/108 (10%)

Query: 133 QFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIP 192
           Q I  +G+P  P+  K+          L W       I  Y L +++ E     R  + P
Sbjct: 3   QVITQTGVPGQPLNFKAEP-ESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEP 61

Query: 193 SDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFAT 240
                       SY + GL+  + Y   + A++  G    +      T
Sbjct: 62  ----------GTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISART 99

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 6e-05
 Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 6/84 (7%)

Query: 158 YRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY 217
           +  +   +  + I  + + +R  +            +G          ++I+ LQ  T Y
Sbjct: 22  WMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGD------RYWHSISHLQPETSY 75

Query: 218 EASVLAKNRFGWSRPSKAYVFATE 241
           +  +   N  G S  S   +  T+
Sbjct: 76  DIKMQCFNEGGESEFSNVMICETK 99

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 196

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 6e-05
 Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 8/100 (8%)

Query: 141 PNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGP 200
               + + S R+   D    V  V   S   + L            R             
Sbjct: 100 ILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKV-------- 151

Query: 201 IYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFAT 240
           +  +S  I+GL+ FT Y   + A N+           + +
Sbjct: 152 VNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVS 191

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 6e-05
 Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 9/103 (8%)

Query: 44  VNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWF-------RDGTAITLGGRI 96
           + V  PP +S  +   H     + +I C + + PP     +         GT+       
Sbjct: 2   LTVNGPPIISSTQT-QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET 60

Query: 97  DMHVSSEKHSLLVRHI-KDTDFGNYMCQASNNLGSSQQFIQLS 138
                    +L + +I +      Y C A N+ GS  + I+L 
Sbjct: 61  ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 103

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 7e-05
 Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 9/80 (11%)

Query: 153 LGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQ 212
           +  + + + W     + I  Y ++          R   +P            S  +T L 
Sbjct: 12  ITANSFTVHWIAPR-ATITGYRIRHHPEHFSGRPREDRVPHS--------RNSITLTNLT 62

Query: 213 LFTQYEASVLAKNRFGWSRP 232
             T+Y  S++A N    S  
Sbjct: 63  PGTEYVVSIVALNGREESPL 82

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 8e-05
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 205 SYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFAT 240
           +Y +  L+  T+Y+  V+A N  G S PS+   F T
Sbjct: 58  AYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTT 93

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 8e-05
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 8/83 (9%)

Query: 153 LGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQ 212
           +GPD  R+ W       +  +L+++   +       + I             +  +T L 
Sbjct: 12  IGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPS--------DNAVVLTNLL 63

Query: 213 LFTQYEASVLAKNRFGWSRPSKA 235
             T+Y  SV +      S P + 
Sbjct: 64  PGTEYVVSVSSVYEQHESTPLRG 86

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 12/97 (12%)

Query: 48  YPPEVSVEKQWIHTAPDMRAEIICNVYA------NPPAKVEWFRDGTAITLGGRIDMHVS 101
           Y  +    KQ +  A D    ++C          N   K++W++D   + L      H S
Sbjct: 1   YNAQAIF-KQKLPVAGD--GGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI---HFS 54

Query: 102 SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
             K  L+V ++ +   GNY C AS      Q  I   
Sbjct: 55  GVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRV 91

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 6/90 (6%)

Query: 152 RLGPDGYRLVWQVDTYSG------IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQS 205
           RL  +   L W V    G       +QY +  + +   T   NI        +    + +
Sbjct: 10  RLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFT 69

Query: 206 YNITGLQLFTQYEASVLAKNRFGWSRPSKA 235
            ++T L+    Y   +LA      ++ S  
Sbjct: 70  ASVTDLKPQHTYRFRILAVYSNNDNKESNT 99

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 1e-04
 Identities = 17/103 (16%), Positives = 26/103 (25%), Gaps = 13/103 (12%)

Query: 49  PPEVSVEK-QWIHTAPDMRAEIICNVYANPPAK---VEWFRD---------GTAITLGGR 95
           P  + V + Q               V      K   V+WF+          G  + L   
Sbjct: 3   PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62

Query: 96  IDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
            D         L +   +    G Y C+ S           L+
Sbjct: 63  YDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLT 105

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 11/109 (10%)

Query: 129 GSSQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQ--VDTYSGIIQYLLKFREREELTPW 186
           GSS +   LS +P  P   + +  +  +   L WQ           Y+++   +     W
Sbjct: 4   GSSGKNYDLSDLPGPPSKPQVTD-VTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSW 62

Query: 187 RNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKA 235
           + +        A  + T  Y + GL+  T Y   V A N  G S PS  
Sbjct: 63  QTV--------ANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPM 103

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 1e-04
 Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 14/104 (13%)

Query: 138 SGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSG-IIQYLLKFREREELTPWRNIVIPSDGS 196
           S +P +     + R +      L W        II         +E   + + +  S   
Sbjct: 2   STVPIMHQVSATMRSI-----TLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQ-- 54

Query: 197 LAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFAT 240
                 T +  I GL+    Y   V A+   G+ + S    F T
Sbjct: 55  ------TNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQT 92

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 12/114 (10%)

Query: 131 SQQFIQLSGIPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRN 188
           ++ F  LS  P+IP   + + R   +   L W+   D  S I  ++L++ E +    +  
Sbjct: 1   AEIFTTLSCEPDIPNPPRIANR-TKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQ 59

Query: 189 IVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEG 242
                          + + IT L      +  + A+N +G S  S+  ++ T G
Sbjct: 60  CY---------MGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSG 104

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 2e-04
 Identities = 12/70 (17%), Positives = 15/70 (21%), Gaps = 3/70 (4%)

Query: 66  RAEIICNVYANPPAKVEWFRDGTA---ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 122
            A   C+      A    +  G       L             S  V +    D G Y C
Sbjct: 18  FATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRC 77

Query: 123 QASNNLGSSQ 132
                 G   
Sbjct: 78  MIRTEGGVGI 87

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 9/89 (10%)

Query: 58  WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRID---------MHVSSEKHSLL 108
            I    +     +    +     V  +R+G         +           +   K +L 
Sbjct: 25  RISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALR 84

Query: 109 VRHIKDTDFGNYMCQASNNLGSSQQFIQL 137
           +++++ +D G Y C   ++    +  ++L
Sbjct: 85  IQNVRFSDEGGYTCFFRDHSYQEEAAVEL 113

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 8/80 (10%)

Query: 162 WQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASV 221
              D +   + Y + + +                            I  L   T Y   V
Sbjct: 34  PASDPHGDNLTYSVFYTKEGIARERVENTSHPG--------EMQVTIQNLMPATVYIFRV 85

Query: 222 LAKNRFGWSRPSKAYVFATE 241
           +A+N+ G    S      T+
Sbjct: 86  MAQNKHGSGESSAPLRVETQ 105

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 2e-04
 Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 1/45 (2%)

Query: 200 PIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGAE 244
           P    S+ + GL   T Y A + A        P     F T G  
Sbjct: 49  PGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVST-SFTTGGLR 92

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 3e-04
 Identities = 10/36 (27%), Positives = 14/36 (38%)

Query: 200 PIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKA 235
               +S  +  L  FT Y   +   N  G S PS+ 
Sbjct: 68  EPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQP 103

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.8 bits (84), Expect = 3e-04
 Identities = 15/88 (17%), Positives = 24/88 (27%), Gaps = 8/88 (9%)

Query: 154 GPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQL 213
                 L W     +   +Y + +           +V    G       T    +T L  
Sbjct: 13  TATSLDLEWDNSE-AEAQEYKVVYSTLAGEQYHEVLVPKGIGP------TTKTTLTDLVP 65

Query: 214 FTQYEASVLAKNRFGWSRPSKAYVFATE 241
            T+Y   + A      S P+      TE
Sbjct: 66  GTEYGVGISAVMNSKQSIPATM-NARTE 92

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (85), Expect = 3e-04
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 154 GPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGL 211
                 + W    +    I  + +++++ +++  W         S        S  ITGL
Sbjct: 23  SETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPS------RLSVEITGL 76

Query: 212 QLFTQYEASVLAKNRFGWSRPSKA 235
           +    Y+  V A N  G S PS  
Sbjct: 77  EKGISYKFRVRALNMLGESEPSAP 100

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 3e-04
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 155 PDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF 214
           P+ + + W     S I +Y+L++R +  +  W+   IP            SY I GL+  
Sbjct: 15  PNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGH--------LNSYTIKGLKPG 66

Query: 215 TQYEASVLAKNRFGWSRPSKAYVFAT 240
             YE  +++  ++G    ++   F T
Sbjct: 67  VVYEGQLISIQQYGHQEVTRF-DFTT 91

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 3e-04
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 10/90 (11%)

Query: 153 LGPDGYRLVWQ--VDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITG 210
           +     ++ WQ   +    +  Y + + E           +P+         T  Y +TG
Sbjct: 22  ILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNV--------TLEYRVTG 73

Query: 211 LQLFTQYEASVLAKNRFGWSRPSKAYVFAT 240
           L   T Y   V A    G  + S + + + 
Sbjct: 74  LTALTTYTIEVAAMTSKGQGQVSASTISSG 103

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 36.8 bits (84), Expect = 3e-04
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 67  AEIICNVYANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYMCQA 124
             I C   +NP     +F++G  +       +  H  +    LL +     D G Y C+ 
Sbjct: 21  TMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEV 80

Query: 125 SNNLGSSQ 132
            N +G  Q
Sbjct: 81  DNGVGKPQ 88

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 4e-04
 Identities = 14/42 (33%), Positives = 17/42 (40%)

Query: 200 PIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
              T SY +TGL+  T YE SV+       S  S      T 
Sbjct: 57  NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTF 98

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 5e-04
 Identities = 10/93 (10%), Positives = 28/93 (30%), Gaps = 15/93 (16%)

Query: 48  YPPEVSVEK--QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH 105
           Y P +             + +   +C  + NP  +++  +               +    
Sbjct: 1   YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK-------------DGTFPLP 47

Query: 106 SLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
                 +     G Y+C+A +  G   + + ++
Sbjct: 48  IGESVTVTRDLEGTYLCRARSTQGEVTREVTVN 80

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (83), Expect = 6e-04
 Identities = 11/110 (10%), Positives = 22/110 (20%), Gaps = 10/110 (9%)

Query: 139 GIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLA 198
           G P+     K+   +                I++Y      R          +       
Sbjct: 9   GAPSTVRISKNVDGIHL---SWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYC 65

Query: 199 GPIY-------TQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
           G            +               + AKN  G+   ++       
Sbjct: 66  GLKTSCTVTAGQLANAHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQGN 115

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 18/107 (16%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 35  GESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG 94
           GE+        +    +  ++ +W+ +  D +      +  +     +   D     L G
Sbjct: 19  GETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSG----DKIYDDYYPDLKG 74

Query: 95  RIDMH---VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
           R+      + S   S+ V +++ +D G Y C+     G + + I L 
Sbjct: 75  RVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLV 121

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.002
 Identities = 15/89 (16%), Positives = 21/89 (23%), Gaps = 10/89 (11%)

Query: 153 LGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQ 212
            G       W     SG           +  +     ++ S           S  +T L 
Sbjct: 13  AGSRKIHFNW--LPPSGKPMGYRVKYWIQGDSESEAHLLDSK--------VPSVELTNLY 62

Query: 213 LFTQYEASVLAKNRFGWSRPSKAYVFATE 241
            +  YE  V A    G    S      T 
Sbjct: 63  PYCDYEMKVCAYGAQGEGPYSSLVSCRTH 91

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 170 IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW 229
           +  Y +      +   ++++ +  +          +  +  L+    Y A V A+     
Sbjct: 57  LYGYEVLISSTGKDGKYKSVYVGEE---------TNITLNDLKPAMDYHAKVQAEYNSIK 107

Query: 230 SRPSKAYVFATEGAE 244
             PS+A +F T   E
Sbjct: 108 GTPSEAEIFTTLSCE 122

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 10/43 (23%), Positives = 14/43 (32%)

Query: 200 PIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEG 242
                +  I     F +Y   V+A N  G S  +   V    G
Sbjct: 60  DWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSG 102

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 202 YTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFAT 240
            + SY I GL+ +T+Y   V+A N+ G    +      T
Sbjct: 62  SSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRT 100

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.5 bits (78), Expect = 0.002
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 200 PIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATE 241
                 Y++  L+  ++YE S+ A      S  S    F TE
Sbjct: 53  QPPLSQYSVQALRPGSRYEVSISAVRGTNESDASST-QFTTE 93

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (79), Expect = 0.002
 Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 4/108 (3%)

Query: 137 LSGIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGS 196
           LS +P+      S          + WQ    +     +  ++ R      ++ V  +   
Sbjct: 7   LSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLV- 65

Query: 197 LAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEGAE 244
                   S  I GL   T+Y   V A    G    +      T  ++
Sbjct: 66  ---SGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESD 110

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.003
 Identities = 7/66 (10%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 67  AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 126
            E++           E            +  +++ +   SL + ++  +D   Y  ++ N
Sbjct: 24  KEVLW--KKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN 81

Query: 127 NLGSSQ 132
              + +
Sbjct: 82  ITDTMK 87

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (76), Expect = 0.003
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 13 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 50
          + +   T++ +G Y C       +  S+   + VI  P
Sbjct: 51 ISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 88

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 8/46 (17%), Positives = 13/46 (28%)

Query: 93  GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
               + H       + +   KD   GNY C+ +           L 
Sbjct: 56  KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 101

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 33.6 bits (76), Expect = 0.004
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 66  RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 125
            A     + + P    +W   G  +T     ++    +KH L++ + +    G    QA+
Sbjct: 18  TAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAA 76

Query: 126 NNLGSSQQFIQ 136
           N   ++   ++
Sbjct: 77  NAKSAANLKVK 87

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (76), Expect = 0.004
 Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 4/49 (8%)

Query: 200 PIYTQSYNITGLQLFTQYEASVLAKNRFG---WSRPSKAYVFATEGAET 245
                   I       ++   + A+  FG   WS  S      T   E+
Sbjct: 57  KDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPE-AMGTPWTES 104

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.5 bits (75), Expect = 0.004
 Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 8/97 (8%)

Query: 50  PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMH--------VS 101
             V   +  +    +   ++ C        +VEW     + T     +          V+
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 102 SEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 138
                +    +   D G Y C  S   G +   + + 
Sbjct: 62  FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.75
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.74
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.73
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.73
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.72
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.67
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.66
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.64
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.63
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.61
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.6
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.59
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.58
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.58
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.57
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.57
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.55
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.55
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.55
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.54
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.54
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.53
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.53
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.52
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.52
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.51
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.51
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.5
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.5
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.49
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.49
d2avga1	110	Cardiac myosin binding protein C, different domain	99.48
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.47
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.47
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.46
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.46
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.46
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.45
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.44
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	99.44
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.44
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.43
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.43
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.43
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.42
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.42
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.42
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.42
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.41
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	99.41
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.41
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.41
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.4
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.4
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.4
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.4
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.4
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.39
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.39
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.38
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.38
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.38
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	99.38
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.37
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.37
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.37
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.37
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	99.36
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.36
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.35
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.35
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.35
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.35
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.34
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	99.33
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.33
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	99.32
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.32
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.32
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	99.31
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.31
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	99.3
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	99.3
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	99.28
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.27
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	99.27
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.27
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.26
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	99.25
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.25
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.24
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.24
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	99.23
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	99.21
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.2
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	99.2
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	99.19
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	99.18
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	99.17
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.16
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	99.16
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	99.15
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	99.15
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.14
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	99.13
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.12
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.11
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.11
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.09
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.07
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	99.07
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	99.07
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	99.05
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.04
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.04
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	99.04
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.03
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.03
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	99.03
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	99.03
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.02
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	99.02
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	98.99
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.99
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.98
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.97
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	98.93
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	98.93
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.91
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.89
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.87
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	98.85
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.79
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.78
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.77
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.75
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.75
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.74
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.68
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.67
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	98.67
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.67
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	98.67
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.66
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.66
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.66
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.63
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.6
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.59
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.59
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.59
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.59
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.58
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.58
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.57
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.57
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.57
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.55
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.55
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.55
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.55
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.55
d2avga1	110	Cardiac myosin binding protein C, different domain	98.54
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.54
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.53
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.53
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.52
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.51
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.51
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.5
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.5
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.5
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.49
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.49
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.49
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.49
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.48
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.48
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.48
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	98.47
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.47
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.46
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.46
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.45
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.45
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.45
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.45
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.44
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.43
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.43
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.42
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.42
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	98.42
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.41
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.4
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.39
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.38
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.38
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.37
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.36
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.36
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.35
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.35
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.35
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	98.34
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.34
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.32
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.31
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.31
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.31
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.31
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.3
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.3
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.3
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.28
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.27
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.27
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.27
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.27
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.26
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.26
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.25
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.24
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.23
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.23
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.23
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.23
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.23
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.22
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.22
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.21
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.21
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.2
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.19
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.19
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.19
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.18
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.17
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.17
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.16
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.15
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.15
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.14
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.14
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.13
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.13
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.12
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.12
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.11
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.1
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.1
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.09
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.08
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.08
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.08
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.08
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.08
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.07
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.07
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.05
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.05
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.05
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.05
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.0
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.0
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.99
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.99
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.99
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.97
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.97
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.96
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.96
d1pd6a_	94	Cardiac myosin binding protein C, different domain	97.95
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.93
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	97.93
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.93
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.92
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.9
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.9
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	97.89
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.89
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.88
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.84
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	97.84
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.84
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.83
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	97.82
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	97.82
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.81
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.81
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.8
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.8
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.78
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	97.78
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.77
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.77
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.76
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.76
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.75
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.75
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.74
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.71
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.7
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.69
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.69
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.69
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.68
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.66
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.65
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.61
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.61
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	97.59
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.59
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.58
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.57
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.56
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.53
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.52
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.51
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.5
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.49
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	97.49
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.49
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.44
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.42
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.42
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.41
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.41
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.4
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.4
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.39
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.39
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.37
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.35
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.35
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.34
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.34
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.33
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.32
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.32
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.31
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.3
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.3
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.3
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.29
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.29
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.26
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.26
d2qfra1	112	Purple acid phosphatase, N-terminal domain {Kidney	97.26
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.26
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.26
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.23
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.23
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.23
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.22
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.22
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.22
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.22
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.21
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.21
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.2
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.19
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.18
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.17
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.17
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.16
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.15
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	97.14
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.14
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.13
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.12
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.11
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.11
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.1
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.1
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.09
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.09
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.08
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.05
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.04
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.04
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.01
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.01
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.0
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	96.98
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.95
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	96.95
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.95
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	96.95
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	96.92
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.9
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.89
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	96.89
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.86
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.86
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	96.86
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.83
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	96.83
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.82
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.8
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	96.77
d1xzwa1	119	Purple acid phosphatase, N-terminal domain {Sweet	96.77
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	96.74
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	96.68
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	96.68
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	96.67
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	96.67
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	96.65
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	96.64
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.63
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	96.62
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	96.62
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	96.59
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	96.58
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	96.54
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	96.52
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	96.49
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	96.49
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	96.48
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	96.47
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	96.44
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	96.41
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.39
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	96.38
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	96.35
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	96.35
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.32
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	96.32
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	96.32
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	96.3
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.28
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	96.26
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	96.26
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.25
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	96.25
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	96.25
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	96.22
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	96.22
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	96.19
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	96.18
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	96.17
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	96.15
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	96.15
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	96.13
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.13
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	96.12
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.11
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	96.1
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	96.1
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	96.09
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.09
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.08
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.07
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	96.06
d8faba1	103	Immunoglobulin light chain lambda variable domain,	96.06
d1f6fb1	96	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	96.06
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	96.06
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	96.05
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	96.02
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	96.01
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	95.98
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	95.98
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	95.97
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	95.97
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	95.96
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.91
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	95.91
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	95.9
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	95.9
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	95.89
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	95.88
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	95.87
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	95.87
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	95.87
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.86
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	95.86
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	95.86
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	95.85
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	95.84
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	95.83
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	95.83
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	95.83
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	95.82
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	95.82
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	95.82
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	95.81
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	95.81

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.9e-17  Score=101.44  Aligned_cols=96  Identities=19%  Similarity=0.287  Sum_probs=82.5

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      |.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....++.+......+.|.|.++..+|.|.|+|.+.|..|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   80 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLG   80 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCC
Confidence            45555666778899999999999999999999999999999888888888777788999999999999999999999999


Q ss_pred             eeEEEEEEEe--cCCCCc
Q psy12131        130 SSQQFIQLSG--IPNIPV  145 (245)
Q Consensus       130 ~~~~~~~~~~--~~~~p~  145 (245)
                      .....+.|.+  .|.||.
T Consensus        81 ~~~~~~~l~V~~~P~pP~   98 (101)
T d2cqva1          81 SRQAQVNLTVVDKPDPPA   98 (101)
T ss_dssp             EEECCEEEEEECSCSCCC
T ss_pred             EEEEEEEEEEEecCCCcC
Confidence            8887666655  455554

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.75  E-value=6.2e-18  Score=102.86  Aligned_cols=93  Identities=20%  Similarity=0.372  Sum_probs=82.1

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      .|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+...+....|.|.++...|.|.|+|.|.|..
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   80 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY   80 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence            37777778788889999999999999999999999999999988777777677778899999999999999999999999


Q ss_pred             ceeEEEEEEEecC
Q psy12131        129 GSSQQFIQLSGIP  141 (245)
Q Consensus       129 g~~~~~~~~~~~~  141 (245)
                      |.....+.|.+.+
T Consensus        81 G~~~~~~~l~V~~   93 (97)
T d1koaa1          81 GTKEEIVFLNVTR   93 (97)
T ss_dssp             EEEEEEECCEEEC
T ss_pred             CEEEEEEEEEEee
Confidence            9888877776654

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=1.3e-17  Score=100.58  Aligned_cols=91  Identities=16%  Similarity=0.317  Sum_probs=82.7

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +|.+...+..+.+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+........|.|.++...|.|.|+|.|.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~   81 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECC
Confidence            67777777888999999999999999999999999999998888888777777778899999999999999999999999


Q ss_pred             ceeEEEEEEEe
Q psy12131        129 GSSQQFIQLSG  139 (245)
Q Consensus       129 g~~~~~~~~~~  139 (245)
                      |.....+.|.+
T Consensus        82 G~~~~~~~l~V   92 (93)
T d1wiua_          82 GEDEAIFEVIV   92 (93)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
Confidence            99988888765

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.73  E-value=1e-16  Score=98.28  Aligned_cols=93  Identities=20%  Similarity=0.324  Sum_probs=81.0

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEec-CceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVS-SEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      .+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+... .....|.|.++...|.|.|+|.|.|
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   86 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN   86 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEE
Confidence            357777777778889999999999999999999999999999998888776543 4467899999999999999999999


Q ss_pred             CCceeEEEEEEEec
Q psy12131        127 NLGSSQQFIQLSGI  140 (245)
Q Consensus       127 ~~g~~~~~~~~~~~  140 (245)
                      ..|....++.|.+.
T Consensus        87 ~~G~~~~~~~L~V~  100 (102)
T d1fhga_          87 SLGEATCTAELLVE  100 (102)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            99998888877653

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.73  E-value=1.3e-16  Score=97.10  Aligned_cols=94  Identities=20%  Similarity=0.279  Sum_probs=80.7

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEE-EecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM-HVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      .+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....+... ...+....|.|.++...|.|.|+|.+.|
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence            367777777788899999999999999999999999999999987766554 3445567899999999999999999999


Q ss_pred             CCceeEEEEEEEecC
Q psy12131        127 NLGSSQQFIQLSGIP  141 (245)
Q Consensus       127 ~~g~~~~~~~~~~~~  141 (245)
                      ..|.......|.+.+
T Consensus        83 ~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          83 IAGETSSHAFLLVQA   97 (98)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEE
Confidence            999988888877653

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.72  E-value=6.3e-17  Score=96.46  Aligned_cols=87  Identities=22%  Similarity=0.305  Sum_probs=76.0

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      |.|...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....++.+.    ...|.|.++...|.|.|+|.|.|..|
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS----GGELRFSKLVLEDSGMYQCVAENKHG   77 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE----TTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeee----eeeEEEEeecccCCEEEEEEEEeCCC
Confidence            67777777888999999999999999999999999999999887777663    24799999999999999999999999


Q ss_pred             eeEEEEEEEec
Q psy12131        130 SSQQFIQLSGI  140 (245)
Q Consensus       130 ~~~~~~~~~~~  140 (245)
                      .......|.+.
T Consensus        78 ~~~~~~~l~V~   88 (89)
T d1cs6a4          78 TVYASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            88877777653

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.67  E-value=6.9e-17  Score=96.89  Aligned_cols=87  Identities=18%  Similarity=0.349  Sum_probs=77.2

Q ss_pred             eecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ  133 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  133 (245)
                      ..|..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+........|.|.++...|.|.|.|.+.|..|....
T Consensus         4 ~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   83 (91)
T d1tnna_           4 TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEA   83 (91)
T ss_dssp             BCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCE
T ss_pred             eCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEE
Confidence            34566788999999999999999999999999999888887877777778889999999999999999999999999888


Q ss_pred             EEEEEec
Q psy12131        134 FIQLSGI  140 (245)
Q Consensus       134 ~~~~~~~  140 (245)
                      .+.|.+.
T Consensus        84 ~~~l~V~   90 (91)
T d1tnna_          84 EFTLTIQ   90 (91)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEE
Confidence            8777653

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.66  E-value=1.1e-15  Score=91.00  Aligned_cols=86  Identities=22%  Similarity=0.379  Sum_probs=70.9

Q ss_pred             CCeEEeec-ceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         49 PPEVSVEK-QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        49 ~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      +|.+...+ ..+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... ++.+..    ..|.|.++...|.|.|.|.|.|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~~~----~~L~i~~v~~~d~G~Y~C~a~N~   76 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVTD----SGLVIKGVKNGDKGYYGCRATNE   76 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEET----TEEEESSCCSTTCEEEEEEEEET
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEEee----eeEEECCCChhhCEEEEEEEEEC
Confidence            46666554 4567889999999999999999999999999988654 444432    25999999999999999999999


Q ss_pred             CceeEEEEEEEe
Q psy12131        128 LGSSQQFIQLSG  139 (245)
Q Consensus       128 ~g~~~~~~~~~~  139 (245)
                      .|.....+.|.+
T Consensus        77 ~G~~~~~~~l~V   88 (89)
T d1biha4          77 HGDKYFETLVQV   88 (89)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            999888777764

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=2.6e-15  Score=91.60  Aligned_cols=92  Identities=22%  Similarity=0.435  Sum_probs=72.5

Q ss_pred             CCeEEeecce--EEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCc--EEEEecCceeEEEEccCCCCCCeEEEEEE
Q psy12131         49 PPEVSVEKQW--IHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGR--IDMHVSSEKHSLLVRHIKDTDFGNYMCQA  124 (245)
Q Consensus        49 ~p~~~~~~~~--~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  124 (245)
                      ||.+...+..  ..+..|+.+.|.|.+.|.|.|.+.|++++..+.....  .........+.|.|.++...|.|.|.|.|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA   82 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEE
Confidence            6776655443  3567899999999999999999999999998865432  12223344678999999999999999999


Q ss_pred             EeCCceeEEEEEEEec
Q psy12131        125 SNNLGSSQQFIQLSGI  140 (245)
Q Consensus       125 ~n~~g~~~~~~~~~~~  140 (245)
                      .|..|.....+.|.+.
T Consensus        83 ~N~~G~~~~~~~l~V~   98 (100)
T d1qz1a3          83 ENKAGEQDASIHLKVF   98 (100)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEEE
Confidence            9999998888877764

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.63  E-value=1.7e-15  Score=90.65  Aligned_cols=86  Identities=19%  Similarity=0.278  Sum_probs=68.6

Q ss_pred             cCCeEEee-cceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         48 YPPEVSVE-KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        48 ~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      .+|.+... +....+.+|+.+.|.|.+.|.|.|.+.|++++.......      ......|.|.++..+|.|.|.|.|.|
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~------~~~~~~L~I~~v~~~D~G~Y~C~a~N   76 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW------LSSEPLLHIQNVDFEDEGTYECEAEN   76 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC------SBSSSEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe------eeeeeEEEeCCCCccCCEEEEEEEEE
Confidence            35666554 567788999999999999999999999999664432211      11345799999999999999999999


Q ss_pred             CCceeEEEEEEEe
Q psy12131        127 NLGSSQQFIQLSG  139 (245)
Q Consensus       127 ~~g~~~~~~~~~~  139 (245)
                      ..|.....+.|.+
T Consensus        77 ~~G~~~~~~~l~V   89 (91)
T d1cs6a3          77 IKGRDTYQGRIII   89 (91)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE
Confidence            9999888777765

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.3e-14  Score=88.63  Aligned_cols=93  Identities=24%  Similarity=0.414  Sum_probs=75.5

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCC-eEEEEECCEEe----c--cCCcEEEEecCceeEEEEccCC-CCCCeE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAI----T--LGGRIDMHVSSEKHSLLVRHIK-DTDFGN  119 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~~~~----~--~~~~~~~~~~~~~~~l~i~~~~-~~d~g~  119 (245)
                      .||.+...+....+.+|+.+.|.|.+.|.|.| .+.|++++...    .  ...++.+......+.|.|.++. ..|.|.
T Consensus         1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~   80 (101)
T d3b5ha1           1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ   80 (101)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEE
T ss_pred             CCceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEE
Confidence            37888888888889999999999999999987 79999865322    1  1234666666677899999998 579999


Q ss_pred             EEEEEEeCCceeEEEEEEEec
Q psy12131        120 YMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus       120 y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      |.|.|.|..|.....+.|.++
T Consensus        81 Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          81 YRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEECCCEEEEEEEEEEC
Confidence            999999999999888887763

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.1e-14  Score=85.56  Aligned_cols=81  Identities=19%  Similarity=0.294  Sum_probs=64.0

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCC-eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      |.|...|....+.+|+.+.|.|.+.|.|.| .+.|++++..+....         ...+.|.....+|.|.|+|.|.|..
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~---------~~~~~l~~~~~~d~G~Y~C~A~N~~   72 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA---------PSPSVLNVTGVTQSTMFSCEAHNLK   72 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE---------ESSEEEEECCCSSCEEEEEEEEETT
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC---------CcceEEecCCccccEEEEEEEEcCC
Confidence            677777888889999999999999999988 899999999876532         1235556666779999999999999


Q ss_pred             ceeE-EEEEEEe
Q psy12131        129 GSSQ-QFIQLSG  139 (245)
Q Consensus       129 g~~~-~~~~~~~  139 (245)
                      |... ..+.+.+
T Consensus        73 G~~~S~~~~v~V   84 (85)
T d1rhfa2          73 GLASSRTATVHL   84 (85)
T ss_dssp             EEEECCCEEEEE
T ss_pred             CcEEEEEEEEEE
Confidence            9643 3455543

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.59  E-value=4.1e-15  Score=90.08  Aligned_cols=82  Identities=23%  Similarity=0.440  Sum_probs=67.8

Q ss_pred             eEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEE-EEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRID-MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+....+.. .........|.|.++..+|.|.|+|.|.|..|.....+.
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   93 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   93 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEE
Confidence            4567889999999999999999999999999887543321 122234468999999999999999999999999888888


Q ss_pred             EEe
Q psy12131        137 LSG  139 (245)
Q Consensus       137 ~~~  139 (245)
                      |.+
T Consensus        94 l~V   96 (97)
T d3dara1          94 LDV   96 (97)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=9e-15  Score=87.56  Aligned_cols=88  Identities=23%  Similarity=0.333  Sum_probs=69.0

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      +.|...|....+.+|+.+.|.|.+.|.|.|.+.|++++..+.......+.... ...|.|.++...|.|.|+|.|.|..+
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~n~~~   80 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS-NNYLQIRGIKKTDEGTYRCEGRILAR   80 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECT-TSCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeee-eeeEEECCCCHHhCEEEEEEEEECcC
Confidence            45666677888999999999999999999999999999888765443332222 24699999999999999999999876


Q ss_pred             eeEEEEEEE
Q psy12131        130 SSQQFIQLS  138 (245)
Q Consensus       130 ~~~~~~~~~  138 (245)
                      .......+.
T Consensus        81 ~~~~~~~i~   89 (92)
T d1epfa2          81 GEINFKDIQ   89 (92)
T ss_dssp             TEEEEEEEE
T ss_pred             CEEEEEEEE
Confidence            554444443

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.2e-15  Score=88.35  Aligned_cols=81  Identities=20%  Similarity=0.189  Sum_probs=66.9

Q ss_pred             cCCCeeEEEEEe---CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        153 LGPDGYRLVWQV---DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       153 ~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      ....++.|+|.+   +++.++..|.++++... ...|..+.....         ..+.+.+|.+++.|.|||.|.|..|.
T Consensus        14 ~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~-~~~~~~~~~~~~---------~~~~v~~L~p~t~Y~frV~A~N~~G~   83 (97)
T d2crza1          14 PKAKEIQLRWGPPLVDGGSPISCYSVEMSPIE-KDEPREVYQGSE---------VECTVSSLLPGKTYSFRLRAANKMGF   83 (97)
T ss_dssp             CCSSEEEEECCCCSCCTTSCCCEEEEEEECTT-SCCCEEEEEESC---------SEEEEESCCTTCEEEECCEEECSSCB
T ss_pred             eeCCEEEEEEeCCCcCCCCceeEEEEEEEcCc-CCceeEeecCCc---------eEEEEcCCCCCEEEEEEEEEecCCeE
Confidence            456789999996   33458999999998865 566766543222         67999999999999999999999999


Q ss_pred             CCCCcceEEecCCC
Q psy12131        230 SRPSKAYVFATEGA  243 (245)
Q Consensus       230 ~~~s~~~~~~t~~~  243 (245)
                      |.+|+.+.++|.+|
T Consensus        84 s~~S~~~~~~T~pG   97 (97)
T d2crza1          84 GPFSEKCDITTAPG   97 (97)
T ss_dssp             CCCCCCEEEECCCS
T ss_pred             cCCcCCCeEEeCcC
Confidence            99999999999875

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3e-14  Score=87.03  Aligned_cols=94  Identities=18%  Similarity=0.281  Sum_probs=73.5

Q ss_pred             ecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEe-----cCceeEEEEccCCCCCCeEEE
Q psy12131         47 IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHV-----SSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        47 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      ..||.+....   ....++...+.|.+.|.|.|.+.|++++..+..+....+..     ....+.|.|..+...|.|.|+
T Consensus         2 ~~pP~it~~~---~~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (103)
T d1wwbx_           2 HFAPTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT   78 (103)
T ss_dssp             CCCCCCCCCC---CCCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             ccCCeeEEcC---CCccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEE
Confidence            4566654322   23467788899999999999999999999998766554322     112457999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEecCCC
Q psy12131        122 CQASNNLGSSQQFIQLSGIPNI  143 (245)
Q Consensus       122 C~~~n~~g~~~~~~~~~~~~~~  143 (245)
                      |.|.|..|.....+.|.+...|
T Consensus        79 C~a~N~~G~~~~~~~v~V~~~P  100 (103)
T d1wwbx_          79 LIAKNEYGKDEKQISAHFMGWP  100 (103)
T ss_dssp             EEEECSSCEEEEEEEECCSCCC
T ss_pred             EEEeccCCEEEEEEEEEEEeCC
Confidence            9999999999999998876554

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.57  E-value=1.7e-14  Score=87.26  Aligned_cols=85  Identities=20%  Similarity=0.326  Sum_probs=68.2

Q ss_pred             ecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEE--EecCceeEEEEccCCCCCCeEEEEEEEeCCceeE
Q psy12131         55 EKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ  132 (245)
Q Consensus        55 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  132 (245)
                      .+..+.+..|+.+.|.|.+.|.|.|.+.|++++..+.......+  ......+.|.|.++..+|.|.|+|.|.|..|...
T Consensus         9 ~~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   88 (97)
T d1biha3           9 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ   88 (97)
T ss_dssp             ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCE
T ss_pred             CCCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEE
Confidence            34567788999999999999999999999999998875544322  2333456899999999999999999999998754


Q ss_pred             -EEEEEEe
Q psy12131        133 -QFIQLSG  139 (245)
Q Consensus       133 -~~~~~~~  139 (245)
                       ..+.|.+
T Consensus        89 s~s~~L~V   96 (97)
T d1biha3          89 KHSLKLTV   96 (97)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence             4566654

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7.4e-14  Score=83.19  Aligned_cols=79  Identities=11%  Similarity=0.122  Sum_probs=65.2

Q ss_pred             eEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEE
Q psy12131         58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL  137 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~  137 (245)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++.......   .......+.|.|.++..+|.|.|.|.|.|..|.....+.|
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v   86 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK---VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV   86 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSE---EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCccceeee---eeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEE
Confidence            4556789999999999999999999999776544322   2233456789999999999999999999999999888887


Q ss_pred             Ee
Q psy12131        138 SG  139 (245)
Q Consensus       138 ~~  139 (245)
                      .+
T Consensus        87 ~V   88 (90)
T d1vcaa2          87 EI   88 (90)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.55  E-value=5.7e-14  Score=87.01  Aligned_cols=91  Identities=22%  Similarity=0.346  Sum_probs=67.5

Q ss_pred             CCeEEee-cceEEecCCCeEEEEEEEeecCCCeEEEEECCEEecc----CC---------cEEEEecCceeEEEEccCCC
Q psy12131         49 PPEVSVE-KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITL----GG---------RIDMHVSSEKHSLLVRHIKD  114 (245)
Q Consensus        49 ~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~----~~---------~~~~~~~~~~~~l~i~~~~~  114 (245)
                      +|.+... |....+..|+.+.|.|.+.|.|.|.+.|++++.....    ..         ..........+.|.|.++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            4666543 5678899999999999999999999999986533211    11         01111222356899999999


Q ss_pred             CCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131        115 TDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus       115 ~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      .|.|.|+|.|.|..|.....+.|.+
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHCeEEEEEEEECCCEEEEEEEEEE
Confidence            9999999999999999988888765

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.5e-14  Score=85.99  Aligned_cols=92  Identities=26%  Similarity=0.395  Sum_probs=70.3

Q ss_pred             EecCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEe--c--CceeEEEEccCCCCCCeEEE
Q psy12131         46 VIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHV--S--SEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        46 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~--~--~~~~~l~i~~~~~~d~g~y~  121 (245)
                      |..||.+.....   ...+....+.|.+.|.|.|.+.|++++..+..........  .  ...+.|.|.++...|.|.|+
T Consensus         2 V~~PP~i~~~~~---~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (105)
T d1wwca_           2 VYYPPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT   78 (105)
T ss_dssp             CCCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             EEcCCeeEEeCC---CEEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEE
Confidence            456776543322   2345556688899999999999999999988766544322  2  22467999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEec
Q psy12131        122 CQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus       122 C~~~n~~g~~~~~~~~~~~  140 (245)
                      |.|.|..|.....+.+.+.
T Consensus        79 C~a~N~~G~~~~~~~v~V~   97 (105)
T d1wwca_          79 LIAKNPLGTANQTINGHFL   97 (105)
T ss_dssp             EEEEETTEEEEEEEEECCS
T ss_pred             EEEEcCCCEEEEEEEEEEE
Confidence            9999999999998888765

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.2e-14  Score=91.94  Aligned_cols=93  Identities=18%  Similarity=0.306  Sum_probs=73.9

Q ss_pred             cCCeEEe-----ecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC-----------------------------
Q psy12131         48 YPPEVSV-----EKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-----------------------------   93 (245)
Q Consensus        48 ~~p~~~~-----~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~-----------------------------   93 (245)
                      +||.+..     .+..+.+..|+.+.|.|.+.|.|.|.+.|++++..+...                             
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            5666532     345778899999999999999999999999866544221                             


Q ss_pred             CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131         94 GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus        94 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      .++.+......+.|.|.++..+|.|.|+|.|.|..|.....+.|.+.
T Consensus        83 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          83 GRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             SSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             ceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            13344445567789999999999999999999999999888888764

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.3e-14  Score=83.91  Aligned_cols=80  Identities=20%  Similarity=0.262  Sum_probs=63.9

Q ss_pred             ecceEEecCCCeEEEEEEEe-ecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEE
Q psy12131         55 EKQWIHTAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ  133 (245)
Q Consensus        55 ~~~~~~~~~g~~~~l~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  133 (245)
                      ++....+..|+++.|.|.+. +.|.|.+.|++.+..+..     .......+.|.|.++..+|.|.|.|.|.|..|....
T Consensus         9 p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~   83 (90)
T d1gsma1           9 PEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-----VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQH   83 (90)
T ss_dssp             CCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-----EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-----eeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEE
Confidence            33456778999999999885 788899999986654321     223345678999999999999999999999999888


Q ss_pred             EEEEEe
Q psy12131        134 FIQLSG  139 (245)
Q Consensus       134 ~~~~~~  139 (245)
                      ++.|.+
T Consensus        84 s~~l~V   89 (90)
T d1gsma1          84 TVQLLV   89 (90)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            887764

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.4e-14  Score=84.46  Aligned_cols=84  Identities=17%  Similarity=0.307  Sum_probs=67.1

Q ss_pred             cceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEe--cCceeEEEEccCCCCCCeEEEEEEEeCCcee-E
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQASNNLGSS-Q  132 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~-~  132 (245)
                      |..+.+.+|+.+.|.|.+.+.|.|.+.|++++..+.......+..  ......|.|.++..+|.|.|+|.|.|..|.. +
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence            456778899999999999999999999999999887665544432  2334689999999999999999999999864 3


Q ss_pred             EEEEEEe
Q psy12131        133 QFIQLSG  139 (245)
Q Consensus       133 ~~~~~~~  139 (245)
                      ..+.|.+
T Consensus        83 ~~~~l~V   89 (91)
T d1rhfa1          83 QPVWLTV   89 (91)
T ss_dssp             CCEEEEE
T ss_pred             EEEEEEE
Confidence            4455543

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.5e-14  Score=84.04  Aligned_cols=74  Identities=14%  Similarity=0.129  Sum_probs=62.1

Q ss_pred             EEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEEEE
Q psy12131         59 IHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      ..+.+|+.++|.|.+.|.|.|.+.|++++..+...          ...|.|.++..+|.|.|.|.|.|..|.....+.|.
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~----------~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~   78 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG----------GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV   78 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEE----------SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             eEEECCCeEEEEEEeEcCCchheEEEeecccceee----------eeeeeeeecccccccEEEEEEEeCCCEEEEEEEEE
Confidence            34679999999999999999999999876543322          23689999999999999999999999998888887


Q ss_pred             ecCC
Q psy12131        139 GIPN  142 (245)
Q Consensus       139 ~~~~  142 (245)
                      +...
T Consensus        79 V~~~   82 (84)
T d2nxyb2          79 VLAF   82 (84)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            7543

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.7e-15  Score=93.61  Aligned_cols=103  Identities=21%  Similarity=0.273  Sum_probs=76.1

Q ss_pred             EEEEEecCCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCC
Q psy12131        134 FIQLSGIPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGL  211 (245)
Q Consensus       134 ~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l  211 (245)
                      ...+...|.+|...... ....+++.|.|.+  +++.++..|.++|+.......|..+......        ..+++.+|
T Consensus         9 ~~~~~~~P~pP~~~~v~-~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~--------~~~~v~~L   79 (117)
T d1uema_           9 NYDLSDLPGPPSKPQVT-DVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKT--------TLYTVRGL   79 (117)
T ss_dssp             CCCSCCSCBCCCCCEEE-EECSSCEEEECCCCBCSSSCCCEEEEEEEETTTEEEEEEEEEEECS--------SEEEECSC
T ss_pred             cceeCccCcCCCCCEEE-EccCCEEEEEEECCCcCCCCeEEEEEEEeccCCceeeEEecccccc--------ccceECCC
Confidence            33444566666544332 3567899999997  4556899999998876545557665443222        67999999


Q ss_pred             CCCceEEEEEEEEecCCCCCCCcce-EEecCCCCC
Q psy12131        212 QLFTQYEASVLAKNRFGWSRPSKAY-VFATEGAET  245 (245)
Q Consensus       212 ~~~~~y~~~v~a~N~~G~~~~s~~~-~~~t~~~~~  245 (245)
                      .+++.|.|+|.|.|..|.|.+|... .++|.+.+|
T Consensus        80 ~p~t~Y~frV~A~N~~G~s~~S~~s~~v~t~~~~P  114 (117)
T d1uema_          80 RPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGP  114 (117)
T ss_dssp             CTTCEEEEEEEEEETTEEEEECCCCCCEECCCSSC
T ss_pred             CCCCEEEEEEEEEeCCcCCCCcCCCcCEEeCCCCc
Confidence            9999999999999999999988765 477877654

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.8e-15  Score=88.51  Aligned_cols=89  Identities=13%  Similarity=0.137  Sum_probs=71.7

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCe-EEEEEEEeC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG-NYMCQASNN  127 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~  127 (245)
                      .|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....  .........|.|.++..+|.| .|+|.|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~   79 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM--KSGGLPSLGLTLANVTSDLNRKNVTCWAEND   79 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC--CCCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeee--eeeeccceeEEEccccccccceEEEEEEEcC
Confidence            57777777778889999999999999999999999998866543211  122345678999999999999 799999999


Q ss_pred             CceeEEEEEEEe
Q psy12131        128 LGSSQQFIQLSG  139 (245)
Q Consensus       128 ~g~~~~~~~~~~  139 (245)
                      .|.....+.|.+
T Consensus        80 ~G~~~~s~~l~V   91 (92)
T d2ifga1          80 VGRAEVSVQVNV   91 (92)
T ss_dssp             TEECCEEECCCC
T ss_pred             CCEEEEEEEEEE
Confidence            999887776543

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=1.6e-13  Score=81.62  Aligned_cols=79  Identities=20%  Similarity=0.323  Sum_probs=64.5

Q ss_pred             cceEEecCCCeEEEEEEEe-ecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEE
Q psy12131         56 KQWIHTAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF  134 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  134 (245)
                      +....+.+|+.+.|.|.+. +.|.+.+.|++++..+...... .    ....|.|.++...|.|.|.|.|.|..|.....
T Consensus         9 p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~-~----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~   83 (89)
T d1gl4b_           9 QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM-D----FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGT   83 (89)
T ss_dssp             CCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE-E----ETTEEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccE-e----eceEEEEecCCcccCEEEEEEEEECCCEEEEE
Confidence            4567788999999999997 5677899999988766544321 1    13479999999999999999999999998888


Q ss_pred             EEEEe
Q psy12131        135 IQLSG  139 (245)
Q Consensus       135 ~~~~~  139 (245)
                      +.|.+
T Consensus        84 ~~l~V   88 (89)
T d1gl4b_          84 ATLHV   88 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87765

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.51  E-value=3.9e-14  Score=85.23  Aligned_cols=83  Identities=18%  Similarity=0.271  Sum_probs=67.8

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCC-eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .|.+...+..+.+.+|+.+.|.|.+.|.|.| .+.|++++..+.......... .....|.|.++..+|.|.|.|.|.|.
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~   80 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR-KDEGSLVFLRPQASDEGHYQCFAETP   80 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEEC-TTSCCEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeec-ccceEEEEeccChhcCeEEEEEEEeC
Confidence            4677777778889999999999999999876 799999998886554333322 33467999999999999999999999


Q ss_pred             CceeE
Q psy12131        128 LGSSQ  132 (245)
Q Consensus       128 ~g~~~  132 (245)
                      .|...
T Consensus        81 ~G~~~   85 (94)
T d1biha1          81 AGVAS   85 (94)
T ss_dssp             TEEEE
T ss_pred             CCEEE
Confidence            99743

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.50  E-value=3.5e-14  Score=85.91  Aligned_cols=88  Identities=23%  Similarity=0.422  Sum_probs=66.0

Q ss_pred             CCeEEeecceEEecC---CCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         49 PPEVSVEKQWIHTAP---DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~---g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      +|.+...|....+..   ++.+.|.|.+.|.|.|.+.|++++..+........... ....|.|..+...|.|.|.|.|.
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~   82 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV-AGDLVISNPVKAKDAGSYQCVAT   82 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEE-TTEEEEESCCHHHHCEEEEEEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEee-eeeEEEEecccccCCEEEEEEEE
Confidence            566666666665554   47899999999999999999999998865543333222 23567888888899999999999


Q ss_pred             eCCceeE-EEEEE
Q psy12131        126 NNLGSSQ-QFIQL  137 (245)
Q Consensus       126 n~~g~~~-~~~~~  137 (245)
                      |..|... ..+.|
T Consensus        83 N~~G~~~S~~a~L   95 (97)
T d1cs6a1          83 NARGTVVSREASL   95 (97)
T ss_dssp             ETTEEEECCCEEE
T ss_pred             ECCCEEEEEEEEE
Confidence            9999753 34444

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.4e-13  Score=82.50  Aligned_cols=89  Identities=26%  Similarity=0.455  Sum_probs=66.9

Q ss_pred             CCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEE-EeeCCCCCCCcceeeeEEEecCCCCCceE
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRN-IVIPSDGSLAGPIYTQSYNITGLQLFTQY  217 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~y  217 (245)
                      |.||..... .....+++.|.|.+  +++.++.+|.|+|+...  ..|.. .......        ..+.+.+|.+++.|
T Consensus         1 P~~P~~~~~-~~~~~~sv~l~W~~p~~~~~~I~~Y~i~~~~~~--~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y   69 (93)
T d2vkwa2           1 PSAPKLEGQ-MGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALS--SEWKPEIRLPSGS--------DHVMLKSLDWNAEY   69 (93)
T ss_dssp             CCCCEEEEE-ECTTSSCEEEEEECCCCTTSCCCEEEEEEEETT--SCCCCCEEECTTC--------CEEEECSCCTTCEE
T ss_pred             CCCCccCEe-EEcCCCEEEEEeeCCCCCcCceEEEEEEeeecC--cceeeeeeccCCc--------eEEEEeccccceEE
Confidence            455655433 24667899999998  45578999999998864  33432 3333332        68999999999999


Q ss_pred             EEEEEEEecCCCCCCCcceEEecC
Q psy12131        218 EASVLAKNRFGWSRPSKAYVFATE  241 (245)
Q Consensus       218 ~~~v~a~N~~G~~~~s~~~~~~t~  241 (245)
                      .|+|.|.|..|.|+++. +.++|.
T Consensus        70 ~~~V~A~N~~G~s~ps~-~~~~T~   92 (93)
T d2vkwa2          70 EVYVVAENQQGKSKAAH-FVFRTA   92 (93)
T ss_dssp             EEEEEEEETTEECCCEE-EEEECC
T ss_pred             EEEEEEEcCCCCcCCEe-EEEEec
Confidence            99999999999999985 667764

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=6.2e-13  Score=80.27  Aligned_cols=86  Identities=15%  Similarity=0.314  Sum_probs=65.8

Q ss_pred             eecceEEecCCCeEEEEEEEeecCC-CeEEEEE-CCEEec-cCCcEEEE-ecCceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYANPP-AKVEWFR-DGTAIT-LGGRIDMH-VSSEKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~w~~-~~~~~~-~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      ..|....+..|+.+.|.|.+.|.|. +.+.|++ ++..+. ...++.+. .....+.|.|.++..+|.|.|+|.|.|..|
T Consensus         5 i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   84 (97)
T d1epfa1           5 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDG   84 (97)
T ss_dssp             EESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             EECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCC
Confidence            4455677889999999999999885 7999998 555444 33444443 344567899999999999999999999998


Q ss_pred             ee-EEEEEEEe
Q psy12131        130 SS-QQFIQLSG  139 (245)
Q Consensus       130 ~~-~~~~~~~~  139 (245)
                      .. ...+.|.+
T Consensus        85 ~~~~~tv~l~V   95 (97)
T d1epfa1          85 TQSEATVNVKI   95 (97)
T ss_dssp             EEEEEEEEEEE
T ss_pred             cEEEEEEEEEE
Confidence            64 34566654

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.9e-13  Score=82.35  Aligned_cols=89  Identities=19%  Similarity=0.300  Sum_probs=69.0

Q ss_pred             CeEEeec-ceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEE---e-c--------CceeEEEEccCCCCC
Q psy12131         50 PEVSVEK-QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMH---V-S--------SEKHSLLVRHIKDTD  116 (245)
Q Consensus        50 p~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~---~-~--------~~~~~l~i~~~~~~d  116 (245)
                      |.+..+. ..+.+..|+.+.|.|.+.+.|.|.+.|++++..+.........   . .        ...+.|.|.++...|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            5555443 3456788999999999999999999999999887654322111   0 0        013589999999999


Q ss_pred             Ce-EEEEEEEeCCceeEEEEEEE
Q psy12131        117 FG-NYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus       117 ~g-~y~C~~~n~~g~~~~~~~~~  138 (245)
                      .| .|.|.|.|..|.....+.|+
T Consensus        82 ~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GSSCEEEEEECSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEeCCCeEEEEEEEE
Confidence            99 59999999999998888876

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.5e-13  Score=85.19  Aligned_cols=91  Identities=15%  Similarity=0.138  Sum_probs=69.4

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecC---CCeEEEEECCEEec-c--CCcEEEEe------cCceeEEEEccCCCCCC
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANP---PAKVEWFRDGTAIT-L--GGRIDMHV------SSEKHSLLVRHIKDTDF  117 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~---~~~~~w~~~~~~~~-~--~~~~~~~~------~~~~~~l~i~~~~~~d~  117 (245)
                      |.|...|....+..|+++.|.|.+.|.|   .|.+.|++++.... .  ..++....      ....+.|.|.+++..|.
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence            3455567778889999999999999988   57899999764322 1  12222211      11246799999999999


Q ss_pred             eEEEEEEEeCCceeEEEEEEEec
Q psy12131        118 GNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus       118 g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      |.|+|.|.|..|.....+.|.+.
T Consensus        85 G~Y~C~a~N~~G~~~~~~~L~V~  107 (110)
T d2avga1          85 GGYRCEVSTKDKFDCSNFNLTVH  107 (110)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cEEEEEEEECCCeEEEEEEEEEE
Confidence            99999999999999998888775

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.3e-13  Score=82.41  Aligned_cols=82  Identities=18%  Similarity=0.194  Sum_probs=64.7

Q ss_pred             CCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecC-------ceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131         63 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSS-------EKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI  135 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  135 (245)
                      .+....+.|.+.|.|.|.+.|++++..+............       ..+.|.|.++...|.|.|.|.|.|..|.....+
T Consensus        14 ~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i   93 (107)
T d1he7a_          14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (107)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEE
Confidence            3444446668999999999999999998876654432211       235799999999999999999999999999999


Q ss_pred             EEEecCCCC
Q psy12131        136 QLSGIPNIP  144 (245)
Q Consensus       136 ~~~~~~~~p  144 (245)
                      .|.+...|.
T Consensus        94 ~v~v~~~P~  102 (107)
T d1he7a_          94 MAAFMDNPF  102 (107)
T ss_dssp             EECCCSCTT
T ss_pred             EEEEEcCCC
Confidence            998875553

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.8e-14  Score=84.22  Aligned_cols=72  Identities=17%  Similarity=0.307  Sum_probs=59.6

Q ss_pred             cceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEE
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFI  135 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~  135 (245)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....             +..++.+|.|.|.|.|.|..|.....+
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~~-------------~~~v~~~d~G~Y~C~A~N~~G~~~~~~   77 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE-------------SVTVTRDLEGTYLCRARSTQGEVTREV   77 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTS-------------CEECCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeeee-------------eeccccCCCCEEEEEEEcCCCEEEEEE
Confidence            4567788999999999999999999999998876654322             335677899999999999999988888


Q ss_pred             EEEec
Q psy12131        136 QLSGI  140 (245)
Q Consensus       136 ~~~~~  140 (245)
                      .|.+.
T Consensus        78 ~l~V~   82 (84)
T d2oz4a3          78 TVNVL   82 (84)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77764

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.6e-13  Score=81.82  Aligned_cols=90  Identities=17%  Similarity=0.153  Sum_probs=64.0

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEE-E--CCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWF-R--DGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~-~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      .|.|. .+..+.+..|+++.|.|.+.|.|.|.+.|+ .  ++..........+........|.|.++..+|.|.|+|.|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence            57775 467788999999999999999998854433 2  2333322222223333345679999999999999999999


Q ss_pred             eCCceeE-EEEEEEe
Q psy12131        126 NNLGSSQ-QFIQLSG  139 (245)
Q Consensus       126 n~~g~~~-~~~~~~~  139 (245)
                      |..|... ....|.+
T Consensus        81 N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          81 TEGGVGISNYAELVV   95 (96)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCCeEEEEEEEEEE
Confidence            9999754 3456654

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1e-13  Score=86.40  Aligned_cols=90  Identities=16%  Similarity=0.164  Sum_probs=67.2

Q ss_pred             eecceEEecCCCeEEEEEEEeecC---CCeEEEEECCEEec---cCCcEEEEe------cCceeEEEEccCCCCCCeEEE
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYANP---PAKVEWFRDGTAIT---LGGRIDMHV------SSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~~---~~~~~w~~~~~~~~---~~~~~~~~~------~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      ..|..+.+..|+.+.|.|.+.|.|   .|.+.|++++....   ....+.+..      ....+.|.|.++..+|.|.|+
T Consensus         5 ~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (113)
T d2dava1           5 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYR   84 (113)
T ss_dssp             SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEE
T ss_pred             ECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEE
Confidence            345667888999999999999988   57999999764321   122222211      112457999999999999999


Q ss_pred             EEEEeCCceeEEEEEEEecCCC
Q psy12131        122 CQASNNLGSSQQFIQLSGIPNI  143 (245)
Q Consensus       122 C~~~n~~g~~~~~~~~~~~~~~  143 (245)
                      |.|.|..|.....+.|.+...+
T Consensus        85 C~a~N~~G~~~~~~~L~V~~~~  106 (113)
T d2dava1          85 CEVTYKDKFDSCSFDLEVHEST  106 (113)
T ss_dssp             EEEECSSCEEEECCEEEEECCC
T ss_pred             EEEEeCCCEEEEEEEEEEEcCC
Confidence            9999999998888777775433

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.2e-13  Score=84.18  Aligned_cols=96  Identities=19%  Similarity=0.200  Sum_probs=70.7

Q ss_pred             cCCCCccccCccccCCCeeEEEEEeC---CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCce
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQVD---TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ  216 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  216 (245)
                      .|.+|.....  ....+++.|.|.++   ++.++.+|.++|+... ...|........    .......+.+.+|.+++.
T Consensus         2 vP~~P~~~~~--~~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~-~~~~~~~~~~~~----~~~~~~~~~i~~L~p~t~   74 (101)
T d2haza1           2 TPSSPSIDQV--EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVG-EEVWHSKWYDAK----EASMEGIVTIVGLKPETT   74 (101)
T ss_dssp             CCCCCEEEEE--EECSSCEEEEEECCSCCTTSCCCEEEEEEEETT-CCCCEEEEEEHH----HHHHHSEEEECSCCTTCE
T ss_pred             cCcCCccCEE--EeeCCEEEEEEeCCCcCccccEEEEEEEEeecC-Ccceeeeeeeee----cccceeEEEecCCCCCeE
Confidence            3556644332  24567899999972   3358999999999876 555654432111    011125789999999999


Q ss_pred             EEEEEEEEecCCCCCCCcceEEecCC
Q psy12131        217 YEASVLAKNRFGWSRPSKAYVFATEG  242 (245)
Q Consensus       217 y~~~v~a~N~~G~~~~s~~~~~~t~~  242 (245)
                      |.|||.|.|..|.|.+|....++|.|
T Consensus        75 Y~frV~A~N~~G~g~~S~~~~~~T~P  100 (101)
T d2haza1          75 YAVRLAALNGKGLGEISAASEFKTQP  100 (101)
T ss_dssp             EEEEEEEEETTEECCCCCCEEEECCC
T ss_pred             EEEEEEEEeCCcCcCCCCceeEEeCC
Confidence            99999999999999999999999986

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.3e-14  Score=85.97  Aligned_cols=98  Identities=22%  Similarity=0.355  Sum_probs=70.6

Q ss_pred             EecCCCCcccc-CccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCC
Q psy12131        138 SGIPNIPVFQK-SSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF  214 (245)
Q Consensus       138 ~~~~~~p~~~~-~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~  214 (245)
                      ...|.+|.... ........++.|.|.+  +++.++.+|.|+|+...  ..|.........      ....+.|.+|.++
T Consensus         8 ~~~P~~P~~p~~~~~~~~~~sv~l~W~~P~~~~~~I~~Y~v~~~~~~--~~~~~~~~~~~~------~~~~~~i~~L~p~   79 (108)
T d1wf5a1           8 RQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENN--APWTVLLASVDP------KATSVTVKGLVPA   79 (108)
T ss_dssp             CCCCCCCSSCEEEECSSSTTEEEEECCCCCCCSSCEEEEEEEEECTT--CCCEEEESSCCT------TCCEEEEESCCTT
T ss_pred             ecCCCCCCCCEEEEEeccCCEEEEEEECCCCCCCccEEEEEEEEecc--CCceEEeeeecC------CccEEEECCCCCC
Confidence            33455554322 1223566799999998  45578999999998753  455544332211      1267999999999


Q ss_pred             ceEEEEEEEEecCCCCCCCcceEEecCCC
Q psy12131        215 TQYEASVLAKNRFGWSRPSKAYVFATEGA  243 (245)
Q Consensus       215 ~~y~~~v~a~N~~G~~~~s~~~~~~t~~~  243 (245)
                      +.|.|||.|.|..|.|.+|..+.+.|.|+
T Consensus        80 t~Y~frV~A~N~~G~s~~S~~~~~~t~PE  108 (108)
T d1wf5a1          80 RSYQFRLCAVNDVGKGQFSKDTERVSLPE  108 (108)
T ss_dssp             CEEEEEEEEEESSCEEEECCCCSCEECCC
T ss_pred             CEEEEEEEEEcCCcCCCCcCCcCCEECCC
Confidence            99999999999999999999887777653

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.9e-13  Score=83.41  Aligned_cols=94  Identities=18%  Similarity=0.269  Sum_probs=69.5

Q ss_pred             cCCCCccccCccccCCCeeEEEEEe---CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCce
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQV---DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ  216 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  216 (245)
                      .|.+|...........+++.|.|.+   +++.++..|.++++.......|........         ..+.+.+|.+++.
T Consensus        10 ~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~~~~~~~~~~~~---------~~~~i~~L~p~t~   80 (107)
T d2crma1          10 KPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGAT---------REHLCDRLNPGCF   80 (107)
T ss_dssp             CCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEECSSC---------SEEEECSCCTTSC
T ss_pred             CCcCCCCCEEEeeecCCEEEEEEEECccCCcceEEEEEEEEEeecCCCcEEEeecCCc---------cEEEEeccCCCCE
Confidence            3455543322223567899999997   234578999999987764444544433222         6799999999999


Q ss_pred             EEEEEEEEecCCCCCCCcceEEecCC
Q psy12131        217 YEASVLAKNRFGWSRPSKAYVFATEG  242 (245)
Q Consensus       217 y~~~v~a~N~~G~~~~s~~~~~~t~~  242 (245)
                      |.|||.|.|..|.|.+|+.+.++|+.
T Consensus        81 Y~~rV~A~n~~G~s~~S~~v~v~Tpa  106 (107)
T d2crma1          81 YRLRVYCISDGGQSAVSESLLVQTPA  106 (107)
T ss_dssp             EEEEEEEEETTEECCCCCCCCCCCCC
T ss_pred             EEEEEEEECCCcCcCCCCcEEEECCC
Confidence            99999999999999999999988853

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.5e-13  Score=81.04  Aligned_cols=92  Identities=24%  Similarity=0.314  Sum_probs=68.9

Q ss_pred             CCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEE
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE  218 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  218 (245)
                      |.+|..... ......++.|.|.+  ..++++.+|.|+|+... ...+.........        ..+.|.+|.+++.|.
T Consensus         4 P~~p~~~~~-~~~s~~si~v~W~~P~~~~g~i~~Y~v~y~~~~-~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~   73 (98)
T d1x5la1           4 PSQVVVIRQ-ERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKD-KEMQSYSTLKAVT--------TRATVSGLKPGTRYV   73 (98)
T ss_dssp             CCCCCCEEC-SCBCSSCEEEEECCCSCCCSCCCEEEEEEEESS-SCCSSCEEEEESS--------SEEEECSCCTTCEEE
T ss_pred             CCCCCceEE-EeccCCEEEEEEECCCCCCCCEEEEEEEeeccc-ccceeeEEecCCc--------eEEEECCCCCCCEEE
Confidence            444444433 35778899999997  34568899999998865 2222222221221        689999999999999


Q ss_pred             EEEEEEecCCCCCCCcceEEecCC
Q psy12131        219 ASVLAKNRFGWSRPSKAYVFATEG  242 (245)
Q Consensus       219 ~~v~a~N~~G~~~~s~~~~~~t~~  242 (245)
                      |+|.|.|..|.|.+|..+.++|..
T Consensus        74 ~~V~a~n~~G~g~~S~~v~~~T~~   97 (98)
T d1x5la1          74 FQVRARTSAGCGRFSQAMEVETGK   97 (98)
T ss_dssp             ECEEEEETTEECCCCCCEEEECCC
T ss_pred             EEEEEEcCCCCcCCCCCEEEEcCC
Confidence            999999999999999999999963

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.8e-13  Score=80.52  Aligned_cols=73  Identities=25%  Similarity=0.440  Sum_probs=61.3

Q ss_pred             ecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCC--cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         55 EKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG--RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        55 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +.....+..|+.+.|.|.+. .|.+.+.|++++..+....  .+.+...+....|.|.++..+|.|.|+|.|.|..
T Consensus         6 ~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   80 (90)
T d1x44a1           6 QLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQ   80 (90)
T ss_dssp             CCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTEE
T ss_pred             CCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecce
Confidence            44567789999999999984 6888999999998886554  4666667778899999999999999999998853

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.6e-13  Score=81.81  Aligned_cols=79  Identities=20%  Similarity=0.270  Sum_probs=64.5

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCC-CeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPP-AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      .+|.+...+..+.+.+|+.+.|.|.+.+.++ +.+.|++++..+....+.....   ...|.|.++..+|+|.|.|.+.|
T Consensus         5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM---GRRLLLRSVQLHDSGNYSCYRAG   81 (93)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEE---SSEEEECSCCGGGCEEEEEESSS
T ss_pred             CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecC---CCEEEECCCChhcCEEEEEEECC
Confidence            4677777788888999999999999998765 5899999998887665544332   33799999999999999999988


Q ss_pred             CCc
Q psy12131        127 NLG  129 (245)
Q Consensus       127 ~~g  129 (245)
                      ..+
T Consensus        82 ~~~   84 (93)
T d1n26a1          82 RPA   84 (93)
T ss_dssp             SCS
T ss_pred             ccc
Confidence            654

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=4.2e-13  Score=81.14  Aligned_cols=86  Identities=16%  Similarity=0.189  Sum_probs=64.7

Q ss_pred             CCCCccccCccccCCCeeEEEEEe---CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceE
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQV---DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY  217 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y  217 (245)
                      |.+|...... ....+++.|.|.+   +++.++.+|.|+|+... ...|..+......       ...+++.+|.+++.|
T Consensus         2 P~~P~~~~v~-~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~-~~~~~~~~~~~~~-------~~~~~v~~L~~~~~Y   72 (98)
T d1x5ya1           2 TSAPQHLTVE-DVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEG-SEEWVPANKEPVE-------RCGFTVKDLPTGARI   72 (98)
T ss_dssp             CCCCEEEEEE-EECSSEEEEEEECCSCCCSSCCCEEEEEEEETT-CCCCEESSSSCBS-------SSEEEEECCCTTCCE
T ss_pred             CCCCcCcEEE-EccCCEEEEEEECCCcCCCCCceEEEEEEEecC-cceeEEeeeecCc-------eeEEEECCCcCCeEE
Confidence            3445444332 3567899999997   33458999999998876 6678765432222       268999999999999


Q ss_pred             EEEEEEEecCCCCCCCcc
Q psy12131        218 EASVLAKNRFGWSRPSKA  235 (245)
Q Consensus       218 ~~~v~a~N~~G~~~~s~~  235 (245)
                      .|||.|.|..|.|.+|..
T Consensus        73 ~frV~A~n~~G~s~~s~~   90 (98)
T d1x5ya1          73 LFRVVGVNIAGRSEPATL   90 (98)
T ss_dssp             EEEEEEEETTEECCCCCC
T ss_pred             EEEEEEECCCcCCCCcCC
Confidence            999999999999987754

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=2.4e-13  Score=84.21  Aligned_cols=81  Identities=22%  Similarity=0.527  Sum_probs=60.0

Q ss_pred             EecCCCeEEEEEEEe-ecCCCeEEEEECCEEeccCCcEE--------EEecCceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         60 HTAPDMRAEIICNVY-ANPPAKVEWFRDGTAITLGGRID--------MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~-~~~~~~~~w~~~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      .+..|+.+.|.|.+. |.|.+.+.|++++..+.......        .......+.|.|.++...|.|.|+|.|.|..|.
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   92 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT   92 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence            467899999999984 79999999999998775443221        122234558999999999999999999999987


Q ss_pred             eEE--EEEEEec
Q psy12131        131 SQQ--FIQLSGI  140 (245)
Q Consensus       131 ~~~--~~~~~~~  140 (245)
                      ...  .+.+.+.
T Consensus        93 ~~~s~~v~l~V~  104 (110)
T d1f97a2          93 AMRSEAAHMDAV  104 (110)
T ss_dssp             CEECCCEEEEEE
T ss_pred             EEEEEEEEEEEE
Confidence            654  4444443

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.3e-12  Score=78.27  Aligned_cols=80  Identities=21%  Similarity=0.177  Sum_probs=64.6

Q ss_pred             ccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        152 RLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       152 ~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      .....++.|.|.+  ..+.++..|.++|+... ...|..... ..         ..+.+.+|.+++.|.|+|.|.|..|.
T Consensus        11 ~~s~~si~l~W~~p~~~~~~i~~Y~v~~~~~~-~~~~~~~~~-~~---------~~~~i~~L~p~t~Y~~~V~A~n~~G~   79 (93)
T d1x4xa1          11 CRSATCAQVNWEVPLSNGTDVTEYRLEWGGVE-GSMQICYCG-PG---------LSYEIKGLSPATTYYCRVQALSVVGA   79 (93)
T ss_dssp             EEETTEEEEECCCCSCSSSCCCEEEEEEESST-TSCCEEEEE-SC---------SEEEEESCCSSCEEEEEEEEECSSCC
T ss_pred             EeCCCeEEEEEEecccCCCeeEEEEEEEccCC-CcceEeecC-Cc---------cEEEEcccceeeEEEEEEEEEECCcC
Confidence            3567899999997  34568899999998864 444443322 11         67899999999999999999999999


Q ss_pred             CCCCcceEEecCC
Q psy12131        230 SRPSKAYVFATEG  242 (245)
Q Consensus       230 ~~~s~~~~~~t~~  242 (245)
                      |.+|..+.++|++
T Consensus        80 s~~S~~~~~~Tpp   92 (93)
T d1x4xa1          80 GPFSEVVACVTPP   92 (93)
T ss_dssp             CCBCCCEEEECCC
T ss_pred             cCCCCcEEEEeCC
Confidence            9999999999975

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.3e-12  Score=80.36  Aligned_cols=94  Identities=19%  Similarity=0.236  Sum_probs=71.3

Q ss_pred             CCCCccccCccccCCCeeEEEEEe---CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceE
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQV---DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY  217 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y  217 (245)
                      |.+|..... ......++.|+|.+   +.++++..|.+.|+... ...|..........       ..+.+.+|.+++.|
T Consensus        11 P~~P~~l~~-~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~L~p~t~Y   81 (107)
T d1x5fa1          11 PSAPRDVVA-SLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEG-IARERVENTSHPGE-------MQVTIQNLMPATVY   81 (107)
T ss_dssp             CCCCEEEEE-EEECSSCEEEEEECCSSCSSCCSSEEEEEEEETT-CCCCEEEECSSTTC-------SEEEECSCCTTCEE
T ss_pred             CcCCCccEE-EEecCCEEEEEEECCccCCCCceEEEEEEEEeCC-CCceEEEEEeCCCc-------cEEEecCCCCCCEE
Confidence            455544333 24667899999997   34567899999998865 34444433333322       78999999999999


Q ss_pred             EEEEEEEecCCCCCCCcceEEecCCC
Q psy12131        218 EASVLAKNRFGWSRPSKAYVFATEGA  243 (245)
Q Consensus       218 ~~~v~a~N~~G~~~~s~~~~~~t~~~  243 (245)
                      .|+|.|.|..|.|.+|..+.++|.+.
T Consensus        82 ~~rV~A~n~~G~g~~S~~i~v~T~~e  107 (107)
T d1x5fa1          82 IFRVMAQNKHGSGESSAPLRVETQPE  107 (107)
T ss_dssp             EEEEEEECSSCEEEECCCEEEECCCC
T ss_pred             EEEEEEEeCCCCcCCCCCEEEECCCC
Confidence            99999999999999999999999874

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.2e-13  Score=82.35  Aligned_cols=93  Identities=23%  Similarity=0.338  Sum_probs=70.1

Q ss_pred             cCCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceE
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY  217 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y  217 (245)
                      .|.+|...... ....+++.|.|.+  +++.++..|.++++.......+........         ..+.+.+|.+++.|
T Consensus        10 ~P~~P~~~~~~-~~~~~sv~l~W~pp~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~L~p~t~Y   79 (105)
T d1x3da1          10 EPDIPNPPRIA-NRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQ---------KQFKITKLSPAMGC   79 (105)
T ss_dssp             CCCCCCCCEEE-EEETTEEEEECCCCCCCSSCEEEEEEEECTTTSSSCCEEEEEESC---------SEEEEESCCTTCEE
T ss_pred             CCcCCCCCEEE-EccCCEEEEEEECCCCCcCccEEEEEEEecCCCcceeEEEecCCc---------cEEEecCCcCCcEE
Confidence            34445444332 3677899999998  455789999999887653333333332222         67999999999999


Q ss_pred             EEEEEEEecCCCCCCCcceEEecCC
Q psy12131        218 EASVLAKNRFGWSRPSKAYVFATEG  242 (245)
Q Consensus       218 ~~~v~a~N~~G~~~~s~~~~~~t~~  242 (245)
                      .|||+|.|..|.|.+|+.+.+.|.+
T Consensus        80 ~frV~A~N~~G~s~~S~~~~~~T~g  104 (105)
T d1x3da1          80 KFRLSARNDYGTSGFSEEVLYYTSG  104 (105)
T ss_dssp             EEECCEEESSCBCCCCCCEEEECSC
T ss_pred             EEEEEEECCCeEcCCCCcEEEECCC
Confidence            9999999999999999999999976

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=5.6e-12  Score=78.94  Aligned_cols=85  Identities=20%  Similarity=0.222  Sum_probs=69.9

Q ss_pred             ccCCCeeEEEEEeC-CCCCceEEEEEEEeec---CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecC
Q psy12131        152 RLGPDGYRLVWQVD-TYSGIIQYLLKFRERE---ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF  227 (245)
Q Consensus       152 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~  227 (245)
                      .....++.|+|.++ .+.++.+|.+.|+...   ....|....+.....       ..+.|.+|.+++.|.|+|.|.|..
T Consensus        26 ~~s~tsi~v~W~~p~~~~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~~~-------~s~~i~~L~p~t~Y~f~V~A~n~~   98 (120)
T d1ujta_          26 VLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTE-------RSAVLVNLKKGVTYEIKVRPYFNE   98 (120)
T ss_dssp             CCBTTEEEEEEEESSCCSSCCEEEEEEEESSSSSTTTCCEEEECCCTTC-------CEEEEESCCSSEEEEEEEEEESSS
T ss_pred             EeCCCeEEEEecCCCCCCcEEEEEEEeeecccCCCCcceEEEEeccCce-------eEEEECCCCCCCEEEEEEEEEeCC
Confidence            46678999999984 3468899999998775   334677666544432       679999999999999999999999


Q ss_pred             CCCCCCcceEEecCCC
Q psy12131        228 GWSRPSKAYVFATEGA  243 (245)
Q Consensus       228 G~~~~s~~~~~~t~~~  243 (245)
                      |.|..|+.+.++|.+.
T Consensus        99 G~G~~S~~~~~~T~e~  114 (120)
T d1ujta_          99 FQGMDSESKTVRTTEE  114 (120)
T ss_dssp             CCCCCCCCEEEEECSS
T ss_pred             cCcCCCCCEEEEeCCC
Confidence            9999999999999874

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.41  E-value=1e-13  Score=85.02  Aligned_cols=78  Identities=15%  Similarity=0.258  Sum_probs=61.0

Q ss_pred             ceEEecCCCeEEEEEEE-eecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEE
Q psy12131         57 QWIHTAPDMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF  134 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~  134 (245)
                      ..+.+.+|+.+.|.|.+ .+.|.|.+.|++++..+.......+........|.|.++..+|.|.|+|.|.|..|.....
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS   90 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEEE
Confidence            45678899999999997 6889999999999876543332222223344579999999999999999999988876654

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.1e-13  Score=81.96  Aligned_cols=92  Identities=21%  Similarity=0.281  Sum_probs=70.9

Q ss_pred             cCCCCccccCccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEE
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEA  219 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~  219 (245)
                      .|.+|..... ......++.|+|.++.+.++.+|.+.|+... ...|........         .++.+.+|.+++.|.|
T Consensus        10 vP~~P~~~~~-~~~~~~si~l~W~~p~~~~i~~Y~i~y~~~~-~~~~~~~~~~~~---------~~~~i~~L~p~t~Y~~   78 (102)
T d1x5za1          10 VPGQPLNFKA-EPESETSILLSWTPPRSDTIANYELVYKDGE-HGEEQRITIEPG---------TSYRLQGLKPNSLYYF   78 (102)
T ss_dssp             CCCCCEEEEE-ECSSSSEEEEEEECCSCCCCCEEEECBEESS-SCCCBCCEECSS---------SEEEEECCCTTCEEEE
T ss_pred             CCcCCCCeEE-EEccCCEEEEEEECCCCCCccceEEEEEeCC-CCceEEEEcCCc---------CEEEECCCCCCCEEEE
Confidence            3455543333 2356779999999977778999999998865 344433333222         5789999999999999


Q ss_pred             EEEEEecCCCCCCCcceEEecCC
Q psy12131        220 SVLAKNRFGWSRPSKAYVFATEG  242 (245)
Q Consensus       220 ~v~a~N~~G~~~~s~~~~~~t~~  242 (245)
                      +|.|.|..|.|.+|..+.++|..
T Consensus        79 ~V~A~n~~G~g~~S~~v~~~T~e  101 (102)
T d1x5za1          79 RLAARSPQGLGASTAEISARTMQ  101 (102)
T ss_dssp             CEEEECSSCEEEECCCEEEECCC
T ss_pred             EEEEEcCCCEeCCCCCEEEEcCC
Confidence            99999999999999999999875

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.41  E-value=4.2e-13  Score=81.57  Aligned_cols=94  Identities=22%  Similarity=0.372  Sum_probs=67.0

Q ss_pred             EecCCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCc
Q psy12131        138 SGIPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFT  215 (245)
Q Consensus       138 ~~~~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~  215 (245)
                      ...|.+|......  ...+++.|+|.+  +++.++.+|.++|+.......|..........       ..+.+.+|.+++
T Consensus         3 ~dvP~~P~~~~v~--~~~~sv~lsW~pp~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~L~p~t   73 (100)
T d1cfba1           3 QDVPNAPKLTGIT--CQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNT-------DSSFVVQMSPWA   73 (100)
T ss_dssp             CCCCCCCEEEEEE--ECSSEEEEEEECCCCTTSCCCEEEEEEEESSSTTCCEEEEEEEETT-------CSEEEEECCSSE
T ss_pred             ccCCCcCcCcEEE--EcCCEEEEEEcCCcccccceEEEEEEEecCCCCceeeEEeeecCCc-------eEEEEecCCCCC
Confidence            3467777766542  456789999998  44578999999999865333333332211111       567888999999


Q ss_pred             eEEEEEEEEecCCCCCCCcce-EEec
Q psy12131        216 QYEASVLAKNRFGWSRPSKAY-VFAT  240 (245)
Q Consensus       216 ~y~~~v~a~N~~G~~~~s~~~-~~~t  240 (245)
                      .|.|+|.|.|..|.|.+|... .++|
T Consensus        74 ~Y~frV~A~n~~G~g~~S~~s~~vtT   99 (100)
T d1cfba1          74 NYTFRVIAFNKIGASPPSAHSDSCTT   99 (100)
T ss_dssp             EEEEEEEEEETTEECCCCCCCCCEEE
T ss_pred             EEEEEEEEEeCCcCCCCcCCCcCEEe
Confidence            999999999999999988753 3444

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1e-12  Score=79.11  Aligned_cols=83  Identities=20%  Similarity=0.319  Sum_probs=66.3

Q ss_pred             eEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeE-EEEE
Q psy12131         58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQ  136 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~~  136 (245)
                      ...+.+|+.+.|.|.+.+ +.+.+.|++++..+....+..+..  ....|.|.++..+|.|.|+|.|.|..|... ..+.
T Consensus        12 ~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~--~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~   88 (96)
T d1l6za2          12 NTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQ--NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIK   88 (96)
T ss_dssp             CSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEET--TTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCE
T ss_pred             ceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccC--CceEEEEeccchhhceEEEEEEEeCCCCeEEEeEE
Confidence            445789999999999865 568999999999998877776644  345799999999999999999999988664 3566


Q ss_pred             EEecCCC
Q psy12131        137 LSGIPNI  143 (245)
Q Consensus       137 ~~~~~~~  143 (245)
                      |.+...|
T Consensus        89 L~V~~~P   95 (96)
T d1l6za2          89 LDIIFDP   95 (96)
T ss_dssp             EEECCSC
T ss_pred             EEEEcCC
Confidence            6665433

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=8e-13  Score=80.88  Aligned_cols=86  Identities=14%  Similarity=0.120  Sum_probs=62.2

Q ss_pred             eecceEEecCCCeEEEEEEEeecCC-CeEEEEECCEEecc---CCcEEEEecC--ceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYANPP-AKVEWFRDGTAITL---GGRIDMHVSS--EKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~w~~~~~~~~~---~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      ..+....+..|+.+.|.|.+.|.|. |.+.|++++..+..   ..........  ....|.|.++..+|.|.|+|.|.|.
T Consensus         8 ~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~   87 (104)
T d2aw2a1           8 KRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQ   87 (104)
T ss_dssp             CTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             ecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcC
Confidence            3455677889999999999999984 89999997754421   1122222222  2346999999999999999999999


Q ss_pred             CceeE-EEEEEEe
Q psy12131        128 LGSSQ-QFIQLSG  139 (245)
Q Consensus       128 ~g~~~-~~~~~~~  139 (245)
                      .|... ..+.|.+
T Consensus        88 ~G~~~s~~~~l~V  100 (104)
T d2aw2a1          88 SNLIESHSTTLYV  100 (104)
T ss_dssp             TEEEECCCEEEEE
T ss_pred             CCeEEEEEEEEEE
Confidence            98743 3444443

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.40  E-value=1.8e-12  Score=76.47  Aligned_cols=74  Identities=12%  Similarity=0.321  Sum_probs=57.7

Q ss_pred             EEecCCCeEEEEEEEeec-CCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeE-EEEE
Q psy12131         59 IHTAPDMRAEIICNVYAN-PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQ  136 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~~  136 (245)
                      ..+.+|+.+.|.|.+.+. |.+.+.|++++..+....        ....|.|.++..+|.|.|.|.|.|..|... ..+.
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~--------~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~   81 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR--------SDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVT   81 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES--------SCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc--------cccccccCccCHHHCCeEEEEEEeCCCCEEeeeEE
Confidence            347799999999999654 556899999998764321        345799999999999999999999988643 4556


Q ss_pred             EEec
Q psy12131        137 LSGI  140 (245)
Q Consensus       137 ~~~~  140 (245)
                      +.+.
T Consensus        82 l~V~   85 (88)
T d2fcba2          82 ITVQ   85 (88)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            6554

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.40  E-value=4.5e-14  Score=83.76  Aligned_cols=76  Identities=16%  Similarity=0.177  Sum_probs=67.0

Q ss_pred             eecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      .+.....+.+|+++.|.|.+ +.|.|.+.|++++..+..+.++.+...+....|.|.++..+|.|.|+|.+.|..++
T Consensus         6 ~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~~s   81 (89)
T d1tiua_           6 KPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKSA   81 (89)
T ss_dssp             BCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCBCC
T ss_pred             cCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceEEE
Confidence            44567788999999999997 57889999999999999888888888888899999999999999999999886543

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=9.4e-13  Score=80.44  Aligned_cols=90  Identities=22%  Similarity=0.362  Sum_probs=69.2

Q ss_pred             CCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEE
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE  218 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  218 (245)
                      |.+|..... ......++.|+|.+  ..++++.+|.+.|+... ...|..+....          .++.+.+|.+++.|.
T Consensus        11 P~~P~~l~v-~~~s~~si~l~W~~P~~~~g~i~~Y~v~~~~~~-~~~~~~~~~~~----------~~~~i~~L~p~t~Y~   78 (103)
T d1x5ga1          11 PGPAPNLRA-YAASPTSITVTWETPVSGNGEIQNYKLYYMEKG-TDKEQDVDVSS----------HSYTINGLKKYTEYS   78 (103)
T ss_dssp             CCCCSSCEE-EEEETTEEEEECCCCSCCSSCCSEEEEEEEETT-CCCCCCEEECS----------SEEEECSCCTTCEEE
T ss_pred             cccCCCcEE-EEccCCEEEEEEECCcCCCccEEEEEEEEEeCC-CceeEEEeccc----------cEEecCCCCCCCEEE
Confidence            444443322 23567899999997  44568999999998865 44554443321          578999999999999


Q ss_pred             EEEEEEecCCCCCCCcceEEecCC
Q psy12131        219 ASVLAKNRFGWSRPSKAYVFATEG  242 (245)
Q Consensus       219 ~~v~a~N~~G~~~~s~~~~~~t~~  242 (245)
                      |+|.|.|..|.|.+|..+.++|.+
T Consensus        79 ~~V~A~n~~G~g~~S~~v~v~T~e  102 (103)
T d1x5ga1          79 FRVVAYNKHGPGVSTPDVAVRTLS  102 (103)
T ss_dssp             EEEEEECSSCCCCBCCCCCEECCC
T ss_pred             EEEEEEcCCcCcCCCCCEEEEcCC
Confidence            999999999999999999999875

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.1e-12  Score=78.71  Aligned_cols=88  Identities=23%  Similarity=0.297  Sum_probs=67.3

Q ss_pred             CCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEE
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE  218 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  218 (245)
                      |.+|.....  ....+++.|.|.+  ..++++.+|.|+|+... ...|.........        .++.+.+|.+++.|.
T Consensus         1 P~~P~~~~~--~~~~~sv~l~W~pP~~~~g~i~~Y~i~~~~~~-~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~   69 (94)
T d2dn7a1           1 PGRPTMMIS--TTAMNTALLQWHPPKELPGELLGYRLQYCRAD-EARPNTIDFGKDD--------QHFTVTGLHKGTTYI   69 (94)
T ss_dssp             CCCCEEEEE--ECSTTEEEEEEECCSSCSSCCCEEEEEEEETT-CSSCEEEEEETTC--------CEEEEECCCTTCEEE
T ss_pred             CCCCcEeEE--EEeCCEEEEEEeCCCCCCCceEEEEEEEEEcC-CCCcEEEEcCCCc--------cEEEEEccCCeeEEE
Confidence            345543322  3567899999998  34568999999998876 5667766555443        679999999999999


Q ss_pred             EEEEEEecCCCCCCCcceEEe
Q psy12131        219 ASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       219 ~~v~a~N~~G~~~~s~~~~~~  239 (245)
                      |+|.|.|..|.|.++.....+
T Consensus        70 ~~V~A~n~~G~g~~s~~~~~T   90 (94)
T d2dn7a1          70 FRLAAKNRAGLGEEFEKEIRT   90 (94)
T ss_dssp             EEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEcCCcCCCCccEEEee
Confidence            999999999999988754443

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.6e-12  Score=77.83  Aligned_cols=79  Identities=13%  Similarity=0.278  Sum_probs=63.3

Q ss_pred             CCeEEeec-ceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC-CcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         49 PPEVSVEK-QWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        49 ~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      +|.|.... ....+.+|+.+.|.|.+. .|.|.+.|++++..+... ..+.+...+....|.|.++...|.|.|+|.|.|
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n   83 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG   83 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee
Confidence            34444443 345688999999999984 588899999999988754 456677777788999999999999999999987


Q ss_pred             CC
Q psy12131        127 NL  128 (245)
Q Consensus       127 ~~  128 (245)
                      ..
T Consensus        84 ~~   85 (94)
T d1pd6a_          84 EK   85 (94)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=5.5e-12  Score=78.09  Aligned_cols=83  Identities=24%  Similarity=0.309  Sum_probs=67.4

Q ss_pred             cCCCeeEEEEEe--CCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCC
Q psy12131        153 LGPDGYRLVWQV--DTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG  228 (245)
Q Consensus       153 ~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G  228 (245)
                      ....++.|+|.+  ..++++..|.+.|+...  ....|.........        ..+.|.+|.+++.|.|+|.|.|..|
T Consensus        25 ~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~V~A~n~~G   96 (111)
T d1x5ka1          25 GKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNR--------LTHQIQELTLDTPYYFKIQARNSKG   96 (111)
T ss_dssp             SCTTCEEEEEECCSCCSSCCCEEEEEEESCSSSCTTTSEEEEESTTC--------SEEEECSCCSSSEEEEEEEEECSSC
T ss_pred             CCCCEEEEEEEccccCCCceeeeEEeeeecCCCCcceeEEEEeCCCe--------eEEEECCCCCCCEEEEEEEEEcCCC
Confidence            456789999997  34578899999998765  33446655554443        6899999999999999999999999


Q ss_pred             CCCCCcceEEecCCC
Q psy12131        229 WSRPSKAYVFATEGA  243 (245)
Q Consensus       229 ~~~~s~~~~~~t~~~  243 (245)
                      .|.+|+.+.++|..+
T Consensus        97 ~g~~S~~v~~~T~~A  111 (111)
T d1x5ka1          97 MGPMSEAVQFRTPKA  111 (111)
T ss_dssp             BCCCCCCEEEECCCC
T ss_pred             CcCCCCCEEEECCCC
Confidence            999999999999753

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.38  E-value=3.6e-12  Score=78.33  Aligned_cols=89  Identities=17%  Similarity=0.167  Sum_probs=61.8

Q ss_pred             ccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeC----CCCCCCcceeeeEEEecCCCCCceEEEEEEEEe
Q psy12131        152 RLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIP----SDGSLAGPIYTQSYNITGLQLFTQYEASVLAKN  225 (245)
Q Consensus       152 ~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N  225 (245)
                      ....+++.|.|.+  +++.++.+|.|+|+.......|......    .............++|.+|.+++.|.|||.|.|
T Consensus        10 ~~~~~sv~l~W~~P~~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~frV~A~N   89 (107)
T d2ic2a1          10 RLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVY   89 (107)
T ss_dssp             ECC---EEEEEEEECCSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECSCCSSEEEEEEEEEEE
T ss_pred             EEECCEEEEEEEeCccccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECCCcCCcEEEEEEEEEc
Confidence            3567899999998  5567999999999887655667654321    111223445568899999999999999999999


Q ss_pred             cCCCCCCCcc-eEEec
Q psy12131        226 RFGWSRPSKA-YVFAT  240 (245)
Q Consensus       226 ~~G~~~~s~~-~~~~t  240 (245)
                      ..|.|.+|.. ..|.+
T Consensus        90 ~~G~s~~S~~s~~~~~  105 (107)
T d2ic2a1          90 SNNDNKESNTSAKFYL  105 (107)
T ss_dssp             TTSCEEECCCCCCEEE
T ss_pred             CCCCCCCCCCCCCEEc
Confidence            9999887753 34433

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=6.5e-13  Score=80.12  Aligned_cols=83  Identities=24%  Similarity=0.273  Sum_probs=64.2

Q ss_pred             ccCCCeeEEEEEeC---CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCC
Q psy12131        152 RLGPDGYRLVWQVD---TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG  228 (245)
Q Consensus       152 ~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G  228 (245)
                      .....++.|.|.++   ++.++..|.++++... ...|.........        ..+.+.+|.+++.|.|+|.|.|..|
T Consensus        11 ~~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~--------~~~~v~~L~p~t~Y~~rV~A~n~~G   81 (96)
T d1x5xa1          11 KAGITWLSLQWSKPSGTPSDEGISYILEMEEET-SGYGFKPKYDGED--------LAYTVKNLRRSTKYKFKVIAYNSEG   81 (96)
T ss_dssp             EECSSEEEEECCCCSSCCSSSSCEEEEEECCSS-SSCCCEEEEEESC--------SEEEEESCCSSCEEEEEEEEECSSC
T ss_pred             EecCCEEEEEEEeecccCcceEeeeEEEeeecc-ceeeeEEeecCCC--------CEEEECCCCCCCEEEEEEEEEcCCc
Confidence            35678999999972   2346788888887754 4444433332222        6799999999999999999999999


Q ss_pred             CCCCCcceEEecCCC
Q psy12131        229 WSRPSKAYVFATEGA  243 (245)
Q Consensus       229 ~~~~s~~~~~~t~~~  243 (245)
                      .|.+|..+.++|.+.
T Consensus        82 ~s~~S~~~~~~T~pd   96 (96)
T d1x5xa1          82 KSNPSEVVEFTTCPD   96 (96)
T ss_dssp             EEEECCCEEEECCCC
T ss_pred             EeCCCCCEEEEeCcC
Confidence            999999999999763

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.1e-14  Score=86.86  Aligned_cols=87  Identities=22%  Similarity=0.442  Sum_probs=64.3

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEE-eecCCCeEEEEECCEEeccCCcEEEE-------ecCceeEEEEccCCCCCCeEE
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNV-YANPPAKVEWFRDGTAITLGGRIDMH-------VSSEKHSLLVRHIKDTDFGNY  120 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~w~~~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~g~y  120 (245)
                      ||.+........+..|+.+.|.|.+ .|.|.|.+.|++++..+.........       .....+.|.|.++...|.|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            4554443334457789999999998 57999999999999877654322211       112245789999999999999


Q ss_pred             EEEEEeCCceeEEEE
Q psy12131        121 MCQASNNLGSSQQFI  135 (245)
Q Consensus       121 ~C~~~n~~g~~~~~~  135 (245)
                      +|.|.|..|....+.
T Consensus        82 ~C~a~N~~G~~~~s~   96 (104)
T d1nbqa2          82 SCEARNGYGTPMTSN   96 (104)
T ss_dssp             EEEEECSSSCCEECC
T ss_pred             EEEEEECCCceEEEE
Confidence            999999999776543

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=5.4e-12  Score=74.97  Aligned_cols=79  Identities=25%  Similarity=0.574  Sum_probs=65.2

Q ss_pred             CCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12131        154 GPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS  233 (245)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s  233 (245)
                      ..+++.|.|.++...++.+|.|.|+.......|..+.++...        ..+.|.+|.+++.|.|+|.|.|..|.|+.+
T Consensus        14 ~~~s~~vsW~~P~~~~i~~Y~i~y~~~~~~~~~~~~~v~~~~--------~~~~l~gL~P~t~Y~v~v~av~~~G~s~~~   85 (93)
T d1owwa_          14 QPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHL--------NSYTIKGLKPGVVYEGQLISIQQYGHQEVT   85 (93)
T ss_dssp             CTTCEEEEEECCSSSCEEEEEEEEEETTCSSCCEEEEECSSC--------CEEEECSCCSSEEEEEEEEEEESSSCEEEE
T ss_pred             CCCEEEEEeecccccceeEEEEEEeeccccceeeeeccCCCc--------cEEEECCcccCcEEEEEEEEEeCCCccCcE
Confidence            457999999986666899999999987645567777665544        789999999999999999999999999887


Q ss_pred             cceEEecC
Q psy12131        234 KAYVFATE  241 (245)
Q Consensus       234 ~~~~~~t~  241 (245)
                       .+.|+|.
T Consensus        86 -~~~~tT~   92 (93)
T d1owwa_          86 -RFDFTTT   92 (93)
T ss_dssp             -EEEEEEC
T ss_pred             -EEEEEec
Confidence             4666664

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.37  E-value=6.3e-12  Score=75.46  Aligned_cols=77  Identities=18%  Similarity=0.198  Sum_probs=60.6

Q ss_pred             cccCCCeeEEEEEeC---CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecC
Q psy12131        151 RRLGPDGYRLVWQVD---TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF  227 (245)
Q Consensus       151 ~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~  227 (245)
                      ......++.|.|.++   .+.++.+|.|.|+.......|....+.....       ..+.|.+|.+++.|.|+|.|.|..
T Consensus        16 ~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~~~~-------~~~~i~~L~p~t~Y~~~V~A~n~~   88 (95)
T d2ibga1          16 EEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHA-------RSFKIAPLETATMYEFKLQSFSAA   88 (95)
T ss_dssp             BCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTTC-------CEEEECSCCTTCEEEEEEEEECSS
T ss_pred             EEeCCCEEEEEEEeeeeccCCcccccceeEeeeeecceeeeeeccCCce-------eEEEEeeccCCeEEEEEEEEEeCC
Confidence            346678999999962   3456899999999876455666555433332       789999999999999999999999


Q ss_pred             CCCCCCc
Q psy12131        228 GWSRPSK  234 (245)
Q Consensus       228 G~~~~s~  234 (245)
                      |.|++|.
T Consensus        89 G~s~~Ss   95 (95)
T d2ibga1          89 SASEFSA   95 (95)
T ss_dssp             CBCCCCC
T ss_pred             ccCCCCC
Confidence            9999874

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3e-12  Score=75.69  Aligned_cols=74  Identities=19%  Similarity=0.252  Sum_probs=56.7

Q ss_pred             EEecCCCeEEEEEEEeecC-CCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeE-EEEE
Q psy12131         59 IHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQ  136 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~~  136 (245)
                      ..+.+|+.+.|.|.+.+.+ ...+.|++++..+....        ....|.|.+++.+|.|.|.|.+.|..+... ..+.
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~--------~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~   81 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLN   81 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc--------ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEE
Confidence            3467999999999997654 45899999998876432        234799999999999999999999887643 3344


Q ss_pred             EEec
Q psy12131        137 LSGI  140 (245)
Q Consensus       137 ~~~~  140 (245)
                      +.+.
T Consensus        82 i~V~   85 (89)
T d1f2qa2          82 ITVI   85 (89)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.3e-14  Score=88.97  Aligned_cols=97  Identities=26%  Similarity=0.447  Sum_probs=74.3

Q ss_pred             EEEecCCeEEeecceEEecCCCeEEEEEEEeecC-CCeEEEEECCEEeccC--CcEEEEe----cCceeEEEEccCCCCC
Q psy12131         44 VNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRDGTAITLG--GRIDMHV----SSEKHSLLVRHIKDTD  116 (245)
Q Consensus        44 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~w~~~~~~~~~~--~~~~~~~----~~~~~~l~i~~~~~~d  116 (245)
                      |.|..||.+.. +....+.+|+.+.|.|.+.+.+ .+.+.|++++..+...  .++.+..    .+..+.|.|.++...|
T Consensus         2 L~V~~Pp~i~~-~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D   80 (115)
T d2crya1           2 LTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRAD   80 (115)
T ss_dssp             CCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHH
T ss_pred             eEEecCCEEec-CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhc
Confidence            56778888764 4456678999999999999864 5589999998877543  2333221    2223579999999998


Q ss_pred             -CeEEEEEEEeCCceeEEEEEEEecC
Q psy12131        117 -FGNYMCQASNNLGSSQQFIQLSGIP  141 (245)
Q Consensus       117 -~g~y~C~~~n~~g~~~~~~~~~~~~  141 (245)
                       .|.|+|.|.|..|.....+.|.+..
T Consensus        81 ~~G~Y~C~A~N~~G~~~~~~~L~V~~  106 (115)
T d2crya1          81 FQTIYNCTAWNSFGSDTEIIRLKEQG  106 (115)
T ss_dssp             HHSCEEEEEECSSCEEEEEECCCCSC
T ss_pred             CCeEEEEEEEECCCeEEEEEEEEEEC
Confidence             6999999999999999998887753

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=5.4e-13  Score=81.39  Aligned_cols=85  Identities=15%  Similarity=0.293  Sum_probs=63.1

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEec----cC--------CcEEEEecCceeEEEEccCCCCCC
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAIT----LG--------GRIDMHVSSEKHSLLVRHIKDTDF  117 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~----~~--------~~~~~~~~~~~~~l~i~~~~~~d~  117 (245)
                      |.+..++..+.+.+|+++.|.|.+.|.|.|.+.|++.+....    ..        .+...    ..++|.|.++..+|.
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~tL~I~~v~~~D~   77 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF----SSSGITFSSVTRKDN   77 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE----ETTEEEESCCCGGGC
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEe----cCCEEEEeECCccCC
Confidence            556666777888999999999999999999999997432111    00        11111    124799999999999


Q ss_pred             eEEEEEEEeCCceeEEEEEEE
Q psy12131        118 GNYMCQASNNLGSSQQFIQLS  138 (245)
Q Consensus       118 g~y~C~~~n~~g~~~~~~~~~  138 (245)
                      |.|.|.+.|..|.....+.+.
T Consensus        78 G~Y~C~a~n~~g~~~~~~~v~   98 (102)
T d1f97a1          78 GEYTCMVSEEGGQNYGEVSIH   98 (102)
T ss_dssp             EEEEEEEEETTSSSEEEEEEE
T ss_pred             EEEEEEEEECCCCEEEEEEEE
Confidence            999999999998866554443

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=9e-13  Score=79.31  Aligned_cols=83  Identities=20%  Similarity=0.286  Sum_probs=65.3

Q ss_pred             ccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        152 RLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       152 ~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      ....+++.|.|.+  ..++++..|.+.++... ...|.........        ..+.+.+|.+++.|.|+|.|.|..|.
T Consensus        11 ~~t~~si~l~W~~p~~~~g~i~~Y~v~~~~~~-~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~V~A~n~~G~   81 (95)
T d2djsa1          11 SATMRSITLSWPQPEQPNGIILDYEIRYYEKE-HNEFNSSMARSQT--------NTARIDGLRPGMVYVVQVRARTVAGY   81 (95)
T ss_dssp             EECSSEEEEECCCCSCCSSCEEEEEEEEEETT-SCSTTCEEEEESS--------SEEEEESCCTTCEEEEEEEEEESSCE
T ss_pred             eecCCEEEEEEEECCCCCcceEEeeeeeeeec-cCcceeEeecCCc--------cEEEEeecCCccEEEEEEEEEcCCCC
Confidence            4677899999997  34578999999998876 2223222222121        67899999999999999999999999


Q ss_pred             CCCCcceEEecCCC
Q psy12131        230 SRPSKAYVFATEGA  243 (245)
Q Consensus       230 ~~~s~~~~~~t~~~  243 (245)
                      |.+|..+.++|.+.
T Consensus        82 g~~S~~~~~~T~~d   95 (95)
T d2djsa1          82 GKFSGKMCFQTLTD   95 (95)
T ss_dssp             EEECCCEEEECCCS
T ss_pred             CCCCCCEEEEeCCC
Confidence            99999999999863

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.36  E-value=2e-12  Score=76.39  Aligned_cols=73  Identities=11%  Similarity=0.216  Sum_probs=55.4

Q ss_pred             EEecCCCeEEEEEEEee-cCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeE-EEEE
Q psy12131         59 IHTAPDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ-QFIQ  136 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~-~~~~  136 (245)
                      ..+.+|+.+.|.|.+.+ .|.+.+.|++++..+....        ....|.|.++..+|.|.|.|.+.|..|... ..+.
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~--------~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~   83 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH--------HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVN   83 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE--------ECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEcccccceec--------cccccEECccceeccceEEEEEEeCCCCeEEeeEE
Confidence            34679999999999864 4556899999998764321        234689999999999999999999887643 3444


Q ss_pred             EEe
Q psy12131        137 LSG  139 (245)
Q Consensus       137 ~~~  139 (245)
                      +.+
T Consensus        84 itV   86 (89)
T d1fnla2          84 ITI   86 (89)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.4e-13  Score=83.52  Aligned_cols=88  Identities=17%  Similarity=0.234  Sum_probs=62.3

Q ss_pred             eEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcE--EEEec------CceeEEEEccCCCCCCeEEEE
Q psy12131         51 EVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI--DMHVS------SEKHSLLVRHIKDTDFGNYMC  122 (245)
Q Consensus        51 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~------~~~~~l~i~~~~~~d~g~y~C  122 (245)
                      .+...+..+.+.+|+++.|.|.+.|.|.|.+.|++++..+......  .....      ...+.|.|.++..+|.|.|.|
T Consensus         6 ~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   85 (105)
T d1nbqa1           6 TVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTC   85 (105)
T ss_dssp             EEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEE
T ss_pred             EEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEE
Confidence            3344455667889999999999999999999999865332211110  00000      012479999999999999999


Q ss_pred             EEEeCCceeEEEEEEE
Q psy12131        123 QASNNLGSSQQFIQLS  138 (245)
Q Consensus       123 ~~~n~~g~~~~~~~~~  138 (245)
                      .+.|..|.....+.+.
T Consensus        86 ~a~n~~G~~~~~~~v~  101 (105)
T d1nbqa1          86 MVSEEGGNSYGEVKVK  101 (105)
T ss_dssp             EEEETTSSCEECCEEE
T ss_pred             EEEECCCCEEEEEEEE
Confidence            9999999877655544

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=5e-12  Score=77.73  Aligned_cols=87  Identities=22%  Similarity=0.291  Sum_probs=64.5

Q ss_pred             CCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEee--CCCCCCCcceeeeEEEecCCCCCce
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVI--PSDGSLAGPIYTQSYNITGLQLFTQ  216 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~  216 (245)
                      |.+|..... ......++.|.|.+  +++.++.+|.|+|+.......|.....  ....        ..+.+.+|.+++.
T Consensus        11 P~~P~~~~v-~~~~~~sv~l~W~p~~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~L~p~t~   81 (108)
T d1x4za1          11 PEAPDRPTI-STASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSR--------LSVEITGLEKGIS   81 (108)
T ss_dssp             CCCCCCCEE-EECCSSEEEEECCCCCCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTC--------CEEEEESCCTTCE
T ss_pred             CccCCCCEE-EEccCCEEEEEEECCCCCCCccEEEEEEEEecCCCCceEEEEEeecCCc--------cEEEECCCCCCCE
Confidence            444443332 24567899999987  445689999999998764556654432  2222        6799999999999


Q ss_pred             EEEEEEEEecCCCCCCCcce
Q psy12131        217 YEASVLAKNRFGWSRPSKAY  236 (245)
Q Consensus       217 y~~~v~a~N~~G~~~~s~~~  236 (245)
                      |.|||.|.|..|.|.+|..-
T Consensus        82 Y~frV~A~N~~G~s~~S~pS  101 (108)
T d1x4za1          82 YKFRVRALNMLGESEPSAPS  101 (108)
T ss_dssp             EEEEEEEEETTEECCCCCCC
T ss_pred             EEEEEEEECCCcCCCCCCCC
Confidence            99999999999999887743

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.4e-12  Score=81.62  Aligned_cols=95  Identities=23%  Similarity=0.379  Sum_probs=70.3

Q ss_pred             cCCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceE
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY  217 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y  217 (245)
                      .|.+|...... ....+++.|.|.+  ..++++.+|.|.|+.......|..........       ..+.+.+|.+++.|
T Consensus        20 ~P~~P~~~~~~-~~~~~sv~v~W~~P~~~~g~i~~Y~i~y~~~~~~~~~~~~~~~~~~~-------~~~~i~~L~p~t~Y   91 (117)
T d1wfoa1          20 VPGPPMGILFP-EVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSA-------RQYTATGLKPESVY   91 (117)
T ss_dssp             CCCCCCCCEEE-EECSSEEEEECCCCSCCCSCCCEEEEEEEESSCCCSCCCEEEECTTC-------CEEEEESCCSSSEE
T ss_pred             CCcCCCCcEEE-EecCCEEEEEEECCCCCCCceEEEeeeeeeccCCCceEeEEecCCce-------EEEEECCCCCCCEE
Confidence            35555544332 3567899999997  33568999999998876333343332222221       68999999999999


Q ss_pred             EEEEEEEecCCCCCCCcceEEecCC
Q psy12131        218 EASVLAKNRFGWSRPSKAYVFATEG  242 (245)
Q Consensus       218 ~~~v~a~N~~G~~~~s~~~~~~t~~  242 (245)
                      .|+|.|.|..|.|.+|..+.++|..
T Consensus        92 ~~~V~A~n~~G~g~~S~~~~~tT~e  116 (117)
T d1wfoa1          92 LFRITAQTRKGWGEAAEALVVTTEK  116 (117)
T ss_dssp             EEEEEEECSSCEEEEEEEEEECCSS
T ss_pred             EEEEEEECCCcCCCCcCCEEEECCC
Confidence            9999999999999999999888864

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.35  E-value=2e-12  Score=75.79  Aligned_cols=78  Identities=21%  Similarity=0.464  Sum_probs=61.7

Q ss_pred             CeEEeecceEEecCCCeEEEEEEEeecCCC-eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         50 PEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        50 p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      |.+...|....+.+|+.+.|.|.+.+.+.+ .+.|++++..+...          ...|.|..+..+|.|.|.|.+.|..
T Consensus         5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~----------~~~l~i~~v~~~dsG~Y~C~a~ns~   74 (85)
T d2fcba1           5 AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH----------TQPSYRFKANNNDSGEYTCQTGQTS   74 (85)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC----------CSSEEEEECCGGGCEEEEEECTTSB
T ss_pred             CEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc----------ccceEEeeccccCCcEEEEECCCCc
Confidence            445566666678899999999999888776 68899999887653          2368899999999999999999876


Q ss_pred             ceeEEEEEE
Q psy12131        129 GSSQQFIQL  137 (245)
Q Consensus       129 g~~~~~~~~  137 (245)
                      ++....+++
T Consensus        75 ~S~~v~l~V   83 (85)
T d2fcba1          75 LSDPVHLTV   83 (85)
T ss_dssp             CCCCEEEEE
T ss_pred             ccccEEEEE
Confidence            665555444

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.34  E-value=3.6e-12  Score=74.49  Aligned_cols=77  Identities=21%  Similarity=0.361  Sum_probs=60.1

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCe-EEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAK-VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      +|.+...|....+.+|++++|.|.+.+.+.+. +.|++++..+...          ...|.|.++..+|.|.|+|.+.|.
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~i~~~~~~d~G~Y~C~a~~s   74 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ----------ASSYFIDAATVNDSGEYRCQTNLS   74 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS----------CSEEEESSCCGGGCEEEEEECSSS
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec----------ceeeEecCCcccCCEEEEEEccCC
Confidence            45666667667788999999999999988874 6677888766543          346999999999999999999887


Q ss_pred             CceeEEEE
Q psy12131        128 LGSSQQFI  135 (245)
Q Consensus       128 ~g~~~~~~  135 (245)
                      .++....+
T Consensus        75 ~~S~~v~L   82 (84)
T d1fnla1          75 TLSDPVQL   82 (84)
T ss_dssp             CCCCCEEE
T ss_pred             CccccEEE
Confidence            65444333

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=1.7e-11  Score=73.16  Aligned_cols=78  Identities=23%  Similarity=0.303  Sum_probs=62.2

Q ss_pred             ccCCCeeEEEEEeC---CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCC
Q psy12131        152 RLGPDGYRLVWQVD---TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG  228 (245)
Q Consensus       152 ~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G  228 (245)
                      .....++.|+|.+.   ....++.|.+.+....  ..|.... . .         .+++|.+|.+++.|.|+|.|.|..|
T Consensus        13 ~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~--~~~~~~~-~-~---------t~~~i~~L~p~t~Y~~rV~A~n~~G   79 (94)
T d1x5aa1          13 KKEPRQLELTWAGSRPRNPGGNLSYELHVLNQD--EEWHQMV-L-E---------PRVLLTKLQPDTTYIVRVRTLTPLG   79 (94)
T ss_dssp             EEETTEEEEECCCCCSSCCSSCCEEEEEEECSS--CEEEEEE-S-S---------SEEEEESCCSSCEEEEEEEEECSSS
T ss_pred             EcCCCEEEEEEecccCCCCCcEEEEEEEEecCC--ceEEEee-c-c---------CEEEECCCCCCCEEEEEEEEEcCCc
Confidence            46678999999972   3356678999998743  3333332 1 1         6789999999999999999999999


Q ss_pred             CCCCCcceEEecCC
Q psy12131        229 WSRPSKAYVFATEG  242 (245)
Q Consensus       229 ~~~~s~~~~~~t~~  242 (245)
                      .|.+|..+.++|.+
T Consensus        80 ~g~~S~~~~~~T~P   93 (94)
T d1x5aa1          80 PGPFSPDHEFRTSP   93 (94)
T ss_dssp             CCCCCCCEEEECCC
T ss_pred             CcCCCCCEEEEeCC
Confidence            99999999999975

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=7.6e-12  Score=74.63  Aligned_cols=80  Identities=19%  Similarity=0.194  Sum_probs=62.7

Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      .....++.|.|.++. ..+.+|.+.|+... ...+........        ...+.+.+|.+++.|.|+|.|.|..|.|.
T Consensus        12 ~~s~~si~l~W~~p~-~~~~~Y~i~y~~~~-~~~~~~~~~~~~--------~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~   81 (92)
T d1qg3a1          12 AAGSRKIHFNWLPPS-GKPMGYRVKYWIQG-DSESEAHLLDSK--------VPSVELTNLYPYCDYEMKVCAYGAQGEGP   81 (92)
T ss_dssp             ECSTTCEEEEEECCS-SCCCEEEEEEEETT-SCGGGCEEEEES--------SSEEEECSCCTTCEEEEEEEEECSSCBCC
T ss_pred             EccCCEEEEEEEecC-CCccceEEeeeecc-ccccEEEEecCC--------ccEEEECCCCCCcEEEEEEEEEeCCcCcC
Confidence            367789999999853 46789999998865 222222222222        26799999999999999999999999999


Q ss_pred             CCcceEEecC
Q psy12131        232 PSKAYVFATE  241 (245)
Q Consensus       232 ~s~~~~~~t~  241 (245)
                      +|..+.++|.
T Consensus        82 ~S~~~~~~T~   91 (92)
T d1qg3a1          82 YSSLVSCRTH   91 (92)
T ss_dssp             CCCCEEEECC
T ss_pred             CCCCEEEEcC
Confidence            9999999986

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.5e-11  Score=74.18  Aligned_cols=82  Identities=13%  Similarity=0.075  Sum_probs=64.3

Q ss_pred             cCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        153 LGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       153 ~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      ...+.+.|+|.+  ..+..++.|.|.|+.......|.........       ...+.|.+|.+++.|.|+|+|.|..|.|
T Consensus        18 ~~~~~v~l~W~pp~~~~~~~~~y~i~y~~~~~~~~~~~~~~~~~~-------~~~~~i~~L~p~t~Y~frVra~n~~g~G   90 (105)
T d2d9qb2          18 PQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLE-------ALQYELCGLLPATAYTLQIRCIRWPLPG   90 (105)
T ss_dssp             -CCSCEEEEEECCGGGTTSCEEEEEEEEESSSCCCCEEEEEECSC-------EEEEEECSCCSCCCEEEEEEEEECSSCC
T ss_pred             CCCCeEEEEEcCCCCCCceeEEEEEEEEecCCccceeeeecccCC-------cceeEEecccCCeEEEEEEEEEeCCCCC
Confidence            457789999998  3456788999999987656677765543332       2789999999999999999999999985


Q ss_pred             ---CCCcceEEecC
Q psy12131        231 ---RPSKAYVFATE  241 (245)
Q Consensus       231 ---~~s~~~~~~t~  241 (245)
                         ++|..+.++|.
T Consensus        91 ~~S~wS~~~~~~t~  104 (105)
T d2d9qb2          91 HWSDWSPSLELRTT  104 (105)
T ss_dssp             CCCCCCCCEEECCC
T ss_pred             CCcCCCCCEEEeCC
Confidence               56667887775

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.9e-13  Score=80.41  Aligned_cols=87  Identities=18%  Similarity=0.276  Sum_probs=66.7

Q ss_pred             cceEEecCCCeEEEEEEEe-ecCCCeEEEEECCEEecc--CCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeE
Q psy12131         56 KQWIHTAPDMRAEIICNVY-ANPPAKVEWFRDGTAITL--GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ  132 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~-~~~~~~~~w~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~  132 (245)
                      +..+.+.+|+.+.|.|.+. +.|.+.+.|++++..+..  .....+...  ...|.|.++...|.|.|+|.+.|..|...
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~   86 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH--KEKLWFVPAKVEDSGHYYCVVRNSSYCLR   86 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEE--TTEEEETTCCGGGCEEEEEEEEETTEEEE
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEecc--CCEEEeccceecCCEEEEEEEECCCCeEE
Confidence            3456677899999999885 678899999998754432  222222222  34799999999999999999999999999


Q ss_pred             EEEEEEecCCCC
Q psy12131        133 QFIQLSGIPNIP  144 (245)
Q Consensus       133 ~~~~~~~~~~~p  144 (245)
                      ..+.|.+....|
T Consensus        87 ~~~~L~V~~~~p   98 (101)
T d1iray1          87 IKISAKFVENEP   98 (101)
T ss_dssp             EEEEEEEECCCT
T ss_pred             EEEEEEEEeCCC
Confidence            999988865444

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.5e-12  Score=75.79  Aligned_cols=79  Identities=23%  Similarity=0.399  Sum_probs=59.8

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCC-eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      +|.+...|....+.+|+.+.|.|.+.+.|.+ .+.|++++..+...          ...|.|..+..+|.|.|.|.+.|.
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~i~~v~~~d~G~Y~C~a~~s   70 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET----------NSSLNIVNAKFEDSGEYKCQHQQV   70 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC----------SSEEEECSCCGGGCEEEEEECTTS
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc----------cceeEECCCChhhCCcEEEEecCC
Confidence            4667777776778899999999999988887 46678888776543          236999999999999999999987


Q ss_pred             CceeEEEEEE
Q psy12131        128 LGSSQQFIQL  137 (245)
Q Consensus       128 ~g~~~~~~~~  137 (245)
                      .++....+.+
T Consensus        71 ~~S~~v~l~V   80 (82)
T d1f2qa1          71 NESEPVYLEV   80 (82)
T ss_dssp             SCCCCEEEEE
T ss_pred             CCcccEEEEE
Confidence            6655544443

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=4.9e-11  Score=72.61  Aligned_cols=93  Identities=15%  Similarity=0.146  Sum_probs=68.7

Q ss_pred             ecCCCCccccC---ccccCCCeeEEEEEeCC------CCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEec
Q psy12131        139 GIPNIPVFQKS---SRRLGPDGYRLVWQVDT------YSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNIT  209 (245)
Q Consensus       139 ~~~~~p~~~~~---~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  209 (245)
                      ++|.||..+..   ........+.|+|.++.      +..++.|.++|+... ...|........         ..+.+.
T Consensus         1 vkP~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~-~~~~~~~~~~~~---------~~~~i~   70 (103)
T d1f6fb2           1 VEPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEE-AEEWEIHFTGHQ---------TQFKVF   70 (103)
T ss_dssp             BCCCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESS-CSCCEEEEEETC---------SEEEEC
T ss_pred             CCCCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCC-Ccceeeecccce---------eEEEeC
Confidence            35777764332   12244567999999842      235689999999876 677766544322         679999


Q ss_pred             CCCCCceEEEEEEEEecCCC-CCCCcceEEecC
Q psy12131        210 GLQLFTQYEASVLAKNRFGW-SRPSKAYVFATE  241 (245)
Q Consensus       210 ~l~~~~~y~~~v~a~N~~G~-~~~s~~~~~~t~  241 (245)
                      +|.+++.|.|||+|.|..|. |++|..+.+.++
T Consensus        71 ~L~p~t~Y~~rVra~~~~G~wS~wS~~~~~~~P  103 (103)
T d1f6fb2          71 DLYPGQKYLVQTRCKPDHGYWSRWSQESSVEMP  103 (103)
T ss_dssp             CCCTTCEEEEEEEEEESSSCCCCCCCCEEEECC
T ss_pred             CCCcceEEEEEEEEEeCCCCCCCCcCceeeECc
Confidence            99999999999999999996 999999888764

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.31  E-value=2.1e-11  Score=74.53  Aligned_cols=78  Identities=19%  Similarity=0.276  Sum_probs=62.8

Q ss_pred             cCCCeeEEEEEe----CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCC
Q psy12131        153 LGPDGYRLVWQV----DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG  228 (245)
Q Consensus       153 ~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G  228 (245)
                      ....++.|+|.+    ..++++.+|.|.|+.......|..........       .++.|.+|.+++.|.|+|.|.|..|
T Consensus        16 ~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~~~~~-------~~~~i~~L~p~t~Y~~~V~A~N~~G   88 (105)
T d1cfba2          16 TEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQ-------NNIVIADQPTFVKYLIKVVAINDRG   88 (105)
T ss_dssp             SSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTC-------CEEEECSCCSSCEEEEEEEEEETTE
T ss_pred             ccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEEecCCCc-------cEEEECCCCCCCEEEEEEEEEeCCc
Confidence            567799999986    34679999999998876556676665544332       6899999999999999999999999


Q ss_pred             CCCCCcceE
Q psy12131        229 WSRPSKAYV  237 (245)
Q Consensus       229 ~~~~s~~~~  237 (245)
                      .|.+|....
T Consensus        89 ~gp~S~~~v   97 (105)
T d1cfba2          89 ESNVAAEEV   97 (105)
T ss_dssp             ECSSCCCCE
T ss_pred             CCCCCCCcE
Confidence            999886543

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.4e-11  Score=73.50  Aligned_cols=93  Identities=16%  Similarity=0.167  Sum_probs=64.4

Q ss_pred             ecCCCCccccCc---cccCCCeeEEEEEeCC------CCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEec
Q psy12131        139 GIPNIPVFQKSS---RRLGPDGYRLVWQVDT------YSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNIT  209 (245)
Q Consensus       139 ~~~~~p~~~~~~---~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  209 (245)
                      ++|.||......   .......+.|+|.++.      ......|.++++... ...|........         ..+.+.
T Consensus         1 vkP~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~-~~~~~~~~~~~~---------~~~~i~   70 (104)
T d3d48r2           1 VQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEK-AAEWEIHFAGQQ---------TEFKIL   70 (104)
T ss_dssp             BCCCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETT-CSSCEEEEEETC---------SEEEEC
T ss_pred             CCCcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeecccccc-ccceeeeccccc---------cEEEEC
Confidence            457777654432   2234567999999832      124567888887765 555655443322         678999


Q ss_pred             CCCCCceEEEEEEEEecCCC-CCCCcceEEecC
Q psy12131        210 GLQLFTQYEASVLAKNRFGW-SRPSKAYVFATE  241 (245)
Q Consensus       210 ~l~~~~~y~~~v~a~N~~G~-~~~s~~~~~~t~  241 (245)
                      +|.+++.|.|||+|.|..|. |++|..+.++|+
T Consensus        71 ~L~p~t~Y~~rVrA~n~~G~ws~wS~~~~v~tP  103 (104)
T d3d48r2          71 SLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIP  103 (104)
T ss_dssp             C--CCCEEEEEEEEEESSSCCCCCCCCEEEECC
T ss_pred             CCCCCCEEEEEEEEEeCCCCCCCCcCCEEEECc
Confidence            99999999999999999997 999999999875

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=3.6e-12  Score=80.08  Aligned_cols=84  Identities=18%  Similarity=0.218  Sum_probs=63.4

Q ss_pred             ccCCCeeEEEEEeC---CCCCceEEEEEEEeec---CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEe
Q psy12131        152 RLGPDGYRLVWQVD---TYSGIIQYLLKFRERE---ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKN  225 (245)
Q Consensus       152 ~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N  225 (245)
                      ....+++.|.|.++   +..++..|.++|+...   ....|..+.....         ..+.+.+|.+++.|.|||+|.|
T Consensus        26 ~vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~~~~~---------~~~~v~~L~p~t~Y~frV~A~n   96 (120)
T d1wfua_          26 KVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYA---------TRHVVEGLEPRTLYKFRLKVTS   96 (120)
T ss_dssp             CEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEEESC---------SEEEEESCCTTCEEEEEEEEEC
T ss_pred             EecCCEEEEEEECCcccCcccccceeeeeeeecccccccceeeeccccc---------cEEeCCCCCCCcEeeEEEEEEe
Confidence            35678999999972   2346667766665432   3455665543222         6799999999999999999999


Q ss_pred             cCCCCCCCcceEEecCCCC
Q psy12131        226 RFGWSRPSKAYVFATEGAE  244 (245)
Q Consensus       226 ~~G~~~~s~~~~~~t~~~~  244 (245)
                      ..|.|.+|..+.++|...+
T Consensus        97 ~~G~s~~S~~~~~~T~~~~  115 (120)
T d1wfua_          97 PSGEYEYSPVVSVATTRES  115 (120)
T ss_dssp             SSSCEEECCCEEEECCCCC
T ss_pred             CCcEeCCCCCEEEEeCCCC
Confidence            9999999999999997653

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.5e-11  Score=72.09  Aligned_cols=74  Identities=22%  Similarity=0.170  Sum_probs=59.3

Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      ....+++.|.|.+..+.++.+|.++|+... ...|..........       .++.+.+|.+++.|.|+|.|.|..|.|.
T Consensus        16 ~~t~~si~l~W~~p~~~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~-------t~~~i~~L~p~t~Y~~~V~a~~~~g~s~   87 (95)
T d2fnba_          16 DITDSSIGLRWTPLNSSTIIGYRITVVAAG-EGIPIFEDFVDSSV-------GYYTVTGLEPGIDYDISVITLINGGESA   87 (95)
T ss_dssp             CCCSSCEEEECCCCCCSSCCEEEEEEEEET-SCCEEEEEECCSSC-------SEEEECCCCTTSEEEEEEEEEETTEECC
T ss_pred             EEcCCEEEEEEEecCCceEEeEEEEEEEee-ccceEEEEEeCCCC-------eEEEEecccCCEEEEEEEEEEeCCcEeC
Confidence            467889999999866678899999999876 44454433322222       7899999999999999999999999998


Q ss_pred             CC
Q psy12131        232 PS  233 (245)
Q Consensus       232 ~s  233 (245)
                      ++
T Consensus        88 p~   89 (95)
T d2fnba_          88 PT   89 (95)
T ss_dssp             CC
T ss_pred             CE
Confidence            87

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=3.1e-12  Score=76.07  Aligned_cols=75  Identities=17%  Similarity=0.290  Sum_probs=58.4

Q ss_pred             eEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCC-cEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCceeEEEEE
Q psy12131         58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGG-RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQ  136 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~~~~  136 (245)
                      ...+.+|+++.|.|.+.+ +.|.+.|++++..+.... ++.+.   ....|.|.++..+|.|.|+|.|.|..|.......
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~---~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~   81 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLM---GRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQV   81 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCT---TTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecc---eeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEE
Confidence            456789999999999987 678999999988776543 22222   2336999999999999999999998876554333

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=5.6e-11  Score=72.67  Aligned_cols=81  Identities=11%  Similarity=0.110  Sum_probs=62.0

Q ss_pred             cCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        153 LGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       153 ~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      .....+.|+|.+  .....++.|.|+|+.......|..+......       ...+.+.+|.+++.|.|||+|.|..|.|
T Consensus        19 ~~~~~i~v~W~pp~~~~~~~~~Y~i~y~~~~~~~~w~~v~~~~~~-------~~~~~l~~L~p~t~Y~frVra~~~~g~g   91 (106)
T d1cd9b2          19 HQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSS-------KDQFELCGLHQAPVYTLQMRCIRSSLPG   91 (106)
T ss_dssp             -CCSCEEEEEECCGGGTTSCEEEEEEEEESSTTCCCEEEEEEESC-------EEEEEECCCCSCSCEEEEEEEEESSSCC
T ss_pred             CCCCEEEEEEcCcccCCccceEEEEEEeeccccccceeeecccCC-------ceEEEEeccCCCeEEEEEEEEEeCCCCC
Confidence            456789999997  4456789999999986546778776543222       2788999999999999999999999986


Q ss_pred             CCC---cceEEec
Q psy12131        231 RPS---KAYVFAT  240 (245)
Q Consensus       231 ~~s---~~~~~~t  240 (245)
                      .+|   ..+.+++
T Consensus        92 ~wS~wS~~~~~~~  104 (106)
T d1cd9b2          92 FWSPWSPGLQLRP  104 (106)
T ss_dssp             CCCCCCCCEEECC
T ss_pred             CCcCCCCCeEecC
Confidence            554   5566654

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.3e-11  Score=74.88  Aligned_cols=89  Identities=13%  Similarity=0.117  Sum_probs=65.8

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEee-cCCC--eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYA-NPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA  124 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  124 (245)
                      .||.+...+....+..|+.++|.|.+.| .|.+  .+.|++++..+.....   ......+.|.|.....+|.|.|+|.|
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~---~~~~~~s~l~i~~~~~dd~g~ytC~A   79 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGAQFSCRT   79 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECCSSCSSCEEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc---ccccceEEEEEeeehhHCCCEEEEEE
Confidence            3566666666666889999999999987 4544  6889999988754321   12223567899999999999999999


Q ss_pred             EeCCceeEEEEEEEe
Q psy12131        125 SNNLGSSQQFIQLSG  139 (245)
Q Consensus       125 ~n~~g~~~~~~~~~~  139 (245)
                      .|..|.....+.+.+
T Consensus        80 ~n~~g~~~~~~~~~~   94 (103)
T d1iama1          80 ELDLRPQGLELFENT   94 (103)
T ss_dssp             EEECGGGTSCEEEEE
T ss_pred             EeCCCCccCeEeeeE
Confidence            999987665555443

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=6.9e-12  Score=76.92  Aligned_cols=90  Identities=18%  Similarity=0.257  Sum_probs=64.9

Q ss_pred             cCCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceE
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY  217 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y  217 (245)
                      .|.+|..... ......++.|.|.+  ..++++.+|.|.|+.......|.........        .++.+.+|.+++.|
T Consensus        10 vP~~p~~l~~-~~~~~~sv~l~W~~P~~~ng~i~~Y~i~~~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y   80 (106)
T d1wfna1          10 VPGPVGHLSF-SEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVT--------LEYRVTGLTALTTY   80 (106)
T ss_dssp             SCCCCSCCEE-ESCCSSEEEEECCCCTTCCSCCCEEEEEEEESSCGGGCCCEEECSSC--------CEEEEESCCTTCEE
T ss_pred             CCcCCCCcEE-EEecCCEEEEEEECCCCCCCcEEeEEEEEEECCCCcceEEEecCCCe--------eEEEEccCCCCCEE
Confidence            3445443332 23567799999997  3456789999999887633334333333332        68999999999999


Q ss_pred             EEEEEEEecCCCCCCCcceEE
Q psy12131        218 EASVLAKNRFGWSRPSKAYVF  238 (245)
Q Consensus       218 ~~~v~a~N~~G~~~~s~~~~~  238 (245)
                      .|+|.|.|..|.|..|.....
T Consensus        81 ~~~V~A~n~~G~g~~s~~~~~  101 (106)
T d1wfna1          81 TIEVAAMTSKGQGQVSASTIS  101 (106)
T ss_dssp             EEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEEECCCCCcCCcCCEEc
Confidence            999999999999988875443

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5.9e-12  Score=77.47  Aligned_cols=91  Identities=21%  Similarity=0.185  Sum_probs=69.4

Q ss_pred             CCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEe--eCCCCCCCcceeeeEEEecCCCCCce
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIV--IPSDGSLAGPIYTQSYNITGLQLFTQ  216 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~~~~  216 (245)
                      +.||.....  ....+++.|.|.+  ..+.++.+|.++|+..  ...|..+.  +....        ..+.+.+|.+++.
T Consensus         8 ~sPP~~~~~--~~t~~si~l~W~pp~~~~~~i~~Y~v~~~~~--~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~   75 (108)
T d1v5ja_           8 LSPPRGLVA--VRTPRGVLLHWDPPELVPKRLDGYVLEGRQG--SQGWEVLDPAVAGTE--------TELLVPGLIKDVL   75 (108)
T ss_dssp             CCCCEEEEE--EECSSSEEEEEECCSCCSSCCCBEEEEEEET--TCCCEEEEEEECSSC--------CEEECCCCCTTSC
T ss_pred             CCcCCCeEE--EEcCCEEEEEEEecccCCCceeEEEEEeeee--eeeeeecccccccee--------eeEEEEeccCCcE
Confidence            345555543  2456789999998  3456889999999875  45565443  22222        7899999999999


Q ss_pred             EEEEEEEEecCCCCCCCcceEEecCCC
Q psy12131        217 YEASVLAKNRFGWSRPSKAYVFATEGA  243 (245)
Q Consensus       217 y~~~v~a~N~~G~~~~s~~~~~~t~~~  243 (245)
                      |.|||.|.|..|.|.+|..+.++|.+.
T Consensus        76 Y~~rV~A~n~~g~s~~S~~~~~~T~~~  102 (108)
T d1v5ja_          76 YEFRLVAFAGSFVSDPSNTANVSTSGL  102 (108)
T ss_dssp             EECCBEEEETTEEEEECSCCCCCCSSC
T ss_pred             EEEEEEEEeCCCEeCCcCceEEECCCC
Confidence            999999999999999999999988763

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=3.4e-11  Score=73.07  Aligned_cols=83  Identities=18%  Similarity=0.238  Sum_probs=65.4

Q ss_pred             ccCCCeeEEEEEe----CCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEe
Q psy12131        152 RLGPDGYRLVWQV----DTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKN  225 (245)
Q Consensus       152 ~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N  225 (245)
                      .....++.|.|..    ..++++.+|.+.|+...  ....|.........        ..+.|.+|.+++.|.|+|.|.|
T Consensus        12 ~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~v~a~n   83 (101)
T d1x4ya1          12 AVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR--------YWHSISHLQPETSYDIKMQCFN   83 (101)
T ss_dssp             CSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTC--------CEEEECSCCTTCEEEEEEEEEC
T ss_pred             EEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEEcCCe--------eEEEEcCCCCCCEEEEEEEEEc
Confidence            4678899999986    33468899999999865  22223333333322        6789999999999999999999


Q ss_pred             cCCCCCCCcceEEecCC
Q psy12131        226 RFGWSRPSKAYVFATEG  242 (245)
Q Consensus       226 ~~G~~~~s~~~~~~t~~  242 (245)
                      ..|.|.+|..+.++|..
T Consensus        84 ~~G~s~~S~~~~~~T~~  100 (101)
T d1x4ya1          84 EGGESEFSNVMICETKA  100 (101)
T ss_dssp             TTCCCCCCCCEEEECCC
T ss_pred             CCCCCCCCCcEEEEccC
Confidence            99999999999999874

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=4.6e-11  Score=72.87  Aligned_cols=86  Identities=14%  Similarity=0.152  Sum_probs=65.2

Q ss_pred             cCCCCccccCccc-cCCCeeEEEEEeC----CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCC
Q psy12131        140 IPNIPVFQKSSRR-LGPDGYRLVWQVD----TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF  214 (245)
Q Consensus       140 ~~~~p~~~~~~~~-~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~  214 (245)
                      +|.||..+....+ ...+.+.|+|.++    .+..+..|.++|+... ...|.........        ..+.|.+|.++
T Consensus         1 kP~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~--------~~~~i~~L~p~   71 (104)
T d1n26a3           1 QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAER-SKTFTTWMVKDLQ--------HHCVIHDAWSG   71 (104)
T ss_dssp             CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETT-CSCCEEEECGGGC--------SEEEESSCCTT
T ss_pred             CCcCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCC-CCceeeeccccce--------EEEEECCCCCC
Confidence            3667765544322 2356799999973    3456788999999875 6788877655433        68999999999


Q ss_pred             ceEEEEEEEEecCCCCCCCc
Q psy12131        215 TQYEASVLAKNRFGWSRPSK  234 (245)
Q Consensus       215 ~~y~~~v~a~N~~G~~~~s~  234 (245)
                      +.|.|||+|.|..|.|.+|+
T Consensus        72 t~Y~~rVra~n~~g~g~wSe   91 (104)
T d1n26a3          72 LRHVVQLRAQEEFGQGEWSE   91 (104)
T ss_dssp             CCEEEEEEEEETTTBSCCCC
T ss_pred             CEEEEEEEEEeCCCccCCcC
Confidence            99999999999999977665

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3e-11  Score=73.59  Aligned_cols=88  Identities=19%  Similarity=0.314  Sum_probs=65.3

Q ss_pred             CCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeec----CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCC
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFRERE----ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF  214 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~  214 (245)
                      |.+|...... .....++.|.|.+  +.++++.+|.+.|+...    ....|..........       ..+.+.+|.++
T Consensus         3 P~~P~~~~~~-~~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~L~p~   74 (103)
T d1qg3a2           3 PSEPGRLAFN-VVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKN-------RMLLIENLRES   74 (103)
T ss_dssp             CCCCCCCEEE-EEETTEEEEECCCCSCCSSCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTC-------CEEEECCCCTT
T ss_pred             CccCCCcEEE-EecCCEEEEEEEECccCCCCceEEEEEeeccccccccccceEEEEecCCCc-------eEEEEeecCCC
Confidence            4455444332 3677899999997  45579999999998876    233455544433332       78999999999


Q ss_pred             ceEEEEEEEEecCCCCCCCcce
Q psy12131        215 TQYEASVLAKNRFGWSRPSKAY  236 (245)
Q Consensus       215 ~~y~~~v~a~N~~G~~~~s~~~  236 (245)
                      +.|.|+|.|.|..|.|.++...
T Consensus        75 t~Y~~~V~A~n~~G~g~~s~~~   96 (103)
T d1qg3a2          75 QPYRYTVKARNGAGWGPEREAI   96 (103)
T ss_dssp             CCEEEEEEEEETTEECCCEEEE
T ss_pred             CEEEEEEEEEcCCccCCCcccc
Confidence            9999999999999999887643

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.7e-11  Score=74.24  Aligned_cols=68  Identities=22%  Similarity=0.392  Sum_probs=55.6

Q ss_pred             EecCCCeEEEEE------EEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         60 HTAPDMRAEIIC------NVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        60 ~~~~g~~~~l~C------~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      .+..|....|.|      .+.+.|.|.+.|++++..+...........   ..|.|.++..+|.|.|+|.|.|..|.
T Consensus        10 ~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2          10 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVK---DRLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             EEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEET---TEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             EEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecC---CEEEEcccccccCcEEEEEEEECcCC
Confidence            466899999999      557889999999999999876654433333   36999999999999999999997753

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.8e-11  Score=75.71  Aligned_cols=93  Identities=25%  Similarity=0.302  Sum_probs=65.9

Q ss_pred             CCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeec--CCCCeEEEee--CCCCCCCcceeeeEEEecCCCCC
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFRERE--ELTPWRNIVI--PSDGSLAGPIYTQSYNITGLQLF  214 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~  214 (245)
                      |.+|...... .....++.|.|.+  +++.++..|.++|+...  ....|.....  ....       ...+.+.+|.++
T Consensus        11 P~~P~~~~~~-~~~~~sv~l~W~pp~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~L~p~   82 (111)
T d1wisa1          11 PGPPTNLGIS-NIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPD-------ARSMEVPDLNPF   82 (111)
T ss_dssp             CCCCEEEEEE-SCCSSCEEEEEECCCCCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTT-------CSEEEECSCCTT
T ss_pred             CcCCCCCEEE-EcCCCEEEEEEeCCCCCCCceeEEEEeeeecccCCCcceeeeeeeecccc-------eeEEEeCCCCCC
Confidence            4555444332 3567899999998  45578999999998765  2233332221  1211       267999999999


Q ss_pred             ceEEEEEEEEecCCCCCCCcc-eEEecC
Q psy12131        215 TQYEASVLAKNRFGWSRPSKA-YVFATE  241 (245)
Q Consensus       215 ~~y~~~v~a~N~~G~~~~s~~-~~~~t~  241 (245)
                      +.|.|||.|.|..|.|.+|.. ..++|.
T Consensus        83 t~Y~frV~A~N~~G~s~~S~~s~~~~Tl  110 (111)
T d1wisa1          83 TCYSFRMRQVNIVGTSPPSQPSRKIQTL  110 (111)
T ss_dssp             SEECCCCEEECSSCBCCCCCCCCCEECC
T ss_pred             CEEEEEEEEEcCCcCCCCcCCCCCEEcc
Confidence            999999999999999998875 556664

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.6e-11  Score=76.93  Aligned_cols=84  Identities=19%  Similarity=0.130  Sum_probs=63.9

Q ss_pred             ccCCCeeEEEEEeC----CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecC
Q psy12131        152 RLGPDGYRLVWQVD----TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRF  227 (245)
Q Consensus       152 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~  227 (245)
                      .....++.|.|.+.    .++++.+|.+.|+... ...+.........       ...+.|.+|.+++.|.|+|.|.|..
T Consensus        22 ~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~-~~~~~~~~~~~~~-------~~~~~i~~L~p~t~Y~~~V~A~n~~   93 (119)
T d1x5ha1          22 VRNSKSIMIHWQPPAPATQNGQITGYKIRYRKAS-RKSDVTETLVSGT-------QLSQLIEGLDRGTEYNFRVAALTIN   93 (119)
T ss_dssp             CCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETT-EEEEEECCBCCTT-------CCEEEEECCCSSCEEEEECEEEETT
T ss_pred             EecCcEEEEEEEcccccCCCCCEEEEEEEEeecc-cccceeeeecCCC-------ccEEEeCCCCCCCEEEEEEEEEcCC
Confidence            35677999999972    3458899999998864 2223222221221       2789999999999999999999999


Q ss_pred             CCCCCCcceEEecCCC
Q psy12131        228 GWSRPSKAYVFATEGA  243 (245)
Q Consensus       228 G~~~~s~~~~~~t~~~  243 (245)
                      |.|.+|..+.++|.+.
T Consensus        94 G~G~~S~~~~~~T~~~  109 (119)
T d1x5ha1          94 GTGPATDWLSAETFES  109 (119)
T ss_dssp             EEEEECCCEEEECCSS
T ss_pred             cCCCCCCCEEEEeCCC
Confidence            9999999999999653

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=4.7e-11  Score=74.24  Aligned_cols=100  Identities=18%  Similarity=0.195  Sum_probs=71.0

Q ss_pred             ecCCCCccccCc-cccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCc
Q psy12131        139 GIPNIPVFQKSS-RRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFT  215 (245)
Q Consensus       139 ~~~~~p~~~~~~-~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~  215 (245)
                      ++|.||...... ......++.|.|.+  +.++++..|.++|+... ...|........     ......+.|.+|.+++
T Consensus         3 vkP~pP~~~~v~~~~~~~~si~v~W~~p~~~~~~~~~Y~v~y~~~~-~~~~~~~~~~~~-----~~~~~~~~i~~L~~~t   76 (115)
T d1bqua2           3 VKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKD-ASTWSQIPPEDT-----ASTRSSFTVQDLKPFT   76 (115)
T ss_dssp             EECCCCEEEEEECC--CCSCEEEEEECCGGGGTSCEEEEEEEEETT-CSSCEECCGGGG-----CSCCSEEEECSCCSSE
T ss_pred             eECCCCCCCEEEEeccCCCEEEEEEeeccccccceeeeeeeeeeee-eeeeeccccccc-----cccccEEeeCCCccCc
Confidence            567777654332 23456789999997  34568899999999875 555654332111     1112789999999999


Q ss_pred             eEEEEEEEEecCCCCCC---CcceEEecCCCC
Q psy12131        216 QYEASVLAKNRFGWSRP---SKAYVFATEGAE  244 (245)
Q Consensus       216 ~y~~~v~a~N~~G~~~~---s~~~~~~t~~~~  244 (245)
                      .|.|+|+|.|..|.|.+   |..+.++|..++
T Consensus        77 ~Y~~~V~a~~~~G~g~~S~~S~~~~~~T~~~~  108 (115)
T d1bqua2          77 EYVFRIRCMKEDGKGYWSDWSEEASGITYEDR  108 (115)
T ss_dssp             EEEEEEEEEETTSCSCCCCCCCCEEEEECCCH
T ss_pred             EEEEEEEEEeCCCccCCcCCcCCEEEECCCCC
Confidence            99999999999998765   457888887764

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.7e-10  Score=68.93  Aligned_cols=88  Identities=16%  Similarity=0.236  Sum_probs=66.6

Q ss_pred             ecCCCCccccCccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEE
Q psy12131        139 GIPNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE  218 (245)
Q Consensus       139 ~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  218 (245)
                      ++|.+|..+... ....+.+.|+|..+....+..|.++|+... ...|........         ..+.+.+|.+++.|.
T Consensus         1 V~P~~P~nl~v~-~~~~~~v~l~W~~p~~~~~~~y~v~y~~~~-~~~~~~~~~~~~---------~~~~~~~L~p~t~Y~   69 (95)
T d2b5ic1           1 VIPWAPENLTLH-KLSESQLELNWNNRFLNHCLEHLVQYRTDW-DHSWTEQSVDYR---------HKFSLPSVDGQKRYT   69 (95)
T ss_dssp             EECCCCEEEEEE-EEETTEEEEEEECSSCSTTCEEEEEEEETT-CSSCEEEEECSS---------CEEEECSCCTTSCEE
T ss_pred             CCCcCCCCCEEE-EEeCCEEEEEECCCCCceeEEEEEEEEcCC-CceeeEeeeccc---------ceeEcCCCCCCCEEE
Confidence            457777766554 366789999999877777889999999876 566776654332         689999999999999


Q ss_pred             EEEEEEecCC------CCCCCcceE
Q psy12131        219 ASVLAKNRFG------WSRPSKAYV  237 (245)
Q Consensus       219 ~~v~a~N~~G------~~~~s~~~~  237 (245)
                      |||+|++..|      .|++|..+.
T Consensus        70 frVRa~~~~~~~~~g~WSeWS~pv~   94 (95)
T d2b5ic1          70 FRVRSRFNPLCGSAQHWSEWSHPIH   94 (95)
T ss_dssp             EEEEEECCSSSCCCCCCCCCCCCEE
T ss_pred             EEEEEeeCCCCCCCCCccCCCCcee
Confidence            9999987654      245665553

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=7.9e-11  Score=74.57  Aligned_cols=97  Identities=24%  Similarity=0.366  Sum_probs=69.4

Q ss_pred             ecCCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeec-CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCc
Q psy12131        139 GIPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFRERE-ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFT  215 (245)
Q Consensus       139 ~~~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~  215 (245)
                      ..|.+|..+... .....++.|.|.+  +.+.++..|.+.|+... ....|.........        ..+.+.+|.+++
T Consensus        15 d~P~~P~~~~v~-~~~~~sv~l~W~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~t   85 (127)
T d1ueya_          15 DVPNPPFDLELT-DQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGT--------QTTAQLNLSPYV   85 (127)
T ss_dssp             CSCCCCEEEEEE-CCSSSCEEEEEECCCCCSSCEEEEEEEEEBTTTCTTCEEEEEEEESS--------CCEEEECCCTTC
T ss_pred             ccCcCCCCcEEE-EecCCeEEEEEeCCcccccceEeeeeeeccccccceeEEEEeecCCc--------eEEEECCCccCC
Confidence            456666544332 3667899999998  34567889999998765 33444444333222        568889999999


Q ss_pred             eEEEEEEEEecCCCCCCCcc-eEEecCCCC
Q psy12131        216 QYEASVLAKNRFGWSRPSKA-YVFATEGAE  244 (245)
Q Consensus       216 ~y~~~v~a~N~~G~~~~s~~-~~~~t~~~~  244 (245)
                      .|.|||.|.|..|.|.+|.. ..++|.+.+
T Consensus        86 ~Y~frV~A~n~~G~s~~S~~s~~~~t~~~~  115 (127)
T d1ueya_          86 NYSFRVMAVNSIGKSLPSEASEQYLTKASE  115 (127)
T ss_dssp             EECCEEEEEESSCBCCCCSCCCCEECCCSS
T ss_pred             EEEEEEEEEcCCcCcCCcCCcccEEcCCCC
Confidence            99999999999999998865 456666653

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.1e-10  Score=71.11  Aligned_cols=94  Identities=15%  Similarity=0.103  Sum_probs=65.6

Q ss_pred             cCCCCccccCccccCCCeeEEEEEeCCC----CCceEEEEEEEeecCCCCe-EEEeeCCCCCCCcceeeeEEEecCCCCC
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQVDTY----SGIIQYLLKFREREELTPW-RNIVIPSDGSLAGPIYTQSYNITGLQLF  214 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~  214 (245)
                      ++.||..+.... ....++.|+|.....    .....|.+.++.......+ .........        ..+.|.+|.++
T Consensus         2 rl~pP~~l~v~~-~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~   72 (104)
T d2b5ib2           2 RLMAPISLQVVH-VETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQ--------EWICLETLTPD   72 (104)
T ss_dssp             CCCCCEEEEEEE-ECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTSCCEEECSCC--------CEEEECSCCTT
T ss_pred             ccCCCCCcEEEE-EeCCEEEEEEccccccccccceeEEEEEEecccccceeeeEEecCCCc--------EEEEECCCCCC
Confidence            455666665543 567899999998322    3446778888765422222 222222222        67899999999


Q ss_pred             ceEEEEEEEEecCCC----CCCCcceEEecCC
Q psy12131        215 TQYEASVLAKNRFGW----SRPSKAYVFATEG  242 (245)
Q Consensus       215 ~~y~~~v~a~N~~G~----~~~s~~~~~~t~~  242 (245)
                      +.|.|+|+|.|..|.    |++|..+.++|.|
T Consensus        73 t~Y~~rVra~~~~g~~g~wS~wS~~v~~~T~P  104 (104)
T d2b5ib2          73 TQYEFQVRVKPLQGEFTTWSPWSQPLAFRTKP  104 (104)
T ss_dssp             CEEEEEEEEEESCCSSCCCCCCCCCEEEECCC
T ss_pred             CEEEEEEEEEECCCCCCCCCCCcCCEEEECCC
Confidence            999999999999885    6778889999876

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=99.19  E-value=1.2e-10  Score=68.47  Aligned_cols=84  Identities=24%  Similarity=0.271  Sum_probs=61.0

Q ss_pred             cCCCCccccCccccCCCeeEEEEEeC-CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEE
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQVD-TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE  218 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  218 (245)
                      .|.+|..+... .....++.|.|.+. .+..+.+|.+.+..    ..+..  . .         ...+.+.+|.+++.|.
T Consensus         3 AP~~P~~l~~~-~~~~~sv~lsW~~p~~~~~i~~Y~i~~~~----~~~~~--~-~---------~t~~~~~~L~p~t~Y~   65 (88)
T d1k85a_           3 APTAPTNLAST-AQTTSSITLSWTASTDNVGVTGYDVYNGT----ALATT--V-T---------GTTATISGLAADTSYT   65 (88)
T ss_dssp             SCCCCEEEEEE-EECSSCEEEEEECCSCCSSEEEEEEEESS----SEEEE--E-S---------SSEEEECCCCSSCEEE
T ss_pred             CcCCCCCcEEE-EecCCEEEEEEeCCCCCCCEEEEEEEccc----eEEEe--c-C---------CCEEEECCCCCCCEEE
Confidence            45566544443 35678999999984 34467888876422    11211  1 1         1679999999999999


Q ss_pred             EEEEEEecCC-CCCCCcceEEec
Q psy12131        219 ASVLAKNRFG-WSRPSKAYVFAT  240 (245)
Q Consensus       219 ~~v~a~N~~G-~~~~s~~~~~~t  240 (245)
                      |+|+|.|..| .|.+|+.+.++|
T Consensus        66 ~~V~A~n~~G~~s~~S~~v~vtT   88 (88)
T d1k85a_          66 FTVKAKDAAGNVSAASNAVSVKT   88 (88)
T ss_dssp             EEEEEEETTTEECCCCCCEEEEC
T ss_pred             EEEEEEECCCCcCCCCcCEEEEC
Confidence            9999999999 699999998876

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=9.6e-11  Score=72.05  Aligned_cols=93  Identities=19%  Similarity=0.237  Sum_probs=67.3

Q ss_pred             CCccccCccccCCCeeEEEEEe----CCCCCceEEEEEEEeecCC--CCeEEEeeCCCCCCCcceeeeEEEecCCCCCce
Q psy12131        143 IPVFQKSSRRLGPDGYRLVWQV----DTYSGIIQYLLKFREREEL--TPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQ  216 (245)
Q Consensus       143 ~p~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  216 (245)
                      ||..... .....+++.|.|.+    ..++++.+|.+.|+.....  ..+......      .......+.|.+|.+++.
T Consensus        11 pP~~v~v-~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~L~p~t~   83 (109)
T d1va9a1          11 PPMDVTL-QPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMK------ATGDSEVYTLDNLKKFAQ   83 (109)
T ss_dssp             CCEEEEE-EECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCC------CCSSEEEEEEESCCSSCC
T ss_pred             CCcCcEE-EEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEe------cCCCeeEEEECCCCcceE
Confidence            4443332 34678899999997    2346889999999887611  122211111      112237899999999999


Q ss_pred             EEEEEEEEecCCCCCCCcceEEecCC
Q psy12131        217 YEASVLAKNRFGWSRPSKAYVFATEG  242 (245)
Q Consensus       217 y~~~v~a~N~~G~~~~s~~~~~~t~~  242 (245)
                      |.|+|.|.|..|.|.+|..+.++|..
T Consensus        84 Y~~~V~a~n~~G~g~~S~~v~~~T~e  109 (109)
T d1va9a1          84 YGVVVQAFNRAGTGPSSSEINATTLE  109 (109)
T ss_dssp             EEEEEEEEETTEECCCCCCEECCCCS
T ss_pred             EEEEEEEEcCCcCCCCCCCEEEEcCC
Confidence            99999999999999999999999863

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=2.2e-11  Score=76.75  Aligned_cols=102  Identities=16%  Similarity=0.100  Sum_probs=67.2

Q ss_pred             cCCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCC------CeE-EEeeCCCCCCCcceeeeEEEecC
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELT------PWR-NIVIPSDGSLAGPIYTQSYNITG  210 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~i~~  210 (245)
                      .|.+|..+...  ...+++.|.|.+  ..++++++|.|+|+......      .|. ................+.+.+.+
T Consensus         7 ~P~aP~~v~v~--~~~~si~l~W~~P~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   84 (123)
T d1wfta_           7 GPGAPSTVRIS--KNVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAHID   84 (123)
T ss_dssp             CCCCCEEEEEE--ECSSEEEEEEECCSSCCSSCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTCCCB
T ss_pred             CCcCCcccEEE--eCCCEEEEEecCchhcCCceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEEEEcC
Confidence            35566554432  346789999997  45679999999998865111      111 11111110000111124557889


Q ss_pred             CCCCceEEEEEEEEecCCCCCCCcceEEecCCC
Q psy12131        211 LQLFTQYEASVLAKNRFGWSRPSKAYVFATEGA  243 (245)
Q Consensus       211 l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~~  243 (245)
                      |.+++.|.|||.|.|..|.|.+|+...++|...
T Consensus        85 L~p~t~Y~frV~A~N~~G~Gp~S~~~~~~t~~~  117 (123)
T d1wfta_          85 YTSRPAIVFRISAKNEKGYGPATQIRWLQGNSK  117 (123)
T ss_dssp             CSSSCEEEEEEEEBSSSSBCCCEEEEEECCSCC
T ss_pred             CCCCCEEEEEEEEecCCcCCCCCCcEEEEecCC
Confidence            999999999999999999999999988888653

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.7e-11  Score=73.97  Aligned_cols=78  Identities=23%  Similarity=0.287  Sum_probs=59.1

Q ss_pred             cCCCeeEEEEEe---CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        153 LGPDGYRLVWQV---DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       153 ~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      ....++.|+|.+   +++.++..|.++++... ...|..+......       ...+.+.+|.+++.|.|||.|.|..|.
T Consensus        14 ~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~-~~~~~~~~~~~~~-------~~~~~i~~L~p~t~Y~frV~A~n~~G~   85 (104)
T d1bpva_          14 ITRHTVTLKWAKPEYTGGFKITSYIVEKRDLP-NGRWLKANFSNIL-------ENEFTVSGLTEDAAYEFRVIAKNAAGA   85 (104)
T ss_dssp             EETTEEEEECCCCSCCTTCCCSCCEEEEEETT-SCCCEECCCSCCC-------SSEEEECSCCSSCCEEEEEEEECTTSC
T ss_pred             ecCCEEEEEEEeccccCcceEEEEEEEeeccc-ccceeEEEeeccc-------eeEEEEcCCCCCCEEEEEEEEEECCCC
Confidence            567899999997   33457889999998876 5556554433322       267999999999999999999999996


Q ss_pred             -CCCCcceEE
Q psy12131        230 -SRPSKAYVF  238 (245)
Q Consensus       230 -~~~s~~~~~  238 (245)
                       |.+|.....
T Consensus        86 ~s~~S~~s~~   95 (104)
T d1bpva_          86 ISPPSEPSDA   95 (104)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCCcCCCCC
Confidence             666765543

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=7.4e-10  Score=67.45  Aligned_cols=95  Identities=18%  Similarity=0.161  Sum_probs=65.3

Q ss_pred             ecCCCCccccCccccCCCeeEEEEEeC---CCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCc
Q psy12131        139 GIPNIPVFQKSSRRLGPDGYRLVWQVD---TYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFT  215 (245)
Q Consensus       139 ~~~~~p~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~  215 (245)
                      +++.||..+..........+.|.|.++   .....+.|.++|+.......+.........        ..+.|.+|.+++
T Consensus         3 Vk~dPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~--------t~~~i~~L~p~t   74 (105)
T d1erna2           3 VLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGR--------TECVLSNLRGRT   74 (105)
T ss_dssp             BCCCCCEEEEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CCCEEEEEEECTTC--------CEEEECSCCSSC
T ss_pred             cccCCCCCCEEEEecCCCcEEEEeeeccccccceEEEEEEEEecCCCCCceEEEeecCCc--------cEEEEeCCCCCc
Confidence            567888766554434455799999973   234567899999987522223333333332        678999999999


Q ss_pred             eEEEEEEEEecC----C-CCCCCcceEEecC
Q psy12131        216 QYEASVLAKNRF----G-WSRPSKAYVFATE  241 (245)
Q Consensus       216 ~y~~~v~a~N~~----G-~~~~s~~~~~~t~  241 (245)
                      .|.|+|+|++..    | .|++|..+.++|+
T Consensus        75 ~Y~~rVRar~~~~~~~G~WSeWS~~v~~~tP  105 (105)
T d1erna2          75 RYTFAVRARMAEPSFGGFWSAWSEPVSLLTP  105 (105)
T ss_dssp             EEEEEEEEEECSSSCCBCCCCCCCCEEEECC
T ss_pred             EEEEEEEEEECCCCCCCCCCCCCCCEEeeCc
Confidence            999999998653    3 2678888888874

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.6e-10  Score=66.79  Aligned_cols=88  Identities=19%  Similarity=0.231  Sum_probs=64.7

Q ss_pred             CCCccccCccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEE
Q psy12131        142 NIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASV  221 (245)
Q Consensus       142 ~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v  221 (245)
                      ++|...... .....++.|.|.++. +++.+|.+.|+.......+.........        ..+.|.+|.+++.|.|+|
T Consensus         3 d~P~~l~v~-~~s~~s~~l~W~~p~-~~~~~y~v~~~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~V   72 (90)
T d1tena_           3 DAPSQIEVK-DVTDTTALITWFKPL-AEIDGIELTYGIKDVPGDRTTIDLTEDE--------NQYSIGNLKPDTEYEVSL   72 (90)
T ss_dssp             CCCEEEEEE-SCCSSCEEEEEECCS-SCCSEEEEEEEETTCTTCCEEEEEETTC--------CEEEECSCCTTCEEEEEE
T ss_pred             CCCCCcEEE-EecCCEEEEEEEeCc-eEeccEEEEEEEcCCCceeEEEEecCCc--------ceeeEeeecCCCEEEEEE
Confidence            445444433 367789999999753 4788999999886634445555444443        789999999999999999


Q ss_pred             EEEecCCCCCCCcceEEec
Q psy12131        222 LAKNRFGWSRPSKAYVFAT  240 (245)
Q Consensus       222 ~a~N~~G~~~~s~~~~~~t  240 (245)
                      .|.|..|.|.++ ...+.|
T Consensus        73 ~a~~~~g~s~~~-~~~~~T   90 (90)
T d1tena_          73 ISRRGDMSSNPA-KETFTT   90 (90)
T ss_dssp             EEEETTEECCCE-EEEEEC
T ss_pred             EEEeCCCEeCCE-EEEEEC
Confidence            999999999875 344543

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.3e-10  Score=69.64  Aligned_cols=96  Identities=15%  Similarity=0.166  Sum_probs=68.8

Q ss_pred             ecCCCCccccCccccCCCeeEEEEEeCCC--------CCceEEEEEEEeecCC-CCeEEEeeCCCCCCCcceeeeEEEec
Q psy12131        139 GIPNIPVFQKSSRRLGPDGYRLVWQVDTY--------SGIIQYLLKFREREEL-TPWRNIVIPSDGSLAGPIYTQSYNIT  209 (245)
Q Consensus       139 ~~~~~p~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~  209 (245)
                      ++|.||..+..  ....+.+.|+|.++..        .....|.++|+..... ..+........        ...+.+.
T Consensus         4 vkP~pP~nl~v--~~~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~--------~~~~~~~   73 (114)
T d2gysa2           4 VQPPEPRDLQI--STDQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTS--------QATLGPE   73 (114)
T ss_dssp             BCCCCCEEEEE--EEETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEESSS--------EEEECTT
T ss_pred             ccCCcCCCeEE--EEeCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEeeccCc--------eEEEEeC
Confidence            56788876654  2456789999998321        2346788998886511 22333322222        2688899


Q ss_pred             CCCCCceEEEEEEEEecCCC------CCCCcceEEecCCCC
Q psy12131        210 GLQLFTQYEASVLAKNRFGW------SRPSKAYVFATEGAE  244 (245)
Q Consensus       210 ~l~~~~~y~~~v~a~N~~G~------~~~s~~~~~~t~~~~  244 (245)
                      +|.+++.|.|||+|.|..|.      |++|..++++|++|.
T Consensus        74 ~L~p~t~Y~~rVRa~~~~g~~~~g~wS~WS~~v~~~t~pg~  114 (114)
T d2gysa2          74 HLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGD  114 (114)
T ss_dssp             TCCTTCEEEEEEEEEECTTSSCCBCCCCCCCCEEEECCCCC
T ss_pred             CCCCCcEEEEEEEEEeCCCCCCCCCccCCcCCEeeeCcCCC
Confidence            99999999999999999885      678999999999874

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.14  E-value=9.9e-12  Score=76.52  Aligned_cols=80  Identities=16%  Similarity=0.253  Sum_probs=59.5

Q ss_pred             EEecCCCeEEEEEEE-eecCCCeEEEEECCEEeccC-------CcEEEEecCceeEEEEccCCCCCCe---EEEEEEEeC
Q psy12131         59 IHTAPDMRAEIICNV-YANPPAKVEWFRDGTAITLG-------GRIDMHVSSEKHSLLVRHIKDTDFG---NYMCQASNN  127 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~-~~~~~~~~~w~~~~~~~~~~-------~~~~~~~~~~~~~l~i~~~~~~d~g---~y~C~~~n~  127 (245)
                      ..+.+|+.+.|.|.+ .|.|.|.+.|++++..+...       .++..   .....|.|.+++..|.|   .|.|.|.|.
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~   88 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITA---GPDGNLYFTIVTKEDVSDIYKYVCTAKNA   88 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEE---CTTSCEEEEEECGGGCCSSEEEEEEEECT
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecc---ccccccEEeeeEeeccCCceEEEEEEEeC
Confidence            346789999999986 89999999999976544321       12222   12347999999988766   799999999


Q ss_pred             CceeEEEEEEEecC
Q psy12131        128 LGSSQQFIQLSGIP  141 (245)
Q Consensus       128 ~g~~~~~~~~~~~~  141 (245)
                      .|.....+.+..+.
T Consensus        89 ~g~~~~~~~~~~i~  102 (111)
T d1biha2          89 AVDEEVVLVEYEIK  102 (111)
T ss_dssp             TCSSCEEEEEEEEC
T ss_pred             CCCceEEEEEEEeC
Confidence            99887776655543

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.6e-10  Score=71.91  Aligned_cols=76  Identities=14%  Similarity=0.109  Sum_probs=58.3

Q ss_pred             cCCCeeEEEEEe----CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCC
Q psy12131        153 LGPDGYRLVWQV----DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG  228 (245)
Q Consensus       153 ~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G  228 (245)
                      .....+.|.|.+    ..++++.+|.|+|+... ...|......           ..+.+.+|.+++.|.|+|.|.|..|
T Consensus        29 ~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~-~~~~~~~~~~-----------~~~~~~~L~p~t~Y~~~V~A~n~~G   96 (117)
T d1wj3a_          29 ATDTKVLLNWEQVKAMENESEVTGYKVFYRTSS-QNNVQVLNTN-----------KTSAELVLPIKEDYIIEVKATTDGG   96 (117)
T ss_dssp             EETTEEEEECCCCCCCSSSCCEEEEEEEEEESS-CSSCEEEEES-----------SSEEEEECCCSSCEEEEEEEEESSC
T ss_pred             ecCCEEEEEEeecccccCCCceeEEEEEEEecC-CCceeeeece-----------eeEEEeeccCCcEEEEEEEEEcCCc
Confidence            567789999986    33468999999998865 4444433221           3356668999999999999999999


Q ss_pred             CCCCCcceEEec
Q psy12131        229 WSRPSKAYVFAT  240 (245)
Q Consensus       229 ~~~~s~~~~~~t  240 (245)
                      .|.+|..+.+.+
T Consensus        97 ~G~~S~~v~v~~  108 (117)
T d1wj3a_          97 DGTSSEQIRIPR  108 (117)
T ss_dssp             CCCBCCCEEECC
T ss_pred             cCCCCCCEEEec
Confidence            999999887743

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.4e-10  Score=70.18  Aligned_cols=83  Identities=22%  Similarity=0.166  Sum_probs=62.2

Q ss_pred             cccCCCeeEEEEEeCC------CCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEE
Q psy12131        151 RRLGPDGYRLVWQVDT------YSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAK  224 (245)
Q Consensus       151 ~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~  224 (245)
                      ......++.|.|.+..      ......|.+.|+... ...+.........        ..+.|.+|.+++.|.|+|.|.
T Consensus        11 ~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~V~a~   81 (100)
T d1x5ja1          11 SILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNI-PANTKYKNANATT--------LSYLVTGLKPNTLYEFSVMVT   81 (100)
T ss_dssp             EEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSS-SSSCCCEECCBCS--------SEEEEESCCTTCEECCEEEEE
T ss_pred             EEecCCEEEEEEcCCccccccceeeEEEEEEEeeecC-CCcceeEecCCCc--------cEEEECCCCCCCEEEEEEEEE
Confidence            3577889999999621      235577888887765 2223222222222        679999999999999999999


Q ss_pred             ecCCCCCCCcceEEecCC
Q psy12131        225 NRFGWSRPSKAYVFATEG  242 (245)
Q Consensus       225 N~~G~~~~s~~~~~~t~~  242 (245)
                      |..|.|.+|..+.++|..
T Consensus        82 n~~g~s~~S~~~~~~T~e   99 (100)
T d1x5ja1          82 KGRRSSTWSMTAHGTTFE   99 (100)
T ss_dssp             CSSCBCCCCCCCCEECCC
T ss_pred             eCCcCcCCCCeEEEEecc
Confidence            999999999999999864

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=5.4e-10  Score=66.16  Aligned_cols=80  Identities=20%  Similarity=0.255  Sum_probs=61.0

Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      .....++.|.|.+..+.++.+|.++|+.......+.........        ..+.|.+|.+++.|.|+|.|.|..|.|.
T Consensus        11 ~~~~~sv~l~W~~p~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~V~a~~~~g~S~   82 (91)
T d1fnfa2          11 NIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSD--------NAVVLTNLLPGTEYVVSVSSVYEQHEST   82 (91)
T ss_dssp             SCCSSCEEEEEECCTTCCCSEEEEEEEETTCTTCCEEEEECTTC--------CEEEECSCCTTCEEEEEEEEEETTEECC
T ss_pred             EeCCCEEEEEEEecCCCCcceeEEEEEECCCCccEEEEEeCCCc--------eEEEEeceeCCCEEEEEEEEEcCCCCCC
Confidence            46678999999987667888999999987633344444444433        7899999999999999999999999886


Q ss_pred             CCcceEEec
Q psy12131        232 PSKAYVFAT  240 (245)
Q Consensus       232 ~s~~~~~~t  240 (245)
                      + ....++|
T Consensus        83 p-~~~~~~T   90 (91)
T d1fnfa2          83 P-LRGRQKT   90 (91)
T ss_dssp             C-EEEEEEC
T ss_pred             C-EEEEEEC
Confidence            5 3444433

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.5e-10  Score=70.59  Aligned_cols=90  Identities=16%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             cCCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceE
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY  217 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y  217 (245)
                      .|.+|......  ...+++.|.|.+  ..++++.+|.|+|+...  ..+.........        ..+.+.+|.+++.|
T Consensus        20 vP~~P~~~~~~--~~~~si~v~W~~p~~~~g~i~~Y~i~~~~~~--~~~~~~~~~~~~--------~~~~i~~L~p~t~Y   87 (113)
T d1x5ia1          20 VPEVPSSLHVR--PLVTSIVVSWTPPENQNIVVRGYAIGYGIGS--PHAQTIKVDYKQ--------RYYTIENLDPSSHY   87 (113)
T ss_dssp             CCCSCSEEEEE--EETTEEEEEEECCSCTTBCCCEEEEEECSSC--GGGEEEECCTTC--------CEEEECSCCSSCEE
T ss_pred             CCCCCEeeeee--eCCCEEEEEEEccccCCccEEEEEEEeeecc--ccceeeeeeCCc--------cEEEEeccccCcEE
Confidence            34555544432  235789999997  34568999999998754  333334333332        78999999999999


Q ss_pred             EEEEEEEecCCCCCCCcceEEecCC
Q psy12131        218 EASVLAKNRFGWSRPSKAYVFATEG  242 (245)
Q Consensus       218 ~~~v~a~N~~G~~~~s~~~~~~t~~  242 (245)
                      .|+|.|.|..|.|.++. ..++|.+
T Consensus        88 ~~~V~A~n~~G~g~~~~-~~~~T~P  111 (113)
T d1x5ia1          88 VITLKAFNNVGEGIPLY-ESAVTRP  111 (113)
T ss_dssp             CCEEEEECSSCBCCCCC-CCEECCC
T ss_pred             EEEEEEECCCcCCCCee-eEEEeCC
Confidence            99999999999998654 4566654

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.8e-11  Score=73.93  Aligned_cols=80  Identities=16%  Similarity=0.126  Sum_probs=54.5

Q ss_pred             EEecCCCeEEEEEEEee-cC--CCeEEEEECCEEeccCCcEEEEe--cCceeEEEEccCCCCCCeEEEEEEEeCCceeEE
Q psy12131         59 IHTAPDMRAEIICNVYA-NP--PAKVEWFRDGTAITLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQ  133 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~-~~--~~~~~w~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  133 (245)
                      ..+..|+.++|.|.+.| .|  .+.+.|++++..+..........  ....+.|.+.....+|.|.|+|+|.|..+....
T Consensus        12 ~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~   91 (106)
T d1zxqa1          12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGG   91 (106)
T ss_dssp             SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTC
T ss_pred             CEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCC
Confidence            45778999999999986 33  45899999998876432211111  112346677777777788999999998875544


Q ss_pred             EEEEE
Q psy12131        134 FIQLS  138 (245)
Q Consensus       134 ~~~~~  138 (245)
                      .+.+.
T Consensus        92 ~~~~~   96 (106)
T d1zxqa1          92 NIFHK   96 (106)
T ss_dssp             CEEEE
T ss_pred             eeEec
Confidence            44333

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.1e-09  Score=66.30  Aligned_cols=92  Identities=20%  Similarity=0.282  Sum_probs=66.4

Q ss_pred             CCCCccccCccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEE
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEAS  220 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~  220 (245)
                      |.+|...... .....++.|.|.+.. +++.+|.+.|+..+ ...|.. ......        ..+.|.+|.+++.|.|+
T Consensus         1 P~~P~~l~~~-~~t~~si~l~W~~p~-~~i~~Y~v~~~~~~-~~~~~~-~~~~~~--------~~~~l~~L~p~t~Y~~~   68 (102)
T d2cuha1           1 PDGPTQLRAL-NLTEGFAVLHWKPPQ-NPVDTYDIQVTAPG-APPLQA-ETPGSA--------VDYPLHDLVLHTNYTAT   68 (102)
T ss_dssp             CSSCEEEECC-CCSSSCEEEEEECCS-SCCSEEEEEEECSS-SCCEEE-EEETTC--------SEEEECSCCSSSEEEEE
T ss_pred             CcCCCccEEE-EeCCCEEEEEEEeee-ccceeeEEEEEecc-ccceee-eeeeee--------eeEEEccEEeeEEEEEE
Confidence            3445444443 367889999999743 46789999998754 334433 333332        68999999999999999


Q ss_pred             EEEEecCCCCCCCcceEEecCCCCC
Q psy12131        221 VLAKNRFGWSRPSKAYVFATEGAET  245 (245)
Q Consensus       221 v~a~N~~G~~~~s~~~~~~t~~~~~  245 (245)
                      |.|.|..|.|.++ .+.++|...+|
T Consensus        69 V~a~~~~~~s~~~-~~~~~T~~~~P   92 (102)
T d2cuha1          69 VRGLRGPNLTSPA-SITFTTGLEAP   92 (102)
T ss_dssp             EEEEETTEECCCE-EEEEESCCCCT
T ss_pred             EEEEeCCCCcCCE-EEEEECCCCCC
Confidence            9999999998775 45677766554

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3e-10  Score=71.61  Aligned_cols=85  Identities=15%  Similarity=0.190  Sum_probs=63.1

Q ss_pred             ccCCCeeEEEEEeC----CCCCceEEEEEEEeec-CC------CCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEE
Q psy12131        152 RLGPDGYRLVWQVD----TYSGIIQYLLKFRERE-EL------TPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEAS  220 (245)
Q Consensus       152 ~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~  220 (245)
                      .....++.|+|.+.    .+..+..|.+.++... ..      ...........        ...+.|.+|.+++.|.|+
T Consensus        25 ~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~L~p~t~Y~~~   96 (125)
T d1uena_          25 VVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGS--------KTHGMLPGLEPFSHYTLN   96 (125)
T ss_dssp             EEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESS--------CSEEEEESCCSSCEEEEE
T ss_pred             EecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEeCCC--------ccEEEECCCCCCCEEEEE
Confidence            46678999999973    3467888888887654 11      11111222222        267999999999999999


Q ss_pred             EEEEecCCCCCCCcceEEecCCCC
Q psy12131        221 VLAKNRFGWSRPSKAYVFATEGAE  244 (245)
Q Consensus       221 v~a~N~~G~~~~s~~~~~~t~~~~  244 (245)
                      |.|.|..|.|.+|..+.++|.++.
T Consensus        97 V~A~n~~G~g~~S~~~~~~T~~~~  120 (125)
T d1uena_          97 VRVVNGKGEGPASPDRVFNTPEGS  120 (125)
T ss_dssp             EEEEESSCEEEECCCEEEECCCCC
T ss_pred             EEEEeCCcccCCCCCEEEECCCCC
Confidence            999999999999999999998753

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.2e-09  Score=64.40  Aligned_cols=80  Identities=26%  Similarity=0.417  Sum_probs=61.6

Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      .....++.|.|.+.. .....|.++|+.......+.........        ..+.+.+|.+++.|.|+|.|.|..|.|.
T Consensus        10 ~v~~~si~l~W~~p~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~V~a~n~~g~s~   80 (90)
T d1fnha1          10 QVTPTSLSAQWTPPN-VQLTGYRVRVTPKEKTGPMKEINLAPDS--------SSVVVSGLMVATKYEVSVYALKDTLTSR   80 (90)
T ss_dssp             EECSSCEEEEEECCS-SCCSEEEEEEEESSSCSCCCEEEECTTC--------CEEEECSCCTTCEEEEEEEEEETTEECC
T ss_pred             EecCCEEEEEEEccc-eeccceEEEEEeeeCCCceEEEEeCCCC--------eEEEEecccCceEEEEEEEEEeCCCCcC
Confidence            477889999999853 3567899998887644444444444443        6899999999999999999999999999


Q ss_pred             CCcceEEecC
Q psy12131        232 PSKAYVFATE  241 (245)
Q Consensus       232 ~s~~~~~~t~  241 (245)
                      ++.. .++|.
T Consensus        81 ~~~~-~~~T~   89 (90)
T d1fnha1          81 PAQG-VVTTL   89 (90)
T ss_dssp             CEEE-EEECC
T ss_pred             CEeE-EEEcC
Confidence            8754 45554

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.4e-10  Score=72.56  Aligned_cols=85  Identities=16%  Similarity=0.250  Sum_probs=64.7

Q ss_pred             ccCCCeeEEEEEeCCC-----------CCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEE
Q psy12131        152 RLGPDGYRLVWQVDTY-----------SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEAS  220 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~  220 (245)
                      .....++.|.|.++..           ..+..|.+.++.......|..+.....         ..+.|.+|.+++.|.|+
T Consensus        28 ~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~---------~~~~i~~L~P~t~Y~f~   98 (137)
T d1wk0a_          28 DIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEE---------TNITLNDLKPAMDYHAK   98 (137)
T ss_dssp             SCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEEEEESC---------SEEEECSCCTTCEECEE
T ss_pred             EeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCCccEEEEEecCc---------cEEEECCCCCCcEEEEE
Confidence            4667899999997321           145678888776554445554432222         67999999999999999


Q ss_pred             EEEEecCCCCCCCcceEEecCCCCC
Q psy12131        221 VLAKNRFGWSRPSKAYVFATEGAET  245 (245)
Q Consensus       221 v~a~N~~G~~~~s~~~~~~t~~~~~  245 (245)
                      |.|.|..|.|.+|..+.++|...+|
T Consensus        99 V~A~n~~G~g~~S~~~~~~T~~~~P  123 (137)
T d1wk0a_          99 VQAEYNSIKGTPSEAEIFTTLSCEP  123 (137)
T ss_dssp             EEEEETTEECCCCCCCCEECCCSSS
T ss_pred             EEEEcCCcccCCCCCEEEECCCCCC
Confidence            9999999999999999999987654

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=6.6e-10  Score=67.71  Aligned_cols=78  Identities=18%  Similarity=0.292  Sum_probs=61.0

Q ss_pred             CCeeEEEEEeCCC------CCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCC
Q psy12131        155 PDGYRLVWQVDTY------SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG  228 (245)
Q Consensus       155 ~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G  228 (245)
                      ...+.|+|.++..      ..+..|.++|+... ...|..+.....         ..+.|.+|.+++.|.|||+|.|..|
T Consensus        20 ~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~-~~~w~~~~~~~~---------~~~~i~~L~~~t~Y~frVRa~~~~~   89 (106)
T d1axib2          20 HADIQVRWEAPRNADIQKGWMVLEYELQYKEVN-ETKWKMMDPILT---------TSVPVYSLKVDKEYEVRVRSKQRNS   89 (106)
T ss_dssp             EEEEEEEEECCTTSCTTTTSCCEEEEEEEEETT-CSSCEECCCBSS---------SEEEEEEEETTSCEEEEEEEEETTS
T ss_pred             cCeEEEEEcCCCccCCCCCeeEEEEEEeeeecC-Cccceeeeeccc---------ceEEECCCCCCCEEEEEEEEEECCC
Confidence            3479999998321      24578999999876 677876543222         6799999999999999999999765


Q ss_pred             --CCCCCcceEEecCC
Q psy12131        229 --WSRPSKAYVFATEG  242 (245)
Q Consensus       229 --~~~~s~~~~~~t~~  242 (245)
                        .|++|..+.++++.
T Consensus        90 g~ws~wS~~v~v~~P~  105 (106)
T d1axib2          90 GNYGEFSEVLYVTLPQ  105 (106)
T ss_dssp             SCCCCCCCCEEECCCC
T ss_pred             CCCCCCCCCEEEECCC
Confidence              48999999998864

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.1e-09  Score=67.10  Aligned_cols=95  Identities=20%  Similarity=0.193  Sum_probs=67.5

Q ss_pred             ecCCCCccccCcc-ccCCCeeEEEEEeCC-----CCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCC
Q psy12131        139 GIPNIPVFQKSSR-RLGPDGYRLVWQVDT-----YSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQ  212 (245)
Q Consensus       139 ~~~~~p~~~~~~~-~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  212 (245)
                      ++|.||..+.... ......+.|+|..+.     ......|.+.++... ...|..+.....         ..+.|.+|.
T Consensus         6 VkP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~---------~~~~i~~L~   75 (109)
T d1uc6a_           6 VKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLI-LDQWQHVELSNG---------TAHTITDAY   75 (109)
T ss_dssp             CCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESS-SCCCCCEEESSC---------SEEEETTCC
T ss_pred             EECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecC-CCceEEeccCCc---------eeEEeCCCC
Confidence            5678886654432 234678999999832     223467888888765 666766654332         679999999


Q ss_pred             CCceEEEEEEEEecCCC--CCCCcceEEecCCC
Q psy12131        213 LFTQYEASVLAKNRFGW--SRPSKAYVFATEGA  243 (245)
Q Consensus       213 ~~~~y~~~v~a~N~~G~--~~~s~~~~~~t~~~  243 (245)
                      +++.|.|||+|.|..+.  |.+|..+.++|.-+
T Consensus        76 ~~t~Y~~rVrA~~~~~g~wS~WS~~~~~tt~~e  108 (109)
T d1uc6a_          76 AGKEYIIQVAAKDNEIGTWSDWSVAAHATPWTE  108 (109)
T ss_dssp             SSSCEEEEEECCBSSSCCCCCCCEEEEECCCCC
T ss_pred             CCCEEEEEEEEEECCCCCcCCCCCCEEeECCCC
Confidence            99999999999987542  77788888876543

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.8e-09  Score=64.14  Aligned_cols=82  Identities=17%  Similarity=0.126  Sum_probs=57.6

Q ss_pred             CCccccCccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCC-CeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEE
Q psy12131        143 IPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELT-PWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASV  221 (245)
Q Consensus       143 ~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v  221 (245)
                      ||...........+.+.|.|.+...+.+.+|.|.|+...... .-.........        ..+.|.+|.+++.|.++|
T Consensus         4 PP~~l~v~~~~~ts~i~v~W~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~v~V   75 (94)
T d1fnfa1           4 PPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQ--------SSCTFDNLSPGLEYNVSV   75 (94)
T ss_dssp             CCEEEEEEECSSSSCEEEEEECCSCSSCCEEEEEEEETTTCSSCCEEEEECTTC--------CEEECCCCCTTSCEEEEE
T ss_pred             cCcCcEEEEecCCCEEEEEeeCCCCCCeeEEEEEEEEecccCceEEEEEeCCCc--------cEEEECCCCCCCEEEEEE
Confidence            444444333233456899999866666899999999765122 22333333332        789999999999999999


Q ss_pred             EEEecCCCCCC
Q psy12131        222 LAKNRFGWSRP  232 (245)
Q Consensus       222 ~a~N~~G~~~~  232 (245)
                      .|.|..|.|.+
T Consensus        76 ~a~~~~g~s~p   86 (94)
T d1fnfa1          76 YTVKDDKESVP   86 (94)
T ss_dssp             EEEETTEECCC
T ss_pred             EEEcCCCEeCC
Confidence            99999998754

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.6e-10  Score=68.79  Aligned_cols=78  Identities=13%  Similarity=0.116  Sum_probs=56.8

Q ss_pred             eEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC--Cc--------EEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG--GR--------IDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~--~~--------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .+.+..|++++|.|... .|.+.+.|++++..+...  ..        ........+..|+|.+++.+|.|.|.|.+.|.
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            45678999999999864 677899999988765321  11        11122234568999999999999999999988


Q ss_pred             CceeEEEEE
Q psy12131        128 LGSSQQFIQ  136 (245)
Q Consensus       128 ~g~~~~~~~  136 (245)
                      .+.....+.
T Consensus        83 ~~t~~~~l~   91 (93)
T d1ccza1          83 TDTMKFFLY   91 (93)
T ss_dssp             CSCEEEEEE
T ss_pred             CcEEEEEEE
Confidence            776654444

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.9e-09  Score=63.73  Aligned_cols=74  Identities=20%  Similarity=0.333  Sum_probs=57.7

Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      .....++.|.|.++. +++.+|.++|+.......+.....+...        .++.|.+|.+++.|.|+|.|.|..|.+.
T Consensus         7 ~~t~~sv~l~W~~p~-~~~~~Y~v~~~~~~~~~~~~~~~~~~~~--------t~~~l~~L~p~t~Y~~~V~a~~~~g~s~   77 (91)
T d1fnaa_           7 AATPTSLLISWDAPA-VTVRYYRITYGETGGNSPVQEFTVPGSK--------STATISGLKPGVDYTITVYAVTGRGDSP   77 (91)
T ss_dssp             EECSSCEEEECCCCS-SCCSEEEEEEEETTCCSCCEEEEEETTC--------CEEEECSCCTTCEEEEEEEEECTTCCSS
T ss_pred             EeCCCEEEEEEEccc-eEecEEEEEEEcCCCCceeEEEEeCCCc--------cEEEeCCCCCCCEEEEEEEEEeCCccCC
Confidence            356789999999754 4678999999887633334444444433        7899999999999999999999999987


Q ss_pred             CCc
Q psy12131        232 PSK  234 (245)
Q Consensus       232 ~s~  234 (245)
                      ++.
T Consensus        78 ~~s   80 (91)
T d1fnaa_          78 ASS   80 (91)
T ss_dssp             CSC
T ss_pred             CcC
Confidence            654

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.03  E-value=2e-09  Score=63.16  Aligned_cols=72  Identities=11%  Similarity=0.169  Sum_probs=58.4

Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      ....+++.|+|.+.. +++.+|.++|+... ...|.........        ..+.+.+|.+++.|.|+|.|.|..|.|.
T Consensus        11 ~v~~~s~~l~W~~~~-~~~~~Y~i~~~~~~-~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~V~a~~~~g~s~   80 (88)
T d1qr4a2          11 DITENSATVSWTPPR-SRVDSYRVSYVPIT-GGTPNVVTVDGSK--------TRTKLVKLVPGVDYNVNIISVKGFEESE   80 (88)
T ss_dssp             SCCSSCEEEEECCCS-SCCSEEEEEEEETT-CCCCEEEEEETTC--------CEEEECSCCSSCEEEEEEEEEETTEECC
T ss_pred             EecCCEEEEEEEccc-EeeceEEEEEEecc-CCceEEEEecCCc--------cEEEECCCCCCCEEEEEEEEEeCCCCcC
Confidence            356789999999753 47889999999876 5556655554443        7899999999999999999999999987


Q ss_pred             CC
Q psy12131        232 PS  233 (245)
Q Consensus       232 ~s  233 (245)
                      +.
T Consensus        81 p~   82 (88)
T d1qr4a2          81 PI   82 (88)
T ss_dssp             CE
T ss_pred             CE
Confidence            74

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=4.4e-09  Score=62.34  Aligned_cols=79  Identities=25%  Similarity=0.313  Sum_probs=61.5

Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      .....++.|+|.++. +++.+|.+.|+...  ..+.........        .++.+.+|.+++.|.|+|.|.|..|.|.
T Consensus        12 ~~~~~sv~l~W~~p~-~~~~~Y~v~~~~~~--~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~V~a~~~~g~s~   80 (93)
T d2cuma1          12 EVTPRTALLTWTEPP-VRPAGYLLSFHTPG--GQTQEILLPGGI--------TSHQLLGLFPSTSYNARLQAMWGQSLLP   80 (93)
T ss_dssp             SCCSSCEEEEEECCS-SCCSEEEEEEECTT--SCEEEEEECSSC--------SEEEECSCCTTCEEEEEEEEEBTTBCCC
T ss_pred             EeCCCEEEEEEEccc-cccccEEEEEEccc--cccEEEEECCCc--------cEEEEeCccCCCEEEEEEEEEeCCCCCC
Confidence            366789999999853 46789999998853  445455544433        7899999999999999999999999998


Q ss_pred             CCcceEEecCC
Q psy12131        232 PSKAYVFATEG  242 (245)
Q Consensus       232 ~s~~~~~~t~~  242 (245)
                      ++ ...++|.+
T Consensus        81 ~~-~~~~tT~g   90 (93)
T d2cuma1          81 PV-STSFTTGG   90 (93)
T ss_dssp             CE-EEEEECCC
T ss_pred             CE-EEEEEeCC
Confidence            76 45666654

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=3e-09  Score=63.08  Aligned_cols=78  Identities=18%  Similarity=0.127  Sum_probs=60.8

Q ss_pred             cCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12131        153 LGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP  232 (245)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~  232 (245)
                      ....++.|.|.++ ..++.+|.+.|+.......+.........        ..+++.+|.+++.|.|+|.|.|..|.|.+
T Consensus        15 v~~~si~v~W~~p-~~~~~~y~i~~~~~~~~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~v~V~a~~~~g~s~~   85 (93)
T d1tdqa1          15 VSDTVAFVEWTPP-RAKVDFILLKYGLVGGEGGKTTFRLQPPL--------SQYSVQALRPGSRYEVSISAVRGTNESDA   85 (93)
T ss_dssp             ECSSCEEEEEECC-SSCCSEEEEEEEESSSSCCCEEEEECTTC--------SEEEECSCCTTCEEEEEEEEEETTEECCC
T ss_pred             eCCCEEEEEEEcc-ccCCCceEEEEEeccCcceeeEEEeCCCc--------eEEEEeCcccceEEEEEEEEEeCCCCcCC
Confidence            5667899999974 34778999999987633444444444443        78999999999999999999999999987


Q ss_pred             CcceEEec
Q psy12131        233 SKAYVFAT  240 (245)
Q Consensus       233 s~~~~~~t  240 (245)
                      +. ..++|
T Consensus        86 ~~-~~~tT   92 (93)
T d1tdqa1          86 SS-TQFTT   92 (93)
T ss_dssp             EE-EEEEC
T ss_pred             EE-EEEEC
Confidence            64 55655

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.8e-09  Score=63.52  Aligned_cols=73  Identities=19%  Similarity=0.210  Sum_probs=56.2

Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      ....+++.|+|.++. +++.+|.+.|+.......+....++...        ..+.|.+|.+++.|.|+|.|.|..|.|.
T Consensus        11 ~vt~~sv~l~W~~p~-~~~~~Y~i~~~~~~~~~~~~~~~v~~~~--------~~~~i~~L~p~t~Y~~~V~a~~~~g~s~   81 (89)
T d1fnfa3          11 DITANSFTVHWIAPR-ATITGYRIRHHPEHFSGRPREDRVPHSR--------NSITLTNLTPGTEYVVSIVALNGREESP   81 (89)
T ss_dssp             SCCSSEEEEEEECCS-SCCSEEEEEEECSCCSSCCEEEEEETTC--------CEEEEESCCTTCEEEEEEEEEETTEECC
T ss_pred             EecCCEEEEEEEeCC-CEEeeEEEEEEECCCCCceEEEEECCCc--------cEEEECCCcccCEEEEEEEEEcCCcCcC
Confidence            466889999999853 4688999999887623333334444333        6899999999999999999999999886


Q ss_pred             CC
Q psy12131        232 PS  233 (245)
Q Consensus       232 ~s  233 (245)
                      +.
T Consensus        82 p~   83 (89)
T d1fnfa3          82 LL   83 (89)
T ss_dssp             CE
T ss_pred             CE
Confidence            64

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=9.9e-12  Score=75.54  Aligned_cols=86  Identities=14%  Similarity=0.134  Sum_probs=62.0

Q ss_pred             cccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCC
Q psy12131        151 RRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG  228 (245)
Q Consensus       151 ~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G  228 (245)
                      .....+++.|+|.+  ..++++.+|.++|+... ...+........     ......+.+.+|.+. .|.|+|.|.|..|
T Consensus        14 ~~~~~~sv~l~W~pP~~~ng~i~~Y~v~y~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~L~~~-tY~~rV~A~n~~G   86 (102)
T d2dtge1          14 EIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYG-DEELHLCDTRKH-----FALERGCRLRGLSPG-NYSVRIRATSLAG   86 (102)
T ss_dssp             CSSSSSCCCCCCCCCCSCSSCEEEECCCCBSSS-BCCCCCCCCSSS-----CCCTTCCCCCSCCSS-EECCCCCEEETTB
T ss_pred             EEECCCEEEEEEEeCCCCcceEEEeeeEEEecC-CCCceeeeeeec-----ccceEEEEEecccee-eEEEEEEEEcCCc
Confidence            34677899999997  44578999999998765 222211111000     011256788899886 5999999999999


Q ss_pred             CCCCCcceEEecCCC
Q psy12131        229 WSRPSKAYVFATEGA  243 (245)
Q Consensus       229 ~~~~s~~~~~~t~~~  243 (245)
                      .|.+|+.+.|.+++.
T Consensus        87 ~g~~S~~v~f~~~e~  101 (102)
T d2dtge1          87 NGSWTEPTYFYVTDY  101 (102)
T ss_dssp             CCCCCCCCEECCCCC
T ss_pred             cCCCCCCEEEEccCC
Confidence            999999999999764

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.6e-09  Score=62.96  Aligned_cols=78  Identities=23%  Similarity=0.215  Sum_probs=60.9

Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      .....++.|.|.++. .++..|.++|+... +..+.........        ..+.+.+|.+++.|.|+|.|.|..|.|.
T Consensus        12 ~~~~~si~v~W~~p~-~~~~~Y~i~~~~~~-~~~~~~~~~~~~~--------~~~~i~~L~p~t~Y~~~V~a~~~~g~s~   81 (90)
T d1fnha2          12 DATETTITISWRTKT-ETITGFQVDAVPAN-GQTPIQRTIKPDV--------RSYTITGLQPGTDYKIYLYTLNDNARSS   81 (90)
T ss_dssp             EECSSEEEEEEECCS-SCCCCEEEEEEESS-SSCCEEEECCTTC--------SEEEEESCCTTCEEEEEEEEEETTEECC
T ss_pred             EecCCEEEEEEECCC-CCCceeEEEEEEcc-CCceEEEecCCCc--------cEEEeCCCCCCcEEEEEEEEEeCCCCcC
Confidence            477889999999743 47889999998875 4556555554443        7899999999999999999999999987


Q ss_pred             CCcceEEec
Q psy12131        232 PSKAYVFAT  240 (245)
Q Consensus       232 ~s~~~~~~t  240 (245)
                      +. .+.++|
T Consensus        82 p~-~~~~~T   89 (90)
T d1fnha2          82 PV-VIDAST   89 (90)
T ss_dssp             CE-EEEEEC
T ss_pred             CE-EEEEEC
Confidence            53 455554

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=6.6e-10  Score=66.33  Aligned_cols=89  Identities=17%  Similarity=0.002  Sum_probs=60.4

Q ss_pred             cCCCCccccCccccCCCeeEEEEEeCCC-CCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEE
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQVDTY-SGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE  218 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  218 (245)
                      .|.+|....... ....++.|.|.+..+ ...+.|.+.++... ...|.........       ...+.+.+|.+++.|.
T Consensus         3 PP~~P~n~~~~~-~~~~si~~~W~p~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~L~~~~~Y~   73 (95)
T d1bqua1           3 PPEKPKNLSCIV-NEGKKMRCEWDGGRETHLETNFTLKSEWAT-HKFADCKAKRDTP-------TSCTVDYSTVYFVNIE   73 (95)
T ss_dssp             CCCCCEEEEEEE-ETTSCCEEEEECCSCCSSCCEEEEEEEETT-EECCCEECCSSCT-------TEEECSSCCCTTSCEE
T ss_pred             CcCCCeeeEEEE-ccCCEEEEEEeCcccCCCceEEEEEEEEcc-cceeEeecccccc-------eeeeeeeecCCCcEEE
Confidence            356666555543 567889999999332 23478999998865 2333222222222       1667788999999999


Q ss_pred             EEEEEEecCCCCCCCcceEE
Q psy12131        219 ASVLAKNRFGWSRPSKAYVF  238 (245)
Q Consensus       219 ~~v~a~N~~G~~~~s~~~~~  238 (245)
                      |+|.|.|.+|.+. |..+.+
T Consensus        74 f~V~A~N~~G~s~-S~~v~~   92 (95)
T d1bqua1          74 VWVEAENALGKVT-SDHINF   92 (95)
T ss_dssp             EEEEEEETTEEEE-CCCEEE
T ss_pred             EEEEEEeCCcccc-CCCeec
Confidence            9999999999986 445544

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=2.5e-09  Score=65.28  Aligned_cols=95  Identities=17%  Similarity=0.092  Sum_probs=59.6

Q ss_pred             cCCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeec---CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCC
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFRERE---ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLF  214 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~  214 (245)
                      .|.+|............+++|.|.+  +++.+ +.|.+.|....   ....|........    .......+.+.+|.+.
T Consensus         4 PP~~P~~v~~i~~~~~~sv~~sW~p~~d~~~~-~~y~~~y~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~L~~~   78 (107)
T d1cd9b1           4 PPASPSNLSCLMHLTTNSLVCQWEPGPETHLP-TSFILKSFRSRADCQYQGDTIPDCVAK----KRQNNCSIPRKNLLLY   78 (107)
T ss_dssp             CCCCCEEEEEEEETTTTEEEEEEECCSCCSSC-CEEEEEEEECCGGGCSCCCEEEEEECC----TTCCEEEEEGGGCCTT
T ss_pred             ccCCCcCCEEEEecCCCEEEEEEcCCCCCCCC-cceeEEEEEeecccceeeeeeeeeccc----cCccccEEEcCCCCcC
Confidence            3556665543334567899999998  33445 45666665443   1122222111111    1122378999999999


Q ss_pred             ceEEEEEEEEecCCCCCCCcceEEec
Q psy12131        215 TQYEASVLAKNRFGWSRPSKAYVFAT  240 (245)
Q Consensus       215 ~~y~~~v~a~N~~G~~~~s~~~~~~t  240 (245)
                      +.|.|||.|.|.+|.+. |..+.+.-
T Consensus        79 t~Y~frV~A~N~~G~s~-S~~~~~~~  103 (107)
T d1cd9b1          79 QYMAIWVQAENMLGSSE-SPKLCLDP  103 (107)
T ss_dssp             SCEEEEEEEEETTEEEE-CCCEEECG
T ss_pred             ceEEEEEEEEeCCcccc-CCCEEccc
Confidence            99999999999999986 55665543

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=3.5e-09  Score=62.66  Aligned_cols=81  Identities=16%  Similarity=0.156  Sum_probs=59.0

Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      .....++.|.|.++. .++.+|.+.|+... ...+.........     .....+.|.+|.+++.|.|+|.|.|..|.|.
T Consensus        11 ~~~~~sv~v~W~~p~-~~~~~y~v~y~~~~-~~~~~~~~~~~~~-----~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~   83 (92)
T d1tdqa2          11 SRTATSLDLEWDNSE-AEAQEYKVVYSTLA-GEQYHEVLVPKGI-----GPTTKTTLTDLVPGTEYGVGISAVMNSKQSI   83 (92)
T ss_dssp             EECSSCEEEEEECCS-SCCSEEEEEEEETT-CCCCEEEEEECCS-----SSEEEEEECSCCTTCEEEEEEEEEETTEECC
T ss_pred             EecCCEEEEEEEecC-CcccceEEEEEEcC-CCcceeeEEEecC-----CCeeEEEECCccCCCEEEEEEEEEeCCCEec
Confidence            356788999999853 46889999999865 3333322211110     1237899999999999999999999999998


Q ss_pred             CCcceEEec
Q psy12131        232 PSKAYVFAT  240 (245)
Q Consensus       232 ~s~~~~~~t  240 (245)
                      ++ .+.++|
T Consensus        84 p~-~~~~~T   91 (92)
T d1tdqa2          84 PA-TMNART   91 (92)
T ss_dssp             CE-EEEEEC
T ss_pred             CE-EEEEEC
Confidence            76 566665

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.98  E-value=8.7e-09  Score=60.19  Aligned_cols=77  Identities=22%  Similarity=0.295  Sum_probs=59.4

Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      .....++.|.|.++. +++.+|.+.|+...  ..+..+......        ..+.+.+|.+++.|.|+|.|.|..|.|.
T Consensus        10 ~~t~~sv~v~W~~p~-~~~~~Y~v~~~~~~--~~~~~~~~~~~~--------~~~~~~~L~p~t~Y~v~V~a~~~~~~s~   78 (87)
T d1qr4a1          10 DPTETTLSLRWRRPV-AKFDRYRLTYVSPS--GKKNEMEIPVDS--------TSFILRGLDAGTEYTISLVAEKGRHKSK   78 (87)
T ss_dssp             SCCSSEEEEEEECCS-SCCSEEEEEEECTT--CCEEEEEECTTC--------SEEEEESCCSSCEEEEEEEEESSSCBCC
T ss_pred             EecCCEEEEEEECCC-CCcceeEEEeecCC--cceeEEeCCCCc--------CEEEECCCCcCCEEEEEEEEEcCCCCcc
Confidence            356789999999853 46789999998854  344445544433        6899999999999999999999999988


Q ss_pred             CCcceEEec
Q psy12131        232 PSKAYVFAT  240 (245)
Q Consensus       232 ~s~~~~~~t  240 (245)
                      ++ .+.++|
T Consensus        79 ~~-~~~~~T   86 (87)
T d1qr4a1          79 PT-TIKGST   86 (87)
T ss_dssp             CE-EEEEEC
T ss_pred             CE-EEEEEc
Confidence            75 455555

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.2e-09  Score=65.02  Aligned_cols=77  Identities=17%  Similarity=0.245  Sum_probs=56.5

Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      ....+++.|.|.++. .++.+|.+.|+... ...+.........       ...+.+.+|.+++.|.|+|.|.|..|.|.
T Consensus        12 ~vt~~sv~l~W~~p~-~~~~~y~i~~~~~~-~~~~~~~~~~~~~-------~~~~~i~~L~p~t~Y~~~V~a~~~~g~S~   82 (94)
T d1j8ka_          12 DVDVDSIKIAWESPQ-GQVSRYRVTYSSPE-DGIHELFPAPDGE-------EDTAELQGLRPGSEYTVSVVALHDDMESQ   82 (94)
T ss_dssp             EEETTEEEEECCCCS-SCCSCEEEEEEETT-TEEEEECCCCCSS-------CCEEEECSCCCCSEEEEEEEECSSSCCCC
T ss_pred             EecCCEEEEEEeCCC-ccccceEEEEEeec-CCCceEEEecCCC-------ccEEEECCCCCCCEEEEEEEEEeCCCCcC
Confidence            466789999999753 36789999998864 3333322222222       27899999999999999999999999987


Q ss_pred             CCcceE
Q psy12131        232 PSKAYV  237 (245)
Q Consensus       232 ~s~~~~  237 (245)
                      +.....
T Consensus        83 p~~~~~   88 (94)
T d1j8ka_          83 PLIGTQ   88 (94)
T ss_dssp             CEEEEE
T ss_pred             CEEEEE
Confidence            764433

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.9e-10  Score=71.49  Aligned_cols=91  Identities=14%  Similarity=0.157  Sum_probs=59.2

Q ss_pred             CCCCccccCccccCCCeeEEEEEeCC--------CCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCC
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQVDT--------YSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQ  212 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~  212 (245)
                      |.+|............++.|+|.+..        ...+..|.+++.    +..+........       ....+.|.+|.
T Consensus        11 p~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~~----~~~~~~~~~~~~-------~~~~~~i~~L~   79 (117)
T d2cspa1          11 PAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAK----GQRVAEVIFPTA-------DSTAVELVRLR   79 (117)
T ss_dssp             CCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESS----SSEEEEECCTTC-------SEEEEESHHHH
T ss_pred             CCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEee----cccceeeeeecc-------ceeeeeccCCC
Confidence            34555443322244568999999721        133455554321    222333322222       23678899999


Q ss_pred             CCceEEEEEEEEecCCCCCCCcceEEecCC
Q psy12131        213 LFTQYEASVLAKNRFGWSRPSKAYVFATEG  242 (245)
Q Consensus       213 ~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~  242 (245)
                      +++.|.|+|+|.|..|.|..|..+.+.|..
T Consensus        80 ~~t~Y~v~V~A~n~~G~s~~S~~v~i~t~~  109 (117)
T d2cspa1          80 SLEAKGVTVRTLSAQGESVDSAVAAVPPEL  109 (117)
T ss_dssp             HHTCSCBEEEEEESSCCCCCCSCBCCCHHH
T ss_pred             CCcEEEEEEEEEcCCCcCCCCCCEEeeCCC
Confidence            999999999999999999999999888753

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.9e-09  Score=64.20  Aligned_cols=88  Identities=15%  Similarity=-0.001  Sum_probs=52.0

Q ss_pred             cCCCCccccCccccCCCeeEEEEEeCC--CC---CceEEEEEEEeecCCCCeEEE-eeCCCCCCCcceeeeEEEecCCCC
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQVDT--YS---GIIQYLLKFREREELTPWRNI-VIPSDGSLAGPIYTQSYNITGLQL  213 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~  213 (245)
                      +|.+|..+... ....+++.|+|..+.  +.   ....|.+.|+... ...|... ......      ....+.+.+|.+
T Consensus         1 kP~~P~~l~v~-~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~-~~~~~~~~~~~~~~------~~~~~~i~~L~p   72 (101)
T d1iarb2           1 KPRAPGNLTVH-TNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSEN-DPADFRIYNVTYLE------PSLRIAASTLKS   72 (101)
T ss_dssp             CCCCCEEEEEC-----CCEEEEEECSSCTTSTTGGGCEEEEEEEESS-SCSCEEEEEECSSC------CEEEECC-----
T ss_pred             CcccCCcCEEE-EEeCCeEEEEEccccCCCCccceeeEEEEeeeccc-ceeeeeeeeeccCc------cceEEEECCCCC
Confidence            35666655443 356779999999732  11   2356999998875 3333332 222111      126788999999


Q ss_pred             CceEEEEEEEEecCCCCCCCcc
Q psy12131        214 FTQYEASVLAKNRFGWSRPSKA  235 (245)
Q Consensus       214 ~~~y~~~v~a~N~~G~~~~s~~  235 (245)
                      ++.|.|||+|.|..|.|.+|+.
T Consensus        73 ~t~Y~~rVrA~~~~g~g~wSew   94 (101)
T d1iarb2          73 GISYRARVRAWAQAYNTTWSEW   94 (101)
T ss_dssp             CCCEEEEEEEECGGGTCCCCCC
T ss_pred             CCEEEEEEEEEcCCCCCCCcCC
Confidence            9999999999999998776653

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=8.9e-10  Score=65.86  Aligned_cols=50  Identities=28%  Similarity=0.483  Sum_probs=43.2

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCe
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   51 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~   51 (245)
                      .+..+..+.+.|.|.+++.+|+|.|+|.|.|..|...+..+.|.|..+|.
T Consensus        47 ~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~~~Ps   96 (96)
T d1l6za2          47 ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPS   96 (96)
T ss_dssp             TTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEECCSCC
T ss_pred             cceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEEcCCC
Confidence            46677777888999999999999999999999887567789999988873

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=9.2e-09  Score=59.94  Aligned_cols=72  Identities=22%  Similarity=0.304  Sum_probs=55.6

Q ss_pred             cCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12131        153 LGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP  232 (245)
Q Consensus       153 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~  232 (245)
                      ....++.|+|.++. +.+.+|.+.|+... +. +.........        ..+.+.+|.+++.|.|+|.|.|..|.|.+
T Consensus        12 ~~~~s~~l~W~~p~-~~~~~Y~v~~~~~~-~~-~~~~~~~~~~--------~~~~~~~L~p~t~Y~v~V~a~~~~~~s~p   80 (86)
T d1tdqa3          12 SSETSISLIWTKAS-GPIDHYRITFTPSS-GI-SSEVTVPRDR--------TSYTLTDLEPGAEYIISITAERGRQQSLE   80 (86)
T ss_dssp             ECSSCEEEEEECCC-SCCSEEEEEEECSS-SC-CEEEEEESSC--------SEEEECCCCTTCCEEEEEEEEETTEECCC
T ss_pred             ecCCEEEEEEeCCC-CCccceEEEEeccc-cc-ceEEEeCCCc--------cEEEECCCccccEEEEEEEEEcCCCEECC
Confidence            56788999999853 46789999998754 23 2333333332        68999999999999999999999999887


Q ss_pred             Ccc
Q psy12131        233 SKA  235 (245)
Q Consensus       233 s~~  235 (245)
                      +..
T Consensus        81 ~~~   83 (86)
T d1tdqa3          81 STV   83 (86)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            654

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=5.9e-08  Score=60.79  Aligned_cols=85  Identities=19%  Similarity=0.316  Sum_probs=59.3

Q ss_pred             cceEEecCCCeEEEEEEEeecC---CCeEEEEECCEEe-----------c------cCCcEEEEe---cCceeEEEEccC
Q psy12131         56 KQWIHTAPDMRAEIICNVYANP---PAKVEWFRDGTAI-----------T------LGGRIDMHV---SSEKHSLLVRHI  112 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~---~~~~~w~~~~~~~-----------~------~~~~~~~~~---~~~~~~l~i~~~  112 (245)
                      ...+.+..|+++.|.|.+....   ...+.|++.+...           .      ...+..+..   ...+.+|.|.++
T Consensus         9 ~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v   88 (126)
T d1pkoa_           9 GHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNV   88 (126)
T ss_dssp             SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSC
T ss_pred             CCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEE
Confidence            3346788999999999986433   2468999854210           0      001222221   123578999999


Q ss_pred             CCCCCeEEEEEEEeCCceeEEEEEEEec
Q psy12131        113 KDTDFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus       113 ~~~d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      +.+|+|.|.|.+.+..+.....+.|.+.
T Consensus        89 ~~~D~G~Y~C~v~~~~~~~~~~v~L~V~  116 (126)
T d1pkoa_          89 RFSDEGGYTCFFRDHSYQEEAAVELKVE  116 (126)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             chhHCeEEEEEEEECCCEEEEEEEEEEe
Confidence            9999999999999998888888888876

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=3.2e-09  Score=62.40  Aligned_cols=72  Identities=26%  Similarity=0.407  Sum_probs=53.5

Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSR  231 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~  231 (245)
                      .....++.|.|.++. +++.+|.++|+... ...|.........       ...+.+.+|.+++.|.|+|.|.|..|.|.
T Consensus        11 ~~~~~s~~l~W~~p~-~~i~~Y~i~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~L~p~t~Y~~~V~a~n~~g~S~   81 (89)
T d1fnha3          11 ATTPNSLLVSWQPPR-ARITGYIIKYEKPG-SPPREVVPRPRPG-------VTEATITGLEPGTEYTIYVIALKNNQKSE   81 (89)
T ss_dssp             EEETTEEEEEEECCS-SCCSEEEEEEECTT-SCCEECTTCCCTT-------CCEEEEESCCTTCEEEEEEEEESSSCEEE
T ss_pred             EecCCEEEEEEeCCC-cCCceEEEEEeecc-CCccEEEEEcCCC-------ccEEEEEeeeCCCEEEEEEEEEcCCCEeC
Confidence            356789999999853 46889999998865 3334322211111       26899999999999999999999999875


Q ss_pred             C
Q psy12131        232 P  232 (245)
Q Consensus       232 ~  232 (245)
                      +
T Consensus        82 p   82 (89)
T d1fnha3          82 P   82 (89)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.7e-08  Score=60.54  Aligned_cols=80  Identities=16%  Similarity=0.110  Sum_probs=49.7

Q ss_pred             ecCCCCccccCccccCCCeeEEEEEeCC---CCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCc
Q psy12131        139 GIPNIPVFQKSSRRLGPDGYRLVWQVDT---YSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFT  215 (245)
Q Consensus       139 ~~~~~p~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~  215 (245)
                      +++.||.+..   ...++.+.|+|..+.   ......|.++|+.......+........        ...+.+.+|.++.
T Consensus         4 Vk~~Pp~l~v---~~~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~--------~~~~~l~~L~p~t   72 (100)
T d2gysa4           4 IQMAPPSLQV---TKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQN--------AHSMALPALEPST   72 (100)
T ss_dssp             BCCCCCEEEE---C---CCCEEEEEC--------CEEEEEEEECSSSCSTTSCEEEEES--------CSEEECCCCCSSC
T ss_pred             ccCCCCccEE---EECCCEEEEEEecCcccCCccceEEEEEEeecccceeceeecccCC--------ceEEEeCCCCCCC
Confidence            4566664332   234578999999732   2345689999987652211211111111        2679999999999


Q ss_pred             eEEEEEEEEecCCC
Q psy12131        216 QYEASVLAKNRFGW  229 (245)
Q Consensus       216 ~y~~~v~a~N~~G~  229 (245)
                      .|.|||+|+|..|.
T Consensus        73 ~Y~~rVRa~~~~g~   86 (100)
T d2gysa4          73 RYWARVRVRTSRTG   86 (100)
T ss_dssp             CCEEEEEEEECCTT
T ss_pred             eEEEEEEEEECCCC
Confidence            99999999988874

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=1.9e-08  Score=60.52  Aligned_cols=79  Identities=16%  Similarity=0.201  Sum_probs=56.2

Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeecC--------CCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEE
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFREREE--------LTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLA  223 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a  223 (245)
                      ....+++.|.|.+.. +++..|.|+|+....        ...+........        ..++.|.+|.+++.|.|+|.|
T Consensus        14 ~~t~~sv~v~W~pp~-~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~L~p~t~Y~~~V~a   84 (101)
T d2cuia1          14 DVTTSSLRLNWEAPP-GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGT--------RHSAVLRDLRSGTLYSLTLYG   84 (101)
T ss_dssp             SCCSSCEEEECCCCT-TSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETT--------CCEEEECSCCTTCEEEEEEEE
T ss_pred             EECCCEEEEEEEecc-ccccceEEEEEecCCCceeeccCCcceeEeecccc--------eeEEEeCCCCcCCEEEEEEEE
Confidence            466789999998743 468899999987651        111122222222        268899999999999999999


Q ss_pred             EecCCCCCCCcceEEec
Q psy12131        224 KNRFGWSRPSKAYVFAT  240 (245)
Q Consensus       224 ~N~~G~~~~s~~~~~~t  240 (245)
                      .|..|.|.++ ...++|
T Consensus        85 ~~~~g~g~~~-~~~~~T  100 (101)
T d2cuia1          85 LRGPHKADSI-QGTART  100 (101)
T ss_dssp             ECSSSEEEEE-EEEEEC
T ss_pred             EeCCcEeCCe-EEEeEE
Confidence            9999998875 334444

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=2.1e-08  Score=59.84  Aligned_cols=79  Identities=15%  Similarity=0.252  Sum_probs=55.3

Q ss_pred             eEEecCCCeEEEEEEEeec-CC-CeEEEEECCEEecc----------CCcEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         58 WIHTAPDMRAEIICNVYAN-PP-AKVEWFRDGTAITL----------GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~-~~-~~~~w~~~~~~~~~----------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      .+....|+++.|.|..... .. ..|.|++++..+..          ..+..+.   .+.+|+|.+++.+|.|.|+|.+.
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~---~ngSL~I~nl~~~DsG~Y~c~v~   80 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEIL---ANGDLKIKNLTRDDSGTYNVTVY   80 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEEC---TTSCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEEC---CCccEEEeCCCHHHCEEEEEEEE
Confidence            3556789999999964322 22 47999998866531          1122221   23579999999999999999999


Q ss_pred             eCCcee--EEEEEEEe
Q psy12131        126 NNLGSS--QQFIQLSG  139 (245)
Q Consensus       126 n~~g~~--~~~~~~~~  139 (245)
                      +..|..  .+.+.|.+
T Consensus        81 ~~~g~~~~~~~~~L~V   96 (98)
T d1hnga1          81 STNGTRILNKALDLRI   96 (98)
T ss_dssp             ETTCCEEEEEEEEEEE
T ss_pred             eCCCCEEEEEEEEEEE
Confidence            988865  45666654

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.75  E-value=4.7e-09  Score=61.39  Aligned_cols=46  Identities=15%  Similarity=0.243  Sum_probs=37.4

Q ss_pred             eEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecC
Q psy12131          4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP   49 (245)
Q Consensus         4 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~   49 (245)
                      +.....+..|.|.+++.+|+|.|+|.|.|..|...+..+.|.|+.|
T Consensus        42 ~~~~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          42 KKFSRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             EEEESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEECCC
T ss_pred             ccccccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEeCC
Confidence            3444456679999999999999999999988765677888888765

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.1e-09  Score=63.07  Aligned_cols=44  Identities=20%  Similarity=0.378  Sum_probs=38.0

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCe
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   51 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~   51 (245)
                      .....|.|.+++.+|+|.|+|.|.|..+...+..+.|+|..+|.
T Consensus        46 ~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~~Pr   89 (89)
T d1f2qa2          46 YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR   89 (89)
T ss_dssp             CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             cccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEeCCC
Confidence            34567999999999999999999998776567889999998874

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.74  E-value=6.8e-09  Score=60.82  Aligned_cols=46  Identities=15%  Similarity=0.270  Sum_probs=37.7

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   48 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~   48 (245)
                      .+.....+..|.|.+++.+|+|.|+|.|.|..+...+..+.|+|.+
T Consensus        43 ~~~~~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          43 DRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ   88 (89)
T ss_dssp             EEEEEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ccceeccccccEECccceeccceEEEEEEeCCCCeEEeeEEEEEEe
Confidence            3455556677999999999999999999998876567788888865

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=1.8e-08  Score=60.11  Aligned_cols=45  Identities=20%  Similarity=0.330  Sum_probs=36.0

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEe
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVI   47 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~   47 (245)
                      +|..+..+ .+|+|.+++.+|+|.|+|.+.+..|.. ..+++.|.|.
T Consensus        52 ~~~~~~~n-gSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          52 GAFEILAN-GDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             TTEEECTT-SCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEE
T ss_pred             CeEEECCC-ccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEEE
Confidence            34445444 459999999999999999999988874 4778888885

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.6e-08  Score=58.59  Aligned_cols=44  Identities=14%  Similarity=0.226  Sum_probs=37.4

Q ss_pred             EEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCC
Q psy12131          6 LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP   50 (245)
Q Consensus         6 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p   50 (245)
                      +..++..|.|.+++.+|+|.|+|.|.|..|. ....+.|.|...|
T Consensus        40 ~~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~-~~~~~~v~V~~~~   83 (84)
T d2nxyb2          40 NIQGGKTLSVSQLELQDSGTWTCTVLQNQKK-VEFKIDIVVLAFQ   83 (84)
T ss_dssp             EEEESSEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEECEECCC
T ss_pred             ceeeeeeeeeeecccccccEEEEEEEeCCCE-EEEEEEEEEEecC
Confidence            4456677999999999999999999999887 6778888887655

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.4e-07  Score=56.50  Aligned_cols=84  Identities=10%  Similarity=0.027  Sum_probs=61.4

Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      ...|+.+.|.|...+.++. . ..|+++..  .......+.....        ...|.|.++...+.+.|+|.|.|.+|.
T Consensus        12 v~~G~~~~l~C~v~g~p~p-~-v~W~k~~~~l~~~~~~~~~~~~~--------~~~L~I~~~~~~D~G~Y~C~a~N~~G~   81 (101)
T d2cqva1          12 VRAGESVELFGKVTGTQPI-T-CTWMKFRKQIQESEHMKVENSEN--------GSKLTILAARQEHCGCYTLLVENKLGS   81 (101)
T ss_dssp             EETTCCEEEEEEEESSSSC-E-EEEEESSSBCCCSSSEEEEECSS--------EEEEEETTCCTTTCEEEEEEEECSSCE
T ss_pred             EeCCCcEEEEEEEEecCCC-E-EEEEeCceeeccCCcEEEEEecc--------eeEEEEeeCCcccCEEEEEEEEECCCE
Confidence            4678899999999776543 2 33566554  2222233333222        267999999999999999999999999


Q ss_pred             CCCCcceEEecCCCCC
Q psy12131        230 SRPSKAYVFATEGAET  245 (245)
Q Consensus       230 ~~~s~~~~~~t~~~~~  245 (245)
                      ...+..+.+...|.||
T Consensus        82 ~~~~~~l~V~~~P~pP   97 (101)
T d2cqva1          82 RQAQVNLTVVDKPDPP   97 (101)
T ss_dssp             EECCEEEEEECSCSCC
T ss_pred             EEEEEEEEEEecCCCc
Confidence            9999999998888765

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=6e-08  Score=60.54  Aligned_cols=83  Identities=25%  Similarity=0.459  Sum_probs=56.3

Q ss_pred             ceEEecCCCeEEEEEEEeecCC----CeEEEEECCEE-------e---------c-----cCCcEEEEe---cCceeEEE
Q psy12131         57 QWIHTAPDMRAEIICNVYANPP----AKVEWFRDGTA-------I---------T-----LGGRIDMHV---SSEKHSLL  108 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~~----~~~~w~~~~~~-------~---------~-----~~~~~~~~~---~~~~~~l~  108 (245)
                      ..+.+.+|+++.|.|.+...+.    ..+.|++....       +         .     ...+..+..   ......|+
T Consensus        12 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~   91 (124)
T d1eaja_          12 EMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASIN   91 (124)
T ss_dssp             EEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEE
T ss_pred             ceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEE
Confidence            3466789999999999875433    25889862110       0         0     011222211   11245799


Q ss_pred             EccCCCCCCeEEEEEEEeCCceeEEEEEEEe
Q psy12131        109 VRHIKDTDFGNYMCQASNNLGSSQQFIQLSG  139 (245)
Q Consensus       109 i~~~~~~d~g~y~C~~~n~~g~~~~~~~~~~  139 (245)
                      |.+++.+|.|.|.|.+.+..+.....+.|.+
T Consensus        92 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V  122 (124)
T d1eaja_          92 VTNLQLSDIGTYQCKVKKAPGVANKKIHLVV  122 (124)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EcccEEccCEEEEEEEEECCCeEEeEEEEEE
Confidence            9999999999999999999887777777765

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=5.8e-08  Score=57.38  Aligned_cols=86  Identities=13%  Similarity=0.071  Sum_probs=53.3

Q ss_pred             cCCCCccccCccccCCCeeEEEEEeCCCC------CceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCC
Q psy12131        140 IPNIPVFQKSSRRLGPDGYRLVWQVDTYS------GIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQL  213 (245)
Q Consensus       140 ~~~~p~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~  213 (245)
                      +|.||..+..........+.|+|..+...      -.+.|.++|+... ...|........         ..   ..|.+
T Consensus         1 KPdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~-~~~~~~~~~~~~---------t~---~~L~p   67 (94)
T d3d85d3           1 KPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKS-KREKKDRVFTDK---------TS---ATVIC   67 (94)
T ss_dssp             CCCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC-------CEEEESS---------SE---EEECC
T ss_pred             CCCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECC-CCccEEeccccc---------eE---EEecC
Confidence            36777665543323345699999984321      2578999998764 556655444322         22   24678


Q ss_pred             CceEEEEEEEEecCCCCCCCcceEE
Q psy12131        214 FTQYEASVLAKNRFGWSRPSKAYVF  238 (245)
Q Consensus       214 ~~~y~~~v~a~N~~G~~~~s~~~~~  238 (245)
                      +..|.|+|+|++..|.|.+|+-..+
T Consensus        68 ~~~Y~v~VRa~~~~~~g~WSeWS~~   92 (94)
T d3d85d3          68 RKNASISVRAQDRYYSSSWSEWASV   92 (94)
T ss_dssp             CSSCEEEEEEEESSSCCCCCCCEEE
T ss_pred             CCCEEEEEEEecCCCCCCCccCcCC
Confidence            9999999999999999999886544

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=6.1e-09  Score=65.40  Aligned_cols=90  Identities=19%  Similarity=0.288  Sum_probs=62.1

Q ss_pred             ccCCCeeEEEEEeC---CCCCceEEEEEEEeecC-------------CCCeEEEeeCCC--CCCCcceeeeEEEecCCCC
Q psy12131        152 RLGPDGYRLVWQVD---TYSGIIQYLLKFREREE-------------LTPWRNIVIPSD--GSLAGPIYTQSYNITGLQL  213 (245)
Q Consensus       152 ~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~--~~~~~~~~~~~~~i~~l~~  213 (245)
                      .....++.|+|.++   .++.+.+|.|.|+....             .+.|........  ...........+.|.+|.+
T Consensus        12 ~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p   91 (125)
T d2dtge3          12 RTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKP   91 (125)
T ss_dssp             EECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCCEEEECSCCS
T ss_pred             EecCCEEEEEEeCCCccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccCEEEECCCcc
Confidence            46788999999972   34678999999987641             011211110000  0001122347899999999


Q ss_pred             CceEEEEEEEEecCCC-----CCCCcceEEecC
Q psy12131        214 FTQYEASVLAKNRFGW-----SRPSKAYVFATE  241 (245)
Q Consensus       214 ~~~y~~~v~a~N~~G~-----~~~s~~~~~~t~  241 (245)
                      .+.|.|+|.|.|..|.     |..|..+.++|.
T Consensus        92 ~T~Y~~~V~A~n~~G~~~~~~g~~S~~v~~~T~  124 (125)
T d2dtge3          92 WTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTD  124 (125)
T ss_dssp             SCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCC
T ss_pred             CCEEEEEEEEEeCCCccCCCCCCCcccEEEEcC
Confidence            9999999999999995     778999998885

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=1.7e-08  Score=63.73  Aligned_cols=41  Identities=24%  Similarity=0.383  Sum_probs=35.1

Q ss_pred             EeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec
Q psy12131          7 LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   48 (245)
Q Consensus         7 ~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~   48 (245)
                      ..+.+.|.|.+++.+|+|.|+|.|.|..|. .++.+.|.|.+
T Consensus        90 ~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~d  130 (130)
T d1gxea_          90 TKDRSIFTVEGAEKEDEGVYTVTVKNPVGE-DQVNLTVKVID  130 (130)
T ss_dssp             ETTEEEEECSCCCTTTCEEEEEEEECSSCE-EEEEEEEEECC
T ss_pred             CCCEEEEEECcCChhcCEEEEEEEEECCCE-EEEEEEEEEEC
Confidence            334466999999999999999999999998 78888888853

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2e-08  Score=58.85  Aligned_cols=41  Identities=20%  Similarity=0.165  Sum_probs=34.5

Q ss_pred             EEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          6 LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         6 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      .....+.|.|.+++.+|+|.|+|.|.|..|. ...++.|.|.
T Consensus        50 ~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~-~~~s~~l~Vy   90 (90)
T d1gsma1          50 SDTGRSVLTVRNASLSAAGTRVCVGSCGGRT-FQHTVQLLVY   90 (90)
T ss_dssp             EESSEEEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             ccCceeeEEcCccChhhCCcEEEEEEeCCCc-EEEEEEEEEC
Confidence            3445577999999999999999999998876 7888888773

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=6.4e-08  Score=59.09  Aligned_cols=98  Identities=15%  Similarity=0.037  Sum_probs=54.7

Q ss_pred             CCCCccccCccccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEE
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE  218 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  218 (245)
                      |..|.+.....+..|+.+.|.|.+....|...+. |+++..  ........................+.|.++...+.+.
T Consensus         3 P~~p~~~~~~~v~~G~~v~L~C~~~~g~p~~~v~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~   81 (110)
T d1f97a2           3 PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYS-WFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGE   81 (110)
T ss_dssp             CCCCEEECCSEEETTSCEEEEEECSCCBSCCEEE-EEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEE
T ss_pred             CccceeCCCCEEecCCeEEEEEEeecCCCCCEEE-EEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEE
Confidence            4444444444567899999999984322333333 444432  0111111111111000011112467899999999999


Q ss_pred             EEEEEEecCCCCCCCcceEEe
Q psy12131        219 ASVLAKNRFGWSRPSKAYVFA  239 (245)
Q Consensus       219 ~~v~a~N~~G~~~~s~~~~~~  239 (245)
                      |.|.|.|.+|....|..+++.
T Consensus        82 Y~C~a~N~~G~~~~s~~v~l~  102 (110)
T d1f97a2          82 YYCQAQNGYGTAMRSEAAHMD  102 (110)
T ss_dssp             EEEEEECSSSCCEECCCEEEE
T ss_pred             EEEEEEECCCcEEEEEEEEEE
Confidence            999999999988777665554

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.1e-08  Score=60.47  Aligned_cols=41  Identities=29%  Similarity=0.348  Sum_probs=37.3

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV   52 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~   52 (245)
                      +.|.|.+++..|+|.|+|.|.|..|. .++.+.|.|.++|.+
T Consensus        62 ~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~v~V~~~P~i  102 (103)
T d1wwbx_          62 GCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFMGWPGI  102 (103)
T ss_dssp             EEEEEESCCGGGCEEEEEEEECSSCE-EEEEEEECCSCCCCC
T ss_pred             EEEEECCCCHHhCceEEEEEeccCCE-EEEEEEEEEEeCCCC
Confidence            45999999999999999999999998 799999999888864

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.7e-08  Score=59.03  Aligned_cols=43  Identities=14%  Similarity=0.184  Sum_probs=36.8

Q ss_pred             EEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec
Q psy12131          5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   48 (245)
Q Consensus         5 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~   48 (245)
                      .+...+.+|.|.+++.+|+|.|+|.|.|..|. ....+.|.|..
T Consensus        53 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~-~~~~~~L~V~~   95 (101)
T d1iray1          53 RIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYC-LRIKISAKFVE   95 (101)
T ss_dssp             SEEEETTEEEETTCCGGGCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred             EEeccCCEEEeccceecCCEEEEEEEECCCCe-EEEEEEEEEEe
Confidence            34556678999999999999999999999887 67788888874

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.59  E-value=2.2e-07  Score=57.02  Aligned_cols=77  Identities=12%  Similarity=0.156  Sum_probs=53.0

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--CE---Ee---------ccCCcEEEEe--cCceeEEEEccCCCC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GT---AI---------TLGGRIDMHV--SSEKHSLLVRHIKDT  115 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~---~~---------~~~~~~~~~~--~~~~~~l~i~~~~~~  115 (245)
                      +...+..+.+.+|++++|.|.........+.|++-  +.   .+         ....++....  ......|.|.+++++
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence            34556677888999999999998776778999872  11   11         0012233221  223457999999999


Q ss_pred             CCeEEEEEEEeCC
Q psy12131        116 DFGNYMCQASNNL  128 (245)
Q Consensus       116 d~g~y~C~~~n~~  128 (245)
                      |.|.|.|.+....
T Consensus        84 Dsg~YyCa~~~~~   96 (115)
T d1lp9e1          84 DSALYYCALFLAS   96 (115)
T ss_dssp             GCEEEEEEEEECS
T ss_pred             cCccceEEEEcCC
Confidence            9999999876543

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.2e-08  Score=60.83  Aligned_cols=38  Identities=24%  Similarity=0.268  Sum_probs=32.6

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      ..+|.|.+++.+|+|.|+|.|.|..|...+..+.|.|+
T Consensus        59 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          59 IASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ceEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEEC
Confidence            35699999999999999999999999855666788774

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.59  E-value=4.9e-07  Score=54.44  Aligned_cols=75  Identities=12%  Similarity=0.270  Sum_probs=54.3

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCCCeEEEEEC---CEEe-----------ccCCcEEEEecCceeEEEEccCCCCCC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD---GTAI-----------TLGGRIDMHVSSEKHSLLVRHIKDTDF  117 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~---~~~~-----------~~~~~~~~~~~~~~~~l~i~~~~~~d~  117 (245)
                      +...|..+.+.+|+.++|.|.........+.|++-   ..+.           ....++.....+....|.|.++.++|.
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~Ds   82 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDI   82 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCC
Confidence            34556677889999999999986555557999971   1111           012345555556678999999999999


Q ss_pred             eEEEEEEEe
Q psy12131        118 GNYMCQASN  126 (245)
Q Consensus       118 g~y~C~~~n  126 (245)
                      +.|.|.+..
T Consensus        83 A~YyCa~~~   91 (106)
T d1a0ql1          83 ATYYCLQYY   91 (106)
T ss_dssp             SEEEEEECS
T ss_pred             EeEEEEEeC
Confidence            999998754

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.58  E-value=3.4e-07  Score=55.11  Aligned_cols=74  Identities=15%  Similarity=0.329  Sum_probs=53.5

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEE--CCEEe------------ccCCcEEEEecCceeEEEEccCCCCCCe
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGTAI------------TLGGRIDMHVSSEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g  118 (245)
                      ...|..+.+.+|++++|.|.........+.||+  .+...            ....++.....+....|.|.++..+|.|
T Consensus         5 tQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa   84 (106)
T d1i8ka_           5 TQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVG   84 (106)
T ss_dssp             EEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCE
Confidence            345667778999999999987655556789986  22110            1123555544556778999999999999


Q ss_pred             EEEEEEEe
Q psy12131        119 NYMCQASN  126 (245)
Q Consensus       119 ~y~C~~~n  126 (245)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (106)
T d1i8ka_          85 DYYCLQSF   92 (106)
T ss_dssp             EEEEEECS
T ss_pred             EEeEecCc
Confidence            99998654

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.58  E-value=3.8e-08  Score=58.98  Aligned_cols=42  Identities=24%  Similarity=0.359  Sum_probs=35.7

Q ss_pred             EEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec
Q psy12131          6 LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   48 (245)
Q Consensus         6 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~   48 (245)
                      ...+.+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..
T Consensus        58 ~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~   99 (100)
T d1qz1a3          58 FSDDSSELTIRNVDKNDEAEYVCIAENKAGE-QDASIHLKVFA   99 (100)
T ss_dssp             ECTTSCEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred             eecCceEEEeCCCCcccCEEEEEEEEECCCE-EEEEEEEEEEE
Confidence            3345677999999999999999999999987 67888888864

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.57  E-value=2.6e-07  Score=56.60  Aligned_cols=77  Identities=18%  Similarity=0.389  Sum_probs=54.0

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCCCeEEEEECC--E---Ee---------ccCCcEEEEe--cCceeEEEEccCCCC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDG--T---AI---------TLGGRIDMHV--SSEKHSLLVRHIKDT  115 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~--~---~~---------~~~~~~~~~~--~~~~~~l~i~~~~~~  115 (245)
                      +...|..+.+.+|+.++|.|.........+.|++-.  .   .+         ....++....  ......|.|.++..+
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   82 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence            445666788889999999999877666789999721  1   11         0112233221  234568999999999


Q ss_pred             CCeEEEEEEEeCC
Q psy12131        116 DFGNYMCQASNNL  128 (245)
Q Consensus       116 d~g~y~C~~~n~~  128 (245)
                      |.|.|.|.+....
T Consensus        83 Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          83 DSASYICVVSDRG   95 (114)
T ss_dssp             GCSEEEEEEECSC
T ss_pred             hCcccceeeecCC
Confidence            9999999988643

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.4e-08  Score=57.94  Aligned_cols=42  Identities=17%  Similarity=0.211  Sum_probs=35.3

Q ss_pred             EEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         5 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      ......+.|.|.+++.+|+|.|+|.|.|..|. .+.++.|.|.
T Consensus        48 ~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~-~~~~~~v~V~   89 (90)
T d1vcaa2          48 TNEGTTSTLTMNPVSFGNEHSYLCTATCESRK-LEKGIQVEIY   89 (90)
T ss_dssp             EEETTEEEEEESSCCGGGCSEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             eeecCCcEEEEecccccccceEEEEEEeCCCE-EEEEEEEEEE
Confidence            34445567999999999999999999999987 7888888774

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.57  E-value=4e-07  Score=54.98  Aligned_cols=74  Identities=18%  Similarity=0.413  Sum_probs=54.4

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--CEEe------------ccCCcEEEEecCceeEEEEccCCCCCCe
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GTAI------------TLGGRIDMHVSSEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~~~------------~~~~~~~~~~~~~~~~l~i~~~~~~d~g  118 (245)
                      ...|..+.+.+|++++|.|.........+.|++-  +...            ....++.....+....|.|.+++.+|.|
T Consensus         5 tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d1j1pl_           5 TQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCE
Confidence            3556678889999999999986555567999872  1111            1124566555666789999999999999


Q ss_pred             EEEEEEEe
Q psy12131        119 NYMCQASN  126 (245)
Q Consensus       119 ~y~C~~~n  126 (245)
                      .|.|.+.+
T Consensus        85 ~YyCa~~~   92 (107)
T d1j1pl_          85 MYFCQQAN   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEcCC
Confidence            99997654

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=8e-08  Score=56.17  Aligned_cols=38  Identities=24%  Similarity=0.252  Sum_probs=33.1

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      .+..|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|+
T Consensus        52 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~   89 (89)
T d1gl4b_          52 FNGILTIRNVQPSDAGTYVCTGSNMFAM-DQGTATLHVQ   89 (89)
T ss_dssp             ETTEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEEC
T ss_pred             eceEEEEecCCcccCEEEEEEEEECCCE-EEEEEEEEEC
Confidence            3567999999999999999999999987 6788888773

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=6.1e-07  Score=55.56  Aligned_cols=78  Identities=13%  Similarity=0.363  Sum_probs=56.2

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEE--CCEE------e-cc---------------CCcEEE-EecCc
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGTA------I-TL---------------GGRIDM-HVSSE  103 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~~------~-~~---------------~~~~~~-~~~~~  103 (245)
                      +|.+...|..+.+.+|++++|.|...+.....+.|++  .+..      + ..               ..++.. ...+.
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            4777888888889999999999999877777899987  1111      1 00               012221 22334


Q ss_pred             eeEEEEccCCCCCCeEEEEEEEe
Q psy12131        104 KHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus       104 ~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      ...|+|.+++.+|.|.|.|.+..
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEeC
Confidence            46899999999999999998764

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=5.4e-08  Score=59.75  Aligned_cols=40  Identities=18%  Similarity=0.180  Sum_probs=35.3

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCe
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   51 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~   51 (245)
                      +.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..++.
T Consensus        68 ~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~~~~~  107 (113)
T d2dava1          68 FEMQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLEVHESTG  107 (113)
T ss_dssp             EEEEECSCCTTSCEEEEEEEECSSCE-EEECCEEEEECCCC
T ss_pred             EEEEEccCCHHHCeEEEEEEEeCCCE-EEEEEEEEEEcCCC
Confidence            35999999999999999999999998 68889999986654

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.55  E-value=7.2e-08  Score=56.34  Aligned_cols=42  Identities=24%  Similarity=0.317  Sum_probs=34.2

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +|+.+.  ...|.|.+++..|+|.|+|.|.|..|. ....+.|.|
T Consensus        47 ~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V   88 (89)
T d1biha4          47 GRATVT--DSGLVIKGVKNGDKGYYGCRATNEHGD-KYFETLVQV   88 (89)
T ss_dssp             SSEEEE--TTEEEESSCCSTTCEEEEEEEEETTEE-EEEEEEEEE
T ss_pred             ccEEEe--eeeEEECCCChhhCEEEEEEEEECCCE-EEEEEEEEE
Confidence            345554  345999999999999999999999987 677777776

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.55  E-value=5.5e-08  Score=57.90  Aligned_cols=41  Identities=22%  Similarity=0.405  Sum_probs=35.1

Q ss_pred             EEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         5 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ....+..+|.|.+++.+|+|.|+|.|.|..|. .+.++.|.|
T Consensus        56 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   96 (97)
T d3dara1          56 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDV   96 (97)
T ss_dssp             EEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEE
T ss_pred             EEcCCcEEEEECCCCcccCEEEEEEEEECCCE-EEEEEEEEE
Confidence            34455678999999999999999999999987 678888876

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=7.7e-08  Score=58.72  Aligned_cols=38  Identities=21%  Similarity=0.244  Sum_probs=34.3

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecC
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP   49 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~   49 (245)
                      +.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.++
T Consensus        72 ~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~~~  109 (110)
T d2avga1          72 FELHITDAQPAFTGGYRCEVSTKDKF-DCSNFNLTVHEA  109 (110)
T ss_dssp             EEEEEESCCTTCCEEEEEEEEETTEE-EEEEEEEEEESC
T ss_pred             EEEEEeccCHHHCcEEEEEEEECCCe-EEEEEEEEEEec
Confidence            46999999999999999999999998 788999998753

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.54  E-value=5.4e-07  Score=55.02  Aligned_cols=77  Identities=18%  Similarity=0.380  Sum_probs=53.0

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--CE--Ee----------ccCCcEE--EEecCceeEEEEccCCCC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GT--AI----------TLGGRID--MHVSSEKHSLLVRHIKDT  115 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~--~~----------~~~~~~~--~~~~~~~~~l~i~~~~~~  115 (245)
                      +...|..+.+.+|+.+.|.|...+.....+.|++-  +.  ..          ....++.  .........|.|.++..+
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG   82 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence            34456677888999999999987665567899971  11  11          0111222  222345679999999999


Q ss_pred             CCeEEEEEEEeCC
Q psy12131        116 DFGNYMCQASNNL  128 (245)
Q Consensus       116 d~g~y~C~~~n~~  128 (245)
                      |.|.|.|.+....
T Consensus        83 Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          83 DSATYLCAVRPTS   95 (113)
T ss_dssp             GCEEEEEEEEESS
T ss_pred             CCcEEeEeEecCC
Confidence            9999999987544

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=1.2e-07  Score=56.39  Aligned_cols=38  Identities=18%  Similarity=0.474  Sum_probs=32.7

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      .++|.|.+++.+|+|.|+|.|.|..|...++++.|.|.
T Consensus        59 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          59 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             ceEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEEEE
Confidence            35699999999999999999999988755677888775

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.53  E-value=5.7e-08  Score=57.09  Aligned_cols=38  Identities=21%  Similarity=0.313  Sum_probs=33.3

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      ++..|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|.
T Consensus        53 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~   90 (91)
T d1cs6a3          53 SEPLLHIQNVDFEDEGTYECEAENIKGR-DTYQGRIIIH   90 (91)
T ss_dssp             SSSEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             eeeEEEeCCCCccCCEEEEEEEEECCCE-EEEEEEEEEE
Confidence            4567999999999999999999999987 6778888774

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=4e-08  Score=58.70  Aligned_cols=78  Identities=18%  Similarity=0.063  Sum_probs=54.7

Q ss_pred             CCCeeEEEEEeCC-CCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCC
Q psy12131        154 GPDGYRLVWQVDT-YSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRP  232 (245)
Q Consensus       154 ~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~  232 (245)
                      ......|.|.++. ++....|.++|+... ...|..+..-...    ......+.+.+|..+..|.|||+|.|..|.|.+
T Consensus        15 ~n~~~~L~W~pp~~~g~~~~Y~Ve~~~~~-~~~W~~v~~c~~~----t~~~~~~~~~~l~~~~~Y~fRVrA~n~~g~S~W   89 (99)
T d1y6kr1          15 EFFHHILHWTPIPQQSESTCYEVALLRYG-IESWNSISQCSQT----LSYDLTAVTLDLYHSNGYRARVRAVDGSRHSQW   89 (99)
T ss_dssp             ETTEEEEEECCCTTCCTTCEEEEEEEETT-SCCCEEEEEEESS----SEEECGGGGTTGGGSSCEEEEEEEEETTEECCC
T ss_pred             ECCEEEEEEcCCCCcCCCCEEEEEEEECC-CcceEEEEeeccc----cccceeeeeeecCCCCEEEEEEEEEcCCCcCCC
Confidence            3456889999733 345568999998875 6779876422111    001133456788899999999999999999988


Q ss_pred             Ccce
Q psy12131        233 SKAY  236 (245)
Q Consensus       233 s~~~  236 (245)
                      +..-
T Consensus        90 s~t~   93 (99)
T d1y6kr1          90 TVTN   93 (99)
T ss_dssp             EECS
T ss_pred             cccC
Confidence            7643

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.51  E-value=5.4e-08  Score=61.00  Aligned_cols=42  Identities=17%  Similarity=0.208  Sum_probs=35.7

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCeE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV   52 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~   52 (245)
                      ..+|.|.+++.+|+|.|+|.+.+..+. .++.+.|.|.+|+..
T Consensus        80 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~v~L~V~~P~~~  121 (126)
T d1pkoa_          80 KVALRIQNVRFSDEGGYTCFFRDHSYQ-EEAAVELKVEDPFYW  121 (126)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECTTTT
T ss_pred             eEEEEEEEEchhHCeEEEEEEEECCCE-EEEEEEEEEeCCCEE
Confidence            467999999999999999999987665 678899999876543

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.51  E-value=1.2e-07  Score=55.34  Aligned_cols=43  Identities=28%  Similarity=0.492  Sum_probs=35.5

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      +++.+.  ...|.|.+++.+|+|.|+|.|.|..|. ....+.|.|.
T Consensus        46 ~~~~~~--~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~   88 (89)
T d1cs6a4          46 NRIEVS--GGELRFSKLVLEDSGMYQCVAENKHGT-VYASAELTVQ   88 (89)
T ss_dssp             SSEEEE--TTEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             ceeeee--eeeEEEEeecccCCEEEEEEEEeCCCE-EEEEEEEEEE
Confidence            355553  456999999999999999999999987 6777888875

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.50  E-value=8.8e-08  Score=56.98  Aligned_cols=38  Identities=18%  Similarity=0.416  Sum_probs=32.8

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      ..+|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus        60 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~Vl   97 (97)
T d1biha3          60 GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV   97 (97)
T ss_dssp             TSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEE
T ss_pred             CCEEEEEeccccccEEEEEEEEECCCcEEEEEEEEEEC
Confidence            45799999999999999999999998855667888773

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.50  E-value=1.2e-06  Score=52.83  Aligned_cols=76  Identities=18%  Similarity=0.473  Sum_probs=53.6

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--CE---Eec---------cCCcEEEEecCceeEEEEccCCCCCC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GT---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDF  117 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~  117 (245)
                      +...|..+.+.+|+.++|.|.........+.||+-  +.   .+.         ....+.....+....|.|.++.++|.
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   83 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDF   83 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCC
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccc
Confidence            34556677889999999999987655567999871  11   110         11234444455667899999999999


Q ss_pred             eEEEEEEEeC
Q psy12131        118 GNYMCQASNN  127 (245)
Q Consensus       118 g~y~C~~~n~  127 (245)
                      |.|.|...+.
T Consensus        84 a~YyCA~~~~   93 (108)
T d1jhll_          84 AMYICQQHNE   93 (108)
T ss_dssp             SEEEEEECSS
T ss_pred             eEEEEeeCCC
Confidence            9999976543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.50  E-value=6.9e-07  Score=53.74  Aligned_cols=74  Identities=15%  Similarity=0.317  Sum_probs=52.6

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEE--CCEE---e---------ccCCcEEEEecCceeEEEEccCCCCCCe
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGTA---I---------TLGGRIDMHVSSEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g  118 (245)
                      ...|..+.+.+|++++|.|.........+.|++  .+..   +         ....++.....+....|.|.+++.+|.|
T Consensus         5 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   84 (107)
T d1c5cl1           5 TQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFA   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCe
Confidence            345667778899999999998766566799997  2211   1         1112344444445679999999999999


Q ss_pred             EEEEEEEe
Q psy12131        119 NYMCQASN  126 (245)
Q Consensus       119 ~y~C~~~n  126 (245)
                      .|.|.+.+
T Consensus        85 ~YyCa~~~   92 (107)
T d1c5cl1          85 DYYCLQYA   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             EEEEecCc
Confidence            99997664

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=2.5e-08  Score=60.48  Aligned_cols=44  Identities=20%  Similarity=0.163  Sum_probs=35.9

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +|+.+..++ +|.|.+++.+|+|.|+|.+.+..+....+.+.|+|
T Consensus        63 gR~~l~~ng-SL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          63 GREIIYSNG-SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             SSEEECTTS-CEEECSCCGGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             eEEEEcccc-cEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            688888765 59999999999999999999876554566677765

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.49  E-value=4.7e-08  Score=57.47  Aligned_cols=42  Identities=14%  Similarity=0.317  Sum_probs=34.8

Q ss_pred             EEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         5 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      ........|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|+
T Consensus        49 ~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~   90 (91)
T d1tnna_          49 TTTKYKSTFEISSVQASDEGNYSVVVENSEGK-QEAEFTLTIQ   90 (91)
T ss_dssp             EECSSEEEEECSSCCSCCCEEEEEECBCSSCB-CCEEEEEECC
T ss_pred             eeecceeEEeecCCCHHHCEEEEEEEEECCCE-EEEEEEEEEE
Confidence            33345567999999999999999999999988 5777888764

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=2e-07  Score=56.35  Aligned_cols=75  Identities=19%  Similarity=0.274  Sum_probs=50.3

Q ss_pred             ecCCCeEEEEEEEeecCCCeEEEEECCEEecc-------------------CCcEEEEecCceeEEEEccCCCCCCeEEE
Q psy12131         61 TAPDMRAEIICNVYANPPAKVEWFRDGTAITL-------------------GGRIDMHVSSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~-------------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      +.+|+++.|.|.........+.|++.......                   .++..+.   .+.+|.|.+++.+|.|.|+
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~---~ngSL~I~~v~~~D~G~Y~   87 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIY---SNGSLLFQMITMKDMGVYT   87 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEEC---TTSCEEECSCCGGGCEEEE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEc---ccccEEEcCCCchhCEEEE
Confidence            56999999999854444568999984432110                   1233332   2458999999999999999


Q ss_pred             EEEEeCCc-eeEEEEEEE
Q psy12131        122 CQASNNLG-SSQQFIQLS  138 (245)
Q Consensus       122 C~~~n~~g-~~~~~~~~~  138 (245)
                      |.+.+..+ .....+.|.
T Consensus        88 c~v~~~~~~~~~~~v~L~  105 (107)
T d1l6za1          88 LDMTDENYRRTQATVRFH  105 (107)
T ss_dssp             EEEEETTEEECCCCEEEC
T ss_pred             EEEEECCCCEEEEEEEEE
Confidence            99987754 333444443

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.49  E-value=6.1e-07  Score=54.07  Aligned_cols=73  Identities=16%  Similarity=0.342  Sum_probs=53.6

Q ss_pred             eecceEEecCCCeEEEEEEEeecCCCeEEEEE--CCE---Ee---------ccCCcEEEEecCceeEEEEccCCCCCCeE
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGT---AI---------TLGGRIDMHVSSEKHSLLVRHIKDTDFGN  119 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  119 (245)
                      ..|..+.+.+|+.++|.|...+.....+.||+  .+.   .+         ....++.....+....|.|.++..+|.|.
T Consensus         6 QsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1ospl1           6 QSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVAT   85 (107)
T ss_dssp             CCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSE
T ss_pred             eeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCc
Confidence            44667778899999999998765555799997  111   11         11235665556667899999999999999


Q ss_pred             EEEEEEe
Q psy12131        120 YMCQASN  126 (245)
Q Consensus       120 y~C~~~n  126 (245)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d1ospl1          86 YFCQQYW   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEeecc
Confidence            9997654

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.48  E-value=6.1e-08  Score=57.22  Aligned_cols=38  Identities=24%  Similarity=0.243  Sum_probs=33.0

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      +...|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|+
T Consensus        56 ~~~~L~I~~~~~~D~G~Y~c~a~N~~G~-~~~~~~l~V~   93 (93)
T d1wiua_          56 STTSIFFPSAKRADSGNYKLKVKNELGE-DEAIFEVIVQ   93 (93)
T ss_dssp             TEEEEECTTBCGGGCEEEEEEEEETTEE-EEEEEEEEEC
T ss_pred             cceeeccccccccccEEEEEEEEECCCE-EEEEEEEEEC
Confidence            3456999999999999999999999998 6888888773

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.48  E-value=7.7e-07  Score=53.71  Aligned_cols=73  Identities=16%  Similarity=0.325  Sum_probs=53.6

Q ss_pred             eecceEEecCCCeEEEEEEEeecCCCeEEEEEC--C---EEe---------ccCCcEEEEecCceeEEEEccCCCCCCeE
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--G---TAI---------TLGGRIDMHVSSEKHSLLVRHIKDTDFGN  119 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~---~~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  119 (245)
                      ..|..+.+.+|++++|.|.........+.|++-  +   ..+         ....++..........|.|.++..+|.|.
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~   85 (107)
T d1kcvl1           6 QSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDAD   85 (107)
T ss_dssp             ESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCce
Confidence            456677788999999999987666667999972  1   111         11234555555567899999999999999


Q ss_pred             EEEEEEe
Q psy12131        120 YMCQASN  126 (245)
Q Consensus       120 y~C~~~n  126 (245)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (107)
T d1kcvl1          86 YYCGQSY   92 (107)
T ss_dssp             EEEEECS
T ss_pred             EEEEecC
Confidence            9998654

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.48  E-value=9.5e-07  Score=53.22  Aligned_cols=75  Identities=19%  Similarity=0.436  Sum_probs=54.2

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--CE---Ee---------ccCCcEEEEecCceeEEEEccCCCCCC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GT---AI---------TLGGRIDMHVSSEKHSLLVRHIKDTDF  117 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~  117 (245)
                      +...|..+.+.+|+.++|.|.........+.|++-  +.   .+         ....++.....+....|.|.++.++|.
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   83 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcC
Confidence            44566778889999999999987555668899871  11   11         112345544455677999999999999


Q ss_pred             eEEEEEEEe
Q psy12131        118 GNYMCQASN  126 (245)
Q Consensus       118 g~y~C~~~n  126 (245)
                      +.|.|....
T Consensus        84 A~YyCa~~~   92 (107)
T d1tjgl1          84 ATYYCQQLH   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             ceEEEEECc
Confidence            999997554

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2.3e-07  Score=55.22  Aligned_cols=76  Identities=11%  Similarity=0.016  Sum_probs=48.3

Q ss_pred             CeeEEEEEeCCCCCceEEEEEEEeec-CCCCe-EEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCCCCC
Q psy12131        156 DGYRLVWQVDTYSGIIQYLLKFRERE-ELTPW-RNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWSRPS  233 (245)
Q Consensus       156 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s  233 (245)
                      ....|.|.++.......|..+++... ....| ..+......       ...+.+.+|.++..|.|||+|.|..|.|.++
T Consensus        14 ~~~~L~W~pP~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~Y~fRV~A~n~~g~S~ws   86 (98)
T d1fyhb1          14 MNPIVYWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHH-------YCNISDHVGDPSNSLWVRVKARVGQKESAYA   86 (98)
T ss_dssp             SCCEEEEECCCCSSCCEEEEEEEETTCSSSCCEEEEEEESSS-------EEECGGGCCSTTSCEEEEEEEEETTEECCCE
T ss_pred             CcEEEEECCCCCCCCCceeEEEEEeccccceeEEeeeecccc-------eeeeEecccCCCCEEEEEEEEEcCCcccCCc
Confidence            45579999843322233444444433 12223 333222221       2567788999999999999999999999998


Q ss_pred             cceEE
Q psy12131        234 KAYVF  238 (245)
Q Consensus       234 ~~~~~  238 (245)
                      +.-.|
T Consensus        87 ~s~~f   91 (98)
T d1fyhb1          87 KSEEF   91 (98)
T ss_dssp             ECCCB
T ss_pred             cCCCc
Confidence            76544

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=5.4e-07  Score=53.06  Aligned_cols=78  Identities=12%  Similarity=0.173  Sum_probs=54.1

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +|.+...+... +..|.+|+|.|... .+...+.|++++......... ....+....|.|.++...|.|.|+|...+..
T Consensus         4 KPsLsa~P~~~-V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~-~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~   80 (95)
T d1olla1           4 KPFIWAEPHFM-VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIYRVGE   80 (95)
T ss_dssp             CCEEEEESCSE-EETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCS-SCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEeeCCCc-ccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEc-cCCCccEEEEEEeeeecCCCceEEEEeCCCC
Confidence            56676666554 67999999999864 445678899988643321100 0012234579999999999999999987754


Q ss_pred             c
Q psy12131        129 G  129 (245)
Q Consensus       129 g  129 (245)
                      .
T Consensus        81 ~   81 (95)
T d1olla1          81 L   81 (95)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.3e-07  Score=54.55  Aligned_cols=79  Identities=15%  Similarity=0.147  Sum_probs=52.6

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccC-CcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLG-GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      +|.+...+.. .+..|++|+|.|... .+...+.|++++...... .............+.|.++...|.|.|+|...+.
T Consensus         7 kPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~   84 (99)
T d1ucta1           7 MPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIG   84 (99)
T ss_dssp             CCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECC
Confidence            5667666654 467899999999865 455688888865321111 1111111223457999999999999999999886


Q ss_pred             Cc
Q psy12131        128 LG  129 (245)
Q Consensus       128 ~g  129 (245)
                      ..
T Consensus        85 ~~   86 (99)
T d1ucta1          85 HY   86 (99)
T ss_dssp             TT
T ss_pred             Cc
Confidence            54

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.46  E-value=9e-07  Score=53.76  Aligned_cols=75  Identities=21%  Similarity=0.344  Sum_probs=50.2

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--CEE---ec---------cCCcEE--EEecCceeEEEEccCCCCC
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GTA---IT---------LGGRID--MHVSSEKHSLLVRHIKDTD  116 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~~---~~---------~~~~~~--~~~~~~~~~l~i~~~~~~d  116 (245)
                      ...|..+.+.+|+.++|.|.........+.||+-  +..   +.         ...++.  .........|.|.++..+|
T Consensus         3 ~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (110)
T d1u3ha1           3 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGD   82 (110)
T ss_dssp             ECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTS
T ss_pred             EecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCC
Confidence            3445567788999999999987655557899972  111   10         011122  1223445689999999999


Q ss_pred             CeEEEEEEEeC
Q psy12131        117 FGNYMCQASNN  127 (245)
Q Consensus       117 ~g~y~C~~~n~  127 (245)
                      .|.|.|.+...
T Consensus        83 sa~YyCa~~~~   93 (110)
T d1u3ha1          83 SATYFCAASAN   93 (110)
T ss_dssp             CSEEEECCEES
T ss_pred             ceeEeeeecCC
Confidence            99999987643

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=6e-08  Score=58.82  Aligned_cols=40  Identities=25%  Similarity=0.352  Sum_probs=36.2

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecCCe
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE   51 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~   51 (245)
                      +.|.|.+++..|+|.|+|.|.|..|. ..+.+.|.|.++|.
T Consensus        63 ~~L~i~~~~~~D~G~Y~C~A~N~~G~-~~~~i~v~v~~~P~  102 (107)
T d1he7a_          63 GCLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNPF  102 (107)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEETTEE-EEEEEEECCCSCTT
T ss_pred             eEEEECcccHHHCcEEEEEEEeCCCE-EEEEEEEEEEcCCC
Confidence            45999999999999999999999998 78889999988884

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.45  E-value=9.1e-07  Score=53.29  Aligned_cols=74  Identities=22%  Similarity=0.504  Sum_probs=53.3

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEE--CCE---Eec---------cCCcEEEEecCceeEEEEccCCCCCCe
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGT---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g  118 (245)
                      ...|..+.+.+|+.++|.|.........+.|++  .+.   .+.         ...++.....+....|.|.++.++|.+
T Consensus         5 tQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA   84 (107)
T d1mexl1           5 TQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLA   84 (107)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             EcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecce
Confidence            345666778999999999997655556799997  111   111         123555555556788999999999999


Q ss_pred             EEEEEEEe
Q psy12131        119 NYMCQASN  126 (245)
Q Consensus       119 ~y~C~~~n  126 (245)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d1mexl1          85 EYFCQQYN   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             eEEEeECC
Confidence            99997654

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.45  E-value=1.4e-06  Score=52.39  Aligned_cols=73  Identities=16%  Similarity=0.327  Sum_probs=53.8

Q ss_pred             eecceEEecCCCeEEEEEEEeecCCCeEEEEEC--C---EEe---------ccCCcEEEEecCceeEEEEccCCCCCCeE
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--G---TAI---------TLGGRIDMHVSSEKHSLLVRHIKDTDFGN  119 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~---~~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~  119 (245)
                      ..|..+.+.+|+.++|.|.........+.||+-  +   ..+         ....++.....+....|.|.+++++|.+.
T Consensus         5 Q~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   84 (106)
T d1op3k1           5 QSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFAT   84 (106)
T ss_dssp             EECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSE
T ss_pred             CcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCc
Confidence            456678889999999999987655567899872  1   111         11235555555667789999999999999


Q ss_pred             EEEEEEe
Q psy12131        120 YMCQASN  126 (245)
Q Consensus       120 y~C~~~n  126 (245)
                      |.|.+..
T Consensus        85 YyCa~~~   91 (106)
T d1op3k1          85 YHCQHYA   91 (106)
T ss_dssp             EEEEEEC
T ss_pred             EeeeeCC
Confidence            9998664

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.45  E-value=7.3e-08  Score=56.99  Aligned_cols=42  Identities=26%  Similarity=0.307  Sum_probs=33.0

Q ss_pred             eEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12131          4 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN   45 (245)
Q Consensus         4 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~   45 (245)
                      +.+..+..+|.|.+++.+|+|.|+|.|.|..|...+..+.|.
T Consensus        51 ~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s~~v~l~   92 (94)
T d1biha1          51 AALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFR   92 (94)
T ss_dssp             EEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             eeecccceEEEEeccChhcCeEEEEEEEeCCCEEEEEEEEEE
Confidence            344455667999999999999999999999987555555554

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.44  E-value=1.4e-06  Score=52.40  Aligned_cols=74  Identities=19%  Similarity=0.381  Sum_probs=53.9

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--CE---Eec---------cCCcEEEEecCceeEEEEccCCCCCCe
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GT---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g  118 (245)
                      ...|..+.+.+|++++|.|.........+.|++-  +.   .+.         ...++.....+....|.|.+++.+|.+
T Consensus         5 tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d1d5il1           5 TQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMG   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCE
Confidence            4456677788999999999986555567889872  11   111         123565555666789999999999999


Q ss_pred             EEEEEEEe
Q psy12131        119 NYMCQASN  126 (245)
Q Consensus       119 ~y~C~~~n  126 (245)
                      .|.|....
T Consensus        85 ~YyCa~~~   92 (107)
T d1d5il1          85 IYYCLQYD   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             EEEeeecc
Confidence            99997654

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.43  E-value=4.9e-06  Score=50.45  Aligned_cols=74  Identities=15%  Similarity=0.259  Sum_probs=51.2

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEE--CCE-E--ec---------cCCcEEE--EecCceeEEEEccCCCCC
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGT-A--IT---------LGGRIDM--HVSSEKHSLLVRHIKDTD  116 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~-~--~~---------~~~~~~~--~~~~~~~~l~i~~~~~~d  116 (245)
                      ...|..+.+.+|+.++|.|.........+.|++  .+. +  +.         ...++..  ........|.|.++..+|
T Consensus         4 ~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (111)
T d1bd2d1           4 KQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGD   83 (111)
T ss_dssp             ECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             EccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccc
Confidence            344556778899999999998766666788987  121 1  10         1122322  223457799999999999


Q ss_pred             CeEEEEEEEe
Q psy12131        117 FGNYMCQASN  126 (245)
Q Consensus       117 ~g~y~C~~~n  126 (245)
                      .|.|.|.+..
T Consensus        84 sa~YyCa~~~   93 (111)
T d1bd2d1          84 SAVYFCAAME   93 (111)
T ss_dssp             CEEEEEEEES
T ss_pred             cEEEEeeccC
Confidence            9999998764

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=9.7e-08  Score=57.27  Aligned_cols=85  Identities=7%  Similarity=0.009  Sum_probs=49.6

Q ss_pred             cccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCC--CCcceeeeEEEecCCC-CCceEEEEEEEEecC
Q psy12131        151 RRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGS--LAGPIYTQSYNITGLQ-LFTQYEASVLAKNRF  227 (245)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~l~-~~~~y~~~v~a~N~~  227 (245)
                      .+..|+.+.|.|.+.+.++...+. |++... .... .........  .........+.|.++. ..+.+.|.|.|.|.+
T Consensus        13 ~v~~G~~v~l~C~v~g~P~p~~i~-W~k~~~-~~~~-~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~   89 (101)
T d3b5ha1          13 HINEGETAMLVCKSESVPPVTDWA-WYKITD-SEDK-ALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSK   89 (101)
T ss_dssp             EECTTSCEEEEEECCCSSCCCEEE-EEECCS-SSCE-ECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETT
T ss_pred             EECcCCeEEEEEEEEecCCeeEEE-EEeccc-eeee-ecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEECC
Confidence            356799999999998776554443 555432 1100 000000000  0011123678888886 467788888899999


Q ss_pred             CCCCCCcceEE
Q psy12131        228 GWSRPSKAYVF  238 (245)
Q Consensus       228 G~~~~s~~~~~  238 (245)
                      |....+..+.|
T Consensus        90 G~~~~~~~L~V  100 (101)
T d3b5ha1          90 GSDQAIITLRV  100 (101)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
Confidence            98766655554

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.42  E-value=1.6e-06  Score=52.46  Aligned_cols=74  Identities=15%  Similarity=0.346  Sum_probs=53.6

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--C---EEe---------ccCCcEEEEecCceeEEEEccCCCCCCe
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--G---TAI---------TLGGRIDMHVSSEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~---~~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g  118 (245)
                      ...|..+.+.+|+.++|.|...+.....+.||+-  +   ..+         ....++.....+....|.|.+++.+|.+
T Consensus         7 tQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa   86 (109)
T d1bwwa_           7 TQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIA   86 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCc
Confidence            3456677889999999999987655567889871  1   111         1123455555556778999999999999


Q ss_pred             EEEEEEEe
Q psy12131        119 NYMCQASN  126 (245)
Q Consensus       119 ~y~C~~~n  126 (245)
                      .|.|.+..
T Consensus        87 ~YyCA~~~   94 (109)
T d1bwwa_          87 TYYCQQYQ   94 (109)
T ss_dssp             EEEEEECS
T ss_pred             eEEEeecC
Confidence            99998654

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=3.7e-06  Score=51.21  Aligned_cols=76  Identities=14%  Similarity=0.323  Sum_probs=52.9

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecC-CCeEEEEE--CC-EE--e----------ccCCcEEEEec--CceeEEEEccCC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFR--DG-TA--I----------TLGGRIDMHVS--SEKHSLLVRHIK  113 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~w~~--~~-~~--~----------~~~~~~~~~~~--~~~~~l~i~~~~  113 (245)
                      +...|..+.+.+|+.++|.|...+.. ...+.|++  .+ .+  +          ....++.+...  .....|.|.+++
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            34567778889999999999986543 34688987  12 11  1          12234555443  234679999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy12131        114 DTDFGNYMCQASNN  127 (245)
Q Consensus       114 ~~d~g~y~C~~~n~  127 (245)
                      ++|.|.|.|.+...
T Consensus        82 ~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          82 RNDSGIYLCGAISL   95 (114)
T ss_dssp             GGGCEEEEEEEECS
T ss_pred             cCCCeEEEEEEEeC
Confidence            99999999988754

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.42  E-value=1.8e-07  Score=55.68  Aligned_cols=38  Identities=26%  Similarity=0.061  Sum_probs=33.1

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   48 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~   48 (245)
                      ...|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..
T Consensus        60 ~~~L~I~~~~~~D~G~Y~c~a~N~~G~-~~~~~~L~V~~   97 (98)
T d1g1ca_          60 VCELVIRDVTGEDSASIMVKAINIAGE-TSSHAFLLVQA   97 (98)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred             EEEEEeccCccccCEEEEEEEEECCcE-EEEEEEEEEEE
Confidence            346999999999999999999999988 67788888753

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.41  E-value=1.4e-06  Score=52.38  Aligned_cols=69  Identities=19%  Similarity=0.448  Sum_probs=50.8

Q ss_pred             ceEEecCCCeEEEEEEEeecCCCeEEEEEC--C---EEec---------cCCcEEEEecCceeEEEEccCCCCCCeEEEE
Q psy12131         57 QWIHTAPDMRAEIICNVYANPPAKVEWFRD--G---TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC  122 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~---~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  122 (245)
                      +.+.+.+|+.++|.|...+.....+.|++-  +   ..+.         ...++.....+....|.|.+++++|.|.|.|
T Consensus         8 ~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyC   87 (106)
T d1lk3l1           8 PALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFC   87 (106)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCccc
Confidence            356788999999999987655567999871  1   1111         1235555555667899999999999999999


Q ss_pred             EEE
Q psy12131        123 QAS  125 (245)
Q Consensus       123 ~~~  125 (245)
                      ...
T Consensus        88 a~~   90 (106)
T d1lk3l1          88 QQS   90 (106)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            654

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.5e-07  Score=55.17  Aligned_cols=37  Identities=24%  Similarity=0.228  Sum_probs=32.2

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      ..|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus        54 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          54 GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE   90 (91)
T ss_dssp             EEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEE
T ss_pred             eeEEECCCCcccCEEEEEEEEECCCCEEEEEEEEEEE
Confidence            4699999999999999999999998756777888774

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.39  E-value=5.4e-06  Score=50.37  Aligned_cols=75  Identities=27%  Similarity=0.428  Sum_probs=53.4

Q ss_pred             EEeecceEEecCCCeEEEEEEEeec--CCCeEEEEE--CCE----EeccCCcEEEEe--cCceeEEEEccCCCCCCeEEE
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYAN--PPAKVEWFR--DGT----AITLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~~~w~~--~~~----~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      +...|..+.+.+|+.++|.|...+.  ....+.|++  .+.    .+....++....  ......|+|.+++.+|.|.|.
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   82 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYK   82 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEe
Confidence            4556777888999999999998753  334689996  221    233334444332  233468999999999999999


Q ss_pred             EEEEe
Q psy12131        122 CQASN  126 (245)
Q Consensus       122 C~~~n  126 (245)
                      |.+..
T Consensus        83 Ca~~~   87 (113)
T d1vesa_          83 CQAFY   87 (113)
T ss_dssp             EEEEE
T ss_pred             eeeec
Confidence            99864

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.38  E-value=3.5e-06  Score=51.38  Aligned_cols=76  Identities=13%  Similarity=0.263  Sum_probs=50.3

Q ss_pred             EeecceEEecCCCeEEEEEEEeecC-CCeEEEEE--CCE-E--ec----------cCCcE--EEEecCceeEEEEccCCC
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFR--DGT-A--IT----------LGGRI--DMHVSSEKHSLLVRHIKD  114 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~w~~--~~~-~--~~----------~~~~~--~~~~~~~~~~l~i~~~~~  114 (245)
                      ...+..+.+.+|++++|.|...... ...+.|++  .+. +  +.          ...+.  ..........|.|.++..
T Consensus         4 tQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (114)
T d2ak4d1           4 TQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQV   83 (114)
T ss_dssp             ECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             EecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccc
Confidence            4455667788999999999876433 34688987  111 1  10          00112  222334467899999999


Q ss_pred             CCCeEEEEEEEeCC
Q psy12131        115 TDFGNYMCQASNNL  128 (245)
Q Consensus       115 ~d~g~y~C~~~n~~  128 (245)
                      +|.|.|.|.+....
T Consensus        84 ~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          84 VDSAVYFCALSGFY   97 (114)
T ss_dssp             GGCEEEEEEEECSB
T ss_pred             ccCCCceEeCCCCC
Confidence            99999999876543

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.38  E-value=2.4e-06  Score=51.59  Aligned_cols=74  Identities=20%  Similarity=0.387  Sum_probs=53.3

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--CE---Eec---------cCCcEEEEecCceeEEEEccCCCCCCe
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GT---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g  118 (245)
                      ...|..+.+.+|+.++|.|.........+.||+-  +.   .+.         ...++.....+....|.|.++.++|.|
T Consensus         5 tQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa   84 (109)
T d1mqkl_           5 TQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFG   84 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCe
Confidence            3456677788999999999986555567999971  11   110         113455444566789999999999999


Q ss_pred             EEEEEEEe
Q psy12131        119 NYMCQASN  126 (245)
Q Consensus       119 ~y~C~~~n  126 (245)
                      .|.|.+..
T Consensus        85 ~YyCA~~~   92 (109)
T d1mqkl_          85 SYYCQHHY   92 (109)
T ss_dssp             EEEEEECS
T ss_pred             eEEEeeeC
Confidence            99998663

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.37  E-value=1.3e-06  Score=53.43  Aligned_cols=75  Identities=15%  Similarity=0.242  Sum_probs=51.0

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEE--CCE---Ee---c-------cCCcEEEEe--cCceeEEEEccCCCC
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGT---AI---T-------LGGRIDMHV--SSEKHSLLVRHIKDT  115 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~---~~---~-------~~~~~~~~~--~~~~~~l~i~~~~~~  115 (245)
                      ...+..+.+.+|+.++|.|.........+.||+  .+.   .+   .       ...++....  ......|.|.++..+
T Consensus         4 tQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1j8hd1           4 TQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMS   83 (115)
T ss_dssp             ECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGG
T ss_pred             EcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccccc
Confidence            345567788899999999998766666899997  111   11   0       011222221  222447999999999


Q ss_pred             CCeEEEEEEEeC
Q psy12131        116 DFGNYMCQASNN  127 (245)
Q Consensus       116 d~g~y~C~~~n~  127 (245)
                      |.|.|.|.+...
T Consensus        84 Dsa~YyCa~~~~   95 (115)
T d1j8hd1          84 DAAEYFCAVSES   95 (115)
T ss_dssp             GCEEEEEEEESS
T ss_pred             CCccceeeecCC
Confidence            999999998764

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.36  E-value=2.2e-07  Score=55.22  Aligned_cols=83  Identities=11%  Similarity=-0.066  Sum_probs=54.9

Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      ...|+.+.|.|.+.+.++..  ..|+++..  .......+..        ......+.|.++...+.+.|+|.|.|.+|.
T Consensus        13 v~~G~~~~l~C~~~g~P~p~--v~W~~~~~~l~~~~~~~~~~--------~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   82 (97)
T d1koaa1          13 VGEGQSANFYCRVIASSPPV--VTWHKDDRELKQSVKYMKRY--------NGNDYGLTINRVKGDDKGEYTVRAKNSYGT   82 (97)
T ss_dssp             EETTSCEEEEEEEECSSCCE--EEEEETTEECCSBTTBBCCC--------STTEEEEEESCCCSGGGSCEEEEEEETTEE
T ss_pred             EeCCCcEEEEEEEEEcCCCE--EEEEEeeeccceeeEEEEEe--------cCCeeEEEeCCCceecCEEEEEEEEECCCE
Confidence            46788999999997765432  23455433  1111111111        112367899999998888888889999999


Q ss_pred             CCCCcceEEecCCCC
Q psy12131        230 SRPSKAYVFATEGAE  244 (245)
Q Consensus       230 ~~~s~~~~~~t~~~~  244 (245)
                      ...+..+.|...++|
T Consensus        83 ~~~~~~l~V~~~~~P   97 (97)
T d1koaa1          83 KEEIVFLNVTRHSEP   97 (97)
T ss_dssp             EEEEECCEEECSCCC
T ss_pred             EEEEEEEEEeecCCC
Confidence            888888888765544

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.36  E-value=3e-07  Score=55.87  Aligned_cols=36  Identities=36%  Similarity=0.508  Sum_probs=32.1

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      .+.|.|.+++.+|+|.|+|.|.|..|. ..+.+.|.|
T Consensus        73 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~L~V  108 (109)
T d2fdbp2          73 IEVLYIRNVTFEDAGEYTCLAGNSIGI-SFHSAWLTV  108 (109)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEE
T ss_pred             cEEEEECCCCHHHCeEEEEEEEECCCE-EEEEEEEEE
Confidence            356999999999999999999999998 677888877

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.35  E-value=1.8e-06  Score=52.37  Aligned_cols=71  Identities=18%  Similarity=0.273  Sum_probs=48.0

Q ss_pred             ceEEecCCCeEEEEEEEeec-CCCeEEEEE--CCE---Ee---------ccCCcEEEEecCceeEEEEccCCCCCCeEEE
Q psy12131         57 QWIHTAPDMRAEIICNVYAN-PPAKVEWFR--DGT---AI---------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~-~~~~~~w~~--~~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      ..+.+.+|++++|.|..... ....+.||+  .+.   .+         ....++..........|.|.+++.+|.|.|.
T Consensus         6 ~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   85 (110)
T d2esvd1           6 PSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYY   85 (110)
T ss_dssp             SEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEE
T ss_pred             CEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEE
Confidence            35678899999999997543 334688997  221   11         0111223333445678999999999999999


Q ss_pred             EEEEeC
Q psy12131        122 CQASNN  127 (245)
Q Consensus       122 C~~~n~  127 (245)
                      |.+...
T Consensus        86 Ca~~~~   91 (110)
T d2esvd1          86 CIVVRS   91 (110)
T ss_dssp             EEEEES
T ss_pred             EEEeCC
Confidence            987643

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.35  E-value=1e-06  Score=53.93  Aligned_cols=75  Identities=12%  Similarity=0.197  Sum_probs=50.8

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEE--CCE---Eec----c--------CCcEEEEecCceeEEEEccCCCC
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGT---AIT----L--------GGRIDMHVSSEKHSLLVRHIKDT  115 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~---~~~----~--------~~~~~~~~~~~~~~l~i~~~~~~  115 (245)
                      ..++..+.+.+|++++|.|.........+.|++  .+.   .+.    .        ...+..........|.|.++..+
T Consensus         4 ~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1i9ea_           4 TQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWS   83 (115)
T ss_dssp             ECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGG
T ss_pred             EcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccc
Confidence            345556788999999999998766667788987  121   110    0        01111122334568999999999


Q ss_pred             CCeEEEEEEEeC
Q psy12131        116 DFGNYMCQASNN  127 (245)
Q Consensus       116 d~g~y~C~~~n~  127 (245)
                      |.|.|.|.+...
T Consensus        84 Dsg~YyCa~~~~   95 (115)
T d1i9ea_          84 DSAVYFCAVSGF   95 (115)
T ss_dssp             GCEEEEEEEEET
T ss_pred             ccceecccccCC
Confidence            999999987643

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=6.5e-07  Score=53.92  Aligned_cols=98  Identities=11%  Similarity=-0.001  Sum_probs=59.7

Q ss_pred             CCCccccCccccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEE
Q psy12131        142 NIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEA  219 (245)
Q Consensus       142 ~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~  219 (245)
                      .||.+.............|.|.+.+.++..  ..|+++..  .............    .......+.|.++...+.+.|
T Consensus         4 ~PP~i~~~~~~~~~~~~~i~~~v~G~P~P~--v~W~~n~~~i~~~~~~~~~~~~~----~~~~~~~L~i~~~~~~D~G~Y   77 (105)
T d1wwca_           4 YPPRVVSLEEPELRLEHCIEFVVRGNPPPT--LHWLHNGQPLRESKIIHVEYYQE----GEISEGCLLFNKPTHYNNGNY   77 (105)
T ss_dssp             CCCCCCCCCCCCCCCEEEEEEEEECSSCCE--EEEEETTEECCCSSSEEEEEEEC----SSEEEEEEEEESCCGGGCEEE
T ss_pred             cCCeeEEeCCCEEEEEEEEEEEEEEeCCCe--EEEEeCccccCCCcceeeeEEee----cccceEEEEEeecccccceEE
Confidence            355554443334445667888887765442  23444433  1222221111111    112235688999999999999


Q ss_pred             EEEEEecCCCCCCCcceEEecCCCCC
Q psy12131        220 SVLAKNRFGWSRPSKAYVFATEGAET  245 (245)
Q Consensus       220 ~v~a~N~~G~~~~s~~~~~~t~~~~~  245 (245)
                      +|.|.|.+|....+..+.+...|+|.
T Consensus        78 ~C~a~N~~G~~~~~~~v~V~~~P~P~  103 (105)
T d1wwca_          78 TLIAKNPLGTANQTINGHFLKEPFPV  103 (105)
T ss_dssp             EEEEEETTEEEEEEEEECCSCCCCCS
T ss_pred             EEEEEcCCCEEEEEEEEEEEeCCCCC
Confidence            99999999998888888887777663

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=98.34  E-value=6.9e-07  Score=53.49  Aligned_cols=80  Identities=15%  Similarity=0.156  Sum_probs=55.2

Q ss_pred             ccCCCeeEEEEEeCCCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      ...++.+.|.|...+.+++ . ..|+++..  .......+......       ...+.|.++...+.+.|+|.|.|..|.
T Consensus        20 v~~G~~~~l~C~~~g~P~p-~-v~W~k~~~~i~~~~~~~~~~~~~~-------~~~L~I~~~~~~D~G~Y~C~a~N~~G~   90 (102)
T d1fhga_          20 VVEGSAARFDCKVEGYPDP-E-VMWFKDDNPVKESRHFQIDYDEEG-------NCSLTISEVCGDDDAKYTCKAVNSLGE   90 (102)
T ss_dssp             EETTSCEEEEEEEEEESCC-E-EEEEETTEECCCSSSEEEEECTTC-------EEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             EecCCcEEEEEEEEeccCC-e-EEEEeeeccccceeeEeEEEecCc-------eeeeEecCCCHHhCEEEEEEEEECCcE
Confidence            4678999999999765433 2 23555443  22222333333222       267899999999999999999999998


Q ss_pred             CCCCcceEEec
Q psy12131        230 SRPSKAYVFAT  240 (245)
Q Consensus       230 ~~~s~~~~~~t  240 (245)
                      ...+..+.|.+
T Consensus        91 ~~~~~~L~V~s  101 (102)
T d1fhga_          91 ATCTAELLVET  101 (102)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEEEE
Confidence            87777777765

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=7.7e-07  Score=52.72  Aligned_cols=70  Identities=14%  Similarity=0.345  Sum_probs=47.7

Q ss_pred             eEEecCCCeEEEEEEEeecCCCeEEEEECCE--EeccC------------CcEEEEe---cCceeEEEEccCCCCCCeEE
Q psy12131         58 WIHTAPDMRAEIICNVYANPPAKVEWFRDGT--AITLG------------GRIDMHV---SSEKHSLLVRHIKDTDFGNY  120 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~--~~~~~------------~~~~~~~---~~~~~~l~i~~~~~~d~g~y  120 (245)
                      .+...+|++++|.|.........+.|++...  .+...            .++....   .....+|.|.+++.+|+|.|
T Consensus         3 ~V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y   82 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (97)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEE
Confidence            3556789999999998776667899997432  11111            1111110   11245799999999999999


Q ss_pred             EEEEEeC
Q psy12131        121 MCQASNN  127 (245)
Q Consensus       121 ~C~~~n~  127 (245)
                      .|.+.+.
T Consensus        83 ~C~v~~~   89 (97)
T d2nxyb1          83 ICEVEDQ   89 (97)
T ss_dssp             EEEETTE
T ss_pred             EEEEecC
Confidence            9999763

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.32  E-value=4.4e-06  Score=50.62  Aligned_cols=76  Identities=24%  Similarity=0.384  Sum_probs=53.1

Q ss_pred             EEeecceEEecCCCeEEEEEEEeec--CCCeEEEEEC--C----EEeccCCcEEEEe--cCceeEEEEccCCCCCCeEEE
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYAN--PPAKVEWFRD--G----TAITLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~~~w~~~--~----~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      +...|..+.+..|+.++|.|...+.  ....+.||+.  +    ..+....++....  ......|.|.+++.+|.|.|.
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   81 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYR   81 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEe
Confidence            3456667888899999999988543  3457999971  1    2233334444332  223568999999999999999


Q ss_pred             EEEEeC
Q psy12131        122 CQASNN  127 (245)
Q Consensus       122 C~~~n~  127 (245)
                      |.+...
T Consensus        82 CA~~~~   87 (112)
T d1sq2n_          82 CGLGVA   87 (112)
T ss_dssp             EEECBT
T ss_pred             EEEecC
Confidence            987654

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.31  E-value=6.1e-06  Score=50.40  Aligned_cols=77  Identities=14%  Similarity=0.309  Sum_probs=52.1

Q ss_pred             EEeecceEEecCCCeEEEEEEEeec-CCCeEEEEE--CC-EE--ec------------cCCcEEEEe--cCceeEEEEcc
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYAN-PPAKVEWFR--DG-TA--IT------------LGGRIDMHV--SSEKHSLLVRH  111 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~w~~--~~-~~--~~------------~~~~~~~~~--~~~~~~l~i~~  111 (245)
                      +...+..+.+.+|+.++|.|...+. ....+.|++  .+ .+  +.            ...++....  ......|+|.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            3445566778899999999998654 345789986  11 11  10            113444432  22345899999


Q ss_pred             CCCCCCeEEEEEEEeCC
Q psy12131        112 IKDTDFGNYMCQASNNL  128 (245)
Q Consensus       112 ~~~~d~g~y~C~~~n~~  128 (245)
                      ++.+|.|.|.|.+....
T Consensus        83 ~~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          83 VRTEDSATYYCAFTLPP   99 (116)
T ss_dssp             CCGGGCEEEEEEEECTT
T ss_pred             ccccccccceeeEecCC
Confidence            99999999999877644

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.9e-07  Score=56.21  Aligned_cols=87  Identities=16%  Similarity=0.039  Sum_probs=51.1

Q ss_pred             ccccCCCeeEEEEEeC-CCCCceEEEEEEEeec--CCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEec
Q psy12131        150 SRRLGPDGYRLVWQVD-TYSGIIQYLLKFRERE--ELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNR  226 (245)
Q Consensus       150 ~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~  226 (245)
                      .....|+.+.|.|.+. ++++ ..+ .|+++..  .............. .........+.|.++...+.+.|+|.|.|.
T Consensus        12 ~~v~~G~~v~l~C~~~~g~p~-p~v-~W~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~   88 (104)
T d1nbqa2          12 SSATIGNRAVLTCSEQDGSPP-SEY-TWFKDGIVMPTNPKSTRAFSNSS-YVLNPTTGELVFDPLSASDTGEYSCEARNG   88 (104)
T ss_dssp             SEEETTSCEEECCCCCSCBSC-CEE-EEEETTCCCCSCSSSSSSCTTCC-CCCCTTTCCEEESSCCGGGCCCEEEEEECS
T ss_pred             CEEecCCcEEEEEEeecCCCC-CEE-EEEECCEEccCCCceeEEeeCCc-EEEeecccceEECCCCcccCcEEEEEEEEC
Confidence            3456799999999984 4433 333 3555543  11111111111100 011111246788899888888889999999


Q ss_pred             CCCCCCCcceEEe
Q psy12131        227 FGWSRPSKAYVFA  239 (245)
Q Consensus       227 ~G~~~~s~~~~~~  239 (245)
                      +|....|..+++.
T Consensus        89 ~G~~~~s~~v~v~  101 (104)
T d1nbqa2          89 YGTPMTSNAVRME  101 (104)
T ss_dssp             SSCCEECCCBCCE
T ss_pred             CCceEEEEEEEEE
Confidence            9998777776654

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=7.9e-07  Score=53.60  Aligned_cols=74  Identities=16%  Similarity=0.302  Sum_probs=51.5

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEE--CCE-E--e---------ccCCcEEEEecCceeEEEEccCCCCCCe
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGT-A--I---------TLGGRIDMHVSSEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~-~--~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g  118 (245)
                      ...|..+.+.+|++++|.|.........+.||+  .+. +  +         ....++.....+....|.|.+++++|.|
T Consensus         5 tQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d3cx5k1           5 TQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIA   84 (107)
T ss_dssp             EEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCS
T ss_pred             ECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCC
Confidence            345566778899999999997665555799997  221 1  1         0112333334455679999999999999


Q ss_pred             EEEEEEEe
Q psy12131        119 NYMCQASN  126 (245)
Q Consensus       119 ~y~C~~~n  126 (245)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d3cx5k1          85 TYFCQHHI   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             cEEeeeCC
Confidence            99997653

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.9e-06  Score=52.83  Aligned_cols=86  Identities=15%  Similarity=0.305  Sum_probs=54.9

Q ss_pred             ecceEEecCCCeEEEEEEEeecC---CCeEEEEECCE-----Ee---------ccCCcEEE--EecCceeEEEEccCCCC
Q psy12131         55 EKQWIHTAPDMRAEIICNVYANP---PAKVEWFRDGT-----AI---------TLGGRIDM--HVSSEKHSLLVRHIKDT  115 (245)
Q Consensus        55 ~~~~~~~~~g~~~~l~C~~~~~~---~~~~~w~~~~~-----~~---------~~~~~~~~--~~~~~~~~l~i~~~~~~  115 (245)
                      .|..+.+.+|++++|.|......   ...+.|++...     .+         ....++.+  ........|+|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            45567788999999999975321   23578987321     11         01122332  22334568999999999


Q ss_pred             CCeEEEEEEEeCCceeEEEEEEEec
Q psy12131        116 DFGNYMCQASNNLGSSQQFIQLSGI  140 (245)
Q Consensus       116 d~g~y~C~~~n~~g~~~~~~~~~~~  140 (245)
                      |.|.|.|.+..........+.|.+.
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V~  109 (116)
T d1xeda_          85 DSGRYKCGLGINSRGLSFDVSLEVL  109 (116)
T ss_dssp             GCEEEEEEESCGGGCCEEEEEEEEE
T ss_pred             CCEEEEEEEEcCCCCceEeEEEEEE
Confidence            9999999987554444445566554

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=9.8e-07  Score=52.78  Aligned_cols=38  Identities=24%  Similarity=0.406  Sum_probs=29.6

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNV   46 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v   46 (245)
                      .+++|.|.+++.+|+|.|+|.|.|..|.. ....+.|.|
T Consensus        63 ~~~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~V  101 (102)
T d1f97a1          63 SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV  101 (102)
T ss_dssp             ETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEE
T ss_pred             cCCEEEEeECCccCCEEEEEEEEECCCCEEEEEEEEEEE
Confidence            34679999999999999999999998873 233444444

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=3.7e-06  Score=49.02  Aligned_cols=72  Identities=13%  Similarity=0.230  Sum_probs=52.1

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS  125 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  125 (245)
                      .+|.+...|..+ +..|.+|+|.|... .+...+.|+|++....    ...........+.|.++...|.|.|+|...
T Consensus         3 pkPsLsa~P~~~-V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~----~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           3 DTPTLSVHPGPE-VISGEKVTFYCRLD-TATSMFLLLKEGRSSH----VQRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CCCEEEEESCSE-EETTCEEEEEEECS-SSCSEEEEEEESSSCE----EEEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCCEEEEeCCCc-ccCCCcEEEEECCC-CCCCEEEEEECCCccc----eeecCCCceeEEEecccChhcCceEEEEeE
Confidence            467777777544 77899999999964 3456888998765322    122233456789999999999999999754

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=2.3e-06  Score=52.48  Aligned_cols=73  Identities=16%  Similarity=0.356  Sum_probs=51.4

Q ss_pred             eecceEEecCCCeEEEEEEEeecCCCeEEEEEC--C---EEec---------cCCcEEEEecCceeEEEEccCCCCCCeE
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--G---TAIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGN  119 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~---~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~  119 (245)
                      ..|..+.+.+|++++|.|...+.....+.|++-  +   ..+.         ...++.....+....|.|.++..+|.|.
T Consensus         6 Q~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsav   85 (119)
T d1f3rb2           6 QSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVAT   85 (119)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSE
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeE
Confidence            445667788999999999976554457899972  1   1111         1234444444556789999999999999


Q ss_pred             EEEEEEe
Q psy12131        120 YMCQASN  126 (245)
Q Consensus       120 y~C~~~n  126 (245)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (119)
T d1f3rb2          86 YFCYQYN   92 (119)
T ss_dssp             EEEEEES
T ss_pred             EEeeccC
Confidence            9997664

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.28  E-value=2e-06  Score=51.46  Aligned_cols=70  Identities=26%  Similarity=0.488  Sum_probs=50.0

Q ss_pred             eEEecCCCeEEEEEEEeecCCCeEEEEE--CCEE---e---------ccCCcEEEEecCceeEEEEccCCCCCCeEEEEE
Q psy12131         58 WIHTAPDMRAEIICNVYANPPAKVEWFR--DGTA---I---------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ  123 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  123 (245)
                      .+.+.+|+.++|.|.........+.|++  .+..   +         ....++..........|.|.++..+|.|.|.|.
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA   86 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQ   86 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEee
Confidence            5678899999999987655555789997  1111   1         012344444555678999999999999999998


Q ss_pred             EEeC
Q psy12131        124 ASNN  127 (245)
Q Consensus       124 ~~n~  127 (245)
                      +...
T Consensus        87 ~~~~   90 (103)
T d8faba1          87 AWDN   90 (103)
T ss_dssp             EEET
T ss_pred             ecCC
Confidence            6653

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.27  E-value=3.2e-06  Score=52.02  Aligned_cols=85  Identities=16%  Similarity=0.281  Sum_probs=51.2

Q ss_pred             ecceEEecCCCeEEEEEEEeec----CCCeEEEEEC--CE----Ee---------c-c----CCcEEEEe--cCceeEEE
Q psy12131         55 EKQWIHTAPDMRAEIICNVYAN----PPAKVEWFRD--GT----AI---------T-L----GGRIDMHV--SSEKHSLL  108 (245)
Q Consensus        55 ~~~~~~~~~g~~~~l~C~~~~~----~~~~~~w~~~--~~----~~---------~-~----~~~~~~~~--~~~~~~l~  108 (245)
                      .+..+.+..|++++|.|.....    ....+.|++.  +.    .+         . .    ..++.+..  ......|.
T Consensus         5 ~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (119)
T d1neua_           5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV   84 (119)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred             CCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEE
Confidence            4556778899999999997532    2237899861  11    11         0 0    01222211  12345799


Q ss_pred             EccCCCCCCeEEEEEEEeCCce--eEEEEEEEe
Q psy12131        109 VRHIKDTDFGNYMCQASNNLGS--SQQFIQLSG  139 (245)
Q Consensus       109 i~~~~~~d~g~y~C~~~n~~g~--~~~~~~~~~  139 (245)
                      |.+++..|.|.|.|.+.+..+.  ....+.|.+
T Consensus        85 I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          85 IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             ECSCCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             ECCCChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            9999999999999999875432  233444443

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.27  E-value=2.7e-06  Score=51.33  Aligned_cols=73  Identities=21%  Similarity=0.424  Sum_probs=51.5

Q ss_pred             eecceEEecCCCeEEEEEEEeec-CCCeEEEEEC--CE---Eec---------cCCcEEEEecCceeEEEEccCCCCCCe
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYAN-PPAKVEWFRD--GT---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~w~~~--~~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g  118 (245)
                      ..|..+.+.+|+.++|.|..... ....+.|++-  +.   .+.         ...++.....+....|.|.++..+|.|
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa   85 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFA   85 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccE
Confidence            44667778999999999987543 2346889872  21   111         123455555556778999999999999


Q ss_pred             EEEEEEEe
Q psy12131        119 NYMCQASN  126 (245)
Q Consensus       119 ~y~C~~~n  126 (245)
                      .|.|.+..
T Consensus        86 ~YyCa~~~   93 (108)
T d2fx7l1          86 VYYCQQYG   93 (108)
T ss_dssp             EEEEEECS
T ss_pred             EEeeecCC
Confidence            99998653

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=3.2e-07  Score=55.22  Aligned_cols=37  Identities=22%  Similarity=0.203  Sum_probs=31.4

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEec
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY   48 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~   48 (245)
                      .|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.+
T Consensus        66 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          66 ILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEEccccHHHCCeEEEEEEcCCCeEEEEEEEEEEEE
Confidence            4999999999999999999999887555677777753

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=4.2e-07  Score=53.48  Aligned_cols=41  Identities=20%  Similarity=0.152  Sum_probs=31.9

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      |+.+.....+|+|.+++++|+|.|+|.+.+..+   +..+.|.|
T Consensus        52 ~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~~---t~~~~l~V   92 (93)
T d1ccza1          52 RVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD---TMKFFLYV   92 (93)
T ss_dssp             SEEECTTTCCEEECSCCGGGCEEEEEECTTCCS---CEEEEEEE
T ss_pred             eEEEcCCeeEEEEEecChhhCEEEEEEEECCCc---EEEEEEEE
Confidence            455555667799999999999999999987654   44566665

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2.9e-06  Score=51.71  Aligned_cols=76  Identities=16%  Similarity=0.221  Sum_probs=53.3

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecC-CCeEEEEEC----CE-Ee---c------------cCCcEEEEecCceeEEEEc
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANP-PAKVEWFRD----GT-AI---T------------LGGRIDMHVSSEKHSLLVR  110 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~w~~~----~~-~~---~------------~~~~~~~~~~~~~~~l~i~  110 (245)
                      +...|....+..|++++|.|...... ...+.|++-    +. .+   .            ...++..........|.|.
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~   82 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLS   82 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEES
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEc
Confidence            34556677788999999999986543 346899971    11 11   0            0124454445556789999


Q ss_pred             cCCCCCCeEEEEEEEeC
Q psy12131        111 HIKDTDFGNYMCQASNN  127 (245)
Q Consensus       111 ~~~~~d~g~y~C~~~n~  127 (245)
                      +++.+|.|.|.|.+...
T Consensus        83 ~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          83 DFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             cCCCCCCEEEeEeEcCC
Confidence            99999999999998754

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.26  E-value=5.2e-06  Score=50.25  Aligned_cols=74  Identities=18%  Similarity=0.367  Sum_probs=51.2

Q ss_pred             eecceEEecCCCeEEEEEEEeec----CCCeEEEEE--CCE---Ee---------ccCCcEEEEecCceeEEEEccCCCC
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYAN----PPAKVEWFR--DGT---AI---------TLGGRIDMHVSSEKHSLLVRHIKDT  115 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~----~~~~~~w~~--~~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~  115 (245)
                      ..|..+.+.+|+.++|.|.....    ....+.|++  .+.   .+         ....++.....+....|.|.++..+
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   85 (111)
T d1j05a_           6 QSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEAD   85 (111)
T ss_dssp             EECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGG
T ss_pred             ccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccc
Confidence            45667778899999999987432    123488987  221   11         0112445555566789999999999


Q ss_pred             CCeEEEEEEEeC
Q psy12131        116 DFGNYMCQASNN  127 (245)
Q Consensus       116 d~g~y~C~~~n~  127 (245)
                      |.|.|.|.+.+.
T Consensus        86 Dsa~YyCa~~~~   97 (111)
T d1j05a_          86 DVATYYCQQTNE   97 (111)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cCccEEEeecCC
Confidence            999999976643

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=3.6e-06  Score=49.42  Aligned_cols=74  Identities=14%  Similarity=0.185  Sum_probs=52.9

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      +|.+...+.. .+..|.+++|.|.........+.|++++......    .........+.|.++...|.|.|+|.....
T Consensus         5 kP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~----~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           5 KPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ----HQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS----EEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceE----EcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            5666666644 5789999999998643344578899988533221    122234568999999999999999987653

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.24  E-value=7.8e-06  Score=50.08  Aligned_cols=76  Identities=18%  Similarity=0.316  Sum_probs=53.3

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCCCeEEEEE--CCEE---e-----------c---cCCcEEEEe-cCceeEEEEcc
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGTA---I-----------T---LGGRIDMHV-SSEKHSLLVRH  111 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~~---~-----------~---~~~~~~~~~-~~~~~~l~i~~  111 (245)
                      +...|....+.+|+.++|.|...+.....+.|++  .+..   +           .   ...++.... .+....|.|.+
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~   83 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS   83 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence            4455667778999999999998766667899997  2211   0           0   112344332 33456899999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy12131        112 IKDTDFGNYMCQASNN  127 (245)
Q Consensus       112 ~~~~d~g~y~C~~~n~  127 (245)
                      +.++|.|.|.|.+...
T Consensus        84 ~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          84 AHPEDSGFYVCSALAG   99 (118)
T ss_dssp             CCGGGCEEEEEEEECS
T ss_pred             cccccCceEEEEEecC
Confidence            9999999999988654

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.23  E-value=1.1e-05  Score=48.99  Aligned_cols=70  Identities=24%  Similarity=0.447  Sum_probs=50.3

Q ss_pred             eEEecCCCeEEEEEEEeecC--CCeEEEEEC--CE---Ee---------ccCCcEEEEecCceeEEEEccCCCCCCeEEE
Q psy12131         58 WIHTAPDMRAEIICNVYANP--PAKVEWFRD--GT---AI---------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      .+.+.+|+.++|.|...+..  ...+.||+-  +.   .+         ....++.....+....|.|.++..+|.+.|.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence            56788999999999986543  357899972  11   11         1123455544556789999999999999999


Q ss_pred             EEEEeC
Q psy12131        122 CQASNN  127 (245)
Q Consensus       122 C~~~n~  127 (245)
                      |.....
T Consensus        89 CA~~~~   94 (114)
T d2rhea_          89 CAAWND   94 (114)
T ss_dssp             EEEEET
T ss_pred             EeecCC
Confidence            987643

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.23  E-value=6.1e-06  Score=50.08  Aligned_cols=73  Identities=16%  Similarity=0.365  Sum_probs=51.5

Q ss_pred             cceEEecCCCeEEEEEEEeecCC---CeEEEEEC--CE---Ee---------ccCCcEEEEecCceeEEEEccCCCCCCe
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPP---AKVEWFRD--GT---AI---------TLGGRIDMHVSSEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~---~~~~w~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g  118 (245)
                      |..+.+.+|++++|.|...+...   ..+.|++-  +.   .+         ....++..........|.|.+++.+|.+
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            44677889999999999865422   35899971  11   11         1123455555556789999999999999


Q ss_pred             EEEEEEEeCC
Q psy12131        119 NYMCQASNNL  128 (245)
Q Consensus       119 ~y~C~~~n~~  128 (245)
                      .|.|.+.+..
T Consensus        87 ~YyCa~~~~~   96 (112)
T d1lgva1          87 DYYCSSYDGS   96 (112)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEeeecCC
Confidence            9999877543

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.23  E-value=6.5e-07  Score=52.48  Aligned_cols=36  Identities=14%  Similarity=0.133  Sum_probs=28.2

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      +.+|.|.+++..|+|.|+|.|.|..+. ......+.|
T Consensus        55 ~~~L~I~~~~~~D~G~Y~C~a~n~~~~-~~~~~~i~V   90 (92)
T d1epfa2          55 NNYLQIRGIKKTDEGTYRCEGRILARG-EINFKDIQV   90 (92)
T ss_dssp             TSCEEETTCCGGGCEEEEEEEEEGGGT-EEEEEEEEE
T ss_pred             eeeEEECCCCHHhCEEEEEEEEECcCC-EEEEEEEEE
Confidence            346999999999999999999997665 344455554

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.23  E-value=7.7e-06  Score=49.44  Aligned_cols=75  Identities=15%  Similarity=0.309  Sum_probs=51.4

Q ss_pred             EeecceEEecCCCeEEEEEEEeec-CC---CeEEEEEC--CE---Ee-c--------cCCcEEEEecCceeEEEEccCCC
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYAN-PP---AKVEWFRD--GT---AI-T--------LGGRIDMHVSSEKHSLLVRHIKD  114 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~-~~---~~~~w~~~--~~---~~-~--------~~~~~~~~~~~~~~~l~i~~~~~  114 (245)
                      ...|..+.+.+|+.++|.|..... ..   ..+.|++-  +.   .+ .        ...++.....+....|.|.++++
T Consensus         5 tQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~   84 (111)
T d2gsia1           5 TQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEE   84 (111)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             EeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccc
Confidence            345667778899999999987532 11   24889872  11   11 0        12355555555678999999999


Q ss_pred             CCCeEEEEEEEeC
Q psy12131        115 TDFGNYMCQASNN  127 (245)
Q Consensus       115 ~d~g~y~C~~~n~  127 (245)
                      +|.+.|.|.+...
T Consensus        85 ~DsA~YyCa~~~~   97 (111)
T d2gsia1          85 EDAATYYCSHIRE   97 (111)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             cCCceEEEEECCC
Confidence            9999999976543

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.23  E-value=1.9e-05  Score=48.04  Aligned_cols=75  Identities=17%  Similarity=0.379  Sum_probs=50.5

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEE--CCEE---e---------ccCCcEEE--EecCceeEEEEccCCCCC
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGTA---I---------TLGGRIDM--HVSSEKHSLLVRHIKDTD  116 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~~---~---------~~~~~~~~--~~~~~~~~l~i~~~~~~d  116 (245)
                      ...|..+.+.+|+.++|.|...+. ...+.||+  .+..   +         ....++..  ........|.|.++..+|
T Consensus         4 ~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (115)
T d1ogad1           4 EQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGD   82 (115)
T ss_dssp             EEECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGG
T ss_pred             EeCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccc
Confidence            345667788999999999997643 34788987  1110   0         11122222  223456789999999999


Q ss_pred             CeEEEEEEEeCC
Q psy12131        117 FGNYMCQASNNL  128 (245)
Q Consensus       117 ~g~y~C~~~n~~  128 (245)
                      .|.|.|.+....
T Consensus        83 sa~YyCa~~~~~   94 (115)
T d1ogad1          83 TGLYLCAGAGSQ   94 (115)
T ss_dssp             CEEEEEEEECTT
T ss_pred             eeeEcccccCCC
Confidence            999999877543

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.22  E-value=6.8e-06  Score=49.68  Aligned_cols=76  Identities=16%  Similarity=0.267  Sum_probs=51.7

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCCCeEEEEE--CCE-E--ec---------cCCcEEEEe--cCceeEEEEccCCCC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGT-A--IT---------LGGRIDMHV--SSEKHSLLVRHIKDT  115 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~-~--~~---------~~~~~~~~~--~~~~~~l~i~~~~~~  115 (245)
                      +...+..+.+.+|+.++|.|.........+.|++  .+. +  +.         ...++....  .+....|.|.++.++
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~   82 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES   82 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence            3455667788999999999998765556799997  121 1  10         112233221  233568999999999


Q ss_pred             CCeEEEEEEEeC
Q psy12131        116 DFGNYMCQASNN  127 (245)
Q Consensus       116 d~g~y~C~~~n~  127 (245)
                      |.|.|.|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (110)
T d1ac6a_          83 DSAVYYCALSGG   94 (110)
T ss_dssp             GCEEEEEEEEET
T ss_pred             CCcccceeecCC
Confidence            999999987654

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4.3e-07  Score=53.21  Aligned_cols=26  Identities=19%  Similarity=0.460  Sum_probs=23.8

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCC
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGE   36 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~   36 (245)
                      .+|.|.+++++|+|.|+|.|.|..+.
T Consensus        50 ~~L~I~~v~~~DsG~Y~C~A~n~~g~   75 (92)
T d1olza1          50 KNLLIFNLSEGDSGVYQCLSEERVKN   75 (92)
T ss_dssp             TCEEECSCCGGGCEEEEEEEEEECSS
T ss_pred             eEEEECCCCHHHCcEEEEEEEEcCCC
Confidence            45999999999999999999998776

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.21  E-value=4.8e-07  Score=54.50  Aligned_cols=35  Identities=17%  Similarity=0.208  Sum_probs=28.9

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCCCC
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNIGE   36 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~   36 (245)
                      .|+.......+|.|.+++.+|+|.|+|.|.|..|.
T Consensus        52 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~   86 (105)
T d1cs6a2          52 GRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDF   86 (105)
T ss_dssp             SSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             ceeeeecCCCEEeecccccccCcEEEEEEEECCCC
Confidence            34445555667999999999999999999998876

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.21  E-value=1e-05  Score=49.00  Aligned_cols=74  Identities=18%  Similarity=0.362  Sum_probs=51.5

Q ss_pred             EeecceEEecCCCeEEEEEEEeecC-----CCeEEEEE--CCE---Ee---------ccCCcEEEEecCceeEEEEccCC
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANP-----PAKVEWFR--DGT---AI---------TLGGRIDMHVSSEKHSLLVRHIK  113 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~-----~~~~~w~~--~~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~  113 (245)
                      ...|..+.+.+|+.++|.|...+..     ...+.||+  .+.   .+         ....++.....+....|.|.++.
T Consensus         6 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~   85 (113)
T d1n4xl_           6 TQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVE   85 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCC
T ss_pred             eCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCC
Confidence            4456677889999999999975432     23688987  121   11         11234555555667899999999


Q ss_pred             CCCCeEEEEEEEe
Q psy12131        114 DTDFGNYMCQASN  126 (245)
Q Consensus       114 ~~d~g~y~C~~~n  126 (245)
                      .+|.+.|.|...+
T Consensus        86 ~~DsavYyCa~~~   98 (113)
T d1n4xl_          86 AEDLGIYYCFQGS   98 (113)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             cccCEEEEEEECC
Confidence            9999999996543

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.20  E-value=8.6e-06  Score=49.44  Aligned_cols=74  Identities=15%  Similarity=0.357  Sum_probs=50.6

Q ss_pred             EeecceEEecCCCeEEEEEEEeecC------CCeEEEEEC--CEE---e---------ccCCcEEEEecCceeEEEEccC
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANP------PAKVEWFRD--GTA---I---------TLGGRIDMHVSSEKHSLLVRHI  112 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~------~~~~~w~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~~  112 (245)
                      ...|..+.+.+|+.++|.|...+..      ..-+.|++.  +..   +         ....++.....+....|.|.++
T Consensus         5 tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l   84 (113)
T d1q9ra1           5 SQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSV   84 (113)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             EccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccc
Confidence            3456677888999999999875321      124889872  211   1         1123444444556678999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12131        113 KDTDFGNYMCQASN  126 (245)
Q Consensus       113 ~~~d~g~y~C~~~n  126 (245)
                      +++|.|.|.|.+..
T Consensus        85 ~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          85 QAEDLAVYYCKQSY   98 (113)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             ccCCCeEEEecccC
Confidence            99999999997653

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.19  E-value=1.7e-05  Score=47.91  Aligned_cols=75  Identities=17%  Similarity=0.325  Sum_probs=51.2

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCCCeEEEEE--CC-EE--ec-------------cCCcEEEEecCceeEEEEccCC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DG-TA--IT-------------LGGRIDMHVSSEKHSLLVRHIK  113 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~-~~--~~-------------~~~~~~~~~~~~~~~l~i~~~~  113 (245)
                      +...|....+.+|+.++|.|...+ ....+.||+  .+ .+  +.             ...............|.|.++.
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESAT   82 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCC
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCC
Confidence            455677788899999999998754 345799997  12 11  10             0111222333456789999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy12131        114 DTDFGNYMCQASNN  127 (245)
Q Consensus       114 ~~d~g~y~C~~~n~  127 (245)
                      .+|.|.|.|.+...
T Consensus        83 ~~Dsa~YyCa~~~~   96 (110)
T d2aq2a1          83 PSQTSVYFCASGGG   96 (110)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             HhhCEEEEEeeCCC
Confidence            99999999987643

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.19  E-value=1.7e-05  Score=47.29  Aligned_cols=73  Identities=18%  Similarity=0.350  Sum_probs=50.1

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--CE---Eec---------cCCcEEEEecCceeEEEEccCCCCCCe
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GT---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g  118 (245)
                      ...|..+.+.+|+.++|.|.... ....+.||+-  +.   .+.         ....+.....+....|.|.++..+|.|
T Consensus         4 tQsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   82 (104)
T d1yqvl1           4 TQSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAA   82 (104)
T ss_dssp             EEESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eCcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCC
Confidence            35566778899999999998643 3345789872  11   110         112344444456678999999999999


Q ss_pred             EEEEEEEe
Q psy12131        119 NYMCQASN  126 (245)
Q Consensus       119 ~y~C~~~n  126 (245)
                      .|.|....
T Consensus        83 ~YyCa~~~   90 (104)
T d1yqvl1          83 TYYCQQWG   90 (104)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEecC
Confidence            99997543

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.19  E-value=9.5e-06  Score=48.86  Aligned_cols=70  Identities=16%  Similarity=0.278  Sum_probs=49.8

Q ss_pred             eEEecCCCeEEEEEEEeecCC---CeEEEEE---CCEEe-----------ccCCcEEEEecCceeEEEEccCCCCCCeEE
Q psy12131         58 WIHTAPDMRAEIICNVYANPP---AKVEWFR---DGTAI-----------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNY  120 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~---~~~~w~~---~~~~~-----------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  120 (245)
                      .+.+.+|+.++|.|...+...   ..+.|++   +..+.           ....++.....+....|.|.++..+|.|.|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence            566789999999999864322   2388986   22221           112455555566778999999999999999


Q ss_pred             EEEEEeC
Q psy12131        121 MCQASNN  127 (245)
Q Consensus       121 ~C~~~n~  127 (245)
                      .|.....
T Consensus        89 yCa~~~~   95 (110)
T d1oaql_          89 FCALWYS   95 (110)
T ss_dssp             EEEEEET
T ss_pred             EEEcccC
Confidence            9987653

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.5e-05  Score=46.94  Aligned_cols=72  Identities=13%  Similarity=0.317  Sum_probs=47.9

Q ss_pred             ceEEecCCCeEEEEEEEeecC--CCeEEEEEC--CEE---e---------ccCCcEEEE--ecCceeEEEEccCCCCCCe
Q psy12131         57 QWIHTAPDMRAEIICNVYANP--PAKVEWFRD--GTA---I---------TLGGRIDMH--VSSEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~--~~~---~---------~~~~~~~~~--~~~~~~~l~i~~~~~~d~g  118 (245)
                      +.+.+.+|++++|.|......  ...+.|++.  +..   +         ....++.+.  .......|.|.+++.+|.|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG   83 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG   83 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence            346778999999999875432  236789872  111   1         011233332  2344678999999999999


Q ss_pred             EEEEEEEeCC
Q psy12131        119 NYMCQASNNL  128 (245)
Q Consensus       119 ~y~C~~~n~~  128 (245)
                      .|.|.+....
T Consensus        84 ~Y~C~v~~~~   93 (108)
T d1hkfa_          84 HYWCRIYRPS   93 (108)
T ss_dssp             EEEEEEECTT
T ss_pred             EEEEEEecCC
Confidence            9999987544

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.17  E-value=7.9e-06  Score=49.45  Aligned_cols=71  Identities=18%  Similarity=0.405  Sum_probs=50.3

Q ss_pred             ceEEecCCCeEEEEEEEeecC--CCeEEEEEC--C---EEe---------ccCCcEEEEecCceeEEEEccCCCCCCeEE
Q psy12131         57 QWIHTAPDMRAEIICNVYANP--PAKVEWFRD--G---TAI---------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNY  120 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~--~---~~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  120 (245)
                      ..+.+.+|+.++|.|...+..  ...+.|++-  +   ..+         ....++.....+....|.|.+++++|.|.|
T Consensus         8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Y   87 (111)
T d1rzfl1           8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADY   87 (111)
T ss_dssp             SEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             cceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcce
Confidence            357788999999999976432  245999961  1   111         112345555556678999999999999999


Q ss_pred             EEEEEeC
Q psy12131        121 MCQASNN  127 (245)
Q Consensus       121 ~C~~~n~  127 (245)
                      .|.+...
T Consensus        88 yCA~~~~   94 (111)
T d1rzfl1          88 YCGTWDS   94 (111)
T ss_dssp             EEEEEET
T ss_pred             EEeecCC
Confidence            9987654

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.17  E-value=1.1e-05  Score=49.19  Aligned_cols=73  Identities=16%  Similarity=0.261  Sum_probs=49.5

Q ss_pred             eecceEEecCCCeEEEEEEEeec-CCCeEEEEEC-----CEEe------c-----------cCCcEEEEe--cCceeEEE
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYAN-PPAKVEWFRD-----GTAI------T-----------LGGRIDMHV--SSEKHSLL  108 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~w~~~-----~~~~------~-----------~~~~~~~~~--~~~~~~l~  108 (245)
                      ..|..+.+.+|+.+.|.|...+. ....+.|++-     ...+      .           ...++....  ......|.
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS   82 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEe
Confidence            45667788999999999998764 3457899862     2211      0           011222222  23356899


Q ss_pred             EccCCCCCCeEEEEEEEe
Q psy12131        109 VRHIKDTDFGNYMCQASN  126 (245)
Q Consensus       109 i~~~~~~d~g~y~C~~~n  126 (245)
                      |.+++.+|.|.|.|.+..
T Consensus        83 I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          83 IMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             ECSCCGGGCEEEEEEEEC
T ss_pred             ecccCCCCCcEEEEeEcC
Confidence            999999999999998754

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=7.2e-07  Score=51.38  Aligned_cols=37  Identities=19%  Similarity=0.274  Sum_probs=30.5

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      ..+.|.....+|+|.|+|.|.|..|...++.+.|.|+
T Consensus        49 ~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v~Vk   85 (85)
T d1rhfa2          49 SPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ   85 (85)
T ss_dssp             SSEEEEECCCSSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             cceEEecCCccccEEEEEEEEcCCCcEEEEEEEEEEC
Confidence            3477888888999999999999999756777777763

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.15  E-value=1e-05  Score=49.07  Aligned_cols=76  Identities=25%  Similarity=0.459  Sum_probs=49.5

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCCCeEEEEE---CCEEe---ccC------CcE-EE--EecCceeEEEEccCCCCC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR---DGTAI---TLG------GRI-DM--HVSSEKHSLLVRHIKDTD  116 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~---~~~~~---~~~------~~~-~~--~~~~~~~~l~i~~~~~~d  116 (245)
                      +...|..+.+.+|+.++|.|.... ....+.||+   +..+.   ...      ... ..  ........|.|.++..+|
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             eEECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhH
Confidence            345566778889999999999864 345789987   11111   000      000 00  011234689999999999


Q ss_pred             CeEEEEEEEeCC
Q psy12131        117 FGNYMCQASNNL  128 (245)
Q Consensus       117 ~g~y~C~~~n~~  128 (245)
                      .|.|.|.+....
T Consensus        83 sa~YyCa~~~~~   94 (113)
T d1h5ba_          83 SGTYFCAAEASS   94 (113)
T ss_dssp             CEEEEEEEECSS
T ss_pred             CEEEEEEecCCC
Confidence            999999887544

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.15  E-value=1.2e-05  Score=48.74  Aligned_cols=72  Identities=18%  Similarity=0.353  Sum_probs=49.6

Q ss_pred             eecceEEecCCCeEEEEEEEeec-----CCCeEEEEE--CCEE---e---------ccCCcEEEEecCceeEEEEccCCC
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYAN-----PPAKVEWFR--DGTA---I---------TLGGRIDMHVSSEKHSLLVRHIKD  114 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~-----~~~~~~w~~--~~~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~  114 (245)
                      ..|..+.+.+|+.++|.|...+.     ....+.|++  .+..   +         ....++.....+....|.|.++..
T Consensus         6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~   85 (112)
T d1mjul1           6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEA   85 (112)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCG
T ss_pred             ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccc
Confidence            34556778899999999987653     134688986  1211   1         011245555556677899999999


Q ss_pred             CCCeEEEEEEE
Q psy12131        115 TDFGNYMCQAS  125 (245)
Q Consensus       115 ~d~g~y~C~~~  125 (245)
                      +|.+.|.|...
T Consensus        86 ~DsAvYyCa~~   96 (112)
T d1mjul1          86 EDVGVYYCLQH   96 (112)
T ss_dssp             GGCEEEEEEEC
T ss_pred             cCCceEEEEeC
Confidence            99999999643

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=8.3e-07  Score=53.41  Aligned_cols=35  Identities=26%  Similarity=0.406  Sum_probs=28.6

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN   45 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~   45 (245)
                      +++|.|.+++.+|+|.|+|.|.|..|.. ...+.|.
T Consensus        67 ~~~L~I~~v~~~D~G~Y~C~a~n~~G~~-~~~~~v~  101 (105)
T d1nbqa1          67 PTGITFKSVTREDTGTYTCMVSEEGGNS-YGEVKVK  101 (105)
T ss_dssp             TTEEECSCCCTTSCSEEEEEEEETTSSC-EECCEEE
T ss_pred             CceEEEecccccceeeEEEEEEECCCCE-EEEEEEE
Confidence            4579999999999999999999999883 4444443

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.14  E-value=8.8e-06  Score=49.35  Aligned_cols=71  Identities=11%  Similarity=0.257  Sum_probs=48.3

Q ss_pred             cceEEecCCCeEEEEEEEeecCC-CeEEEEEC--CE---Eec---------cCCcEEEEecCceeEEEEccCCCCCCeEE
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPP-AKVEWFRD--GT---AIT---------LGGRIDMHVSSEKHSLLVRHIKDTDFGNY  120 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~-~~~~w~~~--~~---~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  120 (245)
                      |..+.+.+|++++|.|...+... ..+.|++-  +.   .+.         ...++.+..+.....|.|..+..+|.|.|
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y   84 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVY   84 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeE
Confidence            44567789999999999865443 45899981  21   110         01123333344566899999999999999


Q ss_pred             EEEEEe
Q psy12131        121 MCQASN  126 (245)
Q Consensus       121 ~C~~~n  126 (245)
                      .|.+..
T Consensus        85 yCa~~~   90 (112)
T d1kgcd1          85 YCILPL   90 (112)
T ss_dssp             EEECCC
T ss_pred             eeeEec
Confidence            998764

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.13  E-value=6e-06  Score=49.68  Aligned_cols=71  Identities=21%  Similarity=0.412  Sum_probs=50.0

Q ss_pred             ceEEecCCCeEEEEEEEeecCCCeEEEEEC--CE---Ee---------ccCCcEEEEecCceeEEEEccCCCCCCeEEEE
Q psy12131         57 QWIHTAPDMRAEIICNVYANPPAKVEWFRD--GT---AI---------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC  122 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~---~~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  122 (245)
                      ..+.+.+|++++|.|.........+.|++-  +.   .+         ....++.....+....|.|.+++.+|.+.|.|
T Consensus         8 ~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyC   87 (109)
T d1w72l1           8 PSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYC   87 (109)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEE
Confidence            356778999999999975444456889861  11   11         01234444445567799999999999999999


Q ss_pred             EEEeC
Q psy12131        123 QASNN  127 (245)
Q Consensus       123 ~~~n~  127 (245)
                      .+...
T Consensus        88 A~~~~   92 (109)
T d1w72l1          88 QVWDS   92 (109)
T ss_dssp             EEEET
T ss_pred             EecCC
Confidence            87654

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1e-06  Score=50.58  Aligned_cols=36  Identities=36%  Similarity=0.533  Sum_probs=30.6

Q ss_pred             EEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecC
Q psy12131         13 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP   49 (245)
Q Consensus        13 L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~   49 (245)
                      +.+.+++.+|+|.|+|.|.|..|. .+..+.|.|..|
T Consensus        49 ~~~~~v~~~d~G~Y~C~A~N~~G~-~~~~~~l~V~~P   84 (84)
T d2oz4a3          49 GESVTVTRDLEGTYLCRARSTQGE-VTREVTVNVLSP   84 (84)
T ss_dssp             TSCEECCGGGCEEEEEEEEETTEE-EEEEEEEEEECC
T ss_pred             eeeeccccCCCCEEEEEEEcCCCE-EEEEEEEEEECC
Confidence            457789999999999999999987 688888888643

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.12  E-value=1.5e-05  Score=48.13  Aligned_cols=73  Identities=18%  Similarity=0.333  Sum_probs=49.6

Q ss_pred             eecceEEecCCCeEEEEEEEeecC-----CCeEEEEEC--CEE---e---------ccCCcEEEEecCceeEEEEccCCC
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYANP-----PAKVEWFRD--GTA---I---------TLGGRIDMHVSSEKHSLLVRHIKD  114 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~~-----~~~~~w~~~--~~~---~---------~~~~~~~~~~~~~~~~l~i~~~~~  114 (245)
                      ..|..+.+.+|+.++|.|...+..     ..-+.|++-  +..   +         ....++.....+....|.|.++++
T Consensus         6 QsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~   85 (112)
T d1ncwl1           6 QSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEA   85 (112)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             CcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcccc
Confidence            446677788999999999865322     235889862  111   1         012345444455667899999999


Q ss_pred             CCCeEEEEEEEe
Q psy12131        115 TDFGNYMCQASN  126 (245)
Q Consensus       115 ~d~g~y~C~~~n  126 (245)
                      +|.+.|.|...+
T Consensus        86 eDsAvYYC~~~~   97 (112)
T d1ncwl1          86 EDLGVYYCWQGT   97 (112)
T ss_dssp             GGCEEEEEEECS
T ss_pred             CcCEeEEEEcCC
Confidence            999999996543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.12  E-value=1e-05  Score=49.36  Aligned_cols=75  Identities=12%  Similarity=0.287  Sum_probs=50.4

Q ss_pred             EeecceEEecCCCeEEEEEEEeec-CCCeEEEEE---CCEEe---c---------cCCcEEEEe--cCceeEEEEccCCC
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYAN-PPAKVEWFR---DGTAI---T---------LGGRIDMHV--SSEKHSLLVRHIKD  114 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~w~~---~~~~~---~---------~~~~~~~~~--~~~~~~l~i~~~~~  114 (245)
                      ...+..+.+.+|+.++|.|..... ....+.||+   +..+.   .         ...++....  ......|.|.+++.
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   82 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc
Confidence            445667788999999999987543 334688997   11111   0         012233322  33456899999999


Q ss_pred             CCCeEEEEEEEeC
Q psy12131        115 TDFGNYMCQASNN  127 (245)
Q Consensus       115 ~d~g~y~C~~~n~  127 (245)
                      +|.|.|.|.+...
T Consensus        83 ~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          83 EDSAVYFCAMRGD   95 (115)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             cccccccceeecC
Confidence            9999999987654

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2e-06  Score=50.36  Aligned_cols=37  Identities=22%  Similarity=0.191  Sum_probs=27.5

Q ss_pred             EEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          6 LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         6 ~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ....+.+|.|.+++.+|+|.|+|.|.|..+.    ++.|.|
T Consensus        55 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~----t~~l~V   91 (93)
T d1n26a1          55 WAGMGRRLLLRSVQLHDSGNYSCYRAGRPAG----TVHLLV   91 (93)
T ss_dssp             EEEESSEEEECSCCGGGCEEEEEESSSSCSC----EEEEEE
T ss_pred             EecCCCEEEECCCChhcCEEEEEEECCcccc----EEEEEE
Confidence            3344567999999999999999999865432    445554

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.6e-06  Score=50.86  Aligned_cols=39  Identities=21%  Similarity=0.195  Sum_probs=28.9

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCc---eeeEEEEEEe
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGES---TSKNFIVNVI   47 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~---~~~~~~l~v~   47 (245)
                      .+..|.|.+++.+|+|.|+|.|.|..+..   .+..+.|.|.
T Consensus        56 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~~~vt~~i~~~v~   97 (103)
T d1iray2          56 VKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITL   97 (103)
T ss_dssp             ETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             cCCEEEEcccccccCcEEEEEEEECcCCEEEEEEEEEEEEEC
Confidence            34569999999999999999999877642   2344444444

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.1e-06  Score=53.20  Aligned_cols=37  Identities=24%  Similarity=0.435  Sum_probs=31.3

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      ..+|+|.+++.+|+|.|.|.+.+..+. ....+.|+|.
T Consensus        87 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~~~L~V~  123 (124)
T d1eaja_          87 DASINVTNLQLSDIGTYQCKVKKAPGV-ANKKIHLVVL  123 (124)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEEEEEcccEEccCEEEEEEEEECCCe-EEeEEEEEEE
Confidence            356999999999999999999987665 6777888774

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.09  E-value=1.4e-05  Score=46.74  Aligned_cols=64  Identities=25%  Similarity=0.497  Sum_probs=44.3

Q ss_pred             CCeEEEEEEEeecCCCeEEEEEC--CE---Ee--------ccCCcEEEE--ecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         64 DMRAEIICNVYANPPAKVEWFRD--GT---AI--------TLGGRIDMH--VSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        64 g~~~~l~C~~~~~~~~~~~w~~~--~~---~~--------~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      |+.++|.|.........+.|++-  +.   .+        ....++...  .......|.|.+++++|.|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            68899999987766678999871  11   01        111233332  2334568999999999999999987653

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.08  E-value=2.1e-06  Score=49.26  Aligned_cols=39  Identities=21%  Similarity=0.254  Sum_probs=29.9

Q ss_pred             EEEeecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131          5 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus         5 ~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      .+..++.+|.|.+++.+|+|.|+|.|.+..   .+..+.|.|
T Consensus        46 ~~~~~~~~l~i~~~~~~d~G~Y~C~a~~s~---~S~~v~L~V   84 (84)
T d1fnla1          46 LISSQASSYFIDAATVNDSGEYRCQTNLST---LSDPVQLEV   84 (84)
T ss_dssp             EEESSCSEEEESSCCGGGCEEEEEECSSSC---CCCCEEEEE
T ss_pred             eeeecceeeEecCCcccCCEEEEEEccCCC---ccccEEEEC
Confidence            344556779999999999999999998653   455666654

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.08  E-value=1.3e-05  Score=46.93  Aligned_cols=77  Identities=14%  Similarity=0.125  Sum_probs=51.1

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcE-EEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI-DMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      +|.+...+. ..+..|.+++|.|... .....+.+++++......... ..........+.|..+...|.|.|+|.....
T Consensus         2 KPsLsa~P~-~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           2 KPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCEEEeeCC-CccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            466666664 3477999999999965 445578888876432111111 1111223467999999999999999987654

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=7.3e-06  Score=49.10  Aligned_cols=70  Identities=13%  Similarity=0.285  Sum_probs=47.5

Q ss_pred             eEEecCCCeEEEEEEEeecCC----CeEEEEECCEEecc------------CCcEEEEecCceeEEEEccCCCCCCeEEE
Q psy12131         58 WIHTAPDMRAEIICNVYANPP----AKVEWFRDGTAITL------------GGRIDMHVSSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~----~~~~w~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      .+.+..|+.+.|.|.......    ..+.|.++...+..            ..+.... ..+..+|.|.+++.+|+|.|.
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~-~~g~~sL~I~~v~~~D~G~Y~   81 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD-ITNNLSIVILALRPSDEGTYE   81 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEE-STTTTEEEECSCCGGGCEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeec-cCCcEEEEECcCChHHCeEEE
Confidence            356778999999998753222    26788776654311            1122222 223568999999999999999


Q ss_pred             EEEEeCC
Q psy12131        122 CQASNNL  128 (245)
Q Consensus       122 C~~~n~~  128 (245)
                      |.+.+..
T Consensus        82 C~V~~~~   88 (105)
T d1dr9a1          82 CVVLKYE   88 (105)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            9988654

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.08  E-value=6.9e-07  Score=52.94  Aligned_cols=38  Identities=29%  Similarity=0.380  Sum_probs=30.6

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEE
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN   45 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~   45 (245)
                      .++..|.|..++.+|+|.|+|.|.|..|...+..+.|+
T Consensus        59 ~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          59 VAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             ETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             eeeeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            34566888889999999999999999997556666664

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.2e-05  Score=47.55  Aligned_cols=81  Identities=17%  Similarity=0.285  Sum_probs=46.5

Q ss_pred             ecCCeEEeecceEEecCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEEEEecCc-e-eEEEEccCCCCCCeEEEE
Q psy12131         47 IYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSE-K-HSLLVRHIKDTDFGNYMC  122 (245)
Q Consensus        47 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~-~-~~l~i~~~~~~d~g~y~C  122 (245)
                      ..+|.+...+.. .+..|+.++|.|.+.|..+.  .+.|.+++..+...........+. . .....-.+...+.+.|+|
T Consensus         3 ~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC   81 (100)
T d1k5nb_           3 QRTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC   81 (100)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEE
T ss_pred             cCCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEE
Confidence            346666553221 24568889999999996443  799999998875432211111111 1 111112233445668999


Q ss_pred             EEEeCC
Q psy12131        123 QASNNL  128 (245)
Q Consensus       123 ~~~n~~  128 (245)
                      .+....
T Consensus        82 ~V~H~s   87 (100)
T d1k5nb_          82 RVNHVT   87 (100)
T ss_dssp             EEECTT
T ss_pred             EEEeCC
Confidence            888753

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.07  E-value=2.3e-05  Score=46.16  Aligned_cols=77  Identities=14%  Similarity=0.043  Sum_probs=51.4

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .+|.+...|.. .+..|.+|+|.|... .+...+.|+|++........ ..........+.|..+...|.|.|+|.....
T Consensus         5 pkPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2           5 EKPSLSAQPGP-TVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLP-AGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             CCCEEEEESCS-EECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEEE-CEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CCCEEEEeCCC-cccCCCeEEEEECCC-CCccEEEEEECCCccccEEE-ccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            46777776654 468999999999864 34568889998854322111 1112223456777788888999999987654

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=2.9e-05  Score=45.77  Aligned_cols=80  Identities=18%  Similarity=0.271  Sum_probs=46.2

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcEEEEecCce--eEEEEccCCCCCCeEEEEE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYMCQ  123 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~  123 (245)
                      .+|.+...+.. ....|+.++|.|.+.|..+  ..+.|.+++..+...........+..  .....-.+...+...|+|.
T Consensus         3 ~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~   81 (99)
T d1lk2b_           3 KTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACR   81 (99)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEE
T ss_pred             CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEE
Confidence            45666543321 2346788999999998643  37999999998765433222222211  1111112234455679998


Q ss_pred             EEeCC
Q psy12131        124 ASNNL  128 (245)
Q Consensus       124 ~~n~~  128 (245)
                      +....
T Consensus        82 V~H~s   86 (99)
T d1lk2b_          82 VKHDS   86 (99)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            88753

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.6e-05  Score=45.81  Aligned_cols=77  Identities=12%  Similarity=0.081  Sum_probs=48.7

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcE--EEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRI--DMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      +|.+...+..+ +..|.+|+|.|... .....+.+++++.........  .....+....+.|..+...|.|.|+|....
T Consensus         4 kPsLsa~P~~~-v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   81 (98)
T d1ugna2           4 KPTLSAQPSPV-VNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD   81 (98)
T ss_dssp             CCEEEEESCSE-EETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEEC
T ss_pred             CCEEEeeCCCc-cCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEc
Confidence            56676666543 78999999999964 344577788877643321110  111123456799999999999999998765


Q ss_pred             C
Q psy12131        127 N  127 (245)
Q Consensus       127 ~  127 (245)
                      .
T Consensus        82 ~   82 (98)
T d1ugna2          82 S   82 (98)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=3.4e-06  Score=49.06  Aligned_cols=40  Identities=13%  Similarity=0.129  Sum_probs=29.3

Q ss_pred             ceEEEee--cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          3 EIELLYN--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         3 ~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      ++.+..+  ...|.|.+++.+|+|.|+|.|.|.     ..++.|.|.
T Consensus        47 ~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~-----~~~a~l~V~   88 (90)
T d1x44a1          47 RYRIRVEGKKHILIIEGATKADAAEYSVMTTGG-----QSSAKLSVD   88 (90)
T ss_dssp             SEEEEEETTEEEEEEEEECTTTCSEEEEEETTE-----EEEEEEEEE
T ss_pred             cEEEEEeCCccEEEECccccccCEEEEEEEecc-----eEEEEEEEE
Confidence            3445543  346999999999999999999763     445566664

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.05  E-value=1.9e-05  Score=46.61  Aligned_cols=77  Identities=17%  Similarity=0.185  Sum_probs=46.3

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcEE--EEecCc----eeEEEEccCCCCCCeE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRID--MHVSSE----KHSLLVRHIKDTDFGN  119 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~~--~~~~~~----~~~l~i~~~~~~d~g~  119 (245)
                      ++|.+...+.. .+..|+..+|.|.+.|..+  ..+.|+++|..+..+....  ....+.    .+.|.+.   ..+...
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~---~~~~~~   77 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI---PSDDDI   77 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEEC---CCTTCC
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEc---CCCCCE
Confidence            46666554332 2456888999999999744  4899999998776432111  111111    1233333   345667


Q ss_pred             EEEEEEeCC
Q psy12131        120 YMCQASNNL  128 (245)
Q Consensus       120 y~C~~~n~~  128 (245)
                      |+|.+....
T Consensus        78 ytC~V~H~s   86 (100)
T d1muja1          78 YDCKVEHWG   86 (100)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEECC
Confidence            999988754

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=0.00011  Score=42.88  Aligned_cols=69  Identities=16%  Similarity=0.238  Sum_probs=45.2

Q ss_pred             cCCCeEEEEEEEee-cCCCeEEEEECCEEeccCCcEEEEecCc-----eeEEEEccCCCCCCeEEEEEEEeCCceeEE
Q psy12131         62 APDMRAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSE-----KHSLLVRHIKDTDFGNYMCQASNNLGSSQQ  133 (245)
Q Consensus        62 ~~g~~~~l~C~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  133 (245)
                      ..++.++|.|.+.| +|.+.+.|++++..+.............     .+.|.+.   ..+...|+|.+....-....
T Consensus        14 ~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~~~   88 (95)
T d1dr9a2          14 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVNQ   88 (95)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCEEE
T ss_pred             CCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCCcE
Confidence            35778899999987 6888999999998776543322222111     2344443   34567899999887544333

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=7e-06  Score=49.65  Aligned_cols=33  Identities=27%  Similarity=0.420  Sum_probs=27.9

Q ss_pred             cceEEEeecceEEEeccCCCCCEEEEEEEEcCC
Q psy12131          2 KEIELLYNRESLDLDRVTLKLAGLYQCIASNNI   34 (245)
Q Consensus         2 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   34 (245)
                      +|.....+..+|.|.+++.+|+|.|.|.+....
T Consensus        60 ~r~~~~~~~~sL~I~~v~~~D~G~Y~C~V~~~~   92 (110)
T d1ncna_          60 GRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKK   92 (110)
T ss_dssp             TSEEEETTTTEEEECSCCGGGCEEEEEEEEEEC
T ss_pred             EEEeccCCeEEEEECCCChhHCEEEEEEEEecC
Confidence            466777778889999999999999999997543

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.00  E-value=9.9e-06  Score=48.67  Aligned_cols=72  Identities=17%  Similarity=0.261  Sum_probs=50.2

Q ss_pred             cceEEecCCCeEEEEEEEeecCCCeEEEEE--CCE-E--e---------ccCCcEEEEecCceeEEEEccCCCCCCeEEE
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGT-A--I---------TLGGRIDMHVSSEKHSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~-~--~---------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  121 (245)
                      |..+.+.+|++++|.|.........+.|++  .+. +  +         ....++..........|.|.+++++|.|.|.
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Yy   85 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEE
Confidence            345667899999999987544444688987  121 1  1         1123555555556779999999999999999


Q ss_pred             EEEEeC
Q psy12131        122 CQASNN  127 (245)
Q Consensus       122 C~~~n~  127 (245)
                      |.+...
T Consensus        86 CA~~~~   91 (108)
T d1nfde1          86 CLSSYG   91 (108)
T ss_dssp             EEEEET
T ss_pred             EEeecC
Confidence            987643

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=7.4e-05  Score=45.48  Aligned_cols=70  Identities=13%  Similarity=0.191  Sum_probs=46.8

Q ss_pred             ceEEecCCCeEEEEEEEeecCCC---eEEEEE--CCEEe---------------ccCCcEEEEecCceeEEEEccCCCCC
Q psy12131         57 QWIHTAPDMRAEIICNVYANPPA---KVEWFR--DGTAI---------------TLGGRIDMHVSSEKHSLLVRHIKDTD  116 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~~~---~~~w~~--~~~~~---------------~~~~~~~~~~~~~~~~l~i~~~~~~d  116 (245)
                      ..+.+..|+.+.|.|.......+   .+.|++  .+...               ................|.|.+++.+|
T Consensus         7 ~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   86 (117)
T d1dqta_           7 SVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVD   86 (117)
T ss_dssp             SEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             CEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCcccc
Confidence            45667889999999998644333   478997  22211               00111222334456799999999999


Q ss_pred             CeEEEEEEEe
Q psy12131        117 FGNYMCQASN  126 (245)
Q Consensus       117 ~g~y~C~~~n  126 (245)
                      .|.|.|.+..
T Consensus        87 sa~YyCa~~~   96 (117)
T d1dqta_          87 TGLYLCKVEL   96 (117)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEeEEEEEec
Confidence            9999998764

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.99  E-value=4.4e-06  Score=51.33  Aligned_cols=46  Identities=13%  Similarity=0.222  Sum_probs=31.3

Q ss_pred             cceEEEe----ecceEEEeccCCCCCEEEEEEEEcCCCC-ceeeEEEEEEe
Q psy12131          2 KEIELLY----NRESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVI   47 (245)
Q Consensus         2 ~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~   47 (245)
                      +|+.+..    +..+|.|.+++.+|+|.|.|.+.+..+. .....+.|.|.
T Consensus        68 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          68 ERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             TCEEECCBGGGTBCCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             eEEEEEEECCCCEEEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            4666543    2356999999999999999999875432 14456777664

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.99  E-value=1.5e-05  Score=48.16  Aligned_cols=72  Identities=24%  Similarity=0.418  Sum_probs=48.8

Q ss_pred             cceEEecCCCeEEEEEEEeecCC--CeEEEEEC--CEEe------------ccCCcEEEE--ecCceeEEEEccCCCCCC
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPP--AKVEWFRD--GTAI------------TLGGRIDMH--VSSEKHSLLVRHIKDTDF  117 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~--~~~~w~~~--~~~~------------~~~~~~~~~--~~~~~~~l~i~~~~~~d~  117 (245)
                      |..+.+.+|++++|.|...+...  .-+.|++-  +...            ....++...  .......|.|.++..+|.
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   86 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccC
Confidence            44677889999999999865432  24889871  1110            011234332  234567999999999999


Q ss_pred             eEEEEEEEeC
Q psy12131        118 GNYMCQASNN  127 (245)
Q Consensus       118 g~y~C~~~n~  127 (245)
                      +.|.|.....
T Consensus        87 a~YyCA~~~~   96 (111)
T d1cd0a_          87 ADYYCQSYDA   96 (111)
T ss_dssp             EEEEEEEEET
T ss_pred             cEEEEeeccC
Confidence            9999986653

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.97  E-value=3.1e-05  Score=46.89  Aligned_cols=73  Identities=16%  Similarity=0.405  Sum_probs=48.9

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEE--CCEEec---------------cCCcEEE-EecCceeEEEEccCCC
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGTAIT---------------LGGRIDM-HVSSEKHSLLVRHIKD  114 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~~~~---------------~~~~~~~-~~~~~~~~l~i~~~~~  114 (245)
                      ...|..+.+.+|+.++|.|...+ ....+.||+  .+....               ...++.. ........|.|.++.+
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (113)
T d2ntsp1           3 TQTPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLEL   81 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCG
T ss_pred             EeCCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCc
Confidence            34566677889999999998653 335789997  221110               0112222 2233456899999999


Q ss_pred             CCCeEEEEEEEe
Q psy12131        115 TDFGNYMCQASN  126 (245)
Q Consensus       115 ~d~g~y~C~~~n  126 (245)
                      +|.+.|.|.+..
T Consensus        82 ~Dsa~YyCA~~~   93 (113)
T d2ntsp1          82 GDSALYLCASSL   93 (113)
T ss_dssp             GGCEEEEEEEES
T ss_pred             ccceeeeeeeeC
Confidence            999999998764

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=0.00017  Score=41.87  Aligned_cols=78  Identities=26%  Similarity=0.428  Sum_probs=45.9

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEEEEecCce--eEEEEccCCCCCCeEEEEE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKDTDFGNYMCQ  123 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~  123 (245)
                      .||.+.....   ...++.++|.|.+.|..+.  .+.|.+++..+...........+..  .......+...+...|+|.
T Consensus         2 ~PP~V~v~~~---~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~   78 (94)
T d1t7va1           2 DPPSVVVTSH---QAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCH   78 (94)
T ss_dssp             BCCEEEEEEE---ECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEE
T ss_pred             cCCEeEEecc---CCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEE
Confidence            4666655332   2357899999999996443  8999999987764333222222211  1111222334455679999


Q ss_pred             EEeCC
Q psy12131        124 ASNNL  128 (245)
Q Consensus       124 ~~n~~  128 (245)
                      +....
T Consensus        79 V~H~s   83 (94)
T d1t7va1          79 VQHSS   83 (94)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            88753

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=5e-05  Score=45.97  Aligned_cols=72  Identities=14%  Similarity=0.216  Sum_probs=48.0

Q ss_pred             ceEEecCCCeEEEEEEEeec--CCCeEEEEEC--C---EEecc------------CCcEEEEe--cCceeEEEEccCCCC
Q psy12131         57 QWIHTAPDMRAEIICNVYAN--PPAKVEWFRD--G---TAITL------------GGRIDMHV--SSEKHSLLVRHIKDT  115 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~--~~~~~~w~~~--~---~~~~~------------~~~~~~~~--~~~~~~l~i~~~~~~  115 (245)
                      ....+.+|++++|.|...+.  ....+.|++-  +   ..+..            ..++.+..  ......|+|.+++.+
T Consensus         7 ~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~   86 (113)
T d1smoa_           7 EKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVE   86 (113)
T ss_dssp             EEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcc
Confidence            34667899999999997642  3457889872  1   11110            12344432  233467999999999


Q ss_pred             CCeEEEEEEEeCC
Q psy12131        116 DFGNYMCQASNNL  128 (245)
Q Consensus       116 d~g~y~C~~~n~~  128 (245)
                      |.|.|.|.+....
T Consensus        87 Dsg~Y~Cav~~~~   99 (113)
T d1smoa_          87 DSGLYQCVIYQPP   99 (113)
T ss_dssp             GCEEEEEEECCTT
T ss_pred             cCceEEEEEECCC
Confidence            9999999876543

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=2e-05  Score=48.41  Aligned_cols=73  Identities=19%  Similarity=0.382  Sum_probs=47.7

Q ss_pred             cceEEecCCCeEEEEEEEeecC-------CCeEEEEECCEEecc-----------------CCcEEEEe--cCceeEEEE
Q psy12131         56 KQWIHTAPDMRAEIICNVYANP-------PAKVEWFRDGTAITL-----------------GGRIDMHV--SSEKHSLLV  109 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~-------~~~~~w~~~~~~~~~-----------------~~~~~~~~--~~~~~~l~i  109 (245)
                      +..+.+.+|.++.|.|......       ...+.|++....-..                 .+++.+..  .....+|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            3457788999999999985221       125788874321100                 12344332  223568999


Q ss_pred             ccCCCCCCeEEEEEEEeCC
Q psy12131        110 RHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus       110 ~~~~~~d~g~y~C~~~n~~  128 (245)
                      .+++.+|.|.|.|.+....
T Consensus        88 ~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             CSCCGGGCEEEEEEEEETT
T ss_pred             CCCChHHCEEEEEEEEeCC
Confidence            9999999999999997643

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=5.3e-06  Score=48.64  Aligned_cols=34  Identities=18%  Similarity=0.329  Sum_probs=25.9

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      +...|.|.+++.+|+|.|+|.|.|.     +.++.|.|.
T Consensus        60 ~~~~L~I~~~~~~D~G~Y~c~a~n~-----~~s~~l~V~   93 (94)
T d1pd6a_          60 AKRTLTISQCSLADDAAYQCVVGGE-----KCSTELFVK   93 (94)
T ss_dssp             TEEEEEECSCSSSSCEEEEEEETTE-----EECCEEEEE
T ss_pred             CeEEeecCCCCceecEEEEEEEeeE-----EEEEEEEEE
Confidence            3456999999999999999999763     344556554

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.93  E-value=2.7e-05  Score=47.08  Aligned_cols=73  Identities=14%  Similarity=0.302  Sum_probs=48.3

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--CE---Ee---------c----cCCcEEEE-ecCceeEEEEccCC
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GT---AI---------T----LGGRIDMH-VSSEKHSLLVRHIK  113 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~---~~---------~----~~~~~~~~-~~~~~~~l~i~~~~  113 (245)
                      ...|....+.+|+.++|.|.... ....+.||+-  +.   .+         .    ...++... .......|.|.++.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (112)
T d1kgce1           3 SQSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQ   81 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCC
T ss_pred             EECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCC
Confidence            34566777889999999998643 3457889871  11   11         0    01223222 22235689999999


Q ss_pred             CCCCeEEEEEEEe
Q psy12131        114 DTDFGNYMCQASN  126 (245)
Q Consensus       114 ~~d~g~y~C~~~n  126 (245)
                      ++|.|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (112)
T d1kgce1          82 QEDSAVYLCASSL   94 (112)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cCCCEEEEEeeeC
Confidence            9999999998764

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=3.1e-06  Score=48.29  Aligned_cols=37  Identities=19%  Similarity=0.309  Sum_probs=29.1

Q ss_pred             eecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          8 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         8 ~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      ..+..|.|.+++.+|+|.|+|.|.+..   .+..+.|.|.
T Consensus        45 ~~~~~l~i~~v~~~d~G~Y~C~a~~s~---~S~~v~l~V~   81 (82)
T d1f2qa1          45 ETNSSLNIVNAKFEDSGEYKCQHQQVN---ESEPVYLEVF   81 (82)
T ss_dssp             CCSSEEEECSCCGGGCEEEEEECTTSS---CCCCEEEEEE
T ss_pred             cccceeEECCCChhhCCcEEEEecCCC---CcccEEEEEE
Confidence            345679999999999999999998753   3556777763

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=3.8e-05  Score=46.16  Aligned_cols=69  Identities=9%  Similarity=0.137  Sum_probs=43.1

Q ss_pred             ecCCCeEEEEEEEee-cCCC--eEEEEECCEEeccCCcEEEE-ecC---ceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         61 TAPDMRAEIICNVYA-NPPA--KVEWFRDGTAITLGGRIDMH-VSS---EKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~-~~~~--~~~w~~~~~~~~~~~~~~~~-~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      +.+|+.+.|.|.+.+ .|.+  .+.|++++..+......... ..+   ..+.|.+.....++...|+|.|.+..+
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~   88 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHID   88 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSC
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcC
Confidence            568999999999975 5543  68999988776432110000 000   123566654444445589999998754

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.92  E-value=2.9e-05  Score=47.13  Aligned_cols=74  Identities=15%  Similarity=0.335  Sum_probs=48.5

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEE--CCE-E--ec---c---------CCcEEEE-ecCceeEEEEccCCC
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGT-A--IT---L---------GGRIDMH-VSSEKHSLLVRHIKD  114 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~-~--~~---~---------~~~~~~~-~~~~~~~l~i~~~~~  114 (245)
                      ...|..+.+.+|+.++|.|... .....+.||+  .+. +  +.   .         ...+... .......|.|.++..
T Consensus         3 tQsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (114)
T d1ogae1           3 TQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQK   81 (114)
T ss_dssp             ECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCS
T ss_pred             EEcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCc
Confidence            3445667788999999999975 3445799997  111 1  00   0         0111111 123356899999999


Q ss_pred             CCCeEEEEEEEeC
Q psy12131        115 TDFGNYMCQASNN  127 (245)
Q Consensus       115 ~d~g~y~C~~~n~  127 (245)
                      +|.+.|.|.+...
T Consensus        82 ~DSa~YyCa~~~~   94 (114)
T d1ogae1          82 NPTAFYLCASSSR   94 (114)
T ss_dssp             CCCEEEEEEEESS
T ss_pred             CCceeEEEeeccC
Confidence            9999999976643

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.90  E-value=3.7e-05  Score=46.38  Aligned_cols=73  Identities=16%  Similarity=0.271  Sum_probs=48.3

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEE--CCE-E--e---------c----cCCcEEEEe-cCceeEEEEccCC
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGT-A--I---------T----LGGRIDMHV-SSEKHSLLVRHIK  113 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~-~--~---------~----~~~~~~~~~-~~~~~~l~i~~~~  113 (245)
                      ...|....+.+|++++|.|...+ ....+.||+  .+. +  +         .    ...++.... ......|.|.++.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~   81 (111)
T d2esve1           3 TQFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAE   81 (111)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCC
T ss_pred             EECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcc
Confidence            34566777889999999998543 335788986  111 1  1         0    012333322 2234689999999


Q ss_pred             CCCCeEEEEEEEe
Q psy12131        114 DTDFGNYMCQASN  126 (245)
Q Consensus       114 ~~d~g~y~C~~~n  126 (245)
                      .+|.|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (111)
T d2esve1          82 LEDSGVYFCASSQ   94 (111)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cCCCceEEEeeeC
Confidence            9999999998654

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.90  E-value=0.00011  Score=44.79  Aligned_cols=74  Identities=18%  Similarity=0.371  Sum_probs=48.9

Q ss_pred             EeecceEEecCCCeEEEEEEEeecC--CCeEEEEEC--C---EEec-------------cCCcEEEEe--cCceeEEEEc
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANP--PAKVEWFRD--G---TAIT-------------LGGRIDMHV--SSEKHSLLVR  110 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~--~---~~~~-------------~~~~~~~~~--~~~~~~l~i~  110 (245)
                      ..++..+...+|+.++|.|.+.+..  ...+.|++-  +   .-+.             ...++.+..  ......|.|.
T Consensus         5 ~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~   84 (120)
T d1ypzf1           5 EQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIY   84 (120)
T ss_dssp             ECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEEC
T ss_pred             EcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccc
Confidence            3445567777899999999976542  346889871  1   1110             112333332  2345689999


Q ss_pred             cCCCCCCeEEEEEEEe
Q psy12131        111 HIKDTDFGNYMCQASN  126 (245)
Q Consensus       111 ~~~~~d~g~y~C~~~n  126 (245)
                      ++..+|.+.|.|....
T Consensus        85 ~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          85 SLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             SCCGGGCSEEEEEECC
T ss_pred             ccccccceeEEEEEcC
Confidence            9999999999997754

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=9.8e-07  Score=54.05  Aligned_cols=38  Identities=16%  Similarity=0.282  Sum_probs=33.1

Q ss_pred             ceEEEeccCCCC-CEEEEEEEEcCCCCceeeEEEEEEecC
Q psy12131         11 ESLDLDRVTLKL-AGLYQCIASNNIGESTSKNFIVNVIYP   49 (245)
Q Consensus        11 ~~L~i~~~~~~d-~G~Y~C~~~~~~~~~~~~~~~l~v~~~   49 (245)
                      +.|.|.+++..| +|.|+|.|.|..|. .++.+.|.|...
T Consensus        69 s~L~I~~v~~~D~~G~Y~C~A~N~~G~-~~~~~~L~V~~~  107 (115)
T d2crya1          69 STLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRLKEQGS  107 (115)
T ss_dssp             EEEECTTCCHHHHHSCEEEEEECSSCE-EEEEECCCCSCS
T ss_pred             EEEEEeccchhcCCeEEEEEEEECCCe-EEEEEEEEEECC
Confidence            459999999999 79999999999998 788888888643

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.89  E-value=9e-05  Score=45.27  Aligned_cols=73  Identities=18%  Similarity=0.377  Sum_probs=49.9

Q ss_pred             eecceEEecCCCeEEEEEEEeecC--CCeEEEEEC--CE---Ee---------ccCCcEEEEe--cCceeEEEEccCCCC
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYANP--PAKVEWFRD--GT---AI---------TLGGRIDMHV--SSEKHSLLVRHIKDT  115 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~--~~---~~---------~~~~~~~~~~--~~~~~~l~i~~~~~~  115 (245)
                      ..+..+.+.+|++++|.|...+..  ...+.|++-  +.   .+         ....++....  ......|.|.+++.+
T Consensus         6 ~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~   85 (120)
T d1hxma1           6 PEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSER   85 (120)
T ss_dssp             ESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGG
T ss_pred             ccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccccc
Confidence            344566788999999999987543  346899871  11   11         1113444332  334579999999999


Q ss_pred             CCeEEEEEEEe
Q psy12131        116 DFGNYMCQASN  126 (245)
Q Consensus       116 d~g~y~C~~~n  126 (245)
                      |.|.|.|....
T Consensus        86 Dsa~YyCA~~~   96 (120)
T d1hxma1          86 DEGSYYCACDT   96 (120)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CCceeecCccc
Confidence            99999998664

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.88  E-value=0.00013  Score=42.05  Aligned_cols=74  Identities=20%  Similarity=0.364  Sum_probs=44.2

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEEEEecCc-----eeEEEEccCCCCCCeEE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSE-----KHSLLVRHIKDTDFGNY  120 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~y  120 (245)
                      .||.+.....   ...+..++|.|.+.|..+.  .+.|.+++..+.... ......+.     .+.|.+.   ..+...|
T Consensus         2 ~PP~V~v~~~---~~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~-~~~~~~~dgty~~~S~l~v~---~~~~~~y   74 (91)
T d3frua1           2 EPPSMRLKAR---PGNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGN-CSTGPNGDGSFHAWSLLEVK---RGDEHHY   74 (91)
T ss_dssp             BCCEEEEEEE---ECSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCCE-EEEEECSSSCEEEEEEEEEE---TTCGGGE
T ss_pred             CCCEEEEEec---CCCCCCEEEEEEEEeEECCCCEEEEEECCEeCCccC-ccceecCCCCEeEEEEEEEC---CCCCCEE
Confidence            4666655322   2345688999999996443  899999998775432 22222211     2334443   2345678


Q ss_pred             EEEEEeCC
Q psy12131        121 MCQASNNL  128 (245)
Q Consensus       121 ~C~~~n~~  128 (245)
                      +|.+....
T Consensus        75 tC~V~H~s   82 (91)
T d3frua1          75 QCQVEHEG   82 (91)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99888753

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=3.4e-05  Score=46.46  Aligned_cols=69  Identities=16%  Similarity=0.309  Sum_probs=42.0

Q ss_pred             EEecCCCeEEEEEEEeecCC---Ce--EEEEECCE-Eecc-----------CCcE--EEEecCceeEEEEccCCCCCCeE
Q psy12131         59 IHTAPDMRAEIICNVYANPP---AK--VEWFRDGT-AITL-----------GGRI--DMHVSSEKHSLLVRHIKDTDFGN  119 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~---~~--~~w~~~~~-~~~~-----------~~~~--~~~~~~~~~~l~i~~~~~~d~g~  119 (245)
                      +.+..|+++.|.|.......   ..  +.|.++.. .+..           ..++  ..........|.|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            45678999999999864332   22  33444322 1100           0001  11112234689999999999999


Q ss_pred             EEEEEEeC
Q psy12131        120 YMCQASNN  127 (245)
Q Consensus       120 y~C~~~n~  127 (245)
                      |.|.+...
T Consensus        84 Y~C~V~~~   91 (110)
T d1ncna_          84 YQCIIHHK   91 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99998643

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=2.5e-06  Score=49.88  Aligned_cols=78  Identities=12%  Similarity=-0.079  Sum_probs=47.8

Q ss_pred             cccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceE-EEEEEEEecCCC
Q psy12131        151 RRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQY-EASVLAKNRFGW  229 (245)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y-~~~v~a~N~~G~  229 (245)
                      ....++.+.|.|.+.+.+++. + .|+++.. ...-... .      ........+.|.++...+.+ .|+|.|.|.+|.
T Consensus        13 ~v~~G~~v~l~C~~~g~P~p~-v-~W~~~~~-~~~~~~~-~------~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~   82 (92)
T d2ifga1          13 SVDVGDDVLLRCQVEGRGLEQ-A-GWILTEL-EQSATVM-K------SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGR   82 (92)
T ss_dssp             CCBTTCCEEEEEEEECSSCCC-C-CEEESCC-CSSEEEC-C------CCCSSEEEEEEESCCSTTTTCCEEECCEETTEE
T ss_pred             EEeCCCEEEEeeeccCCCCcE-E-EEEECCc-eeeeeee-e------eeeccceeEEEccccccccceEEEEEEEcCCCE
Confidence            356789999999997664432 2 2444432 1111111 1      11112366888888888776 588889999998


Q ss_pred             CCCCcceEE
Q psy12131        230 SRPSKAYVF  238 (245)
Q Consensus       230 ~~~s~~~~~  238 (245)
                      ...+..+.|
T Consensus        83 ~~~s~~l~V   91 (92)
T d2ifga1          83 AEVSVQVNV   91 (92)
T ss_dssp             CCEEECCCC
T ss_pred             EEEEEEEEE
Confidence            877665544

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=5.2e-05  Score=44.93  Aligned_cols=71  Identities=24%  Similarity=0.386  Sum_probs=44.0

Q ss_pred             CCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcE--EEEecCc----eeEEEEccCCCCCCeEEEEEEEeCCceeEE
Q psy12131         63 PDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRI--DMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNLGSSQQ  133 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~--~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  133 (245)
                      .+..+.|.|.+.+.-+  ..|.|.++|..+..+...  .....++    .+.|.|..-.......|+|.+........+
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~k   97 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNK   97 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEE
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCccEee
Confidence            4567899999988643  389999999876543211  1111111    245556544444567899999987544433

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.83  E-value=8.6e-05  Score=44.87  Aligned_cols=75  Identities=16%  Similarity=0.326  Sum_probs=48.9

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCCCeEEEEE--CCE-E--ec------------cCCcEE-EEecCceeEEEEccCC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DGT-A--IT------------LGGRID-MHVSSEKHSLLVRHIK  113 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~~-~--~~------------~~~~~~-~~~~~~~~~l~i~~~~  113 (245)
                      +...|..+.+.+|+.++|.|... .....+.||+  .+. +  +.            ....+. .........|.|.++.
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   81 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAS   81 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCc
Confidence            34456667788999999999864 3345788987  121 1  00            001122 1223345689999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy12131        114 DTDFGNYMCQASNN  127 (245)
Q Consensus       114 ~~d~g~y~C~~~n~  127 (245)
                      .+|.|.|.|.+...
T Consensus        82 ~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          82 TNQTSMYLCASSST   95 (113)
T ss_dssp             GGGCEEEEEEEECT
T ss_pred             cCCcccEEeeEccC
Confidence            99999999987643

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3.9e-05  Score=45.61  Aligned_cols=79  Identities=6%  Similarity=-0.168  Sum_probs=44.8

Q ss_pred             ccCCCeeEEEEEeCCCCC-ceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        152 RLGPDGYRLVWQVDTYSG-IIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       152 ~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      ...|..++|+|.+.+..| ..-...|+++..   ........ .     ......+.|.....++...|+|.|.|.+|..
T Consensus        16 v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~---~l~~~~~~-~-----~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~   86 (103)
T d1iama1          16 QPVGKQLTLRCQVEGGAPRAQLTVVLLRGEK---ELKREPAV-G-----EPAEVTTTVLVRRDHHGAQFSCRTELDLRPQ   86 (103)
T ss_dssp             ECTTSEEEEEEEEECCBCGGGEEEEEEETTE---EEEEEECC-T-----TTEEEEEEEECCSSCSSCEEEEEEEEECGGG
T ss_pred             EeCCCEEEEEEEecCCCCCCceEEEEccccc---cccccccc-c-----ccceEEEEEeeehhHCCCEEEEEEEeCCCCc
Confidence            456999999999966433 322233555532   11111111 1     1122456666666666666777799999987


Q ss_pred             CCCcceEEe
Q psy12131        231 RPSKAYVFA  239 (245)
Q Consensus       231 ~~s~~~~~~  239 (245)
                      ..+..+.++
T Consensus        87 ~~~~~~~~s   95 (103)
T d1iama1          87 GLELFENTS   95 (103)
T ss_dssp             TSCEEEEEC
T ss_pred             cCeEeeeEc
Confidence            665555443

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=97.82  E-value=5.8e-06  Score=47.91  Aligned_cols=41  Identities=20%  Similarity=0.212  Sum_probs=29.3

Q ss_pred             cceEEEee--cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          2 KEIELLYN--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         2 ~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      +++.+...  ...|.|.+++.+|+|.|+|.|.|..     .++.|.|.
T Consensus        45 ~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~-----~sa~l~V~   87 (89)
T d1tiua_          45 PDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK-----SAANLKVK   87 (89)
T ss_dssp             SSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB-----CCEEEEEE
T ss_pred             eeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE-----EEEEEEEE
Confidence            34555543  3569999999999999999997643     23455554

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.81  E-value=0.00025  Score=41.44  Aligned_cols=79  Identities=22%  Similarity=0.317  Sum_probs=41.5

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEE--EEec-CceeEEEEccCCCCCCeEEEEE
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRID--MHVS-SEKHSLLVRHIKDTDFGNYMCQ  123 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~--~~~~-~~~~~l~i~~~~~~d~g~y~C~  123 (245)
                      +|.+...+.. ....++..+|.|.+.|..++  .+.|.++|..+..+....  .... +.-+......+...+...|+|.
T Consensus         4 ~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~   82 (98)
T d1d5mb1           4 YPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQ   82 (98)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEE
T ss_pred             CCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEE
Confidence            4555443322 12345666899999986443  899999998875432111  1111 1112222233445566789999


Q ss_pred             EEeCC
Q psy12131        124 ASNNL  128 (245)
Q Consensus       124 ~~n~~  128 (245)
                      +....
T Consensus        83 V~H~s   87 (98)
T d1d5mb1          83 VEHPS   87 (98)
T ss_dssp             EECTT
T ss_pred             EEECC
Confidence            88754

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.81  E-value=0.00019  Score=43.90  Aligned_cols=73  Identities=16%  Similarity=0.391  Sum_probs=49.4

Q ss_pred             eecceEEecCCCeEEEEEEEeecC--CCeEEEEEC--C---EEe----------c----cCCcEEEEe--cCceeEEEEc
Q psy12131         54 VEKQWIHTAPDMRAEIICNVYANP--PAKVEWFRD--G---TAI----------T----LGGRIDMHV--SSEKHSLLVR  110 (245)
Q Consensus        54 ~~~~~~~~~~g~~~~l~C~~~~~~--~~~~~w~~~--~---~~~----------~----~~~~~~~~~--~~~~~~l~i~  110 (245)
                      .++..+...+|+.++|.|.+.|..  ...+.|++-  +   .-+          .    ...++.+..  ......|.|.
T Consensus         6 Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~   85 (123)
T d1hxmb1           6 QPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIH   85 (123)
T ss_dssp             CCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEEC
T ss_pred             CCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccc
Confidence            334456677899999999998753  346889871  1   111          0    123455543  2345689999


Q ss_pred             cCCCCCCeEEEEEEEe
Q psy12131        111 HIKDTDFGNYMCQASN  126 (245)
Q Consensus       111 ~~~~~d~g~y~C~~~n  126 (245)
                      ++.++|.+.|.|....
T Consensus        86 ~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          86 NVEKQDIATYYCALWE  101 (123)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             ccccccCcEEEEeeeC
Confidence            9999999999998654

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=0.00023  Score=41.27  Aligned_cols=77  Identities=16%  Similarity=0.347  Sum_probs=44.6

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeec-CCC-eEEEEECCEEeccCC--cEEEEecCc-e-eEEEEccCCCCCCeEEE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYAN-PPA-KVEWFRDGTAITLGG--RIDMHVSSE-K-HSLLVRHIKDTDFGNYM  121 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~w~~~~~~~~~~~--~~~~~~~~~-~-~~l~i~~~~~~d~g~y~  121 (245)
                      .||.+....    ...+..++|.|.+.|. |.. .+.|++||..+....  ......++. . .....-.+...+...|+
T Consensus         3 vpP~V~v~~----~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~yt   78 (94)
T d1de4a1           3 VPPLVKVTH----HVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYT   78 (94)
T ss_dssp             BCCEEEEEE----EECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEE
T ss_pred             CCCEEEEEE----cCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEE
Confidence            466665432    1246678999999995 443 899999998875331  112222211 1 11122233344566899


Q ss_pred             EEEEeCC
Q psy12131        122 CQASNNL  128 (245)
Q Consensus       122 C~~~n~~  128 (245)
                      |.+....
T Consensus        79 C~V~H~s   85 (94)
T d1de4a1          79 CQVEHPG   85 (94)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9998863

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.1e-05  Score=47.48  Aligned_cols=32  Identities=13%  Similarity=0.233  Sum_probs=25.0

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      ..+|.|.+++.+|+|.|.|.+.+     .+..+.|.|
T Consensus        66 ~~sL~I~~l~~~DsG~Y~C~v~~-----~~~~v~L~V   97 (97)
T d2nxyb1          66 NFPLIIKNLKIEDSDTYICEVED-----QKEEVQLLV   97 (97)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETT-----EEEEEEEEE
T ss_pred             EEEEEECCCChHHCEEEEEEEec-----CCeEEEEEC
Confidence            34699999999999999999965     244555554

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.78  E-value=0.00016  Score=43.53  Aligned_cols=73  Identities=12%  Similarity=0.220  Sum_probs=47.7

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEE--CC-EEe-----cc---------CCcEE-EEecCceeEEEEccCCC
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFR--DG-TAI-----TL---------GGRID-MHVSSEKHSLLVRHIKD  114 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~--~~-~~~-----~~---------~~~~~-~~~~~~~~~l~i~~~~~  114 (245)
                      ...|....+.+|+.++|.|.... ....+.||+  .+ .+.     ..         ..++. .........|.|.++.+
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (112)
T d2bnub1           3 TQTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAP   81 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCG
T ss_pred             EECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCH
Confidence            44566677889999999998753 345799987  22 110     00         01111 11222345899999999


Q ss_pred             CCCeEEEEEEEe
Q psy12131        115 TDFGNYMCQASN  126 (245)
Q Consensus       115 ~d~g~y~C~~~n  126 (245)
                      +|.+.|.|.+..
T Consensus        82 ~DsavYyCA~~~   93 (112)
T d2bnub1          82 SQTSVYFCASSY   93 (112)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             HHCEEEEEeecC
Confidence            999999997753

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=97.78  E-value=5.1e-06  Score=47.69  Aligned_cols=36  Identities=14%  Similarity=0.170  Sum_probs=28.4

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEe
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI   47 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~   47 (245)
                      +...|.|.+++.+|+|.|+|.+.|..   .+..+.|.|.
T Consensus        49 ~~~~l~i~~v~~~dsG~Y~C~a~ns~---~S~~v~l~V~   84 (85)
T d2fcba1          49 HTQPSYRFKANNNDSGEYTCQTGQTS---LSDPVHLTVL   84 (85)
T ss_dssp             CCSSEEEEECCGGGCEEEEEECTTSB---CCCCEEEEEE
T ss_pred             cccceEEeeccccCCcEEEEECCCCc---ccccEEEEEE
Confidence            44569999999999999999998753   3556667663

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=2.8e-05  Score=47.35  Aligned_cols=38  Identities=16%  Similarity=0.203  Sum_probs=28.7

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEEecC
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP   49 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~   49 (245)
                      .+|+|.+++.+|+|.|.|.+...... ....+.|+|.+.
T Consensus        74 ~sL~I~~l~~~DsG~Y~C~v~~~~~~-~~~~v~L~V~~~  111 (116)
T d1xeda_          74 FVVNIAQLSQDDSGRYKCGLGINSRG-LSFDVSLEVLEH  111 (116)
T ss_dssp             EEEEECSCCGGGCEEEEEEESCGGGC-CEEEEEEEEECC
T ss_pred             EEEEEhhhCcCCCEEEEEEEEcCCCC-ceEeEEEEEECC
Confidence            46999999999999999988644322 455677877654

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=4.2e-05  Score=45.63  Aligned_cols=35  Identities=14%  Similarity=0.172  Sum_probs=27.2

Q ss_pred             cceEEEe-ecceEEEeccCCCCCEEEEEEEEcCCCC
Q psy12131          2 KEIELLY-NRESLDLDRVTLKLAGLYQCIASNNIGE   36 (245)
Q Consensus         2 ~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~~~~~~   36 (245)
                      +|+.+.. +..+|.|.+++.+|+|.|.|.+.+..+.
T Consensus        55 ~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~V~~~~~~   90 (105)
T d1dr9a1          55 NRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKD   90 (105)
T ss_dssp             TTEEEESTTTTEEEECSCCGGGCEEEEEEEEECCTT
T ss_pred             eeeeeccCCcEEEEECcCChHHCeEEEEEEEeCCCC
Confidence            4556554 3567999999999999999999865443

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=9.6e-05  Score=45.03  Aligned_cols=71  Identities=17%  Similarity=0.299  Sum_probs=46.2

Q ss_pred             cceEEecCCCeEEEEEEEeecCCC---eEEEEEC--CE--E-ec----cC--------CcEEEEecCceeEEEEccCCCC
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPPA---KVEWFRD--GT--A-IT----LG--------GRIDMHVSSEKHSLLVRHIKDT  115 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~~---~~~w~~~--~~--~-~~----~~--------~~~~~~~~~~~~~l~i~~~~~~  115 (245)
                      |..+.+.+|+.++|.|.......+   .+.|++-  +.  . +.    ..        .............|.|.+++.+
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM   85 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence            345667889999999998644333   5889972  21  1 10    00        0011122334568999999999


Q ss_pred             CCeEEEEEEEe
Q psy12131        116 DFGNYMCQASN  126 (245)
Q Consensus       116 d~g~y~C~~~n  126 (245)
                      |.|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (118)
T d1i8lc_          86 DTGLYICKVEL   96 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEEeEec
Confidence            99999998765

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.76  E-value=0.00014  Score=42.54  Aligned_cols=76  Identities=17%  Similarity=0.269  Sum_probs=45.2

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcE-EEEecC-c----eeEEEEccCCCCCCeEE
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRI-DMHVSS-E----KHSLLVRHIKDTDFGNY  120 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~-~~~~~~-~----~~~l~i~~~~~~d~g~y  120 (245)
                      ||.+...+.. ....++.+.|.|.+.|..+  ..+.|.+++..+..+... ....++ .    .+.|.+   ...+...|
T Consensus         3 PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v---~~~~~~~y   78 (98)
T d1hdmb1           3 PPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLAL---TPSYGDTY   78 (98)
T ss_dssp             CCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEE---CCCTTCCE
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEc---CCCCCCEE
Confidence            5665544321 2445778899999999644  489999999887544221 111111 1    123333   34455579


Q ss_pred             EEEEEeCC
Q psy12131        121 MCQASNNL  128 (245)
Q Consensus       121 ~C~~~n~~  128 (245)
                      +|.+....
T Consensus        79 tC~V~H~s   86 (98)
T d1hdmb1          79 TCVVEHIG   86 (98)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99998864

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=0.00065  Score=37.44  Aligned_cols=73  Identities=21%  Similarity=0.285  Sum_probs=50.0

Q ss_pred             eEEecCCCeEEEEEEEee-cCCCeEEEEE-CCE---EeccCCcEE--EEecC--ceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         58 WIHTAPDMRAEIICNVYA-NPPAKVEWFR-DGT---AITLGGRID--MHVSS--EKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~-~~~~~~~w~~-~~~---~~~~~~~~~--~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ...+..|+.+.|.|.+.- ...|.++|-+ ++.   ++..++...  ....+  ....|.+..+.++|.|.|+|.|.-..
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s   91 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS   91 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCCh
Confidence            456788999999999975 3568999987 442   333222211  12222  23467788999999999999998766


Q ss_pred             ce
Q psy12131        129 GS  130 (245)
Q Consensus       129 g~  130 (245)
                      +-
T Consensus        92 ~v   93 (104)
T d1xaua_          92 QV   93 (104)
T ss_dssp             EE
T ss_pred             hh
Confidence            54

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.75  E-value=0.00027  Score=41.55  Aligned_cols=77  Identities=22%  Similarity=0.301  Sum_probs=43.7

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcEE--EEecCc----eeEEEEccCCCCCCeE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRID--MHVSSE----KHSLLVRHIKDTDFGN  119 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~~--~~~~~~----~~~l~i~~~~~~d~g~  119 (245)
                      .+|.+...+.. ....++..+|.|.+.|..+  ..+.|.++|..+..+....  ....+.    .+.|.+..   .+...
T Consensus         4 v~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~   79 (101)
T d1fnga1           4 VAPEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDDF   79 (101)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTCC
T ss_pred             cCCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCCE
Confidence            35665543322 1345778889999998643  3899999998876432110  111111    22344332   33456


Q ss_pred             EEEEEEeCC
Q psy12131        120 YMCQASNNL  128 (245)
Q Consensus       120 y~C~~~n~~  128 (245)
                      |+|.+....
T Consensus        80 ytC~V~H~s   88 (101)
T d1fnga1          80 YDCEVDHWG   88 (101)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEECC
Confidence            888887753

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=1e-05  Score=47.47  Aligned_cols=75  Identities=15%  Similarity=0.164  Sum_probs=49.7

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      +|.+...|.. .+..|++|+|.|... .+...+.+++++......... ....+....+.|.++...|.|.|+|....
T Consensus         4 kP~Lsa~Ps~-~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~-~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           4 KPTLWAEPGS-VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRI-PQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTS-CHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEeECCC-ccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEc-cCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            5666666653 367999999999964 344577888877532210000 00111345799999999999999998754

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1.1e-05  Score=48.46  Aligned_cols=34  Identities=15%  Similarity=0.318  Sum_probs=29.5

Q ss_pred             ceEEEeccCCCCCE-EEEEEEEcCCCCceeeEEEEE
Q psy12131         11 ESLDLDRVTLKLAG-LYQCIASNNIGESTSKNFIVN   45 (245)
Q Consensus        11 ~~L~i~~~~~~d~G-~Y~C~~~~~~~~~~~~~~~l~   45 (245)
                      +.|.|.+++.+|.| .|+|.|.|..|. .++.+.|.
T Consensus        70 ~~L~I~~v~~~D~g~~Y~C~A~N~~G~-~~~~i~L~  104 (107)
T d1iray3          70 TVLNISEIESRFYKHPFTCFAKNTHGI-DAAYIQLI  104 (107)
T ss_dssp             EEEEESSCCGGGGSSCEEEEEECSSCE-EEEEEEEE
T ss_pred             EEEEEeecchHHCCcEEEEEEEeCCCe-EEEEEEEE
Confidence            46999999999999 599999999997 67777665

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.00019  Score=42.56  Aligned_cols=71  Identities=15%  Similarity=0.282  Sum_probs=44.5

Q ss_pred             CCCeEEEEEEEeec-CCC-eEEEEECCEEeccCCcEEE-EecCc----eeEEEEccCCCCCCeEEEEEEEeCCceeEE
Q psy12131         63 PDMRAEIICNVYAN-PPA-KVEWFRDGTAITLGGRIDM-HVSSE----KHSLLVRHIKDTDFGNYMCQASNNLGSSQQ  133 (245)
Q Consensus        63 ~g~~~~l~C~~~~~-~~~-~~~w~~~~~~~~~~~~~~~-~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g~~~~  133 (245)
                      .+..+.|.|.+.+. |.. .+.|.++|..+........ ...+.    .+.|.|..-.......|+|.+........+
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t~~~   97 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFED   97 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEE
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEeEEe
Confidence            45678999999985 433 7999999988765432221 11111    245555544333456799999997654433

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.69  E-value=0.00029  Score=41.25  Aligned_cols=77  Identities=21%  Similarity=0.253  Sum_probs=44.9

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcEE--EEecCc----eeEEEEccCCCCCCeE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRID--MHVSSE----KHSLLVRHIKDTDFGN  119 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~~--~~~~~~----~~~l~i~~~~~~d~g~  119 (245)
                      .+|.+...+.. ....++..+|.|.+.|.-+  ..+.|.++|..+..+....  ....+.    .+.|.+.   ..+...
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~---~~~~~~   79 (99)
T d1uvqa1           4 EVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL---PSADEI   79 (99)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEC---CCTTCC
T ss_pred             cCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEc---CCCCCE
Confidence            35655543222 2346778899999999744  3799999998876432111  111111    1233333   344557


Q ss_pred             EEEEEEeCC
Q psy12131        120 YMCQASNNL  128 (245)
Q Consensus       120 y~C~~~n~~  128 (245)
                      |+|.+....
T Consensus        80 ytC~V~H~s   88 (99)
T d1uvqa1          80 YDCKVEHWG   88 (99)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEeCC
Confidence            999988753

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=2.8e-05  Score=46.13  Aligned_cols=84  Identities=17%  Similarity=0.272  Sum_probs=47.4

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEE--EEecCc----eeEEEEccCCCCCCeEE
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRID--MHVSSE----KHSLLVRHIKDTDFGNY  120 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~--~~~~~~----~~~l~i~~~~~~d~g~y  120 (245)
                      +|.+...+.......++.+.|.|.+.+..+.  .+.|.++|..+..+....  ....++    .+.|.|..-.......|
T Consensus         5 ~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~y   84 (102)
T d1rzfl2           5 APSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSY   84 (102)
T ss_dssp             CCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCE
T ss_pred             CCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEE
Confidence            4555443322222235678999999985433  799999998776432111  111111    23455544332234579


Q ss_pred             EEEEEeCCceeE
Q psy12131        121 MCQASNNLGSSQ  132 (245)
Q Consensus       121 ~C~~~n~~g~~~  132 (245)
                      +|.+........
T Consensus        85 tC~V~H~~~~~~   96 (102)
T d1rzfl2          85 SCQVTHEGSTVE   96 (102)
T ss_dssp             EEEEEETTEEEE
T ss_pred             EEEEEECCccEE
Confidence            999998754433

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.69  E-value=6.6e-05  Score=45.32  Aligned_cols=75  Identities=15%  Similarity=0.389  Sum_probs=48.2

Q ss_pred             EeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--CEE---ec---c---------CCcEEE-EecCceeEEEEccCCC
Q psy12131         53 SVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GTA---IT---L---------GGRIDM-HVSSEKHSLLVRHIKD  114 (245)
Q Consensus        53 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~~---~~---~---------~~~~~~-~~~~~~~~l~i~~~~~  114 (245)
                      ...|....+.+|+.++|.|.... ....+.||+-  +..   +.   .         ...+.. ........|.|..+.+
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   80 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARP   80 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCT
T ss_pred             EECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccc
Confidence            34566677889999999999642 3457899972  111   10   0         011111 1122346799999999


Q ss_pred             CCCeEEEEEEEeCC
Q psy12131        115 TDFGNYMCQASNNL  128 (245)
Q Consensus       115 ~d~g~y~C~~~n~~  128 (245)
                      +|.|.|.|.+....
T Consensus        81 ~Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          81 SHTSQYLCASSENI   94 (112)
T ss_dssp             TTCSEEEEEEECSS
T ss_pred             cccccEEEEEecCC
Confidence            99999999876543

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.68  E-value=6.1e-05  Score=45.54  Aligned_cols=76  Identities=17%  Similarity=0.317  Sum_probs=49.6

Q ss_pred             eEEeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--CE---Ee---c---------cCCcEEEE-ecCceeEEEEccC
Q psy12131         51 EVSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GT---AI---T---------LGGRIDMH-VSSEKHSLLVRHI  112 (245)
Q Consensus        51 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~---~~---~---------~~~~~~~~-~~~~~~~l~i~~~  112 (245)
                      .+...|..+.+.+|+.++|.|.... ....+.||+-  +.   -+   .         ...++... .......|.|.++
T Consensus         3 ~VtQ~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (113)
T d1nfdb1           3 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL   81 (113)
T ss_dssp             SCEEECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSC
T ss_pred             CEEEcCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEeccc
Confidence            3455677778889999999998643 3357899872  11   11   0         01122221 2233468999999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy12131        113 KDTDFGNYMCQASNN  127 (245)
Q Consensus       113 ~~~d~g~y~C~~~n~  127 (245)
                      ..+|.|.|.|.+...
T Consensus        82 ~~~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          82 ELEDSAMYFCASSLR   96 (113)
T ss_dssp             CGGGCEEECEEEESS
T ss_pred             CcCCceeEEEEeecC
Confidence            999999999986643

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=5.1e-05  Score=45.21  Aligned_cols=68  Identities=12%  Similarity=0.251  Sum_probs=42.6

Q ss_pred             cCCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcEE---EEecCc----eeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         62 APDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRID---MHVSSE----KHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        62 ~~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~~---~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      ..++.++|.|.+.+..+  ..+.|.+++..+.......   ....++    .+.|.|..-.......|+|.+.....
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTS
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCC
Confidence            35678999999988533  4899999998875432111   111111    23555554443455689999998643

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.65  E-value=7.2e-05  Score=45.42  Aligned_cols=73  Identities=18%  Similarity=0.275  Sum_probs=47.1

Q ss_pred             cceEEecCCCeEEEEEEEeec---CC---CeEEEEECCE----Ee-----------ccCCcEEEEe--cCceeEEEEccC
Q psy12131         56 KQWIHTAPDMRAEIICNVYAN---PP---AKVEWFRDGT----AI-----------TLGGRIDMHV--SSEKHSLLVRHI  112 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~---~~---~~~~w~~~~~----~~-----------~~~~~~~~~~--~~~~~~l~i~~~  112 (245)
                      |..+.+.+|..|.|.|.+...   +.   ..+.|++...    .+           ....++.+..  .....+|.|.++
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   86 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence            446778899999999998631   11   2466776321    11           0122333332  224567999999


Q ss_pred             CCCCCeEEEEEEEeCC
Q psy12131        113 KDTDFGNYMCQASNNL  128 (245)
Q Consensus       113 ~~~d~g~y~C~~~n~~  128 (245)
                      +.+|.|.|.|.+....
T Consensus        87 ~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          87 KPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CGGGCEEEEEEEECC-
T ss_pred             ChhHCEEEEEEEEeCC
Confidence            9999999999997643

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.61  E-value=0.00059  Score=40.68  Aligned_cols=72  Identities=14%  Similarity=0.240  Sum_probs=48.9

Q ss_pred             ceEEecCCCeEEEEEEEeec--CCCeEEEEEC--CE----Eecc-----------CCcEEEEec--CceeEEEEccCCCC
Q psy12131         57 QWIHTAPDMRAEIICNVYAN--PPAKVEWFRD--GT----AITL-----------GGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~--~~~~~~w~~~--~~----~~~~-----------~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      +...+.+|++++|.|...+.  ..-.+.|++-  +.    .+..           .+++.+..+  .....|+|.+++.+
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e   82 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT   82 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence            34567899999999998753  3456889872  21    1110           124444432  34567999999999


Q ss_pred             CCeEEEEEEEeCC
Q psy12131        116 DFGNYMCQASNNL  128 (245)
Q Consensus       116 d~g~y~C~~~n~~  128 (245)
                      |.|.|.|......
T Consensus        83 Dsa~YyCa~~~~~   95 (110)
T d1u9ka_          83 DSGLYRCVIYHPP   95 (110)
T ss_dssp             GCEEEEEEEECTT
T ss_pred             CCEEEEEEEeCCC
Confidence            9999999986543

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.0011  Score=36.04  Aligned_cols=58  Identities=16%  Similarity=0.380  Sum_probs=41.6

Q ss_pred             cCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEe
Q psy12131         62 APDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN  126 (245)
Q Consensus        62 ~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n  126 (245)
                      ..|..+.|.|+....+.+  --.|.+++..+..+...     .....+.|..  .++.|.|.|....
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~-----~~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC-----CCceEEEEec--CCCCceEEEEEcC
Confidence            357788999999765543  57899999988865422     1234566664  6689999999764

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00054  Score=40.66  Aligned_cols=77  Identities=16%  Similarity=0.011  Sum_probs=38.9

Q ss_pred             cccCCCeeEEEEEeCCCC--CceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCC
Q psy12131        151 RRLGPDGYRLVWQVDTYS--GIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFG  228 (245)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G  228 (245)
                      ....|..++|+|.+.+..  |...+ .|+++..   ....-. ..............+.+.....++...|+|.|.|.+|
T Consensus        13 ~v~~G~~v~l~C~v~g~~p~p~~~i-~W~~~~~---~i~~~~-~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~   87 (106)
T d1zxqa1          13 LVAVGKSFTIECRVPTVEPLDSLTL-FLFRGNE---TLHYET-FGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLM   87 (106)
T ss_dssp             EECTTSEEEEEEEECSCBCGGGEEE-EEEETTE---EEEEEE-CCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECG
T ss_pred             EEeCCCEEEEEEEEeCcccCCCceE-EEEcCCE---Eeeecc-cceEeecccceeEEEEEeeehhcCCcEEEEEEEecCC
Confidence            356799999999996642  32222 2555432   111100 0000001111224455555544555566666999998


Q ss_pred             CCCC
Q psy12131        229 WSRP  232 (245)
Q Consensus       229 ~~~~  232 (245)
                      ....
T Consensus        88 ~~~~   91 (106)
T d1zxqa1          88 SRGG   91 (106)
T ss_dssp             GGTC
T ss_pred             CCCC
Confidence            6544

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.59  E-value=0.00044  Score=39.56  Aligned_cols=74  Identities=16%  Similarity=0.294  Sum_probs=43.4

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEE--EEecCc----eeEEEEccCCCCCCeE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRID--MHVSSE----KHSLLVRHIKDTDFGN  119 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~--~~~~~~----~~~l~i~~~~~~d~g~  119 (245)
                      +||.+.....   ...++.+.|.|.+.|..+.  .+.|.++|..+..+....  ....+.    .+.|.+..   .+...
T Consensus         2 ~pP~v~v~~~---~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~---~~~~~   75 (89)
T d2mhaa1           2 DSPKAHVTHH---SRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPL---GKEQY   75 (89)
T ss_dssp             BCCEEEECCE---ESCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEES---STTTT
T ss_pred             CCCEeEEEcc---CCCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecC---cCCCE
Confidence            3566554321   2346789999999986554  789999998876543221  111111    23444442   23346


Q ss_pred             EEEEEEeC
Q psy12131        120 YMCQASNN  127 (245)
Q Consensus       120 y~C~~~n~  127 (245)
                      |+|.+...
T Consensus        76 ytC~V~H~   83 (89)
T d2mhaa1          76 YTCHVYHQ   83 (89)
T ss_dssp             CEEEEECS
T ss_pred             EEEEEEEC
Confidence            89988765

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.58  E-value=0.0018  Score=37.98  Aligned_cols=65  Identities=12%  Similarity=0.124  Sum_probs=41.4

Q ss_pred             ecCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEEEEec-Cc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         61 TAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVS-SE----KHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~-~~----~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +..|+..+|.|.+.|..+.  .+.|.+++..+........... +.    .+.|.+   ...+...|+|.+....
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~~   86 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNF---TPEPSDIFSCIVTHEP   86 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEE---CCCTTCCEEEEEEETT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEE---ecCCCCEEEEEEEeCC
Confidence            3467888999999996443  7999999987654333222222 22    123333   3345557999999864

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00058  Score=39.59  Aligned_cols=75  Identities=21%  Similarity=0.341  Sum_probs=43.1

Q ss_pred             cCCeEEeecceEEecCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEE--EEecCc----eeEEEEccCCCCCCeE
Q psy12131         48 YPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRID--MHVSSE----KHSLLVRHIKDTDFGN  119 (245)
Q Consensus        48 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~--~~~~~~----~~~l~i~~~~~~d~g~  119 (245)
                      +||.+......   ..+..+.|.|.+.|..+.  .++|.++|..+.......  ....+.    .+.|.+   ...+...
T Consensus         2 ~PP~v~v~~~~---~~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v---~~~~~~~   75 (95)
T d1k5na1           2 DPPKTHVTHHP---ISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVV---PSGEEQR   75 (95)
T ss_dssp             BCCEEEEEEEE---EETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEE---ETTCGGG
T ss_pred             cCCccEEEecc---CCCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEE---EcCCCCE
Confidence            45665543221   135678999999997554  789999998876543211  111111    122333   2334457


Q ss_pred             EEEEEEeCC
Q psy12131        120 YMCQASNNL  128 (245)
Q Consensus       120 y~C~~~n~~  128 (245)
                      |+|.+....
T Consensus        76 ytC~V~H~~   84 (95)
T d1k5na1          76 YTCHVQHEG   84 (95)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEECc
Confidence            888888753

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.56  E-value=0.00025  Score=42.25  Aligned_cols=67  Identities=18%  Similarity=0.299  Sum_probs=41.0

Q ss_pred             CCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcEEEE---ecCc----eeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         63 PDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRIDMH---VSSE----KHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~---~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      .+..+.|.|.+.+..+  ..+.|.++|..+.........   ..++    .+.|.|..-.......|+|.+.....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~   94 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS   94 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCC
Confidence            4678899999988543  389999999876543211110   1111    23455554433345689999997653

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00079  Score=38.99  Aligned_cols=79  Identities=15%  Similarity=0.100  Sum_probs=51.5

Q ss_pred             cccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        151 RRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      .+..|..|+|.|.....  ...|.++ ++..    .........   ........|.|..+.+.+.+.|+|...+..+.+
T Consensus        14 ~V~~G~~VTL~C~~~~~--~~~f~L~-k~g~----~~~~~~~~~---~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S   83 (95)
T d1olla1          14 MVPKEKQVTICCQGNYG--AVEYQLH-FEGS----LFAVDRPKP---PERINKVKFYIPDMNSRMAGQYSCIYRVGELWS   83 (95)
T ss_dssp             EEETTCCEEEEEECCTT--CCEEEEE-ETTE----EEEEECCSS---CTTCCEEEEEESSCCGGGCEEEEEEEEETTEEC
T ss_pred             cccCCCcEEEEEecCCC--ccEEEEE-ECCC----CcceeEEcc---CCCccEEEEEEeeeecCCCceEEEEeCCCCCcc
Confidence            35679999999997433  2245433 3321    111111111   011123679999999999999999999999999


Q ss_pred             CCCcceEEe
Q psy12131        231 RPSKAYVFA  239 (245)
Q Consensus       231 ~~s~~~~~~  239 (245)
                      .+|+.+.+.
T Consensus        84 ~~Sd~leL~   92 (95)
T d1olla1          84 EPSNLLDLV   92 (95)
T ss_dssp             CCCCCEEEE
T ss_pred             CCCCCEEEE
Confidence            999988754

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.52  E-value=0.001  Score=38.67  Aligned_cols=79  Identities=20%  Similarity=0.338  Sum_probs=39.7

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcEE--EEecCce-eEEEEccCCCCCCeEEEEE
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRID--MHVSSEK-HSLLVRHIKDTDFGNYMCQ  123 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~~--~~~~~~~-~~l~i~~~~~~d~g~y~C~  123 (245)
                      +|.+...+... ...++..+|.|.+.|..+  ..+.|.+++..+..+....  ....+.. +....-.+...+...|+|.
T Consensus         2 ~P~V~v~p~~~-~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~   80 (97)
T d1uvqb1           2 EPTVTISPSRT-EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCH   80 (97)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEE
T ss_pred             CCEEEEecCCc-ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEE
Confidence            45554433222 234667789999998654  3899999998765432111  1111111 1111222344556688998


Q ss_pred             EEeCC
Q psy12131        124 ASNNL  128 (245)
Q Consensus       124 ~~n~~  128 (245)
                      +....
T Consensus        81 V~H~s   85 (97)
T d1uvqb1          81 VEHPS   85 (97)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            88753

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.51  E-value=0.00077  Score=40.40  Aligned_cols=74  Identities=9%  Similarity=0.198  Sum_probs=48.2

Q ss_pred             EEeecceEEecCCCeEEEEEEEeecCCCeEEEEEC--CEEe---c----c---------CCcEEEEecCceeEEEEccCC
Q psy12131         52 VSVEKQWIHTAPDMRAEIICNVYANPPAKVEWFRD--GTAI---T----L---------GGRIDMHVSSEKHSLLVRHIK  113 (245)
Q Consensus        52 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~~~---~----~---------~~~~~~~~~~~~~~l~i~~~~  113 (245)
                      +...|....+.+|+.++|.|.........+.||+-  +...   .    .         ..++.... .....|.|....
T Consensus         4 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~-~~~~~l~l~~~~   82 (112)
T d1fo0b_           4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATR-VTDTELRLQVAN   82 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEE-EETTEEEEEEES
T ss_pred             EEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceecccccccccccccccccccc-ccccEEEEecCC
Confidence            44556677788999999999987655568999972  2111   0    0         01122111 122467888888


Q ss_pred             CCCCeEEEEEEEe
Q psy12131        114 DTDFGNYMCQASN  126 (245)
Q Consensus       114 ~~d~g~y~C~~~n  126 (245)
                      .+|.+.|.|....
T Consensus        83 ~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          83 MSQGRTLYCTCSA   95 (112)
T ss_dssp             CCSCEEEEEEEES
T ss_pred             ccCCccEEEEEec
Confidence            9999999998653

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.50  E-value=9.9e-05  Score=44.41  Aligned_cols=32  Identities=22%  Similarity=0.210  Sum_probs=25.8

Q ss_pred             cceEEEeccCCCCCE---EEEEEEEcCCCCceeeEE
Q psy12131         10 RESLDLDRVTLKLAG---LYQCIASNNIGESTSKNF   42 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G---~Y~C~~~~~~~~~~~~~~   42 (245)
                      ..+|.|.+++..|+|   .|+|.|.|..|. ....+
T Consensus        62 ~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~-~~~~~   96 (111)
T d1biha2          62 DGNLYFTIVTKEDVSDIYKYVCTAKNAAVD-EEVVL   96 (111)
T ss_dssp             TSCEEEEEECGGGCCSSEEEEEEEECTTCS-SCEEE
T ss_pred             ccccEEeeeEeeccCCceEEEEEEEeCCCC-ceEEE
Confidence            456999999999877   799999999887 34433

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00022  Score=42.63  Aligned_cols=36  Identities=19%  Similarity=0.244  Sum_probs=25.6

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCCCc--eeeEEEEEE
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIGES--TSKNFIVNV   46 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v   46 (245)
                      .+|+|.+++.+|+|.|.|.+.......  ....+.|.|
T Consensus        70 ~~L~I~~l~~~DsG~Y~C~v~~~~~~~~~~~~~~~l~V  107 (108)
T d1hkfa_          70 FTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLVV  107 (108)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTTCCEEEEEEEEEEE
T ss_pred             EEEEEhhhCCCCCEEEEEEEecCCCCcEEEeeEEEEEE
Confidence            459999999999999999988544332  233444444

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00016  Score=40.98  Aligned_cols=44  Identities=16%  Similarity=0.271  Sum_probs=36.5

Q ss_pred             ceEEEeecceEEEeccCCCCCEEEEEEEEcCCCCc-eeeEEEEEEe
Q psy12131          3 EIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVI   47 (245)
Q Consensus         3 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~   47 (245)
                      ...++.+++ |.|..+.++|+|.|...+.+..|.. ...++.|.|.
T Consensus        56 ~y~i~~nGt-LkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~  100 (101)
T d1hnfa1          56 TYKLFKNGT-LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  100 (101)
T ss_dssp             TEEECTTSC-EEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             eEEEccCCc-EEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence            456776665 9999999999999999999998885 5667777764

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00089  Score=40.55  Aligned_cols=66  Identities=11%  Similarity=0.173  Sum_probs=41.2

Q ss_pred             ecCCCeEEEEEEEeecCCC---eEEEEEC--CE-E-e------------ccCCcEE--EEecCceeEEEEccCCCCCCeE
Q psy12131         61 TAPDMRAEIICNVYANPPA---KVEWFRD--GT-A-I------------TLGGRID--MHVSSEKHSLLVRHIKDTDFGN  119 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~~~~~---~~~w~~~--~~-~-~------------~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~  119 (245)
                      +..|+.++|.|...+....   .+.|++.  +. + +            ....++.  .........|.|.+++.+|.|.
T Consensus        12 v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsav   91 (118)
T d1yjdc1          12 VAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDI   91 (118)
T ss_dssp             ECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCEE
T ss_pred             EeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCeE
Confidence            5578899999998654332   2345542  11 1 1            0111222  2233445689999999999999


Q ss_pred             EEEEEEe
Q psy12131        120 YMCQASN  126 (245)
Q Consensus       120 y~C~~~n  126 (245)
                      |.|.+..
T Consensus        92 YyCa~~~   98 (118)
T d1yjdc1          92 YFCKIEV   98 (118)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            9998764

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.44  E-value=0.00076  Score=40.64  Aligned_cols=67  Identities=19%  Similarity=0.446  Sum_probs=45.2

Q ss_pred             EecCCCeEEEEEEEeecCC----CeEEEEEC--CEE---ec-------------cCCcEEEEec--CceeEEEEccCCCC
Q psy12131         60 HTAPDMRAEIICNVYANPP----AKVEWFRD--GTA---IT-------------LGGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~----~~~~w~~~--~~~---~~-------------~~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      .+.+|+.+.|.|.+.|...    ..+.|++-  +..   +.             ...++.+..+  .....|+|.+++.+
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~e   90 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPV   90 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGG
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeec
Confidence            4678999999999887532    35789861  111   10             1235555432  23467999999999


Q ss_pred             CCeEEEEEEEe
Q psy12131        116 DFGNYMCQASN  126 (245)
Q Consensus       116 d~g~y~C~~~n  126 (245)
                      |.+.|.|....
T Consensus        91 DsAvYyCAr~~  101 (120)
T d2agjh1          91 DTATYYCARTS  101 (120)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEeeEecC
Confidence            99999997543

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.42  E-value=0.00093  Score=39.83  Aligned_cols=69  Identities=17%  Similarity=0.421  Sum_probs=46.4

Q ss_pred             EEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------e-----------ccCCcEEEEec--CceeEEEEccCCCC
Q psy12131         59 IHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------I-----------TLGGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~-----------~~~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      ..+.+|+.+.|.|.+.|....  .+.|++  -+..      +           ....++.+..+  .....|+|++++.+
T Consensus        10 ~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~e   89 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSD   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcC
Confidence            446789999999999876433  467776  1111      1           11245555442  33457999999999


Q ss_pred             CCeEEEEEEEeC
Q psy12131        116 DFGNYMCQASNN  127 (245)
Q Consensus       116 d~g~y~C~~~n~  127 (245)
                      |.+.|.|.....
T Consensus        90 DtAvYYCA~~~~  101 (117)
T d1iqdb1          90 DTAVYYCAVPDP  101 (117)
T ss_dssp             GCEEEEEEECSS
T ss_pred             cceEEEEeEcCC
Confidence            999999986543

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00027  Score=41.46  Aligned_cols=81  Identities=9%  Similarity=-0.117  Sum_probs=50.9

Q ss_pred             cccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        151 RRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       151 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      .+..|+.|+|.|.....  ...|.+.. +..  ..+........   ........|.|..+...+.+.|+|...|..+.+
T Consensus        17 ~V~~G~~VTL~C~~~~~--~~~f~l~k-~g~--~~~~~~~~~~~---~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S   88 (99)
T d1ucta1          17 VIPLDGSVKIQCQAIRE--AYLTQLMI-IKN--STYREIGRRLK---FWNETDPEFVIDHMDANKAGRYQCQYRIGHYRF   88 (99)
T ss_dssp             EEETTCCEEEEECCCTT--CSEEEEEE-EET--TEEEECSEECC-------CCCEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred             ceeCCCeEEEEEcCCCC--CcEEEEEE-CCC--cCceecccccc---CCCCceEEEEecCCCHHHCceEEEEEECCCccc
Confidence            35678999999987433  33555443 321  11111111000   000112578999999999999999999998888


Q ss_pred             CCCcceEEe
Q psy12131        231 RPSKAYVFA  239 (245)
Q Consensus       231 ~~s~~~~~~  239 (245)
                      .+|+.+++.
T Consensus        89 ~~Sdpl~L~   97 (99)
T d1ucta1          89 RYSDTLELV   97 (99)
T ss_dssp             EECCCEEEE
T ss_pred             CCCCCEEEE
Confidence            899988764

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.41  E-value=7.6e-06  Score=48.04  Aligned_cols=71  Identities=21%  Similarity=0.531  Sum_probs=46.3

Q ss_pred             EEecCCCeEEEEEEEeecCCCeEEEEEC--CEEe------------ccCCcEEEEe--cCceeEEEEccCCCCCCeEEEE
Q psy12131         59 IHTAPDMRAEIICNVYANPPAKVEWFRD--GTAI------------TLGGRIDMHV--SSEKHSLLVRHIKDTDFGNYMC  122 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~~~~w~~~--~~~~------------~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C  122 (245)
                      +.+.+|+.++|.|.... ....+.|++-  +...            ....++.+..  ......|.|.+++.+|.|.|.|
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            35778999999998753 3347899872  2111            0112232221  2234579999999999999999


Q ss_pred             EEEeCCce
Q psy12131        123 QASNNLGS  130 (245)
Q Consensus       123 ~~~n~~g~  130 (245)
                      .+....|.
T Consensus        82 A~~~~~g~   89 (96)
T d1ymmd1          82 ATDTTSGT   89 (96)
T ss_dssp             EEEETTSC
T ss_pred             eEecCCCC
Confidence            88765543

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=0.0002  Score=42.18  Aligned_cols=68  Identities=15%  Similarity=0.085  Sum_probs=40.5

Q ss_pred             cCCCeEEEEEEEeec-CC-CeEEEEECCEEeccCCcEEEEecCc---eeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         62 APDMRAEIICNVYAN-PP-AKVEWFRDGTAITLGGRIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        62 ~~g~~~~l~C~~~~~-~~-~~~~w~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      ..+..+.|.|.+.|. |. ..+.|.+++.............++.   .+.|.|..-.. ..+.|+|.+......
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~   90 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSS   90 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGT
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCC
Confidence            457899999999985 33 3899987664321111111112221   34566654443 457899999986543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.40  E-value=0.00085  Score=40.24  Aligned_cols=65  Identities=26%  Similarity=0.524  Sum_probs=45.2

Q ss_pred             EecCCCeEEEEEEEeecCCC--eEEEEEC--CEE------ec----------cCCcEEEEe--cCceeEEEEccCCCCCC
Q psy12131         60 HTAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT----------LGGRIDMHV--SSEKHSLLVRHIKDTDF  117 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~~--~~~w~~~--~~~------~~----------~~~~~~~~~--~~~~~~l~i~~~~~~d~  117 (245)
                      .+.+|+.+.|.|.+.|....  .+.|++-  +..      +.          ...++.+..  ......|+|.+++.+|.
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDt   90 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADT   90 (120)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccccc
Confidence            46789999999999986543  5778761  111      11          124566554  33345799999999999


Q ss_pred             eEEEEEE
Q psy12131        118 GNYMCQA  124 (245)
Q Consensus       118 g~y~C~~  124 (245)
                      +.|.|..
T Consensus        91 A~YYCAr   97 (120)
T d1dn0b1          91 AVYYCAR   97 (120)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEe
Confidence            9999953

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.40  E-value=0.0016  Score=38.86  Aligned_cols=70  Identities=19%  Similarity=0.363  Sum_probs=47.3

Q ss_pred             ceEEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ec-----------cCCcEEEEe--cCceeEEEEccCC
Q psy12131         57 QWIHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------IT-----------LGGRIDMHV--SSEKHSLLVRHIK  113 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~-----------~~~~~~~~~--~~~~~~l~i~~~~  113 (245)
                      ....+.+|+.+.|.|.+.|....  .+.|++  .+..      +.           ...++.+..  ......|+|.+++
T Consensus         7 g~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~   86 (117)
T d1um5h1           7 GPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLT   86 (117)
T ss_dssp             CCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccC
Confidence            34557889999999999876443  577876  1111      11           123555543  2344579999999


Q ss_pred             CCCCeEEEEEEEe
Q psy12131        114 DTDFGNYMCQASN  126 (245)
Q Consensus       114 ~~d~g~y~C~~~n  126 (245)
                      .+|.+.|.|....
T Consensus        87 ~eDtAvYYCAr~~   99 (117)
T d1um5h1          87 SEDSAVYYCARSS   99 (117)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             CCcceEEEEeecc
Confidence            9999999997544

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.39  E-value=0.0021  Score=38.63  Aligned_cols=69  Identities=17%  Similarity=0.315  Sum_probs=46.0

Q ss_pred             EEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ec-----------cCCcEEEEec--CceeEEEEccCCCC
Q psy12131         59 IHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      ..+.+|+.+.|.|.+.|....  -+.|++  .+..      +.           ...++.+..+  .....|+|++++.+
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE   89 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC
Confidence            346789999999999876433  467765  1110      11           1234555432  33456899999999


Q ss_pred             CCeEEEEEEEeC
Q psy12131        116 DFGNYMCQASNN  127 (245)
Q Consensus       116 d~g~y~C~~~n~  127 (245)
                      |.+.|.|.....
T Consensus        90 DtAvYYCAr~~~  101 (123)
T d1mqkh_          90 DTAMYYCVRHEY  101 (123)
T ss_dssp             GCEEEEEEEEET
T ss_pred             cccceeEEecCC
Confidence            999999976543

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.39  E-value=0.0018  Score=38.75  Aligned_cols=69  Identities=20%  Similarity=0.416  Sum_probs=46.8

Q ss_pred             EEecCCCeEEEEEEEeecCCC--eEEEEEC--CEE------ec----------cCCcEEEEec--CceeEEEEccCCCCC
Q psy12131         59 IHTAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT----------LGGRIDMHVS--SEKHSLLVRHIKDTD  116 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~--~~~w~~~--~~~------~~----------~~~~~~~~~~--~~~~~l~i~~~~~~d  116 (245)
                      -.+.+|+.+.|.|.+.|....  .+.|++-  +..      +.          ...++.+..+  .....|+|.+++.+|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            356789999999999876543  5778761  110      11          1235555433  334579999999999


Q ss_pred             CeEEEEEEEeC
Q psy12131        117 FGNYMCQASNN  127 (245)
Q Consensus       117 ~g~y~C~~~n~  127 (245)
                      .+.|.|.....
T Consensus        89 tA~YYCAr~~~   99 (119)
T d1kxvc_          89 TAMYYCKPSLR   99 (119)
T ss_dssp             CEEEEEEEEES
T ss_pred             cceEeeeeccc
Confidence            99999976543

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.38  E-value=0.00083  Score=40.06  Aligned_cols=67  Identities=16%  Similarity=0.384  Sum_probs=44.5

Q ss_pred             EEecCCCeEEEEEEEeecCC--CeEEEEE--CCEE------ec-----------cCCcEEEEec--CceeEEEEccCCCC
Q psy12131         59 IHTAPDMRAEIICNVYANPP--AKVEWFR--DGTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~--~~~~w~~--~~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      ..+.+|+.+.|.|.+.|...  -.+.|++  -+..      +.           ...++.+..+  .....|.|.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e   89 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE   89 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC
Confidence            34778999999999987533  2577775  1111      11           1134555432  33457999999999


Q ss_pred             CCeEEEEEEE
Q psy12131        116 DFGNYMCQAS  125 (245)
Q Consensus       116 d~g~y~C~~~  125 (245)
                      |.+.|.|-..
T Consensus        90 DtAvYYCAr~   99 (115)
T d1f3dh1          90 DSAVYYCAND   99 (115)
T ss_dssp             GCEEEEEEEC
T ss_pred             CcEEEEEecc
Confidence            9999999643

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.37  E-value=0.002  Score=37.10  Aligned_cols=75  Identities=15%  Similarity=0.279  Sum_probs=43.5

Q ss_pred             CCeEEeecceEEecCCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcEE--E-EecCc----eeEEEEccCCCCCCeE
Q psy12131         49 PPEVSVEKQWIHTAPDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRID--M-HVSSE----KHSLLVRHIKDTDFGN  119 (245)
Q Consensus        49 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~~--~-~~~~~----~~~l~i~~~~~~d~g~  119 (245)
                      ||.+.....   ...+..+.|.|.+.+.-+  ..+.|.+++..+..+....  . ...+.    .+.|.+.   ..+...
T Consensus         3 pP~V~v~~~---~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~---~~~~~~   76 (94)
T d1hyrc1           3 PPMVNVTRS---EASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRIC---QGEEQR   76 (94)
T ss_dssp             CCEEEEEEC---CCSSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEE---TTCGGG
T ss_pred             CCEEEEEec---CCCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEc---CCCCCE
Confidence            555544322   124567899999998643  3899999998876543221  1 11111    1233333   334457


Q ss_pred             EEEEEEeCCc
Q psy12131        120 YMCQASNNLG  129 (245)
Q Consensus       120 y~C~~~n~~g  129 (245)
                      |+|.+.....
T Consensus        77 ytC~V~H~~~   86 (94)
T d1hyrc1          77 FTCYMEHSGN   86 (94)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEEEECCC
Confidence            9999987643

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.37  E-value=0.00053  Score=40.66  Aligned_cols=66  Identities=15%  Similarity=0.341  Sum_probs=44.6

Q ss_pred             EEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ec-----------cCCcEEEEec--CceeEEEEccCCCC
Q psy12131         59 IHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      ..+.+|+.+.|.|.+.|....  .+.|++  -+..      +.           ...++.+..+  .....|+|++++.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~e   89 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSE   89 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccC
Confidence            346799999999999876443  577776  1110      11           1235555433  33456999999999


Q ss_pred             CCeEEEEEE
Q psy12131        116 DFGNYMCQA  124 (245)
Q Consensus       116 d~g~y~C~~  124 (245)
                      |.+.|.|-.
T Consensus        90 DtAvYYCA~   98 (114)
T d1indh1          90 DTALYFCAS   98 (114)
T ss_dssp             GCEEEEEEC
T ss_pred             cccEEEECC
Confidence            999999964

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.35  E-value=0.00085  Score=39.94  Aligned_cols=69  Identities=16%  Similarity=0.298  Sum_probs=46.3

Q ss_pred             eEEecCCCeEEEEEEEeecCCC--eEEEEEC--CE------Eec-----------cCCcEEEEec--CceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA--KVEWFRD--GT------AIT-----------LGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~--~~~w~~~--~~------~~~-----------~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      ...+++|+++.|.|.+.|....  .+.|++-  +.      .+.           ...++.+..+  .....|++++++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~   88 (117)
T d1jpth1           9 GGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRA   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCC
Confidence            3457889999999999986543  5777761  11      011           1234555433  3445789999999


Q ss_pred             CCCeEEEEEEEe
Q psy12131        115 TDFGNYMCQASN  126 (245)
Q Consensus       115 ~d~g~y~C~~~n  126 (245)
                      +|.+.|.|....
T Consensus        89 eDTAvYYCAr~~  100 (117)
T d1jpth1          89 EDTAVYYCARDT  100 (117)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CCceEEEEeecC
Confidence            999999996543

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=0.00024  Score=42.42  Aligned_cols=45  Identities=13%  Similarity=0.259  Sum_probs=30.8

Q ss_pred             cceEEEeec----ceEEEeccCCCCCEEEEEEEEcCCCCc--eeeEEEEEE
Q psy12131          2 KEIELLYNR----ESLDLDRVTLKLAGLYQCIASNNIGES--TSKNFIVNV   46 (245)
Q Consensus         2 ~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~l~v   46 (245)
                      +|+++..+.    ..|+|.+++.+|+|.|.|.........  .-..+.|+|
T Consensus        59 gR~sis~d~~~~~~~lti~~L~~eDsa~YyCa~~~~~~~~~~~~~~~~L~V  109 (110)
T d1u9ka_          59 GKFTLKHDPSEAMLQVQMTDLQVTDSGLYRCVIYHPPNDPVVLFHPVRLVV  109 (110)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSCCEECSCCEEEEE
T ss_pred             cEEEEEEECCCCEEEEEECccccCCCEEEEEEEeCCCCCCEEEECCEEEEE
Confidence            577887643    339999999999999999886544321  122455554

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.34  E-value=0.0016  Score=39.23  Aligned_cols=69  Identities=14%  Similarity=0.306  Sum_probs=45.9

Q ss_pred             eEEecCCCeEEEEEEEeecCC--CeEEEEE--CCEE------ec-----------cCCcEEEEec--CceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPP--AKVEWFR--DGTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~--~~~~w~~--~~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      ...+.+|+.+.|.|.+.|...  --+.|++  -+..      +.           ...++.+..+  .....|+|++++.
T Consensus         9 ~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~   88 (121)
T d1j05b_           9 AELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS   88 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCc
Confidence            345789999999999987543  2577876  1111      01           1234555432  3345689999999


Q ss_pred             CCCeEEEEEEEe
Q psy12131        115 TDFGNYMCQASN  126 (245)
Q Consensus       115 ~d~g~y~C~~~n  126 (245)
                      +|.+.|.|....
T Consensus        89 eDtAvYYCAr~~  100 (121)
T d1j05b_          89 EDTAVYYCAPFG  100 (121)
T ss_dssp             GGCEEEEEEEEB
T ss_pred             CcceEEEeEeec
Confidence            999999997543

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00059  Score=40.54  Aligned_cols=66  Identities=15%  Similarity=0.237  Sum_probs=40.3

Q ss_pred             CCCeEEEEEEEeecC-C-CeEEEEECCEEeccCCcEEEE-ec--Cc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         63 PDMRAEIICNVYANP-P-AKVEWFRDGTAITLGGRIDMH-VS--SE----KHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~-~-~~~~w~~~~~~~~~~~~~~~~-~~--~~----~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ....+.|.|.+.+.. . ..+.|.+++..+......... ..  ++    .+.|.|..-.......|+|.+....
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   93 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQG   93 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            356889999999863 3 389999998866543221111 11  11    2355555443334458999999864

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.34  E-value=0.0031  Score=37.85  Aligned_cols=68  Identities=16%  Similarity=0.362  Sum_probs=45.9

Q ss_pred             EEecCCCeEEEEEEEeecCC--CeEEEEE--CCEE------ec-----------cCCcEEEEe--cCceeEEEEccCCCC
Q psy12131         59 IHTAPDMRAEIICNVYANPP--AKVEWFR--DGTA------IT-----------LGGRIDMHV--SSEKHSLLVRHIKDT  115 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~--~~~~w~~--~~~~------~~-----------~~~~~~~~~--~~~~~~l~i~~~~~~  115 (245)
                      ..+.+|+.+.|.|.+.|...  ..+.|++  -|..      +.           ...++.+..  ......|+|.+++.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~e   89 (120)
T d1pg7x1          10 ELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSN   89 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCC
Confidence            45778999999999987543  3577876  1111      11           123555543  233457899999999


Q ss_pred             CCeEEEEEEEe
Q psy12131        116 DFGNYMCQASN  126 (245)
Q Consensus       116 d~g~y~C~~~n  126 (245)
                      |.+.|.|....
T Consensus        90 DtA~YYCAr~~  100 (120)
T d1pg7x1          90 DSAVYYCARED  100 (120)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEeeecC
Confidence            99999998653

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.34  E-value=0.00024  Score=41.90  Aligned_cols=66  Identities=17%  Similarity=0.227  Sum_probs=39.0

Q ss_pred             CCCeEEEEEEEeec-CC-CeEEEEECCEEeccCCcE--EEEecCc---eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         63 PDMRAEIICNVYAN-PP-AKVEWFRDGTAITLGGRI--DMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        63 ~g~~~~l~C~~~~~-~~-~~~~w~~~~~~~~~~~~~--~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      .+..+.|.|.+.|. |. ..+.|.++|.........  ....++.   .+.|.|..-.......|+|.+....
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            57789999999985 33 489999998764321110  0111111   2345554433234557999998754

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.33  E-value=0.0019  Score=38.40  Aligned_cols=69  Identities=25%  Similarity=0.425  Sum_probs=47.0

Q ss_pred             EEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------e----------ccCCcEEEEe--cCceeEEEEccCCCCC
Q psy12131         59 IHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------I----------TLGGRIDMHV--SSEKHSLLVRHIKDTD  116 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~----------~~~~~~~~~~--~~~~~~l~i~~~~~~d  116 (245)
                      ..+.+|+.+.|.|.+.|....  -+.|++  .+..      +          ....++.+..  ......|+|++++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eD   89 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAAD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccccc
Confidence            346789999999999886443  577876  1111      1          1123555543  3345678999999999


Q ss_pred             CeEEEEEEEeC
Q psy12131        117 FGNYMCQASNN  127 (245)
Q Consensus       117 ~g~y~C~~~n~  127 (245)
                      .+.|.|.....
T Consensus        90 tAvYyCAr~~~  100 (116)
T d7fabh1          90 TAVYYCARNLI  100 (116)
T ss_dssp             CEEEEEEEECS
T ss_pred             ceEEEeeeecC
Confidence            99999976543

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.32  E-value=0.0021  Score=38.36  Aligned_cols=71  Identities=17%  Similarity=0.300  Sum_probs=47.6

Q ss_pred             EEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ec-----------cCCcEEEEec--CceeEEEEccCCCC
Q psy12131         59 IHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      ..+.+|+.+.|.|.+.|....  .+.|++  .+..      +.           ...++.+..+  .....|++++++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCC
Confidence            457889999999999886543  467775  1110      11           1235555543  33456899999999


Q ss_pred             CCeEEEEEEEeCCc
Q psy12131        116 DFGNYMCQASNNLG  129 (245)
Q Consensus       116 d~g~y~C~~~n~~g  129 (245)
                      |.+.|.|......+
T Consensus        90 DtAvYYCAr~~~~~  103 (118)
T d2fbjh1          90 DTALYYCARLHYYG  103 (118)
T ss_dssp             GCEEEEEEEEETTT
T ss_pred             cceEEEeeEecCCC
Confidence            99999998665443

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00024  Score=41.95  Aligned_cols=66  Identities=17%  Similarity=0.178  Sum_probs=39.8

Q ss_pred             CCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcE-EEEecCc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         63 PDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRI-DMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~-~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      .++.+.|.|.+.|..+  ..+.|.+++......... .....++    .+.|.|..-.......|+|.+....
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            4678899999998543  389999998865432111 1111111    2345555433334457999998854

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.31  E-value=0.0016  Score=38.63  Aligned_cols=70  Identities=14%  Similarity=0.314  Sum_probs=46.7

Q ss_pred             cceEEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ec-----------cCCcEEEEec--CceeEEEEccC
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------IT-----------LGGRIDMHVS--SEKHSLLVRHI  112 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~  112 (245)
                      +....+.+|+++.|.|.+.|....  .+.|++  .+..      +.           ...++.+..+  .....|++.++
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL   86 (116)
T d1mjuh1           7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (116)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccccc
Confidence            334567899999999999986543  467765  1110      11           1235555432  34457889999


Q ss_pred             CCCCCeEEEEEEE
Q psy12131        113 KDTDFGNYMCQAS  125 (245)
Q Consensus       113 ~~~d~g~y~C~~~  125 (245)
                      +.+|.+.|.|-..
T Consensus        87 ~~eDtAvYYCAr~   99 (116)
T d1mjuh1          87 TSDDSAVYYCANK   99 (116)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCCceEEEEccc
Confidence            9999999999643

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.0002  Score=43.17  Aligned_cols=33  Identities=21%  Similarity=0.294  Sum_probs=25.3

Q ss_pred             cceEEEeec----ceEEEeccCCCCCEEEEEEEEcCC
Q psy12131          2 KEIELLYNR----ESLDLDRVTLKLAGLYQCIASNNI   34 (245)
Q Consensus         2 ~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~   34 (245)
                      +|+.+..+.    .+|+|.+++.+|+|.|.|.+....
T Consensus        63 ~R~~~~~~~~~~~~~Lti~~l~~~Dsg~Y~Cav~~~~   99 (113)
T d1smoa_          63 GRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPP   99 (113)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTT
T ss_pred             CeEEEEEECCCCEEEEEEccCCcccCceEEEEEECCC
Confidence            467766432    359999999999999999886543

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00042  Score=41.29  Aligned_cols=68  Identities=13%  Similarity=0.177  Sum_probs=42.1

Q ss_pred             ecCCCeEEEEEEEeecCC-C-eEEEEECCEEeccCCcEEE---E-ecC------ceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         61 TAPDMRAEIICNVYANPP-A-KVEWFRDGTAITLGGRIDM---H-VSS------EKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~~~~-~-~~~w~~~~~~~~~~~~~~~---~-~~~------~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ...++.+.|.|.+.+.-+ . .+.|++++..+........   . ...      ..+.|.|..-.......|+|.+....
T Consensus        17 ~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          17 LALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             TTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             hccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCC
Confidence            456789999999998643 3 8999999988765322110   0 001      12345554433333568999998754

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=9.1e-05  Score=45.35  Aligned_cols=32  Identities=19%  Similarity=0.219  Sum_probs=25.5

Q ss_pred             cceEEEe----ecceEEEeccCCCCCEEEEEEEEcC
Q psy12131          2 KEIELLY----NRESLDLDRVTLKLAGLYQCIASNN   33 (245)
Q Consensus         2 ~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~   33 (245)
                      +|+.+..    +..+|+|.+++++|+|.|.|.+...
T Consensus        70 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          70 DRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             TTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEET
T ss_pred             eEEEEeeeCcCCEEEEEECCCChHHCEEEEEEEEeC
Confidence            4566653    2456999999999999999999754

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.29  E-value=0.0015  Score=38.94  Aligned_cols=67  Identities=18%  Similarity=0.410  Sum_probs=44.8

Q ss_pred             eEEecCCCeEEEEEEEeecCCC--eEEEEEC--CE------Eec-----------cCCcEEEEec--CceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA--KVEWFRD--GT------AIT-----------LGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~--~~~w~~~--~~------~~~-----------~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      ...+.+|+.+.|.|.+.|....  .+.|++-  +.      .+.           ...++.+..+  ...-.|++.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~   88 (118)
T d1nlbh1           9 PELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKN   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeeccc
Confidence            3457899999999999876433  5777651  11      011           1235555433  2345789999999


Q ss_pred             CCCeEEEEEE
Q psy12131        115 TDFGNYMCQA  124 (245)
Q Consensus       115 ~d~g~y~C~~  124 (245)
                      +|.+.|.|-.
T Consensus        89 eDtAvYYCAr   98 (118)
T d1nlbh1          89 EDTATYFCAR   98 (118)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEee
Confidence            9999999953

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.29  E-value=0.0003  Score=41.39  Aligned_cols=66  Identities=14%  Similarity=0.174  Sum_probs=39.8

Q ss_pred             CCCeEEEEEEEeec-CC-CeEEEEECCEEeccCCcEE-EEecCc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         63 PDMRAEIICNVYAN-PP-AKVEWFRDGTAITLGGRID-MHVSSE----KHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        63 ~g~~~~l~C~~~~~-~~-~~~~w~~~~~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ....+.|.|.+.+. |. ..+.|.+++..+....... ....++    .+.|.|..-.......|+|.+....
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            45678999999985 43 3899999998754321111 111111    2355555433334567999998753

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.28  E-value=0.00073  Score=40.64  Aligned_cols=66  Identities=20%  Similarity=0.423  Sum_probs=44.3

Q ss_pred             EecCCCeEEEEEEEeecCC--CeEEEEE--CCEE------ec-----------cCCcEEEEe--cCceeEEEEccCCCCC
Q psy12131         60 HTAPDMRAEIICNVYANPP--AKVEWFR--DGTA------IT-----------LGGRIDMHV--SSEKHSLLVRHIKDTD  116 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~--~~~~w~~--~~~~------~~-----------~~~~~~~~~--~~~~~~l~i~~~~~~d  116 (245)
                      .+.+|+++.|.|.+.|...  -.+.|++  -+..      +.           ...++.+..  ......|+|.++..+|
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eD   90 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDD   90 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGG
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccc
Confidence            4678999999999887543  2578876  1111      11           113455543  2334579999999999


Q ss_pred             CeEEEEEEE
Q psy12131        117 FGNYMCQAS  125 (245)
Q Consensus       117 ~g~y~C~~~  125 (245)
                      .+.|.|...
T Consensus        91 sAvYYCA~~   99 (119)
T d1qnzh_          91 SAVYYCAIH   99 (119)
T ss_dssp             CEEEEEEEC
T ss_pred             eeEEEEEEe
Confidence            999999654

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.28  E-value=0.0017  Score=38.05  Aligned_cols=69  Identities=19%  Similarity=0.319  Sum_probs=46.7

Q ss_pred             eEEecCCCeEEEEEEEeecCCC--eEEEEE--CCE--E----ec-------------cCCcEEEEec--CceeEEEEccC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA--KVEWFR--DGT--A----IT-------------LGGRIDMHVS--SEKHSLLVRHI  112 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~--~----~~-------------~~~~~~~~~~--~~~~~l~i~~~  112 (245)
                      ...+.+|+++.|.|.+.|....  -+.|++  .+.  +    +.             ...++.+..+  .....|+|+++
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL   88 (109)
T d2ck0h1           9 GGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNL   88 (109)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCC
Confidence            3457899999999999876543  577776  111  1    10             1135555543  34457899999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12131        113 KDTDFGNYMCQASN  126 (245)
Q Consensus       113 ~~~d~g~y~C~~~n  126 (245)
                      +.+|.+.|.|....
T Consensus        89 ~~eDTAvYYCAr~~  102 (109)
T d2ck0h1          89 KTEDTGIYYCVRGR  102 (109)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CHhHCEEEEEEEcC
Confidence            99999999997543

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=0.00041  Score=40.85  Aligned_cols=69  Identities=13%  Similarity=0.110  Sum_probs=37.5

Q ss_pred             cCCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcEEEEecCc---eeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131         62 APDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRIDMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus        62 ~~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g~~  131 (245)
                      ..++.+.|.|.+.|..+  ..+.|..++.............++.   .+.|.|..-.. +.+.|+|.+....+..
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   91 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPASST   91 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGGGTE
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHc-CCceEEEEEEECCCCE
Confidence            35678999999998543  3799976553211100001111211   24566665544 3568999999876543

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.26  E-value=0.0011  Score=39.47  Aligned_cols=67  Identities=18%  Similarity=0.342  Sum_probs=45.0

Q ss_pred             eEEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ecc-----------CCcEEEEec--CceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------ITL-----------GGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~~-----------~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      ...+++|+.+.|.|.+.|....  .+.|++  .+..      +..           ..++.+..+  .....|++++++.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~   88 (118)
T d2jelh1           9 PELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccccc
Confidence            4457899999999999886543  577776  1111      110           134544432  3345789999999


Q ss_pred             CCCeEEEEEE
Q psy12131        115 TDFGNYMCQA  124 (245)
Q Consensus       115 ~d~g~y~C~~  124 (245)
                      +|.+.|.|-.
T Consensus        89 eDTAvYYCAr   98 (118)
T d2jelh1          89 EDSAIYYCAR   98 (118)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceeeeEEE
Confidence            9999999954

>d2qfra1 b.1.12.1 (A:9-120) Purple acid phosphatase, N-terminal domain {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Purple acid phosphatase, N-terminal domain
family: Purple acid phosphatase, N-terminal domain
domain: Purple acid phosphatase, N-terminal domain
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.26  E-value=0.003  Score=37.68  Aligned_cols=36  Identities=22%  Similarity=0.331  Sum_probs=29.9

Q ss_pred             eeeeEEEecCCCCCceEEEEEEEEecCCCCCCCcceEEecCC
Q psy12131        201 IYTQSYNITGLQLFTQYEASVLAKNRFGWSRPSKAYVFATEG  242 (245)
Q Consensus       201 ~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~~~s~~~~~~t~~  242 (245)
                      .......|.+|.+++.|.|+|      |.+.+|....|+|+|
T Consensus        77 ~~~h~v~Lt~L~P~T~Y~YrV------G~~~~S~~~~F~T~P  112 (112)
T d2qfra1          77 GFIHHTTIRKLKYNTKYYYEV------GLRNTTRRFSFITPP  112 (112)
T ss_dssp             CEEEEEEECSCCTTCEEEEEE------CCSSSCEEEEEECCC
T ss_pred             cEEEEEEECCCCCCCEEEEEE------CCCCceeeEEEEcCC
Confidence            345678999999999999997      445578999999975

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.26  E-value=0.00095  Score=40.02  Aligned_cols=67  Identities=19%  Similarity=0.380  Sum_probs=45.1

Q ss_pred             EEecCCCeEEEEEEEeecCCC--eEEEEEC--CEE------ec-----------cCCcEEEEec--CceeEEEEccCCCC
Q psy12131         59 IHTAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~--~~~w~~~--~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      ..+.+|+.+.|.|.+.|....  -+.|++-  +..      +.           ...++.+..+  .....|++++++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~e   89 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPE   89 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecccc
Confidence            346789999999999876443  5778761  110      11           1235555543  23446889999999


Q ss_pred             CCeEEEEEEE
Q psy12131        116 DFGNYMCQAS  125 (245)
Q Consensus       116 d~g~y~C~~~  125 (245)
                      |.+.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d2p49b1          90 DTATYYCAAG   99 (121)
T ss_dssp             GCEEEEEEES
T ss_pred             ceeEEeeecc
Confidence            9999999754

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.26  E-value=0.0017  Score=38.95  Aligned_cols=70  Identities=16%  Similarity=0.363  Sum_probs=46.9

Q ss_pred             ceEEecCCCeEEEEEEEeecCCC--eEEEEEC--CEE------ec-----------cCCcEEEEec--CceeEEEEccCC
Q psy12131         57 QWIHTAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIK  113 (245)
Q Consensus        57 ~~~~~~~g~~~~l~C~~~~~~~~--~~~w~~~--~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~  113 (245)
                      ....+++|+.+.|.|.+.|....  -+.|++-  +..      +.           ...++.+..+  .....|++++++
T Consensus         9 g~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~   88 (122)
T d1vgeh1           9 GAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLR   88 (122)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccC
Confidence            34457899999999999876543  5777761  111      11           1245555443  334568999999


Q ss_pred             CCCCeEEEEEEEe
Q psy12131        114 DTDFGNYMCQASN  126 (245)
Q Consensus       114 ~~d~g~y~C~~~n  126 (245)
                      .+|.+.|.|....
T Consensus        89 ~eDtA~YYCAr~~  101 (122)
T d1vgeh1          89 PEDTAVYYCARDP  101 (122)
T ss_dssp             GGGCEEEEEEEET
T ss_pred             CCcceEEEEeecC
Confidence            9999999997653

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.23  E-value=0.003  Score=37.60  Aligned_cols=68  Identities=10%  Similarity=0.306  Sum_probs=44.6

Q ss_pred             eEEecCCCeEEEEEEEeecCC--CeEEEEE--CCEEe------c-----------cCCcEEEEec--CceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPP--AKVEWFR--DGTAI------T-----------LGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~--~~~~w~~--~~~~~------~-----------~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      ...+.+|+++.|.|.+.|...  --+.|++  -+..+      .           ...++.+..+  .....|+|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~   88 (117)
T d1mfah1           9 TVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTS   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCC
Confidence            445788999999999987543  2566765  11111      0           1124444432  3345789999999


Q ss_pred             CCCeEEEEEEE
Q psy12131        115 TDFGNYMCQAS  125 (245)
Q Consensus       115 ~d~g~y~C~~~  125 (245)
                      +|.+.|.|...
T Consensus        89 eDtAvYYCAr~   99 (117)
T d1mfah1          89 EDSAVYYCTRG   99 (117)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEecc
Confidence            99999999643

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.23  E-value=0.00032  Score=41.35  Aligned_cols=65  Identities=15%  Similarity=0.144  Sum_probs=39.4

Q ss_pred             CCeEEEEEEEeecCC--CeEEEEECCEEeccCCcEE-EEecCc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         64 DMRAEIICNVYANPP--AKVEWFRDGTAITLGGRID-MHVSSE----KHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        64 g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ...+.|.|.+.+..+  ..+.|.+++.......... ....++    .+.|.|..-.......|+|.+....
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            567899999988654  3799999988654211110 111111    2345555544344557999998754

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.23  E-value=0.0031  Score=37.50  Aligned_cols=68  Identities=18%  Similarity=0.340  Sum_probs=46.1

Q ss_pred             eEEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ec-----------cCCcEEEEec--CceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      ...+.+|+++.|.|.+.|....  -+.|++  .+..      +.           ...++.+..+  .....|++.+++.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~   88 (117)
T d1jnhb1           9 AELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTS   88 (117)
T ss_dssp             CEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCC
Confidence            3456789999999999986544  577876  1110      11           1235555443  3345789999999


Q ss_pred             CCCeEEEEEEE
Q psy12131        115 TDFGNYMCQAS  125 (245)
Q Consensus       115 ~d~g~y~C~~~  125 (245)
                      +|.+.|.|...
T Consensus        89 eDTAvYYCAr~   99 (117)
T d1jnhb1          89 EDSAVYSCSRG   99 (117)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeec
Confidence            99999999654

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.22  E-value=0.00057  Score=39.69  Aligned_cols=62  Identities=18%  Similarity=0.252  Sum_probs=36.2

Q ss_pred             CCCeEEEEEEEeecCC-C-eEEEEECCEEeccCCcEEE-EecCc----eeEEEEccCCCCCCeEEEEEEEeC
Q psy12131         63 PDMRAEIICNVYANPP-A-KVEWFRDGTAITLGGRIDM-HVSSE----KHSLLVRHIKDTDFGNYMCQASNN  127 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~-~-~~~w~~~~~~~~~~~~~~~-~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~  127 (245)
                      .+..++|.|.+.|..+ . .+.|++++..+........ ...++    .+.|.+..   .+...|+|.+...
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~   83 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHS   83 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeC
Confidence            4568999999998544 3 8999998876643221111 11111    12344432   3444688887764

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.00018  Score=43.57  Aligned_cols=32  Identities=19%  Similarity=0.109  Sum_probs=24.9

Q ss_pred             cceEEEe----ecceEEEeccCCCCCEEEEEEEEcC
Q psy12131          2 KEIELLY----NRESLDLDRVTLKLAGLYQCIASNN   33 (245)
Q Consensus         2 ~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~~~   33 (245)
                      +|+.+..    +..+|+|.+++.+|+|.|.|++...
T Consensus        66 ~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          66 GRAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             TTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEECC
T ss_pred             CCeEEEEeCcCCEEEEEECCCChhHCEEEEEEEEeC
Confidence            3455542    3456999999999999999999754

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.22  E-value=0.0022  Score=38.08  Aligned_cols=67  Identities=22%  Similarity=0.486  Sum_probs=45.8

Q ss_pred             EecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ec----------cCCcEEEEec--CceeEEEEccCCCCCC
Q psy12131         60 HTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------IT----------LGGRIDMHVS--SEKHSLLVRHIKDTDF  117 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~----------~~~~~~~~~~--~~~~~l~i~~~~~~d~  117 (245)
                      .+++|+.+.|.|.+.|....  .+.|++  .|..      +.          ...++.+..+  .....|++.++..+|.
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDt   90 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDT   90 (117)
T ss_dssp             EECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcc
Confidence            46789999999999886543  577876  1111      11          1235555443  3345799999999999


Q ss_pred             eEEEEEEEe
Q psy12131        118 GNYMCQASN  126 (245)
Q Consensus       118 g~y~C~~~n  126 (245)
                      +.|.|-...
T Consensus        91 AvYYCAr~~   99 (117)
T d1c5db1          91 AIYFCTRED   99 (117)
T ss_dssp             EEEEEEECC
T ss_pred             eEEEEeccC
Confidence            999996543

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.22  E-value=0.003  Score=38.11  Aligned_cols=68  Identities=19%  Similarity=0.336  Sum_probs=46.4

Q ss_pred             eEEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ec-----------cCCcEEEEe--cCceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------IT-----------LGGRIDMHV--SSEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~-----------~~~~~~~~~--~~~~~~l~i~~~~~  114 (245)
                      ...+++|+.+.|.|.+.|....  .+.|++  .+..      +.           ...++.+..  ......|++.+++.
T Consensus         8 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~   87 (126)
T d1lmka1           8 TELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTS   87 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCC
Confidence            4457789999999999986543  567766  1111      11           124555543  34456889999999


Q ss_pred             CCCeEEEEEEE
Q psy12131        115 TDFGNYMCQAS  125 (245)
Q Consensus       115 ~d~g~y~C~~~  125 (245)
                      +|.+.|.|...
T Consensus        88 eDTAvYYCAr~   98 (126)
T d1lmka1          88 EDSAVYYCARG   98 (126)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeec
Confidence            99999999643

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.21  E-value=0.0015  Score=39.06  Aligned_cols=68  Identities=21%  Similarity=0.427  Sum_probs=46.0

Q ss_pred             eEEecCCCeEEEEEEEeecCCC--eEEEEEC--CEE------ec-----------cCCcEEEEec--CceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~--~~~w~~~--~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      ...+.+|+++.|.|.+.|....  -+.|++-  +..      +.           ...++.+..+  .....|++.+++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~   88 (119)
T d1rz7h1           9 AEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRS   88 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCc
Confidence            3456789999999999986543  5777651  110      11           1235555442  3445789999999


Q ss_pred             CCCeEEEEEEE
Q psy12131        115 TDFGNYMCQAS  125 (245)
Q Consensus       115 ~d~g~y~C~~~  125 (245)
                      +|.+.|.|...
T Consensus        89 eDTAvYYCAr~   99 (119)
T d1rz7h1          89 EDTAVYYCAAD   99 (119)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccceEEEEeec
Confidence            99999999654

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.21  E-value=0.0015  Score=38.89  Aligned_cols=67  Identities=25%  Similarity=0.451  Sum_probs=45.4

Q ss_pred             EecCCCeEEEEEEEeecCCC--eEEEEEC--CEE------ec----------cCCcEEEEe--cCceeEEEEccCCCCCC
Q psy12131         60 HTAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT----------LGGRIDMHV--SSEKHSLLVRHIKDTDF  117 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~~--~~~w~~~--~~~------~~----------~~~~~~~~~--~~~~~~l~i~~~~~~d~  117 (245)
                      .+.+|+.+.|.|.+.|....  .+.|++-  +..      +.          ...++.+..  ......|++++++.+|.
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDT   90 (116)
T d1a2yb_          11 LVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDT   90 (116)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccc
Confidence            46789999999999986543  5778761  111      11          012445443  33345799999999999


Q ss_pred             eEEEEEEEe
Q psy12131        118 GNYMCQASN  126 (245)
Q Consensus       118 g~y~C~~~n  126 (245)
                      +.|.|-...
T Consensus        91 AvYYCAr~~   99 (116)
T d1a2yb_          91 ARYYCARER   99 (116)
T ss_dssp             EEEEEEEES
T ss_pred             eEEEEEEeC
Confidence            999997543

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.20  E-value=0.0017  Score=39.29  Aligned_cols=69  Identities=12%  Similarity=0.285  Sum_probs=45.8

Q ss_pred             eEEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------e-----------ccCCcEEEEec--CceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------I-----------TLGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~-----------~~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      ...+++|+.+.|.|.+.|....  .+.|++  .+..      +           ....++.+..+  .....|+|++++.
T Consensus         9 ~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~   88 (125)
T d1rihh1           9 NELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTS   88 (125)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCc
Confidence            3457889999999999875433  466765  1110      1           11235555433  3345788999999


Q ss_pred             CCCeEEEEEEEe
Q psy12131        115 TDFGNYMCQASN  126 (245)
Q Consensus       115 ~d~g~y~C~~~n  126 (245)
                      +|.+.|.|-...
T Consensus        89 eDtAvYYCAR~~  100 (125)
T d1rihh1          89 EDSAVYYCARES  100 (125)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEEEeeeC
Confidence            999999997553

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.19  E-value=0.002  Score=39.39  Aligned_cols=68  Identities=19%  Similarity=0.454  Sum_probs=45.9

Q ss_pred             EecCCCeEEEEEEEeecCC----CeEEEEEC--CEE---e-------------ccCCcEEEEec--CceeEEEEccCCCC
Q psy12131         60 HTAPDMRAEIICNVYANPP----AKVEWFRD--GTA---I-------------TLGGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~----~~~~w~~~--~~~---~-------------~~~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      .+.+|+.+.|.|.+.|...    .-+.|++-  +..   +             ....++.+..+  .....|+|.+++.+
T Consensus        11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~e   90 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPV   90 (132)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcc
Confidence            4678999999999987543    25789861  111   1             01245555432  33457999999999


Q ss_pred             CCeEEEEEEEeC
Q psy12131        116 DFGNYMCQASNN  127 (245)
Q Consensus       116 d~g~y~C~~~n~  127 (245)
                      |.+.|.|.....
T Consensus        91 DtAvYYCAr~~~  102 (132)
T d1tjgh1          91 DTATYFCAHRRG  102 (132)
T ss_dssp             GCEEEEEEEECC
T ss_pred             cceEEEEEEecC
Confidence            999999986643

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.18  E-value=0.0012  Score=40.00  Aligned_cols=68  Identities=21%  Similarity=0.421  Sum_probs=44.8

Q ss_pred             EEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ecc-----------CCcEEEEec--CceeEEEEccCCCC
Q psy12131         59 IHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------ITL-----------GGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~~-----------~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      ..+++|+.+.|.|.+.|....  .+.|++  .+..      +..           ..++.+..+  .....|+|++++.+
T Consensus         9 ~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~e   88 (126)
T d1rjca1           9 GSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPE   88 (126)
T ss_dssp             EEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCcc
Confidence            456789999999999875443  577876  1111      111           135555433  23446899999999


Q ss_pred             CCeEEEEEEEe
Q psy12131        116 DFGNYMCQASN  126 (245)
Q Consensus       116 d~g~y~C~~~n  126 (245)
                      |.+.|.|....
T Consensus        89 DTAvYYCAr~~   99 (126)
T d1rjca1          89 DTAMYYCAADT   99 (126)
T ss_dssp             GCEEEEEEECC
T ss_pred             cCceeEEEeec
Confidence            99999997554

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.17  E-value=0.0026  Score=37.97  Aligned_cols=68  Identities=21%  Similarity=0.389  Sum_probs=46.0

Q ss_pred             EEecCCCeEEEEEEEeecCCC---eEEEEE--CCEEe------c----------cCCcEEEEe--cCceeEEEEccCCCC
Q psy12131         59 IHTAPDMRAEIICNVYANPPA---KVEWFR--DGTAI------T----------LGGRIDMHV--SSEKHSLLVRHIKDT  115 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~---~~~w~~--~~~~~------~----------~~~~~~~~~--~~~~~~l~i~~~~~~  115 (245)
                      ..+++|+.+.|.|.+.|....   -+.|++  .+..+      .          ...++.+..  ......|++.+++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~e   89 (119)
T d1ncwh1          10 GLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTE   89 (119)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccC
Confidence            346789999999999987553   367876  22111      1          123455543  334467899999999


Q ss_pred             CCeEEEEEEEe
Q psy12131        116 DFGNYMCQASN  126 (245)
Q Consensus       116 d~g~y~C~~~n  126 (245)
                      |.+.|.|-...
T Consensus        90 DTAvYYCAr~~  100 (119)
T d1ncwh1          90 DTATYYCAGLL  100 (119)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CceEEEEeEec
Confidence            99999996443

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.17  E-value=0.0024  Score=38.15  Aligned_cols=68  Identities=15%  Similarity=0.340  Sum_probs=45.4

Q ss_pred             eEEecCCCeEEEEEEEeecCCC--eEEEEEC--CEE------ec-----------cCCcEEEEec--CceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~--~~~w~~~--~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      ...+.+|+++.|.|.+.|....  .+.|++-  +..      +.           ...++.+..+  .....|+|.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (119)
T d1eapb1           9 TELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTS   88 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccC
Confidence            3456789999999999886443  5778751  111      11           1235555432  3345789999999


Q ss_pred             CCCeEEEEEEE
Q psy12131        115 TDFGNYMCQAS  125 (245)
Q Consensus       115 ~d~g~y~C~~~  125 (245)
                      +|.+.|.|...
T Consensus        89 eDTAvYYCAr~   99 (119)
T d1eapb1          89 EDSAVYFCKRS   99 (119)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEEEEe
Confidence            99999999643

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.16  E-value=3.1e-05  Score=46.09  Aligned_cols=68  Identities=19%  Similarity=0.274  Sum_probs=40.8

Q ss_pred             CCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcEE-EEecCc----eeEEEEccCCCCCCeEEEEEEEeCCce
Q psy12131         63 PDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRID-MHVSSE----KHSLLVRHIKDTDFGNYMCQASNNLGS  130 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g~  130 (245)
                      .+..+.|.|.+.+..+  ..+.|.+++..+....... ....+.    .+.|.|..-...+...|+|.+.+....
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~   93 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET   93 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCc
Confidence            3567899999998543  3899999998876432211 111111    123444433333456799999986543

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.15  E-value=0.0031  Score=38.24  Aligned_cols=69  Identities=16%  Similarity=0.385  Sum_probs=46.2

Q ss_pred             eEEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ec-----------cCCcEEEEec--CceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      ...+++|+.+.|.|.+.|....  -+.|++  .+..      +.           ...++.+..+  .....|++++++.
T Consensus         8 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~   87 (130)
T d1rhhb1           8 AEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRS   87 (130)
T ss_dssp             CEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCC
Confidence            3457899999999999875432  577776  1111      11           1235555443  3345688999999


Q ss_pred             CCCeEEEEEEEe
Q psy12131        115 TDFGNYMCQASN  126 (245)
Q Consensus       115 ~d~g~y~C~~~n  126 (245)
                      +|.+.|.|....
T Consensus        88 eDtAvYyCAr~~   99 (130)
T d1rhhb1          88 DDTAVYYCARDF   99 (130)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CCcEEEEEEeec
Confidence            999999997654

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.0002  Score=47.28  Aligned_cols=39  Identities=26%  Similarity=0.174  Sum_probs=32.8

Q ss_pred             eEEEecCCCCCceEEEEEEEEecCCCCCC---CcceEEecCC
Q psy12131        204 QSYNITGLQLFTQYEASVLAKNRFGWSRP---SKAYVFATEG  242 (245)
Q Consensus       204 ~~~~i~~l~~~~~y~~~v~a~N~~G~~~~---s~~~~~~t~~  242 (245)
                      ..+.|.+|.+++.|.|+|.|.|..|.+..   ++.+.++|.|
T Consensus       155 ~~~~i~~L~p~t~Y~~~V~A~n~~~~~~~~s~s~~~~~rT~P  196 (196)
T d2dtge2         155 ESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMP  196 (196)
T ss_dssp             SEEEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEECCC
T ss_pred             EEEEECCCCCCCEEEEEEEEEECCCCCCCccCcceEEeeCCC
Confidence            67999999999999999999999998754   4566676654

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.14  E-value=0.0022  Score=38.99  Aligned_cols=68  Identities=19%  Similarity=0.377  Sum_probs=45.9

Q ss_pred             EEecCCCeEEEEEEEeecCCC--eEEEEEC--CEE------ec-----------cCCcEEEEecC--ceeEEEEccCCCC
Q psy12131         59 IHTAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT-----------LGGRIDMHVSS--EKHSLLVRHIKDT  115 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~--~~~w~~~--~~~------~~-----------~~~~~~~~~~~--~~~~l~i~~~~~~  115 (245)
                      ..+.+|+.+.|.|.+.|....  -+.|++-  |..      +.           ...++.+..+.  ....|+|.+++.+
T Consensus        10 ~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~e   89 (135)
T d1ieha_          10 GLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSE   89 (135)
T ss_dssp             CEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSS
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcc
Confidence            346789999999999886443  4778751  110      11           12355554432  3457899999999


Q ss_pred             CCeEEEEEEEe
Q psy12131        116 DFGNYMCQASN  126 (245)
Q Consensus       116 d~g~y~C~~~n  126 (245)
                      |.+.|.|....
T Consensus        90 DTAvYYCAr~~  100 (135)
T d1ieha_          90 DTAVYYCAKYS  100 (135)
T ss_dssp             SCEEEEEEEBS
T ss_pred             cceeeEEEEec
Confidence            99999997654

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.0023  Score=37.70  Aligned_cols=74  Identities=9%  Similarity=0.137  Sum_probs=43.0

Q ss_pred             cCCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcE--EEEecCc---eeEEEEccCCCC--CCeEEEEEEEeCCceeE
Q psy12131         62 APDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRI--DMHVSSE---KHSLLVRHIKDT--DFGNYMCQASNNLGSSQ  132 (245)
Q Consensus        62 ~~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~--~~~~~~~---~~~l~i~~~~~~--d~g~y~C~~~n~~g~~~  132 (245)
                      .....+.|.|.+.|..+  ..+.|.+++..+......  ....++.   .+.|.|..-...  ....|+|.+....+...
T Consensus        19 ~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~~   98 (105)
T d1dn0b2          19 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKE   98 (105)
T ss_dssp             --CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEE
T ss_pred             CCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCEE
Confidence            34678899999998543  389999988655432110  1112221   235555543321  22479999999876655


Q ss_pred             EEE
Q psy12131        133 QFI  135 (245)
Q Consensus       133 ~~~  135 (245)
                      ..+
T Consensus        99 ~~v  101 (105)
T d1dn0b2          99 KNV  101 (105)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            544

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.12  E-value=0.0018  Score=39.10  Aligned_cols=67  Identities=16%  Similarity=0.397  Sum_probs=45.4

Q ss_pred             eEEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ec-----------cCCcEEEEec--CceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      ...+++|+++.|.|.+.|....  -+.|++  .+..      +.           ...++.+..+  .....|++.+++.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~   88 (127)
T d1n0xh1           9 AEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRS   88 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCC
Confidence            4557889999999999986443  467776  1111      11           1235555443  3345788999999


Q ss_pred             CCCeEEEEEE
Q psy12131        115 TDFGNYMCQA  124 (245)
Q Consensus       115 ~d~g~y~C~~  124 (245)
                      +|.+.|.|.-
T Consensus        89 eDtAvYYCAR   98 (127)
T d1n0xh1          89 ADTAVYYCAR   98 (127)
T ss_dssp             GGCEEEEEEE
T ss_pred             CCceEEEEEe
Confidence            9999999964

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.0041  Score=35.69  Aligned_cols=69  Identities=20%  Similarity=0.261  Sum_probs=48.4

Q ss_pred             cceEEecCCCeEEEEEEEeecCCCeEEE-EECCEEecc-CCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         56 KQWIHTAPDMRAEIICNVYANPPAKVEW-FRDGTAITL-GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        56 ~~~~~~~~g~~~~l~C~~~~~~~~~~~w-~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ++.+.+.+|+.+.+.|.+. .|...+.. ...+..+.. +..+.....   .-++|.++...+.|.|.|.+....
T Consensus        12 p~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~Dpk---~Gf~I~~~~~~~~g~y~C~a~~~g   82 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWDSR---KGFIISNATYKEIGLLTCEATVNG   82 (95)
T ss_dssp             CEEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEEETT---TEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEECCC---CCEEEeCCCcccCeEEEEEEEECC
Confidence            4467788999999999998 56666554 435554443 333332222   248899999999999999998764

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.11  E-value=0.0075  Score=35.98  Aligned_cols=67  Identities=16%  Similarity=0.369  Sum_probs=45.5

Q ss_pred             EecCCCeEEEEEEEeecCCC--eEEEEE--CCEEe------c-------------cCCcEEEEec--CceeEEEEccCCC
Q psy12131         60 HTAPDMRAEIICNVYANPPA--KVEWFR--DGTAI------T-------------LGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~~------~-------------~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      .+.+|+++.|.|.+.|....  .+.|++  .+..+      .             ...++.+..+  .....|+|.+++.
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~~   90 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRA   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeeccC
Confidence            46789999999999876443  577876  22111      0             0135555432  3446789999999


Q ss_pred             CCCeEEEEEEEe
Q psy12131        115 TDFGNYMCQASN  126 (245)
Q Consensus       115 ~d~g~y~C~~~n  126 (245)
                      +|.+.|.|....
T Consensus        91 eDtAvYYCA~~~  102 (120)
T d1dlfh_          91 EDTGIYYCTGIY  102 (120)
T ss_dssp             GGCEEEEEEEEB
T ss_pred             CCceEEEeeEec
Confidence            999999997543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.10  E-value=0.0034  Score=37.80  Aligned_cols=68  Identities=21%  Similarity=0.405  Sum_probs=46.5

Q ss_pred             EEecCCCeEEEEEEEeecCCC--eEEEEEC--CEE------ec-----------cCCcEEEEec--CceeEEEEccCCCC
Q psy12131         59 IHTAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~--~~~w~~~--~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      -.+.+|+++.|.|.+.|....  .+.|++-  +..      +.           ...++.+..+  .....|++.++..+
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~e   88 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSE   88 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCC
Confidence            357789999999999986544  5778761  110      11           1235555433  34457899999999


Q ss_pred             CCeEEEEEEEe
Q psy12131        116 DFGNYMCQASN  126 (245)
Q Consensus       116 d~g~y~C~~~n  126 (245)
                      |.+.|.|....
T Consensus        89 DtAvYYCAr~~   99 (124)
T d1zvya1          89 DTAIYTCGATR   99 (124)
T ss_dssp             GCEEEEEEECS
T ss_pred             cceEEEEeecc
Confidence            99999997653

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.10  E-value=0.003  Score=38.34  Aligned_cols=68  Identities=19%  Similarity=0.403  Sum_probs=45.9

Q ss_pred             EEecCCCeEEEEEEEeecCCC--eEEEEEC--CE---Ee---c----------------cCCcEEEEe--cCceeEEEEc
Q psy12131         59 IHTAPDMRAEIICNVYANPPA--KVEWFRD--GT---AI---T----------------LGGRIDMHV--SSEKHSLLVR  110 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~--~~~w~~~--~~---~~---~----------------~~~~~~~~~--~~~~~~l~i~  110 (245)
                      ..+.+|+++.|.|.+.|....  .+.|++-  +.   -+   .                ...++.+..  ......|+|+
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~   89 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMN   89 (127)
T ss_dssp             EECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred             ceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeee
Confidence            346789999999999876443  5788861  11   11   0                012454433  2345678999


Q ss_pred             cCCCCCCeEEEEEEEe
Q psy12131        111 HIKDTDFGNYMCQASN  126 (245)
Q Consensus       111 ~~~~~d~g~y~C~~~n  126 (245)
                      +++.+|.+.|.|....
T Consensus        90 ~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          90 SLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             SCCGGGCEEEEEEEES
T ss_pred             cccccceeEEEEEEEe
Confidence            9999999999998653

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.09  E-value=0.0017  Score=39.16  Aligned_cols=66  Identities=18%  Similarity=0.368  Sum_probs=43.5

Q ss_pred             EecCCCeEEEEEEEeecCCC----eEEEEE--CCEEe------cc----------CCcEEEEec--CceeEEEEccCCCC
Q psy12131         60 HTAPDMRAEIICNVYANPPA----KVEWFR--DGTAI------TL----------GGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~~----~~~w~~--~~~~~------~~----------~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      .+.+|+.++|.|.+.|....    -+.|++  .+..+      ..          ..++.+..+  .....|+|++++.+
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~e   90 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETA   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccc
Confidence            46789999999999875322    467886  11111      11          124544432  23456999999999


Q ss_pred             CCeEEEEEEE
Q psy12131        116 DFGNYMCQAS  125 (245)
Q Consensus       116 d~g~y~C~~~  125 (245)
                      |.+.|.|...
T Consensus        91 DsAvYyCAr~  100 (123)
T d1r0ah1          91 DTAIYYCAQS  100 (123)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEeeccc
Confidence            9999999754

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.09  E-value=0.0032  Score=36.67  Aligned_cols=65  Identities=14%  Similarity=0.348  Sum_probs=39.1

Q ss_pred             CCCeEEEEEEEeecCCC--eEEEEE--CCEEe------c-----------cCCcEEEEec--CceeEEEEccCCCCCCeE
Q psy12131         63 PDMRAEIICNVYANPPA--KVEWFR--DGTAI------T-----------LGGRIDMHVS--SEKHSLLVRHIKDTDFGN  119 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~~--~~~w~~--~~~~~------~-----------~~~~~~~~~~--~~~~~l~i~~~~~~d~g~  119 (245)
                      +|+++.|.|.+.|....  -+.|++  -+..+      .           ...++.+..+  .....|++.+++.+|.+.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            48899999999876443  577875  11111      1           1234555433  334578999999999999


Q ss_pred             EEEEEEeC
Q psy12131        120 YMCQASNN  127 (245)
Q Consensus       120 y~C~~~n~  127 (245)
                      |.|.....
T Consensus        81 YYCAr~~~   88 (103)
T d1oari_          81 YYCARMWY   88 (103)
T ss_dssp             EEEEEEEC
T ss_pred             EEeEEECC
Confidence            99976543

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.08  E-value=0.0032  Score=38.19  Aligned_cols=66  Identities=20%  Similarity=0.409  Sum_probs=43.9

Q ss_pred             EecCCCeEEEEEEEeecCC--C--eEEEEE--CCEEe------c----------cCCcEEEEec--CceeEEEEccCCCC
Q psy12131         60 HTAPDMRAEIICNVYANPP--A--KVEWFR--DGTAI------T----------LGGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~--~--~~~w~~--~~~~~------~----------~~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      .+.+|+.+.|.|.+.|...  .  .+.|++  -+..+      .          ...++.+..+  .....|+|.+++.+
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~e   90 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTS   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccccc
Confidence            4678999999999987532  2  456875  11100      0          1235555443  33457999999999


Q ss_pred             CCeEEEEEEE
Q psy12131        116 DFGNYMCQAS  125 (245)
Q Consensus       116 d~g~y~C~~~  125 (245)
                      |.+.|.|-..
T Consensus        91 DtAvYyCAr~  100 (126)
T d1etzb1          91 DTATYHCARR  100 (126)
T ss_dssp             GCEEEEEEEE
T ss_pred             ccceEEEEEe
Confidence            9999999754

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.05  E-value=0.0015  Score=39.62  Aligned_cols=69  Identities=14%  Similarity=0.405  Sum_probs=45.6

Q ss_pred             eEEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ec-----------cCCcEEEEec--CceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      ...+.+|+++.|.|.+.|....  .+.|++  .+..      +.           ...++.+..+  .....|++.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~   88 (130)
T d1rzga1           9 AEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRS   88 (130)
T ss_dssp             CEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCC
Confidence            3457889999999999876433  577776  1110      11           1234555433  2345688999999


Q ss_pred             CCCeEEEEEEEe
Q psy12131        115 TDFGNYMCQASN  126 (245)
Q Consensus       115 ~d~g~y~C~~~n  126 (245)
                      +|.+.|.|-...
T Consensus        89 eDtA~YYCAr~~  100 (130)
T d1rzga1          89 EDTAVFYCASPY  100 (130)
T ss_dssp             GGCEEEEEEECC
T ss_pred             CccEEEEEEEec
Confidence            999999998643

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.04  E-value=0.0078  Score=36.34  Aligned_cols=68  Identities=19%  Similarity=0.414  Sum_probs=46.5

Q ss_pred             EEecCCCeEEEEEEEeecCCC--eEEEEE--C--------------CEEe-c--cCCcEEEEec--CceeEEEEccCCCC
Q psy12131         59 IHTAPDMRAEIICNVYANPPA--KVEWFR--D--------------GTAI-T--LGGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~--------------~~~~-~--~~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      ..+.+|+.+.|.|.+.|....  .+.|++  -              +... .  ...++.+..+  .....|++.+++.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~e   89 (128)
T d2nxyd1          10 EVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSD   89 (128)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeecccc
Confidence            447889999999999986544  466765  1              1110 0  1245555543  34567889999999


Q ss_pred             CCeEEEEEEEe
Q psy12131        116 DFGNYMCQASN  126 (245)
Q Consensus       116 d~g~y~C~~~n  126 (245)
                      |.+.|.|....
T Consensus        90 DTA~YYCAr~~  100 (128)
T d2nxyd1          90 DTAVYFCAGVY  100 (128)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CceEEEEeEEe
Confidence            99999998664

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.0043  Score=36.73  Aligned_cols=91  Identities=9%  Similarity=-0.092  Sum_probs=43.1

Q ss_pred             CCCCccccCccccCCCeeEEEEEeCCCCCceEE-EEEEEeecCCCCeEEEeeCCCCCCCcce-eeeEEEecCCCCCceEE
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQVDTYSGIIQY-LLKFREREELTPWRNIVIPSDGSLAGPI-YTQSYNITGLQLFTQYE  218 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~y~  218 (245)
                      |..|.+........|..++|+|.+.+..|...- +.||++..   ................. ....+.+.--..++.-.
T Consensus         2 P~~P~I~~~~~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~---~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~   78 (109)
T d1vcaa1           2 PKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDH---LMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKV   78 (109)
T ss_dssp             CSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTE---EEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCE
T ss_pred             CCCCEEecCCCccCCCeEEEEeEeCCcCCCCceEEEEeccCc---eeeccccccccccCCcceeeEEEEccCChHHCCcE
Confidence            445555544556789999999999554333211 22443322   11111111111111111 12334443332233335


Q ss_pred             EEEEEEecCCCCCCCc
Q psy12131        219 ASVLAKNRFGWSRPSK  234 (245)
Q Consensus       219 ~~v~a~N~~G~~~~s~  234 (245)
                      |+|.|.|..+......
T Consensus        79 ltC~a~~~~~~~~~~~   94 (109)
T d1vcaa1          79 LVCRAKLHIDEMDSVP   94 (109)
T ss_dssp             EEEEEEECSCCCTTSC
T ss_pred             EEEEEEcCcCCccccc
Confidence            5666999988766554

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.01  E-value=0.0047  Score=36.85  Aligned_cols=68  Identities=19%  Similarity=0.424  Sum_probs=45.8

Q ss_pred             eEEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ec-----------cCCcEEEEe--cCceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------IT-----------LGGRIDMHV--SSEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~-----------~~~~~~~~~--~~~~~~l~i~~~~~  114 (245)
                      ...+.+|+.+.|.|.+.|....  .+.|++  -+..      +.           ...++.+..  ......|++++++.
T Consensus         9 ~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~   88 (120)
T d1ad9b1           9 AEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRS   88 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCC
Confidence            3457889999999999876443  567765  1110      11           123455443  33456789999999


Q ss_pred             CCCeEEEEEEE
Q psy12131        115 TDFGNYMCQAS  125 (245)
Q Consensus       115 ~d~g~y~C~~~  125 (245)
                      +|.+.|.|...
T Consensus        89 eDTAvYYCAr~   99 (120)
T d1ad9b1          89 EDTAFYFCARE   99 (120)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEEEc
Confidence            99999999754

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.01  E-value=0.004  Score=37.34  Aligned_cols=68  Identities=18%  Similarity=0.394  Sum_probs=45.5

Q ss_pred             EEecCCCeEEEEEEEeecCCC--eEEEEEC--CEE------ec-----------cCCcEEEEec--CceeEEEEccCCCC
Q psy12131         59 IHTAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~--~~~w~~~--~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      ..+.+|+.+.|.|.+.|....  -+.|++-  +..      +.           ...++.+..+  .....|+|++++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence            346789999999999875432  4677651  111      11           1235555443  33457999999999


Q ss_pred             CCeEEEEEEEe
Q psy12131        116 DFGNYMCQASN  126 (245)
Q Consensus       116 d~g~y~C~~~n  126 (245)
                      |.+.|.|....
T Consensus        90 DtAvYYCAr~~  100 (121)
T d1ol0a_          90 DTAVYYCAREP  100 (121)
T ss_dssp             GCEEEEEEECC
T ss_pred             cceEEEEEEec
Confidence            99999997553

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.00  E-value=0.0063  Score=36.70  Aligned_cols=68  Identities=18%  Similarity=0.424  Sum_probs=45.6

Q ss_pred             EEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ec-----------cCCcEEEEec--CceeEEEEccCCCC
Q psy12131         59 IHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      ..+++|+.+.|.|.+.|....  -+.|++  -+..      +.           ...++.+..+  .....|++.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~e   89 (127)
T d2fx7h1          10 EVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPE   89 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcc
Confidence            446789999999999886443  467765  1111      10           1235555433  33457899999999


Q ss_pred             CCeEEEEEEEe
Q psy12131        116 DFGNYMCQASN  126 (245)
Q Consensus       116 d~g~y~C~~~n  126 (245)
                      |.+.|.|....
T Consensus        90 DTavYYCAR~~  100 (127)
T d2fx7h1          90 DTAVYYCAREG  100 (127)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEEeecc
Confidence            99999997553

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.98  E-value=0.0048  Score=37.00  Aligned_cols=68  Identities=16%  Similarity=0.344  Sum_probs=45.8

Q ss_pred             eEEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ec-----------cCCcEEEEec--CceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      ...+.+|+++.|.|.+.|....  -+.|++  .+..      +.           ...++.+..+  .....|++++++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~   88 (124)
T d1yedb1           9 PELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKS   88 (124)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCG
T ss_pred             CceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCC
Confidence            3457789999999999886443  477765  1110      11           1235555433  3456789999999


Q ss_pred             CCCeEEEEEEE
Q psy12131        115 TDFGNYMCQAS  125 (245)
Q Consensus       115 ~d~g~y~C~~~  125 (245)
                      +|.+.|.|...
T Consensus        89 eDTAvYYCAR~   99 (124)
T d1yedb1          89 EDSAVYFCTRW   99 (124)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CcceEEEeccc
Confidence            99999999754

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=96.95  E-value=0.0053  Score=36.55  Aligned_cols=68  Identities=16%  Similarity=0.352  Sum_probs=44.7

Q ss_pred             eEEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ec-----------cCCcEEEEe--cCceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------IT-----------LGGRIDMHV--SSEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~-----------~~~~~~~~~--~~~~~~l~i~~~~~  114 (245)
                      ...+.+|+.+.|.|.+.|....  -+.|++  .|..      +.           ...++.+..  ......|.|.+++.
T Consensus         9 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~   88 (118)
T d1ct8b1           9 AVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTT   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCC
Confidence            3457889999999999875432  566765  1111      11           112444443  23345788999999


Q ss_pred             CCCeEEEEEEE
Q psy12131        115 TDFGNYMCQAS  125 (245)
Q Consensus       115 ~d~g~y~C~~~  125 (245)
                      +|.+.|.|...
T Consensus        89 eDtAvYYCAr~   99 (118)
T d1ct8b1          89 EDSAIYYCARY   99 (118)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeee
Confidence            99999999654

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.95  E-value=0.012  Score=35.68  Aligned_cols=70  Identities=19%  Similarity=0.417  Sum_probs=47.0

Q ss_pred             eEEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------e-----------ccCCcEEEEec--CceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------I-----------TLGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~-----------~~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      ...+.+|+++.|.|.+.|....  .+.|++  .+..      +           ....++.+..+  .....|++.+++.
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~   87 (133)
T d1rzfh1           8 AEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRS   87 (133)
T ss_dssp             CEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCC
Confidence            3457889999999999876443  466765  1110      1           11245555443  3456788999999


Q ss_pred             CCCeEEEEEEEeC
Q psy12131        115 TDFGNYMCQASNN  127 (245)
Q Consensus       115 ~d~g~y~C~~~n~  127 (245)
                      +|.+.|.|.....
T Consensus        88 eDtA~YYCAr~~~  100 (133)
T d1rzfh1          88 DDTAVYYCASNSI  100 (133)
T ss_dssp             GGCEEEEEEEEEC
T ss_pred             CCCEEEEeeeccC
Confidence            9999999966543

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=96.95  E-value=0.0031  Score=37.80  Aligned_cols=67  Identities=21%  Similarity=0.353  Sum_probs=45.1

Q ss_pred             EecCCCeEEEEEEEeecCC--C--eEEEEEC--CEE------ecc----------CCcEEEEe--cCceeEEEEccCCCC
Q psy12131         60 HTAPDMRAEIICNVYANPP--A--KVEWFRD--GTA------ITL----------GGRIDMHV--SSEKHSLLVRHIKDT  115 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~--~--~~~w~~~--~~~------~~~----------~~~~~~~~--~~~~~~l~i~~~~~~  115 (245)
                      .+.+|+++.|.|.+.|...  .  -+.|++-  +..      +..          ..++.+..  ......|+|.+++.+
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~e   90 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNE   90 (120)
T ss_dssp             EECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeecc
Confidence            4678999999999987643  2  4778761  111      111          13555543  233457899999999


Q ss_pred             CCeEEEEEEEe
Q psy12131        116 DFGNYMCQASN  126 (245)
Q Consensus       116 d~g~y~C~~~n  126 (245)
                      |.+.|.|....
T Consensus        91 DtAvYYCAr~~  101 (120)
T d1ai1h1          91 DTAMYYCSREN  101 (120)
T ss_dssp             GCEEEEEEEEE
T ss_pred             ceeEEEEEecC
Confidence            99999997543

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.95  E-value=0.0014  Score=38.45  Aligned_cols=65  Identities=18%  Similarity=0.406  Sum_probs=42.1

Q ss_pred             ecCCCeEEEEEEEeecCC--CeEEEEEC--CEE------ec----------cCCcEEEEec--CceeEEEEccCCCCCCe
Q psy12131         61 TAPDMRAEIICNVYANPP--AKVEWFRD--GTA------IT----------LGGRIDMHVS--SEKHSLLVRHIKDTDFG  118 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~~~~--~~~~w~~~--~~~------~~----------~~~~~~~~~~--~~~~~l~i~~~~~~d~g  118 (245)
                      +++|+.+.|.|.+.|...  -.+.|++-  +..      +.          ...++.+..+  .....|+|.+++.+|.+
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtA   84 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTA   84 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCS
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccce
Confidence            578999999999876533  35677761  110      11          1235555443  33457899999999999


Q ss_pred             EEEEEEE
Q psy12131        119 NYMCQAS  125 (245)
Q Consensus       119 ~y~C~~~  125 (245)
                      .|.|...
T Consensus        85 vYyCA~~   91 (107)
T d1sjva_          85 VYYCYTH   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             eeeEecc
Confidence            9999653

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.92  E-value=0.0036  Score=37.70  Aligned_cols=68  Identities=18%  Similarity=0.307  Sum_probs=45.6

Q ss_pred             EEecCCCeEEEEEEEeecCCC--eEEEEEC--CEE------ec-----------cCCcEEEEec--CceeEEEEccCCCC
Q psy12131         59 IHTAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~--~~~w~~~--~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      -.+.+|+.+.|.|.+.|....  .+.|++-  +..      +.           ...++.+..+  .....|+|++++.+
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~e   89 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE   89 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCc
Confidence            346789999999999875432  5777761  111      11           1235555432  34567899999999


Q ss_pred             CCeEEEEEEEe
Q psy12131        116 DFGNYMCQASN  126 (245)
Q Consensus       116 d~g~y~C~~~n  126 (245)
                      |.+.|.|....
T Consensus        90 DTAvYYCAr~~  100 (125)
T d1op3h1          90 DTAIYYCARKG  100 (125)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceeEeEeecc
Confidence            99999997653

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.90  E-value=0.0092  Score=35.77  Aligned_cols=68  Identities=16%  Similarity=0.335  Sum_probs=45.5

Q ss_pred             EEecCCCeEEEEEEEeecCCC--eEEEEEC--CE--E----ec-----------cCCcEEEEec--CceeEEEEccCCCC
Q psy12131         59 IHTAPDMRAEIICNVYANPPA--KVEWFRD--GT--A----IT-----------LGGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~--~~~w~~~--~~--~----~~-----------~~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      ..+.+|+++.|.|.+.|....  .+.|++-  +.  +    +.           ...++.+..+  .....|++++++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~e   89 (122)
T d1bz7b1          10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSE   89 (122)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeeccc
Confidence            346789999999999876443  4677661  11  0    11           1245555433  34457889999999


Q ss_pred             CCeEEEEEEEe
Q psy12131        116 DFGNYMCQASN  126 (245)
Q Consensus       116 d~g~y~C~~~n  126 (245)
                      |.+.|.|....
T Consensus        90 DTAvYYCAr~~  100 (122)
T d1bz7b1          90 DTAIYYCTRGG  100 (122)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CceEEEeecCC
Confidence            99999997643

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.0011  Score=37.23  Aligned_cols=55  Identities=16%  Similarity=0.514  Sum_probs=40.3

Q ss_pred             ecCCCeEEEEEEEeecCCCeEEEEECCEEeccCCcEEEEecCceeEEEEccCCC-CCCeEEEEEEEe
Q psy12131         61 TAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKD-TDFGNYMCQASN  126 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~n  126 (245)
                      ...|..|.|.|...+.  ..|.|.+++..+....         ...|.+.++.. ++.|.|.|....
T Consensus        11 SISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~---------~~~L~L~~FSE~e~SGyY~C~~~~   66 (100)
T d1jbja2          11 SISGTSVELTCPLDSD--ENLKWEKNGQELPQKH---------DKHLVLQDFSEVEDSGYYVCYTPA   66 (100)
T ss_dssp             EEETTEEEEECSSCCC--TTCEEEETTEEECSCC---------CSEEEEESCCTTTSCEEEEEECSS
T ss_pred             EEeCCEEEEECCCCCC--CceEEeeccccCCCCC---------CcEEEEccccccccCcceEEecCC
Confidence            4469999999997643  4699999998877532         12466777655 789999997444

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.89  E-value=0.011  Score=35.51  Aligned_cols=68  Identities=18%  Similarity=0.378  Sum_probs=45.5

Q ss_pred             EEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ec-----------cCCcEEEEec--CceeEEEEccCCCC
Q psy12131         59 IHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKDT  115 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~~  115 (245)
                      ..+.+|+.+.|.|.+.|....  -+.|++  -+..      +.           ...++.+..+  .....|++.+++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~e   89 (126)
T d1dfbh1          10 GLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAE   89 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccC
Confidence            346789999999999876443  567765  1110      11           1235555433  33457899999999


Q ss_pred             CCeEEEEEEEe
Q psy12131        116 DFGNYMCQASN  126 (245)
Q Consensus       116 d~g~y~C~~~n  126 (245)
                      |.+.|.|....
T Consensus        90 DtavYYCAr~~  100 (126)
T d1dfbh1          90 DMALYYCVKGR  100 (126)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEEEecc
Confidence            99999997543

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.86  E-value=0.0013  Score=40.32  Aligned_cols=80  Identities=21%  Similarity=0.321  Sum_probs=45.9

Q ss_pred             CCeEEeec-ceEEecCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEE---EEe-----cC---ceeEEEEccCCC
Q psy12131         49 PPEVSVEK-QWIHTAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRID---MHV-----SS---EKHSLLVRHIKD  114 (245)
Q Consensus        49 ~p~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~---~~~-----~~---~~~~l~i~~~~~  114 (245)
                      ||.+...+ .......+..++|.|.+.+..+.  .+.|++++..+..+....   ...     ++   ..+.|.|..-..
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W   83 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFW   83 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHH
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHh
Confidence            55555432 22223446788999999986433  799999998775321100   000     00   124566655443


Q ss_pred             CCCe-EEEEEEEeCC
Q psy12131        115 TDFG-NYMCQASNNL  128 (245)
Q Consensus       115 ~d~g-~y~C~~~n~~  128 (245)
                      .+.| .|+|.+....
T Consensus        84 ~~~g~~ytC~V~H~~   98 (127)
T d1ogae2          84 QNPRNHFRCQVQFYG   98 (127)
T ss_dssp             TCTTCEEEEEEEECC
T ss_pred             CCCCCEEEEEEEECC
Confidence            3544 7999998753

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.86  E-value=0.0046  Score=37.38  Aligned_cols=67  Identities=19%  Similarity=0.390  Sum_probs=44.8

Q ss_pred             EecCCCeEEEEEEEeecCCC--eEEEEEC--CEE------ec-----------cCCcEEEEec--CceeEEEEccCCCCC
Q psy12131         60 HTAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKDTD  116 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~~--~~~w~~~--~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~~d  116 (245)
                      .+.+|+.+.|.|.+.|....  -+.|++-  +..      +.           ...++.+..+  .....|++++++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~eD   90 (127)
T d2fb4h1          11 VVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPED   90 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeecc
Confidence            46789999999999875432  4667651  110      11           1234555433  345678999999999


Q ss_pred             CeEEEEEEEe
Q psy12131        117 FGNYMCQASN  126 (245)
Q Consensus       117 ~g~y~C~~~n  126 (245)
                      .+.|.|....
T Consensus        91 TA~YYCAr~~  100 (127)
T d2fb4h1          91 TGVYFCARDG  100 (127)
T ss_dssp             CEEEEEEEEC
T ss_pred             eeEEEEEEec
Confidence            9999997654

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.0005  Score=37.90  Aligned_cols=35  Identities=23%  Similarity=0.353  Sum_probs=28.0

Q ss_pred             eEEEeccCCCCCEEEEEEEEcCCCCceeeEEEEEE
Q psy12131         12 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV   46 (245)
Q Consensus        12 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v   46 (245)
                      .|.|..+-++|.|.|+|.|.-..+...+.++.+.|
T Consensus        69 vLhF~pvl~sDnGsYrCSanf~s~vieSHSvti~V  103 (104)
T d1xaua_          69 VLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHV  103 (104)
T ss_dssp             EEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEeeeeeecCCCceEEecCCChhheecceEEEEe
Confidence            38899999999999999999776665555666554

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.83  E-value=0.0028  Score=37.46  Aligned_cols=68  Identities=16%  Similarity=0.175  Sum_probs=40.5

Q ss_pred             EecCCCeEEEEEEEeecCCC--eEEEEECCEEeccCCcEE--EEecCc---eeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         60 HTAPDMRAEIICNVYANPPA--KVEWFRDGTAITLGGRID--MHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~--~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      ....+..+.|.|.+.+..+.  .+.|.+++..+.......  ...++.   .+.|.+..-..  ...|+|.+.....
T Consensus        20 e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s~   94 (107)
T d1hxmb2          20 ETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHENN   94 (107)
T ss_dssp             GGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEETTS
T ss_pred             HHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEECCC
Confidence            34567789999999986443  799999887665432111  111111   23444443222  2369999988643

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.83  E-value=0.0045  Score=36.97  Aligned_cols=69  Identities=17%  Similarity=0.316  Sum_probs=45.5

Q ss_pred             eEEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ec-------------cCCcEEEEec--CceeEEEEccC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------IT-------------LGGRIDMHVS--SEKHSLLVRHI  112 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~-------------~~~~~~~~~~--~~~~~l~i~~~  112 (245)
                      ...+.+|+.+.|.|.+.|....  .+.|++  -+..      +.             ...++.+..+  .....|++.++
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L   88 (121)
T d1nfdf1           9 GDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRL   88 (121)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESC
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceeccc
Confidence            3457899999999999986543  467876  1211      11             1123333332  33456899999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12131        113 KDTDFGNYMCQASN  126 (245)
Q Consensus       113 ~~~d~g~y~C~~~n  126 (245)
                      +.+|.+.|.|-...
T Consensus        89 ~~eDTAvYYCAr~~  102 (121)
T d1nfdf1          89 RVDDTAIYYCTRAG  102 (121)
T ss_dssp             CGGGCEECEEEEEE
T ss_pred             CCCcceEEEEeccC
Confidence            99999999997543

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.82  E-value=0.0038  Score=37.44  Aligned_cols=68  Identities=18%  Similarity=0.329  Sum_probs=45.8

Q ss_pred             EEecCCCeEEEEEEEeecCCC--eEEEEEC--CEE------ec-------------cCCcEEEEec--CceeEEEEccCC
Q psy12131         59 IHTAPDMRAEIICNVYANPPA--KVEWFRD--GTA------IT-------------LGGRIDMHVS--SEKHSLLVRHIK  113 (245)
Q Consensus        59 ~~~~~g~~~~l~C~~~~~~~~--~~~w~~~--~~~------~~-------------~~~~~~~~~~--~~~~~l~i~~~~  113 (245)
                      ..+.+|+.+.|.|.+.|....  .+.|++-  +..      +.             ...++.+..+  .....|++.+++
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~   89 (122)
T d1q9rb1          10 GLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR   89 (122)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeec
Confidence            346789999999999876443  5778751  110      10             0135555432  334578999999


Q ss_pred             CCCCeEEEEEEEe
Q psy12131        114 DTDFGNYMCQASN  126 (245)
Q Consensus       114 ~~d~g~y~C~~~n  126 (245)
                      .+|.+.|.|....
T Consensus        90 ~eDTAvYYCar~~  102 (122)
T d1q9rb1          90 AEDSATYYCARDH  102 (122)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             cCcceEEEEEecC
Confidence            9999999998654

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=96.80  E-value=0.015  Score=34.55  Aligned_cols=68  Identities=16%  Similarity=0.351  Sum_probs=45.7

Q ss_pred             EecCCCeEEEEEEEeecCCC--eEEEEEC--CEE------ecc----------CCcEEEEec--CceeEEEEccCCCCCC
Q psy12131         60 HTAPDMRAEIICNVYANPPA--KVEWFRD--GTA------ITL----------GGRIDMHVS--SEKHSLLVRHIKDTDF  117 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~~--~~~w~~~--~~~------~~~----------~~~~~~~~~--~~~~~l~i~~~~~~d~  117 (245)
                      .+.+|+++.|.|.+.|....  -+.|++-  +..      +..          ..++.+..+  .....|+|.++..+|.
T Consensus        11 ~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDt   90 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDT   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcc
Confidence            46789999999999986543  5778761  111      111          124554432  3345789999999999


Q ss_pred             eEEEEEEEeC
Q psy12131        118 GNYMCQASNN  127 (245)
Q Consensus       118 g~y~C~~~n~  127 (245)
                      +.|.|.....
T Consensus        91 A~YyCAr~~~  100 (118)
T d1lo4h1          91 AIYYCARGTS  100 (118)
T ss_dssp             EEEEEEEEET
T ss_pred             eEEEecccCC
Confidence            9999975543

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.77  E-value=0.0052  Score=37.10  Aligned_cols=66  Identities=20%  Similarity=0.395  Sum_probs=44.6

Q ss_pred             EecCCCeEEEEEEEeecCC---CeEEEEE--CCEEe------cc----------CCcEEEEe--cCceeEEEEccCCCCC
Q psy12131         60 HTAPDMRAEIICNVYANPP---AKVEWFR--DGTAI------TL----------GGRIDMHV--SSEKHSLLVRHIKDTD  116 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~---~~~~w~~--~~~~~------~~----------~~~~~~~~--~~~~~~l~i~~~~~~d  116 (245)
                      .+.+|+.+.|.|.+.|...   -.+.|++  .|..+      ..          ..++.+..  ......|+|.+++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eD   90 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTED   90 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccccc
Confidence            4678999999999998644   2578876  22211      11          12333332  3445679999999999


Q ss_pred             CeEEEEEEE
Q psy12131        117 FGNYMCQAS  125 (245)
Q Consensus       117 ~g~y~C~~~  125 (245)
                      .+.|.|...
T Consensus        91 tAvYyCAr~   99 (127)
T d3cx5j1          91 TATYYCARS   99 (127)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeeee
Confidence            999999753

>d1xzwa1 b.1.12.1 (A:1-119) Purple acid phosphatase, N-terminal domain {Sweet potato (Ipomoea batatas) [TaxId: 4120]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Purple acid phosphatase, N-terminal domain
family: Purple acid phosphatase, N-terminal domain
domain: Purple acid phosphatase, N-terminal domain
species: Sweet potato (Ipomoea batatas) [TaxId: 4120]

Probab=96.77  E-value=0.0043  Score=37.38  Aligned_cols=81  Identities=11%  Similarity=0.127  Sum_probs=45.8

Q ss_pred             CCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCC---CCCcceeeeEEEecCCCCCceEEEEEEEEecCCCC
Q psy12131        154 GPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDG---SLAGPIYTQSYNITGLQLFTQYEASVLAKNRFGWS  230 (245)
Q Consensus       154 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~l~~~~~y~~~v~a~N~~G~~  230 (245)
                      ...++.|+|......+.. -.++|-... ...+.........   ............|.+|.+++.|.|||      |.+
T Consensus        36 ~~tsm~VsW~T~~~~~~~-~~V~yG~~~-~~~~~~a~g~s~~~~~~~~~~~~~H~v~LtgL~P~T~Y~YrV------G~~  107 (119)
T d1xzwa1          36 EGRGVIISWTTPYDKAGA-NKVFYWSEN-SKSQKRAMGTVVTYKYYNYTSAFIHHCTIKDLEYDTKYYYRL------GFG  107 (119)
T ss_dssp             SSSCEEEEEEESSCCTTT-TEEEEEETT-CCCCEEEECEEECCEETTEECCEEEEEEECCCCTTCEEEEEE------CCG
T ss_pred             CCCEEEEEEECCCCCCCC-CEEEEcCCC-CCCccEEEEEEEEeecccccCCeEEEEEECCCCCCCEEEEEE------CCC
Confidence            356899999983321111 134443332 2222222111000   01122344678999999999999997      334


Q ss_pred             CCCcceEEecCC
Q psy12131        231 RPSKAYVFATEG  242 (245)
Q Consensus       231 ~~s~~~~~~t~~  242 (245)
                      .+|....|+|+|
T Consensus       108 ~~S~~~~F~T~P  119 (119)
T d1xzwa1         108 DAKRQFWFVTPP  119 (119)
T ss_dssp             GGCEEEEEECCC
T ss_pred             CccceEEEeCCC
Confidence            478888999875

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.74  E-value=0.0086  Score=35.97  Aligned_cols=68  Identities=18%  Similarity=0.312  Sum_probs=45.1

Q ss_pred             eEEecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ec-----------cCCcEEEEec--CceeEEEEccCCC
Q psy12131         58 WIHTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------IT-----------LGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        58 ~~~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~-----------~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      ...+.+|+.+.|.|.+.|....  .+.|++  -+..      +.           ...++.+..+  .....|+++++..
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~   88 (124)
T d2b1hh1           9 AEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKP   88 (124)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecccc
Confidence            3456789999999999986543  467765  1110      11           1234554432  3346789999999


Q ss_pred             CCCeEEEEEEE
Q psy12131        115 TDFGNYMCQAS  125 (245)
Q Consensus       115 ~d~g~y~C~~~  125 (245)
                      +|.+.|.|...
T Consensus        89 eDTA~YYCAR~   99 (124)
T d2b1hh1          89 SDTALYYCARL   99 (124)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccceEEEEeec
Confidence            99999999543

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.0013  Score=39.52  Aligned_cols=32  Identities=13%  Similarity=0.203  Sum_probs=24.3

Q ss_pred             cceEEEee----cceEEEeccCCCCCEEEEEEEEcC
Q psy12131          2 KEIELLYN----RESLDLDRVTLKLAGLYQCIASNN   33 (245)
Q Consensus         2 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~~~   33 (245)
                      +|+.+...    ...|.|.+++++|+|.|.|.+...
T Consensus        60 ~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          60 ARFQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISL   95 (114)
T ss_dssp             TTEEEEECTTSSEEEEEESSCCGGGCEEEEEEEECS
T ss_pred             CcceEEEeCCCCEEEEEECccCcCCCeEEEEEEEeC
Confidence            45555542    245999999999999999988754

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00071  Score=44.43  Aligned_cols=81  Identities=11%  Similarity=0.048  Sum_probs=35.0

Q ss_pred             CCCCccccCccccCCCeeEEEEEe--CCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEE
Q psy12131        141 PNIPVFQKSSRRLGPDGYRLVWQV--DTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYE  218 (245)
Q Consensus       141 ~~~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~  218 (245)
                      |.+|...... .....++.|+|.+  ..++.+.+|.++|+... ...+...    .         ..+....+.....|.
T Consensus         3 Ps~P~~~~~~-~~s~~si~vsW~pP~~~ng~i~~Y~V~~~~~~-~~~~~~~----~---------~~~~~~~~~~~~~y~   67 (196)
T d2dtge2           3 PSVPLDPISV-SNSSSQIILKWKPPSDPNGNITHYLVFWERQA-EDSELFE----L---------DYCLKGLKLPSRTWS   67 (196)
T ss_dssp             CCCCEEEEEE-ECSSSCEEEEEECCCCSSSSCSEEECCEEEEC-CCCSCTT----C---------SSSCSCCCCCC----
T ss_pred             CcCCcCCEEE-eccCCEEEEEEECCCCCCCcEEEEEEEEEcCC-CCCceeE----E---------eeEEeccccceeEEE
Confidence            5556554433 3678899999998  33568899999988765 2222110    0         112223456778899


Q ss_pred             EEEEEEecCCCCCCCcce
Q psy12131        219 ASVLAKNRFGWSRPSKAY  236 (245)
Q Consensus       219 ~~v~a~N~~G~~~~s~~~  236 (245)
                      +++.|.|..|.+..+...
T Consensus        68 ~~v~~~~~~~~~~~~~~~   85 (196)
T d2dtge2          68 PPFESEDSQKHNQSEYED   85 (196)
T ss_dssp             ------------------
T ss_pred             EEEEEEcCCccccCcCCc
Confidence            999999999887665533

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.018  Score=32.78  Aligned_cols=78  Identities=13%  Similarity=0.152  Sum_probs=49.1

Q ss_pred             ccccCCCeeEEEEEeCCCCCceEEEEEEEeecCCCCeEEEeeCCCCCCCcceeeeEEEecCCCCCceEEEEEEE-EecCC
Q psy12131        150 SRRLGPDGYRLVWQVDTYSGIIQYLLKFREREELTPWRNIVIPSDGSLAGPIYTQSYNITGLQLFTQYEASVLA-KNRFG  228 (245)
Q Consensus       150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~a-~N~~G  228 (245)
                      ..+..|..|+|.|.....  ...|.+. ++.. ..... .....        ....|.|..+...+.+.|+|.. .+...
T Consensus        13 ~~V~~G~~VTL~C~~~~~--~~~f~L~-Keg~-~~~~~-~~~~~--------~~a~F~i~~v~~~~~G~Y~C~~~~~~~~   79 (93)
T d1olla2          13 PEVISGEKVTFYCRLDTA--TSMFLLL-KEGR-SSHVQ-RGYGK--------VQAEFPLGPVTTAHRGTYRCFGSYNNHA   79 (93)
T ss_dssp             SEEETTCEEEEEEECSSS--CSEEEEE-EESS-SCEEE-EEECS--------SEEEEEEEECCGGGCEEEEEECEEETTE
T ss_pred             CcccCCCcEEEEECCCCC--CCEEEEE-ECCC-cccee-ecCCC--------ceeEEEecccChhcCceEEEEeECCCCC
Confidence            345779999999997443  3356544 4432 11111 11111        1267999999988888888864 34445


Q ss_pred             CCCCCcceEEec
Q psy12131        229 WSRPSKAYVFAT  240 (245)
Q Consensus       229 ~~~~s~~~~~~t  240 (245)
                      .+.+|+.++...
T Consensus        80 wS~~SdpLeL~V   91 (93)
T d1olla2          80 WSFPSEPVKLLV   91 (93)
T ss_dssp             ECCCCCCEEEEE
T ss_pred             cCCCCCCEEEEe
Confidence            788999887643

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.67  E-value=0.0068  Score=36.80  Aligned_cols=66  Identities=20%  Similarity=0.388  Sum_probs=44.7

Q ss_pred             EecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------e-------------ccCCcEEEEec--CceeEEEEccCCC
Q psy12131         60 HTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------I-------------TLGGRIDMHVS--SEKHSLLVRHIKD  114 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~-------------~~~~~~~~~~~--~~~~~l~i~~~~~  114 (245)
                      .+++|+.+.|.|.+.|....  -+.|++  -+..      +             ....++.+..+  .....|+++++++
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~~   90 (131)
T d3c2ah1          11 LVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLKT   90 (131)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceecccc
Confidence            46789999999999875443  567765  1111      0             01234555433  3445789999999


Q ss_pred             CCCeEEEEEEE
Q psy12131        115 TDFGNYMCQAS  125 (245)
Q Consensus       115 ~d~g~y~C~~~  125 (245)
                      +|.+.|.|...
T Consensus        91 eDTAvYYCAR~  101 (131)
T d3c2ah1          91 EDTAVYSCTTD  101 (131)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEEecc
Confidence            99999999765

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.0013  Score=39.44  Aligned_cols=31  Identities=23%  Similarity=0.163  Sum_probs=23.9

Q ss_pred             ceEEEeec--ceEEEeccCCCCCEEEEEEEEcC
Q psy12131          3 EIELLYNR--ESLDLDRVTLKLAGLYQCIASNN   33 (245)
Q Consensus         3 ~~~~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~   33 (245)
                      |+.....+  ..|+|.+++.+|+|.|.|.+...
T Consensus        67 rfs~~~~~~~~~L~I~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          67 RFSGKRLGDTFVLTLSDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEEECCCCChhcEEccCCCCCCEEEeEeEcCC
Confidence            45444433  45999999999999999988753

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.64  E-value=0.011  Score=33.24  Aligned_cols=62  Identities=11%  Similarity=0.190  Sum_probs=37.6

Q ss_pred             CeEEEEEEEeecCCC--eEEEEECCEEeccCCcEEEEecCceeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         65 MRAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        65 ~~~~l~C~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ..++|.|.+.+..+.  .+.|.+++..+..........++.-+.+.+..+  .....|+|.+....
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~--~~~~~yTC~V~H~~   77 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKY--EDSNSVTCSVQHDN   77 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEE--TTTTTCEEEEEETT
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEec--CCCCEEEEEEEECC
Confidence            345899999987544  788999998766543332222222222222233  34457999999864

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.63  E-value=0.0015  Score=39.26  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=21.3

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcC
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNN   33 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~   33 (245)
                      ..+|+|.+++.+|+|.|.|.+...
T Consensus        71 ~~sL~i~~~~~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          71 QSSLHITASQLSDSASYICVVSDR   94 (114)
T ss_dssp             EEEEEECSCCGGGCSEEEEEEECS
T ss_pred             ccccEEcccChhhCcccceeeecC
Confidence            456999999999999999998864

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.62  E-value=0.0013  Score=38.92  Aligned_cols=23  Identities=26%  Similarity=0.470  Sum_probs=19.9

Q ss_pred             cceEEEeccCCCCCEEEEEEEEc
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ...|+|.+++.+|+|.|.|.+.+
T Consensus        70 ~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1j1pl_          70 DFTLSINSVETEDFGMYFCQQAN   92 (107)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECS
T ss_pred             EEEEEEcccCcCCCEEEEEEcCC
Confidence            35699999999999999997654

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.62  E-value=0.0011  Score=39.30  Aligned_cols=23  Identities=17%  Similarity=0.223  Sum_probs=20.1

Q ss_pred             cceEEEeccCCCCCEEEEEEEEc
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ...|.|.+++.+|+|.|.|.+.+
T Consensus        70 ~~~L~I~~l~~~Dsa~YyCa~~~   92 (107)
T d1c5cl1          70 DYSLTISSLESEDFADYYCLQYA   92 (107)
T ss_dssp             EEEEEESSCCGGGCSEEEEEECS
T ss_pred             EEEEEEhhhcccCCeEEEEecCc
Confidence            35699999999999999997664

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.59  E-value=0.005  Score=36.60  Aligned_cols=67  Identities=21%  Similarity=0.422  Sum_probs=43.9

Q ss_pred             EecCCCeEEEEEEEeecCCC--eEEEEE--CCEE------ecc----------CCcEEEEe--cCceeEEEEccCCCCCC
Q psy12131         60 HTAPDMRAEIICNVYANPPA--KVEWFR--DGTA------ITL----------GGRIDMHV--SSEKHSLLVRHIKDTDF  117 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~------~~~----------~~~~~~~~--~~~~~~l~i~~~~~~d~  117 (245)
                      .+.+|+++.|.|.+.|....  .+.|++  .+..      +..          ..++.+..  ......|++++++.+|.
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDT   90 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDT   90 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCC
T ss_pred             eECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCC
Confidence            46789999999999876443  577876  1111      111          12333332  22345688999999999


Q ss_pred             eEEEEEEEe
Q psy12131        118 GNYMCQASN  126 (245)
Q Consensus       118 g~y~C~~~n  126 (245)
                      +.|.|....
T Consensus        91 AvYyCAr~~   99 (116)
T d1fn4b1          91 GTYYCTRDL   99 (116)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEeec
Confidence            999996544

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.58  E-value=0.0016  Score=38.60  Aligned_cols=24  Identities=21%  Similarity=0.189  Sum_probs=20.4

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEc
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      +...|.|.+++.+|+|.|.|.+..
T Consensus        69 ~~~~L~I~~l~~~DSa~YyCa~~~   92 (107)
T d1kcvl1          69 TDFTLTISSVQADDDADYYCGQSY   92 (107)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CeeecEEHhheecCCceEEEEecC
Confidence            345699999999999999997654

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.54  E-value=0.0022  Score=38.55  Aligned_cols=33  Identities=12%  Similarity=0.016  Sum_probs=24.4

Q ss_pred             cceEEEeec----ceEEEeccCCCCCEEEEEEEEcCC
Q psy12131          2 KEIELLYNR----ESLDLDRVTLKLAGLYQCIASNNI   34 (245)
Q Consensus         2 ~~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~~~   34 (245)
                      +|+.+..+.    .+|+|.+++.+|+|.|.|.+....
T Consensus        63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          63 GRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTLPP   99 (116)
T ss_dssp             TTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECTT
T ss_pred             eEEEEEecCceeEEeeeecCccccccccceeeEecCC
Confidence            355554322    369999999999999999877543

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0036  Score=36.71  Aligned_cols=68  Identities=15%  Similarity=0.158  Sum_probs=39.3

Q ss_pred             ecCCCeEEEEEEEeecCCC----eEEEEECCEEeccCCcEEEE-ecCc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         61 TAPDMRAEIICNVYANPPA----KVEWFRDGTAITLGGRIDMH-VSSE----KHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~~~~~----~~~w~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      +..+..++|.|.+.|..+.    .+.|.+++............ ..+.    .+.|.|..-.......|+|.+.+..
T Consensus        13 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~   89 (103)
T d1fp5a1          13 LFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPH   89 (103)
T ss_dssp             HHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             HhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECC
Confidence            4467788999999985432    67788877655433222211 1111    2344444332233568999999864

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.49  E-value=0.001  Score=38.37  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=20.4

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcC
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNN   33 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~   33 (245)
                      .+|.|.+++++|+|.|.|.+...
T Consensus        57 ~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1          57 VSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             EEEEECSCCGGGCEEEEEEEESS
T ss_pred             EeEEeeccccCcCccceeeEecC
Confidence            46999999999999999988754

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=96.49  E-value=0.0029  Score=37.46  Aligned_cols=22  Identities=18%  Similarity=0.307  Sum_probs=19.4

Q ss_pred             ceEEEeccCCCCCEEEEEEEEc
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ..|+|.+++++|+|.|.|.+..
T Consensus        72 ~~L~I~~~~~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          72 FTLTISRLEPEDFAVYYCQQYG   93 (108)
T ss_dssp             EEEEESSCCGGGCSEEEEEECS
T ss_pred             EEEEehHheecccEEEeeecCC
Confidence            4599999999999999997753

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.48  E-value=0.00096  Score=39.51  Aligned_cols=23  Identities=17%  Similarity=0.268  Sum_probs=20.1

Q ss_pred             cceEEEeccCCCCCEEEEEEEEc
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ..+|.|.+++.+|+|.|.|.+..
T Consensus        70 ~~~L~I~~~~~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          70 DFVFTIENTLSEDVGDYYCLQSF   92 (106)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECS
T ss_pred             eeeecccCCccccCEEEeEecCc
Confidence            45699999999999999997664

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.47  E-value=0.0015  Score=38.84  Aligned_cols=63  Identities=16%  Similarity=0.339  Sum_probs=0.0

Q ss_pred             EecCCCeEEEEEEEeecCCC--eEEEEE--CCEEecc-----------------CCcEEEE--ecCceeEEEEccCCCCC
Q psy12131         60 HTAPDMRAEIICNVYANPPA--KVEWFR--DGTAITL-----------------GGRIDMH--VSSEKHSLLVRHIKDTD  116 (245)
Q Consensus        60 ~~~~g~~~~l~C~~~~~~~~--~~~w~~--~~~~~~~-----------------~~~~~~~--~~~~~~~l~i~~~~~~d  116 (245)
                      .+.+|+++.|.|.+.|....  .+.|++  .+..+..                 ..++.+.  .......|++.+++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~eD   90 (117)
T d1b2wh1          11 VVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRPED   90 (117)
T ss_dssp             EECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccCCc


Q ss_pred             CeEEEE
Q psy12131        117 FGNYMC  122 (245)
Q Consensus       117 ~g~y~C  122 (245)
                      .+.|.|
T Consensus        91 TAvYYC   96 (117)
T d1b2wh1          91 TAVYYC   96 (117)
T ss_dssp             CEEEEC
T ss_pred             ceEEEE

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.44  E-value=0.0023  Score=37.83  Aligned_cols=23  Identities=13%  Similarity=0.172  Sum_probs=20.0

Q ss_pred             cceEEEeccCCCCCEEEEEEEEc
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ...|.|.+++.+|+|.|.|.+..
T Consensus        70 ~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1ospl1          70 DYTLSITSLQTEDVATYFCQQYW   92 (107)
T ss_dssp             SEEEEESSCCGGGCSEEEEEECS
T ss_pred             eEEeEEcccccccCCcEEEeecc
Confidence            35699999999999999997764

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.41  E-value=0.002  Score=38.11  Aligned_cols=23  Identities=13%  Similarity=0.249  Sum_probs=19.9

Q ss_pred             cceEEEeccCCCCCEEEEEEEEc
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ...|.|.+++++|+|.|.|.+..
T Consensus        69 ~~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          69 EFTLTISGLQFDDFATYHCQHYA   91 (106)
T ss_dssp             EEEEEEESCCGGGCSEEEEEEEC
T ss_pred             EEEEEEccccccCCCcEeeeeCC
Confidence            34599999999999999997664

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.39  E-value=0.0098  Score=34.66  Aligned_cols=68  Identities=16%  Similarity=0.197  Sum_probs=40.1

Q ss_pred             cCCCeEEEEEEEeec-CCC--eEEEEECCEEeccCCcEEEEecC----ceeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         62 APDMRAEIICNVYAN-PPA--KVEWFRDGTAITLGGRIDMHVSS----EKHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        62 ~~g~~~~l~C~~~~~-~~~--~~~w~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      ..+..+.|.|.+.+. |..  .+.|.+++..+...........+    ..+.|.|..-.......|+|.+.....
T Consensus        17 ~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          17 LSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSN   91 (102)
T ss_dssp             SCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred             cCCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCC
Confidence            356789999999995 442  57788776543321111111111    134566665554455679999987543

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.38  E-value=0.0062  Score=36.70  Aligned_cols=67  Identities=13%  Similarity=0.256  Sum_probs=40.9

Q ss_pred             cCCCeEEEEEEEeec-CC---CeEEEEECCEEeccCCcE--EEEecCc---eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         62 APDMRAEIICNVYAN-PP---AKVEWFRDGTAITLGGRI--DMHVSSE---KHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        62 ~~g~~~~l~C~~~~~-~~---~~~~w~~~~~~~~~~~~~--~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      ..+..+.|.|.+.+. |.   ..+.|.+++..+......  ....++.   .+.|.|..-.......|+|.+....
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTT
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECC
Confidence            457889999999885 32   478899999877543221  1122221   2344443332234457999999864

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.35  E-value=0.0025  Score=37.67  Aligned_cols=23  Identities=22%  Similarity=0.499  Sum_probs=19.9

Q ss_pred             cceEEEeccCCCCCEEEEEEEEc
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ...|.|.+++.+|+|.|.|....
T Consensus        70 ~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1d5il1          70 DYSLTISSLEYEDMGIYYCLQYD   92 (107)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECS
T ss_pred             EEEccccccCCcCCEEEEeeecc
Confidence            35699999999999999997654

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.35  E-value=0.001  Score=39.42  Aligned_cols=23  Identities=13%  Similarity=0.251  Sum_probs=20.2

Q ss_pred             cceEEEeccCCCCCEEEEEEEEc
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ..+|+|.+++++|+|.|.|.+..
T Consensus        69 ~~~L~I~~~~~~DsA~YyCa~~~   91 (106)
T d1a0ql1          69 DYSFSISNLEPEDIATYYCLQYY   91 (106)
T ss_dssp             EEEEEECSCCGGGCSEEEEEECS
T ss_pred             EeeeEehhhcccCCEeEEEEEeC
Confidence            35699999999999999998764

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.32  E-value=0.0034  Score=37.64  Aligned_cols=24  Identities=21%  Similarity=0.198  Sum_probs=20.5

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcC
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNN   33 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~   33 (245)
                      ...|+|.+++++|+|.|.|.+...
T Consensus        72 ~~~L~I~~~~~~Dsg~YyCa~~~~   95 (115)
T d1lp9e1          72 SFHLQKSSAQLSDSALYYCALFLA   95 (115)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEEC
T ss_pred             eEEeeccccccccCccceEEEEcC
Confidence            345999999999999999987654

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.32  E-value=0.0024  Score=38.30  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=19.8

Q ss_pred             cceEEEeccCCCCCEEEEEEEEc
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ...|+|.+++.+|+|.|.|.+..
T Consensus        78 ~~~L~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          78 RPFLSIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             SCEEEECSCCGGGCEEEEEEEEC
T ss_pred             eEEEeecccCCCCCcEEEEeEcC
Confidence            34599999999999999998763

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=96.32  E-value=0.0072  Score=34.97  Aligned_cols=28  Identities=18%  Similarity=0.408  Sum_probs=21.5

Q ss_pred             CCCeEEEEEEEeecCCC--eEEEEECCEEe
Q psy12131         63 PDMRAEIICNVYANPPA--KVEWFRDGTAI   90 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~~--~~~w~~~~~~~   90 (245)
                      ....++|.|.+.|..+.  .+.|.+++..+
T Consensus        13 ~~~~vtL~C~~~gFyP~~I~v~W~~ng~~~   42 (98)
T d1u58a1          13 REGGMRLRCFARDYYPADLEIRWWKDDGGG   42 (98)
T ss_dssp             SSSCEEEEEEEEEEBSSCEEEEEEEECSSS
T ss_pred             CCCcEEEEEEEEEEcCCCCEEEEEECCccc
Confidence            34578999999997554  79999987544

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0034  Score=36.81  Aligned_cols=68  Identities=16%  Similarity=0.176  Sum_probs=38.0

Q ss_pred             CCCeEEEEEEEeecCC--CeEEEEECCEEeccCCcEEEEecCc----eeEEEEccCCCCCCeEEEEEEEeCCcee
Q psy12131         63 PDMRAEIICNVYANPP--AKVEWFRDGTAITLGGRIDMHVSSE----KHSLLVRHIKDTDFGNYMCQASNNLGSS  131 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~--~~~~w~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~g~~  131 (245)
                      .+..+.|.|.+.+..+  ..+.|.+++..............++    .+.|.|..-.. ....|+|.+.+..+..
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   92 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GTQTYICNVNHKPSNT   92 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGG-GTCCCEEEEEEGGGTE
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECcccc-CCCeEEEEEEeCCCCE
Confidence            3677999999988644  3799977654321100000111111    24556654433 2457999999876543

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0027  Score=36.68  Aligned_cols=38  Identities=16%  Similarity=0.350  Sum_probs=27.8

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCC--CCceeeEEEEEEe
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNI--GESTSKNFIVNVI   47 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~~~l~v~   47 (245)
                      .+.+.|.+++..|+|.|+|......  ....+..+.|.|.
T Consensus        56 ~a~F~i~~v~~~~~G~Y~C~y~~~~~~~S~~Sd~leL~Vt   95 (96)
T d1ugna1          56 KGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVT   95 (96)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEE
T ss_pred             EEEEEEEecCHHHCCeEEEEEeCCCCCccccCCCEEEEEe
Confidence            3569999999999999999876432  1225666777664

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.26  E-value=0.0032  Score=37.47  Aligned_cols=23  Identities=22%  Similarity=0.271  Sum_probs=19.8

Q ss_pred             cceEEEeccCCCCCEEEEEEEEc
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ...|+|.+++++|++.|.|.+..
T Consensus        74 ~~~L~I~~~~~~DsA~YyCa~~~   96 (111)
T d2gsia1          74 DFTLNIHPVEEEDAATYYCSHIR   96 (111)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECS
T ss_pred             chhcccccccccCCceEEEEECC
Confidence            35699999999999999997654

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.26  E-value=0.002  Score=38.31  Aligned_cols=30  Identities=10%  Similarity=0.315  Sum_probs=24.6

Q ss_pred             cceEEEeecce----EEEeccCCCCCEEEEEEEE
Q psy12131          2 KEIELLYNRES----LDLDRVTLKLAGLYQCIAS   31 (245)
Q Consensus         2 ~~~~~~~~~~~----L~i~~~~~~d~G~Y~C~~~   31 (245)
                      +|+.++.+.+.    |+|.+++.+|++.|.|...
T Consensus        66 gR~tiSrD~s~nt~yL~m~~L~~eDTAvYYCAr~   99 (117)
T d1jpth1          66 DRATISADNSKNTAYLQMNSLRAEDTAVYYCARD   99 (117)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeEEEEeccccceEEecccccCCCCceEEEEeec
Confidence            68888876543    9999999999999999543

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.25  E-value=0.0042  Score=37.22  Aligned_cols=23  Identities=22%  Similarity=0.229  Sum_probs=20.4

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcC
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNN   33 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~   33 (245)
                      ..|.|.+++++|+|.|.|.+...
T Consensus        73 ~~L~I~~~~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          73 FHLTKPSAHMSDAAEYFCAVSES   95 (115)
T ss_dssp             CCEEESSCCGGGCEEEEEEEESS
T ss_pred             EEEeeccccccCCccceeeecCC
Confidence            35999999999999999998754

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.25  E-value=0.0026  Score=37.66  Aligned_cols=22  Identities=18%  Similarity=0.323  Sum_probs=19.3

Q ss_pred             ceEEEeccCCCCCEEEEEEEEc
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ..|+|.+++.+|+|.|.|.+.+
T Consensus        71 ~~L~i~~l~~~Dsa~YyCA~~~   92 (108)
T d1jhll_          71 FTLTISSLEPEDFAMYICQQHN   92 (108)
T ss_dssp             EEEEECSCCTTCCSEEEEEECS
T ss_pred             EEeEeeeeEeccceEEEEeeCC
Confidence            4699999999999999996554

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.25  E-value=0.0022  Score=37.96  Aligned_cols=23  Identities=13%  Similarity=0.192  Sum_probs=19.5

Q ss_pred             cceEEEeccCCCCCEEEEEEEEc
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ...|+|.+++++|+|.|.|.+..
T Consensus        70 ~~~L~I~~l~~~DsA~YyCa~~~   92 (107)
T d1tjgl1          70 EFTLTISTLRPEDFATYYCQQLH   92 (107)
T ss_dssp             EEEEEESSCCGGGCSEEEEEECS
T ss_pred             EEEEEeccceeCcCceEEEEECc
Confidence            34599999999999999996553

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.22  E-value=0.0026  Score=37.63  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=19.8

Q ss_pred             cceEEEeccCCCCCEEEEEEEEc
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ...|.|.+++++|++.|.|.+..
T Consensus        70 ~~~L~I~~~~~~DsA~YyCa~~~   92 (107)
T d1mexl1          70 DFTLTINNVQSEDLAEYFCQQYN   92 (107)
T ss_dssp             EEEEEESSCCGGGCSEEEEEECS
T ss_pred             eeeeeechhheecceeEEEeECC
Confidence            35599999999999999997653

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.0018  Score=39.08  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=21.7

Q ss_pred             EeecceEEEeccCCCCCEEEEEEEEc
Q psy12131          7 LYNRESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus         7 ~~~~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ..+...|.|.+++.+|+|.|.|.+..
T Consensus        71 ~~~~~~L~I~~l~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          71 NESRVNLTIQGLRAVDTGLYLCKVEL   96 (117)
T ss_dssp             ETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEEhhcCccccCEeEEEEEec
Confidence            34456799999999999999998763

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.19  E-value=0.0022  Score=37.61  Aligned_cols=29  Identities=14%  Similarity=0.473  Sum_probs=23.9

Q ss_pred             cceEEEeecce----EEEeccCCCCCEEEEEEE
Q psy12131          2 KEIELLYNRES----LDLDRVTLKLAGLYQCIA   30 (245)
Q Consensus         2 ~~~~~~~~~~~----L~i~~~~~~d~G~Y~C~~   30 (245)
                      +|++++.+.+.    |+|.+++.+|++.|.|.-
T Consensus        68 gR~tiS~D~s~~t~~L~i~sL~~eDTAvYYCAr  100 (109)
T d2ck0h1          68 DRFTISRDDSQSMLYLQMNNLKTEDTGIYYCVR  100 (109)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cCceeccccccceeEecccCCCHhHCEEEEEEE
Confidence            58888875433    999999999999999964

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.18  E-value=0.004  Score=37.19  Aligned_cols=24  Identities=13%  Similarity=0.159  Sum_probs=21.0

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCC
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNI   34 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~   34 (245)
                      ..|+|.+++.+|+|.|.|.+....
T Consensus        72 ~~L~i~~~~~~Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          72 STLYIAASQPGDSATYLCAVRPTS   95 (113)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEESS
T ss_pred             EEeeeecCCCCCCcEEeEeEecCC
Confidence            469999999999999999988544

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.17  E-value=0.0024  Score=37.94  Aligned_cols=26  Identities=15%  Similarity=0.277  Sum_probs=21.7

Q ss_pred             EeecceEEEeccCCCCCEEEEEEEEc
Q psy12131          7 LYNRESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus         7 ~~~~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ..+...|.|.+++.+|+|.|.|.+..
T Consensus        69 ~~~~~~L~I~~~~~~Dsa~YyCa~~~   94 (110)
T d1oaql_          69 IGNKAALTITGAQTEDEAIYFCALWY   94 (110)
T ss_dssp             ETTEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             cccceeeecCCCCccccEeEEEEccc
Confidence            34456699999999999999998764

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.15  E-value=0.0019  Score=38.42  Aligned_cols=24  Identities=29%  Similarity=0.497  Sum_probs=20.6

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcC
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNN   33 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~   33 (245)
                      ...|.|.+++.+|+|.|.|.+...
T Consensus        68 ~~~L~I~~~~~~Dsa~YyCa~~~~   91 (110)
T d2esvd1          68 SSTLILPHATLRDTAVYYCIVVRS   91 (110)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEES
T ss_pred             eeeehhcccccCCceEEEEEEeCC
Confidence            455999999999999999987643

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.15  E-value=0.0027  Score=37.93  Aligned_cols=25  Identities=20%  Similarity=0.321  Sum_probs=21.2

Q ss_pred             ecceEEEeccCCCCCEEEEEEEEcC
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIASNN   33 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~~~   33 (245)
                      +...|.|.+++++|+|.|.|.+.+.
T Consensus        71 ~~~~L~I~~l~~~Dsa~YyCa~~~~   95 (112)
T d1lgva1          71 NSASLTISGLQAEDEADYYCSSYDG   95 (112)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CEeeEEeCcCccccCEEEEEeeecC
Confidence            4456999999999999999987654

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.13  E-value=0.0017  Score=38.99  Aligned_cols=24  Identities=13%  Similarity=0.185  Sum_probs=20.7

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCC
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNI   34 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~   34 (245)
                      ..|.|.+++.+|+|.|.|.+....
T Consensus        74 ~~L~I~~~~~~Dsg~YyCa~~~~~   97 (114)
T d2ak4d1          74 FNFTITASQVVDSAVYFCALSGFY   97 (114)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECSB
T ss_pred             EEEeecccccccCCCceEeCCCCC
Confidence            459999999999999999877543

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.13  E-value=0.0016  Score=39.11  Aligned_cols=23  Identities=22%  Similarity=0.252  Sum_probs=20.0

Q ss_pred             cceEEEeccCCCCCEEEEEEEEc
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ...|+|.+++.+|+|.|.|.+..
T Consensus        72 ~~~L~I~~~~~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          72 SFHLRKASVHWSDSAVYFCAVSG   94 (115)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEecccccccccceecccccC
Confidence            35699999999999999997764

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.12  E-value=0.0022  Score=38.27  Aligned_cols=24  Identities=13%  Similarity=0.177  Sum_probs=20.8

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcC
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNN   33 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~   33 (245)
                      ...|.|.+++.+|+|.|.|.+...
T Consensus        71 ~~~L~I~~~~~~Dsa~YyCA~~~~   94 (111)
T d1rzfl1          71 SATLGITGLQTGDEADYYCGTWDS   94 (111)
T ss_dssp             EEEEEESSCCGGGCSEEEEEEEET
T ss_pred             EeeeEEeeeccccCcceEEeecCC
Confidence            356999999999999999987754

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.11  E-value=0.0027  Score=37.81  Aligned_cols=28  Identities=11%  Similarity=0.284  Sum_probs=23.3

Q ss_pred             cceEEEeecce----EEEeccCCCCCEEEEEE
Q psy12131          2 KEIELLYNRES----LDLDRVTLKLAGLYQCI   29 (245)
Q Consensus         2 ~~~~~~~~~~~----L~i~~~~~~d~G~Y~C~   29 (245)
                      +|+.+..+.+.    |+|.+++.+|++.|.|-
T Consensus        66 gRftisrD~s~~tvyL~~~~L~~eDtAvYYCA   97 (118)
T d1nlbh1          66 GRFAFSLETSASTAYLQINSLKNEDTATYFCA   97 (118)
T ss_dssp             SSEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             eeeEEEecCCceeEEeeeeecccCcceEEEEe
Confidence            57888875433    99999999999999994

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.10  E-value=0.0025  Score=37.68  Aligned_cols=29  Identities=17%  Similarity=0.363  Sum_probs=24.3

Q ss_pred             cceEEEeecce----EEEeccCCCCCEEEEEEE
Q psy12131          2 KEIELLYNRES----LDLDRVTLKLAGLYQCIA   30 (245)
Q Consensus         2 ~~~~~~~~~~~----L~i~~~~~~d~G~Y~C~~   30 (245)
                      +|++++.+.+.    |+|.+++.+|++.|.|..
T Consensus        66 gRftiSrD~s~nt~~L~~~~L~~eDtAvYYCA~   98 (114)
T d1indh1          66 GRFTISRDNAQNNLYLQLNSLRSEDTALYFCAS   98 (114)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEC
T ss_pred             eeEEEeccCccceeeeeeeeeccCcccEEEECC
Confidence            58888876543    999999999999999954

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.10  E-value=0.0031  Score=38.27  Aligned_cols=22  Identities=23%  Similarity=0.419  Sum_probs=19.7

Q ss_pred             ceEEEeccCCCCCEEEEEEEEc
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      .+|+|.+++.+|+|.|.|.+..
T Consensus        82 ~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          82 YVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             eEEEEcccccCCCEEEEeeEeC
Confidence            3599999999999999998764

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.09  E-value=0.002  Score=38.53  Aligned_cols=25  Identities=24%  Similarity=0.421  Sum_probs=21.1

Q ss_pred             cceEEEeccCCCCCEEEEEEEEcCC
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASNNI   34 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~~~   34 (245)
                      ...|.|.+++++|+|.|.|.+....
T Consensus        70 ~~~L~I~~~~~~Dsa~YyCa~~~~~   94 (113)
T d1h5ba_          70 YSTLHIRDAQLEDSGTYFCAAEASS   94 (113)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             eeEEEECCCCHhHCEEEEEEecCCC
Confidence            3469999999999999999887543

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.09  E-value=0.0026  Score=37.83  Aligned_cols=30  Identities=23%  Similarity=0.402  Sum_probs=24.6

Q ss_pred             cceEEEeecc----eEEEeccCCCCCEEEEEEEE
Q psy12131          2 KEIELLYNRE----SLDLDRVTLKLAGLYQCIAS   31 (245)
Q Consensus         2 ~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~~   31 (245)
                      +|++++.+.+    .|+|.+++.+|++.|.|...
T Consensus        66 gRfTiS~D~s~~t~yLq~~~L~~eDTAvYYCAr~   99 (117)
T d1jnhb1          66 GKATLTADRSSSIVYLQLNSLTSEDSAVYSCSRG   99 (117)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEEeccCccceeeecccccCCCcceEEEEeec
Confidence            5888887654    39999999999999999543

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=96.08  E-value=0.0025  Score=38.18  Aligned_cols=30  Identities=17%  Similarity=0.232  Sum_probs=24.6

Q ss_pred             cceEEEeecce----EEEeccCCCCCEEEEEEEE
Q psy12131          2 KEIELLYNRES----LDLDRVTLKLAGLYQCIAS   31 (245)
Q Consensus         2 ~~~~~~~~~~~----L~i~~~~~~d~G~Y~C~~~   31 (245)
                      +|++++.+.+.    |+|.+++.+|++.|.|...
T Consensus        67 gRfTiSrD~s~n~~~L~~~sL~~eDtAvYYCAr~  100 (120)
T d1ai1h1          67 SRSTISRDTSLNKFFIQLISVTNEDTAMYYCSRE  100 (120)
T ss_dssp             TTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ccceeccccccceeecceeeeeccceeEEEEEec
Confidence            58888876543    9999999999999999644

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.07  E-value=0.0049  Score=36.90  Aligned_cols=25  Identities=16%  Similarity=0.361  Sum_probs=21.2

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCC
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIG   35 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~   35 (245)
                      ..|.|.+++.+|+|.|.|.+....+
T Consensus        73 ~~L~I~~~~~~Dsa~YyCa~~~~~~   97 (115)
T d1fo0a_          73 IGLIITATQIEDSAVYFCAMRGDYG   97 (115)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECCCT
T ss_pred             EEEEECCCCccccccccceeecCCC
Confidence            4599999999999999998875443

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.06  E-value=0.0027  Score=37.94  Aligned_cols=30  Identities=17%  Similarity=0.397  Sum_probs=24.3

Q ss_pred             cceEEEeecce----EEEeccCCCCCEEEEEEEE
Q psy12131          2 KEIELLYNRES----LDLDRVTLKLAGLYQCIAS   31 (245)
Q Consensus         2 ~~~~~~~~~~~----L~i~~~~~~d~G~Y~C~~~   31 (245)
                      +|+.++.+.+.    |+|.+++.+|++.|.|...
T Consensus        66 gRftiSrD~s~nt~yLqm~sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          66 GRVTITADTSTDTGYLELSSLRSEDTAVYYCAAD   99 (119)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eeEEEecccCceEEEeeeeccCcccceEEEEeec
Confidence            57888765433    9999999999999999654

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.06  E-value=0.0026  Score=37.31  Aligned_cols=23  Identities=22%  Similarity=0.271  Sum_probs=20.0

Q ss_pred             cceEEEeccCCCCCEEEEEEEEc
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ...|.|.+++.+|+|.|.|.+..
T Consensus        67 ~~~L~I~~l~~~Dsa~YyCA~~~   89 (103)
T d8faba1          67 TVTLTISGVQAEDEADYYCQAWD   89 (103)
T ss_dssp             EEEEEETTCCGGGCEEEEEEEEE
T ss_pred             ccCceEcCcchhHCceEEeeecC
Confidence            45699999999999999997664

>d1f6fb1 b.1.2.1 (B:5-100) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.06  E-value=0.017  Score=33.11  Aligned_cols=71  Identities=18%  Similarity=0.238  Sum_probs=44.6

Q ss_pred             CCCeeEEEEEeCCCCC-ceEEEEEEEeecCCCCeEEEee-CCCCCCCcceeeeEEEe--cCCCCCceEEEEEEEEecCCC
Q psy12131        154 GPDGYRLVWQVDTYSG-IIQYLLKFREREELTPWRNIVI-PSDGSLAGPIYTQSYNI--TGLQLFTQYEASVLAKNRFGW  229 (245)
Q Consensus       154 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i--~~l~~~~~y~~~v~a~N~~G~  229 (245)
                      ....+..+|.+..... ...|.+.|+... ...|..+.. ....       ..++.+  ..+.....|.++|.|.|.+|.
T Consensus        12 ~~~~~~C~W~~G~~t~L~T~Y~l~~~~~~-~~~~~eCp~y~~~~-------~~~C~f~~~~~~~~~~y~i~V~a~N~LG~   83 (96)
T d1f6fb1          12 DKETFTCWWNPGTDGGLPTNYSLTYSKEG-EKTTYECPDYKTSG-------PNSCFFSKQYTSIWKIYIITVNATNQMGS   83 (96)
T ss_dssp             SSSCEEEEEECCCCTTSCCEEEEEEEETT-EEEEEECSCSSTTC-------TTEEEECTTTCCSSCEEEEEEEEEETTEE
T ss_pred             CCCEEEEEeeCCCcCCcCceEEEEEEecC-CCccccCCcccCCC-------ceeEEECCccCccceEEEEEEEEEcCCCC
Confidence            4457889999844333 367888887643 334443311 1111       134444  456678899999999999997


Q ss_pred             CCC
Q psy12131        230 SRP  232 (245)
Q Consensus       230 ~~~  232 (245)
                      +..
T Consensus        84 ~~S   86 (96)
T d1f6fb1          84 SSS   86 (96)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            644

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0081  Score=35.22  Aligned_cols=69  Identities=22%  Similarity=0.270  Sum_probs=40.1

Q ss_pred             ecCCCeEEEEEEEeecCC----CeEEEEECCEEeccCCcEE--EEecCc---eeEEEEccCCCCCCeEEEEEEEeCCc
Q psy12131         61 TAPDMRAEIICNVYANPP----AKVEWFRDGTAITLGGRID--MHVSSE---KHSLLVRHIKDTDFGNYMCQASNNLG  129 (245)
Q Consensus        61 ~~~g~~~~l~C~~~~~~~----~~~~w~~~~~~~~~~~~~~--~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~g  129 (245)
                      ...+..+.|.|.+.+..+    ..+.|.+++..+.......  ...++.   .+.|.|..-.......|+|.+.....
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   92 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL   92 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCC
Confidence            346788999999988533    3678999888765432111  111111   22344433322234589999997643

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.05  E-value=0.0022  Score=37.86  Aligned_cols=22  Identities=27%  Similarity=0.413  Sum_probs=19.2

Q ss_pred             cceEEEeccCCCCCEEEEEEEE
Q psy12131         10 RESLDLDRVTLKLAGLYQCIAS   31 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~   31 (245)
                      ...|.|.+++++|+|.|.|.+.
T Consensus        69 ~~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1lk3l1          69 DFTLTIDPVEADDTAIYFCQQS   90 (106)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEC
T ss_pred             EEEeEECCcChhhCCCcccccc
Confidence            3569999999999999999654

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.02  E-value=0.0023  Score=37.64  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=19.7

Q ss_pred             ecceEEEeccCCCCCEEEEEEEE
Q psy12131          9 NRESLDLDRVTLKLAGLYQCIAS   31 (245)
Q Consensus         9 ~~~~L~i~~~~~~d~G~Y~C~~~   31 (245)
                      +..+|.|.+++.+|+|.|.|...
T Consensus        67 ~~~~L~I~~~~~~Dsa~YyCa~~   89 (104)
T d1yqvl1          67 TSYSLTISSMETEDAATYYCQQW   89 (104)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CEEEEEecccCcccCCeEEEEec
Confidence            34569999999999999999654

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.01  E-value=0.0073  Score=36.04  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.4

Q ss_pred             cceEEEeccCCCCCEEEEEEEEc
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ...|.|.+++.+|++.|.|.+..
T Consensus        71 ~~~L~I~~v~~~DsA~YyCA~~~   93 (114)
T d2rhea_          71 SASLAISGLESEDEADYYCAAWN   93 (114)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             eeeeEecccCcccCceEEEeecC
Confidence            45699999999999999998764

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=95.98  E-value=0.0032  Score=37.41  Aligned_cols=30  Identities=10%  Similarity=0.293  Sum_probs=24.6

Q ss_pred             cceEEEeecce----EEEeccCCCCCEEEEEEEE
Q psy12131          2 KEIELLYNRES----LDLDRVTLKLAGLYQCIAS   31 (245)
Q Consensus         2 ~~~~~~~~~~~----L~i~~~~~~d~G~Y~C~~~   31 (245)
                      +|+++..+.+.    |+|.+++.+|++.|.|--.
T Consensus        65 gR~tis~D~s~n~~~L~~~~l~~eDTAvYYCAr~   98 (116)
T d1a2yb_          65 SRLSISKDNSKSQVFLKMNSLHTDDTARYYCARE   98 (116)
T ss_dssp             GGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccceEeccCCCceEEcceeeeeeccceEEEEEEe
Confidence            57888875543    9999999999999999644

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=95.98  E-value=0.0048  Score=36.73  Aligned_cols=23  Identities=26%  Similarity=0.476  Sum_probs=19.3

Q ss_pred             cceEEEeccCCCCCEEEEEEEEc
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ...|.|.+++++|+|.|.|...+
T Consensus        75 ~~~L~I~~~~~eDsAvYYC~~~~   97 (112)
T d1ncwl1          75 DFTLKISRVEAEDLGVYYCWQGT   97 (112)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECS
T ss_pred             EEEEEECccccCcCEeEEEEcCC
Confidence            34699999999999999995543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.97  E-value=0.005  Score=35.83  Aligned_cols=32  Identities=16%  Similarity=0.263  Sum_probs=21.0

Q ss_pred             cceEEEeecc----eEEEeccCCCCCEEEEEEEEcC
Q psy12131          2 KEIELLYNRE----SLDLDRVTLKLAGLYQCIASNN   33 (245)
Q Consensus         2 ~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~~~~   33 (245)
                      +|+++..+.+    .|+|.+++.+|++.|.|.....
T Consensus        53 ~R~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAr~~~   88 (103)
T d1oari_          53 SKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARMWY   88 (103)
T ss_dssp             TTEEEEC----CEEEEEECCC---CCSEEEEEEEEC
T ss_pred             eceEEeccccccEEEeeeeeccccccEEEEeEEECC
Confidence            5777776543    4999999999999999965443

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.97  E-value=0.0032  Score=37.37  Aligned_cols=30  Identities=10%  Similarity=0.307  Sum_probs=24.6

Q ss_pred             cceEEEeecc----eEEEeccCCCCCEEEEEEEE
Q psy12131          2 KEIELLYNRE----SLDLDRVTLKLAGLYQCIAS   31 (245)
Q Consensus         2 ~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~~   31 (245)
                      +|+.++.+.+    .|+|.+++.+|++.|.|-..
T Consensus        65 gRftiS~D~s~n~~~L~~~sL~~eDtAvYYCAr~   98 (117)
T d1c5db1          65 SRLSINRDTSKSQVFLKMNSLQTEDTAIYFCTRE   98 (117)
T ss_dssp             SSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             cceEEecccccceeeccccccccCcceEEEEecc
Confidence            5888887643    39999999999999999543

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.96  E-value=0.0074  Score=36.39  Aligned_cols=30  Identities=17%  Similarity=0.238  Sum_probs=22.8

Q ss_pred             ceEEEeec----ceEEEeccCCCCCEEEEEEEEc
Q psy12131          3 EIELLYNR----ESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus         3 ~~~~~~~~----~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      |..+..+.    ..|+|.+++.+|+|.|.|....
T Consensus        67 r~~~s~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          67 KMEASKNPSASTSILTIYSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             EEEEEECCTTTEEEEEECSCCGGGCSEEEEEECC
T ss_pred             ccccccccccccccccccccccccceeEEEEEcC
Confidence            45555432    3499999999999999997654

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.91  E-value=0.0036  Score=37.24  Aligned_cols=28  Identities=18%  Similarity=0.445  Sum_probs=23.5

Q ss_pred             cceEEEeecc----eEEEeccCCCCCEEEEEE
Q psy12131          2 KEIELLYNRE----SLDLDRVTLKLAGLYQCI   29 (245)
Q Consensus         2 ~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~   29 (245)
                      +|+++..+.+    .|+|.+++.+|++.|.|.
T Consensus        66 gR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCA   97 (118)
T d2jelh1          66 GKATMTVDKSSSTAYMELARLTSEDSAIYYCA   97 (118)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             ccEEEecccCcceEeecccccccCcceeeeEE
Confidence            5888887644    399999999999999994

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.91  E-value=0.0036  Score=37.61  Aligned_cols=31  Identities=10%  Similarity=0.255  Sum_probs=24.9

Q ss_pred             cceEEEeecc----eEEEeccCCCCCEEEEEEEEc
Q psy12131          2 KEIELLYNRE----SLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus         2 ~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      +|+.++.+.+    .|+|.+++.+|++.|.|....
T Consensus        66 gRftiSrD~s~~t~yL~m~sL~~eDTAvYYCAr~~  100 (122)
T d1bz7b1          66 GRFTISRDNPKNTLFLQMTSLRSEDTAIYYCTRGG  100 (122)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             eeEEEeccCCccEeEeeeeeecccCceEEEeecCC
Confidence            6788886643    399999999999999996543

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.90  E-value=0.0035  Score=37.26  Aligned_cols=29  Identities=17%  Similarity=0.411  Sum_probs=23.3

Q ss_pred             cceEEEeecc----eEEEeccCCCCCEEEEEEE
Q psy12131          2 KEIELLYNRE----SLDLDRVTLKLAGLYQCIA   30 (245)
Q Consensus         2 ~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~   30 (245)
                      +|+++..+.+    .|+|.+++.+|++.|.|-.
T Consensus        66 gRftis~D~s~~t~~L~i~~l~~eDtAvYYCAr   98 (115)
T d1f3dh1          66 GKATLTVDKSSSTAFMHLNSLTFEDSAVYYCAN   98 (115)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEEEeeccCceeeEeeeeecCcCCcEEEEEec
Confidence            5777876432    3999999999999999943

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.90  E-value=0.0054  Score=36.45  Aligned_cols=22  Identities=27%  Similarity=0.585  Sum_probs=19.7

Q ss_pred             ceEEEeccCCCCCEEEEEEEEc
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ..|+|.+++.+|+|.|.|.+..
T Consensus        73 ~~L~i~~~~~~Dsa~YyCa~~~   94 (111)
T d2esve1          73 STLKVQPAELEDSGVYFCASSQ   94 (111)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES
T ss_pred             EEEEECCcccCCCceEEEeeeC
Confidence            4699999999999999997664

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.89  E-value=0.0066  Score=36.34  Aligned_cols=31  Identities=10%  Similarity=0.259  Sum_probs=25.2

Q ss_pred             cceEEEeecc----eEEEeccCCCCCEEEEEEEEc
Q psy12131          2 KEIELLYNRE----SLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus         2 ~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      +|+++..+.+    .|+|.+++.+|++.|.|....
T Consensus        67 gR~tiS~D~s~ntvyL~~~~L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          67 GRVTFTRDTSATTAYMGLSSLRPEDTAVYYCARDP  101 (122)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEET
T ss_pred             EeeEEeccCCcceeeecccccCCCcceEEEEeecC
Confidence            5888887644    399999999999999996553

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.88  E-value=0.0092  Score=34.84  Aligned_cols=66  Identities=12%  Similarity=0.230  Sum_probs=38.1

Q ss_pred             CCCeEEEEEEEeec-CC---CeEEEEECCEEeccCCcEE-EEecCc----eeEEEEccCCCCCCeEEEEEEEeCC
Q psy12131         63 PDMRAEIICNVYAN-PP---AKVEWFRDGTAITLGGRID-MHVSSE----KHSLLVRHIKDTDFGNYMCQASNNL  128 (245)
Q Consensus        63 ~g~~~~l~C~~~~~-~~---~~~~w~~~~~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~  128 (245)
                      .+..+.|.|.+.+. |.   ..+.|.+++..+....... ....++    .+.|.|..-.......|+|.+....
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            56778999999885 33   3788999887654432111 111111    2344443322223446999999864

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=95.87  E-value=0.0028  Score=37.08  Aligned_cols=30  Identities=10%  Similarity=0.313  Sum_probs=24.4

Q ss_pred             cceEEEeecc----eEEEeccCCCCCEEEEEEEE
Q psy12131          2 KEIELLYNRE----SLDLDRVTLKLAGLYQCIAS   31 (245)
Q Consensus         2 ~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~~   31 (245)
                      +|+++..+.+    .|+|.+++.+|++.|.|...
T Consensus        58 gR~tiSrd~s~n~~~L~i~~l~~eDtAvYyCA~~   91 (107)
T d1sjva_          58 GRFTISRDNAKKTVYLEMNSLEPEDTAVYYCYTH   91 (107)
T ss_dssp             TCEEEEECTTTCCEEEEECSCCGGGCSEEEEEEC
T ss_pred             cceEEecCCceeEEEEeecCCCcccceeeeEecc
Confidence            5788886543    39999999999999999644

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.87  E-value=0.0054  Score=36.47  Aligned_cols=31  Identities=10%  Similarity=0.323  Sum_probs=25.4

Q ss_pred             cceEEEeecc----eEEEeccCCCCCEEEEEEEEc
Q psy12131          2 KEIELLYNRE----SLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus         2 ~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      +|+++..+.+    .|+|.+++.+|++.|.|....
T Consensus        66 gR~tiS~D~s~~t~~L~i~~L~~eDtAvYYCA~~~  100 (117)
T d1iqdb1          66 GSVTMTADTSTNIAYMELSSLRSDDTAVYYCAVPD  100 (117)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             eeeeeecccccceEEEeecccCcCcceEEEEeEcC
Confidence            5788887554    399999999999999997653

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.87  E-value=0.0038  Score=37.61  Aligned_cols=31  Identities=19%  Similarity=0.396  Sum_probs=25.2

Q ss_pred             cceEEEeecce----EEEeccCCCCCEEEEEEEEc
Q psy12131          2 KEIELLYNRES----LDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus         2 ~~~~~~~~~~~----L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      +|+.+..+.+.    |+|.+++.+|++.|.|....
T Consensus        65 gR~tis~D~s~~t~yLq~~sL~~eDtAvYYCAr~~   99 (124)
T d1zvya1          65 GRFTISQDKAKNMAYLRMDSVKSEDTAIYTCGATR   99 (124)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             cccEEecccccceeeceeccccCCcceEEEEeecc
Confidence            57888876433    99999999999999997653

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.86  E-value=0.0067  Score=36.09  Aligned_cols=31  Identities=16%  Similarity=0.314  Sum_probs=25.1

Q ss_pred             cceEEEeecc----eEEEeccCCCCCEEEEEEEEc
Q psy12131          2 KEIELLYNRE----SLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus         2 ~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      +|+.++.+.+    .|+|.+++.+|++.|.|....
T Consensus        66 gRftiSrD~s~nt~~L~~~sL~~eDtAvYYCAr~~  100 (118)
T d2fbjh1          66 DKFIISRDNAKNSLYLQMSKVRSEDTALYYCARLH  100 (118)
T ss_dssp             TTEEEEECSSSCEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             eeEEEeecCccceeeccccccCCCcceEEEeeEec
Confidence            5788886543    399999999999999997554

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.86  E-value=0.0028  Score=37.59  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=20.1

Q ss_pred             cceEEEeccCCCCCEEEEEEEEc
Q psy12131         10 RESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        10 ~~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ...|.|.+++++|+|.|.|.+..
T Consensus        70 ~~~L~I~~~~~~DSa~YyCA~~~   92 (109)
T d1mqkl_          70 QFSLKINSLLPEDFGSYYCQHHY   92 (109)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECS
T ss_pred             EEEEEEccccccCCeeEEEeeeC
Confidence            45599999999999999998764

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.86  E-value=0.0039  Score=37.19  Aligned_cols=29  Identities=17%  Similarity=0.319  Sum_probs=23.8

Q ss_pred             cceEEEeecc----eEEEeccCCCCCEEEEEEE
Q psy12131          2 KEIELLYNRE----SLDLDRVTLKLAGLYQCIA   30 (245)
Q Consensus         2 ~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~   30 (245)
                      +|+.+..+.+    .|+|.+++.+|++.|.|..
T Consensus        66 gRftiSrD~s~nt~~L~~~sL~~eDTAvYYCAr   98 (119)
T d1eapb1          66 VKATLTADQSSSTAYMQLNSLTSEDSAVYFCKR   98 (119)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cceEEEcccCcceEEeeeecccCCcceEEEEEE
Confidence            5788886544    3999999999999999953

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=95.85  E-value=0.0066  Score=36.03  Aligned_cols=31  Identities=29%  Similarity=0.424  Sum_probs=24.9

Q ss_pred             cceEEEeecc----eEEEeccCCCCCEEEEEEEEc
Q psy12131          2 KEIELLYNRE----SLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus         2 ~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      +|+.+..+.+    .|+|.+++.+|++.|.|....
T Consensus        65 gR~tis~D~s~~~~~L~i~~L~~eDtAvYyCAr~~   99 (116)
T d7fabh1          65 GRVTMLVNTSKNQFSLRLSSVTAADTAVYYCARNL   99 (116)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ecceeecccchhhhhccccccccccceEEEeeeec
Confidence            5788876543    399999999999999996543

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.84  E-value=0.0073  Score=36.30  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=20.7

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCC
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNI   34 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~   34 (245)
                      ..|+|.+++++|+|.|.|.+....
T Consensus        77 ~~L~i~~~~~~Dsa~YyCa~~~~~  100 (118)
T d2ij0c1          77 STLTVTSAHPEDSGFYVCSALAGS  100 (118)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSS
T ss_pred             ccccccccccccCceEEEEEecCC
Confidence            459999999999999999887543

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.003  Score=38.07  Aligned_cols=22  Identities=14%  Similarity=0.308  Sum_probs=19.5

Q ss_pred             ceEEEeccCCCCCEEEEEEEEc
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      .+|+|.+++.+|+|.|.|.+..
T Consensus        77 ~~L~I~~l~~~DsavYyCa~~~   98 (118)
T d1yjdc1          77 VTFYLQNLYVNQTDIYFCKIEV   98 (118)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEE
T ss_pred             EEEEECCCCcccCeEEEEEEec
Confidence            3699999999999999998764

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.83  E-value=0.0038  Score=37.72  Aligned_cols=31  Identities=13%  Similarity=0.343  Sum_probs=25.4

Q ss_pred             cceEEEeecce----EEEeccCCCCCEEEEEEEEc
Q psy12131          2 KEIELLYNRES----LDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus         2 ~~~~~~~~~~~----L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      +|+.++.+.+.    |+|.+++.+|++.|.|....
T Consensus        66 gR~tiS~D~s~~t~yL~~~sL~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          66 GRVTITADKSTSTVYLELRNLRSDDTAVYFCAGVY  100 (128)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEEeecCCCceEEeeeeeccccCceEEEEeEEe
Confidence            68888876433    99999999999999997654

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.83  E-value=0.0032  Score=37.38  Aligned_cols=22  Identities=9%  Similarity=0.203  Sum_probs=19.5

Q ss_pred             ceEEEeccCCCCCEEEEEEEEc
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      ..|+|.+++++|+|.|.|.+..
T Consensus        73 ~~L~I~~l~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          73 YTFTISSLQPEDIATYYCQQYQ   94 (109)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             eEEEEeeceeCcCceEEEeecC
Confidence            4599999999999999997664

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=95.82  E-value=0.004  Score=37.49  Aligned_cols=30  Identities=17%  Similarity=0.294  Sum_probs=24.2

Q ss_pred             cceEEEeecc----eEEEeccCCCCCEEEEEEEE
Q psy12131          2 KEIELLYNRE----SLDLDRVTLKLAGLYQCIAS   31 (245)
Q Consensus         2 ~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~~   31 (245)
                      +|+++..+.+    .|+|.+++.+|++.|.|...
T Consensus        67 ~Rftis~D~s~~~~~L~i~sl~~eDsAvYyCAr~  100 (123)
T d1r0ah1          67 SRLTVSKDTSNNQAFLNMMTVETADTAIYYCAQS  100 (123)
T ss_dssp             GGEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEccccccceeEEcceeecccccceEEeeccc
Confidence            5778876543    39999999999999999644

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.82  E-value=0.001  Score=38.57  Aligned_cols=25  Identities=20%  Similarity=0.263  Sum_probs=21.4

Q ss_pred             ceEEEeccCCCCCEEEEEEEEcCCC
Q psy12131         11 ESLDLDRVTLKLAGLYQCIASNNIG   35 (245)
Q Consensus        11 ~~L~i~~~~~~d~G~Y~C~~~~~~~   35 (245)
                      ..|+|.+++++|+|.|.|.+....|
T Consensus        64 ~~L~I~~~~~~Dsa~YyCA~~~~~g   88 (96)
T d1ymmd1          64 SSLLITASRAADTASYFCATDTTSG   88 (96)
T ss_dssp             CCBCCSSCCSTTCSCCEEEEEETTS
T ss_pred             cccCcCCCCcccCEEEeEeEecCCC
Confidence            4599999999999999998876544

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.82  E-value=0.0041  Score=37.34  Aligned_cols=30  Identities=17%  Similarity=0.269  Sum_probs=24.1

Q ss_pred             cceEEEeecc----eEEEeccCCCCCEEEEEEEE
Q psy12131          2 KEIELLYNRE----SLDLDRVTLKLAGLYQCIAS   31 (245)
Q Consensus         2 ~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~~   31 (245)
                      +|+++..+.+    .|+|.+++.+|++.|.|...
T Consensus        66 gR~tis~D~s~~t~~L~i~~L~~eDtAvYYCAr~   99 (121)
T d1j05b_          66 GKATITADTSSNTAYLQLTSLTSEDTAVYYCAPF   99 (121)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceEEEeecCCceeeecccccCcCcceEEEeEee
Confidence            5788876443    39999999999999999654

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=95.81  E-value=0.0042  Score=37.28  Aligned_cols=31  Identities=10%  Similarity=0.318  Sum_probs=24.8

Q ss_pred             cceEEEeecc----eEEEeccCCCCCEEEEEEEEc
Q psy12131          2 KEIELLYNRE----SLDLDRVTLKLAGLYQCIASN   32 (245)
Q Consensus         2 ~~~~~~~~~~----~L~i~~~~~~d~G~Y~C~~~~   32 (245)
                      +|+.+..+.+    .|+|.+++.+|++.|.|....
T Consensus        66 gR~tis~D~s~nt~~L~i~~L~~eDtAvYYCAr~~  100 (123)
T d1mqkh_          66 GRFTISRDNAKNTLYLQMSSLKSEDTAMYYCVRHE  100 (123)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEEEecCcccccccceeeeccCcccceeEEecC
Confidence            5788886543    399999999999999996553

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.81  E-value=0.0017  Score=38.80  Aligned_cols=26  Identities=19%  Similarity=0.429  Sum_probs=19.5

Q ss_pred             CCCeEEEEEEEeecCC--CeEEEEECCE
Q psy12131         63 PDMRAEIICNVYANPP--AKVEWFRDGT   88 (245)
Q Consensus        63 ~g~~~~l~C~~~~~~~--~~~~w~~~~~   88 (245)
                      .+..+.|.|.+.+..+  ..|.|.+++.
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~   53 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEP   53 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCT
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCC
Confidence            3567889999998644  3899987663